Query 005753
Match_columns 679
No_of_seqs 431 out of 2211
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 13:15:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 1.9E-94 4.1E-99 828.7 49.5 367 56-441 41-423 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 6.8E-93 1.5E-97 801.0 27.1 356 64-441 4-380 (1221)
3 KOG0240 Kinesin (SMY1 subfamil 100.0 7.3E-90 1.6E-94 744.2 42.7 356 62-442 5-365 (607)
4 KOG4280 Kinesin-like protein [ 100.0 1E-91 2.2E-96 777.6 25.6 354 63-440 4-367 (574)
5 PLN03188 kinesin-12 family pro 100.0 3.3E-84 7.1E-89 750.1 40.5 347 63-437 97-468 (1320)
6 KOG0242 Kinesin-like protein [ 100.0 2.4E-82 5.1E-87 727.2 34.7 357 62-445 4-368 (675)
7 cd01373 KISc_KLP2_like Kinesin 100.0 6.1E-82 1.3E-86 679.4 33.9 321 64-408 1-337 (337)
8 KOG0241 Kinesin-like protein [ 100.0 1.9E-82 4E-87 703.6 30.1 385 63-471 3-413 (1714)
9 cd01370 KISc_KIP3_like Kinesin 100.0 8.3E-81 1.8E-85 670.9 33.9 320 65-408 1-338 (338)
10 cd01368 KISc_KIF23_like Kinesi 100.0 9.6E-79 2.1E-83 656.4 33.9 320 65-406 2-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3E-78 6.5E-83 655.5 34.9 329 64-415 1-356 (356)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1E-77 2.2E-82 650.6 35.2 334 64-416 2-351 (352)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 6.6E-77 1.4E-81 639.6 35.2 324 64-408 1-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 1.3E-76 2.8E-81 634.5 32.3 311 64-406 1-322 (322)
15 cd01376 KISc_KID_like Kinesin 100.0 3.1E-76 6.7E-81 630.9 33.3 311 65-406 1-319 (319)
16 cd01372 KISc_KIF4 Kinesin moto 100.0 5.2E-76 1.1E-80 634.7 34.9 328 65-409 2-341 (341)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 4.2E-76 9.1E-81 631.5 33.8 319 64-408 2-325 (325)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 4E-75 8.8E-80 622.9 34.0 316 65-408 1-321 (321)
19 cd01375 KISc_KIF9_like Kinesin 100.0 5E-75 1.1E-79 625.2 33.2 314 65-406 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 1.7E-73 3.8E-78 612.2 34.8 319 63-410 1-328 (329)
21 KOG0239 Kinesin (KAR3 subfamil 100.0 1E-73 2.2E-78 653.8 22.5 326 61-414 311-646 (670)
22 smart00129 KISc Kinesin motor, 100.0 1.8E-71 3.9E-76 597.8 34.3 326 65-415 1-335 (335)
23 KOG0247 Kinesin-like protein [ 100.0 2.4E-70 5.3E-75 604.9 39.6 324 63-414 30-442 (809)
24 PF00225 Kinesin: Kinesin moto 100.0 2E-71 4.3E-76 597.3 25.0 318 71-408 1-335 (335)
25 cd00106 KISc Kinesin motor dom 100.0 9.3E-70 2E-74 582.7 34.1 315 65-406 1-328 (328)
26 KOG0246 Kinesin-like protein [ 100.0 3.2E-70 7E-75 589.3 26.7 318 64-409 208-542 (676)
27 KOG0244 Kinesin-like protein [ 100.0 1.3E-69 2.7E-74 615.2 22.2 341 72-440 1-348 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.7E-61 3.7E-66 549.9 35.6 318 63-416 21-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1E-50 2.3E-55 402.1 18.1 179 126-387 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.0 4.9E-08 1.1E-12 112.6 -12.4 255 61-352 302-566 (568)
31 KOG1029 Endocytic adaptor prot 97.3 0.036 7.8E-07 64.3 21.6 60 541-600 435-494 (1118)
32 PF09726 Macoilin: Transmembra 97.1 0.062 1.3E-06 63.8 22.5 18 422-439 418-435 (697)
33 PRK11637 AmiB activator; Provi 96.9 0.8 1.7E-05 51.6 28.5 34 566-599 221-254 (428)
34 PHA02562 46 endonuclease subun 96.9 0.25 5.5E-06 57.1 24.6 17 144-160 28-44 (562)
35 COG1579 Zn-ribbon protein, pos 96.5 0.78 1.7E-05 47.6 22.4 55 529-583 89-143 (239)
36 KOG0933 Structural maintenance 96.4 0.64 1.4E-05 56.0 23.7 85 517-601 782-866 (1174)
37 TIGR02169 SMC_prok_A chromosom 96.4 0.57 1.2E-05 58.8 25.0 14 147-160 27-40 (1164)
38 PRK11637 AmiB activator; Provi 96.4 0.97 2.1E-05 50.9 24.3 50 555-604 203-252 (428)
39 PF09726 Macoilin: Transmembra 96.4 0.12 2.5E-06 61.5 17.5 116 542-659 544-683 (697)
40 TIGR02169 SMC_prok_A chromosom 96.4 0.75 1.6E-05 57.7 25.8 54 551-604 393-446 (1164)
41 KOG0971 Microtubule-associated 96.3 0.46 1E-05 56.4 21.5 49 515-563 455-503 (1243)
42 KOG0250 DNA repair protein RAD 96.3 1.2 2.5E-05 54.6 25.2 77 526-602 355-432 (1074)
43 PF07888 CALCOCO1: Calcium bin 96.3 1.5 3.2E-05 50.5 24.9 19 481-499 217-235 (546)
44 COG1196 Smc Chromosome segrega 96.3 1 2.3E-05 57.0 26.3 44 566-609 865-908 (1163)
45 KOG2129 Uncharacterized conser 96.3 1.3 2.7E-05 48.8 22.9 146 469-622 193-338 (552)
46 PRK02224 chromosome segregatio 96.3 0.97 2.1E-05 55.4 25.5 15 146-160 26-40 (880)
47 PF00038 Filament: Intermediat 96.3 1 2.3E-05 48.2 23.0 38 523-560 217-254 (312)
48 KOG0996 Structural maintenance 96.2 0.64 1.4E-05 56.9 22.6 80 530-609 385-464 (1293)
49 TIGR02168 SMC_prok_B chromosom 96.2 0.75 1.6E-05 57.6 24.8 16 145-160 25-40 (1179)
50 PF08317 Spc7: Spc7 kinetochor 96.2 1.2 2.5E-05 48.5 22.8 56 550-605 209-264 (325)
51 KOG0971 Microtubule-associated 96.1 1.4 3E-05 52.6 23.6 15 108-122 55-69 (1243)
52 PF09728 Taxilin: Myosin-like 96.1 2.2 4.7E-05 46.2 24.0 65 538-602 204-268 (309)
53 KOG0996 Structural maintenance 96.1 1.1 2.4E-05 55.0 23.4 133 525-659 517-677 (1293)
54 PF10267 Tmemb_cc2: Predicted 96.0 0.14 3E-06 56.8 14.9 115 532-650 247-368 (395)
55 KOG0161 Myosin class II heavy 96.0 1.2 2.5E-05 58.2 24.9 25 135-159 159-184 (1930)
56 COG4942 Membrane-bound metallo 96.0 2.2 4.7E-05 47.7 23.7 77 526-602 168-248 (420)
57 KOG0933 Structural maintenance 95.9 1.3 2.7E-05 53.7 22.7 33 231-263 548-580 (1174)
58 KOG0999 Microtubule-associated 95.9 2.1 4.5E-05 48.7 23.1 81 480-560 103-187 (772)
59 KOG1029 Endocytic adaptor prot 95.9 1.3 2.9E-05 52.0 22.2 15 130-144 73-87 (1118)
60 COG1196 Smc Chromosome segrega 95.9 1.7 3.6E-05 55.3 25.3 6 120-125 118-123 (1163)
61 PHA02562 46 endonuclease subun 95.9 2 4.3E-05 49.8 24.3 56 547-602 334-389 (562)
62 TIGR02168 SMC_prok_B chromosom 95.8 1.8 3.9E-05 54.2 25.6 6 67-72 78-83 (1179)
63 KOG0977 Nuclear envelope prote 95.8 0.83 1.8E-05 52.5 19.9 112 477-605 106-217 (546)
64 PF00038 Filament: Intermediat 95.7 3.6 7.8E-05 44.0 24.9 56 547-602 192-247 (312)
65 COG4372 Uncharacterized protei 95.7 4.2 9E-05 44.6 27.0 54 339-404 7-67 (499)
66 KOG0980 Actin-binding protein 95.7 2.5 5.3E-05 50.6 23.5 60 525-584 462-521 (980)
67 KOG0980 Actin-binding protein 95.6 2.3 5E-05 50.9 23.1 46 520-565 471-516 (980)
68 KOG0161 Myosin class II heavy 95.6 1.8 3.8E-05 56.7 24.1 84 522-605 1013-1110(1930)
69 KOG0963 Transcription factor/C 95.6 5.3 0.00012 46.3 25.4 25 481-505 200-224 (629)
70 COG1579 Zn-ribbon protein, pos 95.6 1.1 2.3E-05 46.6 18.2 80 523-602 90-173 (239)
71 PRK02224 chromosome segregatio 95.4 1.3 2.9E-05 54.2 21.8 25 581-605 338-362 (880)
72 PF12128 DUF3584: Protein of u 95.4 2 4.4E-05 54.7 23.8 24 523-546 772-795 (1201)
73 KOG4673 Transcription factor T 95.3 4.7 0.0001 47.1 23.6 17 423-439 347-363 (961)
74 PF12128 DUF3584: Protein of u 95.3 3.6 7.7E-05 52.5 25.5 12 172-183 181-192 (1201)
75 PF07888 CALCOCO1: Calcium bin 95.3 7.2 0.00016 45.1 25.1 33 570-602 282-314 (546)
76 PRK04778 septation ring format 95.3 3.3 7.2E-05 48.5 23.4 80 523-602 318-407 (569)
77 smart00787 Spc7 Spc7 kinetocho 95.2 5.6 0.00012 43.1 23.3 82 526-607 176-261 (312)
78 PF04849 HAP1_N: HAP1 N-termin 95.1 1.3 2.9E-05 47.4 17.6 54 525-578 251-304 (306)
79 PF15070 GOLGA2L5: Putative go 95.1 4.6 9.9E-05 47.7 23.5 43 533-575 185-227 (617)
80 KOG4643 Uncharacterized coiled 95.1 4.5 9.8E-05 49.1 23.2 77 523-599 482-558 (1195)
81 KOG1103 Predicted coiled-coil 95.0 1.3 2.7E-05 47.7 16.8 44 559-602 247-290 (561)
82 PF10174 Cast: RIM-binding pro 95.0 4.4 9.6E-05 48.9 23.5 124 480-604 468-602 (775)
83 KOG1850 Myosin-like coiled-coi 95.0 6.3 0.00014 42.2 23.0 48 534-581 206-253 (391)
84 PRK09039 hypothetical protein; 95.0 2.4 5.3E-05 46.4 19.7 72 527-598 114-185 (343)
85 PF08317 Spc7: Spc7 kinetochor 94.9 5.7 0.00012 43.2 22.5 54 549-602 215-268 (325)
86 PRK04863 mukB cell division pr 94.9 5.2 0.00011 51.9 25.1 17 144-160 28-44 (1486)
87 KOG0250 DNA repair protein RAD 94.9 8.3 0.00018 47.5 25.2 86 523-608 331-431 (1074)
88 KOG0982 Centrosomal protein Nu 94.9 8 0.00017 43.0 24.7 39 553-591 356-394 (502)
89 KOG0977 Nuclear envelope prote 94.9 0.93 2E-05 52.1 16.5 70 523-602 297-366 (546)
90 PF05667 DUF812: Protein of un 94.8 5.8 0.00013 46.7 23.3 30 573-602 500-529 (594)
91 KOG3850 Predicted membrane pro 94.8 0.89 1.9E-05 49.5 15.2 98 532-631 295-403 (455)
92 PF14662 CCDC155: Coiled-coil 94.7 5.3 0.00012 40.0 22.5 51 554-604 141-191 (193)
93 PF00261 Tropomyosin: Tropomyo 94.6 3.1 6.8E-05 43.1 18.7 57 544-600 170-226 (237)
94 PF08614 ATG16: Autophagy prot 94.6 0.42 9E-06 48.0 11.9 89 523-611 103-192 (194)
95 PF10473 CENP-F_leu_zip: Leuci 94.6 1.9 4E-05 41.3 15.4 78 523-603 60-137 (140)
96 KOG0994 Extracellular matrix g 94.5 6.6 0.00014 48.4 22.8 66 537-602 1676-1741(1758)
97 PF09755 DUF2046: Uncharacteri 94.5 8.3 0.00018 41.4 22.2 27 552-578 137-163 (310)
98 PF10481 CENP-F_N: Cenp-F N-te 94.5 5.7 0.00012 41.7 19.6 73 530-602 96-193 (307)
99 KOG0946 ER-Golgi vesicle-tethe 94.4 5.8 0.00013 47.2 21.5 30 572-601 856-885 (970)
100 KOG4643 Uncharacterized coiled 94.4 2.3 4.9E-05 51.5 18.5 38 569-606 306-343 (1195)
101 COG0419 SbcC ATPase involved i 94.2 11 0.00024 46.6 25.4 96 527-622 366-461 (908)
102 PF06160 EzrA: Septation ring 94.2 2.7 5.8E-05 49.2 18.9 128 439-578 207-334 (560)
103 PRK12704 phosphodiesterase; Pr 94.2 12 0.00027 43.3 23.9 8 593-600 174-181 (520)
104 KOG2129 Uncharacterized conser 94.1 5.7 0.00012 43.9 19.5 34 468-501 149-182 (552)
105 PRK09039 hypothetical protein; 94.1 9.2 0.0002 42.0 21.7 56 546-601 147-203 (343)
106 KOG0963 Transcription factor/C 94.0 13 0.00029 43.2 23.2 48 564-611 228-275 (629)
107 PRK04778 septation ring format 94.0 6 0.00013 46.4 21.4 13 590-602 453-465 (569)
108 COG4477 EzrA Negative regulato 94.0 8.6 0.00019 44.0 21.3 70 541-610 345-421 (570)
109 KOG4673 Transcription factor T 94.0 16 0.00036 42.8 24.2 60 524-583 706-765 (961)
110 PRK03918 chromosome segregatio 94.0 8.2 0.00018 47.4 23.5 14 147-160 27-40 (880)
111 TIGR03319 YmdA_YtgF conserved 93.8 16 0.00036 42.3 24.4 9 592-600 167-175 (514)
112 COG0556 UvrB Helicase subunit 93.8 0.099 2.1E-06 59.2 5.8 92 109-205 3-101 (663)
113 PF00308 Bac_DnaA: Bacterial d 93.8 0.046 1E-06 55.9 3.1 49 109-160 3-51 (219)
114 PRK10884 SH3 domain-containing 93.8 0.98 2.1E-05 46.0 12.5 16 525-540 96-111 (206)
115 PF05667 DUF812: Protein of un 93.8 6.4 0.00014 46.3 20.8 11 358-368 239-249 (594)
116 PRK03918 chromosome segregatio 93.7 9.3 0.0002 46.8 23.4 13 384-396 441-453 (880)
117 PRK04863 mukB cell division pr 93.7 12 0.00027 48.5 24.8 13 363-375 211-223 (1486)
118 PF04849 HAP1_N: HAP1 N-termin 93.6 12 0.00027 40.2 24.0 122 481-602 164-286 (306)
119 KOG0978 E3 ubiquitin ligase in 93.6 18 0.00039 43.0 23.8 78 526-603 542-619 (698)
120 KOG0964 Structural maintenance 93.5 13 0.00028 45.4 22.5 75 530-604 419-493 (1200)
121 COG1340 Uncharacterized archae 93.4 13 0.00028 39.8 24.8 50 553-602 189-238 (294)
122 KOG1853 LIS1-interacting prote 93.4 11 0.00025 39.0 21.3 74 528-605 111-184 (333)
123 KOG0995 Centromere-associated 93.3 4.1 9E-05 46.8 17.4 10 177-186 108-117 (581)
124 KOG0612 Rho-associated, coiled 93.3 12 0.00027 46.5 22.3 40 561-600 627-666 (1317)
125 KOG0964 Structural maintenance 93.2 18 0.0004 44.1 23.1 20 642-661 1031-1050(1200)
126 KOG0018 Structural maintenance 93.1 10 0.00022 46.7 21.1 84 523-607 808-892 (1141)
127 KOG0999 Microtubule-associated 93.1 14 0.00031 42.3 21.0 77 526-602 104-187 (772)
128 KOG0612 Rho-associated, coiled 93.0 9.3 0.0002 47.5 20.7 30 549-578 622-651 (1317)
129 PF00261 Tropomyosin: Tropomyo 92.9 13 0.00028 38.5 24.9 41 563-603 175-215 (237)
130 KOG0579 Ste20-like serine/thre 92.9 24 0.00053 41.6 23.9 50 572-621 996-1046(1187)
131 PRK06893 DNA replication initi 92.9 0.092 2E-06 53.9 3.6 46 109-160 11-56 (229)
132 TIGR00606 rad50 rad50. This fa 92.9 22 0.00047 46.0 25.4 48 550-597 977-1024(1311)
133 KOG1899 LAR transmembrane tyro 92.8 10 0.00022 44.1 19.4 56 526-581 206-262 (861)
134 COG2804 PulE Type II secretory 92.7 0.17 3.7E-06 57.3 5.6 29 133-161 248-276 (500)
135 PF09731 Mitofilin: Mitochondr 92.5 26 0.00057 41.0 27.1 21 420-440 249-269 (582)
136 COG4942 Membrane-bound metallo 92.5 21 0.00046 40.0 24.1 13 650-662 302-314 (420)
137 KOG4807 F-actin binding protei 92.4 20 0.00044 39.5 22.3 72 430-501 353-438 (593)
138 KOG0804 Cytoplasmic Zn-finger 92.4 4.2 9.2E-05 45.4 15.5 33 572-604 415-447 (493)
139 COG2805 PilT Tfp pilus assembl 92.4 0.077 1.7E-06 56.5 2.3 30 131-160 113-142 (353)
140 TIGR00606 rad50 rad50. This fa 92.3 21 0.00046 46.1 24.3 10 389-398 634-643 (1311)
141 PF09730 BicD: Microtubule-ass 92.3 7.2 0.00016 46.7 18.5 78 524-601 78-169 (717)
142 PF15397 DUF4618: Domain of un 92.2 17 0.00037 38.2 23.0 40 573-612 188-227 (258)
143 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.9 6.1 0.00013 37.2 14.3 13 482-494 22-34 (132)
144 KOG4674 Uncharacterized conser 91.9 27 0.00058 45.8 23.7 12 483-494 871-882 (1822)
145 COG1340 Uncharacterized archae 91.9 20 0.00044 38.3 22.4 66 526-592 135-200 (294)
146 KOG4360 Uncharacterized coiled 91.8 8.8 0.00019 43.6 17.2 56 522-577 247-302 (596)
147 TIGR01843 type_I_hlyD type I s 91.7 24 0.00053 38.9 22.4 16 588-603 249-264 (423)
148 KOG0243 Kinesin-like protein [ 91.7 4.8 0.0001 49.5 16.3 105 478-583 405-516 (1041)
149 PRK11281 hypothetical protein; 91.7 14 0.00029 46.7 20.8 80 524-603 165-252 (1113)
150 PF05911 DUF869: Plant protein 91.7 25 0.00055 42.6 22.2 84 521-604 672-759 (769)
151 PF00769 ERM: Ezrin/radixin/mo 91.5 9.4 0.0002 39.9 16.5 51 533-583 65-115 (246)
152 KOG1003 Actin filament-coating 91.5 17 0.00036 36.6 20.7 40 523-562 82-121 (205)
153 PF10146 zf-C4H2: Zinc finger- 91.4 4.2 9.1E-05 42.1 13.6 68 533-600 36-103 (230)
154 KOG0976 Rho/Rac1-interacting s 91.4 39 0.00084 40.6 23.6 17 525-541 287-303 (1265)
155 KOG0976 Rho/Rac1-interacting s 91.3 24 0.00053 42.2 20.6 21 579-599 188-208 (1265)
156 PF15070 GOLGA2L5: Putative go 91.3 38 0.00082 40.2 24.5 29 553-581 163-191 (617)
157 KOG4593 Mitotic checkpoint pro 91.2 38 0.00081 40.2 22.4 6 347-352 10-15 (716)
158 PF05701 WEMBL: Weak chloropla 91.2 34 0.00075 39.7 23.7 38 572-609 345-382 (522)
159 PF00769 ERM: Ezrin/radixin/mo 91.1 8.8 0.00019 40.2 15.8 68 542-609 53-120 (246)
160 PF12718 Tropomyosin_1: Tropom 91.1 3.5 7.7E-05 39.5 11.8 36 576-611 78-113 (143)
161 PRK12704 phosphodiesterase; Pr 91.0 21 0.00045 41.5 20.2 7 603-609 181-187 (520)
162 PF06160 EzrA: Septation ring 91.0 24 0.00052 41.4 21.0 18 587-604 446-463 (560)
163 TIGR03319 YmdA_YtgF conserved 90.9 26 0.00057 40.6 20.9 7 603-609 175-181 (514)
164 PRK06620 hypothetical protein; 90.8 0.18 3.8E-06 51.5 2.9 48 109-160 11-61 (214)
165 PF05010 TACC: Transforming ac 90.7 21 0.00047 36.4 19.0 46 423-468 45-93 (207)
166 PF14992 TMCO5: TMCO5 family 90.6 21 0.00046 37.9 18.0 54 530-583 110-163 (280)
167 PF15619 Lebercilin: Ciliary p 90.6 21 0.00045 36.1 21.7 31 573-603 159-189 (194)
168 PRK01156 chromosome segregatio 90.5 53 0.0011 40.6 24.9 16 145-160 25-40 (895)
169 TIGR03185 DNA_S_dndD DNA sulfu 90.5 45 0.00098 39.8 24.5 16 145-160 30-45 (650)
170 PF10168 Nup88: Nuclear pore c 90.4 17 0.00037 43.8 19.4 36 213-248 367-406 (717)
171 KOG0249 LAR-interacting protei 90.4 17 0.00037 43.0 18.2 33 549-581 222-254 (916)
172 KOG0018 Structural maintenance 90.4 31 0.00068 42.7 21.1 38 372-409 91-128 (1141)
173 PF10174 Cast: RIM-binding pro 90.4 11 0.00025 45.5 17.7 51 551-601 115-165 (775)
174 KOG0995 Centromere-associated 90.3 41 0.00088 39.0 23.8 17 588-604 435-451 (581)
175 PF04156 IncA: IncA protein; 90.2 10 0.00022 37.7 14.8 24 554-577 127-150 (191)
176 COG4487 Uncharacterized protei 90.2 37 0.0008 38.3 24.0 27 592-618 191-217 (438)
177 KOG4807 F-actin binding protei 90.0 23 0.0005 39.0 17.8 81 544-624 415-502 (593)
178 PF06705 SF-assemblin: SF-asse 90.0 27 0.00058 36.4 23.7 77 523-602 122-214 (247)
179 KOG0579 Ste20-like serine/thre 89.9 48 0.001 39.3 23.3 15 458-472 852-866 (1187)
180 KOG0804 Cytoplasmic Zn-finger 89.8 7.9 0.00017 43.3 14.5 15 435-449 327-341 (493)
181 PF04111 APG6: Autophagy prote 89.7 4.6 0.0001 43.8 12.8 83 523-605 51-133 (314)
182 PF15254 CCDC14: Coiled-coil d 89.7 26 0.00057 41.9 19.2 18 633-650 589-606 (861)
183 PF09728 Taxilin: Myosin-like 89.6 34 0.00073 37.1 24.5 32 576-607 235-266 (309)
184 PF13851 GAS: Growth-arrest sp 89.6 25 0.00055 35.6 19.0 41 542-582 92-132 (201)
185 PRK12377 putative replication 89.6 0.33 7.1E-06 50.8 3.7 49 110-160 70-118 (248)
186 PRK05642 DNA replication initi 89.5 0.3 6.6E-06 50.3 3.5 45 109-160 14-62 (234)
187 PF05701 WEMBL: Weak chloropla 89.5 47 0.001 38.6 22.9 7 610-616 436-442 (522)
188 PRK10884 SH3 domain-containing 89.4 4.2 9.2E-05 41.4 11.5 15 482-496 91-105 (206)
189 PRK08084 DNA replication initi 89.4 0.33 7.1E-06 50.1 3.5 46 109-160 17-62 (235)
190 KOG4460 Nuclear pore complex, 89.3 27 0.00059 40.1 18.4 26 122-151 199-224 (741)
191 TIGR03007 pepcterm_ChnLen poly 89.2 39 0.00085 38.6 20.7 25 375-399 119-143 (498)
192 PRK14086 dnaA chromosomal repl 89.2 0.25 5.5E-06 57.7 2.8 49 109-160 283-331 (617)
193 KOG4809 Rab6 GTPase-interactin 89.0 26 0.00057 40.2 18.0 42 563-604 365-406 (654)
194 PF13863 DUF4200: Domain of un 88.9 12 0.00026 34.5 13.4 94 541-635 30-123 (126)
195 PRK09087 hypothetical protein; 88.8 0.28 6.2E-06 50.4 2.6 47 108-160 15-61 (226)
196 PF05911 DUF869: Plant protein 88.7 66 0.0014 39.1 22.5 39 543-581 127-165 (769)
197 TIGR01843 type_I_hlyD type I s 88.6 40 0.00088 37.2 19.7 13 592-604 246-258 (423)
198 TIGR02928 orc1/cdc6 family rep 88.5 0.46 9.9E-06 51.8 4.1 47 113-160 10-57 (365)
199 TIGR01005 eps_transp_fam exopo 88.4 45 0.00098 40.4 21.4 16 337-352 80-95 (754)
200 PRK00411 cdc6 cell division co 88.3 0.5 1.1E-05 52.1 4.3 49 111-160 23-72 (394)
201 COG3883 Uncharacterized protei 88.3 37 0.00081 35.9 23.3 49 561-609 180-228 (265)
202 PF08614 ATG16: Autophagy prot 88.3 3.6 7.7E-05 41.3 10.1 77 525-601 98-174 (194)
203 KOG0811 SNARE protein PEP12/VA 88.3 38 0.00083 36.0 24.9 51 555-605 178-228 (269)
204 PF04156 IncA: IncA protein; 88.2 18 0.00038 35.9 15.0 32 568-599 155-186 (191)
205 PRK08116 hypothetical protein; 88.2 0.35 7.5E-06 51.1 2.8 50 109-160 80-131 (268)
206 PF09738 DUF2051: Double stran 88.1 6.8 0.00015 42.2 12.5 83 523-605 78-160 (302)
207 PF07111 HCR: Alpha helical co 88.1 64 0.0014 38.4 23.4 81 524-604 171-261 (739)
208 PRK07952 DNA replication prote 88.1 0.48 1E-05 49.4 3.8 50 109-160 67-116 (244)
209 PF05483 SCP-1: Synaptonemal c 88.0 65 0.0014 38.2 23.9 80 522-604 608-687 (786)
210 PRK00106 hypothetical protein; 88.0 60 0.0013 37.9 26.4 8 593-600 189-196 (535)
211 PRK06526 transposase; Provisio 88.0 0.33 7.2E-06 50.9 2.5 45 110-161 72-116 (254)
212 TIGR02680 conserved hypothetic 87.8 81 0.0018 41.1 24.0 16 145-160 26-41 (1353)
213 COG2433 Uncharacterized conser 87.7 5.1 0.00011 46.4 11.7 17 171-187 163-179 (652)
214 PRK00106 hypothetical protein; 87.7 62 0.0013 37.7 21.4 7 603-609 196-202 (535)
215 PF15450 DUF4631: Domain of un 87.6 59 0.0013 37.4 21.3 109 481-602 355-465 (531)
216 TIGR00362 DnaA chromosomal rep 87.6 0.45 9.9E-06 53.0 3.5 50 108-160 104-153 (405)
217 PRK14088 dnaA chromosomal repl 87.6 0.43 9.3E-06 54.0 3.3 49 108-160 99-147 (440)
218 PRK10929 putative mechanosensi 87.6 45 0.00097 42.2 20.6 52 549-600 179-230 (1109)
219 KOG0994 Extracellular matrix g 87.5 40 0.00086 42.1 19.1 78 524-601 1586-1670(1758)
220 KOG0810 SNARE protein Syntaxin 87.5 46 0.00099 35.9 25.2 78 550-631 206-283 (297)
221 PF05010 TACC: Transforming ac 87.5 36 0.00079 34.7 24.3 72 528-609 117-192 (207)
222 PF04111 APG6: Autophagy prote 87.4 8.6 0.00019 41.7 13.0 85 525-609 46-130 (314)
223 PF11559 ADIP: Afadin- and alp 87.4 15 0.00032 35.2 13.3 70 530-602 81-150 (151)
224 COG4372 Uncharacterized protei 87.4 52 0.0011 36.4 23.3 52 549-600 216-267 (499)
225 KOG0972 Huntingtin interacting 87.4 17 0.00038 38.5 14.4 77 531-607 268-357 (384)
226 PF15619 Lebercilin: Ciliary p 87.4 35 0.00076 34.5 21.6 26 554-579 122-147 (194)
227 KOG0979 Structural maintenance 87.3 72 0.0016 39.5 21.2 46 542-587 310-355 (1072)
228 COG2433 Uncharacterized conser 87.3 8.8 0.00019 44.5 13.2 13 377-389 288-301 (652)
229 PF15035 Rootletin: Ciliary ro 87.1 20 0.00043 35.9 14.3 59 530-588 61-119 (182)
230 COG4026 Uncharacterized protei 87.1 6 0.00013 40.3 10.5 70 529-605 135-204 (290)
231 PRK00149 dnaA chromosomal repl 87.1 0.48 1E-05 53.7 3.3 50 108-160 116-165 (450)
232 KOG1103 Predicted coiled-coil 87.0 50 0.0011 35.9 18.8 19 336-354 56-74 (561)
233 TIGR03420 DnaA_homol_Hda DnaA 86.8 0.59 1.3E-05 47.1 3.5 46 109-160 10-55 (226)
234 smart00787 Spc7 Spc7 kinetocho 86.8 51 0.0011 35.8 23.0 53 550-602 211-263 (312)
235 PF04851 ResIII: Type III rest 86.5 0.52 1.1E-05 45.2 2.8 35 123-161 8-43 (184)
236 PF09789 DUF2353: Uncharacteri 86.1 56 0.0012 35.6 23.2 76 534-609 131-213 (319)
237 KOG0946 ER-Golgi vesicle-tethe 86.1 89 0.0019 37.8 24.2 8 354-361 522-529 (970)
238 PF14992 TMCO5: TMCO5 family 86.0 50 0.0011 35.2 17.2 25 578-602 144-168 (280)
239 PRK08939 primosomal protein Dn 85.8 0.57 1.2E-05 50.5 2.9 50 111-161 124-174 (306)
240 KOG4674 Uncharacterized conser 85.8 76 0.0017 41.9 21.5 47 553-602 929-975 (1822)
241 PRK06835 DNA replication prote 85.7 0.43 9.3E-06 52.0 1.9 35 124-160 166-200 (329)
242 PF10168 Nup88: Nuclear pore c 85.5 95 0.0021 37.6 23.0 12 64-75 125-136 (717)
243 PRK14087 dnaA chromosomal repl 85.5 0.58 1.3E-05 53.1 2.9 48 110-160 111-158 (450)
244 PF11559 ADIP: Afadin- and alp 85.4 13 0.00029 35.5 11.9 73 530-602 39-111 (151)
245 PF15066 CAGE1: Cancer-associa 85.3 73 0.0016 36.1 22.5 25 559-583 480-504 (527)
246 PF10498 IFT57: Intra-flagella 85.2 30 0.00065 38.3 15.9 60 546-605 283-348 (359)
247 PF05266 DUF724: Protein of un 85.1 15 0.00033 37.0 12.4 52 560-611 127-178 (190)
248 PF05557 MAD: Mitotic checkpoi 85.1 0.27 5.9E-06 59.1 0.0 46 527-572 169-214 (722)
249 PF10498 IFT57: Intra-flagella 85.0 25 0.00053 39.0 15.1 6 155-160 57-62 (359)
250 cd00009 AAA The AAA+ (ATPases 85.0 0.75 1.6E-05 41.6 2.9 26 135-160 11-36 (151)
251 PTZ00112 origin recognition co 85.0 1.4 3.1E-05 53.5 5.8 21 140-160 778-798 (1164)
252 KOG2264 Exostosin EXT1L [Signa 85.0 4.6 0.0001 46.1 9.4 59 546-604 89-147 (907)
253 PF06705 SF-assemblin: SF-asse 84.8 53 0.0011 34.2 23.2 66 527-595 155-228 (247)
254 PF11932 DUF3450: Protein of u 84.6 18 0.0004 37.7 13.4 24 560-583 73-96 (251)
255 PRK08181 transposase; Validate 84.5 1 2.2E-05 47.7 4.0 43 114-161 81-124 (269)
256 PLN02939 transferase, transfer 84.5 61 0.0013 40.3 19.2 16 589-604 355-370 (977)
257 PF09755 DUF2046: Uncharacteri 84.5 64 0.0014 34.9 23.2 72 527-601 227-298 (310)
258 PF09304 Cortex-I_coil: Cortex 84.4 29 0.00062 31.7 12.4 46 548-593 42-87 (107)
259 PF10186 Atg14: UV radiation r 84.4 40 0.00088 35.4 16.2 11 641-651 212-222 (302)
260 PF10481 CENP-F_N: Cenp-F N-te 84.4 33 0.00071 36.3 14.5 58 575-635 99-156 (307)
261 KOG1899 LAR transmembrane tyro 84.4 60 0.0013 38.0 17.8 14 387-400 104-117 (861)
262 TIGR03007 pepcterm_ChnLen poly 84.1 84 0.0018 35.9 26.2 13 339-351 78-90 (498)
263 COG5185 HEC1 Protein involved 83.9 84 0.0018 35.7 19.4 28 555-582 373-400 (622)
264 PRK08903 DnaA regulatory inact 83.7 1.1 2.3E-05 45.6 3.7 47 109-160 13-59 (227)
265 PRK10869 recombination and rep 83.7 59 0.0013 38.1 18.4 17 141-160 23-39 (553)
266 PF14073 Cep57_CLD: Centrosome 83.6 50 0.0011 32.9 20.1 53 550-602 120-172 (178)
267 KOG0982 Centrosomal protein Nu 83.5 83 0.0018 35.4 18.8 52 527-578 316-367 (502)
268 PF14389 Lzipper-MIP1: Leucine 83.3 3.9 8.5E-05 35.9 6.5 76 523-601 9-84 (88)
269 PRK08727 hypothetical protein; 83.3 0.9 2E-05 46.8 2.9 44 109-160 14-58 (233)
270 TIGR03017 EpsF chain length de 83.2 84 0.0018 35.3 21.3 16 337-352 75-90 (444)
271 TIGR02680 conserved hypothetic 82.9 1.7E+02 0.0036 38.3 24.8 31 571-601 935-965 (1353)
272 KOG4593 Mitotic checkpoint pro 82.6 1.1E+02 0.0025 36.3 25.3 9 393-401 57-65 (716)
273 PF09787 Golgin_A5: Golgin sub 82.5 57 0.0012 37.8 17.5 11 428-438 122-132 (511)
274 PF11932 DUF3450: Protein of u 82.5 17 0.00037 37.9 12.2 43 553-595 52-94 (251)
275 KOG0577 Serine/threonine prote 82.4 1.1E+02 0.0024 36.1 22.9 34 450-483 493-526 (948)
276 PF07106 TBPIP: Tat binding pr 82.4 4.7 0.0001 39.4 7.5 36 524-559 74-109 (169)
277 KOG0978 E3 ubiquitin ligase in 82.4 1.2E+02 0.0026 36.4 24.1 62 555-616 564-625 (698)
278 COG5185 HEC1 Protein involved 82.2 97 0.0021 35.2 18.6 57 546-602 378-434 (622)
279 COG4026 Uncharacterized protei 82.0 11 0.00024 38.5 9.8 51 550-600 170-221 (290)
280 PF09730 BicD: Microtubule-ass 81.7 1.3E+02 0.0028 36.4 23.3 79 525-603 100-181 (717)
281 PF14915 CCDC144C: CCDC144C pr 81.7 80 0.0017 33.9 19.1 146 438-608 4-160 (305)
282 COG1474 CDC6 Cdc6-related prot 81.5 1.3 2.8E-05 49.0 3.5 25 136-160 34-59 (366)
283 TIGR02231 conserved hypothetic 81.5 14 0.00031 42.8 12.1 46 560-605 127-172 (525)
284 TIGR03185 DNA_S_dndD DNA sulfu 81.5 1.3E+02 0.0027 36.0 23.8 9 328-336 168-176 (650)
285 PF13245 AAA_19: Part of AAA d 81.4 0.86 1.9E-05 38.8 1.6 25 135-160 3-27 (76)
286 COG1484 DnaC DNA replication p 81.4 1.4 3.1E-05 46.1 3.6 50 109-161 74-123 (254)
287 PF13166 AAA_13: AAA domain 81.2 1.3E+02 0.0028 36.0 25.6 18 142-159 15-32 (712)
288 PF15290 Syntaphilin: Golgi-lo 81.0 13 0.00029 39.2 10.3 61 523-585 83-145 (305)
289 cd00046 DEXDc DEAD-like helica 81.0 0.68 1.5E-05 41.4 0.9 15 146-160 3-17 (144)
290 PF03904 DUF334: Domain of unk 80.9 21 0.00046 36.6 11.5 38 617-654 148-186 (230)
291 PF15254 CCDC14: Coiled-coil d 80.9 1.4E+02 0.003 36.1 20.0 18 585-602 536-553 (861)
292 PF05384 DegS: Sensor protein 80.8 56 0.0012 32.0 14.0 109 517-628 22-138 (159)
293 PF01576 Myosin_tail_1: Myosin 80.8 0.5 1.1E-05 57.8 0.0 36 571-606 299-335 (859)
294 TIGR03017 EpsF chain length de 80.8 1E+02 0.0022 34.6 21.5 25 375-399 129-153 (444)
295 PF10234 Cluap1: Clusterin-ass 80.8 82 0.0018 33.5 16.9 62 522-583 197-258 (267)
296 PF07111 HCR: Alpha helical co 80.8 1.3E+02 0.0029 35.9 24.0 26 312-346 52-77 (739)
297 PF15397 DUF4618: Domain of un 80.7 81 0.0018 33.3 21.0 54 549-602 171-224 (258)
298 PRK10929 putative mechanosensi 80.5 1.2E+02 0.0025 38.7 20.0 10 391-400 49-58 (1109)
299 PF01576 Myosin_tail_1: Myosin 80.5 0.53 1.1E-05 57.7 0.0 42 426-467 493-534 (859)
300 PF10146 zf-C4H2: Zinc finger- 80.4 39 0.00085 35.1 13.6 70 544-613 33-102 (230)
301 COG0593 DnaA ATPase involved i 80.2 1.3 2.9E-05 49.5 3.0 50 108-160 81-130 (408)
302 PF10473 CENP-F_leu_zip: Leuci 80.1 58 0.0012 31.3 14.9 104 480-600 20-123 (140)
303 PF07058 Myosin_HC-like: Myosi 79.8 85 0.0018 33.8 15.8 44 561-604 112-162 (351)
304 PF08826 DMPK_coil: DMPK coile 79.7 25 0.00055 28.8 9.5 56 534-603 2-57 (61)
305 KOG4809 Rab6 GTPase-interactin 79.6 1.2E+02 0.0025 35.2 17.7 35 477-511 359-393 (654)
306 PF01935 DUF87: Domain of unkn 79.6 0.76 1.6E-05 46.7 0.8 15 146-160 26-40 (229)
307 COG0419 SbcC ATPase involved i 79.4 1.7E+02 0.0038 36.4 23.3 18 143-160 25-42 (908)
308 TIGR01010 BexC_CtrB_KpsE polys 79.4 1E+02 0.0022 33.7 19.9 15 337-351 72-86 (362)
309 PF04102 SlyX: SlyX; InterPro 79.2 8.6 0.00019 32.1 6.9 52 548-599 2-53 (69)
310 TIGR03495 phage_LysB phage lys 79.1 34 0.00073 32.6 11.6 96 528-623 18-118 (135)
311 TIGR02538 type_IV_pilB type IV 79.1 1 2.2E-05 52.6 1.8 28 134-161 307-334 (564)
312 KOG4677 Golgi integral membran 79.0 1E+02 0.0022 34.9 16.7 33 570-602 308-340 (554)
313 PF13401 AAA_22: AAA domain; P 78.9 0.72 1.6E-05 42.0 0.4 18 143-160 4-21 (131)
314 PF09304 Cortex-I_coil: Cortex 78.9 52 0.0011 30.0 12.7 53 531-583 39-91 (107)
315 TIGR02533 type_II_gspE general 78.9 1.2 2.5E-05 51.2 2.1 28 134-161 233-260 (486)
316 PRK10436 hypothetical protein; 78.9 1.1 2.3E-05 51.2 1.8 27 135-161 210-236 (462)
317 PF13166 AAA_13: AAA domain 78.8 1.5E+02 0.0033 35.4 24.0 40 563-602 416-455 (712)
318 PF07851 TMPIT: TMPIT-like pro 78.7 19 0.00041 39.2 11.1 78 528-605 3-81 (330)
319 PF13870 DUF4201: Domain of un 78.4 72 0.0015 31.4 15.9 74 525-598 59-132 (177)
320 PF09789 DUF2353: Uncharacteri 78.4 93 0.002 33.9 16.1 44 522-565 72-115 (319)
321 KOG0926 DEAH-box RNA helicase 78.3 1.4 3E-05 52.4 2.5 33 142-174 270-308 (1172)
322 PF14197 Cep57_CLD_2: Centroso 78.2 25 0.00053 29.6 9.3 60 548-607 3-62 (69)
323 PF09731 Mitofilin: Mitochondr 78.2 1.5E+02 0.0032 34.9 23.9 59 545-604 366-424 (582)
324 PF00270 DEAD: DEAD/DEAH box h 78.1 1.4 3E-05 41.8 2.1 24 135-160 8-31 (169)
325 PF07106 TBPIP: Tat binding pr 77.9 20 0.00043 35.1 10.2 53 552-604 81-135 (169)
326 PRK06921 hypothetical protein; 77.4 2.2 4.8E-05 45.0 3.6 35 125-160 97-134 (266)
327 KOG0249 LAR-interacting protei 77.4 1.2E+02 0.0027 36.2 17.4 38 526-563 220-257 (916)
328 smart00382 AAA ATPases associa 77.4 1 2.2E-05 40.1 0.9 17 144-160 3-19 (148)
329 COG1382 GimC Prefoldin, chaper 77.3 38 0.00083 31.5 11.1 41 524-564 8-48 (119)
330 cd01131 PilT Pilus retraction 77.3 1 2.2E-05 45.1 1.0 18 143-160 1-18 (198)
331 PF06428 Sec2p: GDP/GTP exchan 77.1 18 0.00039 32.7 8.7 62 538-605 3-64 (100)
332 TIGR01420 pilT_fam pilus retra 77.1 1.4 3E-05 48.2 2.0 26 135-160 114-139 (343)
333 TIGR02525 plasmid_TraJ plasmid 77.1 1.5 3.1E-05 48.7 2.1 19 142-160 148-166 (372)
334 PF12329 TMF_DNA_bd: TATA elem 77.0 21 0.00046 30.3 8.7 52 522-573 5-56 (74)
335 PF10234 Cluap1: Clusterin-ass 76.9 66 0.0014 34.2 14.1 63 552-614 185-248 (267)
336 PF13604 AAA_30: AAA domain; P 76.8 1.4 3.1E-05 44.1 1.8 27 134-160 9-35 (196)
337 PF05673 DUF815: Protein of un 76.8 0.89 1.9E-05 47.4 0.4 125 110-271 23-155 (249)
338 PF05970 PIF1: PIF1-like helic 76.7 2.1 4.6E-05 47.1 3.4 36 121-160 4-39 (364)
339 PF12325 TMF_TATA_bd: TATA ele 76.7 62 0.0013 30.2 12.4 41 543-583 68-108 (120)
340 KOG2010 Double stranded RNA bi 76.4 17 0.00038 39.0 9.6 88 521-608 110-198 (405)
341 PF12846 AAA_10: AAA-like doma 76.1 1.1 2.4E-05 46.6 0.9 18 143-160 1-18 (304)
342 COG5008 PilU Tfp pilus assembl 75.9 2 4.4E-05 45.3 2.7 30 131-160 115-144 (375)
343 TIGR02524 dot_icm_DotB Dot/Icm 75.7 1.6 3.5E-05 48.1 2.1 20 141-160 132-151 (358)
344 PF00437 T2SE: Type II/IV secr 75.2 1.5 3.2E-05 45.9 1.5 18 143-160 127-144 (270)
345 PRK09183 transposase/IS protei 75.0 2 4.4E-05 45.0 2.5 44 113-161 77-120 (259)
346 PF14988 DUF4515: Domain of un 74.9 1E+02 0.0022 31.4 24.4 39 569-607 161-199 (206)
347 KOG4360 Uncharacterized coiled 74.9 93 0.002 35.7 15.2 12 635-646 358-369 (596)
348 PRK00295 hypothetical protein; 74.8 19 0.0004 30.2 7.7 51 548-598 3-53 (68)
349 PRK09343 prefoldin subunit bet 74.7 70 0.0015 29.7 12.3 80 525-604 10-104 (121)
350 PF14362 DUF4407: Domain of un 74.6 1.1E+02 0.0024 32.6 15.8 22 628-649 266-287 (301)
351 KOG2543 Origin recognition com 74.4 1.6 3.6E-05 48.0 1.6 38 144-201 31-68 (438)
352 TIGR00634 recN DNA repair prot 74.3 1.1E+02 0.0024 35.8 16.9 14 147-160 26-39 (563)
353 PF01695 IstB_IS21: IstB-like 74.2 2.2 4.8E-05 42.2 2.4 17 144-160 48-64 (178)
354 PF12004 DUF3498: Domain of un 74.2 1 2.2E-05 51.4 0.0 110 481-603 373-490 (495)
355 PRK02119 hypothetical protein; 74.2 19 0.0004 30.6 7.6 51 547-597 6-56 (73)
356 PRK12422 chromosomal replicati 74.0 2.8 6.1E-05 47.6 3.5 50 108-160 105-158 (445)
357 PRK02793 phi X174 lysis protei 73.9 19 0.0004 30.5 7.6 51 548-598 6-56 (72)
358 cd01129 PulE-GspE PulE/GspE Th 73.8 2 4.4E-05 45.2 2.1 26 135-160 72-97 (264)
359 PF12001 DUF3496: Domain of un 73.8 21 0.00045 32.9 8.3 62 546-607 3-65 (111)
360 PF05529 Bap31: B-cell recepto 73.8 26 0.00057 34.9 10.0 35 564-598 154-188 (192)
361 PRK04325 hypothetical protein; 73.7 19 0.00041 30.6 7.6 49 548-596 7-55 (74)
362 PLN03229 acetyl-coenzyme A car 73.4 1.9E+02 0.0042 34.9 18.1 74 528-605 648-732 (762)
363 PF09753 Use1: Membrane fusion 73.3 1.2E+02 0.0027 31.6 15.8 20 623-642 228-247 (251)
364 TIGR03015 pepcterm_ATPase puta 73.2 2.3 5E-05 44.0 2.4 25 136-160 36-60 (269)
365 PF05622 HOOK: HOOK protein; 73.1 1.1 2.4E-05 53.8 0.0 51 524-574 365-415 (713)
366 PRK03947 prefoldin subunit alp 73.0 78 0.0017 29.8 12.6 41 569-609 92-132 (140)
367 PF03148 Tektin: Tektin family 73.0 1.6E+02 0.0035 32.8 25.9 56 561-616 321-378 (384)
368 PF05266 DUF724: Protein of un 72.8 46 0.00099 33.5 11.3 38 533-570 114-151 (190)
369 PRK00736 hypothetical protein; 72.8 20 0.00044 30.0 7.4 49 548-596 3-51 (68)
370 PF10212 TTKRSYEDQ: Predicted 72.6 1.8E+02 0.0039 33.7 17.1 79 526-604 417-506 (518)
371 PF05622 HOOK: HOOK protein; 72.3 1.2 2.6E-05 53.5 0.0 30 570-599 390-419 (713)
372 PRK11519 tyrosine kinase; Prov 72.2 2.1E+02 0.0046 34.6 18.9 13 133-145 98-110 (719)
373 PF13514 AAA_27: AAA domain 72.2 2.9E+02 0.0062 35.3 21.2 9 111-119 87-95 (1111)
374 PRK00846 hypothetical protein; 72.1 24 0.00051 30.4 7.7 56 545-600 8-63 (77)
375 KOG0239 Kinesin (KAR3 subfamil 71.9 1.3E+02 0.0029 36.1 16.7 71 531-601 243-316 (670)
376 PRK04406 hypothetical protein; 71.9 21 0.00046 30.5 7.5 50 547-596 8-57 (75)
377 KOG1962 B-cell receptor-associ 71.7 28 0.00062 35.6 9.6 47 554-600 162-208 (216)
378 PF12325 TMF_TATA_bd: TATA ele 71.6 65 0.0014 30.1 11.2 39 524-562 25-63 (120)
379 PF03962 Mnd1: Mnd1 family; I 71.5 41 0.00089 33.8 10.7 54 549-602 109-166 (188)
380 smart00053 DYNc Dynamin, GTPas 71.4 4.5 9.7E-05 42.2 4.0 15 146-160 29-43 (240)
381 PF15290 Syntaphilin: Golgi-lo 71.4 82 0.0018 33.5 12.9 18 577-594 148-165 (305)
382 PF10212 TTKRSYEDQ: Predicted 71.3 2E+02 0.0044 33.3 22.9 56 544-599 414-469 (518)
383 KOG1937 Uncharacterized conser 71.2 1.9E+02 0.0041 32.9 19.8 182 422-619 248-431 (521)
384 PF13479 AAA_24: AAA domain 71.2 2 4.4E-05 43.6 1.3 19 143-161 3-21 (213)
385 PLN00020 ribulose bisphosphate 71.0 4.1 8.8E-05 45.2 3.7 53 108-160 109-165 (413)
386 PF10267 Tmemb_cc2: Predicted 71.0 1.8E+02 0.004 32.6 16.8 33 442-478 228-260 (395)
387 COG3883 Uncharacterized protei 70.7 1.5E+02 0.0032 31.5 23.1 8 392-399 25-32 (265)
388 KOG0989 Replication factor C, 70.7 3.2 7E-05 44.6 2.7 28 133-160 46-74 (346)
389 COG4477 EzrA Negative regulato 70.6 2.1E+02 0.0046 33.2 23.5 78 524-601 349-426 (570)
390 PF01637 Arch_ATPase: Archaeal 70.4 2.2 4.8E-05 42.4 1.4 27 134-160 11-37 (234)
391 PF07889 DUF1664: Protein of u 70.4 63 0.0014 30.5 10.9 59 545-603 63-121 (126)
392 PF00580 UvrD-helicase: UvrD/R 70.4 4.1 8.9E-05 42.6 3.5 19 142-160 12-30 (315)
393 PF00957 Synaptobrevin: Synapt 70.2 50 0.0011 28.6 9.8 33 551-583 4-36 (89)
394 PF04012 PspA_IM30: PspA/IM30 70.0 1.3E+02 0.0028 30.5 19.6 13 588-600 168-180 (221)
395 PF12761 End3: Actin cytoskele 69.9 38 0.00082 34.2 9.9 59 547-605 136-194 (195)
396 PF05483 SCP-1: Synaptonemal c 69.7 2.5E+02 0.0054 33.6 24.2 44 566-609 351-394 (786)
397 KOG1265 Phospholipase C [Lipid 69.3 2.9E+02 0.0062 34.2 20.7 21 332-352 939-959 (1189)
398 PF06785 UPF0242: Uncharacteri 69.2 97 0.0021 33.8 13.1 118 485-604 57-174 (401)
399 PF13086 AAA_11: AAA domain; P 69.0 2.9 6.3E-05 41.5 2.0 25 135-160 10-34 (236)
400 PF12072 DUF3552: Domain of un 68.6 1.4E+02 0.003 30.2 23.6 10 591-600 168-177 (201)
401 PF00004 AAA: ATPase family as 68.5 2.1 4.5E-05 38.7 0.7 15 146-160 1-15 (132)
402 PRK03992 proteasome-activating 68.4 2.1 4.5E-05 47.7 0.8 50 110-159 127-181 (389)
403 PF06818 Fez1: Fez1; InterPro 68.3 46 0.00099 33.8 10.1 70 533-602 35-104 (202)
404 cd01378 MYSc_type_I Myosin mot 68.2 23 0.00049 42.5 9.4 35 125-160 68-103 (674)
405 TIGR02782 TrbB_P P-type conjug 68.2 2.8 6E-05 45.1 1.7 27 133-160 123-149 (299)
406 cd01382 MYSc_type_VI Myosin mo 68.0 22 0.00048 42.9 9.4 34 126-160 74-108 (717)
407 KOG0288 WD40 repeat protein Ti 68.0 1E+02 0.0023 34.5 13.4 14 549-562 54-67 (459)
408 PF13207 AAA_17: AAA domain; P 67.8 2.3 4.9E-05 38.3 0.8 16 145-160 1-16 (121)
409 KOG2264 Exostosin EXT1L [Signa 67.6 32 0.00069 39.7 9.7 54 538-591 95-148 (907)
410 KOG4403 Cell surface glycoprot 67.6 1.3E+02 0.0029 33.8 14.1 36 529-569 293-328 (575)
411 PF12777 MT: Microtubule-bindi 67.4 23 0.0005 38.8 8.7 54 549-602 227-280 (344)
412 KOG4484 Uncharacterized conser 67.3 75 0.0016 31.3 10.9 101 524-632 26-133 (199)
413 PF13191 AAA_16: AAA ATPase do 67.2 2.2 4.8E-05 41.1 0.7 22 139-160 20-41 (185)
414 TIGR02338 gimC_beta prefoldin, 67.0 1E+02 0.0022 28.0 11.6 34 570-603 66-99 (110)
415 PF04899 MbeD_MobD: MbeD/MobD 66.9 70 0.0015 27.0 9.4 32 573-604 30-61 (70)
416 KOG0163 Myosin class VI heavy 66.8 3E+02 0.0065 33.4 20.1 155 392-588 846-1011(1259)
417 PF12709 Kinetocho_Slk19: Cent 66.6 83 0.0018 27.7 10.0 38 553-590 45-82 (87)
418 PRK13894 conjugal transfer ATP 66.4 3.6 7.9E-05 44.6 2.2 27 133-160 139-165 (319)
419 KOG0993 Rab5 GTPase effector R 66.2 2.1E+02 0.0045 32.1 15.2 148 421-579 344-491 (542)
420 PF00448 SRP54: SRP54-type pro 65.9 2.5 5.4E-05 42.5 0.7 16 145-160 3-18 (196)
421 TIGR00020 prfB peptide chain r 65.8 55 0.0012 36.3 11.1 83 582-665 96-200 (364)
422 PRK10361 DNA recombination pro 65.7 2.6E+02 0.0056 32.3 23.4 34 584-617 164-198 (475)
423 PRK12402 replication factor C 65.5 5 0.00011 43.0 3.0 42 111-160 12-53 (337)
424 PF04871 Uso1_p115_C: Uso1 / p 65.5 1E+02 0.0023 29.3 11.6 34 574-607 80-113 (136)
425 TIGR01242 26Sp45 26S proteasom 65.4 2.5 5.4E-05 46.5 0.7 51 110-160 118-173 (364)
426 PHA00729 NTP-binding motif con 65.4 5.3 0.00012 41.3 3.0 30 131-160 5-34 (226)
427 PTZ00361 26 proteosome regulat 65.3 8.6 0.00019 43.6 4.9 50 111-160 180-234 (438)
428 PF05557 MAD: Mitotic checkpoi 65.2 4.2 9.1E-05 49.0 2.6 26 555-580 508-533 (722)
429 PF14712 Snapin_Pallidin: Snap 65.2 93 0.002 27.0 11.9 80 525-604 10-90 (92)
430 PTZ00121 MAEBL; Provisional 65.1 4.3E+02 0.0093 34.6 23.0 14 340-353 942-955 (2084)
431 TIGR02977 phageshock_pspA phag 65.1 1.7E+02 0.0036 29.9 22.0 38 528-565 98-135 (219)
432 smart00487 DEXDc DEAD-like hel 64.9 4.5 9.8E-05 38.4 2.3 17 144-160 25-41 (201)
433 PF13863 DUF4200: Domain of un 64.9 1.1E+02 0.0025 27.9 13.2 43 535-577 66-108 (126)
434 PF09744 Jnk-SapK_ap_N: JNK_SA 64.7 1.5E+02 0.0032 29.1 14.2 70 533-602 61-134 (158)
435 PF15066 CAGE1: Cancer-associa 64.6 2.6E+02 0.0056 32.0 22.2 17 482-498 388-404 (527)
436 KOG1962 B-cell receptor-associ 64.6 60 0.0013 33.3 10.3 50 532-581 161-210 (216)
437 KOG0809 SNARE protein TLG2/Syn 64.3 2.1E+02 0.0045 30.8 17.8 77 549-631 217-294 (305)
438 COG1201 Lhr Lhr-like helicases 64.2 11 0.00023 46.0 5.6 23 135-159 31-53 (814)
439 PRK15424 propionate catabolism 63.9 4.9 0.00011 46.7 2.7 123 110-253 215-353 (538)
440 PRK04406 hypothetical protein; 63.8 47 0.001 28.4 8.0 54 550-603 4-57 (75)
441 TIGR00631 uvrb excinuclease AB 63.8 5.5 0.00012 47.5 3.2 90 111-205 2-98 (655)
442 PF02562 PhoH: PhoH-like prote 63.7 5 0.00011 40.9 2.4 19 142-160 18-36 (205)
443 PF06818 Fez1: Fez1; InterPro 63.6 1.1E+02 0.0025 31.1 11.9 55 529-583 52-106 (202)
444 PRK13182 racA polar chromosome 63.6 38 0.00083 33.7 8.5 56 545-600 87-147 (175)
445 PF05278 PEARLI-4: Arabidopsis 63.6 2.1E+02 0.0045 30.5 16.0 31 569-599 212-242 (269)
446 PRK13729 conjugal transfer pil 63.6 29 0.00063 39.6 8.5 24 579-602 98-121 (475)
447 KOG2991 Splicing regulator [RN 63.5 2E+02 0.0044 30.3 22.0 73 526-605 233-305 (330)
448 KOG1853 LIS1-interacting prote 63.5 2E+02 0.0043 30.3 20.4 78 531-609 93-181 (333)
449 PF05700 BCAS2: Breast carcino 63.4 1.4E+02 0.0029 30.7 12.9 34 550-583 175-208 (221)
450 PF06005 DUF904: Protein of un 63.4 93 0.002 26.4 10.8 27 571-597 39-65 (72)
451 PF14197 Cep57_CLD_2: Centroso 63.3 80 0.0017 26.5 9.1 56 528-583 4-59 (69)
452 PF01580 FtsK_SpoIIIE: FtsK/Sp 63.2 2.8 6E-05 41.9 0.5 16 145-160 40-55 (205)
453 PRK12723 flagellar biosynthesi 63.2 7.8 0.00017 43.3 4.0 18 143-160 174-191 (388)
454 PRK13833 conjugal transfer pro 63.1 4.1 9E-05 44.3 1.8 27 133-160 135-161 (323)
455 KOG4348 Adaptor protein CMS/SE 62.9 24 0.00053 39.4 7.5 52 550-601 569-624 (627)
456 cd01130 VirB11-like_ATPase Typ 62.9 5 0.00011 39.6 2.3 27 133-160 16-42 (186)
457 TIGR03752 conj_TIGR03752 integ 62.7 70 0.0015 36.5 11.3 81 522-602 59-140 (472)
458 PHA02544 44 clamp loader, smal 62.7 5.4 0.00012 42.5 2.6 21 140-160 39-60 (316)
459 COG4962 CpaF Flp pilus assembl 62.6 4.8 0.0001 44.0 2.2 26 134-160 165-190 (355)
460 PF13870 DUF4201: Domain of un 62.6 1.6E+02 0.0035 28.9 18.4 8 592-599 159-166 (177)
461 TIGR00635 ruvB Holliday juncti 62.5 5.1 0.00011 42.5 2.4 43 117-160 3-47 (305)
462 PF12777 MT: Microtubule-bindi 62.5 19 0.00041 39.5 6.8 30 547-576 239-268 (344)
463 PF08647 BRE1: BRE1 E3 ubiquit 62.1 1.2E+02 0.0025 27.1 11.3 51 528-578 30-80 (96)
464 PF00910 RNA_helicase: RNA hel 62.1 2.8 6.1E-05 37.7 0.3 15 146-160 1-15 (107)
465 TIGR03499 FlhF flagellar biosy 61.8 8.6 0.00019 40.9 4.0 17 144-160 195-211 (282)
466 PF00063 Myosin_head: Myosin h 61.8 5.9 0.00013 47.4 3.0 36 125-160 67-102 (689)
467 PF08657 DASH_Spc34: DASH comp 61.8 37 0.0008 35.9 8.5 71 533-603 177-257 (259)
468 PRK00578 prfB peptide chain re 61.7 76 0.0016 35.3 11.2 85 581-666 95-201 (367)
469 PF14257 DUF4349: Domain of un 61.7 54 0.0012 34.3 9.8 34 569-602 160-193 (262)
470 PF13851 GAS: Growth-arrest sp 61.5 1.9E+02 0.0041 29.3 21.6 6 550-555 121-126 (201)
471 TIGR02894 DNA_bind_RsfA transc 61.4 45 0.00098 32.6 8.3 21 474-494 51-71 (161)
472 PF06156 DUF972: Protein of un 61.3 42 0.00092 30.6 7.7 52 554-605 5-56 (107)
473 KOG3478 Prefoldin subunit 6, K 61.3 1.4E+02 0.0029 27.6 11.2 31 572-602 70-100 (120)
474 TIGR01817 nifA Nif-specific re 61.2 5.7 0.00012 46.0 2.7 119 110-251 192-319 (534)
475 PRK10869 recombination and rep 61.1 3.3E+02 0.0071 32.0 21.9 72 529-600 296-370 (553)
476 PF05496 RuvB_N: Holliday junc 61.0 11 0.00023 39.1 4.3 43 117-160 23-67 (233)
477 PRK11281 hypothetical protein; 61.0 4.6E+02 0.01 33.6 24.1 11 391-401 64-74 (1113)
478 KOG2911 Uncharacterized conser 60.9 2.1E+02 0.0046 32.3 14.4 47 436-482 243-289 (439)
479 cd00268 DEADc DEAD-box helicas 60.8 5.8 0.00013 39.1 2.3 23 136-160 31-53 (203)
480 KOG2685 Cystoskeletal protein 60.8 2.9E+02 0.0062 31.2 18.4 55 562-616 349-405 (421)
481 KOG3091 Nuclear pore complex, 60.7 2.9E+02 0.0062 31.8 15.4 17 419-435 335-351 (508)
482 PF05276 SH3BP5: SH3 domain-bi 60.6 2.2E+02 0.0048 29.8 20.8 18 542-559 148-165 (239)
483 COG1842 PspA Phage shock prote 60.6 2.1E+02 0.0046 29.6 20.6 41 459-499 67-107 (225)
484 KOG0979 Structural maintenance 60.4 4.3E+02 0.0094 33.1 20.7 14 147-160 46-59 (1072)
485 PRK05022 anaerobic nitric oxid 60.2 6.6 0.00014 45.3 2.9 117 112-251 185-310 (509)
486 PF07200 Mod_r: Modifier of ru 60.1 1.3E+02 0.0028 28.6 11.4 84 527-611 32-115 (150)
487 PF05615 THOC7: Tho complex su 60.1 1E+02 0.0023 29.0 10.6 66 524-589 48-113 (139)
488 KOG3564 GTPase-activating prot 60.0 76 0.0016 36.2 10.7 81 530-613 29-109 (604)
489 PF07851 TMPIT: TMPIT-like pro 59.8 93 0.002 34.0 11.3 41 524-564 13-53 (330)
490 PF08657 DASH_Spc34: DASH comp 59.7 26 0.00057 37.0 7.0 29 570-598 231-259 (259)
491 KOG4364 Chromatin assembly fac 59.6 3.7E+02 0.0081 32.1 17.1 12 430-441 251-262 (811)
492 PF15294 Leu_zip: Leucine zipp 59.6 2.5E+02 0.0054 30.1 16.3 13 427-439 130-142 (278)
493 COG5325 t-SNARE complex subuni 59.5 2.5E+02 0.0053 30.0 21.3 89 552-641 190-278 (283)
494 TIGR02894 DNA_bind_RsfA transc 59.5 1.8E+02 0.004 28.5 12.2 15 433-447 21-35 (161)
495 PRK10698 phage shock protein P 59.4 2.2E+02 0.0047 29.3 19.8 177 419-606 24-222 (222)
496 PF12711 Kinesin-relat_1: Kine 59.4 44 0.00096 29.4 7.1 79 521-601 2-86 (86)
497 PF12329 TMF_DNA_bd: TATA elem 59.2 1.1E+02 0.0024 25.9 10.2 73 533-605 2-74 (74)
498 PF06048 DUF927: Domain of unk 59.1 8.6 0.00019 40.9 3.4 34 126-160 177-210 (286)
499 COG3096 MukB Uncharacterized p 59.0 4E+02 0.0088 32.3 17.8 139 454-615 272-415 (1480)
500 PF08172 CASP_C: CASP C termin 58.8 64 0.0014 33.9 9.6 76 524-599 1-135 (248)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-94 Score=828.72 Aligned_cols=367 Identities=35% Similarity=0.525 Sum_probs=324.4
Q ss_pred CCCCCCCCCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC--C-CCCcceeeccccCCCCChHHHHHHhhH
Q 005753 56 PKDYAGVPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN--N-WDAETYEFDEVLTEFASQKRVYQAVAK 132 (679)
Q Consensus 56 ~~~~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~--~-~~~~~F~FD~VF~~~asQ~~Vy~~~~~ 132 (679)
.+++.....||+|+|||||++.+|..... ..+|..++..+.+.++.+ + .-.++|+||+||+|.+.|++||+.++.
T Consensus 41 ~k~~~e~~~NIqVivRcRp~n~~E~~~~s--~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~ 118 (1041)
T KOG0243|consen 41 SKDHKEKEVNIQVIVRCRPRNDRERKSKS--SVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVS 118 (1041)
T ss_pred cCCCCCCCCceEEEEEeCCCCchhhhcCC--CeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHH
Confidence 45555555799999999999999976543 334555544444655544 2 246789999999999999999999999
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccccC----CCCCCCCCcchHHHHHHHHHhccccC--CCeEEEEEEEeecceeee
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTLGP----LGEEDPATRGIMVRAMEDILAGVSLD--TDSVTVSYLQLYMETIQD 206 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm~G----~g~~~~~~~GIipra~~~LF~~i~~~--~~~V~vS~lEIYnE~v~D 206 (679)
|+|+.|+.|||||||||||||+||||||.| .+.+.+...||||||+.+||..+... .++|+|||+|+|||.|+|
T Consensus 119 p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~D 198 (1041)
T KOG0243|consen 119 PIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTD 198 (1041)
T ss_pred HHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHH
Confidence 999999999999999999999999999977 23456778999999999999998765 579999999999999999
Q ss_pred cCCCCCC---cceeeecC----CCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEee
Q 005753 207 LLDPTND---NISIAEDP----KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSV 279 (679)
Q Consensus 207 LL~~~~~---~l~i~ed~----~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~ 279 (679)
||++... .+.+.+++ .+|+|+|+||.++.|+++.|++.+|.+|.+.|++|+|.||..|||||+||+|+|+...
T Consensus 199 LLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike 278 (1041)
T KOG0243|consen 199 LLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKE 278 (1041)
T ss_pred hcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEec
Confidence 9998643 46666666 6788999999999999999999999999999999999999999999999999997653
Q ss_pred cccccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCcc
Q 005753 280 EGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVP 359 (679)
Q Consensus 280 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VP 359 (679)
.... ....++.|||+||||||||.+.++|+.+.|.+|++.||+||++||+||+||++++.|||
T Consensus 279 ~t~~-----------------geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIP 341 (1041)
T KOG0243|consen 279 NTPE-----------------GEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIP 341 (1041)
T ss_pred CCCc-----------------chhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCC
Confidence 2211 11467889999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 005753 360 VRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLIAEHE 439 (679)
Q Consensus 360 yRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l~~e~~~L~~e~e 439 (679)
||+|||||||||||||.++|+|||||||+..+++||++||.||.|||+|+|+|.+|.-...+.+++.|-.|+++|+.++.
T Consensus 342 YRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 342 YRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLA 421 (1041)
T ss_pred chHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred HH
Q 005753 440 RQ 441 (679)
Q Consensus 440 ~~ 441 (679)
-.
T Consensus 422 Aa 423 (1041)
T KOG0243|consen 422 AA 423 (1041)
T ss_pred Hh
Confidence 43
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-93 Score=800.96 Aligned_cols=356 Identities=33% Similarity=0.549 Sum_probs=319.0
Q ss_pred CCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCC-------CCChHHHHHHhhHHHHH
Q 005753 64 GRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTE-------FASQKRVYQAVAKPVVE 136 (679)
Q Consensus 64 ~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~-------~asQ~~Vy~~~~~plV~ 136 (679)
..|+|+|||||+|++|...++ .++|.+.....++..+.++.+...|+||+.|+. +++|+.||+.++.|+++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~--k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDA--KCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred CceEEEEEeccchhhhhhccc--ceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 479999999999999987753 344555555666666665666667999999965 57899999999999999
Q ss_pred HHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-----CCeEEEEEEEeecceeeecCC-C
Q 005753 137 SVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-----TDSVTVSYLQLYMETIQDLLD-P 210 (679)
Q Consensus 137 ~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-----~~~V~vS~lEIYnE~v~DLL~-~ 210 (679)
++|+|||+||||||||||||||||+|. .++.++|||||+|++||.++... .++|.|||+|||||+|+|||+ |
T Consensus 82 ~AfEGYN~ClFAYGQTGSGKSYTMMG~--~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 82 HAFEGYNVCLFAYGQTGSGKSYTMMGF--QEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHhcccceEEEEeccCCCCcceeeecc--CCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 999999999999999999999999874 46778999999999999999764 458999999999999999998 5
Q ss_pred -CCCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCC
Q 005753 211 -TNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGE 289 (679)
Q Consensus 211 -~~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~ 289 (679)
.+.+++++|+|..| +||.+|+.+.|+|+.|+..+|..|++.|++|+|+||++|||||+||+|.+.+.....+...
T Consensus 160 ~~kg~LRVREHP~lG-PYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l--- 235 (1221)
T KOG0245|consen 160 KSKGGLRVREHPILG-PYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGL--- 235 (1221)
T ss_pred CCCCCceeeccCccC-hhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCC---
Confidence 45689999999999 7899999999999999999999999999999999999999999999999998765432211
Q ss_pred CCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC-------CCccccC
Q 005753 290 NGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS-------AYVPVRD 362 (679)
Q Consensus 290 ~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~-------~~VPyRd 362 (679)
...+.|||+|||||||||++.+|+.|+|+|||.+||+||++||+||+||++.+ .+|||||
T Consensus 236 -------------~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRD 302 (1221)
T KOG0245|consen 236 -------------DSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRD 302 (1221)
T ss_pred -------------cceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchH
Confidence 24578999999999999999999999999999999999999999999999743 4999999
Q ss_pred cccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 005753 363 SKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLIAEHERQ 441 (679)
Q Consensus 363 SKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l~~e~~~L~~e~e~~ 441 (679)
|.|||||+++|||||||+|||+|||++.||+|||+|||||.|||.|+|+++||++++.+ |+|.|+.|+.+|+.-+..+
T Consensus 303 SVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~ 380 (1221)
T KOG0245|consen 303 SVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQ 380 (1221)
T ss_pred HHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999865 7899999999998876543
No 3
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=7.3e-90 Score=744.20 Aligned_cols=356 Identities=42% Similarity=0.639 Sum_probs=329.1
Q ss_pred CCCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcC
Q 005753 62 VPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDG 141 (679)
Q Consensus 62 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G 141 (679)
.+++|+|+||+||++..|...+..+.+|.. +...++.+..+.|. ++|.||+||+|+++|++||+.++.|+|++|+.|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~--~~~~~v~~~~~~~~-~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFE--NGENTVVLETTKET-KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCC--CCcceEEEeccccc-ccceeeeecCCCccHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999888776666543 33667777777787 999999999999999999999999999999999
Q ss_pred cceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCCCCCCccee
Q 005753 142 YNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLDPTNDNISI 217 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~~~~~~l~i 217 (679)
||+||||||||||||||||.|.+. |+...|||||++++||.+|... .+.|+|||||||+|+|+|||+|.+.++.+
T Consensus 82 YNGTvfaYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsv 160 (607)
T KOG0240|consen 82 YNGTVFAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSV 160 (607)
T ss_pred cceeEEEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCcee
Confidence 999999999999999999998765 6777899999999999999764 45799999999999999999999999999
Q ss_pred eecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCcccc
Q 005753 218 AEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMV 297 (679)
Q Consensus 218 ~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~ 297 (679)
.+| +++.++|+|+++..|.++++++..++.|..+|+++.|+||.+|||||+||+|+|++.....
T Consensus 161 heD-K~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~--------------- 224 (607)
T KOG0240|consen 161 HED-KNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED--------------- 224 (607)
T ss_pred ecc-cCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc---------------
Confidence 999 6777999999999999999999999999999999999999999999999999999875432
Q ss_pred ccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccC-CCCccccCcccccccccccCCC
Q 005753 298 KTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEG-SAYVPVRDSKLTRLLRDSFGGT 376 (679)
Q Consensus 298 ~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~-~~~VPyRdSKLTrLLqdsLgGn 376 (679)
...+.|||.||||||||+++++|++|.-+.|+++||+||+|||+||+||+++ ..||||||||||||||||||||
T Consensus 225 -----~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGN 299 (607)
T KOG0240|consen 225 -----KRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGN 299 (607)
T ss_pred -----hhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCC
Confidence 3467899999999999999999999999999999999999999999999998 7899999999999999999999
Q ss_pred CceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 377 ARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLIAEHERQQ 442 (679)
Q Consensus 377 skt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l~~e~~~L~~e~e~~~ 442 (679)
|||.+|+|++|+..+..||.+||+|++||+.|+|.+.+|.+.+.....++|+.+.+.+.+..+...
T Consensus 300 sRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~ 365 (607)
T KOG0240|consen 300 SRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELE 365 (607)
T ss_pred cceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888766655433
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-91 Score=777.61 Aligned_cols=354 Identities=41% Similarity=0.628 Sum_probs=319.9
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCC----CCCcceeeccccCCCCChHHHHHHhhHHHHHHH
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNN----WDAETYEFDEVLTEFASQKRVYQAVAKPVVESV 138 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~ 138 (679)
..+|+|+||+||++..+.... ...++.+++...++.+.++. ..+++|+||+||+++++|++||+.++.|+|++|
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSEL--LKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESV 81 (574)
T ss_pred ccceeEEEeecCCCchhhhhh--hccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHH
Confidence 468999999999999775443 35677777777776665432 346789999999999999999999999999999
Q ss_pred hcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccCC----CeEEEEEEEeecceeeecCCCCC-C
Q 005753 139 LDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLDT----DSVTVSYLQLYMETIQDLLDPTN-D 213 (679)
Q Consensus 139 l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~~----~~V~vS~lEIYnE~v~DLL~~~~-~ 213 (679)
++|||+||||||||||||||||.|. ++..+|||||+|.+||..|+... +.|+|||+|||||.|+|||++.+ .
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~---~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~ 158 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGP---DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPK 158 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCC---ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcC
Confidence 9999999999999999999999875 47889999999999999998753 68999999999999999999987 5
Q ss_pred cceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCC
Q 005753 214 NISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNN 293 (679)
Q Consensus 214 ~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~ 293 (679)
.+.++++|+.| |||+||+++.|.|+++++.+|..|..+|.+++|.||..|||||+||+|+|++...+.+.
T Consensus 159 ~l~lre~p~~G-v~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~--------- 228 (574)
T KOG4280|consen 159 GLELREDPKCG-VYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGG--------- 228 (574)
T ss_pred CceeeEcCCCc-eEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCC---------
Confidence 89999999877 99999999999999999999999999999999999999999999999999983221100
Q ss_pred ccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCC-CccccCcccccccccc
Q 005753 294 SHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSA-YVPVRDSKLTRLLRDS 372 (679)
Q Consensus 294 s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~-~VPyRdSKLTrLLqds 372 (679)
....+.|||+|||||||||..++|++|+|++||.+||+||++||+||++|+++.. ||||||||||+|||||
T Consensus 229 --------~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdS 300 (574)
T KOG4280|consen 229 --------LMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDS 300 (574)
T ss_pred --------ccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHH
Confidence 0245789999999999999999999999999999999999999999999999887 9999999999999999
Q ss_pred cCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 005753 373 FGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLIAEHER 440 (679)
Q Consensus 373 LgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l~~e~~~L~~e~e~ 440 (679)
|||||+|+|||||+|+..+++||++||+||+||+.|+|+|.+|++++ .++.+.|+.++..|+.++..
T Consensus 301 LGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~ 367 (574)
T KOG4280|consen 301 LGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDP 367 (574)
T ss_pred cCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999887 46778899999999888764
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.3e-84 Score=750.09 Aligned_cols=347 Identities=35% Similarity=0.547 Sum_probs=298.0
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCc
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGY 142 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~ 142 (679)
.++|+|+|||||++..|. + ..++.... ...+.+ ..+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 97 ds~VkV~VRVRPl~~~E~--g---~~iV~~~s-~dsl~I-----~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGy 165 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--G---EMIVQKMS-NDSLTI-----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--C---CeeEEEcC-CCeEEE-----eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 579999999999998752 1 12222222 223333 246899999999999999999999999999999999
Q ss_pred ceEEEeeccCCCCccccccCCCCC------CCCCcchHHHHHHHHHhccccC---------CCeEEEEEEEeecceeeec
Q 005753 143 NGTVMAYGQTGTGKTYTLGPLGEE------DPATRGIMVRAMEDILAGVSLD---------TDSVTVSYLQLYMETIQDL 207 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm~G~g~~------~~~~~GIipra~~~LF~~i~~~---------~~~V~vS~lEIYnE~v~DL 207 (679)
|+||||||||||||||||+|...+ ....+|||||++++||..+... .+.|+|||+|||||+|+||
T Consensus 166 NaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DL 245 (1320)
T PLN03188 166 NSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDL 245 (1320)
T ss_pred cceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceec
Confidence 999999999999999999885321 2456899999999999987532 3579999999999999999
Q ss_pred CCCCCCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccC
Q 005753 208 LDPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHS 287 (679)
Q Consensus 208 L~~~~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~ 287 (679)
|++...++.|++|+..| ++|.||+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+......
T Consensus 246 Lsp~~k~L~IRED~kgG-v~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~---- 320 (1320)
T PLN03188 246 LDPSQKNLQIREDVKSG-VYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVA---- 320 (1320)
T ss_pred cccccCCceEEEcCCCC-eEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccC----
Confidence 99998899999998755 8999999999999999999999999999999999999999999999999986532210
Q ss_pred CCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhcc-----CCCCccccC
Q 005753 288 GENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAE-----GSAYVPVRD 362 (679)
Q Consensus 288 ~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~-----~~~~VPyRd 362 (679)
.+ ....+.|+|+|||||||||.+++++.|.+++|+.+||+||++||+||++|++ +..||||||
T Consensus 321 --dg----------~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRD 388 (1320)
T PLN03188 321 --DG----------LSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRD 388 (1320)
T ss_pred --CC----------CcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCc
Confidence 00 0235689999999999999999999999999999999999999999999986 347999999
Q ss_pred cccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCH-----HHHHHHHHHHHHHHHHH
Q 005753 363 SKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDY-----KSLARRLDIQLDKLIAE 437 (679)
Q Consensus 363 SKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~-----~~l~~~l~~e~~~L~~e 437 (679)
||||+||||+|||||+|+|||||||+..+++||++||+||+||++|+|.|.+|+.... ..++++|+.|+..|+..
T Consensus 389 SKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 389 SRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred chHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999987532 23555666666665543
No 6
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-82 Score=727.22 Aligned_cols=357 Identities=40% Similarity=0.594 Sum_probs=309.9
Q ss_pred CCCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCC---CcceeeccccCCCCChHHHHHHhhHHHHHHH
Q 005753 62 VPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWD---AETYEFDEVLTEFASQKRVYQAVAKPVVESV 138 (679)
Q Consensus 62 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~ 138 (679)
...+|.|+|||||++..+...+. ...+.................+ +..|.||+||+++++|++||+..++|+|+++
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGD-RSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSV 82 (675)
T ss_pred ccceeEEEEEeCCCCccccccCC-ccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHH
Confidence 34689999999999998532221 1111222221111111111111 4789999999999999999999999999999
Q ss_pred hcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccCC---CeEEEEEEEeecceeeecCCCCCCcc
Q 005753 139 LDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLDT---DSVTVSYLQLYMETIQDLLDPTNDNI 215 (679)
Q Consensus 139 l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~~---~~V~vS~lEIYnE~v~DLL~~~~~~l 215 (679)
++|||+||||||||||||||||.|. ..+|||||+++.|||+.|.... +.|.|||+|||||.|+|||+|...++
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~----~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L 158 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGS----EDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDL 158 (675)
T ss_pred hcCcccceeeecCCCCCCceEEecc----CCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCc
Confidence 9999999999999999999999763 3458999999999999998754 68999999999999999999999999
Q ss_pred eeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCcc
Q 005753 216 SIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSH 295 (679)
Q Consensus 216 ~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~ 295 (679)
.++||+..| ++|+||++..|.|.++++++|..|+++|+++.|.+|..|||||+||+|.|.+......
T Consensus 159 ~irED~~~g-i~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~------------ 225 (675)
T KOG0242|consen 159 RLREDSEGG-IVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS------------ 225 (675)
T ss_pred eEeEcCCCC-EEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc------------
Confidence 999998765 8999999999999999999999999999999999999999999999999987643210
Q ss_pred ccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccC--CCCccccCccccccccccc
Q 005753 296 MVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEG--SAYVPVRDSKLTRLLRDSF 373 (679)
Q Consensus 296 ~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~--~~~VPyRdSKLTrLLqdsL 373 (679)
. +.++|+|||||||||+.++++.|.|++||.+||+||++||+||++|+++ ..||||||||||||||++|
T Consensus 226 --------~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sL 296 (675)
T KOG0242|consen 226 --------S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSL 296 (675)
T ss_pred --------c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhc
Confidence 1 4688999999999999999999999999999999999999999999987 4699999999999999999
Q ss_pred CCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 374 GGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLIAEHERQQKAF 445 (679)
Q Consensus 374 gGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l~~e~~~L~~e~e~~~~~~ 445 (679)
||||+|+|||||+|+..|++||.+||+||+||++|++.+.+|.....+.+...++.++.+|.++++......
T Consensus 297 gGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 297 GGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKL 368 (675)
T ss_pred CCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999998888888888888888888877644433
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=6.1e-82 Score=679.38 Aligned_cols=321 Identities=39% Similarity=0.578 Sum_probs=283.9
Q ss_pred CCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcc
Q 005753 64 GRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYN 143 (679)
Q Consensus 64 ~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N 143 (679)
.+|+|+|||||++..|... ....|+...+....+.. .. ..+.|.||+||+++++|++||+.++.|+|+++++|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~--~~~~~v~~~~~~~~~~~-~~--~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n 75 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADG--GQGQCLKKLSSDTLVWH-SH--PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYN 75 (337)
T ss_pred CCeEEEEEcCcCChhhccc--CCCeEEEEcCCCcEEee-CC--CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 3799999999999988632 33567766543333222 22 2679999999999999999999999999999999999
Q ss_pred eEEEeeccCCCCccccccCCCCC----CCCCcchHHHHHHHHHhccccC--------CCeEEEEEEEeecceeeecCCCC
Q 005753 144 GTVMAYGQTGTGKTYTLGPLGEE----DPATRGIMVRAMEDILAGVSLD--------TDSVTVSYLQLYMETIQDLLDPT 211 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm~G~g~~----~~~~~GIipra~~~LF~~i~~~--------~~~V~vS~lEIYnE~v~DLL~~~ 211 (679)
+||||||||||||||||+|.... ....+|||||++++||..+... .+.|++||+|||||+|+|||++.
T Consensus 76 ~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~ 155 (337)
T cd01373 76 GSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT 155 (337)
T ss_pred eeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC
Confidence 99999999999999999885432 2356899999999999887542 34799999999999999999998
Q ss_pred CCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCC
Q 005753 212 NDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENG 291 (679)
Q Consensus 212 ~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~ 291 (679)
...+.+++++..| ++++|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+......
T Consensus 156 ~~~l~i~e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~-------- 226 (337)
T cd01373 156 SRNLKIREDIKKG-VYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS-------- 226 (337)
T ss_pred CCCceEEECCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC--------
Confidence 8899999998765 8999999999999999999999999999999999999999999999999986543211
Q ss_pred CCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhcc----CCCCccccCccccc
Q 005753 292 NNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAE----GSAYVPVRDSKLTR 367 (679)
Q Consensus 292 ~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~----~~~~VPyRdSKLTr 367 (679)
....+.|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..||||||||||+
T Consensus 227 ----------~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~ 296 (337)
T cd01373 227 ----------STNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTF 296 (337)
T ss_pred ----------CCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHH
Confidence 0235679999999999999999999999999999999999999999999985 35899999999999
Q ss_pred ccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 368 LLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 368 LLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
||||+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 297 lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 297 LLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999987
No 8
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-82 Score=703.59 Aligned_cols=385 Identities=32% Similarity=0.526 Sum_probs=330.7
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC------CCCCcceeeccccCC-------CCChHHHHHH
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN------NWDAETYEFDEVLTE-------FASQKRVYQA 129 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~F~FD~VF~~-------~asQ~~Vy~~ 129 (679)
..+|||+|||||++.+|+.... .+.|.++.....+..... ...+++|.||++|++ .+.|+.||+.
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~t--k~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~ 80 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELST--KCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKC 80 (1714)
T ss_pred CcceEEEEEecccchhhhcccc--cceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHh
Confidence 3689999999999999986653 455666666555554322 245789999999966 4789999999
Q ss_pred hhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-----CCeEEEEEEEeeccee
Q 005753 130 VAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-----TDSVTVSYLQLYMETI 204 (679)
Q Consensus 130 ~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-----~~~V~vS~lEIYnE~v 204 (679)
++..+|+++|+|||+||||||||||||||||+|.. ..+|||||.+..||..|... ++.|.|||+|||||++
T Consensus 81 lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~----~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv 156 (1714)
T KOG0241|consen 81 LGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTA----EQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKV 156 (1714)
T ss_pred cchHHHHHHhhccceeeEEecccCCCceeEeeccC----CCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcch
Confidence 99999999999999999999999999999998754 35799999999999999754 4579999999999999
Q ss_pred eecCCCCC--CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeeccc
Q 005753 205 QDLLDPTN--DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGR 282 (679)
Q Consensus 205 ~DLL~~~~--~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~ 282 (679)
||||+|.. ..++++++...| .||.||++..|.|++|+-.+|..|+++|++++|+||..|||||+||.|.|.+.-.+.
T Consensus 157 ~DLLdPk~ssqtlkVrehsvlG-p~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ 235 (1714)
T KOG0241|consen 157 RDLLDPKGSSQTLKVREHSVLG-PYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDL 235 (1714)
T ss_pred hhhhCCCCCcceeEEeeccccc-ccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecc
Confidence 99999864 568999999988 789999999999999999999999999999999999999999999999999887655
Q ss_pred ccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccC------CC
Q 005753 283 DVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEG------SA 356 (679)
Q Consensus 283 ~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~------~~ 356 (679)
...++++ ..|||.+||||||||..++|+.|.|++||.+||+||++||.||++|+++ .+
T Consensus 236 ktg~Sge----------------KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdK 299 (1714)
T KOG0241|consen 236 KTGHSGE----------------KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDK 299 (1714)
T ss_pred ccCcchh----------------heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccc
Confidence 4444333 5789999999999999999999999999999999999999999999974 36
Q ss_pred CccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHH
Q 005753 357 YVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLIA 436 (679)
Q Consensus 357 ~VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l~~e~~~L~~ 436 (679)
+||||||.|||||+|+|||||+|+||+||||++++|+|||+|||||.|||+|+|.+.||++.++. .++.++.|+++|+.
T Consensus 300 fvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar-virElReEve~lr~ 378 (1714)
T KOG0241|consen 300 FVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR-VIRELREEVEKLRE 378 (1714)
T ss_pred cccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998864 67999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 437 EHERQQKAFENEIERITIEAQNQISETERNYADAL 471 (679)
Q Consensus 437 e~e~~~~~~~~e~~~~~~e~~~~l~e~e~~~~~~l 471 (679)
.++..-..--.++++...+..+-|.++...|++.|
T Consensus 379 qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl 413 (1714)
T KOG0241|consen 379 QLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKL 413 (1714)
T ss_pred HHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 87763222223333334444555555555555443
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=8.3e-81 Score=670.86 Aligned_cols=320 Identities=38% Similarity=0.604 Sum_probs=285.1
Q ss_pred CeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC-----------CCCCcceeeccccCCCCChHHHHHHhhHH
Q 005753 65 RVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN-----------NWDAETYEFDEVLTEFASQKRVYQAVAKP 133 (679)
Q Consensus 65 ~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~-----------~~~~~~F~FD~VF~~~asQ~~Vy~~~~~p 133 (679)
+|+|+|||||+++.|...+ ...|+.+.+....+..+.. ....+.|.||+||+++++|++||+.+++|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEG--TRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcC--CceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 5999999999999985443 3567766554322221111 23467899999999999999999999999
Q ss_pred HHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCC
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLD 209 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~ 209 (679)
+|+++++|||+||||||||||||||||+|.. .++|||||++++||+.+... .+.|++||+|||||+|+|||+
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 154 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGTD----SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLS 154 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCCC----CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCC
Confidence 9999999999999999999999999997743 45899999999999988754 357999999999999999999
Q ss_pred CCCCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCC
Q 005753 210 PTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGE 289 (679)
Q Consensus 210 ~~~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~ 289 (679)
+....+.+++|+. |.+++.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.....+.
T Consensus 155 ~~~~~l~i~ed~~-~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~----- 228 (338)
T cd01370 155 PSSGPLELREDPN-QGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASI----- 228 (338)
T ss_pred CCCCCceEEEcCC-CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCC-----
Confidence 9888999999986 5599999999999999999999999999999999999999999999999999876543110
Q ss_pred CCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC---CCccccCcccc
Q 005753 290 NGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS---AYVPVRDSKLT 366 (679)
Q Consensus 290 ~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~---~~VPyRdSKLT 366 (679)
......|+|+|||||||||.++++..|.+++|+.+||+||++|++||.+|+.+. .||||||||||
T Consensus 229 ------------~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT 296 (338)
T cd01370 229 ------------NQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLT 296 (338)
T ss_pred ------------CCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHH
Confidence 134578999999999999999999999999999999999999999999999987 89999999999
Q ss_pred cccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 367 RLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 367 rLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 297 ~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 297 RLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999986
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=9.6e-79 Score=656.35 Aligned_cols=320 Identities=32% Similarity=0.535 Sum_probs=281.3
Q ss_pred CeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC------------CCCCcceeeccccCCCCChHHHHHHhhH
Q 005753 65 RVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN------------NWDAETYEFDEVLTEFASQKRVYQAVAK 132 (679)
Q Consensus 65 ~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~------------~~~~~~F~FD~VF~~~asQ~~Vy~~~~~ 132 (679)
+|+|+|||||++..|...+ ...|+.+.+. ..+.+..+ ....+.|.||+||+++++|++||+.++.
T Consensus 2 ~i~V~vRvRP~~~~E~~~~--~~~~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~ 78 (345)
T cd01368 2 PVKVYLRVRPLSKDELESE--DEGCIEVINS-TTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTAL 78 (345)
T ss_pred CEEEEEEeCcCCchhhccC--CCceEEEcCC-CEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHH
Confidence 7999999999999986433 3566665443 23333221 2356789999999999999999999999
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccCCCeEEEEEEEeecceeeecCCCCC
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLDTDSVTVSYLQLYMETIQDLLDPTN 212 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~~~~V~vS~lEIYnE~v~DLL~~~~ 212 (679)
|+|+++++|||+||||||||||||||||+|.. .++|||||++++||+.+.. +.|.+||+|||||+|+|||++..
T Consensus 79 p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~----~~~Gli~r~~~~lF~~~~~--~~v~~S~~EIyne~v~DLL~~~~ 152 (345)
T cd01368 79 PLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP----GDGGILPRSLDVIFNSIGG--YSVFVSYVEIYNNYIYDLLEDSP 152 (345)
T ss_pred HHHHHHhCCCceEEEEeCCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHHh--eeEEEEEEEEeCCEeEeCCCCcc
Confidence 99999999999999999999999999997743 5689999999999998876 89999999999999999998765
Q ss_pred C------cceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeeccccccc
Q 005753 213 D------NISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAH 286 (679)
Q Consensus 213 ~------~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~ 286 (679)
. .+.+++|+. |.++++|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|++.+........
T Consensus 153 ~~~~~~~~l~i~ed~~-~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~- 230 (345)
T cd01368 153 SSTKKRQSLRLREDHN-GNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGD- 230 (345)
T ss_pred ccccCCCceEEEECCC-CCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccc-
Confidence 3 689999976 66999999999999999999999999999999999999999999999999998764332110
Q ss_pred CCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhcc------CCCCccc
Q 005753 287 SGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAE------GSAYVPV 360 (679)
Q Consensus 287 ~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~------~~~~VPy 360 (679)
. ...+.....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..||||
T Consensus 231 ~-----------~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPy 299 (345)
T cd01368 231 V-----------DQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPY 299 (345)
T ss_pred c-----------ccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCC
Confidence 0 0112356789999999999999999999999999999999999999999999987 4689999
Q ss_pred cCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhh
Q 005753 361 RDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAM 406 (679)
Q Consensus 361 RdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak 406 (679)
||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 300 R~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 300 RDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred cCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3e-78 Score=655.50 Aligned_cols=329 Identities=33% Similarity=0.561 Sum_probs=292.6
Q ss_pred CCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC----CCCCcceeeccccCCC-------CChHHHHHHhhH
Q 005753 64 GRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN----NWDAETYEFDEVLTEF-------ASQKRVYQAVAK 132 (679)
Q Consensus 64 ~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~F~FD~VF~~~-------asQ~~Vy~~~~~ 132 (679)
++|+|+||+||++..|...++ ..++.+.+....+..+.. ....+.|.||+||+++ ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~--~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGS--KCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCC--ceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 489999999999999876554 567777774433333332 3457899999999998 999999999999
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-----CCeEEEEEEEeecceeeec
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-----TDSVTVSYLQLYMETIQDL 207 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-----~~~V~vS~lEIYnE~v~DL 207 (679)
|+|+++++|||+||||||||||||||||+|.. ..+|||||++++||+.+... .+.|++||+|||||+|+||
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~----~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DL 154 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYK----EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDL 154 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeC
Confidence 99999999999999999999999999998743 35799999999999988654 3479999999999999999
Q ss_pred CCCCC---CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeeccccc
Q 005753 208 LDPTN---DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDV 284 (679)
Q Consensus 208 L~~~~---~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~ 284 (679)
|++.. ..+.+++++..| ++++|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...+...
T Consensus 155 L~~~~~~~~~l~i~~~~~~g-~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~ 233 (356)
T cd01365 155 LNPKKKNKGNLKVREHPVLG-PYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKET 233 (356)
T ss_pred CCCCccCCcCceEEECCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCC
Confidence 99874 678999998755 89999999999999999999999999999999999999999999999999876543210
Q ss_pred ccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccC--------CC
Q 005753 285 AHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEG--------SA 356 (679)
Q Consensus 285 ~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~--------~~ 356 (679)
.......|+|+|||||||||.++++..|.+++|+.+||+||++|++||.+|+.+ +.
T Consensus 234 ----------------~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~ 297 (356)
T cd01365 234 ----------------DLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSS 297 (356)
T ss_pred ----------------CCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCC
Confidence 013457899999999999999999999999999999999999999999999864 48
Q ss_pred CccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccc
Q 005753 357 YVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLK 415 (679)
Q Consensus 357 ~VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~ 415 (679)
||||||||||+||+|+||||++|+||+||+|+..+++||++||+||+||++|+|.|++|
T Consensus 298 ~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 298 FIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999875
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1e-77 Score=650.57 Aligned_cols=334 Identities=38% Similarity=0.558 Sum_probs=297.7
Q ss_pred CCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCC---CCCcceeeccccCCCCChHHHHHHhhHHHHHHHhc
Q 005753 64 GRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNN---WDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLD 140 (679)
Q Consensus 64 ~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~ 140 (679)
.+|+|+|||||+...|...+ ...++.+....+.+.+.... ...+.|.||+||+++++|++||+.++.|+|+++++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~--~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~ 79 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEK--SSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLM 79 (352)
T ss_pred CCEEEEEEcCcCCccccccC--CCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 58999999999999885443 24567776666666665542 35679999999999999999999999999999999
Q ss_pred CcceEEEeeccCCCCccccccCCCCC-------CCCCcchHHHHHHHHHhccccC--CCeEEEEEEEeecceeeecCCCC
Q 005753 141 GYNGTVMAYGQTGTGKTYTLGPLGEE-------DPATRGIMVRAMEDILAGVSLD--TDSVTVSYLQLYMETIQDLLDPT 211 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm~G~g~~-------~~~~~GIipra~~~LF~~i~~~--~~~V~vS~lEIYnE~v~DLL~~~ 211 (679)
|||+||||||||||||||||+|.... .+..+|||||++++||+.+... .++|++||+|||||+|+|||++.
T Consensus 80 G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 159 (352)
T cd01364 80 GYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSE 159 (352)
T ss_pred CCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCc
Confidence 99999999999999999999874322 2456899999999999988763 45899999999999999999986
Q ss_pred ---CCcceeeecC-CCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccC
Q 005753 212 ---NDNISIAEDP-KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHS 287 (679)
Q Consensus 212 ---~~~l~i~ed~-~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~ 287 (679)
..++.+++++ ..|.++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+......
T Consensus 160 ~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~---- 235 (352)
T cd01364 160 SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTIS---- 235 (352)
T ss_pred cccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCC----
Confidence 5679999995 44569999999999999999999999999999999999999999999999999987543211
Q ss_pred CCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccccc
Q 005753 288 GENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTR 367 (679)
Q Consensus 288 ~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTr 367 (679)
.......|+|+|||||||||.++.++.+.+++|+..||+||++|++||.+|+.++.|||||+||||+
T Consensus 236 -------------~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~ 302 (352)
T cd01364 236 -------------GEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTR 302 (352)
T ss_pred -------------CCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHH
Confidence 0134567999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccccccccc
Q 005753 368 LLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKE 416 (679)
Q Consensus 368 LLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~ 416 (679)
||+|+|||||+|+||+||||+..+++||++||+||+||++|+|.|.+|.
T Consensus 303 lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 303 LLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999999999999999999999999999999999999999885
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=6.6e-77 Score=639.56 Aligned_cols=324 Identities=38% Similarity=0.624 Sum_probs=292.3
Q ss_pred CCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCC----CCCcceeeccccCCCCChHHHHHHhhHHHHHHHh
Q 005753 64 GRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNN----WDAETYEFDEVLTEFASQKRVYQAVAKPVVESVL 139 (679)
Q Consensus 64 ~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l 139 (679)
.+|+|+|||||++..|...+ ...++.+++....+.+..+. ...+.|.||+||+++++|++||+.++.|+|++++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~ 78 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEG--APEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVL 78 (333)
T ss_pred CCeEEEEEcCcCChhhhhcC--CCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHh
Confidence 47999999999999886543 35678888887777776543 4578899999999999999999999999999999
Q ss_pred cCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC---CCeEEEEEEEeecceeeecCCCCC-Ccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD---TDSVTVSYLQLYMETIQDLLDPTN-DNI 215 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~---~~~V~vS~lEIYnE~v~DLL~~~~-~~l 215 (679)
+|||+||||||||||||||||+|.. .++..+|||||++++||+.+... .+.|.+||+|||||.|+|||++.. ..+
T Consensus 79 ~G~n~~i~ayG~tgSGKTyTm~G~~-~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l 157 (333)
T cd01371 79 EGYNGTIFAYGQTGTGKTFTMEGVR-EPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKL 157 (333)
T ss_pred CCCceeEEecCCCCCCCcEeecCCC-CcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCce
Confidence 9999999999999999999998853 34567999999999999988654 458999999999999999999876 578
Q ss_pred eeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCcc
Q 005753 216 SIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSH 295 (679)
Q Consensus 216 ~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~ 295 (679)
.+++++..| ++|.|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+......
T Consensus 158 ~i~~~~~~~-~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~------------ 224 (333)
T cd01371 158 ELKERPDRG-VYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGED------------ 224 (333)
T ss_pred eEEEcCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCC------------
Confidence 999998755 8999999999999999999999999999999999999999999999999987654320
Q ss_pred ccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCC-CccccCcccccccccccC
Q 005753 296 MVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSA-YVPVRDSKLTRLLRDSFG 374 (679)
Q Consensus 296 ~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~-~VPyRdSKLTrLLqdsLg 374 (679)
....+..|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+++.. ||||||||||+||+|+||
T Consensus 225 -----~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~ 299 (333)
T cd01371 225 -----GENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLG 299 (333)
T ss_pred -----CCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcC
Confidence 01346789999999999999999999999999999999999999999999999875 999999999999999999
Q ss_pred CCCceeeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 375 GTARTSLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 375 Gnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
|||+|+||+||+|+..+++||++||+||+|||+|
T Consensus 300 g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 300 GNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred CCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999986
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.3e-76 Score=634.52 Aligned_cols=311 Identities=35% Similarity=0.505 Sum_probs=276.8
Q ss_pred CCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC-------C-CCCcceeeccccCCCCChHHHHHHhhHHHH
Q 005753 64 GRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN-------N-WDAETYEFDEVLTEFASQKRVYQAVAKPVV 135 (679)
Q Consensus 64 ~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~-------~-~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV 135 (679)
.+|+|+|||||+++.|...+. .+++.+++. ..+.+... . ...+.|+||+||+++++|++||+.++.|+|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv 77 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGE--TDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLI 77 (322)
T ss_pred CCeEEEEEcCcCChhhhccCC--ceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHH
Confidence 379999999999999864432 345555443 23333311 1 135789999999999999999999999999
Q ss_pred HHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC--CCeEEEEEEEeecceeeecCCCCCC
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD--TDSVTVSYLQLYMETIQDLLDPTND 213 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~--~~~V~vS~lEIYnE~v~DLL~~~~~ 213 (679)
+++++|||+||||||||||||||||+|.. .++|||||++++||+.+... .++|++||+|||||.++|||++ ..
T Consensus 78 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~-~~ 152 (322)
T cd01367 78 PHVFEGGVATCFAYGQTGSGKTYTMLGDE----NQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLND-RK 152 (322)
T ss_pred HHHhCCCceEEEeccCCCCCCceEecCcC----CcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccC-cc
Confidence 99999999999999999999999997743 46899999999999998764 5689999999999999999998 56
Q ss_pred cceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCC
Q 005753 214 NISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNN 293 (679)
Q Consensus 214 ~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~ 293 (679)
.+.+++++. |.+++.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+...
T Consensus 153 ~l~i~~~~~-~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------------- 218 (322)
T cd01367 153 RLSVLEDGK-GNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------------- 218 (322)
T ss_pred ceeEEEcCC-CCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-------------
Confidence 799999976 559999999999999999999999999999999999999999999999999987532
Q ss_pred ccccccCCCCeEEeeeEEEEecCCCccccCCC-CCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCcccccccccc
Q 005753 294 SHMVKTLKPPIVRKAKLVVVDLAGSERIDKSG-SEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDS 372 (679)
Q Consensus 294 s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~-~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqds 372 (679)
....|+|+|||||||||...++ ..|.+++|+.+||+||++|++||.+|++++.||||||||||+||+|+
T Consensus 219 ----------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~ 288 (322)
T cd01367 219 ----------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDS 288 (322)
T ss_pred ----------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHh
Confidence 2357999999999999988765 57899999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeEecCCCCCChHHhHHHHHHHHHhh
Q 005753 373 FGGTARTSLVITIGPSPRHRGETASTILFGQRAM 406 (679)
Q Consensus 373 LgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak 406 (679)
|||||+|+||+||||+..+++||++||+||+|+|
T Consensus 289 L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 289 FIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred hCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999986
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.1e-76 Score=630.90 Aligned_cols=311 Identities=36% Similarity=0.546 Sum_probs=280.9
Q ss_pred CeEEEEecCCCCchhhhccCCCCceEEeCCCc----eEEEecc--CCCCCcceeeccccCCCCChHHHHHHhhHHHHHHH
Q 005753 65 RVRVAVRLRTRNAEEMVADADFGDCVELLPEL----KRLKLRK--NNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESV 138 (679)
Q Consensus 65 ~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~----~~~~~~~--~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~ 138 (679)
+|+|+|||||+...|. + ...|+...... ..+.+.. +.+..+.|.||+||+++++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~e~--~--~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 76 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--D--SSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHL 76 (319)
T ss_pred CcEEEEEeCcCCcccc--C--CCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 5899999999998872 2 24566664331 2344433 34567899999999999999999999999999999
Q ss_pred hcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC--CCeEEEEEEEeecceeeecCCCCCCcce
Q 005753 139 LDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD--TDSVTVSYLQLYMETIQDLLDPTNDNIS 216 (679)
Q Consensus 139 l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~--~~~V~vS~lEIYnE~v~DLL~~~~~~l~ 216 (679)
++|||+||||||||||||||||+|.. ..+|||||++++||+.+... .+.|++||+|||||.|+|||++....+.
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~----~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~ 152 (319)
T cd01376 77 LSGQNATVFAYGSTGAGKTHTMLGDP----NEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELP 152 (319)
T ss_pred hCCCceEEEEECCCCCCCcEEEeCCc----CccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCce
Confidence 99999999999999999999997743 36899999999999988665 5689999999999999999999888899
Q ss_pred eeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCccc
Q 005753 217 IAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHM 296 (679)
Q Consensus 217 i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~ 296 (679)
+++++. |.+++.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+...
T Consensus 153 i~~~~~-~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---------------- 215 (319)
T cd01376 153 IREDKD-GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS---------------- 215 (319)
T ss_pred EEEcCC-CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC----------------
Confidence 999975 669999999999999999999999999999999999999999999999999987532
Q ss_pred cccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCcccccccccccCCC
Q 005753 297 VKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGT 376 (679)
Q Consensus 297 ~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgGn 376 (679)
.....|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.+..||||||||||+||+|+||||
T Consensus 216 ------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~ 289 (319)
T cd01376 216 ------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGG 289 (319)
T ss_pred ------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCC
Confidence 12467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeEecCCCCCChHHhHHHHHHHHHhh
Q 005753 377 ARTSLVITIGPSPRHRGETASTILFGQRAM 406 (679)
Q Consensus 377 skt~mI~tIsP~~~~~~ETlsTL~fa~rak 406 (679)
|+|+||+||||+..+++||++||+||+|||
T Consensus 290 s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 290 SRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred ccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999986
No 16
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=5.2e-76 Score=634.65 Aligned_cols=328 Identities=37% Similarity=0.606 Sum_probs=291.0
Q ss_pred CeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcce
Q 005753 65 RVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNG 144 (679)
Q Consensus 65 ~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~ 144 (679)
+|+|+||+||+++.|...+ ...|+.+.|....+.+.. .+.|.||+||+++++|++||+.++.|+|+++++|||+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~--~~~~~~~~~~~~~v~~~~----~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~ 75 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEG--CQVCVSVVPGEPQVTVGT----DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNA 75 (341)
T ss_pred CeEEEEECCCCCchhcccC--CCeEEEEeCCCCEEEecC----CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcc
Confidence 6999999999999886443 356888888776666643 5799999999999999999999999999999999999
Q ss_pred EEEeeccCCCCccccccCCCC--CCCCCcchHHHHHHHHHhccccCC----CeEEEEEEEeecceeeecCCCC---CCcc
Q 005753 145 TVMAYGQTGTGKTYTLGPLGE--EDPATRGIMVRAMEDILAGVSLDT----DSVTVSYLQLYMETIQDLLDPT---NDNI 215 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm~G~g~--~~~~~~GIipra~~~LF~~i~~~~----~~V~vS~lEIYnE~v~DLL~~~---~~~l 215 (679)
||||||||||||||||+|... .....+|||||++++||+.+.... +.|.|||+|||||.|+|||++. ...+
T Consensus 76 ~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l 155 (341)
T cd01372 76 TVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPI 155 (341)
T ss_pred ceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCc
Confidence 999999999999999987532 235678999999999999987543 4899999999999999999987 4689
Q ss_pred eeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCcc
Q 005753 216 SIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSH 295 (679)
Q Consensus 216 ~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~ 295 (679)
.+++++. |.+++.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...+.......
T Consensus 156 ~i~e~~~-~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~------- 227 (341)
T cd01372 156 QIREDSK-GNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMS------- 227 (341)
T ss_pred eEEECCC-CCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccccc-------
Confidence 9999976 55999999999999999999999999999999999999999999999999999876542111000
Q ss_pred ccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC---CCccccCcccccccccc
Q 005753 296 MVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS---AYVPVRDSKLTRLLRDS 372 (679)
Q Consensus 296 ~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~---~~VPyRdSKLTrLLqds 372 (679)
.........|+|+|||||||||.++++..|.+++|+..||+||++|++||.+|+.++ .|||||+||||+||+|+
T Consensus 228 ---~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~ 304 (341)
T cd01372 228 ---GDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDS 304 (341)
T ss_pred ---ccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHh
Confidence 001134678999999999999999999999999999999999999999999999876 79999999999999999
Q ss_pred cCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccc
Q 005753 373 FGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVE 409 (679)
Q Consensus 373 LgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~ 409 (679)
||||++|+||+||||+..+++||++||+||+||++|+
T Consensus 305 Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 305 LGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred cCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999985
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=4.2e-76 Score=631.48 Aligned_cols=319 Identities=43% Similarity=0.683 Sum_probs=288.0
Q ss_pred CCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcc
Q 005753 64 GRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYN 143 (679)
Q Consensus 64 ~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N 143 (679)
.+|+|+|||||++..|... ....|+.+.+. ..+.+... ...+.|.||+||+++++|++||+.++.|+|+++++|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~--~~~~~v~~~~~-~~v~~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n 77 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELR--GSKSIVKFPGE-DTVSIAGS-DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYN 77 (325)
T ss_pred CCeEEEEEcCcCChhhhcc--CCceEEEEcCC-CEEEecCC-CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 4899999999999988433 33567777554 55655543 45679999999999999999999999999999999999
Q ss_pred eEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCCCCCCcceeee
Q 005753 144 GTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLDPTNDNISIAE 219 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~~~~~~l~i~e 219 (679)
+||||||||||||||||+|.. .++..+||+||++++||+.+... .+.|++||+|||||.++|||++....+.+++
T Consensus 78 ~~i~ayG~tgSGKT~Tm~G~~-~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~ 156 (325)
T cd01369 78 GTIFAYGQTGSGKTYTMEGPP-GDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHE 156 (325)
T ss_pred ceEEEeCCCCCCceEEecCCC-CccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEE
Confidence 999999999999999998743 33567899999999999988653 3579999999999999999999988999999
Q ss_pred cCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCcccccc
Q 005753 220 DPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVKT 299 (679)
Q Consensus 220 d~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~~~ 299 (679)
++..| ++++|++++.|.|.+|+..+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 157 ~~~~~-~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~----------------- 218 (325)
T cd01369 157 DKNRG-VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET----------------- 218 (325)
T ss_pred cCCCC-EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC-----------------
Confidence 97655 899999999999999999999999999999999999999999999999998754321
Q ss_pred CCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC-CCccccCcccccccccccCCCCc
Q 005753 300 LKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS-AYVPVRDSKLTRLLRDSFGGTAR 378 (679)
Q Consensus 300 ~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~-~~VPyRdSKLTrLLqdsLgGnsk 378 (679)
.....|+|+|||||||||.++++++|.+++|+..||+||++|++||.+|+++. .||||||||||+||+|+|||+|+
T Consensus 219 ---~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~ 295 (325)
T cd01369 219 ---GSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSR 295 (325)
T ss_pred ---CCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCe
Confidence 23568999999999999999999999999999999999999999999999987 99999999999999999999999
Q ss_pred eeeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 379 TSLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 379 t~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
|+||+||||+..+++||++||+||+|||+|
T Consensus 296 t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 296 TTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred EEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999986
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4e-75 Score=622.87 Aligned_cols=316 Identities=37% Similarity=0.604 Sum_probs=283.8
Q ss_pred CeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcce
Q 005753 65 RVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNG 144 (679)
Q Consensus 65 ~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~ 144 (679)
+|+|+||+||++..|.. ...+++.+.++ ..+.+..+ ...+.|.||+||+++++|++||+.++.|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~---~~~~~~~~~~~-~~v~~~~~-~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESD---NEQVAWSIDND-NTISLEES-TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCccccc---CCcceEEECCC-CEEEEcCC-CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 59999999999998862 12345555554 44544433 457899999999999999999999999999999999999
Q ss_pred EEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC---CCeEEEEEEEeecceeeecCCCCCCcceeeecC
Q 005753 145 TVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD---TDSVTVSYLQLYMETIQDLLDPTNDNISIAEDP 221 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~---~~~V~vS~lEIYnE~v~DLL~~~~~~l~i~ed~ 221 (679)
||||||||||||||||+|.. .++|||||++++||..+... .+.|++||+|||||+|+|||++....+.+++++
T Consensus 76 ~i~ayG~tgSGKT~T~~G~~----~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~ 151 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGDE----QEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDP 151 (321)
T ss_pred eEEeecCCCCCCceeccCCC----CCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECC
Confidence 99999999999999997743 56799999999999988654 347999999999999999999998899999998
Q ss_pred CCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCccccccCC
Q 005753 222 KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVKTLK 301 (679)
Q Consensus 222 ~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~~~~~ 301 (679)
..| +++.|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+...... .
T Consensus 152 ~~~-~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-----------------~ 213 (321)
T cd01374 152 NKG-VVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS-----------------E 213 (321)
T ss_pred CCC-EEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC-----------------C
Confidence 755 8999999999999999999999999999999999999999999999999998654321 0
Q ss_pred CCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC--CCccccCcccccccccccCCCCce
Q 005753 302 PPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS--AYVPVRDSKLTRLLRDSFGGTART 379 (679)
Q Consensus 302 ~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~--~~VPyRdSKLTrLLqdsLgGnskt 379 (679)
......|+|+|||||||||..+.+ .|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+||||++|
T Consensus 214 ~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t 292 (321)
T cd01374 214 SGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNART 292 (321)
T ss_pred CCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceE
Confidence 134678999999999999999998 89999999999999999999999999985 999999999999999999999999
Q ss_pred eeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 380 SLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 380 ~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
+||+||||...+++||++||+||+||++|
T Consensus 293 ~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 293 AIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred EEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=5e-75 Score=625.15 Aligned_cols=314 Identities=42% Similarity=0.651 Sum_probs=277.4
Q ss_pred CeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEec----------cCCCCCcceeeccccCCCCChHHHHHHhhHHH
Q 005753 65 RVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLR----------KNNWDAETYEFDEVLTEFASQKRVYQAVAKPV 134 (679)
Q Consensus 65 ~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~pl 134 (679)
.|+|+||+||+...+ ..++.+.++...+.+. .+....+.|.||+||++ ++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~ 72 (334)
T cd01375 1 TIQVFVRVRPTPTKQ-------GSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPV 72 (334)
T ss_pred CeEEEEECCCCCCCC-------CccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHH
Confidence 489999999998743 2234555554433321 22345678999999999 99999999999999
Q ss_pred HHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC---CCeEEEEEEEeecceeeecCCCC
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD---TDSVTVSYLQLYMETIQDLLDPT 211 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~---~~~V~vS~lEIYnE~v~DLL~~~ 211 (679)
|+++++|||+||||||||||||||||+|... +..++|||||++++||+.+... .+.|++||+|||||+++|||++.
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~ 151 (334)
T cd01375 73 VDSALDGYNGTIFAYGQTGAGKTFTMTGGTE-SYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDT 151 (334)
T ss_pred HHHHhCCCccceeeecCCCCCCeEEccCCCC-cccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCC
Confidence 9999999999999999999999999987432 4457899999999999988654 45899999999999999999987
Q ss_pred C------CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccc
Q 005753 212 N------DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVA 285 (679)
Q Consensus 212 ~------~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~ 285 (679)
. +.+.+++++. |.++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+......
T Consensus 152 ~~~~~~~~~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~-- 228 (334)
T cd01375 152 PEALESLPAVTILEDSE-QNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG-- 228 (334)
T ss_pred ccccccCCceEEEEcCC-CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC--
Confidence 4 5689999986 459999999999999999999999999999999999999999999999999997643211
Q ss_pred cCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC-CCccccCcc
Q 005753 286 HSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS-AYVPVRDSK 364 (679)
Q Consensus 286 ~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~-~~VPyRdSK 364 (679)
......|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|++++ .||||||||
T Consensus 229 ----------------~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSk 292 (334)
T cd01375 229 ----------------SEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSK 292 (334)
T ss_pred ----------------CCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccH
Confidence 134578999999999999999999999999999999999999999999999998 999999999
Q ss_pred cccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhh
Q 005753 365 LTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAM 406 (679)
Q Consensus 365 LTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak 406 (679)
||+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus 293 LT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 293 LTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.7e-73 Score=612.19 Aligned_cols=319 Identities=38% Similarity=0.575 Sum_probs=288.4
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCc-eEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcC
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPEL-KRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDG 141 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G 141 (679)
+|+|+|+||+||+...|. .....++.+.+.. ..+.+.......+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES---TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCcccc---CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHH-HHHHHHHhCC
Confidence 478999999999998875 2224566666653 6777765545678999999999999999999985 8999999999
Q ss_pred cceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-----CCeEEEEEEEeecceeeecCCCC---CC
Q 005753 142 YNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-----TDSVTVSYLQLYMETIQDLLDPT---ND 213 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-----~~~V~vS~lEIYnE~v~DLL~~~---~~ 213 (679)
+|+||||||+|||||||||+|.. ..+||+||++++||+.+... .+.|.+||+|||||+++|||++. ..
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~----~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~ 152 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPP----ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKK 152 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCC----CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCC
Confidence 99999999999999999997743 56799999999999987654 34799999999999999999987 67
Q ss_pred cceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCC
Q 005753 214 NISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNN 293 (679)
Q Consensus 214 ~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~ 293 (679)
.+.+++++. |.+++.|++++.|.|++|+..+|..|.++|.++.|.+|..|||||+||+|+|.+.....
T Consensus 153 ~l~i~~~~~-~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~----------- 220 (329)
T cd01366 153 KLEIKHDSK-GETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQT----------- 220 (329)
T ss_pred ceEEEECCC-CCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCC-----------
Confidence 899999984 66999999999999999999999999999999999999999999999999998754321
Q ss_pred ccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccccccccccc
Q 005753 294 SHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSF 373 (679)
Q Consensus 294 s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsL 373 (679)
+....|+|+||||||||+..+.++.|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|
T Consensus 221 ---------~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l 291 (329)
T cd01366 221 ---------GEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSL 291 (329)
T ss_pred ---------CcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccc
Q 005753 374 GGTARTSLVITIGPSPRHRGETASTILFGQRAMKVEN 410 (679)
Q Consensus 374 gGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n 410 (679)
||+++|+||+||||...+++||++||+||+||++|++
T Consensus 292 ~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 292 GGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred CCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999986
No 21
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1e-73 Score=653.82 Aligned_cols=326 Identities=37% Similarity=0.531 Sum_probs=283.0
Q ss_pred CCCCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCC----CCcceeeccccCCCCChHHHHHHhhHHHHH
Q 005753 61 GVPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNW----DAETYEFDEVLTEFASQKRVYQAVAKPVVE 136 (679)
Q Consensus 61 ~~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~ 136 (679)
...|+|||+|||||+.+.+..... ..+...++...+.+..... ..+.|.||+||+|.++|++||..+ .|+|.
T Consensus 311 eLkGnIRV~CRvRP~~~~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~ 386 (670)
T KOG0239|consen 311 ELKGNIRVFCRVRPLLPSEKQRLQ---SKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQ 386 (670)
T ss_pred HhhcCceEEEEecCCCcccccccc---ccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHHH
Confidence 457999999999999998865321 1122222222222222211 123599999999999999999998 89999
Q ss_pred HHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCCCC-
Q 005753 137 SVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLDPT- 211 (679)
Q Consensus 137 ~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~~~- 211 (679)
++++|||+||||||||||||||||.|. .+.++|||||++++||..+... .+.+.+||+|||||.|+|||++.
T Consensus 387 S~lDGYnVCIFAYGQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~ 463 (670)
T KOG0239|consen 387 SALDGYNVCIFAYGQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES 463 (670)
T ss_pred HHhcCcceeEEEecccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc
Confidence 999999999999999999999999663 5667899999999999877653 45799999999999999999987
Q ss_pred -CCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCC
Q 005753 212 -NDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGEN 290 (679)
Q Consensus 212 -~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~ 290 (679)
...+.|+.++. |..+|+|++.+.|.+.+++..+|+.|..+|++++|.+|.+|||||+||+|+|......
T Consensus 464 ~~~k~~I~~~~~-~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~--------- 533 (670)
T KOG0239|consen 464 YVGKLEIVDDAE-GNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINEL--------- 533 (670)
T ss_pred cccceeEEEcCC-CceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccC---------
Confidence 46788999876 5599999999999999999999999999999999999999999999999999754211
Q ss_pred CCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCcccccccc
Q 005753 291 GNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLR 370 (679)
Q Consensus 291 ~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLq 370 (679)
......+.|+|||||||||++++++.|.|++|+.+||+||++||.||.||+.+..||||||||||+|||
T Consensus 534 -----------t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq 602 (670)
T KOG0239|consen 534 -----------TGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQ 602 (670)
T ss_pred -----------cccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhH
Confidence 134567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccccccc
Q 005753 371 DSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKL 414 (679)
Q Consensus 371 dsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v 414 (679)
|+|||++||.|+++|||..+++.||+++|+||.|++.+...+..
T Consensus 603 ~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 603 DSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 99999999999999999999999999999999999999865543
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.8e-71 Score=597.81 Aligned_cols=326 Identities=42% Similarity=0.626 Sum_probs=292.1
Q ss_pred CeEEEEecCCCCchhhhccCCCCceEEeCCCc-eEEEecc--CCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcC
Q 005753 65 RVRVAVRLRTRNAEEMVADADFGDCVELLPEL-KRLKLRK--NNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDG 141 (679)
Q Consensus 65 ~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~-~~~~~~~--~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G 141 (679)
+|+|+|||||++..|...+ ...++.+.+.. +.+.+.. .....+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRK--SPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcC--CceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 5899999999999886543 25677776553 3444332 34556899999999999999999999999999999999
Q ss_pred cceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCCCCCCccee
Q 005753 142 YNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLDPTNDNISI 217 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~~~~~~l~i 217 (679)
+|+||||||+|||||||||+|.+ ..+||+||++++||+.+... .++|++||+|||||.++|||++.+..+.+
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~----~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i 154 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTP----DSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEI 154 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCC----CCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEE
Confidence 99999999999999999998743 35799999999999988653 45799999999999999999999999999
Q ss_pred eecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCcccc
Q 005753 218 AEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMV 297 (679)
Q Consensus 218 ~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~ 297 (679)
++++. |.+++.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+......
T Consensus 155 ~~~~~-~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~-------------- 219 (335)
T smart00129 155 REDKK-GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSS-------------- 219 (335)
T ss_pred EECCC-CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCC--------------
Confidence 99986 569999999999999999999999999999999999999999999999999987532110
Q ss_pred ccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhcc--CCCCccccCcccccccccccCC
Q 005753 298 KTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAE--GSAYVPVRDSKLTRLLRDSFGG 375 (679)
Q Consensus 298 ~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~--~~~~VPyRdSKLTrLLqdsLgG 375 (679)
......|+|+|||||||||..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+||||+||+++|||
T Consensus 220 ----~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g 295 (335)
T smart00129 220 ----SGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGG 295 (335)
T ss_pred ----CCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCC
Confidence 1345789999999999999999999999999999999999999999999999 5679999999999999999999
Q ss_pred CCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccc
Q 005753 376 TARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLK 415 (679)
Q Consensus 376 nskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~ 415 (679)
+++|+||+||+|...+++||++||+||+++++|+|.|+++
T Consensus 296 ~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 296 NSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred CCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 9999999999999999999999999999999999999764
No 23
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-70 Score=604.91 Aligned_cols=324 Identities=32% Similarity=0.529 Sum_probs=276.7
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCC-ceEEEe---------ccCCCCCcceeeccccCCCCChHHHHHHhhH
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPE-LKRLKL---------RKNNWDAETYEFDEVLTEFASQKRVYQAVAK 132 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~-~~~~~~---------~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~ 132 (679)
...|.|+||+||+... ..+ ..|+.+... ...+.. .+.+...+.|.|.+||+|+++|.+||+.++.
T Consensus 30 ~d~v~v~~rvrP~~~~----~~~-~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~ 104 (809)
T KOG0247|consen 30 KDPVLVVCRVRPLSDA----SED-EGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVA 104 (809)
T ss_pred hcchheeEeecCCCCC----ccc-cceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhH
Confidence 4578999999998852 111 345544332 222221 1334557789999999999999999999999
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC------------------------
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD------------------------ 188 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~------------------------ 188 (679)
|+|.+++.|.|+.+|+||.|||||||||.| ++..+||+||+++-||..|+..
T Consensus 105 plV~dlLkgqn~LlFTyGVTgSGKTYTm~G----~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~al 180 (809)
T KOG0247|consen 105 PLVKDLLKGQNSLLFTYGVTGSGKTYTMTG----TPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDAL 180 (809)
T ss_pred HHHHHHHcccceeEEEeeccCCCceEEeec----CCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHH
Confidence 999999999999999999999999999966 3456799999999999655310
Q ss_pred --------------------------------------------CCeEEEEEEEeecceeeecCCCCCC-----c-ceee
Q 005753 189 --------------------------------------------TDSVTVSYLQLYMETIQDLLDPTND-----N-ISIA 218 (679)
Q Consensus 189 --------------------------------------------~~~V~vS~lEIYnE~v~DLL~~~~~-----~-l~i~ 218 (679)
.++|+|||+|||||.|||||.+.+. . ..++
T Consensus 181 L~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~ 260 (809)
T KOG0247|consen 181 LQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLR 260 (809)
T ss_pred HhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhh
Confidence 0159999999999999999987632 2 4456
Q ss_pred ecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCccccc
Q 005753 219 EDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVK 298 (679)
Q Consensus 219 ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~~ 298 (679)
+| .+|.+||.|++||.|.|.+|++++|+.|.++|++++|.+|..|||||+||+|.+.+.....+
T Consensus 261 ~d-~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~--------------- 324 (809)
T KOG0247|consen 261 ED-TNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQD--------------- 324 (809)
T ss_pred hc-cCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccc---------------
Confidence 66 46889999999999999999999999999999999999999999999999999987654310
Q ss_pred cCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC-----CCccccCccccccccccc
Q 005753 299 TLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS-----AYVPVRDSKLTRLLRDSF 373 (679)
Q Consensus 299 ~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~-----~~VPyRdSKLTrLLqdsL 373 (679)
...+..|.|.|||||||||..++++.|.|++||++||.||++||+||.+|..++ .+|||||||||++++.+|
T Consensus 325 ---s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f 401 (809)
T KOG0247|consen 325 ---SNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYF 401 (809)
T ss_pred ---cCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhc
Confidence 145778999999999999999999999999999999999999999999998753 699999999999999999
Q ss_pred CCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccccccc
Q 005753 374 GGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKL 414 (679)
Q Consensus 374 gGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v 414 (679)
.|..+.+||+||+|.+++|+|+++.|+||..|..|.+...+
T Consensus 402 ~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 402 DGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred CCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcc
Confidence 99999999999999999999999999999999998765544
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2e-71 Score=597.26 Aligned_cols=318 Identities=42% Similarity=0.670 Sum_probs=275.0
Q ss_pred ecCCCCchhhhccCCCCceEEeCC--CceEEEe--ccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEE
Q 005753 71 RLRTRNAEEMVADADFGDCVELLP--ELKRLKL--RKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTV 146 (679)
Q Consensus 71 RvRP~~~~E~~~~~~~~~~v~~~~--~~~~~~~--~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tI 146 (679)
||||++..|...+.. .++.... ....... .........|.||+||+++++|++||+.++.|+|+++++|||+||
T Consensus 1 RvRP~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i 78 (335)
T PF00225_consen 1 RVRPLNESEKESSAE--SIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATI 78 (335)
T ss_dssp EEES-CHHHHHTTTE--BCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEE
T ss_pred CcCCCCHHHHhCCCc--EEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEE
Confidence 899999999766543 2333221 1111111 122345678999999999999999999999999999999999999
Q ss_pred EeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC------CCeEEEEEEEeecceeeecCCCC----CCcce
Q 005753 147 MAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD------TDSVTVSYLQLYMETIQDLLDPT----NDNIS 216 (679)
Q Consensus 147 faYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~------~~~V~vS~lEIYnE~v~DLL~~~----~~~l~ 216 (679)
||||+|||||||||+|. .+...+|||||++++||..+... .+.|+|||+|||||.|+|||++. ...+.
T Consensus 79 ~ayG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~ 156 (335)
T PF00225_consen 79 FAYGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLK 156 (335)
T ss_dssp EEEESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBE
T ss_pred Eeecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccc
Confidence 99999999999999875 44567899999999999988753 35799999999999999999987 35799
Q ss_pred eeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCccc
Q 005753 217 IAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHM 296 (679)
Q Consensus 217 i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~ 296 (679)
+++++..|.+++.|++++.|.|+++++.+|..|.++|.++.|.+|..|||||+||+|+|.+........
T Consensus 157 i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~----------- 225 (335)
T PF00225_consen 157 IREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDD----------- 225 (335)
T ss_dssp EEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTE-----------
T ss_pred eeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccccc-----------
Confidence 999998777999999999999999999999999999999999999999999999999999876443110
Q ss_pred cccCCCCeEEeeeEEEEecCCCccccCCCC-CcccHHHHHHhhhhHHHHHHHHHHhccC--CCCccccCccccccccccc
Q 005753 297 VKTLKPPIVRKAKLVVVDLAGSERIDKSGS-EGHTLEEAKSINLSLSALGKCINSLAEG--SAYVPVRDSKLTRLLRDSF 373 (679)
Q Consensus 297 ~~~~~~~~~~~skL~fVDLAGSER~~~t~~-~g~rlkE~~~IN~SL~aLg~vI~aL~~~--~~~VPyRdSKLTrLLqdsL 373 (679)
......|+|+|||||||||..+.+. .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|
T Consensus 226 -----~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l 300 (335)
T PF00225_consen 226 -----EESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSL 300 (335)
T ss_dssp -----EEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGT
T ss_pred -----ccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccc
Confidence 0125789999999999999999886 4888999999999999999999999999 8999999999999999999
Q ss_pred CCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 374 GGTARTSLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 374 gGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
||||+|+||+||+|+..+++||++||+||++|++|
T Consensus 301 ~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 301 GGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp SSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999986
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=9.3e-70 Score=582.65 Aligned_cols=315 Identities=44% Similarity=0.679 Sum_probs=283.7
Q ss_pred CeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC----CCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhc
Q 005753 65 RVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN----NWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLD 140 (679)
Q Consensus 65 ~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~ 140 (679)
+|+|+||+||+...| ..+...++.+.+. ..+.+..+ ....+.|.||+||+++++|++||+.++.|+|+++++
T Consensus 1 ~i~V~vRvrP~~~~~---~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~ 76 (328)
T cd00106 1 NIRVVVRIRPLNGRE---SKSEESCITVDDN-KTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLE 76 (328)
T ss_pred CeEEEEEcCCCCccc---ccCCCcEEEECCC-CEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhC
Confidence 589999999999876 2233567777764 34444433 245789999999999999999999999999999999
Q ss_pred CcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccCC-----CeEEEEEEEeecceeeecCCCC--CC
Q 005753 141 GYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLDT-----DSVTVSYLQLYMETIQDLLDPT--ND 213 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~~-----~~V~vS~lEIYnE~v~DLL~~~--~~ 213 (679)
|+|+||||||+|||||||||+|.. ..+|||||++++||..+.... +.|.+||+|||+|+|+|||++. ..
T Consensus 77 G~~~~i~~yG~tgSGKT~tl~G~~----~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~ 152 (328)
T cd00106 77 GYNGTIFAYGQTGSGKTYTMFGSP----KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSK 152 (328)
T ss_pred CCceeEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCC
Confidence 999999999999999999997743 568999999999999987653 5799999999999999999998 88
Q ss_pred cceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCC
Q 005753 214 NISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNN 293 (679)
Q Consensus 214 ~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~ 293 (679)
.+.+++++. |.+++.|++++.|.|++|++.+|..|.++|.++.|.+|..|||||+||+|+|.+.......
T Consensus 153 ~l~i~~~~~-~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~--------- 222 (328)
T cd00106 153 PLSLREDPK-GGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG--------- 222 (328)
T ss_pred CcEEEEcCC-CCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC---------
Confidence 999999987 5589999999999999999999999999999999999999999999999999887543210
Q ss_pred ccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC--CCccccCccccccccc
Q 005753 294 SHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS--AYVPVRDSKLTRLLRD 371 (679)
Q Consensus 294 s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~--~~VPyRdSKLTrLLqd 371 (679)
.....|+|+||||||||+..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|
T Consensus 223 ---------~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~ 293 (328)
T cd00106 223 ---------RSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQD 293 (328)
T ss_pred ---------ccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHH
Confidence 12568999999999999999999999999999999999999999999999988 9999999999999999
Q ss_pred ccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhh
Q 005753 372 SFGGTARTSLVITIGPSPRHRGETASTILFGQRAM 406 (679)
Q Consensus 372 sLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak 406 (679)
+|||+++|+||+||+|...+++||++||+||+|||
T Consensus 294 ~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 294 SLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred hcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-70 Score=589.29 Aligned_cols=318 Identities=33% Similarity=0.507 Sum_probs=277.8
Q ss_pred CCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCC--------CCCcceeeccccCCCCChHHHHHHhhHHHH
Q 005753 64 GRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNN--------WDAETYEFDEVLTEFASQKRVYQAVAKPVV 135 (679)
Q Consensus 64 ~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~--------~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV 135 (679)
.+|.|+||-||+|..|+.... -+++.+ |....+.++.+. ...+.|.||++||+.++++.||..+++|+|
T Consensus 208 hrI~VCVRKRPLnkkE~~~ke--iDvisv-ps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV 284 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKE--IDVISV-PSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLV 284 (676)
T ss_pred ceEEEEeecCCCCchhccccc--cceEec-cccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHH
Confidence 489999999999999975532 122222 333333332221 235689999999999999999999999999
Q ss_pred HHHhcCcceEEEeeccCCCCccccccCCCC--CCCCCcchHHHHHHHHHhccccCC-----CeEEEEEEEeecceeeecC
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTLGPLGE--EDPATRGIMVRAMEDILAGVSLDT-----DSVTVSYLQLYMETIQDLL 208 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~--~~~~~~GIipra~~~LF~~i~~~~-----~~V~vS~lEIYnE~v~DLL 208 (679)
+.+|+|--+|+||||||||||||||||.-. ......||...+.+|+|..+.... ..|++||||||+.++||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 999999999999999999999999988433 334557999999999999887653 3799999999999999999
Q ss_pred CCCCCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCC
Q 005753 209 DPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSG 288 (679)
Q Consensus 209 ~~~~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~ 288 (679)
+. +..+.+.||.+ +.|.|.||++..|.+.+|++.++..|+..|+++.|..|..|||||+||+|.+.....
T Consensus 365 ~~-k~KLrvLEDg~-QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~~-------- 434 (676)
T KOG0246|consen 365 ND-KKKLRVLEDGN-QQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHGE-------- 434 (676)
T ss_pred cc-ccceEEeecCC-ceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCCc--------
Confidence 97 67789999965 679999999999999999999999999999999999999999999999999975321
Q ss_pred CCCCCccccccCCCCeEEeeeEEEEecCCCccc-cCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccccc
Q 005753 289 ENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERI-DKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTR 367 (679)
Q Consensus 289 ~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~-~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTr 367 (679)
....||++||||||+||. +.+.++.++..||..||+||+||..||+||..++.|+|||.||||.
T Consensus 435 ---------------~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTq 499 (676)
T KOG0246|consen 435 ---------------FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQ 499 (676)
T ss_pred ---------------ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHH
Confidence 235799999999999994 6667788888999999999999999999999999999999999999
Q ss_pred ccccccCC-CCceeeeEecCCCCCChHHhHHHHHHHHHhhccc
Q 005753 368 LLRDSFGG-TARTSLVITIGPSPRHRGETASTILFGQRAMKVE 409 (679)
Q Consensus 368 LLqdsLgG-nskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~ 409 (679)
+|+|||-| |++||||+||||.....+.||||||||+|+|...
T Consensus 500 VLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLs 542 (676)
T KOG0246|consen 500 VLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELS 542 (676)
T ss_pred HHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhc
Confidence 99999999 9999999999999999999999999999999764
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-69 Score=615.17 Aligned_cols=341 Identities=35% Similarity=0.559 Sum_probs=298.6
Q ss_pred cCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeecc
Q 005753 72 LRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQ 151 (679)
Q Consensus 72 vRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGq 151 (679)
|||+...|...+. ..|+.+.|..+++.+.. ..+|+||+||+...+|.++|+.++.|+++.+|+|||+|++||||
T Consensus 1 vRpl~~~e~~~g~--~~c~~~~~~~pqv~ig~----~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQ 74 (913)
T KOG0244|consen 1 VRPLKQMEEEQGC--RRCTEVSPRTPQVAIGK----DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQ 74 (913)
T ss_pred CCCccchHHHhcc--hhhcccCCCCCceeecC----CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecc
Confidence 6999999876654 57888888888877643 46899999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC---CCeEEEEEEEeecceeeecCCCCC--CcceeeecCCCCCe
Q 005753 152 TGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD---TDSVTVSYLQLYMETIQDLLDPTN--DNISIAEDPKTGDV 226 (679)
Q Consensus 152 TgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~---~~~V~vS~lEIYnE~v~DLL~~~~--~~l~i~ed~~~G~v 226 (679)
|||||||||++.........|+|||++.++|..+... .+.|.|||+|||+|.|+|||.|.. .++.+++ + .|.+
T Consensus 75 tgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~-~g~i 152 (913)
T KOG0244|consen 75 TGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-P-KGEI 152 (913)
T ss_pred cCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-c-CCce
Confidence 9999999997653333334799999999999998754 357999999999999999999654 3466666 4 4779
Q ss_pred ecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCccccccCCCCeEE
Q 005753 227 SLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVKTLKPPIVR 306 (679)
Q Consensus 227 ~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 306 (679)
.+.|++++.|.+..++...|..|...|++++|+||..|||||+||++.+++...... ....
T Consensus 153 t~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~-------------------~s~~ 213 (913)
T KOG0244|consen 153 TIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK-------------------RSSF 213 (913)
T ss_pred EEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-------------------cchh
Confidence 999999999999999999999999999999999999999999999999987533211 1234
Q ss_pred eeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCC--CccccCcccccccccccCCCCceeeeEe
Q 005753 307 KAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSA--YVPVRDSKLTRLLRDSFGGTARTSLVIT 384 (679)
Q Consensus 307 ~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~--~VPyRdSKLTrLLqdsLgGnskt~mI~t 384 (679)
.+||+|||||||||.++++++|+|++||++||.+|++||+||+||.+... |||||||||||||||+||||+.|+||+|
T Consensus 214 ~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaC 293 (913)
T KOG0244|consen 214 CSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIAC 293 (913)
T ss_pred hhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeee
Confidence 68999999999999999999999999999999999999999999998765 9999999999999999999999999999
Q ss_pred cCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 005753 385 IGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLIAEHER 440 (679)
Q Consensus 385 IsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l~~e~~~L~~e~e~ 440 (679)
|||+..+.+||++||+||.||+.|+|+|.+|.+... ..+..++.++..|..++-.
T Consensus 294 iSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~-~~~~~lK~ql~~l~~ell~ 348 (913)
T KOG0244|consen 294 ISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKS-FEMLKLKAQLEPLQVELLS 348 (913)
T ss_pred cChhhhhhhhHHHHHHHhhHHHHhcccccccccHHH-HHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999985432 3345667777777666543
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-61 Score=549.95 Aligned_cols=318 Identities=36% Similarity=0.587 Sum_probs=277.9
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCc
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGY 142 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~ 142 (679)
..+++++++..|-...+..... .....+.. ......+|.||+||++.++|++||+..++|++++++.||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~ 89 (568)
T COG5059 21 VSDIKSTIRIIPGELGERLINT---------SKKSHVSL--EKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGY 89 (568)
T ss_pred ecCceEEEeecCCCcchheeec---------cccccccc--ccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcc
Confidence 3678899999886554310100 00111111 111155799999999999999999999999999999999
Q ss_pred ceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCCCCCCcceee
Q 005753 143 NGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLDPTNDNISIA 218 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~~~~~~l~i~ 218 (679)
||||||||||||||||||.|. ...+||||+++.+||..+... .+.|.+||+|||||+++|||.+....+.++
T Consensus 90 N~TvfayGqTgsgKtyt~~G~----~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~ 165 (568)
T COG5059 90 NCTVFAYGQTGSGKTYTMSGT----EEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIR 165 (568)
T ss_pred cceEEEEcccCCCceeEeecC----ccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccccccc
Confidence 999999999999999999653 256899999999999987654 357999999999999999999988777888
Q ss_pred ecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCccccc
Q 005753 219 EDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVK 298 (679)
Q Consensus 219 ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~~ 298 (679)
++... .|.+.|+++..+.+.+|++.+|..|..+|+++.|.+|..|||||+||++.+.+.....
T Consensus 166 ~~~~~-~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~---------------- 228 (568)
T COG5059 166 EDSLL-GVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS---------------- 228 (568)
T ss_pred ccCCC-ceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCc----------------
Confidence 88765 4999999999999999999999999999999999999999999999999998875432
Q ss_pred cCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhcc--CCCCccccCcccccccccccCCC
Q 005753 299 TLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAE--GSAYVPVRDSKLTRLLRDSFGGT 376 (679)
Q Consensus 299 ~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~--~~~~VPyRdSKLTrLLqdsLgGn 376 (679)
.....++|+|||||||||+..++..+.|++|+.+||+||.+||+||++|.+ +..|||||||||||||+++|||+
T Consensus 229 ----~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~ 304 (568)
T COG5059 229 ----GTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGN 304 (568)
T ss_pred ----cceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCC
Confidence 122347999999999999999999999999999999999999999999997 78999999999999999999999
Q ss_pred CceeeeEecCCCCCChHHhHHHHHHHHHhhcccccccccc
Q 005753 377 ARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKE 416 (679)
Q Consensus 377 skt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~ 416 (679)
++|+|||||+|+..+++||.+||+||.||+.|+|.+..+.
T Consensus 305 ~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 305 CNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred ccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999999999999999999999885
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1e-50 Score=402.15 Aligned_cols=179 Identities=47% Similarity=0.710 Sum_probs=166.0
Q ss_pred HHHHhhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccCCCeEEEEEEEeecceee
Q 005753 126 VYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLDTDSVTVSYLQLYMETIQ 205 (679)
Q Consensus 126 Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~~~~V~vS~lEIYnE~v~ 205 (679)
||+.++ |+|+.+++|||+||||||||||||||||.|.. .++||+||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTD------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHH-------------------------
Confidence 999999 99999999999999999999999999997743 567999999998
Q ss_pred ecCCCCCCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccc
Q 005753 206 DLLDPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVA 285 (679)
Q Consensus 206 DLL~~~~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~ 285 (679)
++.+|..|.++|+++.|.+|..|||||+||+|++.+.......
T Consensus 58 ------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~- 100 (186)
T cd01363 58 ------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASA- 100 (186)
T ss_pred ------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCC-
Confidence 7899999999999999999999999999999999876543210
Q ss_pred cCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccc
Q 005753 286 HSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKL 365 (679)
Q Consensus 286 ~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKL 365 (679)
......++|+|||||||||.++++..+.+++|+..||+||++|++||.+|++++.|||||||||
T Consensus 101 ----------------~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkL 164 (186)
T cd01363 101 ----------------TEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKL 164 (186)
T ss_pred ----------------ccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHH
Confidence 1345689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCceeeeEecCC
Q 005753 366 TRLLRDSFGGTARTSLVITIGP 387 (679)
Q Consensus 366 TrLLqdsLgGnskt~mI~tIsP 387 (679)
|+||||+|||||+|+||+||||
T Consensus 165 T~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 165 TRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.96 E-value=4.9e-08 Score=112.59 Aligned_cols=255 Identities=25% Similarity=0.264 Sum_probs=147.6
Q ss_pred CCCCCeEEEEecCCCCch--hhhccCCCCceEEeCCCceEEEe-ccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHH
Q 005753 61 GVPGRVRVAVRLRTRNAE--EMVADADFGDCVELLPELKRLKL-RKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVES 137 (679)
Q Consensus 61 ~~~~~VrV~vRvRP~~~~--E~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~ 137 (679)
|...+++|+|+|+|.+.. |...-..+..-..-.+....... .........|.||.+|.....+..++... ...++.
T Consensus 302 gG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~ 380 (568)
T COG5059 302 GGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQ-SQLSQS 380 (568)
T ss_pred CCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHH-Hhhhhh
Confidence 334599999999998843 21110000000000000000000 01122345799999999999999998876 455777
Q ss_pred HhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccCCCe-----EEEEEEEeecceeeecCCCCC
Q 005753 138 VLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLDTDS-----VTVSYLQLYMETIQDLLDPTN 212 (679)
Q Consensus 138 ~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~~~~-----V~vS~lEIYnE~v~DLL~~~~ 212 (679)
.++| +++||++++|+++||-- ...++..-.+...|......... ..+-++++|-....++.....
T Consensus 381 ~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 450 (568)
T COG5059 381 SLSG----IFAYMQSLKKETETLKS------RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEEL 450 (568)
T ss_pred hhhh----HHHHHhhhhhhhhcccc------hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777 99999999999999931 22366666657777665543322 233334444122222221111
Q ss_pred -Cc-ceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCC
Q 005753 213 -DN-ISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGEN 290 (679)
Q Consensus 213 -~~-l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~ 290 (679)
.. -.+....+.+.-... +.........+..... .....+..+.+..|..++++|.+|+.+.........
T Consensus 451 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~------- 521 (568)
T COG5059 451 SKKKTKIHKLNKLRHDLSS-LLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTK------- 521 (568)
T ss_pred CChHHHHHHHHHHHHHHHH-hhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhhH-------
Confidence 10 000010000000000 0001111111112222 567788899999999999999999877643321100
Q ss_pred CCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhc
Q 005753 291 GNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLA 352 (679)
Q Consensus 291 ~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~ 352 (679)
.. . ++.|||||+||. .+..-|.++++..++|++|..+|.+|.++.
T Consensus 522 ------------~~---~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 522 ------------EL---S-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred ------------HH---H-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 01 1 789999999999 999999999999999999999999998864
No 31
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.036 Score=64.32 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 541 ETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 541 ~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
+..+.++++.++.-|+.|+.++...+......|...+..++....+++..-.+|..|+.+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqar 494 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQAR 494 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344444555555555555555544444433333333333333333333333333333333
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.10 E-value=0.062 Score=63.84 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005753 422 SLARRLDIQLDKLIAEHE 439 (679)
Q Consensus 422 ~l~~~l~~e~~~L~~e~e 439 (679)
..+.+|+.++++|+.++.
T Consensus 418 ~a~~rLE~dvkkLraeLq 435 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQ 435 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455689999999988865
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.92 E-value=0.8 Score=51.58 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=14.5
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 566 EASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 566 ~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
+..+..++.+.+.+|+....+..+++..|..+++
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444443
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.85 E-value=0.25 Score=57.14 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=13.8
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35567999999999876
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.53 E-value=0.78 Score=47.58 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 529 GELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
.+...|+..++..+++...++.++.++...+..++.........+..+++.+..+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666667777777777777777777777777777776666666544
No 36
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.64 Score=56.02 Aligned_cols=85 Identities=12% Similarity=0.207 Sum_probs=51.1
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 517 ASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIAL 596 (679)
Q Consensus 517 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~ 596 (679)
..+.+.+.+++.++|..++++++.....-+..+.+.+.|.-+.++++++.......+..+.+.+.....+...++..+..
T Consensus 782 ~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 782 KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566677777777777777666555555666666666666666666666555555555555555555555555555
Q ss_pred HHHHH
Q 005753 597 LQSQL 601 (679)
Q Consensus 597 L~~~l 601 (679)
.+.+.
T Consensus 862 ~~~~~ 866 (1174)
T KOG0933|consen 862 VEKDV 866 (1174)
T ss_pred HHhHH
Confidence 54443
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.39 E-value=0.57 Score=58.76 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=12.2
Q ss_pred EeeccCCCCccccc
Q 005753 147 MAYGQTGTGKTYTL 160 (679)
Q Consensus 147 faYGqTgSGKTyTm 160 (679)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 45899999999886
No 38
>PRK11637 AmiB activator; Provisional
Probab=96.37 E-value=0.97 Score=50.89 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 555 LKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 555 l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
++.+..++.......+..+.+|.+.+.....+..+++.....|++.|+.+
T Consensus 203 ~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 203 QQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444555566666655566666666666666666643
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.37 E-value=0.12 Score=61.54 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHh
Q 005753 542 TQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQM-------LEDEAHQKKKLEEEIALLQSQLL-QISFEADEVRC 613 (679)
Q Consensus 542 ~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~-------l~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~~~ 613 (679)
+++++++|.|+..|+.++...+..+..+..++.++++. .+........+.|+-..||..|. +...--|+..+
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsa 623 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSA 623 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44556666666666666666655555555555555543 23333345567777777777766 33444444344
Q ss_pred hhhcccchhhhhHh----------------hhhchhhhhhhhhhhheeecccccccceeccc
Q 005753 614 IQNFFACCGLVLSL----------------LFFPLFPLFFSCVSILFKISVPHATGLLLHNV 659 (679)
Q Consensus 614 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (679)
|-.+-.|--+.-+. =+.++.|-...|- -..-..||....++..-
T Consensus 624 Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~~~~--~~~~~~~~~~~~~~~~~ 683 (697)
T PF09726_consen 624 LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDSYCS--AITPPTPHYSSKFLNSS 683 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--CCCCCCccchhhhccCC
Confidence 33322222221111 1345566544441 22346788776666553
No 40
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.36 E-value=0.75 Score=57.74 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
++..+..++.++.......+.++..+..+++....+.+.++.++..|+.++...
T Consensus 393 ~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 446 (1164)
T TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444455555555555555555443
No 41
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.34 E-value=0.46 Score=56.45 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=31.1
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 515 DVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWK 563 (679)
Q Consensus 515 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~ 563 (679)
+...|.++++..++++|.+|++.-+...++.+...+...+|+++++.+.
T Consensus 455 dknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~ 503 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAK 503 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677788888888888887555545555444444456666666553
No 42
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.31 E-value=1.2 Score=54.56 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=46.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQV-AQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~-~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
+...++.+.+..+++-+.....+++.+..++++. ..+..++..+..++..|.++.+...++..++.++...+.+.+.
T Consensus 355 ~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 355 DLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555566666666666666 4555566666666666666666666666666666666665554
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.29 E-value=1.5 Score=50.55 Aligned_cols=19 Identities=37% Similarity=0.401 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 005753 481 DYMESIKKLEERWKINQQK 499 (679)
Q Consensus 481 ~~~~~i~~le~~l~~~~~~ 499 (679)
+...+|..|++.+....++
T Consensus 217 e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 217 EARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666544433
No 44
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.28 E-value=1 Score=57.02 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=19.9
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 566 EASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 566 ~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
++...+++.++...+.....++..++.++..++..+.++..+.+
T Consensus 865 l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 908 (1163)
T COG1196 865 LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444555555555555555544443333
No 45
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.27 E-value=1.3 Score=48.75 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 005753 469 DALEKERLKYQKDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAA 548 (679)
Q Consensus 469 ~~le~e~~~~~~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~ 548 (679)
..+|.|...+-..+-+++++|+.+-...+.++.+.-....-..+..-.-...-+..+.....|.-|+.++++-+.--
T Consensus 193 ntlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l--- 269 (552)
T KOG2129|consen 193 NTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYL--- 269 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44555555555667778888887777777776443322111111110001111223333344444444444322222
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhhcccchh
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQNFFACCG 622 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 622 (679)
-..-....+++.++..+.....++.+.+++.|.++.+-++.+-...+.- +.++++|++|-+....++-|
T Consensus 270 ~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEs-----esslemdeery~Ne~~~~g~ 338 (552)
T KOG2129|consen 270 SRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSES-----ESSLEMDEERYLNEFVDFGD 338 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHhhhhccCC
Confidence 2222356667788888888888888999888887765554443333221 34678888887766555444
No 46
>PRK02224 chromosome segregation protein; Provisional
Probab=96.27 E-value=0.97 Score=55.42 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.2
Q ss_pred EEeeccCCCCccccc
Q 005753 146 VMAYGQTGTGKTYTL 160 (679)
Q Consensus 146 IfaYGqTgSGKTyTm 160 (679)
.+-+|++|||||..+
T Consensus 26 ~~i~G~Ng~GKStil 40 (880)
T PRK02224 26 TVIHGVNGSGKSSLL 40 (880)
T ss_pred EEEECCCCCCHHHHH
Confidence 345999999998775
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.27 E-value=1 Score=48.15 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=24.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVA 560 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~ 560 (679)
........+..++..+...+.....+|..+.+++.++.
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 44566666667777777666667777777766655444
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=0.64 Score=56.89 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
....++++++.-.......++.+..+..++..+++++++...++.+++++.+..+.++.+|..+|..|+..+..+..+++
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444556666666777777777777777777777777777777777777777777777665555544
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.24 E-value=0.75 Score=57.61 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.9
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
+..-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4568999999999887
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.16 E-value=1.2 Score=48.47 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.++..++.++.++..+++....++.+++.+++......+.+.+++..++.+++++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666655555555555555555555544
No 51
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.08 E-value=1.4 Score=52.62 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=9.4
Q ss_pred CcceeeccccCCCCC
Q 005753 108 AETYEFDEVLTEFAS 122 (679)
Q Consensus 108 ~~~F~FD~VF~~~as 122 (679)
...|.+|.=|+-++-
T Consensus 55 ~qYF~Cd~ncG~FVr 69 (1243)
T KOG0971|consen 55 VQYFECDENCGVFVR 69 (1243)
T ss_pred eeeEecCCCcceEee
Confidence 456778776665543
No 52
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.08 E-value=2.2 Score=46.17 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 538 LLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 538 l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
+..-...+..+...++.+-++++++...+..-++-....+++++......++++.+...++..-.
T Consensus 204 ~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 204 VQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566677788888888888888888888888888888887777778877777776644
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=1.1 Score=54.95 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=66.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
....+.+.+++..|...+...+.-...+.+++..+..++.++.....++.+++++......+..++.+++..+.+.+...
T Consensus 517 ~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~ 596 (1293)
T KOG0996|consen 517 ETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS 596 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555544444444444555555555555555555555555555555555555555555555555554433
Q ss_pred hhhhH----HHHhhhhcc------cchh----------hhhHhhhhchhhh--------hhhhhhhheeeccccccccee
Q 005753 605 SFEAD----EVRCIQNFF------ACCG----------LVLSLLFFPLFPL--------FFSCVSILFKISVPHATGLLL 656 (679)
Q Consensus 605 ~~~~~----~~~~~~~~~------~~~~----------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 656 (679)
..... .|| +.-+| .--| ..+|. |+|-+-. .=-||..|.+--+|-||=++|
T Consensus 597 ~s~~kVl~al~r-~kesG~i~Gf~GRLGDLg~Id~kYDvAIsT-ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~L 674 (1293)
T KOG0996|consen 597 RSRNKVLDALMR-LKESGRIPGFYGRLGDLGAIDEKYDVAIST-ACARLDYIVVDTIETAQECINFLKKNNLGRATFIIL 674 (1293)
T ss_pred hhhhHHHHHHHH-HHHcCCCCccccccccccccchHHHHHHHH-hccccceEEeccHHHHHHHHHHHHHcCCCceeEEeh
Confidence 22111 221 22222 1111 12233 3333222 225899999999999998887
Q ss_pred ccc
Q 005753 657 HNV 659 (679)
Q Consensus 657 ~~~ 659 (679)
--.
T Consensus 675 Dki 677 (1293)
T KOG0996|consen 675 DKI 677 (1293)
T ss_pred Hhh
Confidence 543
No 54
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=96.04 E-value=0.14 Score=56.75 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005753 532 TEVKKLLLKETQLRKAAEEEVNNL----KIQVAQWKRSEASGNTEIFKLR-QMLEDEAHQKKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 532 ~~l~~~l~~~~~~~~~~E~~~~~l----~~~~~~~~~~~~~~~~ei~~l~-k~l~~~~~~~~~~~~~i~~L~~~l~~~~~ 606 (679)
..+.+.|+.++-|.+.+|+.++++ +.++..|++++....+.+.-+- ...-+..+.++.|...|++||.+ .-|
T Consensus 247 ~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~---~~Q 323 (395)
T PF10267_consen 247 QFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQ---QQQ 323 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---Hhh
Confidence 356667777888888888777766 4566677777777766666543 33345667889999999999921 112
Q ss_pred hhHHHHhhhhcccchhhhhHh--hhhchhhhhhhhhhhheeecccc
Q 005753 607 EADEVRCIQNFFACCGLVLSL--LFFPLFPLFFSCVSILFKISVPH 650 (679)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 650 (679)
...+.-.++...+. .++..+ +++-|..++..|||-...+..|-
T Consensus 324 q~~q~e~~~n~~~r-~~l~k~inllL~l~~vlLv~vSt~~~~~~Pl 368 (395)
T PF10267_consen 324 QVVQLEGTENSRAR-ALLGKLINLLLTLLTVLLVFVSTVANCPLPL 368 (395)
T ss_pred hhhhhcccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 22211222222221 111111 12234455566777777777763
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.04 E-value=1.2 Score=58.22 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=20.6
Q ss_pred HHHHh-cCcceEEEeeccCCCCcccc
Q 005753 135 VESVL-DGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l-~G~N~tIfaYGqTgSGKTyT 159 (679)
..+.+ ++-|-+|++-|-+|+|||-.
T Consensus 159 Yr~mL~~renQSiLiTGESGAGKTeN 184 (1930)
T KOG0161|consen 159 YRNMLQDRENQSILITGESGAGKTEN 184 (1930)
T ss_pred HHHHHhcCCCceEeeecCCCCCcchh
Confidence 34444 78999999999999999965
No 56
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.99 E-value=2.2 Score=47.66 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=49.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAE----EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E----~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
....++...++.+..++.....++ ++..+|...+.+-++-+..++.++...++.++....+...+...|..++.+.
T Consensus 168 ~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~a 247 (420)
T COG4942 168 ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444443332 2334444444555666677788888888999999999999999999999776
Q ss_pred H
Q 005753 602 L 602 (679)
Q Consensus 602 ~ 602 (679)
+
T Consensus 248 A 248 (420)
T COG4942 248 A 248 (420)
T ss_pred H
Confidence 6
No 57
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=1.3 Score=53.65 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=20.2
Q ss_pred cEEEEecChhHHHHHHHhhhhhccccccccccc
Q 005753 231 VTLVEIRDQHSFVELLKLGEAHRFAANTKLNTE 263 (679)
Q Consensus 231 lt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~ 263 (679)
|-.|.|.+..-...||..|.-.|++.---+|.-
T Consensus 548 LynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI 580 (1174)
T KOG0933|consen 548 LYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKI 580 (1174)
T ss_pred ceeEEeechHHHHHHhhcccccceeEEEechhh
Confidence 345666666667777777777766544444433
No 58
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=2.1 Score=48.74 Aligned_cols=81 Identities=21% Similarity=0.155 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhcccccch----hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 480 KDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCS----DVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNL 555 (679)
Q Consensus 480 ~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l 555 (679)
..|..+|-.|+..|+..++-+.......+.....+ ....+.++..-.+..++.+++-+-.+.-+....+|++---|
T Consensus 103 ~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsL 182 (772)
T KOG0999|consen 103 EYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISL 182 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 45777777777777766555443322111111111 22222333333455555555544444444444555555555
Q ss_pred HHHHH
Q 005753 556 KIQVA 560 (679)
Q Consensus 556 ~~~~~ 560 (679)
+.++.
T Consensus 183 QKqVs 187 (772)
T KOG0999|consen 183 QKQVS 187 (772)
T ss_pred HHHHH
Confidence 55554
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=1.3 Score=51.96 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=8.8
Q ss_pred hhHHHHHHHhcCcce
Q 005753 130 VAKPVVESVLDGYNG 144 (679)
Q Consensus 130 ~~~plV~~~l~G~N~ 144 (679)
++..||...|.|+..
T Consensus 73 IAmkLi~lkLqG~~l 87 (1118)
T KOG1029|consen 73 IAMKLIKLKLQGIQL 87 (1118)
T ss_pred HHHHHHHHHhcCCcC
Confidence 445566666666654
No 60
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.86 E-value=1.7 Score=55.27 Aligned_cols=6 Identities=17% Similarity=-0.114 Sum_probs=2.5
Q ss_pred CCChHH
Q 005753 120 FASQKR 125 (679)
Q Consensus 120 ~asQ~~ 125 (679)
.++..+
T Consensus 118 ~~~~~d 123 (1163)
T COG1196 118 KVRLKD 123 (1163)
T ss_pred EeeHHH
Confidence 344443
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.85 E-value=2 Score=49.75 Aligned_cols=56 Identities=21% Similarity=0.177 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
....++.+++.++.+.+..+.....+...++.+++.........++++..|+.+|.
T Consensus 334 ~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 33444455555554444444444444444444444443333334444444444444
No 62
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.84 E-value=1.8 Score=54.20 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=2.4
Q ss_pred EEEEec
Q 005753 67 RVAVRL 72 (679)
Q Consensus 67 rV~vRv 72 (679)
.|.+.+
T Consensus 78 ~v~~~~ 83 (1179)
T TIGR02168 78 EVELVF 83 (1179)
T ss_pred EEEEEE
Confidence 344443
No 63
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.78 E-value=0.83 Score=52.51 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 477 KYQKDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLK 556 (679)
Q Consensus 477 ~~~~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~ 556 (679)
.....++.+|..|.++++..+.++....... .....++......+.+++..+..-+.+.+.+|.++..|+
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~----------~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEKER----------RGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777765555554332210 011223444555566666666666666565555555555
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 557 IQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 557 ~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.+ ...+..+|...+++|+.+..-+...+-.+..|.++|+-+.
T Consensus 176 ~e-------n~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 176 AE-------NSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HH-------hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44 4445566777788888887777778888888888877554
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.73 E-value=3.6 Score=44.03 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.+...+.+++.+.......+....+++.+++..+.....+..++...+..|+.++.
T Consensus 192 ~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 192 WYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 33444455555444444444444444444444444444444444444444444443
No 65
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.70 E-value=4.2 Score=44.56 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHhccC------CCCccccCcccccccccccCC-CCceeeeEecCCCCCChHHhHHHHHHHHH
Q 005753 339 LSLSALGKCINSLAEG------SAYVPVRDSKLTRLLRDSFGG-TARTSLVITIGPSPRHRGETASTILFGQR 404 (679)
Q Consensus 339 ~SL~aLg~vI~aL~~~------~~~VPyRdSKLTrLLqdsLgG-nskt~mI~tIsP~~~~~~ETlsTL~fa~r 404 (679)
.+.+.||.||..+.+. ..|.. .||= .-.|.+|+||-...---.-||.-|-.+++
T Consensus 7 ~~vlvLgGVIA~~gD~ig~kvGkarLr------------lF~LRPkqTAvlvtvltG~liSA~tLailf~~~~ 67 (499)
T COG4372 7 PFVLVLGGVIAYAGDTIGKKVGKARLR------------LFGLRPKQTAVLVTVLTGMLISAATLAILFLLNR 67 (499)
T ss_pred HHHHHHHhHHHHHhhHHHhhhhHHHHh------------HhccCcccceeehhhhhcchhhHHHHHHHHHhhh
Confidence 3578899999998763 12211 1221 34678888876665555667776655543
No 66
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.68 E-value=2.5 Score=50.64 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=41.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEA 584 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~ 584 (679)
.+++++..+|...|++..+....+|.+.......++.++.++.....++++++..+....
T Consensus 462 ~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~ 521 (980)
T KOG0980|consen 462 DDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLA 521 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 366666667776776666666666667777777777777777777777777776655443
No 67
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.65 E-value=2.3 Score=50.89 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=21.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 520 AKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRS 565 (679)
Q Consensus 520 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~ 565 (679)
+.+.+.+...+...++.+.+......+.++.++..+..++.+++..
T Consensus 471 L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 471 LNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445555555555555444444
No 68
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.63 E-value=1.8 Score=56.69 Aligned_cols=84 Identities=21% Similarity=0.335 Sum_probs=42.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNL--------------KIQVAQWKRSEASGNTEIFKLRQMLEDEAHQK 587 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l--------------~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~ 587 (679)
+....++..+.+++..+++++..+...|...+++ +.+..++...+.....++..++..++++....
T Consensus 1013 k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~ 1092 (1930)
T KOG0161|consen 1013 KAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEV 1092 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444556666666666666555554444333332 33333444444444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 005753 588 KKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 588 ~~~~~~i~~L~~~l~~~~ 605 (679)
.++...|..|+.++.++.
T Consensus 1093 ~~l~k~i~eL~~~i~el~ 1110 (1930)
T KOG0161|consen 1093 AQLQKQIKELEARIKELE 1110 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554443
No 69
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.62 E-value=5.3 Score=46.31 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhh
Q 005753 481 DYMESIKKLEERWKINQQKQGSDRI 505 (679)
Q Consensus 481 ~~~~~i~~le~~l~~~~~~~~~~~~ 505 (679)
.+.+++..|+..+..++..+...+.
T Consensus 200 ~le~ki~~lq~a~~~t~~el~~~~s 224 (629)
T KOG0963|consen 200 ELEKKISSLQSAIEDTQNELFDLKS 224 (629)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4555666666666555555544443
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.58 E-value=1.1 Score=46.57 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=37.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLED----EAHQKKKLEEEIALLQ 598 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~----~~~~~~~~~~~i~~L~ 598 (679)
.+..+..++..++.++......-..+..+++.++.+...+...+......+...+..++. ..++......++..|.
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~ 169 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444444444444444444444444444444444444433 3333444455555555
Q ss_pred HHHH
Q 005753 599 SQLL 602 (679)
Q Consensus 599 ~~l~ 602 (679)
+.+.
T Consensus 170 ~~l~ 173 (239)
T COG1579 170 EKLD 173 (239)
T ss_pred HhcC
Confidence 5543
No 71
>PRK02224 chromosome segregation protein; Provisional
Probab=95.42 E-value=1.3 Score=54.20 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 581 EDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 581 ~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.....+...+.+.+..|+.++..+.
T Consensus 338 ~~~~~~~e~~~~~~~~le~~~~~l~ 362 (880)
T PRK02224 338 QAHNEEAESLREDADDLEERAEELR 362 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445555555555555443
No 72
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.42 E-value=2 Score=54.65 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=16.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRK 546 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~ 546 (679)
.+.....+|..|++.|+...+.+.
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 466777888888887776555554
No 73
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.34 E-value=4.7 Score=47.07 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005753 423 LARRLDIQLDKLIAEHE 439 (679)
Q Consensus 423 l~~~l~~e~~~L~~e~e 439 (679)
...++..++..|...++
T Consensus 347 eLdK~~~~i~~Ln~~le 363 (961)
T KOG4673|consen 347 ELDKTKKEIKMLNNALE 363 (961)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555544433
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.31 E-value=3.6 Score=52.50 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=6.7
Q ss_pred chHHHHHHHHHh
Q 005753 172 GIMVRAMEDILA 183 (679)
Q Consensus 172 GIipra~~~LF~ 183 (679)
.=||+.+.-+++
T Consensus 181 ~hI~kli~~vln 192 (1201)
T PF12128_consen 181 QHIEKLINAVLN 192 (1201)
T ss_pred cChHHHHHHHHh
Confidence 445666665543
No 75
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.28 E-value=7.2 Score=45.08 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 570 NTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 570 ~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
..+...++.+|-...+....-+.+...|.++|.
T Consensus 282 ~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~ 314 (546)
T PF07888_consen 282 QQENEALKEQLRSAQEQLQASQQEAELLRKELS 314 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443444444444444444443
No 76
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.28 E-value=3.3 Score=48.48 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=44.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQL----------RKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEE 592 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~----------~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~ 592 (679)
.+........++...++.-.+. ...++++++.++.++..+.............++.+++....+.+.++.
T Consensus 318 ~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~ 397 (569)
T PRK04778 318 FLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK 397 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555444433 566677777777777766666666555555555555555554444444
Q ss_pred HHHHHHHHHH
Q 005753 593 EIALLQSQLL 602 (679)
Q Consensus 593 ~i~~L~~~l~ 602 (679)
+...+...+.
T Consensus 398 eq~ei~e~l~ 407 (569)
T PRK04778 398 EQEKLSEMLQ 407 (569)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 77
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.23 E-value=5.6 Score=43.07 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=49.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAE----EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E----~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
.+.+.-..|+.++...++.....+ .++..+++++.+...+......++.+++.++.......+...+.+..+..++
T Consensus 176 ~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 176 KLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555554443 4677777777777777666666666666666666666666666666666666
Q ss_pred Hhhhhh
Q 005753 602 LQISFE 607 (679)
Q Consensus 602 ~~~~~~ 607 (679)
+++...
T Consensus 256 ~~ae~~ 261 (312)
T smart00787 256 AEAEKK 261 (312)
T ss_pred HHHHHH
Confidence 555443
No 78
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.11 E-value=1.3 Score=47.37 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=45.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQ 578 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k 578 (679)
+....+..+|.+.|...+..+..+..++++|++++.++...+...++++..+|+
T Consensus 251 k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 251 KQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334444558888888888888888999999999999999999999999988875
No 79
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.07 E-value=4.6 Score=47.71 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 005753 533 EVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFK 575 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~ 575 (679)
++...|+-++...+.+...+.+++.++.+++..++....++..
T Consensus 185 elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~ 227 (617)
T PF15070_consen 185 ELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQS 227 (617)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444444444444444444444444444444333333
No 80
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.07 E-value=4.5 Score=49.12 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=53.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
...+...+|..+.+.|.+.......++....++++|+.++...++.....+..+...+-...++.+-+-.+|..|+-
T Consensus 482 et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 482 ETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34445555666666677666666677777777777777777777777777777777666666666677777776666
No 81
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.02 E-value=1.3 Score=47.70 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=25.5
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 559 VAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 559 ~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
++++..+.+.+.+++....+.-.+.+++++++.+-+..|+..+.
T Consensus 247 i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 33444555555555555555555556666677666666665543
No 82
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.00 E-value=4.4 Score=48.91 Aligned_cols=124 Identities=15% Similarity=0.279 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhcccccch-hhhhh----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 005753 480 KDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCS-DVASN----------AKDSMASIVGELTEVKKLLLKETQLRKAA 548 (679)
Q Consensus 480 ~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~i~~l~~~l~~~~~~~~~~ 548 (679)
..|...++.++.++...+..+......+..-+..+ ..+++ +...+.....++..++..+++.+.. ...
T Consensus 468 e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~-~e~ 546 (775)
T PF10174_consen 468 ETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRAN-AEL 546 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-Hhh
Confidence 34555666666666655555554443322211111 11111 1122334444444555555442211 122
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
-..+..|...+.....+..+...+|+.|...|.....++...+.+|..|+++|..+
T Consensus 547 ~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~ 602 (775)
T PF10174_consen 547 RDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKA 602 (775)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 34666777777778888888899999999999999999999999999999997643
No 83
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=94.97 E-value=6.3 Score=42.20 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005753 534 VKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLE 581 (679)
Q Consensus 534 l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~ 581 (679)
.+-.++...++..++.++++.+-+++++++.-+.+-++-....+.+++
T Consensus 206 ak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~e 253 (391)
T KOG1850|consen 206 AKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEME 253 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333455555666677777888888888777777665554444444444
No 84
>PRK09039 hypothetical protein; Validated
Probab=94.95 E-value=2.4 Score=46.45 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 527 IVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 527 ~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
...+...++..|..++.......-.+..|+.+++.++..+..++++|...+.+..+.+.+.+.++.++...-
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666666666677666666666666666666666555555555555555543
No 85
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.94 E-value=5.7 Score=43.18 Aligned_cols=54 Identities=24% Similarity=0.224 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.+++..+..++...+..+...+.++..+...++....++..+.++|..+++.+.
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555555555555555444
No 86
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.92 E-value=5.2 Score=51.85 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
+++.-+|++|+|||.+|
T Consensus 28 ~~~~l~G~NGaGKSTll 44 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTM 44 (1486)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35667899999999987
No 87
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.91 E-value=8.3 Score=47.52 Aligned_cols=86 Identities=23% Similarity=0.247 Sum_probs=48.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh--------hchHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRK-------AAEEEVNNLKIQVAQWKRSEA--------SGNTEIFKLRQMLEDEAHQK 587 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~-------~~E~~~~~l~~~~~~~~~~~~--------~~~~ei~~l~k~l~~~~~~~ 587 (679)
....+..++..+.+.++.-+.... ..++.+++++..++.+++... ..+.++.+....++....+.
T Consensus 331 e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~ev 410 (1074)
T KOG0250|consen 331 EVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEV 410 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 344555666666665554443332 334444455444444443333 34445566666666777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 005753 588 KKLEEEIALLQSQLLQISFEA 608 (679)
Q Consensus 588 ~~~~~~i~~L~~~l~~~~~~~ 608 (679)
+++++.+..|.+++.....++
T Consensus 411 ek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 411 EKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766554444
No 88
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.88 E-value=8 Score=42.98 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLE 591 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~ 591 (679)
.+....+-.++++.+..++.|++++++|+..+..+-.++
T Consensus 356 ~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 356 VRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556788888888888899998887776555444
No 89
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.85 E-value=0.93 Score=52.11 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=34.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.+..+...+..|..+|.....+...+++.+.+|+.++++-+.. ....|++...+..+|.++..+|..+|+
T Consensus 297 El~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~----------~e~~L~~kd~~i~~mReec~~l~~Elq 366 (546)
T KOG0977|consen 297 ELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRS----------FEQALNDKDAEIAKMREECQQLSVELQ 366 (546)
T ss_pred HHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhh----------hhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555556666666666555432211 112333334455555555555555554
No 90
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.81 E-value=5.8 Score=46.65 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 573 IFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 573 i~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
|.+.+..|+....+-+.+..+|..|...|.
T Consensus 500 I~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 500 IRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555544
No 91
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=94.80 E-value=0.89 Score=49.45 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005753 532 TEVKKLLLKETQLRKAAEEEVNNL----KIQVAQWKRSEASGNTEIFKLRQM-LEDEAHQKKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 532 ~~l~~~l~~~~~~~~~~E~~~~~l----~~~~~~~~~~~~~~~~ei~~l~k~-l~~~~~~~~~~~~~i~~L~~~l~~~~~ 606 (679)
.-+-+.|+.|+-+.+.+|+.++++ +.++..|+++++.+.+.+.-+.-+ --+..+..++|...|++||-+..+ +
T Consensus 295 ~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~--q 372 (455)
T KOG3850|consen 295 KFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQ--Q 372 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 355567778888888888888776 456667788888887777765533 335667889999999999877542 2
Q ss_pred hhHHHHhhh------hcccchhhhhHhhhhc
Q 005753 607 EADEVRCIQ------NFFACCGLVLSLLFFP 631 (679)
Q Consensus 607 ~~~~~~~~~------~~~~~~~~~~~~~~~~ 631 (679)
+..+...++ .-++|-..+|+|+-.-
T Consensus 373 qv~Q~e~~~na~a~~llgk~iNiiLalm~Vl 403 (455)
T KOG3850|consen 373 QVVQLEGLENAVARRLLGKFINIILALMTVL 403 (455)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 333332222 2456666666665443
No 92
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.67 E-value=5.3 Score=39.98 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
.++.=+-+-...+...+..+..+.+-++..+.-...+.-+|+.|+.+|.+.
T Consensus 141 ~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 141 EFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333344556666777888888888888888899999999999998654
No 93
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.62 E-value=3.1 Score=43.10 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 544 LRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 544 ~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
+...++..+..|..++.+.....+.....+..|.+.+.....+.....+....++.+
T Consensus 170 re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 170 REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433333333333333333
No 94
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.62 E-value=0.42 Score=48.04 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=62.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL- 601 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l- 601 (679)
.......++.+....|..-......++.++..+...+.+..+..+..+.|+..++-++........+++.+-..|-+++
T Consensus 103 ~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 103 ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666677777777778888888888888888888888888888888888888888888888888888884
Q ss_pred HhhhhhhHHH
Q 005753 602 LQISFEADEV 611 (679)
Q Consensus 602 ~~~~~~~~~~ 611 (679)
+.-.++||.|
T Consensus 183 ~~k~~eAe~m 192 (194)
T PF08614_consen 183 QRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHHHh
Confidence 4567777765
No 95
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.60 E-value=1.9 Score=41.26 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=42.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.+..+..+...++..|..-+..+..+.+.+++.+.++.++..-.......|..+..+ ....++.....+..|..++.
T Consensus 60 el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e---k~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 60 ELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE---KVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 344555555566666666666666666666666666666665555444444333322 22233344445555555554
Q ss_pred h
Q 005753 603 Q 603 (679)
Q Consensus 603 ~ 603 (679)
+
T Consensus 137 ~ 137 (140)
T PF10473_consen 137 E 137 (140)
T ss_pred h
Confidence 3
No 96
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.54 E-value=6.6 Score=48.39 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 537 LLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 537 ~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.+++.++...+..+..+.|+.+-..|...-......|..|...+++-.......+.++..|++++.
T Consensus 1676 l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1676 LLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Confidence 334444444444444555555555444444444444555554444444455555556666666654
No 97
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.49 E-value=8.3 Score=41.44 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005753 552 VNNLKIQVAQWKRSEASGNTEIFKLRQ 578 (679)
Q Consensus 552 ~~~l~~~~~~~~~~~~~~~~ei~~l~k 578 (679)
++.|..++..+..+...+..++..|++
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~ 163 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRR 163 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444554444444444444444443
No 98
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.49 E-value=5.7 Score=41.67 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------chHHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEAS-------------------------GNTEIFKLRQMLEDEA 584 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~-------------------------~~~ei~~l~k~l~~~~ 584 (679)
.+.-|+..|..-+..-..++.++..++.+++........ ....+++|+..+..+.
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkev 175 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEV 175 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHH
Confidence 344555555555555566666777777776655444332 2367889999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005753 585 HQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 585 ~~~~~~~~~i~~L~~~l~ 602 (679)
++++++|.++..|+....
T Consensus 176 eerkrle~e~k~lq~k~~ 193 (307)
T PF10481_consen 176 EERKRLEAEVKALQAKKA 193 (307)
T ss_pred HHHhhHHHHHHHHhcccC
Confidence 999999999999996543
No 99
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=5.8 Score=47.24 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 572 EIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 572 ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
++.+++.++.......+.+.++|+.|+.++
T Consensus 856 ~ls~l~~~~k~~~nli~~ltEk~~sl~~qa 885 (970)
T KOG0946|consen 856 KLSNLQEKIKFGNNLIKELTEKISSLEAQA 885 (970)
T ss_pred HHHHHHHHhhhhhhHHHHHhhhhhhHHHhh
Confidence 444455555566666667777777776553
No 100
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.36 E-value=2.3 Score=51.54 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005753 569 GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 569 ~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~ 606 (679)
+++.+..++.+....+.+.+++.+++.+|+.+-+++..
T Consensus 306 lkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~ 343 (1195)
T KOG4643|consen 306 LKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDG 343 (1195)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444555556666666666665544433
No 101
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.21 E-value=11 Score=46.60 Aligned_cols=96 Identities=25% Similarity=0.257 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005753 527 IVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 527 ~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~ 606 (679)
....+.+++..+.+.......++..+..+..+..+.........+.+.+..+.++........+++.+..++..+..+..
T Consensus 366 l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (908)
T COG0419 366 LEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLES 445 (908)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555556666777888888888888888888888888888888888878888888888888887765543
Q ss_pred hhHHHHhhhhcccchh
Q 005753 607 EADEVRCIQNFFACCG 622 (679)
Q Consensus 607 ~~~~~~~~~~~~~~~~ 622 (679)
....+..+...+..|-
T Consensus 446 ~~~~~~~l~~~~~~CP 461 (908)
T COG0419 446 KELMIAELAGAGEKCP 461 (908)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 3112233433455554
No 102
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.20 E-value=2.7 Score=49.19 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhh
Q 005753 439 ERQQKAFENEIERITIEAQNQISETERNYADALEKERLKYQKDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVAS 518 (679)
Q Consensus 439 e~~~~~~~~e~~~~~~e~~~~l~e~e~~~~~~le~e~~~~~~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (679)
+........-+..+..+...|+.+++..|....+.-...-.....+.++.+++++......+...+..
T Consensus 207 ~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~------------ 274 (560)
T PF06160_consen 207 EEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELD------------ 274 (560)
T ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH------------
Confidence 33444444555566667778888888877754432222222345666666666666555555443331
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005753 519 NAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQ 578 (679)
Q Consensus 519 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k 578 (679)
..+........+|..|=..+++|..-+...++.+..+...+.+.......+..++..++.
T Consensus 275 ~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 275 EVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344566666666666676666666655555555555555555555555554444443
No 103
>PRK12704 phosphodiesterase; Provisional
Probab=94.15 E-value=12 Score=43.33 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 005753 593 EIALLQSQ 600 (679)
Q Consensus 593 ~i~~L~~~ 600 (679)
.|+..+.+
T Consensus 174 ~~~~~~~~ 181 (520)
T PRK12704 174 LIKEIEEE 181 (520)
T ss_pred HHHHHHHH
Confidence 33333433
No 104
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.13 E-value=5.7 Score=43.88 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005753 468 ADALEKERLKYQKDYMESIKKLEERWKINQQKQG 501 (679)
Q Consensus 468 ~~~le~e~~~~~~~~~~~i~~le~~l~~~~~~~~ 501 (679)
+..++.++.-....++.+|++|+.+-...+.++.
T Consensus 149 Eq~leqeqef~vnKlm~ki~Klen~t~~kq~~le 182 (552)
T KOG2129|consen 149 EQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLE 182 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHH
Confidence 3344445544445566667766655444443333
No 105
>PRK09039 hypothetical protein; Validated
Probab=94.07 E-value=9.2 Score=41.99 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 005753 546 KAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQ-KKKLEEEIALLQSQL 601 (679)
Q Consensus 546 ~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~-~~~~~~~i~~L~~~l 601 (679)
++++..+..|+..++..+......+..|..++..|+....+ ...++.+.+.+-.+|
T Consensus 147 ~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 147 AALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33334455555555555555555666666666666665433 445555555554444
No 106
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.04 E-value=13 Score=43.17 Aligned_cols=48 Identities=23% Similarity=0.215 Sum_probs=38.4
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 005753 564 RSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEV 611 (679)
Q Consensus 564 ~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~ 611 (679)
.+.....+++.=....|++...-...++.++..|..+++.+++..+..
T Consensus 228 ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 228 EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 345566778888888899998888899999999999998887766644
No 107
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.00 E-value=6 Score=46.38 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 005753 590 LEEEIALLQSQLL 602 (679)
Q Consensus 590 ~~~~i~~L~~~l~ 602 (679)
..++|..|..+|.
T Consensus 453 ~~~~i~~l~~~L~ 465 (569)
T PRK04778 453 VSDEIEALAEELE 465 (569)
T ss_pred HHHHHHHHHHHhc
Confidence 3444444444433
No 108
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.98 E-value=8.6 Score=43.97 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 005753 541 ETQLRKAAEEEVNNLKIQVAQWKRSEAS-------GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADE 610 (679)
Q Consensus 541 ~~~~~~~~E~~~~~l~~~~~~~~~~~~~-------~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~ 610 (679)
+.....++++++.++.+.+++.....+. .+..+..+.+.|.+...+-.+..+....|+++-.+|...++.
T Consensus 345 e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~ 421 (570)
T COG4477 345 ELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLER 421 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344467788888888888877666655 455566666666666666677777777777776677666663
No 109
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.97 E-value=16 Score=42.84 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=49.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
.+-+..+-..+.+.+++++.+....+++...++.++++++.....+..++.+++..++..
T Consensus 706 ~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~ 765 (961)
T KOG4673|consen 706 LSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQE 765 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788999999999999999999999999999999988888888887776655533
No 110
>PRK03918 chromosome segregation protein; Provisional
Probab=93.97 E-value=8.2 Score=47.36 Aligned_cols=14 Identities=43% Similarity=0.762 Sum_probs=12.1
Q ss_pred EeeccCCCCccccc
Q 005753 147 MAYGQTGTGKTYTL 160 (679)
Q Consensus 147 faYGqTgSGKTyTm 160 (679)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 47999999999775
No 111
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.81 E-value=16 Score=42.27 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 005753 592 EEIALLQSQ 600 (679)
Q Consensus 592 ~~i~~L~~~ 600 (679)
..|+..+.+
T Consensus 167 ~~~~~~~~~ 175 (514)
T TIGR03319 167 KLIKEIEEE 175 (514)
T ss_pred HHHHHHHHH
Confidence 334444444
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.80 E-value=0.099 Score=59.23 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=52.5
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccccC----CCCC---CCCCcchHHHHHHHH
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGP----LGEE---DPATRGIMVRAMEDI 181 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G----~g~~---~~~~~GIipra~~~L 181 (679)
..|....-|.|.-+|-.-- ..+|+.+-.|.-.-+ -.|.|||||||||-. .+-. -..+.-+......++
T Consensus 3 ~~F~l~s~f~PaGDQP~AI----~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEAI----AELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcHHHH----HHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 3577777789999997644 445666666654443 469999999999921 0000 011222322222222
Q ss_pred HhccccCCCeEEEEEEEeecceee
Q 005753 182 LAGVSLDTDSVTVSYLQLYMETIQ 205 (679)
Q Consensus 182 F~~i~~~~~~V~vS~lEIYnE~v~ 205 (679)
=.....+.-...|||+.-|.-.-|
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHhCcCcceEEEeeeccccCcccc
Confidence 222223334579999999865543
No 113
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.79 E-value=0.046 Score=55.88 Aligned_cols=49 Identities=35% Similarity=0.584 Sum_probs=31.0
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|+||.-+.. ..++..|..+ ..+.+.--..+|. +|-||++|+||||-|
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~-~~ia~~~~~~~~~-l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAA-KAIAENPGERYNP-LFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHH-HHHHHSTTTSSSE-EEEEESTTSSHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHH-HHHHhcCCCCCCc-eEEECCCCCCHHHHH
Confidence 37999987754 4466777544 4444442222444 788999999999988
No 114
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.78 E-value=0.98 Score=45.96 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=7.0
Q ss_pred hhhhhhHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLK 540 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~ 540 (679)
..++.++++++++|.+
T Consensus 96 p~le~el~~l~~~l~~ 111 (206)
T PRK10884 96 PDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 115
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.77 E-value=6.4 Score=46.33 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=5.4
Q ss_pred ccccCcccccc
Q 005753 358 VPVRDSKLTRL 368 (679)
Q Consensus 358 VPyRdSKLTrL 368 (679)
.+||..|..++
T Consensus 239 ~e~~~~K~~~l 249 (594)
T PF05667_consen 239 EEYRKRKQQRL 249 (594)
T ss_pred hhhhHHHHHHH
Confidence 35555544444
No 116
>PRK03918 chromosome segregation protein; Provisional
Probab=93.72 E-value=9.3 Score=46.85 Aligned_cols=13 Identities=0% Similarity=-0.207 Sum_probs=7.2
Q ss_pred ecCCCCCChHHhH
Q 005753 384 TIGPSPRHRGETA 396 (679)
Q Consensus 384 tIsP~~~~~~ETl 396 (679)
|=+|-..++.+.+
T Consensus 441 c~~~L~~~~~~el 453 (880)
T PRK03918 441 CGRELTEEHRKEL 453 (880)
T ss_pred CCCcCCchhHHHH
Confidence 5566666554443
No 117
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.70 E-value=12 Score=48.51 Aligned_cols=13 Identities=46% Similarity=0.442 Sum_probs=8.9
Q ss_pred cccccccccccCC
Q 005753 363 SKLTRLLRDSFGG 375 (679)
Q Consensus 363 SKLTrLLqdsLgG 375 (679)
+.+|+.|+|+|--
T Consensus 211 ~~i~~fl~~yll~ 223 (1486)
T PRK04863 211 SAITRSLRDYLLP 223 (1486)
T ss_pred HhHHHHHHHHcCC
Confidence 4677778777744
No 118
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.61 E-value=12 Score=40.20 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhh-hcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 481 DYMESIKKLEERWKINQQKQGSDRIM-VRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQV 559 (679)
Q Consensus 481 ~~~~~i~~le~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~ 559 (679)
.+.++++.|++.-...+......... ...+.++......-.+...+...+|..|...|.+........+++|-.|..++
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665555444333322211 11111222333334455667777777888777777666677778888888888
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 560 AQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 560 ~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
-.++..+..+..+-++++..|...+..-..+..++..|+..-+
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877777777777777766644
No 119
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=18 Score=43.05 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=56.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
....++..+...++........+.+.+..|+.+++...+.++.....+.++.-+|+........+++++.+|..-|..
T Consensus 542 ~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 542 KLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555556666777888888888888888888888888888888877778888888888888763
No 120
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.54 E-value=13 Score=45.39 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
++..++..+.+--..-+.++..+++.+.+++++.........++.++...-...-.+++++...|..++.+|..+
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344455555555555555555555555555554444444456778888888888887755
No 121
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.40 E-value=13 Score=39.79 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
..+..++..+-...+....+...++.++.........+.+++..++.+|.
T Consensus 189 qe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 189 QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444444444444444444443
No 122
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.35 E-value=11 Score=39.05 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 528 VGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 528 ~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.+-|.+|++.-.....-+.+.+=.+.++..++.+.-...+.+..|+.+.+..|+.. ..+.++.+-|..+|+.-.
T Consensus 111 ~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesv----qRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 111 RKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESV----QRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34445555533332223333444556777777777777777777777666555544 566777777777776444
No 123
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=4.1 Score=46.77 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=5.2
Q ss_pred HHHHHHhccc
Q 005753 177 AMEDILAGVS 186 (679)
Q Consensus 177 a~~~LF~~i~ 186 (679)
++..||..+.
T Consensus 108 iFkfLY~~Ld 117 (581)
T KOG0995|consen 108 IFKFLYGFLD 117 (581)
T ss_pred HHHHHHhccC
Confidence 4555555443
No 124
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.25 E-value=12 Score=46.54 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=19.8
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 561 QWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 561 ~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
+++.....+++.+..+..++...++.++...+.+..++++
T Consensus 627 ~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~ 666 (1317)
T KOG0612|consen 627 ELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKE 666 (1317)
T ss_pred HHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555545555555555555554
No 125
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.24 E-value=18 Score=44.13 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.0
Q ss_pred hheeecccccccceeccccC
Q 005753 642 ILFKISVPHATGLLLHNVGS 661 (679)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~ 661 (679)
-+|.--|||.+|++.|+-++
T Consensus 1031 evF~~LVp~G~a~iim~k~d 1050 (1200)
T KOG0964|consen 1031 EVFSRLVPGGTALIIMRKRD 1050 (1200)
T ss_pred HHHHHhCCCCceeehhhccc
Confidence 45666799999999998776
No 126
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.15 E-value=10 Score=46.68 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=58.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQW-KRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~-~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
+++...+.+..++..++.....+.+++..+.++ ++++.- ++.-+....++.+.++.+.....+..++..+|..+++++
T Consensus 808 ~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~i 886 (1141)
T KOG0018|consen 808 RVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKI 886 (1141)
T ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 456666677777777777777777777777766 555441 333344566777888888888888888888888888887
Q ss_pred Hhhhhh
Q 005753 602 LQISFE 607 (679)
Q Consensus 602 ~~~~~~ 607 (679)
.....+
T Consensus 887 e~~~~e 892 (1141)
T KOG0018|consen 887 ERKESE 892 (1141)
T ss_pred HHHHHH
Confidence 765443
No 127
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=14 Score=42.26 Aligned_cols=77 Identities=22% Similarity=0.139 Sum_probs=33.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEA-------SGNTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~-------~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
....+|.+|+..|.+.++.-....++...+......+....+ .+..+|.+++-.=.+...+-..+|++--.|+
T Consensus 104 ~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 444555555555555444444444444444444333332222 2333333333222222234445555555666
Q ss_pred HHHH
Q 005753 599 SQLL 602 (679)
Q Consensus 599 ~~l~ 602 (679)
++.+
T Consensus 184 KqVs 187 (772)
T KOG0999|consen 184 KQVS 187 (772)
T ss_pred HHHH
Confidence 6654
No 128
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.00 E-value=9.3 Score=47.53 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQ 578 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k 578 (679)
-..+.++++++..++...+....++.+++.
T Consensus 622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 622 SEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555555555555555444444443
No 129
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.93 E-value=13 Score=38.52 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=20.0
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 563 KRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 563 ~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
...+..+...+.+.....+.......+++..|..|+.+|..
T Consensus 175 e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 175 EEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444445555566666666665553
No 130
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.89 E-value=24 Score=41.57 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHhhhhcccch
Q 005753 572 EIFKLRQMLEDEAHQKKKLEEEIALLQSQLL-QISFEADEVRCIQNFFACC 621 (679)
Q Consensus 572 ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~~~~~~~~~~~ 621 (679)
=.....++|.++..++++++.+-..+.++|. ...++-...-.|+++-+-.
T Consensus 996 YflqRhqlL~rHekE~eQmqrynQr~ie~Lk~rqtqerarLPKiqRSE~KT 1046 (1187)
T KOG0579|consen 996 YFLQRHQLLARHEKEMEQMQRYNQREIEDLKRRQTQERARLPKIQRSETKT 1046 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHH
Confidence 3445567888888999999999888888887 3355555445566655443
No 131
>PRK06893 DNA replication initiation factor; Validated
Probab=92.89 E-value=0.092 Score=53.94 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=32.2
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..++||..++.. +..- +..+...+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~-~~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADN-NLLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCC-hHHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 468899988654 2221 222233344578888999999999999998
No 132
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.87 E-value=22 Score=46.01 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALL 597 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L 597 (679)
.++..+...+++++.+......+|..+++.+.+....+..+.+++..+
T Consensus 977 ~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 977 TELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666667777777777777666666666666666
No 133
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.76 E-value=10 Score=44.05 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=35.9
Q ss_pred hhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005753 526 SIVGELTEVKK-LLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLE 581 (679)
Q Consensus 526 ~~~~~i~~l~~-~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~ 581 (679)
..+..++++.+ ...+-.+.+-++|..++.-+..+..++...+..+++++.+...+.
T Consensus 206 ~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv 262 (861)
T KOG1899|consen 206 LSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLV 262 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHH
Confidence 33344444443 333344455667777777777778888888888888888776665
No 134
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.68 E-value=0.17 Score=57.34 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=25.5
Q ss_pred HHHHHHhcCcceEEEeeccCCCCcccccc
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm~ 161 (679)
..+..++..-++.|+.-|+||||||.||+
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 34667788899999999999999999995
No 135
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=92.54 E-value=26 Score=41.04 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005753 420 YKSLARRLDIQLDKLIAEHER 440 (679)
Q Consensus 420 ~~~l~~~l~~e~~~L~~e~e~ 440 (679)
+..++......+..|..++..
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~ 269 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAE 269 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544443
No 136
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.52 E-value=21 Score=40.01 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=9.8
Q ss_pred ccccceeccccCc
Q 005753 650 HATGLLLHNVGSR 662 (679)
Q Consensus 650 ~~~~~~~~~~~~~ 662 (679)
-.+|-++|..|..
T Consensus 302 PV~G~il~rFG~~ 314 (420)
T COG4942 302 PVTGRILRRFGQA 314 (420)
T ss_pred CCCCcHHHHhccc
Confidence 3688888888864
No 137
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=92.42 E-value=20 Score=39.46 Aligned_cols=72 Identities=17% Similarity=0.407 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 005753 430 QLDKLIAEHERQQKAFENEIERITIEAQ----NQISETERNYADALEKERLK----------YQKDYMESIKKLEERWKI 495 (679)
Q Consensus 430 e~~~L~~e~e~~~~~~~~e~~~~~~e~~----~~l~e~e~~~~~~le~e~~~----------~~~~~~~~i~~le~~l~~ 495 (679)
.+..|..+.++....+..|.+.+..+.- .-|..+...+.+.++.+..+ ++++|.++++.++..|..
T Consensus 353 kiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeV 432 (593)
T KOG4807|consen 353 KIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEV 432 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHH
Confidence 3444544444444445555444433322 22334444445555544433 346788888888888876
Q ss_pred HHhhhc
Q 005753 496 NQQKQG 501 (679)
Q Consensus 496 ~~~~~~ 501 (679)
.-.+.+
T Consensus 433 LSEQYS 438 (593)
T KOG4807|consen 433 LSEQYS 438 (593)
T ss_pred HHHHHH
Confidence 655543
No 138
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.39 E-value=4.2 Score=45.38 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 572 EIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 572 ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
-..+++++-+.+.+...+.++.|.-|++||--+
T Consensus 415 w~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 415 WRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444455555566667777888888888887644
No 139
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.39 E-value=0.077 Score=56.45 Aligned_cols=30 Identities=33% Similarity=0.624 Sum_probs=27.4
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 131 AKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 131 ~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|++..+.+--++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 457788888999999999999999999998
No 140
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.33 E-value=21 Score=46.13 Aligned_cols=10 Identities=0% Similarity=0.033 Sum_probs=5.1
Q ss_pred CCChHHhHHH
Q 005753 389 PRHRGETAST 398 (679)
Q Consensus 389 ~~~~~ETlsT 398 (679)
..+|++.|..
T Consensus 634 ~~~~~~~L~~ 643 (1311)
T TIGR00606 634 SQDEESDLER 643 (1311)
T ss_pred chhHHHHHHH
Confidence 3455555543
No 141
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.31 E-value=7.2 Score=46.66 Aligned_cols=78 Identities=29% Similarity=0.218 Sum_probs=41.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhchHHHHHHHHHHHHHHH----HHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVA----------QWKRSEASGNTEIFKLRQMLEDEAH----QKKK 589 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~----------~~~~~~~~~~~ei~~l~k~l~~~~~----~~~~ 589 (679)
...+..+|.+++.+=.+..+-...+|++--.|+.++. .++-++..+.+++.-++.++++... ...+
T Consensus 78 ~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~q 157 (717)
T PF09730_consen 78 RKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQ 157 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556555544444455555666555555554 3344455555555555555555433 2335
Q ss_pred HHHHHHHHHHHH
Q 005753 590 LEEEIALLQSQL 601 (679)
Q Consensus 590 ~~~~i~~L~~~l 601 (679)
+++....|+.+-
T Consensus 158 leEALesl~~ER 169 (717)
T PF09730_consen 158 LEEALESLKSER 169 (717)
T ss_pred HHHHHHHHHHHH
Confidence 566666665553
No 142
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.21 E-value=17 Score=38.22 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 005753 573 IFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVR 612 (679)
Q Consensus 573 i~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~ 612 (679)
-..+++++...++.+..++++|..|+.+..++..++..-|
T Consensus 188 N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 188 NQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPR 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 3345566777777778888888888888777666655433
No 143
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.93 E-value=6.1 Score=37.21 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 005753 482 YMESIKKLEERWK 494 (679)
Q Consensus 482 ~~~~i~~le~~l~ 494 (679)
|...+..+.+++.
T Consensus 22 ~~~~~~~~~~dl~ 34 (132)
T PF07926_consen 22 AEEQLQSLREDLE 34 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 144
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.91 E-value=27 Score=45.81 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 005753 483 MESIKKLEERWK 494 (679)
Q Consensus 483 ~~~i~~le~~l~ 494 (679)
+.++..|+..+.
T Consensus 871 e~k~~eL~k~l~ 882 (1822)
T KOG4674|consen 871 EIKLSELEKRLK 882 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 145
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.89 E-value=20 Score=38.33 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=27.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEE 592 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~ 592 (679)
...++|.+|++.|+.-+.-. ..-..+.+|.++.+++........++|.++-.+....-+++.++-.
T Consensus 135 ~lvq~I~~L~k~le~~~k~~-e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~ 200 (294)
T COG1340 135 ELVQKIKELRKELEDAKKAL-EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFE 200 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444322111 1123344444444444444444444444444444433333333333
No 146
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.79 E-value=8.8 Score=43.57 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=48.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLR 577 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~ 577 (679)
+++....-+..++.+-|+...+...+++.+++++++|+.+++.++...+++|..++
T Consensus 247 kk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 247 KKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35556666677888888888899999999999999999999999999999999988
No 147
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.71 E-value=24 Score=38.90 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 005753 588 KKLEEEIALLQSQLLQ 603 (679)
Q Consensus 588 ~~~~~~i~~L~~~l~~ 603 (679)
...+.++..++.++..
T Consensus 249 ~~~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 249 TEAQARLAELRERLNK 264 (423)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 148
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.70 E-value=4.8 Score=49.50 Aligned_cols=105 Identities=20% Similarity=0.225 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH-------HHHH
Q 005753 478 YQKDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRK-------AAEE 550 (679)
Q Consensus 478 ~~~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~-------~~E~ 550 (679)
+-++|-.+|..|..++.+.+.+...-.. .+.....+.+-......+++++.++..+++.+........ .+-+
T Consensus 405 llKd~~~EIerLK~dl~AaReKnGvyis-ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 405 LLKDLYEEIERLKRDLAAAREKNGVYIS-EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhCceEec-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3467888899999998888777653222 1111001111112223455666666666665555444443 3444
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
+...+++++.+...+++..++++.+.+..|.++
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555556655555554433
No 149
>PRK11281 hypothetical protein; Provisional
Probab=91.69 E-value=14 Score=46.73 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=55.2
Q ss_pred hhhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKE--------TQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIA 595 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~--------~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~ 595 (679)
+.+...+++++++++..- ..++..++.|...++.+.+-.+.++..++.-.+=++.+.+....+...++.++.
T Consensus 165 lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~ 244 (1113)
T PRK11281 165 LYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQ 244 (1113)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666655441 244566677777788888888888888877777777777777777777888887
Q ss_pred HHHHHHHh
Q 005753 596 LLQSQLLQ 603 (679)
Q Consensus 596 ~L~~~l~~ 603 (679)
.|+..+.+
T Consensus 245 ~lq~~in~ 252 (1113)
T PRK11281 245 LLQEAINS 252 (1113)
T ss_pred HHHHHHHH
Confidence 77776553
No 150
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.65 E-value=25 Score=42.62 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=65.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---hHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 521 KDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASG---NTE-IFKLRQMLEDEAHQKKKLEEEIAL 596 (679)
Q Consensus 521 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~---~~e-i~~l~k~l~~~~~~~~~~~~~i~~ 596 (679)
+..+..+..++..|+..|++++.....++..+.+|+.++.-........ +.+ -.+..++|..+..-.+.|.+-|..
T Consensus 672 e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~s 751 (769)
T PF05911_consen 672 EAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIAS 751 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999999999999988655433211 222 223345888888899999999999
Q ss_pred HHHHHHhh
Q 005753 597 LQSQLLQI 604 (679)
Q Consensus 597 L~~~l~~~ 604 (679)
|-+||..+
T Consensus 752 LGkQLksL 759 (769)
T PF05911_consen 752 LGKQLKSL 759 (769)
T ss_pred HHHHHHhc
Confidence 99999854
No 151
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.49 E-value=9.4 Score=39.91 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 533 EVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
.|+....+....+..++.++.++..++..+.........+...++..+...
T Consensus 65 rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444444444444
No 152
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.48 E-value=17 Score=36.58 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=20.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQW 562 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~ 562 (679)
+..++...+.-++..|+....+....|..+.+|...+..+
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~ 121 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRIL 121 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555555555554444433
No 153
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.38 E-value=4.2 Score=42.12 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 533 EVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
+|+++.+...+.+..+.++|+.....+..++........+-.+.+..+....++...+.++|..+..+
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444444444444444444444444444444444
No 154
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.37 E-value=39 Score=40.57 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=6.8
Q ss_pred hhhhhhHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKE 541 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~ 541 (679)
++-+..+.+++..|+.+
T Consensus 287 SqkeelVk~~qeeLd~l 303 (1265)
T KOG0976|consen 287 SQKEELVKELQEELDTL 303 (1265)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 155
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.34 E-value=24 Score=42.16 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005753 579 MLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 579 ~l~~~~~~~~~~~~~i~~L~~ 599 (679)
.+++..++++.++....++..
T Consensus 188 kl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 188 KLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 156
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.26 E-value=38 Score=40.22 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQMLE 581 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l~ 581 (679)
.+|+.++.++....-.++.+-.++...|.
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq 191 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQ 191 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHH
Confidence 45555555555544444444333333333
No 157
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.24 E-value=38 Score=40.16 Aligned_cols=6 Identities=17% Similarity=0.456 Sum_probs=2.4
Q ss_pred HHHHhc
Q 005753 347 CINSLA 352 (679)
Q Consensus 347 vI~aL~ 352 (679)
|+++++
T Consensus 10 ~~~a~~ 15 (716)
T KOG4593|consen 10 VLSALR 15 (716)
T ss_pred HHHHhh
Confidence 334443
No 158
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.24 E-value=34 Score=39.71 Aligned_cols=38 Identities=34% Similarity=0.401 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 572 EIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 572 ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
++...+.+|+.......+..+....|...|.++..+++
T Consensus 345 eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae 382 (522)
T PF05701_consen 345 ELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAE 382 (522)
T ss_pred HHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444444
No 159
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.06 E-value=8.8 Score=40.16 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 542 TQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 542 ~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
..+...++.....|+.+-.....+...+..++.++...+.....+...-+.+...|+.+|..+..+-+
T Consensus 53 e~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 53 EQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777778888888888888888888888899999999998876655444
No 160
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.05 E-value=3.5 Score=39.51 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 005753 576 LRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEV 611 (679)
Q Consensus 576 l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~ 611 (679)
+.+.+....++....+.........|.+++.-|+.+
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~ 113 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHF 113 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444444444444444444444444444555555543
No 161
>PRK12704 phosphodiesterase; Provisional
Probab=91.04 E-value=21 Score=41.52 Aligned_cols=7 Identities=43% Similarity=0.373 Sum_probs=3.1
Q ss_pred hhhhhhH
Q 005753 603 QISFEAD 609 (679)
Q Consensus 603 ~~~~~~~ 609 (679)
++..+++
T Consensus 181 ~~~~~a~ 187 (520)
T PRK12704 181 EAKEEAD 187 (520)
T ss_pred HHHHHHH
Confidence 4444444
No 162
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.98 E-value=24 Score=41.35 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 005753 587 KKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 587 ~~~~~~~i~~L~~~l~~~ 604 (679)
.....++|..|..+|.+.
T Consensus 446 ~~~~~~~i~~l~~~L~~~ 463 (560)
T PF06160_consen 446 FFDVSDEIEELSDELNQV 463 (560)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 334444444444444433
No 163
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.87 E-value=26 Score=40.60 Aligned_cols=7 Identities=43% Similarity=0.373 Sum_probs=3.1
Q ss_pred hhhhhhH
Q 005753 603 QISFEAD 609 (679)
Q Consensus 603 ~~~~~~~ 609 (679)
++...|+
T Consensus 175 ~~~~~a~ 181 (514)
T TIGR03319 175 EAKEEAD 181 (514)
T ss_pred HHHHHHH
Confidence 4444444
No 164
>PRK06620 hypothetical protein; Validated
Probab=90.78 E-value=0.18 Score=51.51 Aligned_cols=48 Identities=27% Similarity=0.422 Sum_probs=33.3
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcc---eEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYN---GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N---~tIfaYGqTgSGKTyTm 160 (679)
..|+||..+.. .++...|..+.. +.+ .. |+| -.++-||++||||||.+
T Consensus 11 ~~~tfd~Fvvg-~~N~~a~~~~~~-~~~-~~-~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 11 SKYHPDEFIVS-SSNDQAYNIIKN-WQC-GF-GVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCchhhEec-ccHHHHHHHHHH-HHH-cc-ccCCCcceEEEECCCCCCHHHHH
Confidence 46899987765 445667776533 222 11 444 45899999999999998
No 165
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.67 E-value=21 Score=36.37 Aligned_cols=46 Identities=17% Similarity=0.409 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 005753 423 LARRLDIQLDKLIAEHERQQKAFENEIERIT---IEAQNQISETERNYA 468 (679)
Q Consensus 423 l~~~l~~e~~~L~~e~e~~~~~~~~e~~~~~---~e~~~~l~e~e~~~~ 468 (679)
++..++.-+..++.+.+++......++..+. ..+...+..++..|.
T Consensus 45 i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 45 IMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 3344444444444444444333333333332 222334444444444
No 166
>PF14992 TMCO5: TMCO5 family
Probab=90.63 E-value=21 Score=37.89 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
.+.+.+..++.....-...|+++.++.+.+.+...-++.....+.++++.|...
T Consensus 110 ~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rm 163 (280)
T PF14992_consen 110 SLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRM 163 (280)
T ss_pred ccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666667788888888888887777787888888888777443
No 167
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.59 E-value=21 Score=36.08 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 573 IFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 573 i~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
+..-.+.......+...+.++|..|...|.+
T Consensus 159 l~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 159 LASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444555555555555555543
No 168
>PRK01156 chromosome segregation protein; Provisional
Probab=90.53 E-value=53 Score=40.63 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.6
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4578999999999875
No 169
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.47 E-value=45 Score=39.76 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=14.0
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
+++-+|..|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5668899999999887
No 170
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.45 E-value=17 Score=43.80 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=19.1
Q ss_pred CcceeeecCCCCC-eec---CCcEEEEecChhHHHHHHHh
Q 005753 213 DNISIAEDPKTGD-VSL---PGVTLVEIRDQHSFVELLKL 248 (679)
Q Consensus 213 ~~l~i~ed~~~G~-v~v---~glt~~~V~s~ee~~~lL~~ 248 (679)
.++.+..||..-. +|+ .|++.+.+.=...+.+++..
T Consensus 367 cpI~L~~Dp~~~~ryy~~H~~GvH~V~L~wl~~L~~fl~~ 406 (717)
T PF10168_consen 367 CPIRLHRDPLNPDRYYCYHNAGVHSVTLPWLSALQEFLES 406 (717)
T ss_pred cceEEEecCCCCceEEEEecCccEEEEeccHHHHHHHhcc
Confidence 4566777765422 222 47777777544444444443
No 171
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.44 E-value=17 Score=42.98 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLE 581 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~ 581 (679)
++++..++.++++.....+.+...++.|+.+++
T Consensus 222 ~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~ 254 (916)
T KOG0249|consen 222 EQELESVKKQLEEMRHDKDKLRTDIEDLRGELD 254 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444444444444444444444444433
No 172
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.37 E-value=31 Score=42.65 Aligned_cols=38 Identities=11% Similarity=-0.038 Sum_probs=27.6
Q ss_pred ccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccc
Q 005753 372 SFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVE 409 (679)
Q Consensus 372 sLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~ 409 (679)
..+|.+.++||-.=.-+...|-+.|..+.+--+|+++-
T Consensus 91 ~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFL 128 (1141)
T KOG0018|consen 91 AINGGTSEYMIDNEIVTREEYLEELEKINILVKARNFL 128 (1141)
T ss_pred hhcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEE
Confidence 34456678888877667777888888888777777653
No 173
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.35 E-value=11 Score=45.54 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
.+..|....+.+..++..+.+.+.+++-.++..+....+..++|..|...|
T Consensus 115 q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 115 QFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555555555555555556666666655
No 174
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.34 E-value=41 Score=39.03 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 005753 588 KKLEEEIALLQSQLLQI 604 (679)
Q Consensus 588 ~~~~~~i~~L~~~l~~~ 604 (679)
.+.+.+..+|++...+.
T Consensus 435 ~~~~~~~~tLq~~~~~~ 451 (581)
T KOG0995|consen 435 HEAENELETLQEHFSNK 451 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444443333
No 175
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.18 E-value=10 Score=37.68 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLR 577 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~ 577 (679)
..+++++.+....+...+++.+++
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 176
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.18 E-value=37 Score=38.28 Aligned_cols=27 Identities=11% Similarity=-0.203 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhhhcc
Q 005753 592 EEIALLQSQLLQISFEADEVRCIQNFF 618 (679)
Q Consensus 592 ~~i~~L~~~l~~~~~~~~~~~~~~~~~ 618 (679)
+.+......+..+..-+++.-...+|+
T Consensus 191 e~~~s~~~~~k~~k~~ae~~~qq~q~~ 217 (438)
T COG4487 191 EQRESKWAILKKLKRRAELGSQQVQGE 217 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333333334444444444443333333
No 177
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=89.97 E-value=23 Score=39.04 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHhh---hh
Q 005753 544 LRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI----SFEADEVRCI---QN 616 (679)
Q Consensus 544 ~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~----~~~~~~~~~~---~~ 616 (679)
++.++.++++.++.+++=+-.......=++..|.+.++.++....+|..+-..|-.-..++ ..+.+..|.+ |.
T Consensus 415 LRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdG 494 (593)
T KOG4807|consen 415 LRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDG 494 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCC
Confidence 4455556666666666655555555666777888888888888888877776665554433 2333334544 34
Q ss_pred cccchhhh
Q 005753 617 FFACCGLV 624 (679)
Q Consensus 617 ~~~~~~~~ 624 (679)
+|..||+.
T Consensus 495 gGtGspla 502 (593)
T KOG4807|consen 495 GGTGSPLA 502 (593)
T ss_pred CCCCCccc
Confidence 66667653
No 178
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=89.95 E-value=27 Score=36.37 Aligned_cols=77 Identities=29% Similarity=0.419 Sum_probs=37.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-----
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEE--------EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKK----- 589 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~--------~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~----- 589 (679)
....+..++.++...++.++..+..-|. ....+..+++ .+.......+..++.+++........
T Consensus 122 ~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~---~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f 198 (247)
T PF06705_consen 122 LNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIE---KEKNTRESKLSELRSELEEVKRRREKGDEQF 198 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3445666666666666665554443332 2233333332 44444455555555555544433222
Q ss_pred ---HHHHHHHHHHHHH
Q 005753 590 ---LEEEIALLQSQLL 602 (679)
Q Consensus 590 ---~~~~i~~L~~~l~ 602 (679)
.-++|..|+..|+
T Consensus 199 ~~~v~~Ei~~lk~~l~ 214 (247)
T PF06705_consen 199 QNFVLEEIAALKNALA 214 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555544
No 179
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.95 E-value=48 Score=39.28 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 005753 458 NQISETERNYADALE 472 (679)
Q Consensus 458 ~~l~e~e~~~~~~le 472 (679)
+.|..++......|.
T Consensus 852 q~iE~~Eq~h~~rlR 866 (1187)
T KOG0579|consen 852 QEIEDTEQAHEHRLR 866 (1187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444333333
No 180
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.78 E-value=7.9 Score=43.30 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 005753 435 IAEHERQQKAFENEI 449 (679)
Q Consensus 435 ~~e~e~~~~~~~~e~ 449 (679)
..+++.|++..++.+
T Consensus 327 ~sqleSqr~y~e~~~ 341 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIM 341 (493)
T ss_pred hhhhhHHHHHHHHHH
Confidence 344555555555443
No 181
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.74 E-value=4.6 Score=43.75 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=52.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
....+..+..++.++|++-....+.+++++..++.+..++..+....-.+...++.++....++..++...+.....+|.
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred hhh
Q 005753 603 QIS 605 (679)
Q Consensus 603 ~~~ 605 (679)
.+.
T Consensus 131 ~L~ 133 (314)
T PF04111_consen 131 RLR 133 (314)
T ss_dssp CHH
T ss_pred HHH
Confidence 443
No 182
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.69 E-value=26 Score=41.88 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=13.6
Q ss_pred hhhhhhhhhhheeecccc
Q 005753 633 FPLFFSCVSILFKISVPH 650 (679)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~ 650 (679)
.|.-.|..+.|-|.-.-|
T Consensus 589 ~p~~tSIMsYLkkLE~~~ 606 (861)
T PF15254_consen 589 APAHTSIMSYLKKLETNH 606 (861)
T ss_pred CCccchHHHHHHhhcccc
Confidence 577788889888876555
No 183
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.64 E-value=34 Score=37.07 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005753 576 LRQMLEDEAHQKKKLEEEIALLQSQLLQISFE 607 (679)
Q Consensus 576 l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~ 607 (679)
--..+...+.+++++...|..|+++-.....-
T Consensus 235 SNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k 266 (309)
T PF09728_consen 235 SNEVFETFKKEMEKMSKKIKKLEKENQTWKSK 266 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455567777777777777775544433
No 184
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.59 E-value=25 Score=35.59 Aligned_cols=41 Identities=20% Similarity=0.125 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005753 542 TQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLED 582 (679)
Q Consensus 542 ~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~ 582 (679)
+.+...+++++..|+-+.+.+.........+-.++....+.
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666655555555555555555555555543
No 185
>PRK12377 putative replication protein; Provisional
Probab=89.58 E-value=0.33 Score=50.78 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=35.7
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..+||........|..++.. +..+++.+..+. ..++-||++|+||||.+
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHH
Confidence 45777765555567767764 466677776654 46889999999999998
No 186
>PRK05642 DNA replication initiation factor; Validated
Probab=89.54 E-value=0.3 Score=50.35 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=29.1
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhc---Cc-ceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLD---GY-NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~---G~-N~tIfaYGqTgSGKTyTm 160 (679)
..|+||.-+.. .+...+. .+....+ ++ +..++-||.+|+||||-+
T Consensus 14 ~~~tfdnF~~~--~~~~a~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYPG--ANAAALG-----YVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCcC--ChHHHHH-----HHHHHhhccccCCCCeEEEECCCCCCHHHHH
Confidence 46899988744 2333333 3333322 22 246899999999999998
No 187
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.50 E-value=47 Score=38.58 Aligned_cols=7 Identities=14% Similarity=0.657 Sum_probs=3.0
Q ss_pred HHHhhhh
Q 005753 610 EVRCIQN 616 (679)
Q Consensus 610 ~~~~~~~ 616 (679)
.++.|+.
T Consensus 436 ~ik~l~e 442 (522)
T PF05701_consen 436 EIKALSE 442 (522)
T ss_pred HHHHhhc
Confidence 3344443
No 188
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.44 E-value=4.2 Score=41.38 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 005753 482 YMESIKKLEERWKIN 496 (679)
Q Consensus 482 ~~~~i~~le~~l~~~ 496 (679)
....+..++.+++..
T Consensus 91 ~~~rlp~le~el~~l 105 (206)
T PRK10884 91 LRTRVPDLENQVKTL 105 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555533
No 189
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.38 E-value=0.33 Score=50.12 Aligned_cols=46 Identities=13% Similarity=0.335 Sum_probs=31.4
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|+||..+.. .+...+..+.. +.. ......++-||++|+||||.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~-~~~---~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQN-ALR---QEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHH-HHh---CCCCCeEEEECCCCCCHHHHH
Confidence 46788876655 56666655422 222 222347899999999999998
No 190
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=27 Score=40.10 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=16.1
Q ss_pred ChHHHHHHhhHHHHHHHhcCcceEEEeecc
Q 005753 122 SQKRVYQAVAKPVVESVLDGYNGTVMAYGQ 151 (679)
Q Consensus 122 sQ~~Vy~~~~~plV~~~l~G~N~tIfaYGq 151 (679)
.-.++|..-+.|. -.|-|.+|+.||.
T Consensus 199 ~~telylqpgepg----RS~tn~Si~sFGe 224 (741)
T KOG4460|consen 199 EPTELYLQPGEPG----RSPTNVSILSFGE 224 (741)
T ss_pred CcchhhccCCCcC----CCCccceeeccCC
Confidence 3355666554442 3678888888873
No 191
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.25 E-value=39 Score=38.65 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=14.0
Q ss_pred CCCceeeeEecCCCCCChHHhHHHH
Q 005753 375 GTARTSLVITIGPSPRHRGETASTI 399 (679)
Q Consensus 375 Gnskt~mI~tIsP~~~~~~ETlsTL 399 (679)
|++..+=|.--+|++.-...-.+++
T Consensus 119 ~~s~vi~Is~~~~dP~~Aa~i~n~l 143 (498)
T TIGR03007 119 GRDNLFTISYEDKDPELAKDVVQTL 143 (498)
T ss_pred CCCCeEEEEeeCCCHHHHHHHHHHH
Confidence 3444444555566666665655554
No 192
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.16 E-value=0.25 Score=57.74 Aligned_cols=49 Identities=31% Similarity=0.489 Sum_probs=33.8
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|+||..+-... +.-.|. .+..+++..-.+||. ||-||.+|+||||-+
T Consensus 283 ~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL 331 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLL 331 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHH
Confidence 4699998665433 444553 334455543356776 899999999999998
No 193
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.97 E-value=26 Score=40.21 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=19.3
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 563 KRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 563 ~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
+..-..+...+.++.+.|....-..++-.+++..++++|..|
T Consensus 365 kehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 365 KEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444344444455555555555544
No 194
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=88.90 E-value=12 Score=34.50 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhhcccc
Q 005753 541 ETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQNFFAC 620 (679)
Q Consensus 541 ~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~~~~~ 620 (679)
...+...++..-..|+.....+..-+..+.+......+..+.+...+.....+|..|..+|..+..+...+...-..|..
T Consensus 30 ~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 30 LKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777888888888999999999999999999999999999999999888887777555566777
Q ss_pred hhhhhHhhhhchhhh
Q 005753 621 CGLVLSLLFFPLFPL 635 (679)
Q Consensus 621 ~~~~~~~~~~~~~~~ 635 (679)
|.-+|-- +.|-.|-
T Consensus 110 Y~~fL~~-v~~~~~e 123 (126)
T PF13863_consen 110 YEEFLEK-VVPKSPE 123 (126)
T ss_pred HHHHHHH-hcccccC
Confidence 7777654 3455554
No 195
>PRK09087 hypothetical protein; Validated
Probab=88.83 E-value=0.28 Score=50.40 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=32.3
Q ss_pred CcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 108 ~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
...|+||..+.... +..+|..+ .....-.|..++-||++||||||-+
T Consensus 15 ~~~~~~~~Fi~~~~-N~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 15 DPAYGRDDLLVTES-NRAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCCChhceeecCc-hHHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHH
Confidence 34688998886533 45577743 3322223556899999999999998
No 196
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.67 E-value=66 Score=39.15 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005753 543 QLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLE 581 (679)
Q Consensus 543 ~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~ 581 (679)
..+...|.++..|..+++..+++...+.-++.-+.|+|+
T Consensus 127 ~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 127 EEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555444
No 197
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.56 E-value=40 Score=37.16 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhh
Q 005753 592 EEIALLQSQLLQI 604 (679)
Q Consensus 592 ~~i~~L~~~l~~~ 604 (679)
+++..++.++..+
T Consensus 246 ~~l~~~~~~l~~~ 258 (423)
T TIGR01843 246 EELTEAQARLAEL 258 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 198
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.54 E-value=0.46 Score=51.77 Aligned_cols=47 Identities=30% Similarity=0.420 Sum_probs=29.7
Q ss_pred eccccCCCCChHHHHHHhhHHHHHHHh-cCcceEEEeeccCCCCccccc
Q 005753 113 FDEVLTEFASQKRVYQAVAKPVVESVL-DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 113 FD~VF~~~asQ~~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKTyTm 160 (679)
-|.+.+.-...++-++.+..- +..++ .+....++-||++|+|||+++
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~-l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKA-LRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHH-HHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 333433344455555555433 34444 345678999999999999987
No 199
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.42 E-value=45 Score=40.36 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHHHHhc
Q 005753 337 INLSLSALGKCINSLA 352 (679)
Q Consensus 337 IN~SL~aLg~vI~aL~ 352 (679)
|=+|=..+.+||..|.
T Consensus 80 iL~Sr~v~~~VV~~L~ 95 (754)
T TIGR01005 80 ILSSNEILKQVVDKLG 95 (754)
T ss_pred HHccHHHHHHHHHHcC
Confidence 3344455555555543
No 200
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.34 E-value=0.5 Score=52.10 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=31.3
Q ss_pred eeeccccCCCCChHHHHHHhhHHHHHHHh-cCcceEEEeeccCCCCccccc
Q 005753 111 YEFDEVLTEFASQKRVYQAVAKPVVESVL-DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 111 F~FD~VF~~~asQ~~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKTyTm 160 (679)
|..|.+.+.-..-++-++.+... +..++ .+....++-||++|+|||+++
T Consensus 23 l~~~~~P~~l~~Re~e~~~l~~~-l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 23 LEPDYVPENLPHREEQIEELAFA-LRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCCcCCCCCCHHHHHHHHHHH-HHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 44444444444555556665444 33444 445567899999999999998
No 201
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.34 E-value=37 Score=35.88 Aligned_cols=49 Identities=16% Similarity=0.043 Sum_probs=24.8
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 561 QWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 561 ~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
+++.....++....++...+......+.+...++..|+++.+.+.-.+.
T Consensus 180 e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~qka~a~a~a~ 228 (265)
T COG3883 180 ELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAAAA 228 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444445555566666666666666554443333
No 202
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.32 E-value=3.6 Score=41.34 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=31.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
.....++..++..+......-..++.++..|+.++.++..++......+..++-++....-+-..+++....|+.+-
T Consensus 98 ~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 98 VELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444455555555555555555555555555555555555555455555555555555543
No 203
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.30 E-value=38 Score=35.95 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 555 LKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 555 l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
....+.+++...-..++....|-.+..+--....++++.|.....--+++.
T Consensus 178 R~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~ 228 (269)
T KOG0811|consen 178 REQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGT 228 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555554444444455555555555554444443
No 204
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.22 E-value=18 Score=35.90 Aligned_cols=32 Identities=34% Similarity=0.427 Sum_probs=13.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 568 SGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 568 ~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
...+.+.+++..+.+.+.+...+.+.+..++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 155 DSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 205
>PRK08116 hypothetical protein; Validated
Probab=88.21 E-value=0.35 Score=51.10 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=35.2
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhc--CcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLD--GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~--G~N~tIfaYGqTgSGKTyTm 160 (679)
..++||... .+..+...|.. +...++.+.+ +.|..++-||.+|+||||.+
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 357888655 34556666654 4566676643 34556999999999999998
No 206
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.14 E-value=6.8 Score=42.21 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=69.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.+.++..++.+++.+..+-|...+++.++-..|.=+++-|+..++.+++.+.++++++.+...+.+.+..++..|..++.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999888888888888888888888888888888887777777777777777777776
Q ss_pred hhh
Q 005753 603 QIS 605 (679)
Q Consensus 603 ~~~ 605 (679)
.+.
T Consensus 158 ~Lr 160 (302)
T PF09738_consen 158 ELR 160 (302)
T ss_pred HHH
Confidence 553
No 207
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=88.12 E-value=64 Score=38.36 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=45.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH----------HHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE----------AHQKKKLEEE 593 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~----------~~~~~~~~~~ 593 (679)
...+.+.+.+++.+...+...-+....+...|+.++.+-..+++.....+..|++.+=+. ..++..+.+.
T Consensus 171 ~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~t 250 (739)
T PF07111_consen 171 AEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLET 250 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHH
Confidence 334444444444444334333344455666777777777777777777777777776211 2344555556
Q ss_pred HHHHHHHHHhh
Q 005753 594 IALLQSQLLQI 604 (679)
Q Consensus 594 i~~L~~~l~~~ 604 (679)
+..|+++-..+
T Consensus 251 Vq~L~edR~~L 261 (739)
T PF07111_consen 251 VQHLQEDRDAL 261 (739)
T ss_pred HHHHHHHHHHH
Confidence 66665554433
No 208
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.10 E-value=0.48 Score=49.41 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=34.2
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
...+||........|..++..+ ...++.+..|+ ..++-||.+|+||||.+
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHH
Confidence 3567777554445666676654 44555554443 36899999999999998
No 209
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.96 E-value=65 Score=38.21 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=52.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
+.+.++..+...|++.+-.+-..-..++-.++.|+.+++.+++- ..++...+++.|+...-..+.+..++..++--.
T Consensus 608 K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~---~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a 684 (786)
T PF05483_consen 608 KNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKK---HEEETDKYQKEIESKSISEEELLGEVEKAKLTA 684 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34455666666677777777777777777777777777655543 456666777777777666667777776666554
Q ss_pred Hhh
Q 005753 602 LQI 604 (679)
Q Consensus 602 ~~~ 604 (679)
.+|
T Consensus 685 ~EA 687 (786)
T PF05483_consen 685 DEA 687 (786)
T ss_pred HHH
Confidence 433
No 210
>PRK00106 hypothetical protein; Provisional
Probab=87.96 E-value=60 Score=37.85 Aligned_cols=8 Identities=13% Similarity=0.127 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 005753 593 EIALLQSQ 600 (679)
Q Consensus 593 ~i~~L~~~ 600 (679)
.|+..+.+
T Consensus 189 ~i~~~e~~ 196 (535)
T PRK00106 189 RIREAERE 196 (535)
T ss_pred HHHHHHHH
Confidence 34444444
No 211
>PRK06526 transposase; Provisional
Probab=87.95 E-value=0.33 Score=50.88 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=29.0
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCcccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~ 161 (679)
.|.|+ +.+..++..+..-...+.++ .+.| |+.||++|+||||.+.
T Consensus 72 ~fd~~--~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 72 EFDFD--HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAI 116 (254)
T ss_pred hccCc--cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHH
Confidence 34444 44555665555544444443 4454 7999999999999984
No 212
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.79 E-value=81 Score=41.06 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=13.2
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.++--|++|||||-+|
T Consensus 26 ~~~~~G~NGsGKS~~l 41 (1353)
T TIGR02680 26 RLLLRGNNGAGKSKVL 41 (1353)
T ss_pred eEEEECCCCCcHHHHH
Confidence 3456799999999987
No 213
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.74 E-value=5.1 Score=46.40 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=11.0
Q ss_pred cchHHHHHHHHHhcccc
Q 005753 171 RGIMVRAMEDILAGVSL 187 (679)
Q Consensus 171 ~GIipra~~~LF~~i~~ 187 (679)
.|.|.++...|=+.+..
T Consensus 163 h~av~~~~reIee~L~~ 179 (652)
T COG2433 163 HGAVKRVVREIEEKLDE 179 (652)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 37777777777655543
No 214
>PRK00106 hypothetical protein; Provisional
Probab=87.74 E-value=62 Score=37.75 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=3.8
Q ss_pred hhhhhhH
Q 005753 603 QISFEAD 609 (679)
Q Consensus 603 ~~~~~~~ 609 (679)
++..+|+
T Consensus 196 ~a~~~a~ 202 (535)
T PRK00106 196 EVKDRSD 202 (535)
T ss_pred HHHHHHH
Confidence 5555555
No 215
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=87.61 E-value=59 Score=37.37 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 481 DYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEV-KKLLLKETQLRKAAEEEVNNLKIQV 559 (679)
Q Consensus 481 ~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~~l~~~~~~~~~~E~~~~~l~~~~ 559 (679)
.....++.|..++......++..+.++.. ++.+...++..- +..+++..+.+...+..+.++++++
T Consensus 355 ~l~~~lkDLd~~~~aLs~rld~qEqtL~~-------------rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKV 421 (531)
T PF15450_consen 355 ELMRQLKDLDDHILALSWRLDLQEQTLNL-------------RLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKV 421 (531)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666555555555443322 333333344333 3355667777788888899999999
Q ss_pred HHHHHHHhhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 005753 560 AQWKRSEASGNTEIFKLRQMLE-DEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 560 ~~~~~~~~~~~~ei~~l~k~l~-~~~~~~~~~~~~i~~L~~~l~ 602 (679)
+++...++...+...-.+..++ ....+.+..+-+|..+..+|+
T Consensus 422 d~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa 465 (531)
T PF15450_consen 422 DSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELA 465 (531)
T ss_pred HhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 9998888888887777776665 222334444445555555554
No 216
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.61 E-value=0.45 Score=53.00 Aligned_cols=50 Identities=32% Similarity=0.443 Sum_probs=31.6
Q ss_pred CcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 108 ~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
...|+||.... ...+...|..+ ..+.+.--..+| .++-||++|+||||.+
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 35789998543 24555566543 333433111244 4788999999999998
No 217
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.56 E-value=0.43 Score=54.01 Aligned_cols=49 Identities=29% Similarity=0.493 Sum_probs=33.8
Q ss_pred CcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 108 ~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
...|+||..... .+++..|..+ ..+.+. -..||. +|-||++|+||||.|
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCCcccccccC-CchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 357999987754 4566666654 333332 123675 999999999999998
No 218
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.56 E-value=45 Score=42.25 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
+.+...++.++..++.++...+.-.+=++.+.+....+...++.++..|+..
T Consensus 179 qae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~ 230 (1109)
T PRK10929 179 QAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQ 230 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444443
No 219
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.51 E-value=40 Score=42.10 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=33.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEE-------EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIAL 596 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~-------~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~ 596 (679)
+......+...++.|.+.+......|. .+.+|...+++++.....+..+-.+..+....++.+-...+.....
T Consensus 1586 i~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~ 1665 (1758)
T KOG0994|consen 1586 IQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEI 1665 (1758)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555554444444443 3333444444444444444444444444444443333333333444
Q ss_pred HHHHH
Q 005753 597 LQSQL 601 (679)
Q Consensus 597 L~~~l 601 (679)
|.+.+
T Consensus 1666 lq~~~ 1670 (1758)
T KOG0994|consen 1666 LQKYY 1670 (1758)
T ss_pred HHHHH
Confidence 44443
No 220
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.45 E-value=46 Score=35.90 Aligned_cols=78 Identities=6% Similarity=0.067 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhhcccchhhhhHhhh
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQNFFACCGLVLSLLF 629 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (679)
.++.+|+..+.++.+..-.++..++..-.++++.........+++.+=..++..|-...-..|+ -+||.+++++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK----~k~i~ii~~iii 281 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARK----WKIIIIIILIII 281 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ceeeeehHHHHH
Confidence 4567888888888888888889999999999999999999999998888887766544444443 345555555444
Q ss_pred hc
Q 005753 630 FP 631 (679)
Q Consensus 630 ~~ 631 (679)
+-
T Consensus 282 ~~ 283 (297)
T KOG0810|consen 282 IV 283 (297)
T ss_pred HH
Confidence 43
No 221
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.45 E-value=36 Score=34.74 Aligned_cols=72 Identities=25% Similarity=0.300 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 528 VGELTEVKKLLLKETQLRKAA----EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 528 ~~~i~~l~~~l~~~~~~~~~~----E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
.+.+.++..++.++.++..++ +..++.-..+++ .......+++..|+-.|..+ +-.+..|+++|.+
T Consensus 117 kk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~---~v~~~~~~e~~aLqa~lkk~-------e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 117 KKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIA---QVRSKHQAELLALQASLKKE-------EMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 344555555555555444433 333333333333 33334445555555555444 4555555555555
Q ss_pred hhhhhH
Q 005753 604 ISFEAD 609 (679)
Q Consensus 604 ~~~~~~ 609 (679)
-..+.+
T Consensus 187 K~kEn~ 192 (207)
T PF05010_consen 187 KTKENE 192 (207)
T ss_pred HHHHHH
Confidence 544433
No 222
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.39 E-value=8.6 Score=41.67 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=47.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
.....++..++++-....+.-..+|++..++..++.+++.+.+.++++..+.-+.......+.....++...++.++..+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444444455555555555555555555555555555555555555556666666666666666555
Q ss_pred hhhhH
Q 005753 605 SFEAD 609 (679)
Q Consensus 605 ~~~~~ 609 (679)
...-+
T Consensus 126 ~~~L~ 130 (314)
T PF04111_consen 126 SNQLD 130 (314)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 223
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.38 E-value=15 Score=35.22 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
++.+++..+.....+..+++..+..+...+...+.++......+...+.+ ..+++++-+-+|..|+.+|.
T Consensus 81 ~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq---~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 81 QLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQ---YEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444444444444444444444444444444443333 23567777788888888764
No 224
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.37 E-value=52 Score=36.44 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
++++..+.....+...........|..+-.++..-.+++.+-+.....||-+
T Consensus 216 ~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~ 267 (499)
T COG4372 216 TEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETA 267 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333333333333333333
No 225
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=87.37 E-value=17 Score=38.52 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Q 005753 531 LTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKK-------------KLEEEIALL 597 (679)
Q Consensus 531 i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~-------------~~~~~i~~L 597 (679)
-..|..+|...++.-..+..++.++++++.+......+.++.+.+...+++..+++++ ++...|+.|
T Consensus 268 EK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKL 347 (384)
T KOG0972|consen 268 EKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKL 347 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHH
Confidence 3345556666666667777788888889988888888888888888877776665543 567788888
Q ss_pred HHHHHhhhhh
Q 005753 598 QSQLLQISFE 607 (679)
Q Consensus 598 ~~~l~~~~~~ 607 (679)
+.++++.+..
T Consensus 348 k~et~~mnv~ 357 (384)
T KOG0972|consen 348 KEETQTMNVQ 357 (384)
T ss_pred HHHHHhhhhh
Confidence 8887766543
No 226
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.35 E-value=35 Score=34.46 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQM 579 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~ 579 (679)
+|..+++.+...++.....|..|.+.
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 227
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.33 E-value=72 Score=39.47 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 005753 542 TQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQK 587 (679)
Q Consensus 542 ~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~ 587 (679)
.......++++.++..+++.++...+..++.|.+.+++|.+.+.+.
T Consensus 310 ~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 310 FEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333455677888888888888888888888999888888776543
No 228
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.29 E-value=8.8 Score=44.54 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=8.9
Q ss_pred CceeeeEe-cCCCC
Q 005753 377 ARTSLVIT-IGPSP 389 (679)
Q Consensus 377 skt~mI~t-IsP~~ 389 (679)
++-++|+| |+|.+
T Consensus 288 G~PvvVAtDVtp~P 301 (652)
T COG2433 288 GKPVVVATDVTPAP 301 (652)
T ss_pred CCceEEEccCCCCh
Confidence 35567777 78877
No 229
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=87.12 E-value=20 Score=35.88 Aligned_cols=59 Identities=20% Similarity=0.154 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKK 588 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~ 588 (679)
.+.+.-.+|+.++++-..+++-..-|++++++.....+.+..+|.++...++..+.+..
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888999999998888999999999888888888888887777766544433
No 230
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.10 E-value=6 Score=40.32 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 529 GELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
....+++.+++..+..+.+ |..++.+++.+++..++.++.++.+.....+...++..+...|+.++.++.
T Consensus 135 e~~ee~kekl~E~~~Ekee-------L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 135 EDYEELKEKLEELQKEKEE-------LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3333445444444444443 444444444455555555556666655555555666666666666665553
No 231
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.09 E-value=0.48 Score=53.67 Aligned_cols=50 Identities=32% Similarity=0.472 Sum_probs=31.9
Q ss_pred CcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 108 ~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
...|+||..... ..+...|..+ ..+.+.--..|| .+|-||++|+||||.+
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCCcccccccC-CCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 357899985433 3555566543 333333212345 4788999999999998
No 232
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=87.01 E-value=50 Score=35.93 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=12.1
Q ss_pred HhhhhHHHHHHHHHHhccC
Q 005753 336 SINLSLSALGKCINSLAEG 354 (679)
Q Consensus 336 ~IN~SL~aLg~vI~aL~~~ 354 (679)
+||--+.+|.+-...|.++
T Consensus 56 NinDP~~ALqRDf~~l~Ek 74 (561)
T KOG1103|consen 56 NINDPFAALQRDFAILGEK 74 (561)
T ss_pred ccCChHHHHHHHHHHHhcc
Confidence 4666677777766666553
No 233
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.78 E-value=0.59 Score=47.11 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=31.9
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|+||....+ .+..+++.+- .++ ..+....|+-||++|+||||..
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~-~~~---~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALR-QLA---AGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHH-HHH---hcCCCCeEEEECCCCCCHHHHH
Confidence 35788877632 4555665442 222 2566778999999999999998
No 234
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.76 E-value=51 Score=35.76 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
+++.+...++......++..+.++.++...++....++..+.++|..+++.+.
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444445555555555555555555555555444
No 235
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=86.48 E-value=0.52 Score=45.17 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=23.3
Q ss_pred hHHHHHHhhHHHHHHHhcC-cceEEEeeccCCCCcccccc
Q 005753 123 QKRVYQAVAKPVVESVLDG-YNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 123 Q~~Vy~~~~~plV~~~l~G-~N~tIfaYGqTgSGKTyTm~ 161 (679)
|.++...+ ++.+-.+ .+..++..++||||||++|.
T Consensus 8 Q~~ai~~i----~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 8 QQEAIARI----INSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp HHHHHHHH----HHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHH----HHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 55555544 3333343 46667778899999999993
No 236
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.09 E-value=56 Score=35.55 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhh
Q 005753 534 VKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAH-------QKKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 534 l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~-------~~~~~~~~i~~L~~~l~~~~~ 606 (679)
|-.+|++.+....++|..++.+-.+.+++..+.+.+..+...|-.+|.-... +...+=.|.+-|+++|.++..
T Consensus 131 lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qe 210 (319)
T PF09789_consen 131 LVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQE 210 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666777777777777777777888887888887777763322 233444444444444444444
Q ss_pred hhH
Q 005753 607 EAD 609 (679)
Q Consensus 607 ~~~ 609 (679)
+.+
T Consensus 211 E~~ 213 (319)
T PF09789_consen 211 EKE 213 (319)
T ss_pred HHH
Confidence 444
No 237
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.05 E-value=89 Score=37.84 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=5.1
Q ss_pred CCCCcccc
Q 005753 354 GSAYVPVR 361 (679)
Q Consensus 354 ~~~~VPyR 361 (679)
.+.+|||=
T Consensus 522 ~~s~iq~L 529 (970)
T KOG0946|consen 522 ESSIIQYL 529 (970)
T ss_pred cccHHHHH
Confidence 45677773
No 238
>PF14992 TMCO5: TMCO5 family
Probab=86.04 E-value=50 Score=35.18 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 578 QMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 578 k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
..-++.....+++.+.+++++.+..
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE 168 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKE 168 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455554544444433
No 239
>PRK08939 primosomal protein DnaI; Reviewed
Probab=85.81 E-value=0.57 Score=50.47 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=33.7
Q ss_pred eeeccccCCCCChHHHHHHhhHHHHHHHhcC-cceEEEeeccCCCCcccccc
Q 005753 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDG-YNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 111 F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G-~N~tIfaYGqTgSGKTyTm~ 161 (679)
.+||.+-.....+..++..+ ...++....| ..-.++-||++|+||||-+.
T Consensus 124 atf~~~~~~~~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCChHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 45555433334667777743 5666665543 33469999999999999994
No 240
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=85.77 E-value=76 Score=41.87 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
..+++.+.-....+.....++++.+..++ ...+....+|..|+.++.
T Consensus 929 ~~yqe~~~s~eqsl~~~ks~lde~~~~~e---a~ie~~~~k~tslE~~ls 975 (1822)
T KOG4674|consen 929 REYQEEYSSLEQSLESVKSELDETRLELE---AKIESLHKKITSLEEELS 975 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444443332 233344444455554443
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.68 E-value=0.43 Score=51.98 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=25.6
Q ss_pred HHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 124 KRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 124 ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..+++. +...++.+-.+. -.++-||++|+||||.+
T Consensus 166 ~~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 166 EKILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 344443 355777776554 56999999999999987
No 242
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.51 E-value=95 Score=37.65 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=6.0
Q ss_pred CCeEEEEecCCC
Q 005753 64 GRVRVAVRLRTR 75 (679)
Q Consensus 64 ~~VrV~vRvRP~ 75 (679)
|...+.||.-|.
T Consensus 125 g~~~i~Crt~~v 136 (717)
T PF10168_consen 125 GKKEINCRTVPV 136 (717)
T ss_pred CCcceeEEEEEe
Confidence 344555555554
No 243
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.50 E-value=0.58 Score=53.14 Aligned_cols=48 Identities=27% Similarity=0.454 Sum_probs=31.5
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|+||...... +++..|.. +..++..-=..|| .+|-||.+|+||||.|
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 58999876543 45566643 3444432111245 4889999999999998
No 244
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.41 E-value=13 Score=35.50 Aligned_cols=73 Identities=10% Similarity=0.242 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
=|..|-...++.+..+..+...+..+......+....+.+.+.+..+++++.........+...+..++..+.
T Consensus 39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 39 CIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555555555555555555555555444444444444444444443
No 245
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.30 E-value=73 Score=36.15 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=13.8
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 559 VAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 559 ~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
++-++.+.+....++..|+.++...
T Consensus 480 LdlLkrEKe~~EqefLslqeEfQk~ 504 (527)
T PF15066_consen 480 LDLLKREKETREQEFLSLQEEFQKH 504 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666655543
No 246
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.25 E-value=30 Score=38.27 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhh
Q 005753 546 KAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEA------HQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 546 ~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~------~~~~~~~~~i~~L~~~l~~~~ 605 (679)
...+++.+.....+.+...++....+++++.++++++.- .-.-++...|.+|+.++.+.+
T Consensus 283 s~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 283 SEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444555555555555555555555555331 123355555666666554443
No 247
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.11 E-value=15 Score=36.95 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=30.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 005753 560 AQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEV 611 (679)
Q Consensus 560 ~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~ 611 (679)
.++......+...|.+++.+.+.....++....+|.+|+.....+.++.+.+
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555566666677777777666555555443
No 248
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=85.10 E-value=0.27 Score=59.07 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 005753 527 IVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTE 572 (679)
Q Consensus 527 ~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~e 572 (679)
+..++.+++..+.........++.++..++.+++.+...+......
T Consensus 169 l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~ 214 (722)
T PF05557_consen 169 LKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQ 214 (722)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333333333444444444444444444444333333
No 249
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.03 E-value=25 Score=38.95 Aligned_cols=6 Identities=17% Similarity=0.711 Sum_probs=2.9
Q ss_pred Cccccc
Q 005753 155 GKTYTL 160 (679)
Q Consensus 155 GKTyTm 160 (679)
|+.|-.
T Consensus 57 g~~f~~ 62 (359)
T PF10498_consen 57 GRKFEQ 62 (359)
T ss_pred CCCCCC
Confidence 455554
No 250
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=85.03 E-value=0.75 Score=41.58 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=18.8
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
...+.......++.+|++|+|||+++
T Consensus 11 ~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 11 REALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 33333434557889999999999876
No 251
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.01 E-value=1.4 Score=53.47 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=17.9
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|-+.++|.||++|+|||.|+
T Consensus 778 sgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 455567899999999999998
No 252
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=84.99 E-value=4.6 Score=46.15 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 546 KAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 546 ~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
+.--.|+.+|+.+-.++..+.++.+..|+++++.|..++.+..+++.+|++-+.++.++
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 33345566666666667777777777777777777777777777777777777776655
No 253
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=84.82 E-value=53 Score=34.16 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 527 IVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEAS--------GNTEIFKLRQMLEDEAHQKKKLEEEIA 595 (679)
Q Consensus 527 ~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~--------~~~ei~~l~k~l~~~~~~~~~~~~~i~ 595 (679)
+......++..+.+++..+ |..+..|...++++...... .-+||..++.-|+.+..+++.-.+.|.
T Consensus 155 l~e~~~~l~~~i~~Ek~~R---e~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv 228 (247)
T PF06705_consen 155 LEEEENRLQEKIEKEKNTR---ESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIV 228 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3333444444444444333 34444455555544433322 345777777777777776666555554
No 254
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.62 E-value=18 Score=37.68 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=9.2
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHH
Q 005753 560 AQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 560 ~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
.+++...+..++++.+++++++..
T Consensus 73 ~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 73 EQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334443333333
No 255
>PRK08181 transposase; Validated
Probab=84.50 E-value=1 Score=47.71 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=26.1
Q ss_pred ccccCCCCChHHHHHHhhH-HHHHHHhcCcceEEEeeccCCCCcccccc
Q 005753 114 DEVLTEFASQKRVYQAVAK-PVVESVLDGYNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 114 D~VF~~~asQ~~Vy~~~~~-plV~~~l~G~N~tIfaYGqTgSGKTyTm~ 161 (679)
|.-+.+..+...+..-... ..++ .|.| |+-||++|+||||-+.
T Consensus 81 d~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 81 DFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAA 124 (269)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHH
Confidence 3334454555554443221 2332 5555 8999999999999984
No 256
>PLN02939 transferase, transferring glycosyl groups
Probab=84.50 E-value=61 Score=40.34 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 005753 589 KLEEEIALLQSQLLQI 604 (679)
Q Consensus 589 ~~~~~i~~L~~~l~~~ 604 (679)
.+.+.+..|+++|...
T Consensus 355 ~~~~~~~~~~~~~~~~ 370 (977)
T PLN02939 355 LLQQKLKLLEERLQAS 370 (977)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3445555555555443
No 257
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.46 E-value=64 Score=34.85 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 527 IVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 527 ~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
....|..|...+.+ +++++...-.+..+++.++..+.....++-..|++.|..+.+.++.+--.++.-+..|
T Consensus 227 ~~shI~~Lr~EV~R---LR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lsesEssl 298 (310)
T PF09755_consen 227 LSSHIRSLRQEVSR---LRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSESESSL 298 (310)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444432 2222333333445566666777777788888888888888777777666665555444
No 258
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.43 E-value=29 Score=31.66 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 548 AEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEE 593 (679)
Q Consensus 548 ~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~ 593 (679)
++..++.|+.+-....+.+..++++|.++.+.++.++..+-.++..
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r 87 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESR 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445555555555555555544333333333
No 259
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.43 E-value=40 Score=35.36 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=4.9
Q ss_pred hhheeeccccc
Q 005753 641 SILFKISVPHA 651 (679)
Q Consensus 641 ~~~~~~~~~~~ 651 (679)
+..+-+..||-
T Consensus 212 s~yL~v~Lpy~ 222 (302)
T PF10186_consen 212 SRYLGVPLPYP 222 (302)
T ss_pred HHHhCCCCCCC
Confidence 33444444543
No 260
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.39 E-value=33 Score=36.26 Aligned_cols=58 Identities=24% Similarity=0.198 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhhcccchhhhhHhhhhchhhh
Q 005753 575 KLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQNFFACCGLVLSLLFFPLFPL 635 (679)
Q Consensus 575 ~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (679)
-+.-+|.....+.++++.++..++.+|+-..+.+-.+ +..-.-|.----.+..|+-|.
T Consensus 99 ~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~---~~sl~~~stpqk~f~~p~tp~ 156 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSG---DVSLNPCSTPQKSFATPLTPS 156 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CccccccCCchhhccCCCChh
Confidence 3344444555555666666666666665332222111 111123444444566777776
No 261
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.36 E-value=60 Score=38.04 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=7.4
Q ss_pred CCCCChHHhHHHHH
Q 005753 387 PSPRHRGETASTIL 400 (679)
Q Consensus 387 P~~~~~~ETlsTL~ 400 (679)
|....|.|-|.-|.
T Consensus 104 ~~~~~yQerLaRLe 117 (861)
T KOG1899|consen 104 PEYPEYQERLARLE 117 (861)
T ss_pred CcchHHHHHHHHHh
Confidence 44455566555554
No 262
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.11 E-value=84 Score=35.92 Aligned_cols=13 Identities=46% Similarity=0.447 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHh
Q 005753 339 LSLSALGKCINSL 351 (679)
Q Consensus 339 ~SL~aLg~vI~aL 351 (679)
+|-..+..||..+
T Consensus 78 ~Sr~v~~~vi~~l 90 (498)
T TIGR03007 78 LSRPNLEKVIRML 90 (498)
T ss_pred hChHHHHHHHHHc
Confidence 4555667777766
No 263
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=83.85 E-value=84 Score=35.72 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005753 555 LKIQVAQWKRSEASGNTEIFKLRQMLED 582 (679)
Q Consensus 555 l~~~~~~~~~~~~~~~~ei~~l~k~l~~ 582 (679)
...+-+++..+++...-++.+|+|.+-+
T Consensus 373 mn~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 373 MNQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3333444455555555555555555443
No 264
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.74 E-value=1.1 Score=45.63 Aligned_cols=47 Identities=13% Similarity=0.276 Sum_probs=30.1
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|+||.+++. .. +.++.. ...++.. .+.+..++-||.+||||||.+
T Consensus 13 ~~~~~d~f~~~-~~-~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG-EN-AELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC-Cc-HHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 46889998832 22 333332 2333321 234567999999999999997
No 265
>PRK10869 recombination and repair protein; Provisional
Probab=83.72 E-value=59 Score=38.09 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=13.3
Q ss_pred CcceEEEeeccCCCCccccc
Q 005753 141 GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm 160 (679)
|+|+ -.|.||||||-.|
T Consensus 23 glnv---itGetGaGKS~il 39 (553)
T PRK10869 23 GMTV---ITGETGAGKSIAI 39 (553)
T ss_pred CcEE---EECCCCCChHHHH
Confidence 5554 6899999998766
No 266
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=83.63 E-value=50 Score=32.90 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
+.+..|+.++..+...-......|..|...|-.+.++++-+.+.-..|+..|.
T Consensus 120 ekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 120 EKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55666666666776666667778888888888888898888888888877664
No 267
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.49 E-value=83 Score=35.35 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005753 527 IVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQ 578 (679)
Q Consensus 527 ~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k 578 (679)
....++.|+...++.....+...+.+..+..++...++........+...++
T Consensus 316 lRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ 367 (502)
T KOG0982|consen 316 LRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQE 367 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555556666665555555555544444443
No 268
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=83.34 E-value=3.9 Score=35.94 Aligned_cols=76 Identities=24% Similarity=0.239 Sum_probs=51.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
....++.++.+|+++|++++..+.++|..+..-..-+ ...-...-..+.++-.+++....+...+|.++..|..+|
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~---~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSL---PSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc---CCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999987775522211 112234455566666666666666666666666666665
No 269
>PRK08727 hypothetical protein; Validated
Probab=83.27 E-value=0.9 Score=46.79 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=27.1
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCc-ceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGY-NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~-N~tIfaYGqTgSGKTyTm 160 (679)
..|+||..+.... + ....+ ..+..|+ .-.|+-||++|+||||.+
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~-----~~~~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQL-----QALAAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccCCcH-H--HHHHH-----HHHHhccCCCeEEEECCCCCCHHHHH
Confidence 3578888664332 2 22222 1222233 235999999999999998
No 270
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=83.24 E-value=84 Score=35.26 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=10.2
Q ss_pred hhhhHHHHHHHHHHhc
Q 005753 337 INLSLSALGKCINSLA 352 (679)
Q Consensus 337 IN~SL~aLg~vI~aL~ 352 (679)
|=+|=..+.+|+..|.
T Consensus 75 il~S~~v~~~Vi~~l~ 90 (444)
T TIGR03017 75 IINSDRVAKKVVDKLK 90 (444)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3345567777777764
No 271
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.85 E-value=1.7e+02 Score=38.34 Aligned_cols=31 Identities=13% Similarity=-0.021 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 571 TEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 571 ~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
.++..+.+++.....+....++.+..++.++
T Consensus 935 ~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 935 AALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444344444444444444444
No 272
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.58 E-value=1.1e+02 Score=36.31 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=4.0
Q ss_pred HHhHHHHHH
Q 005753 393 GETASTILF 401 (679)
Q Consensus 393 ~ETlsTL~f 401 (679)
.-|.+.+.|
T Consensus 57 n~~~~s~~~ 65 (716)
T KOG4593|consen 57 NITSKSLLM 65 (716)
T ss_pred cchhHHHHH
Confidence 344444444
No 273
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.53 E-value=57 Score=37.81 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 005753 428 DIQLDKLIAEH 438 (679)
Q Consensus 428 ~~e~~~L~~e~ 438 (679)
+.+++.+..++
T Consensus 122 ~~El~~l~~~l 132 (511)
T PF09787_consen 122 DQELRRLRRQL 132 (511)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 274
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.51 E-value=17 Score=37.88 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIA 595 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~ 595 (679)
..|..++.++..+.+.+......+.+.++....++.+++..|.
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 275
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.41 E-value=1.1e+02 Score=36.12 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 450 ERITIEAQNQISETERNYADALEKERLKYQKDYM 483 (679)
Q Consensus 450 ~~~~~e~~~~l~e~e~~~~~~le~e~~~~~~~~~ 483 (679)
++++...|+++..++..+....+.-+.++.++++
T Consensus 493 KrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle 526 (948)
T KOG0577|consen 493 KRMRRQHQKQLLALEERLKGEREEHRARLDRELE 526 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455666777777777666555555544444443
No 276
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.36 E-value=4.7 Score=39.44 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=18.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQV 559 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~ 559 (679)
...+..+|.+|+.++.......+.++.++..|...+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445555555555555555555555555554444433
No 277
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=82.36 E-value=1.2e+02 Score=36.41 Aligned_cols=62 Identities=5% Similarity=0.053 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005753 555 LKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQN 616 (679)
Q Consensus 555 l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~ 616 (679)
+...++.++..++...+.++.++..+.+...+...+......|++++..+.-..+.++..+.
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33333344444444444444444444444445555555555556666666555555555554
No 278
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=82.22 E-value=97 Score=35.25 Aligned_cols=57 Identities=23% Similarity=0.224 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 546 KAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 546 ~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.++-.+++....+.+.++++.....-++...-+.|+..-.+-..+..+|..-.+++-
T Consensus 378 e~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~ 434 (622)
T COG5185 378 EKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIG 434 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHh
Confidence 344455666666777777776666666555555666555566666666665554443
No 279
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.98 E-value=11 Score=38.52 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKL-EEEIALLQSQ 600 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~-~~~i~~L~~~ 600 (679)
+.++.|+-+..++..++..+-.+...|++.+++.....+-. +.-|..|.++
T Consensus 170 erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~e 221 (290)
T COG4026 170 ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKE 221 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 33444444444444444444445555555555443322222 2335555553
No 280
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.69 E-value=1.3e+02 Score=36.36 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=40.0
Q ss_pred hhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKE---TQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~---~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
.++++|.-.|++.+--- +..-..+-.+++.|.+..+-+...++....--.=..++|+++.+-.+.-++..-.|+++|
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL 179 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKEL 179 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445443332 222233345555555555555444443333222233566666666666667777777777
Q ss_pred Hh
Q 005753 602 LQ 603 (679)
Q Consensus 602 ~~ 603 (679)
..
T Consensus 180 ~~ 181 (717)
T PF09730_consen 180 DQ 181 (717)
T ss_pred HH
Confidence 54
No 281
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=81.68 E-value=80 Score=33.91 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhh
Q 005753 438 HERQQKAFENEIERITIEAQNQISETERNYADALEKERLKYQKDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVA 517 (679)
Q Consensus 438 ~e~~~~~~~~e~~~~~~e~~~~l~e~e~~~~~~le~e~~~~~~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~ 517 (679)
+...+..+.-|+..++...+.. ++....--+-..++...|+..++.....+..+...-..
T Consensus 4 Lq~eia~LrlEidtik~q~qek------------E~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~-------- 63 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEK------------EKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNG-------- 63 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--------
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-----------H
Q 005753 518 SNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAH-----------Q 586 (679)
Q Consensus 518 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~-----------~ 586 (679)
.+..+..+.+.|..+|+++++-+..+|.++..++..+...-...+.-+..-..+.--+.+++. +
T Consensus 64 -----QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d 138 (305)
T PF14915_consen 64 -----QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSD 138 (305)
T ss_pred -----hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcch
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 005753 587 KKKLEEEIALLQSQLLQISFEA 608 (679)
Q Consensus 587 ~~~~~~~i~~L~~~l~~~~~~~ 608 (679)
...+.+....|..+|..+...+
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~ 160 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKF 160 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHH
No 282
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=81.52 E-value=1.3 Score=48.99 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=18.8
Q ss_pred HHHh-cCcceEEEeeccCCCCccccc
Q 005753 136 ESVL-DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 136 ~~~l-~G~N~tIfaYGqTgSGKTyTm 160 (679)
..++ .|-...++.||.||||||.|+
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3344 444444999999999999997
No 283
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.49 E-value=14 Score=42.76 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=29.0
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 560 AQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 560 ~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.++.+......+++.+++..+.....+++.++++|..|+.+|..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555666666666666666666777777777777766553
No 284
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.45 E-value=1.3e+02 Score=36.02 Aligned_cols=9 Identities=33% Similarity=0.309 Sum_probs=4.4
Q ss_pred cccHHHHHH
Q 005753 328 GHTLEEAKS 336 (679)
Q Consensus 328 g~rlkE~~~ 336 (679)
+..+++|..
T Consensus 168 ~~~l~~Ai~ 176 (650)
T TIGR03185 168 ASLLKEAIE 176 (650)
T ss_pred hHHHHHHHH
Confidence 344555543
No 285
>PF13245 AAA_19: Part of AAA domain
Probab=81.39 E-value=0.86 Score=38.76 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=17.9
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
|..++. -+..+..-|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 444555 3444555999999999997
No 286
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=81.38 E-value=1.4 Score=46.13 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=33.9
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCcccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~ 161 (679)
++|.|..+-.....+..+|... ..+++.+-.| ..++-||++|+||||-..
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~--~nl~l~G~~G~GKThLa~ 123 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDL-ASLVEFFERG--ENLVLLGPPGVGKTHLAI 123 (254)
T ss_pred CCcccccccCCcchhHHHHHHH-HHHHHHhccC--CcEEEECCCCCcHHHHHH
Confidence 4555555545556788888776 4455555533 345779999999999984
No 287
>PF13166 AAA_13: AAA domain
Probab=81.15 E-value=1.3e+02 Score=36.01 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=13.5
Q ss_pred cceEEEeeccCCCCcccc
Q 005753 142 YNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyT 159 (679)
+...-+-||..|||||.-
T Consensus 15 ~~~~n~IYG~NGsGKStl 32 (712)
T PF13166_consen 15 FKKINLIYGRNGSGKSTL 32 (712)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 334457899999999854
No 288
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=81.04 E-value=13 Score=39.19 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=38.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhchHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVA--QWKRSEASGNTEIFKLRQMLEDEAH 585 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~--~~~~~~~~~~~ei~~l~k~l~~~~~ 585 (679)
++.+.+.||.+|+.+|.+.+ +.=.|+|+++.++|+. +-+++.+.+..-|+..+.-|.+..+
T Consensus 83 ~l~dRetEI~eLksQL~RMr--EDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMR--EDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 56778888999998887654 3444788888887764 4444444444445554444444433
No 289
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=80.99 E-value=0.68 Score=41.36 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 005753 146 VMAYGQTGTGKTYTL 160 (679)
Q Consensus 146 IfaYGqTgSGKTyTm 160 (679)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 578999999999998
No 290
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=80.93 E-value=21 Score=36.64 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=21.3
Q ss_pred cccchhhhhHhhhhchhhhhhhhhhh-heeecccccccc
Q 005753 617 FFACCGLVLSLLFFPLFPLFFSCVSI-LFKISVPHATGL 654 (679)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 654 (679)
...+-|++.-|+.|-||-+.+...+= .=-+.|||+--.
T Consensus 148 k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ 186 (230)
T PF03904_consen 148 KSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKA 186 (230)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHH
Confidence 34566888777777777766533322 222445665433
No 291
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=80.87 E-value=1.4e+02 Score=36.12 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005753 585 HQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 585 ~~~~~~~~~i~~L~~~l~ 602 (679)
.+++++++=.++|+...+
T Consensus 536 aEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 536 AEIERLRELTRTLQNSMA 553 (861)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555543
No 292
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=80.84 E-value=56 Score=32.03 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--------HHHHHHHHHHHHHHHHH
Q 005753 517 ASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNT--------EIFKLRQMLEDEAHQKK 588 (679)
Q Consensus 517 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~--------ei~~l~k~l~~~~~~~~ 588 (679)
....-.....+..++.+++..+..-...-..++......+.++-+.-.....+.+ +-..++..|...++++.
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhcccchhhhhHhh
Q 005753 589 KLEEEIALLQSQLLQISFEADEVRCIQNFFACCGLVLSLL 628 (679)
Q Consensus 589 ~~~~~i~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (679)
.+...-..|+.+|..+....+..-.+-. |-|+||.+|
T Consensus 102 qLr~rRD~LErrl~~l~~tierAE~l~s---qi~vvl~yL 138 (159)
T PF05384_consen 102 QLRERRDELERRLRNLEETIERAENLVS---QIGVVLNYL 138 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
No 293
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=80.81 E-value=0.5 Score=57.83 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Q 005753 571 TEIFKLRQMLEDEAHQ-KKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 571 ~ei~~l~k~l~~~~~~-~~~~~~~i~~L~~~l~~~~~ 606 (679)
.++..+++.++....+ .+.+++....|..+|..+..
T Consensus 299 ~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e 335 (859)
T PF01576_consen 299 AELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQE 335 (859)
T ss_dssp -------------------------------------
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444333333 33444444445554444433
No 294
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=80.80 E-value=1e+02 Score=34.58 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=13.5
Q ss_pred CCCceeeeEecCCCCCChHHhHHHH
Q 005753 375 GTARTSLVITIGPSPRHRGETASTI 399 (679)
Q Consensus 375 Gnskt~mI~tIsP~~~~~~ETlsTL 399 (679)
+.+..+-|..-+|++.-...-++++
T Consensus 129 ~~s~ii~is~~~~dp~~A~~i~n~~ 153 (444)
T TIGR03017 129 RESSVISIEFSGVDPRFAATVANAF 153 (444)
T ss_pred CCceEEEEEEeCCCHHHHHHHHHHH
Confidence 4455555555566665555555444
No 295
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.78 E-value=82 Score=33.46 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=33.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
.+++....++...+++|+..+..+=++-.|..+|+.++.++-...-..-.-+.-|+.+|+..
T Consensus 197 ~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 197 AKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555555555666666666666655555555555555554444443333444444555443
No 296
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=80.75 E-value=1.3e+02 Score=35.86 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=13.7
Q ss_pred EEecCCCccccCCCCCcccHHHHHHhhhhHHHHHH
Q 005753 312 VVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGK 346 (679)
Q Consensus 312 fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~ 346 (679)
.+|+.||+-. -..+--|..-|.-|.+
T Consensus 52 s~~~~~s~~l---------sqqaelis~qlqE~rr 77 (739)
T PF07111_consen 52 SLELEGSQAL---------SQQAELISRQLQELRR 77 (739)
T ss_pred cccccccHHH---------HHHHHHHHHHHHHHHH
Confidence 3677777643 1344445555544444
No 297
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=80.67 E-value=81 Score=33.32 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
++-+..+..-+-+..........++..-++.++...+++..++.++..|..+..
T Consensus 171 ~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 171 EKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334444444444444445556666666666666666666666666666544
No 298
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=80.49 E-value=1.2e+02 Score=38.70 Aligned_cols=10 Identities=0% Similarity=-0.230 Sum_probs=4.4
Q ss_pred ChHHhHHHHH
Q 005753 391 HRGETASTIL 400 (679)
Q Consensus 391 ~~~ETlsTL~ 400 (679)
++++|++.|.
T Consensus 49 ~l~~tl~~l~ 58 (1109)
T PRK10929 49 ALQSALNWLE 58 (1109)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 299
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=80.47 E-value=0.53 Score=57.68 Aligned_cols=42 Identities=31% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 426 RLDIQLDKLIAEHERQQKAFENEIERITIEAQNQISETERNY 467 (679)
Q Consensus 426 ~l~~e~~~L~~e~e~~~~~~~~e~~~~~~e~~~~l~e~e~~~ 467 (679)
+++.++..++.++++.+..-+.+++..+..++.+|.+++..+
T Consensus 493 Rl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~L 534 (859)
T PF01576_consen 493 RLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAEL 534 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHH
Confidence 344444444444444444445555555555555655555544
No 300
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.39 E-value=39 Score=35.05 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHh
Q 005753 544 LRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRC 613 (679)
Q Consensus 544 ~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~ 613 (679)
.-..++++.+.|..+-..+..++...+++|..+...+...+.++.+..+.|..+..++.-+....+.+|+
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555555555555566666666666666665555555555543
No 301
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=80.17 E-value=1.3 Score=49.47 Aligned_cols=50 Identities=32% Similarity=0.499 Sum_probs=32.0
Q ss_pred CcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 108 ~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
...|+||..... .++.-.|... . -+...-.+.---+|-||.+|+||||-|
T Consensus 81 ~~~ytFdnFv~g-~~N~~A~aa~-~-~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 81 NPKYTFDNFVVG-PSNRLAYAAA-K-AVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCCchhheeeC-CchHHHHHHH-H-HHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 457999986654 4445555433 1 222222333445899999999999999
No 302
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.10 E-value=58 Score=31.26 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 480 KDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQV 559 (679)
Q Consensus 480 ~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~ 559 (679)
..+.++|..|+..+...++.+..... ...-...++..|+..+..-......++.++..+.+.-
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~-----------------daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLIL-----------------DAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888766555443322 1223344555666666666666667777777777777
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 560 AQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 560 ~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
+.+.+++...+..|.+|.........-....+.+...+...
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~ 123 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEE 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666665555555555555554443333
No 303
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=79.79 E-value=85 Score=33.78 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=24.6
Q ss_pred HHHHHHhhchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Q 005753 561 QWKRSEASGNTEIFKLRQMLEDE-------AHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 561 ~~~~~~~~~~~ei~~l~k~l~~~-------~~~~~~~~~~i~~L~~~l~~~ 604 (679)
++-.+.-.++.|+..|+-.|+-. ..-++++.-....|++.|...
T Consensus 112 qWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~~ 162 (351)
T PF07058_consen 112 QWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKGS 162 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 44455555566666666555522 234455556667777776643
No 304
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.71 E-value=25 Score=28.84 Aligned_cols=56 Identities=21% Similarity=0.394 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 534 VKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 534 l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
|+..|+.+.+-+..+.+++...++-...++ ..|.+.......++.+|..|++++.+
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e--------------~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFE--------------SKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544444333 33444444445555555555555543
No 305
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.61 E-value=1.2e+02 Score=35.25 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccc
Q 005753 477 KYQKDYMESIKKLEERWKINQQKQGSDRIMVRSED 511 (679)
Q Consensus 477 ~~~~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~ 511 (679)
.....|.+...+|..........+...++.++.++
T Consensus 359 ~sl~dlkehassLas~glk~ds~Lk~leIalEqkk 393 (654)
T KOG4809|consen 359 SSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKK 393 (654)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 33445666666666666656666666666655443
No 306
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=79.56 E-value=0.76 Score=46.75 Aligned_cols=15 Identities=40% Similarity=0.846 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 005753 146 VMAYGQTGTGKTYTL 160 (679)
Q Consensus 146 IfaYGqTgSGKTyTm 160 (679)
+...|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 456789999999999
No 307
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.39 E-value=1.7e+02 Score=36.36 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=14.1
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
++..+-+|+||||||.-|
T Consensus 25 ~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 25 SGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 445567899999998765
No 308
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=79.38 E-value=1e+02 Score=33.75 Aligned_cols=15 Identities=20% Similarity=-0.006 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHHHh
Q 005753 337 INLSLSALGKCINSL 351 (679)
Q Consensus 337 IN~SL~aLg~vI~aL 351 (679)
+=+|=..+.+|+..+
T Consensus 72 ~L~Sr~~~~~v~~~l 86 (362)
T TIGR01010 72 YMRSRDMLAALEKEL 86 (362)
T ss_pred HHhhHHHHHHHHhcC
Confidence 334556667777655
No 309
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=79.19 E-value=8.6 Score=32.15 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 548 AEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 548 ~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
+|+.+.+|+.++.-....++.+++.+.+.+++|+....+.+.+.+.+..+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4667778888888888888888888888888877777777777777766653
No 310
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=79.13 E-value=34 Score=32.62 Aligned_cols=96 Identities=19% Similarity=0.126 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005753 528 VGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFE 607 (679)
Q Consensus 528 ~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~ 607 (679)
.-+.+.+...++...+........+..+..++..+......++..-..|+.+++.........+..|..|..|.+.+..=
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 45566777777777777777788899999999999999999999999999999999888899999999999998877554
Q ss_pred hH-----HHHhhhhcccchhh
Q 005753 608 AD-----EVRCIQNFFACCGL 623 (679)
Q Consensus 608 ~~-----~~~~~~~~~~~~~~ 623 (679)
++ ..++|....||-|-
T Consensus 98 a~t~LPd~V~RL~~RPA~tga 118 (135)
T TIGR03495 98 ADTPLPDDVIRLRQRPALTGA 118 (135)
T ss_pred hcCCCcHHHHHHhcCCCCCCh
Confidence 44 44777777777664
No 311
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=79.07 E-value=1 Score=52.64 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=23.8
Q ss_pred HHHHHhcCcceEEEeeccCCCCcccccc
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyTm~ 161 (679)
.+..++..-++.|+..|+||||||.||+
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3556677788999999999999999983
No 312
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=79.01 E-value=1e+02 Score=34.88 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 570 NTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 570 ~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
..|+++++-+++.-+++.+++...+-+|++++.
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~ 340 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQII 340 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544
No 313
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=78.94 E-value=0.72 Score=42.04 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=13.4
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
+.+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467899999999999988
No 314
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.90 E-value=52 Score=30.04 Aligned_cols=53 Identities=9% Similarity=0.175 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 531 LTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 531 i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
-.+|+..++..+.......+.+.+|+.++++....++.....-.+++..+...
T Consensus 39 kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~ 91 (107)
T PF09304_consen 39 KDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567777777777777778888888888888777776443333444444444
No 315
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=78.89 E-value=1.2 Score=51.21 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=23.5
Q ss_pred HHHHHhcCcceEEEeeccCCCCcccccc
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyTm~ 161 (679)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556677778899999999999999993
No 316
>PRK10436 hypothetical protein; Provisional
Probab=78.86 E-value=1.1 Score=51.16 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=22.9
Q ss_pred HHHHhcCcceEEEeeccCCCCcccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm~ 161 (679)
+..++..-++.|+..|+||||||.||+
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 455666778999999999999999993
No 317
>PF13166 AAA_13: AAA domain
Probab=78.81 E-value=1.5e+02 Score=35.42 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=19.6
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 563 KRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 563 ~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
..........+..+.+.+.....+...++.+|..|+.++.
T Consensus 416 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 416 QKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444444555555555555555544
No 318
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=78.71 E-value=19 Score=39.24 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 005753 528 VGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAH-QKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 528 ~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~-~~~~~~~~i~~L~~~l~~~~ 605 (679)
.+|..+++++-++.++..+.+-++++++.+-.+.+...+......+.++.+.|..... ....-.+.+..|++++..+.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 3455555555554444444444444444444444444444444444444444433321 11122455566666655443
No 319
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=78.42 E-value=72 Score=31.38 Aligned_cols=74 Identities=23% Similarity=0.256 Sum_probs=28.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
.+...++..|+....+..+.-..+-+.++.+..+...++.++....+.+.+++..+.....+..++...+..|.
T Consensus 59 eERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 59 EERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333344444444444444444444444444444444433333
No 320
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.37 E-value=93 Score=33.91 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=26.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRS 565 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~ 565 (679)
....+..++...|+..+...+++-..++..+.-|+.++...+..
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 34455556666666666666666666666666666666654433
No 321
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=78.28 E-value=1.4 Score=52.42 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=24.7
Q ss_pred cceEEEeeccCCCCccccc------cCCCCCCCCCcchH
Q 005753 142 YNGTVMAYGQTGTGKTYTL------GPLGEEDPATRGIM 174 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm------~G~g~~~~~~~GIi 174 (679)
-|-.++.+|+||||||.-+ -|+|..+..++|+|
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmI 308 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMI 308 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCee
Confidence 3667888999999999886 36666655557665
No 322
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=78.25 E-value=25 Score=29.60 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005753 548 AEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFE 607 (679)
Q Consensus 548 ~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~ 607 (679)
+|.++..|+.+++.+....+....++..+.++=+...........++..|+.++..+..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666655555555555555555555555444333
No 323
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=78.24 E-value=1.5e+02 Score=34.85 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 545 RKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 545 ~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
....+++......+++++...++.+...+......+.. .+...++--.+..|..-|...
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~-~~~~~~l~~a~~~l~~~l~~~ 424 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDE-NRRAQQLWLAVDALKSALDSG 424 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 33444444455555555555555555544444433332 255566666777777776644
No 324
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=78.09 E-value=1.4 Score=41.82 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=18.9
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
++.+.+|.| ++..|+||||||+..
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHH
Confidence 444556766 789999999999986
No 325
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.91 E-value=20 Score=35.08 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 552 VNNLKIQVAQWKRSEASGNTEIFKLRQML--EDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 552 ~~~l~~~~~~~~~~~~~~~~ei~~l~k~l--~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
+.+|++++.+++.+...+.+++..+...+ ++.....+.++.++..|+.+|..+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444 233345555555555555555543
No 326
>PRK06921 hypothetical protein; Provisional
Probab=77.42 E-value=2.2 Score=45.00 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=23.6
Q ss_pred HHHHHhhHHHHHHHhc---CcceEEEeeccCCCCccccc
Q 005753 125 RVYQAVAKPVVESVLD---GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 125 ~Vy~~~~~plV~~~l~---G~N~tIfaYGqTgSGKTyTm 160 (679)
.+|. .+...++++-. +....++-||++|+||||.+
T Consensus 97 ~~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 97 DAYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred HHHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHH
Confidence 3443 33455665532 23456899999999999998
No 327
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.42 E-value=1.2e+02 Score=36.19 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWK 563 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~ 563 (679)
.+..+...+++.+...+..++.+...+.+|+.+++++.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44445555555555555555555555666666666665
No 328
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=77.41 E-value=1 Score=40.12 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=15.3
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 46788999999999998
No 329
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=77.35 E-value=38 Score=31.54 Aligned_cols=41 Identities=10% Similarity=0.273 Sum_probs=29.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKR 564 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~ 564 (679)
......+..+|+++++.-...++++|..+++.+.=++++..
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667788888888877888888888877776666543
No 330
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=77.29 E-value=1 Score=45.13 Aligned_cols=18 Identities=50% Similarity=0.794 Sum_probs=16.3
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
++.|+-.|+||||||.+|
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367899999999999998
No 331
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=77.09 E-value=18 Score=32.69 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 538 LLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 538 l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
|..+..++..+|++...+..++++|...+ ..+..+|...++.++..++.....|+++|.+..
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasL------FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~ 64 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASL------FEEANKMVADARRERAALEEKNEQLEKQLKEKE 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666555443 267788999999999999999999999987664
No 332
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=77.06 E-value=1.4 Score=48.17 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=20.1
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..++.--.+.|+..|+||||||.||
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 34444334578999999999999999
No 333
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=77.06 E-value=1.5 Score=48.71 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=17.0
Q ss_pred cceEEEeeccCCCCccccc
Q 005753 142 YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm 160 (679)
.++.|+..|+||||||.||
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4667889999999999999
No 334
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.01 E-value=21 Score=30.32 Aligned_cols=52 Identities=6% Similarity=0.104 Sum_probs=29.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEI 573 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei 573 (679)
+.+++-...|++|...-++.......+..-+..|+.+..++......+...+
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555555555566666665555554444333333
No 335
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=76.88 E-value=66 Score=34.16 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHhh
Q 005753 552 VNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI-SFEADEVRCI 614 (679)
Q Consensus 552 ~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~~~~ 614 (679)
+..+......+....++...|++..+|.|...+.-+=..-++-..||.+|..+ +...+.-||+
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl 248 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNL 248 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333333333333334444444444433333333344555555555533 3333333443
No 336
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=76.83 E-value=1.4 Score=44.13 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=19.8
Q ss_pred HHHHHhcCcceEEEeeccCCCCccccc
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|..++...+..++..|..||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 344555555555666899999999998
No 337
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=76.78 E-value=0.89 Score=47.42 Aligned_cols=125 Identities=16% Similarity=0.256 Sum_probs=72.4
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceE-EEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGT-VMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD 188 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~t-IfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~ 188 (679)
...+|...+-+...+.+.+.+ ..+++|..+- ++-||..|||||.++ ..++.... ..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlV----------kall~~y~--------~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLV----------KALLNEYA--------DQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHH----------HHHHHHHh--------hc
Confidence 455666666655555555554 5677776443 666999999999887 22222211 11
Q ss_pred CCeEEEEEEEeecceeeecC------CCCCCcceeeecCCCCCeecCCcEEE-EecChhHHHHHHHhhhhhccccccccc
Q 005753 189 TDSVTVSYLQLYMETIQDLL------DPTNDNISIAEDPKTGDVSLPGVTLV-EIRDQHSFVELLKLGEAHRFAANTKLN 261 (679)
Q Consensus 189 ~~~V~vS~lEIYnE~v~DLL------~~~~~~l~i~ed~~~G~v~v~glt~~-~V~s~ee~~~lL~~G~~~R~~~~T~~N 261 (679)
. +-.+||..+.+.||- ...+...-+ ++.+|+-- .=.+...+..+|.-|...| ....-+.
T Consensus 80 G----LRlIev~k~~L~~l~~l~~~l~~~~~kFIl---------f~DDLsFe~~d~~yk~LKs~LeGgle~~-P~Nvliy 145 (249)
T PF05673_consen 80 G----LRLIEVSKEDLGDLPELLDLLRDRPYKFIL---------FCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIY 145 (249)
T ss_pred C----ceEEEECHHHhccHHHHHHHHhcCCCCEEE---------EecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEE
Confidence 1 556888887776663 222222222 22333311 1123456777777676555 5667777
Q ss_pred ccccCcceEE
Q 005753 262 TESSRSHAFL 271 (679)
Q Consensus 262 ~~SSRSH~If 271 (679)
++|.|-|.|-
T Consensus 146 ATSNRRHLv~ 155 (249)
T PF05673_consen 146 ATSNRRHLVP 155 (249)
T ss_pred Eecchhhccc
Confidence 8888888764
No 338
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=76.74 E-value=2.1 Score=47.11 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=28.2
Q ss_pred CChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 121 ASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 121 asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|+.+|+.+...+. ......+|.-|.-||||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 469999998855433 345567799999999999998
No 339
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.68 E-value=62 Score=30.22 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 543 QLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 543 ~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
.....++.++.+|+.+++.+-..+....+++++|+.-+++.
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34445566667777777777777777777777777666655
No 340
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=76.35 E-value=17 Score=39.01 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=64.4
Q ss_pred hhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 521 KDSMASIVG-ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 521 ~~~~~~~~~-~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
+.-+.+... .+.+++.+.++-+....++.++-.-|-=+++-|+.+++...+.+..-.++.++...+.+.....++.|+-
T Consensus 110 EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~ 189 (405)
T KOG2010|consen 110 EASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQH 189 (405)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555 6789999999999999999877777777777888888888777777777777777777777777777766
Q ss_pred HHHhhhhhh
Q 005753 600 QLLQISFEA 608 (679)
Q Consensus 600 ~l~~~~~~~ 608 (679)
+-+++.+..
T Consensus 190 ~~~elKe~l 198 (405)
T KOG2010|consen 190 KMEELKEGL 198 (405)
T ss_pred HHHHHHHHH
Confidence 655544433
No 341
>PF12846 AAA_10: AAA-like domain
Probab=76.07 E-value=1.1 Score=46.63 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=16.0
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
|.-++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 556789999999999998
No 342
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.92 E-value=2 Score=45.26 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=25.2
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 131 AKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 131 ~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..++++++.--.-+.|+..|.||||||.||
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 456677777777888999999999999998
No 343
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=75.75 E-value=1.6 Score=48.09 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=18.1
Q ss_pred CcceEEEeeccCCCCccccc
Q 005753 141 GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm 160 (679)
--++.|+..|+||||||.||
T Consensus 132 ~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35789999999999999998
No 344
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=75.16 E-value=1.5 Score=45.95 Aligned_cols=18 Identities=44% Similarity=0.754 Sum_probs=16.1
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
.+.|+..|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 667788899999999998
No 345
>PRK09183 transposase/IS protein; Provisional
Probab=74.99 E-value=2 Score=45.05 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=25.8
Q ss_pred eccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCcccccc
Q 005753 113 FDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 113 FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~ 161 (679)
||.=|.+..+...+..-..... +-.|.| ++-+|++|+||||.+.
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHH
Confidence 3433555555554443322222 225554 5679999999999983
No 346
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=74.90 E-value=1e+02 Score=31.42 Aligned_cols=39 Identities=28% Similarity=0.229 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005753 569 GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFE 607 (679)
Q Consensus 569 ~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~ 607 (679)
...+-..|++.|.....+-..++...+.|+++-.++.++
T Consensus 161 i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 161 IKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666677777777777765555443
No 347
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=74.85 E-value=93 Score=35.73 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=8.5
Q ss_pred hhhhhhhhheee
Q 005753 635 LFFSCVSILFKI 646 (679)
Q Consensus 635 ~~~~~~~~~~~~ 646 (679)
.+|.||-++|-.
T Consensus 358 ~I~e~ve~i~~t 369 (596)
T KOG4360|consen 358 RIFETVEQINET 369 (596)
T ss_pred HHHHHHHHHHHH
Confidence 378888877753
No 348
>PRK00295 hypothetical protein; Provisional
Probab=74.83 E-value=19 Score=30.16 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 548 AEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 548 ~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
+|+.+.+|+.++.-.+..++.+++.+.+.+++|.....+...+.+.+..++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455678888888888888888888888888888777666666666555544
No 349
>PRK09343 prefoldin subunit beta; Provisional
Probab=74.65 E-value=70 Score=29.72 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=45.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------hchHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEA---------------SGNTEIFKLRQMLEDEAHQKKK 589 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~---------------~~~~ei~~l~k~l~~~~~~~~~ 589 (679)
.....+...+++.++........++.++++.+.-++++..-.+ ...+.+.++.+.++......+.
T Consensus 10 q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~ 89 (121)
T PRK09343 10 QAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRT 89 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666665555554433221 2345556666666666666666
Q ss_pred HHHHHHHHHHHHHhh
Q 005753 590 LEEEIALLQSQLLQI 604 (679)
Q Consensus 590 ~~~~i~~L~~~l~~~ 604 (679)
++.....|++++...
T Consensus 90 lekq~~~l~~~l~e~ 104 (121)
T PRK09343 90 LEKQEKKLREKLKEL 104 (121)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665544
No 350
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=74.65 E-value=1.1e+02 Score=32.59 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=14.5
Q ss_pred hhhchhhhhhhhhhhheeeccc
Q 005753 628 LFFPLFPLFFSCVSILFKISVP 649 (679)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~ 649 (679)
+|..||-+++=|+-+++|..-|
T Consensus 266 ~~i~llfi~iel~Pv~~Kl~~~ 287 (301)
T PF14362_consen 266 LFIFLLFIAIELLPVLFKLLSG 287 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444778888888886544
No 351
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=74.38 E-value=1.6 Score=48.03 Aligned_cols=38 Identities=29% Similarity=0.607 Sum_probs=28.0
Q ss_pred eEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccCCCeEEEEEEEeec
Q 005753 144 GTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLDTDSVTVSYLQLYM 201 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~~~~V~vS~lEIYn 201 (679)
+-|+-||.+||||||++ +.+|+.. +...|+++++|-|+
T Consensus 31 S~~~iyG~sgTGKT~~~------------------r~~l~~~--n~~~vw~n~~ecft 68 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV------------------RQLLRKL--NLENVWLNCVECFT 68 (438)
T ss_pred eeEEEeccCCCchhHHH------------------HHHHhhc--CCcceeeehHHhcc
Confidence 34689999999999998 3444444 23458999998874
No 352
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=74.26 E-value=1.1e+02 Score=35.78 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=12.2
Q ss_pred EeeccCCCCccccc
Q 005753 147 MAYGQTGTGKTYTL 160 (679)
Q Consensus 147 faYGqTgSGKTyTm 160 (679)
+-+|.||||||-.|
T Consensus 26 vitG~nGaGKS~ll 39 (563)
T TIGR00634 26 VLTGETGAGKSMII 39 (563)
T ss_pred EEECCCCCCHHHHH
Confidence 46899999999877
No 353
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=74.24 E-value=2.2 Score=42.18 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
-.++-||++|+||||..
T Consensus 48 ~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLA 64 (178)
T ss_dssp -EEEEEESTTSSHHHHH
T ss_pred eEEEEEhhHhHHHHHHH
Confidence 45899999999999997
No 354
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=74.24 E-value=1 Score=51.42 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHH-HHH--HHH----
Q 005753 481 DYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQ-LRK-AAE--EEV---- 552 (679)
Q Consensus 481 ~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~-~~~-~~E--~~~---- 552 (679)
+|+++|..|+++|....+++.+.|.-+..++ ....+-+.+++.+|+...+ ++. +.| ..+
T Consensus 373 ~YEqEI~~LkErL~~S~rkLeEyErrLl~QE-------------qqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII 439 (495)
T PF12004_consen 373 KYEQEIQSLKERLRMSHRKLEEYERRLLSQE-------------QQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSII 439 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHH
Confidence 3888999999998888777776655322210 1222334566666665332 221 111 122
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
..|-.-.++|+++-.++++-|...++.|+...+.+..+...-..|..-|.+
T Consensus 440 ~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~ 490 (495)
T PF12004_consen 440 SRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQ 490 (495)
T ss_dssp ---------------------------------------------------
T ss_pred hhhhhhhhhhhhhHHHHhcccccchHHHHHhhhhccccccccccccccccc
Confidence 223333345555555666666666666666656666666666666555443
No 355
>PRK02119 hypothetical protein; Provisional
Probab=74.20 E-value=19 Score=30.61 Aligned_cols=51 Identities=10% Similarity=0.170 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALL 597 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L 597 (679)
.+|+.+.+|+.++.-.+..++.+++.+.+.+++|.....+...+.+.+..+
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677777778777777777788888888777777666665555555443
No 356
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=73.99 E-value=2.8 Score=47.59 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=32.4
Q ss_pred CcceeeccccCCCCChHHHHHHhhHHHHHHH--hcC--cceEEEeeccCCCCccccc
Q 005753 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESV--LDG--YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 108 ~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~--l~G--~N~tIfaYGqTgSGKTyTm 160 (679)
...|+||..... .+++..|.. +..+.+.. ..| ||. +|-||++|+||||.+
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred CccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 346899987754 355555543 34444322 223 454 678999999999998
No 357
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.91 E-value=19 Score=30.50 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 548 AEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 548 ~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
+|+.+.+|+.++.-.+...+.+++.+.+.+++|.....+.+.+.+.+..++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777888888888888888888888888777766666655555554443
No 358
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=73.82 E-value=2 Score=45.22 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=20.7
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..++..-.+.|+-.|.||||||.||
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 34455555677899999999999998
No 359
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=73.81 E-value=21 Score=32.86 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005753 546 KAAEEEVNNLKIQVAQWK-RSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFE 607 (679)
Q Consensus 546 ~~~E~~~~~l~~~~~~~~-~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~ 607 (679)
.++|-.+++|+.++...+ ...+....+++++++.+.++.+-.+.+..+.....+.|++.+-.
T Consensus 3 sQmElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstk 65 (111)
T PF12001_consen 3 SQMELRIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTK 65 (111)
T ss_pred hHHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 356777888888888877 45555588999999999999899999999999999999877544
No 360
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.77 E-value=26 Score=34.92 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=17.9
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 564 RSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 564 ~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
.+.+...+|+.+++++|+....+.+.+..++..|.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666555444444444444443
No 361
>PRK04325 hypothetical protein; Provisional
Probab=73.68 E-value=19 Score=30.61 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 548 AEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIAL 596 (679)
Q Consensus 548 ~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~ 596 (679)
+++.+.+|+.++.-.+...+.++..+.+.+++|.....+.+.+.+.+..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888777777888888888777776665555555444443
No 362
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=73.38 E-value=1.9e+02 Score=34.93 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--------HHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 005753 528 VGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGN--------TEIFKLRQMLEDEA---HQKKKLEEEIAL 596 (679)
Q Consensus 528 ~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~--------~ei~~l~k~l~~~~---~~~~~~~~~i~~ 596 (679)
..+|..|++++.+.....-. .-+|++++++|+.+....- +.|+.|.+++...- -+--.+.+.-..
T Consensus 648 k~KIe~L~~eIkkkIe~av~----ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~ 723 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIR----SSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEE 723 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHH
Confidence 45566666655543222211 1357777777777665532 66777776665321 233456666777
Q ss_pred HHHHHHhhh
Q 005753 597 LQSQLLQIS 605 (679)
Q Consensus 597 L~~~l~~~~ 605 (679)
|+.+|+.+.
T Consensus 724 l~~e~~~~~ 732 (762)
T PLN03229 724 LEAELAAAR 732 (762)
T ss_pred HHHHHHHhh
Confidence 777776543
No 363
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=73.33 E-value=1.2e+02 Score=31.57 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=10.0
Q ss_pred hhhHhhhhchhhhhhhhhhh
Q 005753 623 LVLSLLFFPLFPLFFSCVSI 642 (679)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~ 642 (679)
+++.+++|.+|-+|+.+|-+
T Consensus 228 ~~~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444456666665543
No 364
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=73.15 E-value=2.3 Score=44.03 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=19.0
Q ss_pred HHHhcCcceEEEeeccCCCCccccc
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+....+.++-+|++|+|||+++
T Consensus 36 ~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 36 EYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 3334444667888999999999887
No 365
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=73.08 E-value=1.1 Score=53.78 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIF 574 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~ 574 (679)
+.....++.+|+..+..+..+...++.++..|++++..+..+.+....+..
T Consensus 365 le~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~ 415 (713)
T PF05622_consen 365 LEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERD 415 (713)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555554444444433333
No 366
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=73.01 E-value=78 Score=29.81 Aligned_cols=41 Identities=27% Similarity=0.257 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 569 GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 569 ~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
..+.+..+.+.++......+++...+..+.+++.+......
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666665544444
No 367
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=72.95 E-value=1.6e+02 Score=32.81 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=42.4
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHhhhh
Q 005753 561 QWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL--QISFEADEVRCIQN 616 (679)
Q Consensus 561 ~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~~~~~~ 616 (679)
.|..|...+.+-+..|+.+|.........+......|+.++. ..+...|..+|+..
T Consensus 321 ~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~iD~~~c~~~ 378 (384)
T PF03148_consen 321 GLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLFIDRERCMQL 378 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455667777888888888888888888888888888888876 44566666677653
No 368
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.81 E-value=46 Score=33.54 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 005753 533 EVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGN 570 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~ 570 (679)
.+++++.........+|.++.+|+.++.+++.......
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555566666666655555444333
No 369
>PRK00736 hypothetical protein; Provisional
Probab=72.75 E-value=20 Score=29.96 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 548 AEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIAL 596 (679)
Q Consensus 548 ~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~ 596 (679)
.+..+.+|+.++.-.+..++.++..+.+.+++|.....+...+.+.+..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888888888888887666655555555444
No 370
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.61 E-value=1.8e+02 Score=33.73 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=46.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-------HHHH----HHHHHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLR-------QMLE----DEAHQKKKLEEEI 594 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~-------k~l~----~~~~~~~~~~~~i 594 (679)
-...+|.+|-.+++.-..+...+..+++.|..+++..+++.+...+++.... .+|+ ++..|..-|.|.+
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL 496 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456677777777776666777777888887777765555555555444444 3333 2223445555555
Q ss_pred HHHHHHHHhh
Q 005753 595 ALLQSQLLQI 604 (679)
Q Consensus 595 ~~L~~~l~~~ 604 (679)
..|-++|+..
T Consensus 497 asmNeqL~~Q 506 (518)
T PF10212_consen 497 ASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 371
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=72.27 E-value=1.2 Score=53.52 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 570 NTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 570 ~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
..++..++..++....+++.+..+...|+.
T Consensus 390 ~~e~~~L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 390 EFENKQLEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443444444444444433
No 372
>PRK11519 tyrosine kinase; Provisional
Probab=72.21 E-value=2.1e+02 Score=34.61 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=5.7
Q ss_pred HHHHHHhcCcceE
Q 005753 133 PVVESVLDGYNGT 145 (679)
Q Consensus 133 plV~~~l~G~N~t 145 (679)
.++..|++-.|-.
T Consensus 98 ~v~~~VV~~L~L~ 110 (719)
T PRK11519 98 LVLGKTVDDLDLD 110 (719)
T ss_pred HHHHHHHHHhCCC
Confidence 4444444444443
No 373
>PF13514 AAA_27: AAA domain
Probab=72.17 E-value=2.9e+02 Score=35.33 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=5.4
Q ss_pred eeeccccCC
Q 005753 111 YEFDEVLTE 119 (679)
Q Consensus 111 F~FD~VF~~ 119 (679)
-.|+.+|+=
T Consensus 87 ~~f~~iF~~ 95 (1111)
T PF13514_consen 87 ETFEAIFSF 95 (1111)
T ss_pred HHHHHHHcC
Confidence 456777753
No 374
>PRK00846 hypothetical protein; Provisional
Probab=72.11 E-value=24 Score=30.40 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 545 RKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 545 ~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
-..+++.+.+|+.++.-.....+.+++.+.+.++.++..+.+.+.+.+.+..++..
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34567777888888888888888888888888877777777766666666655533
No 375
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=71.88 E-value=1.3e+02 Score=36.10 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 005753 531 LTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEA---HQKKKLEEEIALLQSQL 601 (679)
Q Consensus 531 i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~---~~~~~~~~~i~~L~~~l 601 (679)
+..|++.++..+.....+...+..+...+.++.........++..+..+|-+.. .++++|..+|..|+-.+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 555555555555555555555555555555555555444444544444444333 56666666666665443
No 376
>PRK04406 hypothetical protein; Provisional
Probab=71.86 E-value=21 Score=30.46 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIAL 596 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~ 596 (679)
.+|+.+.+|+.++.-.+...+.++..+.+.+++|.....+...+.+.+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777777777777777777777776665555555444433
No 377
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=71.70 E-value=28 Score=35.65 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
.|++++......++..+.+...++|+.+....+-..+-++-+.|+++
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444
No 378
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.56 E-value=65 Score=30.06 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=21.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQW 562 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~ 562 (679)
+...+.++..++.++......+..+.+++-.|-.+.+++
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666665555555555555555544433
No 379
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.45 E-value=41 Score=33.76 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASG----NTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~----~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
-++++.|+.++.+++.+++.. -+.|.++++.+......-..-.+.|-.|+.=+.
T Consensus 109 l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 109 LEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344445555555555554432 357778888888888888888888888887765
No 380
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=71.44 E-value=4.5 Score=42.18 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=14.0
Q ss_pred EEeeccCCCCccccc
Q 005753 146 VMAYGQTGTGKTYTL 160 (679)
Q Consensus 146 IfaYGqTgSGKTyTm 160 (679)
|...|++|+|||.++
T Consensus 29 i~vvG~~~~GKSt~l 43 (240)
T smart00053 29 IAVVGGQSAGKSSVL 43 (240)
T ss_pred EEEEcCCCccHHHHH
Confidence 788999999999997
No 381
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.42 E-value=82 Score=33.50 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005753 577 RQMLEDEAHQKKKLEEEI 594 (679)
Q Consensus 577 ~k~l~~~~~~~~~~~~~i 594 (679)
||.+.+..-|-.|+|.=.
T Consensus 148 QKYFvDINiQN~KLEsLL 165 (305)
T PF15290_consen 148 QKYFVDINIQNKKLESLL 165 (305)
T ss_pred HHHHhhhhhhHhHHHHHH
Confidence 444444444444444433
No 382
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=71.34 E-value=2e+02 Score=33.28 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 544 LRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 544 ~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
.+.-+++++.+|-.++...........++-..|.+.|+...++++.+.+++..+..
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~ 469 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQ 469 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665555555555555555555555554444444444433333
No 383
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.18 E-value=1.9e+02 Score=32.86 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005753 422 SLARRLDIQLDKLIAEHERQQKAFENEIERITIEAQNQISETERNYADALEKERLKYQKDYMESIKKLEERWKINQQKQG 501 (679)
Q Consensus 422 ~l~~~l~~e~~~L~~e~e~~~~~~~~e~~~~~~e~~~~l~e~e~~~~~~le~e~~~~~~~~~~~i~~le~~l~~~~~~~~ 501 (679)
+..+.....+..| .+...+......|++ ....+..++.+.-.....-|.+....+. .....+-.|-+.|...++.+.
T Consensus 248 ae~kqh~v~~~al-es~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~-~~~~~~~~ltqqwed~R~pll 324 (521)
T KOG1937|consen 248 AEYKQHLVEYKAL-ESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLA-ELNKQMEELTQQWEDTRQPLL 324 (521)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHH
Q ss_pred hhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhchHHHHHHHHH
Q 005753 502 SDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKR--SEASGNTEIFKLRQM 579 (679)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~--~~~~~~~ei~~l~k~ 579 (679)
.....+..+.++... .-.+ ..+|+++++.|+---+.-..-|..-..|.++++.+-. ....+..-|.+.-.+
T Consensus 325 ~kkl~Lr~~l~~~e~------e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gn 397 (521)
T KOG1937|consen 325 QKKLQLREELKNLET------EDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGN 397 (521)
T ss_pred HHHHHHHHHHhcccc------hHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhhccc
Q 005753 580 LEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQNFFA 619 (679)
Q Consensus 580 l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~~~~ 619 (679)
+-..+.++-++-++-+.|++|+.-.+.- ++++||
T Consensus 398 iRKq~~DI~Kil~etreLqkq~ns~se~------L~Rsfa 431 (521)
T KOG1937|consen 398 IRKQEQDIVKILEETRELQKQENSESEA------LNRSFA 431 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhHH
No 384
>PF13479 AAA_24: AAA domain
Probab=71.17 E-value=2 Score=43.55 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.4
Q ss_pred ceEEEeeccCCCCcccccc
Q 005753 143 NGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm~ 161 (679)
+..++.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999999873
No 385
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=70.97 E-value=4.1 Score=45.22 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=42.3
Q ss_pred CcceeeccccCCCCChHHHHHHhhHHHHHHHhc----CcceEEEeeccCCCCccccc
Q 005753 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLD----GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 108 ~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~----G~N~tIfaYGqTgSGKTyTm 160 (679)
..+++||.+.+..---..+.+.++..++.+++. -.---+.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 356889999888877788888888888888774 33445778999999999874
No 386
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.96 E-value=1.8e+02 Score=32.63 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 442 QKAFENEIERITIEAQNQISETERNYADALEKERLKY 478 (679)
Q Consensus 442 ~~~~~~e~~~~~~e~~~~l~e~e~~~~~~le~e~~~~ 478 (679)
...++..+++++...+..+. .+...|+.|+.++
T Consensus 228 ~~~L~~~~e~Lk~~~~~e~~----~~~~~LqEEr~R~ 260 (395)
T PF10267_consen 228 QSRLEESIEKLKEQYQREYQ----FILEALQEERYRY 260 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHH
Confidence 33455666666555554432 3444555555443
No 387
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.73 E-value=1.5e+02 Score=31.48 Aligned_cols=8 Identities=13% Similarity=-0.209 Sum_probs=3.5
Q ss_pred hHHhHHHH
Q 005753 392 RGETASTI 399 (679)
Q Consensus 392 ~~ETlsTL 399 (679)
+.+++++.
T Consensus 25 ~a~~~~~~ 32 (265)
T COG3883 25 FAALLSDK 32 (265)
T ss_pred hhhhhhhH
Confidence 34444443
No 388
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=70.69 E-value=3.2 Score=44.59 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=19.6
Q ss_pred HHHHHHhcC-cceEEEeeccCCCCccccc
Q 005753 133 PVVESVLDG-YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~G-~N~tIfaYGqTgSGKTyTm 160 (679)
.++.+.+.+ .---.+-||+.|||||.|.
T Consensus 46 ~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 46 QVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 334444444 4445678999999999996
No 389
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=70.62 E-value=2.1e+02 Score=33.21 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=38.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
+....+++.++++.+......-..-+.....++..+..+...+...+.+.++.+..|...+++..+.++....+++.|
T Consensus 349 vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l 426 (570)
T COG4477 349 VRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKL 426 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443333333333334444444444444444455555555555555555555555555555554
No 390
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=70.43 E-value=2.2 Score=42.41 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=19.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCccccc
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+.+.+-.|.+.+++-||+.|+|||+.|
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 333334567889999999999999987
No 391
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=70.38 E-value=63 Score=30.46 Aligned_cols=59 Identities=8% Similarity=0.184 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 545 RKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 545 ~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
++.+.+.|..+-.++++..+.-+...+++.+++..++....+...+..-+..|+-.+.+
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777777777777777777777777777777777777766654
No 392
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=70.38 E-value=4.1 Score=42.65 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=15.7
Q ss_pred cceEEEeeccCCCCccccc
Q 005753 142 YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm 160 (679)
.++.++..|..|||||+||
T Consensus 12 ~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH
T ss_pred CCCCEEEEeCCCCCchHHH
Confidence 6788888899999999998
No 393
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=70.19 E-value=50 Score=28.58 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
.+..++.++++.+.....+-+.+.+-...|+..
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L 36 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEEL 36 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 455566666666666555555555544444444
No 394
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=69.95 E-value=1.3e+02 Score=30.49 Aligned_cols=13 Identities=23% Similarity=0.601 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 005753 588 KKLEEEIALLQSQ 600 (679)
Q Consensus 588 ~~~~~~i~~L~~~ 600 (679)
..++++|..++.+
T Consensus 168 er~e~ki~~~ea~ 180 (221)
T PF04012_consen 168 ERMEEKIEEMEAR 180 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 395
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=69.87 E-value=38 Score=34.22 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
++|+-+..-+.++.++..........+...+.-|+...+|...|+.+...=+.+|+++.
T Consensus 136 e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 136 EFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444333344556777777788888888888888877777777654
No 396
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=69.72 E-value=2.5e+02 Score=33.63 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=23.1
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 566 EASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 566 ~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
+...+.-+..|+..|..+...-++.++.+..|..+|..-+.+-+
T Consensus 351 v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~ele 394 (786)
T PF05483_consen 351 VTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELE 394 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHH
Confidence 33344455555555555555555566666666555554444444
No 397
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=69.27 E-value=2.9e+02 Score=34.18 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=8.5
Q ss_pred HHHHHhhhhHHHHHHHHHHhc
Q 005753 332 EEAKSINLSLSALGKCINSLA 352 (679)
Q Consensus 332 kE~~~IN~SL~aLg~vI~aL~ 352 (679)
++-+..=+-+.-..+=++.|.
T Consensus 939 ~~~ks~~Kl~kr~eKeL~~Lr 959 (1189)
T KOG1265|consen 939 REHKSFVKLLKRHEKELRDLR 959 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444443
No 398
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.20 E-value=97 Score=33.76 Aligned_cols=118 Identities=16% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 485 SIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKR 564 (679)
Q Consensus 485 ~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~ 564 (679)
.|..-|.+++..-..+.+.++-.--++++..-.+.. .+++...+..+|+..-++....--....-+.+.+.+..+++.
T Consensus 57 ~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~e--s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~ 134 (401)
T PF06785_consen 57 AIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIRE--SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEG 134 (401)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHH
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 565 SEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 565 ~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
-.....++-..++.+|+....+....+++-.+|-++|+++
T Consensus 135 li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 135 LIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
No 399
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=68.98 E-value=2.9 Score=41.51 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=16.5
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
|..++.--. ..+..|+.|||||+|+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
Confidence 455553333 5677999999999997
No 400
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=68.58 E-value=1.4e+02 Score=30.20 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 005753 591 EEEIALLQSQ 600 (679)
Q Consensus 591 ~~~i~~L~~~ 600 (679)
...|...+.+
T Consensus 168 a~~ir~~eee 177 (201)
T PF12072_consen 168 AALIRRIEEE 177 (201)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 401
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=68.48 E-value=2.1 Score=38.72 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.5
Q ss_pred EEeeccCCCCccccc
Q 005753 146 VMAYGQTGTGKTYTL 160 (679)
Q Consensus 146 IfaYGqTgSGKTyTm 160 (679)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999886
No 402
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=68.40 E-value=2.1 Score=47.67 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=0.0
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhcCc----ceEEEeeccCCCCcccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDGY----NGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G~----N~tIfaYGqTgSGKTyT 159 (679)
.++||.|-+-+..-+++.+.+..|+.. ..+..+ ...|+-||++|+|||+.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHH
No 403
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=68.34 E-value=46 Score=33.85 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 533 EVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.|+..|...+......+..+..++..+..-..+++.-..++...+.+.+..++....++.++..|...+.
T Consensus 35 ~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 35 SLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333344444444444443
No 404
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=68.18 E-value=23 Score=42.53 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=25.7
Q ss_pred HHHHHhhHHHHHHHh-cCcceEEEeeccCCCCccccc
Q 005753 125 RVYQAVAKPVVESVL-DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 125 ~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKTyTm 160 (679)
.||..+-. ....++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~-Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALADN-AYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHHHH-HHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 35554422 233333 799999999999999999997
No 405
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=68.16 E-value=2.8 Score=45.06 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=20.3
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.++..++.+ ...|+..|.||||||.+|
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 345555553 456889999999999998
No 406
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=68.02 E-value=22 Score=42.90 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=25.5
Q ss_pred HHHHhhHHHHHHHh-cCcceEEEeeccCCCCccccc
Q 005753 126 VYQAVAKPVVESVL-DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 126 Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKTyTm 160 (679)
||... ......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 ifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 74 VFAIA-DKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHHHH-HHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 55543 23333333 799999999999999999997
No 407
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=68.01 E-value=1e+02 Score=34.47 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQW 562 (679)
Q Consensus 549 E~~~~~l~~~~~~~ 562 (679)
|.++++|+++..++
T Consensus 54 E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 54 ELELNRLQEENTQL 67 (459)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444333333
No 408
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=67.84 E-value=2.3 Score=38.33 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.2
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4789999999999876
No 409
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=67.63 E-value=32 Score=39.71 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 005753 538 LLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLE 591 (679)
Q Consensus 538 l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~ 591 (679)
|.+.+.+++.+..++.+++.+.+++++.+...+.++..|+-.++..+.+.+.+.
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 334445677778888888888888888888888888888887777665544443
No 410
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.61 E-value=1.3e+02 Score=33.83 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005753 529 GELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASG 569 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~ 569 (679)
-+++++.+-++.+..+ + ++..++.++...+.+++.+
T Consensus 293 ~rl~elreg~e~e~~r-k----elE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 293 PRLSELREGVENETSR-K----ELEQLRVALEKAEKELEAN 328 (575)
T ss_pred hhhhhhhcchhHHHHH-H----HHHHHHHHHHHHHHHHHhc
Confidence 4455555555555544 2 4555666666555655554
No 411
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.44 E-value=23 Score=38.76 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
++++...+.++.+.+..+...++.+..++++++....++..++.++...+..|.
T Consensus 227 ~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 227 EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444445555555555555555666666666666666666666666666555554
No 412
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.34 E-value=75 Score=31.28 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=58.3
Q ss_pred hhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLK---ETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAH----QKKKLEEEIAL 596 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~---~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~----~~~~~~~~i~~ 596 (679)
...+..+|..++..|.+ --..+.++|..+..|+.|++.+.. +..-++....... ++++++-.|.+
T Consensus 26 ts~iK~qiRd~eRlLkk~~LP~~Vr~e~er~L~~Lk~ql~~~~l--------~~k~rkif~ryrkVRFFErkKaeR~irr 97 (199)
T KOG4484|consen 26 TSSIKNQIRDLERLLKKKDLPPEVREELERKLQDLKKQLDNHEL--------LAKERKIFKRYRKVRFFERKKAERSIRR 97 (199)
T ss_pred hHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777776664 133456677778888887774432 2222333333322 77899999999
Q ss_pred HHHHHHhhhhhhHHHHhhhhcccchhhhhHhhhhch
Q 005753 597 LQSQLLQISFEADEVRCIQNFFACCGLVLSLLFFPL 632 (679)
Q Consensus 597 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (679)
|++-+.+..-+.-...|.++-.+|--=+.-+-|||-
T Consensus 98 LeK~~keS~ad~kd~~i~~qlrk~kidL~YVr~fPk 133 (199)
T KOG4484|consen 98 LEKLIKESGADVKDKQIQQQLRKLKIDLEYVRFFPK 133 (199)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 999988443332233344444444333344567774
No 413
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=67.24 E-value=2.2 Score=41.08 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=13.6
Q ss_pred hcCcceEEEeeccCCCCccccc
Q 005753 139 LDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 139 l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|....++.+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 4677788999999999999987
No 414
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=66.97 E-value=1e+02 Score=28.02 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 570 NTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 570 ~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
.+.+..+.+.++......++++..+..|++++..
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555554444455555555555554443
No 415
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=66.95 E-value=70 Score=27.03 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 573 IFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 573 i~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
...++.+++....+.+.+.+.+..|..++..+
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555554433
No 416
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=66.80 E-value=3e+02 Score=33.43 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 392 RGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKLI----------AEHERQQKAFENEIERITIEAQNQIS 461 (679)
Q Consensus 392 ~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l~~e~~~L~----------~e~e~~~~~~~~e~~~~~~e~~~~l~ 461 (679)
...++.+...+.+.+. ..+.++. ...++.+.++.-+.+.+ .+.....+.++.-+.++....++++.
T Consensus 846 ~kns~k~~ei~s~lke--~r~e~~~--~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~ 921 (1259)
T KOG0163|consen 846 LKNSLKTIEILSRLKE--GREEIIS--GANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIE 921 (1259)
T ss_pred HHhhHHHHHHHHHHhc--chHHHHh--hhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 005753 462 ETERNYADALEKERLKYQKDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKE 541 (679)
Q Consensus 462 e~e~~~~~~le~e~~~~~~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~ 541 (679)
++++....+-..|....+++.+++-..-++.-+ .++.+.+-.
T Consensus 922 e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k--------------------------------------~~k~e~e~k 963 (1259)
T KOG0163|consen 922 ELERLRKIQELAEAERKRREAEEKRRREEEEKK--------------------------------------RAKAEMETK 963 (1259)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--------------------------------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 005753 542 TQLRKAAEEEVNNLKIQVA-QWKRSEASGNTEIFKLRQMLEDEAHQKK 588 (679)
Q Consensus 542 ~~~~~~~E~~~~~l~~~~~-~~~~~~~~~~~ei~~l~k~l~~~~~~~~ 588 (679)
+..+++-++.-.+.+.++. +++..++.-.++-.+.+..+|.++.+.+
T Consensus 964 RK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer~D~~ 1011 (1259)
T KOG0163|consen 964 RKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQNQLEQERRDHE 1011 (1259)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 417
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=66.64 E-value=83 Score=27.74 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKL 590 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~ 590 (679)
...+.++.++..+......++..|+.+|+.++.++..+
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777888888887777666554
No 418
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=66.40 E-value=3.6 Score=44.63 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=19.6
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.++..++.+ ...|+..|.||||||++|
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 345555554 356677799999999887
No 419
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.20 E-value=2.1e+02 Score=32.13 Aligned_cols=148 Identities=20% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 421 KSLARRLDIQLDKLIAEHERQQKAFENEIERITIEAQNQISETERNYADALEKERLKYQKDYMESIKKLEERWKINQQKQ 500 (679)
Q Consensus 421 ~~l~~~l~~e~~~L~~e~e~~~~~~~~e~~~~~~e~~~~l~e~e~~~~~~le~e~~~~~~~~~~~i~~le~~l~~~~~~~ 500 (679)
..+...|+.++..+..+...+...+..-.+.+..+...- +..++-+...-...-.-...+...|-.....+.+.+
T Consensus 344 E~ll~tlq~~iSqaq~~vq~qma~lv~a~e~i~~e~~rl-----~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~ 418 (542)
T KOG0993|consen 344 EDLLVTLQAEISQAQSEVQKQMARLVVASETIADEDSRL-----RQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLY 418 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhccccccchhHhhhhcchhhHHHHHHHH
Q ss_pred chhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005753 501 GSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQM 579 (679)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~ 579 (679)
..............+. -.....++|..|+..|++++..++.+|..+..-.++...+.....++..+++.++++
T Consensus 419 ~~~r~~~~~~l~a~eh------v~e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 419 KQRRTSLQQELDASEH------VQEDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
No 420
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=65.89 E-value=2.5 Score=42.53 Aligned_cols=16 Identities=44% Similarity=0.652 Sum_probs=14.6
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4788999999999998
No 421
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=65.77 E-value=55 Score=36.32 Aligned_cols=83 Identities=20% Similarity=0.126 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHh-hh----hcccchhhhhHhhhhchhhhh-----------------hhh
Q 005753 582 DEAHQKKKLEEEIALLQSQLLQISFEADEVRC-IQ----NFFACCGLVLSLLFFPLFPLF-----------------FSC 639 (679)
Q Consensus 582 ~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 639 (679)
+...+.+.++.++..|+-... +.-..|..-| |+ .||.-|+++...||=-+.-.. -.+
T Consensus 96 ~a~~e~~~l~~~l~~le~~~l-l~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~g~ 174 (364)
T TIGR00020 96 ELDAELKALEKKLAELELRTM-LSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGI 174 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCce
Confidence 333444555555555553322 2222232212 21 366667777666653221100 134
Q ss_pred hhhheeecccccccceeccccCcccc
Q 005753 640 VSILFKISVPHATGLLLHNVGSRGVQ 665 (679)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (679)
-++.|.|+-+.|.|+|-+..|.--||
T Consensus 175 ks~~~~i~G~~ay~~lk~E~GvHrv~ 200 (364)
T TIGR00020 175 KSVTILIKGPYAYGYLKSEQGVHRLV 200 (364)
T ss_pred EEEEEEEeccCHHHHHhhccceEEEE
Confidence 56788888899999999888876665
No 422
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=65.73 E-value=2.6e+02 Score=32.29 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhH-HHHhhhhc
Q 005753 584 AHQKKKLEEEIALLQSQLLQISFEAD-EVRCIQNF 617 (679)
Q Consensus 584 ~~~~~~~~~~i~~L~~~l~~~~~~~~-~~~~~~~~ 617 (679)
..+...+.++|..|.+.-.+.+.+|. +++-|...
T Consensus 164 ~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd 198 (475)
T PRK10361 164 AQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGD 198 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35667888888888887777777777 55666543
No 423
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=65.49 E-value=5 Score=42.98 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=26.5
Q ss_pred eeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 111 F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
-+||.+.+ |+++.+.+ ...+-.|....++-||++|+|||++.
T Consensus 12 ~~~~~~~g----~~~~~~~L----~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 12 ALLEDILG----QDEVVERL----SRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CcHHHhcC----CHHHHHHH----HHHHhCCCCceEEEECCCCCCHHHHH
Confidence 34677764 45554443 12222444345888999999999997
No 424
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=65.46 E-value=1e+02 Score=29.25 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005753 574 FKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFE 607 (679)
Q Consensus 574 ~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~ 607 (679)
...++++++..-=..-++..+...+.+|..+.++
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~e 113 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKELGEE 113 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 5566677776666677777788888887766544
No 425
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=65.39 E-value=2.5 Score=46.46 Aligned_cols=51 Identities=24% Similarity=0.411 Sum_probs=31.2
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHH-Hhc--C--cceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVES-VLD--G--YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~-~l~--G--~N~tIfaYGqTgSGKTyTm 160 (679)
.+.||.|.+-+.--+++.+.+..|+... .+. | ....|+-||++|+|||++.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 5667777665444455555554443321 111 1 1345899999999999887
No 426
>PHA00729 NTP-binding motif containing protein
Probab=65.36 E-value=5.3 Score=41.25 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=22.7
Q ss_pred hHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 131 AKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 131 ~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
++.+++.+..|--..|+.+|.+|+||||..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 455666666443357999999999999876
No 427
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=65.25 E-value=8.6 Score=43.64 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=28.1
Q ss_pred eeeccccCCCCChHHHHHHhhHHHHHH-Hhc--C--cceEEEeeccCCCCccccc
Q 005753 111 YEFDEVLTEFASQKRVYQAVAKPVVES-VLD--G--YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 111 F~FD~VF~~~asQ~~Vy~~~~~plV~~-~l~--G--~N~tIfaYGqTgSGKTyTm 160 (679)
-+|+.|.+-+.--+++.+.+..|+... .+. | ....|+-||++|||||.+.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 345555444333445555554454432 111 1 1234778999999999886
No 428
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=65.21 E-value=4.2 Score=48.99 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHH
Q 005753 555 LKIQVAQWKRSEASGNTEIFKLRQML 580 (679)
Q Consensus 555 l~~~~~~~~~~~~~~~~ei~~l~k~l 580 (679)
|+.++..++.+...+..++..|..+|
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESEL 533 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 429
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=65.16 E-value=93 Score=27.01 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=54.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNT-EIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~-ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
.-..-.+..+++.+..-++.+..+-..+..+..++.++.....-... .+..+...|...+..+..+.+....+++++..
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556677777777777777777777777777776664443322 34447778888888888888888888887654
Q ss_pred h
Q 005753 604 I 604 (679)
Q Consensus 604 ~ 604 (679)
+
T Consensus 90 L 90 (92)
T PF14712_consen 90 L 90 (92)
T ss_pred h
Confidence 3
No 430
>PTZ00121 MAEBL; Provisional
Probab=65.12 E-value=4.3e+02 Score=34.64 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHhcc
Q 005753 340 SLSALGKCINSLAE 353 (679)
Q Consensus 340 SL~aLg~vI~aL~~ 353 (679)
+...|+.|+.-|-.
T Consensus 942 ~~~~f~eC~e~lF~ 955 (2084)
T PTZ00121 942 GINKFGGCLEYLFI 955 (2084)
T ss_pred cchhHHHHHHHHHh
Confidence 34556666665543
No 431
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=65.06 E-value=1.7e+02 Score=29.93 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 528 VGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRS 565 (679)
Q Consensus 528 ~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~ 565 (679)
...+..|+..+......-..++..+..|+.++.+.+..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444333
No 432
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=64.93 E-value=4.5 Score=38.42 Aligned_cols=17 Identities=35% Similarity=0.474 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..++..|.+|||||.++
T Consensus 25 ~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 25 RDVILAAPTGSGKTLAA 41 (201)
T ss_pred CcEEEECCCCCchhHHH
Confidence 45577889999999987
No 433
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=64.85 E-value=1.1e+02 Score=27.92 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 005753 535 KKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLR 577 (679)
Q Consensus 535 ~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~ 577 (679)
.+....+.......+.++..|..++..+......+.+.+..++
T Consensus 66 ~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 66 EKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666776666666666665555555544
No 434
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=64.65 E-value=1.5e+02 Score=29.10 Aligned_cols=70 Identities=30% Similarity=0.282 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 533 EVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEAS----GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~----~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.|....+.+++.++..|.++..++....+-.+.+.. ++++...|...+.+...+...+++.-..|+.++.
T Consensus 61 ~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~ 134 (158)
T PF09744_consen 61 QLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYN 134 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHH
Confidence 444444445555555555555444443333332222 2223333333333333444455555555555544
No 435
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=64.64 E-value=2.6e+02 Score=31.96 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005753 482 YMESIKKLEERWKINQQ 498 (679)
Q Consensus 482 ~~~~i~~le~~l~~~~~ 498 (679)
....++.|.+.+..+++
T Consensus 388 ~~k~lqnLqe~la~tqk 404 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQK 404 (527)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555444443333
No 436
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=64.60 E-value=60 Score=33.33 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005753 532 TEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLE 581 (679)
Q Consensus 532 ~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~ 581 (679)
.-++.++++....-+..++....|+.|.+++..+.+.+.++-.+||.+++
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444555555555555544445445554443
No 437
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.31 E-value=2.1e+02 Score=30.78 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhhc-ccchhhhhHh
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQNF-FACCGLVLSL 627 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 627 (679)
|+++..+.+-+-++.+....+.+-+-+.=-.+++.....++-.-+.+.-.+||.-|... .-+. -.+|-++|.+
T Consensus 217 E~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~y------Qk~~~k~~~i~~L~l 290 (305)
T KOG0809|consen 217 EKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERY------QKRNKKMKVILMLTL 290 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHH------HhcCCceEehHHHHH
Confidence 45555555555555555555555555555555566666555555555555555333222 2233 3455556555
Q ss_pred hhhc
Q 005753 628 LFFP 631 (679)
Q Consensus 628 ~~~~ 631 (679)
+.|-
T Consensus 291 ~ii~ 294 (305)
T KOG0809|consen 291 LIIA 294 (305)
T ss_pred HHHH
Confidence 5443
No 438
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=64.20 E-value=11 Score=45.98 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=19.3
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..+.+|.|+.|.| +||||||-+
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeA 53 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEA 53 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHH
Confidence 44556999998888 899999977
No 439
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=63.95 E-value=4.9 Score=46.73 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=65.7
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccc---
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVS--- 186 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~--- 186 (679)
.|.||.+++....=+.+.+. +.. +...+..|+-+|.+||||++.- ++++..|....
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~-----i~~-~A~s~~pVLI~GE~GTGKe~~A---------------~~IH~~~~~~~~~~ 273 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQT-----ILL-YARSSAAVLIQGETGTGKELAA---------------QAIHREYFARHDAR 273 (538)
T ss_pred ccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCCCHHHHH---------------HHHHHhhccccccc
Confidence 36677776654332222222 222 3567889999999999998653 44444321111
Q ss_pred ---cCCCeEEEEEEEeecceeee-cCCCCC---------CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhc
Q 005753 187 ---LDTDSVTVSYLQLYMETIQD-LLDPTN---------DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHR 253 (679)
Q Consensus 187 ---~~~~~V~vS~lEIYnE~v~D-LL~~~~---------~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R 253 (679)
....-|.+.+-.+..+.+-. |..... ...-..+....|.+++.++.+....-...++++|..+.-.|
T Consensus 274 S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 274 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred CccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 11111333332222222211 111110 11123344456889999988888777778888887765444
No 440
>PRK04406 hypothetical protein; Provisional
Probab=63.82 E-value=47 Score=28.37 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
+-+..+++++.+|+..+.....-|.+|-+.+.....+...+...++.|..+|..
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666666666666666666666666666666666666555543
No 441
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=63.78 E-value=5.5 Score=47.46 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=50.0
Q ss_pred eeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCC--CC-----CCcchHHHHHHHHHh
Q 005753 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEE--DP-----ATRGIMVRAMEDILA 183 (679)
Q Consensus 111 F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~--~~-----~~~GIipra~~~LF~ 183 (679)
|....=|.|.-+|..-+..+ ++.+-+|.... ..+|.|||||||||...-.. .+ .+.-..-....++-.
T Consensus 2 f~~~~~~~~~~~Q~~ai~~l----~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAKL----VEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHHH----HHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 44445578889998888765 44445564232 37899999999998321110 00 111122223333322
Q ss_pred ccccCCCeEEEEEEEeecceee
Q 005753 184 GVSLDTDSVTVSYLQLYMETIQ 205 (679)
Q Consensus 184 ~i~~~~~~V~vS~lEIYnE~v~ 205 (679)
.+....-...|||+.-|.-..|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 2222223467899998866543
No 442
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=63.67 E-value=5 Score=40.87 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=14.2
Q ss_pred cceEEEeeccCCCCccccc
Q 005753 142 YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm 160 (679)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5668999999999999885
No 443
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=63.65 E-value=1.1e+02 Score=31.06 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 529 GELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
..+..++..+..........++++...+.+.+-+...+..+..++..++..+...
T Consensus 52 ~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 52 SQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3344444444433333344556666666555556666666666666666666654
No 444
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=63.64 E-value=38 Score=33.65 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 545 RKAAEEEVNNLKIQVAQWKRSEASGNTEIFK-----LRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 545 ~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~-----l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
.+.+++..+.+..++++++..++..+.++.. -++++++......++|..|..++..
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555666666666665555444 3466777767777777777776554
No 445
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.62 E-value=2.1e+02 Score=30.49 Aligned_cols=31 Identities=6% Similarity=0.119 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 569 GNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 569 ~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
..+++.+..+++.+.+.....+.+....|+.
T Consensus 212 ~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 212 LEEELKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 446
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=63.56 E-value=29 Score=39.56 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 579 MLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 579 ~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
+.++..+..+++++++..|+.++.
T Consensus 98 q~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 98 QRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333334444566777777777764
No 447
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=63.47 E-value=2e+02 Score=30.30 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=44.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
..+-+|++|+-.|...+.-.+.+-....+|-.=+.++....+..+.-|.=|+.+|+..+ ++|.+|++.+++.+
T Consensus 233 ~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr-------~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 233 ASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETR-------KEIQRLKKGLEQVS 305 (330)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 44556777777666555444444444455555566666777777777777777776654 45566666655443
No 448
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.46 E-value=2e+02 Score=30.25 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 531 LTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEAS-----------GNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 531 i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~-----------~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
++.|+-.+-.-.....++.+++.+|+.--+.++...-. ++..| +.--+|+.+..+++.+-+....|+.
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAI-ErnAfLESELdEke~llesvqRLkd 171 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAI-ERNAFLESELDEKEVLLESVQRLKD 171 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444455555555555544444332221 22222 2234666777788888888888888
Q ss_pred HHHhhhhhhH
Q 005753 600 QLLQISFEAD 609 (679)
Q Consensus 600 ~l~~~~~~~~ 609 (679)
+.--+.|+-.
T Consensus 172 Eardlrqela 181 (333)
T KOG1853|consen 172 EARDLRQELA 181 (333)
T ss_pred HHHHHHHHHH
Confidence 8655555543
No 449
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=63.39 E-value=1.4e+02 Score=30.73 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
.++..|+.+..++-...-....++.+|+.++...
T Consensus 175 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 175 EELRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444333344444444333333
No 450
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.37 E-value=93 Score=26.39 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 571 TEIFKLRQMLEDEAHQKKKLEEEIALL 597 (679)
Q Consensus 571 ~ei~~l~k~l~~~~~~~~~~~~~i~~L 597 (679)
++...|+.+.+..+.+.....+.|..|
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444
No 451
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=63.33 E-value=80 Score=26.55 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 528 VGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 528 ~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
+.++..|+.+|..-..+...++.....|..+=+.....+...-.++.+|+.+++..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L 59 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEAL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444455555555554444444444444444444444444433
No 452
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=63.21 E-value=2.8 Score=41.90 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=12.8
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
-++.+|.||||||.+|
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5789999999999998
No 453
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.15 E-value=7.8 Score=43.26 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=16.4
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467899999999999998
No 454
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=63.13 E-value=4.1 Score=44.29 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=19.3
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.++..++.+ ...|+..|.||||||.+|
T Consensus 135 ~~L~~~v~~-~~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDS-RLNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 334445443 235789999999999998
No 455
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=62.85 E-value=24 Score=39.39 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 550 EEVNNLKIQVAQWKRSEA----SGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~----~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
..+.+|+.|+.+|.-..+ ....||++|++.|+++..-+-.++.+|..|++-+
T Consensus 569 ~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~ 624 (627)
T KOG4348|consen 569 NSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAV 624 (627)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHh
Confidence 345566666666644433 3456899999999999999999999999998764
No 456
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=62.85 E-value=5 Score=39.62 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=19.4
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+++..++.. ...+.-.|+||||||.+|
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 344545543 345788899999999987
No 457
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.72 E-value=70 Score=36.52 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=38.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEAS-GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~-~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
+.+.-+..++.+++++++......+.+.++.++|+.+.......... .+.+-.+++++.+..+.++.++...+..|+.+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444444444444443333222221 12223334444444444555666666666666
Q ss_pred HH
Q 005753 601 LL 602 (679)
Q Consensus 601 l~ 602 (679)
|.
T Consensus 139 l~ 140 (472)
T TIGR03752 139 LA 140 (472)
T ss_pred Hh
Confidence 53
No 458
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=62.66 E-value=5.4 Score=42.52 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=16.8
Q ss_pred cCc-ceEEEeeccCCCCccccc
Q 005753 140 DGY-NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~-N~tIfaYGqTgSGKTyTm 160 (679)
.|. ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 453 456777999999999987
No 459
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=62.57 E-value=4.8 Score=43.96 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=20.3
Q ss_pred HHHHHhcCcceEEEeeccCCCCccccc
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
++..++.+. +.|+..|-||||||.++
T Consensus 165 ~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 165 FLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 344455555 78999999999999997
No 460
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.57 E-value=1.6e+02 Score=28.87 Aligned_cols=8 Identities=38% Similarity=0.464 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005753 592 EEIALLQS 599 (679)
Q Consensus 592 ~~i~~L~~ 599 (679)
..|..|+.
T Consensus 159 ~~i~~l~r 166 (177)
T PF13870_consen 159 KEIKELER 166 (177)
T ss_pred HHHHHHHH
Confidence 33333333
No 461
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=62.51 E-value=5.1 Score=42.49 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=26.4
Q ss_pred cCCCCChHHHHHHhhHHHHHHHhc--CcceEEEeeccCCCCccccc
Q 005753 117 LTEFASQKRVYQAVAKPVVESVLD--GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 117 F~~~asQ~~Vy~~~~~plV~~~l~--G~N~tIfaYGqTgSGKTyTm 160 (679)
|++...|+++-+.+ ..++..... +....++-||++|+|||+..
T Consensus 3 ~~~~iG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 3 LAEFIGQEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HHHHcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 33445677777664 333433321 22234677999999999887
No 462
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=62.49 E-value=19 Score=39.46 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKL 576 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l 576 (679)
..+.++.+++.++..++...+....+...+
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l 268 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQEL 268 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333333
No 463
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=62.12 E-value=1.2e+02 Score=27.06 Aligned_cols=51 Identities=14% Similarity=0.049 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005753 528 VGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQ 578 (679)
Q Consensus 528 ~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k 578 (679)
+..+..+.....+..+..-+.+.....+..++..+...+.+..+.+.+|+.
T Consensus 30 E~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 30 EQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333344444444444444455555555555555555555555555555444
No 464
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=62.12 E-value=2.8 Score=37.66 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 005753 146 VMAYGQTGTGKTYTL 160 (679)
Q Consensus 146 IfaYGqTgSGKTyTm 160 (679)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999988
No 465
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=61.85 E-value=8.6 Score=40.85 Aligned_cols=17 Identities=53% Similarity=0.767 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|.-.|+||+|||+|+
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35667799999999998
No 466
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=61.83 E-value=5.9 Score=47.44 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=26.5
Q ss_pred HHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 125 RVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 125 ~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.||...-.-.-.-.-.|.|-||+..|.+|||||.|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 466555333323334789999999999999999996
No 467
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=61.81 E-value=37 Score=35.89 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 533 EVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFK----------LRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~----------l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.+++++...+++...+...+..|++++.+.+..++.++.--.. .........+.+++-+++|+.||+++.
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666666666666665555554221111 111122344556666677777777665
Q ss_pred h
Q 005753 603 Q 603 (679)
Q Consensus 603 ~ 603 (679)
+
T Consensus 257 ~ 257 (259)
T PF08657_consen 257 E 257 (259)
T ss_pred h
Confidence 4
No 468
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=61.72 E-value=76 Score=35.28 Aligned_cols=85 Identities=24% Similarity=0.161 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-hhh----hcccchhhhhHhhhhchhhhh-----------------hh
Q 005753 581 EDEAHQKKKLEEEIALLQSQLLQISFEADEVR-CIQ----NFFACCGLVLSLLFFPLFPLF-----------------FS 638 (679)
Q Consensus 581 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~-----------------~~ 638 (679)
++...+...++.++..|+.+.. +.-..|..- +|+ .||.-|+++..-||=-+.-.. -.
T Consensus 95 ~~a~~e~~~l~~~l~~le~~~l-l~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~gg 173 (367)
T PRK00578 95 AEAEAELKALEKKLAALELERL-LSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAG 173 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCC
Confidence 3444445556666666654422 222233222 222 467777787776653221110 13
Q ss_pred hhhhheeecccccccceeccccCccccC
Q 005753 639 CVSILFKISVPHATGLLLHNVGSRGVQN 666 (679)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (679)
+-++.|+|+=+.|.|+|-+..|.--||.
T Consensus 174 ~ks~~~~i~G~~a~~~lk~E~GvHrvqr 201 (367)
T PRK00578 174 IKSATFKIKGPYAYGYLKSETGVHRLVR 201 (367)
T ss_pred eeEEEEEEeccCHHHHHhhccceEEEEe
Confidence 4567888888889999988888776663
No 469
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=61.69 E-value=54 Score=34.32 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 569 GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 569 ~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
..+++.+++++|.+.+.+.++++.++..|..+..
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677888888898888888888888888888865
No 470
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.54 E-value=1.9e+02 Score=29.33 Aligned_cols=6 Identities=33% Similarity=0.579 Sum_probs=2.1
Q ss_pred HHHHHH
Q 005753 550 EEVNNL 555 (679)
Q Consensus 550 ~~~~~l 555 (679)
.+..+|
T Consensus 121 ~ErdeL 126 (201)
T PF13851_consen 121 QERDEL 126 (201)
T ss_pred HHHHHH
Confidence 333333
No 471
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.39 E-value=45 Score=32.63 Aligned_cols=21 Identities=24% Similarity=0.242 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005753 474 ERLKYQKDYMESIKKLEERWK 494 (679)
Q Consensus 474 e~~~~~~~~~~~i~~le~~l~ 494 (679)
+....+++|.+.|..-.+..+
T Consensus 51 WNs~VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 51 WNAYVRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444566778887776655544
No 472
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=61.33 E-value=42 Score=30.64 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
+|-.++.+++..+..+.+++..+++.+....++-..+.-+...|.+.|.+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555556666666666665666666666666666655443
No 473
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=61.30 E-value=1.4e+02 Score=27.57 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 572 EIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 572 ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.-.+..|.|+-...+.++++..|+.++++..
T Consensus 70 Ar~nV~kRlefI~~Eikr~e~~i~d~q~e~~ 100 (120)
T KOG3478|consen 70 ARTNVGKRLEFISKEIKRLENQIRDSQEEFE 100 (120)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666666666666666666666643
No 474
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=61.21 E-value=5.7 Score=46.00 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=63.7
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccCC
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLDT 189 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~~ 189 (679)
.+.||.+.+....=..+.+.+ .. +...+..|+-+|.+||||++.- ++++..-.. ...
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~-----~~-~a~~~~pvli~Ge~GtGK~~lA---------------~~ih~~s~r--~~~ 248 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQA-----RV-VARSNSTVLLRGESGTGKELIA---------------KAIHYLSPR--AKR 248 (534)
T ss_pred cCccCceEECCHHHHHHHHHH-----HH-HhCcCCCEEEECCCCccHHHHH---------------HHHHHhCCC--CCC
Confidence 478999988755544554443 22 2367888999999999998774 222221110 111
Q ss_pred CeEEEEEEEeecceeee-cCCCCC--------CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhh
Q 005753 190 DSVTVSYLQLYMETIQD-LLDPTN--------DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEA 251 (679)
Q Consensus 190 ~~V~vS~lEIYnE~v~D-LL~~~~--------~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~ 251 (679)
.-|.+.+-.+..+.+-. |+...+ ...-..+....|.+++.++......-...++++|..+.-
T Consensus 249 pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~ 319 (534)
T TIGR01817 249 PFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEF 319 (534)
T ss_pred CeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcE
Confidence 11333333332222111 111110 011112233457788888877776666777788876553
No 475
>PRK10869 recombination and repair protein; Provisional
Probab=61.08 E-value=3.3e+02 Score=31.97 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 529 GELTEVKKLLLKETQLRKAAE---EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E---~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
.++.+++++|.....++..|= +++-.+.+++.+--..++...+.+.+|+++++....+..++.+.++...++
T Consensus 296 ~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 296 NRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444442 333333333333333334445556666666666655555555555555555
No 476
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=61.02 E-value=11 Score=39.11 Aligned_cols=43 Identities=28% Similarity=0.429 Sum_probs=28.2
Q ss_pred cCCCCChHHHHHHhhHHHHHHHhc-C-cceEEEeeccCCCCccccc
Q 005753 117 LTEFASQKRVYQAVAKPVVESVLD-G-YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 117 F~~~asQ~~Vy~~~~~plV~~~l~-G-~N~tIfaYGqTgSGKTyTm 160 (679)
|++...|+.+-... +.+++.+.. | .=..++-||+.|.|||..-
T Consensus 23 L~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 45667789998774 666777653 2 3346888999999998553
No 477
>PRK11281 hypothetical protein; Provisional
Probab=61.02 E-value=4.6e+02 Score=33.62 Aligned_cols=11 Identities=9% Similarity=-0.127 Sum_probs=5.2
Q ss_pred ChHHhHHHHHH
Q 005753 391 HRGETASTILF 401 (679)
Q Consensus 391 ~~~ETlsTL~f 401 (679)
++++|++.|+=
T Consensus 64 ~l~~tL~~L~q 74 (1113)
T PRK11281 64 DLEQTLALLDK 74 (1113)
T ss_pred HHHHHHHHHHH
Confidence 34555554443
No 478
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.95 E-value=2.1e+02 Score=32.28 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 436 AEHERQQKAFENEIERITIEAQNQISETERNYADALEKERLKYQKDY 482 (679)
Q Consensus 436 ~e~e~~~~~~~~e~~~~~~e~~~~l~e~e~~~~~~le~e~~~~~~~~ 482 (679)
+.+.+|.+.+++|+++....+..-+.+-.+..+...-+++....+..
T Consensus 243 ~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~ 289 (439)
T KOG2911|consen 243 AKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDL 289 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhH
Confidence 33445555666666666655555555544444433333333333333
No 479
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=60.82 E-value=5.8 Score=39.09 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=17.3
Q ss_pred HHHhcCcceEEEeeccCCCCccccc
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+.++.|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 44445777 577889999999873
No 480
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=60.78 E-value=2.9e+02 Score=31.16 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=39.5
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHhhhh
Q 005753 562 WKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL--QISFEADEVRCIQN 616 (679)
Q Consensus 562 ~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~~~~~~ 616 (679)
|-.+...++.-+..|+..|++.+.....+......|+.+|+ .-+.-.|..+|++.
T Consensus 349 L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL~ID~ekcm~m 405 (421)
T KOG2685|consen 349 LVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKANSLFIDREKCMLM 405 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhccHHHHHHH
Confidence 34555556667777888888888888888888888999887 44556665566554
No 481
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.66 E-value=2.9e+02 Score=31.85 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005753 419 DYKSLARRLDIQLDKLI 435 (679)
Q Consensus 419 ~~~~l~~~l~~e~~~L~ 435 (679)
-.++|.+|++.+...+.
T Consensus 335 GF~dL~~R~K~Q~q~~~ 351 (508)
T KOG3091|consen 335 GFEDLRQRLKVQDQEVK 351 (508)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45667777766655443
No 482
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=60.65 E-value=2.2e+02 Score=29.80 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005753 542 TQLRKAAEEEVNNLKIQV 559 (679)
Q Consensus 542 ~~~~~~~E~~~~~l~~~~ 559 (679)
......++..+..|+.++
T Consensus 148 ~~~~~~ae~~v~~Lek~l 165 (239)
T PF05276_consen 148 ARIYNEAEQRVQQLEKKL 165 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344455555555443
No 483
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=60.58 E-value=2.1e+02 Score=29.60 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 459 QISETERNYADALEKERLKYQKDYMESIKKLEERWKINQQK 499 (679)
Q Consensus 459 ~l~e~e~~~~~~le~e~~~~~~~~~~~i~~le~~l~~~~~~ 499 (679)
+..+.+.+-..+|..-...+-.+...++..++.......+.
T Consensus 67 ~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~ 107 (225)
T COG1842 67 RAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAE 107 (225)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444555555554444333
No 484
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=60.38 E-value=4.3e+02 Score=33.11 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=12.3
Q ss_pred EeeccCCCCccccc
Q 005753 147 MAYGQTGTGKTYTL 160 (679)
Q Consensus 147 faYGqTgSGKTyTm 160 (679)
|-.|+.|||||...
T Consensus 46 mIiGpNGSGKSSiV 59 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIV 59 (1072)
T ss_pred eEECCCCCCchHHH
Confidence 67899999999875
No 485
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=60.19 E-value=6.6 Score=45.32 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=63.8
Q ss_pred eeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccCCCe
Q 005753 112 EFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLDTDS 191 (679)
Q Consensus 112 ~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~~~~ 191 (679)
.|+.+.+....=+.+++.+ .. +...+..|+-+|.+||||++.- +++...... ....-
T Consensus 185 ~~~~iig~s~~~~~~~~~i-----~~-~a~~~~pVlI~Ge~GtGK~~~A---------------~~ih~~s~r--~~~p~ 241 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEI-----EV-VAASDLNVLILGETGVGKELVA---------------RAIHAASPR--ADKPL 241 (509)
T ss_pred cCCceeecCHHHHHHHHHH-----HH-HhCCCCcEEEECCCCccHHHHH---------------HHHHHhCCc--CCCCe
Confidence 6777777654444444443 22 3567889999999999998774 233322111 11112
Q ss_pred EEEEEEEeecceee-ecCCCCC--------CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhh
Q 005753 192 VTVSYLQLYMETIQ-DLLDPTN--------DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEA 251 (679)
Q Consensus 192 V~vS~lEIYnE~v~-DLL~~~~--------~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~ 251 (679)
+.+.+-.+..+.+- .|+...+ ...-..+....|.+++.++......-...++++|+.+.-
T Consensus 242 v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~ 310 (509)
T PRK05022 242 VYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEI 310 (509)
T ss_pred EEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCE
Confidence 33443333322111 1221110 111122334568888888888887777777788776554
No 486
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=60.14 E-value=1.3e+02 Score=28.56 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005753 527 IVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 527 ~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~ 606 (679)
+...+..+...........-..+.++..++.++.+...++..+..+..++.+.+... ...-.-..=...|+....+++.
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~ee 110 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEE 110 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444556666666666666666666666666666666655 4444444444555555555555
Q ss_pred hhHHH
Q 005753 607 EADEV 611 (679)
Q Consensus 607 ~~~~~ 611 (679)
+.+.+
T Consensus 111 eSe~l 115 (150)
T PF07200_consen 111 ESEEL 115 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 487
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=60.06 E-value=1e+02 Score=28.98 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=43.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKK 589 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~ 589 (679)
...+..++..++-.+.+.+......+.+...+.....+...+.+....+|.+++.+|+.++..+..
T Consensus 48 ~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~ 113 (139)
T PF05615_consen 48 YERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666777777777777777777777788888888777554433
No 488
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=60.03 E-value=76 Score=36.19 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
|+-.|.+..+...++.+.+..++.++++.+..-+.+...+.-++...++++..+-+.++++|.+...+|.+..+ .+|
T Consensus 29 ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~---i~d 105 (604)
T KOG3564|consen 29 EFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL---IKD 105 (604)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHH
Confidence 34455555556566666777778888888888888888888899999999999988889999988888888643 445
Q ss_pred HHHh
Q 005753 610 EVRC 613 (679)
Q Consensus 610 ~~~~ 613 (679)
.++|
T Consensus 106 ~l~~ 109 (604)
T KOG3564|consen 106 MLKC 109 (604)
T ss_pred HHhc
Confidence 5554
No 489
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=59.85 E-value=93 Score=34.05 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=17.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKR 564 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~ 564 (679)
.++..+.-..+.++++...+.+...-+.+..-+.++.++..
T Consensus 13 fq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~ 53 (330)
T PF07851_consen 13 FQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKK 53 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333333333333
No 490
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=59.70 E-value=26 Score=36.98 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 570 NTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 570 ~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
........+.|+.+.++++.||.++..|+
T Consensus 231 ~~~~~~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 231 SEDSVDTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445556678888888889999888774
No 491
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=59.63 E-value=3.7e+02 Score=32.12 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 005753 430 QLDKLIAEHERQ 441 (679)
Q Consensus 430 e~~~L~~e~e~~ 441 (679)
++.++..|.+.+
T Consensus 251 Q~rk~meEreK~ 262 (811)
T KOG4364|consen 251 QLRKNMEEREKE 262 (811)
T ss_pred HHHHhHHHHHHH
Confidence 333344444333
No 492
>PF15294 Leu_zip: Leucine zipper
Probab=59.62 E-value=2.5e+02 Score=30.08 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 005753 427 LDIQLDKLIAEHE 439 (679)
Q Consensus 427 l~~e~~~L~~e~e 439 (679)
+..++++|..|++
T Consensus 130 l~kEi~rLq~EN~ 142 (278)
T PF15294_consen 130 LNKEIDRLQEENE 142 (278)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555554443
No 493
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=59.49 E-value=2.5e+02 Score=30.00 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhhcccchhhhhHhhhhc
Q 005753 552 VNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQNFFACCGLVLSLLFFP 631 (679)
Q Consensus 552 ~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (679)
+.+...++.++.......++....+.....+.-...-.++.+|..+.-.+.-|+-+-...-.-++--.-|+.++ |+.|-
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~-Llil~ 268 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYL-LLILL 268 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhH-HHHHH
Confidence 46667777788888888888888888888777788888899999888888777666554433334344455544 33334
Q ss_pred hhhhhhhhhh
Q 005753 632 LFPLFFSCVS 641 (679)
Q Consensus 632 ~~~~~~~~~~ 641 (679)
.|-+|++...
T Consensus 269 vv~lfv~l~~ 278 (283)
T COG5325 269 VVLLFVSLIK 278 (283)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 494
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.47 E-value=1.8e+02 Score=28.51 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 005753 433 KLIAEHERQQKAFEN 447 (679)
Q Consensus 433 ~L~~e~e~~~~~~~~ 447 (679)
+-+.+-..|..+++.
T Consensus 21 rhIReG~TQL~AFeE 35 (161)
T TIGR02894 21 RHIREGSTQLSAFEE 35 (161)
T ss_pred HHHhcchHHHHHHHH
Confidence 334444445555543
No 495
>PRK10698 phage shock protein PspA; Provisional
Probab=59.40 E-value=2.2e+02 Score=29.34 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 419 DYKSLARRLDIQLDKLIAEHERQQKAF---ENEIERITIEAQNQISETERNYADALEKERLKYQKDYMESIKKLEERWKI 495 (679)
Q Consensus 419 ~~~~l~~~l~~e~~~L~~e~e~~~~~~---~~e~~~~~~e~~~~l~e~e~~~~~~le~e~~~~~~~~~~~i~~le~~l~~ 495 (679)
|+..+++.+..++..-..+........ ...+++...+.+..+.+.+..-..++.+=+..+-+....+-....+.+..
T Consensus 24 DP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~ 103 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIAT 103 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHH
Q 005753 496 NQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEE------------------EVNNLKI 557 (679)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~------------------~~~~l~~ 557 (679)
.+..+.......+. ....+..+..++.+.+.+-.....+....+. .+..+++
T Consensus 104 l~~~~~~~~~~~~~----------L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ 173 (222)
T PRK10698 104 LEHEVTLVDETLAR----------MKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFER 173 (222)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q ss_pred HHHHHHHHHhhchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005753 558 QVAQWKRSEASGNTEIFK-LRQMLEDEAHQKKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 558 ~~~~~~~~~~~~~~ei~~-l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~ 606 (679)
++++.+..-+....--.. +..++... +.-..++++...|+.++..-++
T Consensus 174 ki~~~Ea~aea~~~~~~~~l~~e~~~l-e~~~~ve~ELa~LK~~~~~~~~ 222 (222)
T PRK10698 174 RIDQMEAEAESHGFGKQKSLDQQFAEL-KADDEISEQLAALKAKMKQDNQ 222 (222)
T ss_pred HHHHHHHHHhHhhccCCCCHHHHHHHh-hccchHHHHHHHHHHHhcccCC
No 496
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=59.38 E-value=44 Score=29.36 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 521 KDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVA------QWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEI 594 (679)
Q Consensus 521 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~------~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i 594 (679)
++++..++.-....-....-..+...++.++++-|++|++ .+..+.-.+.+++..++... ..-+++-+-.+|
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~ei 79 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEI 79 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHH
Q ss_pred HHHHHHH
Q 005753 595 ALLQSQL 601 (679)
Q Consensus 595 ~~L~~~l 601 (679)
+.|+.++
T Consensus 80 s~L~~~l 86 (86)
T PF12711_consen 80 SELRDQL 86 (86)
T ss_pred HHHHhhC
No 497
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=59.23 E-value=1.1e+02 Score=25.94 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 533 EVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.+...|..--..=+++..+-..|..+.-.+.....++.+.+.++.+.+.......+..+.++..|+..+..++
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRAE 74 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 498
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=59.06 E-value=8.6 Score=40.92 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 126 VYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 126 Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
|+-..+.|++ ..+.--+..|--||+|++|||.++
T Consensus 177 l~~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 177 LCAAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
No 499
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.00 E-value=4e+02 Score=32.33 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHH
Q 005753 454 IEAQNQISETERNYADALEKERLKYQ-KDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELT 532 (679)
Q Consensus 454 ~e~~~~l~e~e~~~~~~le~e~~~~~-~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 532 (679)
...+..-.+..-+...+++-.+..+. ....-.-+..--.+...-..+...+..++.
T Consensus 272 aDYMRhANeRR~~~~~al~~R~e~~~sr~~~~~~q~r~v~~srE~ael~~~E~~LE~----------------------- 328 (1480)
T COG3096 272 ADYMRHANERRVHLDQALEFRRELYTSRQQLAAEQYRHVDMSRELAELNGAEGDLEA----------------------- 328 (1480)
T ss_pred HHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhh-----------------------
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhh
Q 005753 533 EVKKLLLKETQLRKAA--EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL--QISFEA 608 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~--E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~--~~~~~~ 608 (679)
.++.......-...++ ++++..+++.++++.-.++....-+++.-..+++....-+..|.++..|+++|+ +-..|+
T Consensus 329 D~Q~A~DhLnLV~~AlR~QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~ 408 (1480)
T COG3096 329 DYQAASDHLNLVQTALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDV 408 (1480)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHhhh
Q 005753 609 DEVRCIQ 615 (679)
Q Consensus 609 ~~~~~~~ 615 (679)
-++|.|+
T Consensus 409 QQTRAlQ 415 (1480)
T COG3096 409 QQTRAIQ 415 (1480)
T ss_pred HHHHHHH
No 500
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.78 E-value=64 Score=33.91 Aligned_cols=76 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVA------------------------------------------- 560 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~------------------------------------------- 560 (679)
++++.+++.++++++++.+++-+.+|+.+........
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred ----------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 561 ----------------QWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 561 ----------------~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
+|+.++.....++..|+.+++..+.+--+|.|+|+=|++
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Done!