Query 005753
Match_columns 679
No_of_seqs 431 out of 2211
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:31:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 1.9E-91 6.3E-96 755.9 29.3 344 62-434 9-359 (365)
2 3b6u_A Kinesin-like protein KI 100.0 1.4E-90 4.7E-95 749.7 27.6 345 61-427 18-371 (372)
3 1goj_A Kinesin, kinesin heavy 100.0 9.6E-90 3.3E-94 740.6 31.8 335 63-422 5-344 (355)
4 3bfn_A Kinesin-like protein KI 100.0 2.7E-90 9.1E-95 749.9 24.3 338 60-423 17-362 (388)
5 1x88_A Kinesin-like protein KI 100.0 5E-90 1.7E-94 744.3 26.1 335 63-416 7-358 (359)
6 2vvg_A Kinesin-2; motor protei 100.0 9.6E-90 3.3E-94 738.8 28.1 332 63-420 3-347 (350)
7 2wbe_C Bipolar kinesin KRP-130 100.0 1.7E-89 5.7E-94 743.1 28.3 340 61-419 20-372 (373)
8 3cob_A Kinesin heavy chain-lik 100.0 3.3E-89 1.1E-93 738.8 30.3 342 61-434 2-350 (369)
9 1bg2_A Kinesin; motor protein, 100.0 5.6E-89 1.9E-93 727.0 27.6 316 63-408 6-325 (325)
10 2owm_A Nckin3-434, related to 100.0 8.9E-89 3.1E-93 751.2 29.5 333 60-417 34-422 (443)
11 2zfi_A Kinesin-like protein KI 100.0 3.3E-88 1.1E-92 731.8 29.6 333 63-416 3-362 (366)
12 1t5c_A CENP-E protein, centrom 100.0 4.5E-88 1.5E-92 726.0 28.3 331 63-420 3-340 (349)
13 2h58_A Kinesin-like protein KI 100.0 2.9E-87 9.8E-92 715.2 28.6 320 62-409 2-329 (330)
14 4a14_A Kinesin, kinesin-like p 100.0 3.3E-87 1.1E-91 719.3 27.8 325 63-406 10-344 (344)
15 3lre_A Kinesin-like protein KI 100.0 4.9E-87 1.7E-91 720.0 27.9 324 60-408 6-355 (355)
16 2rep_A Kinesin-like protein KI 100.0 1.3E-86 4.4E-91 720.2 28.1 325 60-408 18-376 (376)
17 3nwn_A Kinesin-like protein KI 100.0 6.9E-87 2.4E-91 718.8 24.2 326 61-408 21-359 (359)
18 1f9v_A Kinesin-like protein KA 100.0 3.3E-86 1.1E-90 711.5 27.2 320 63-413 2-346 (347)
19 3t0q_A AGR253WP; kinesin, alph 100.0 5.1E-86 1.7E-90 711.0 27.6 319 62-411 3-347 (349)
20 3gbj_A KIF13B protein; kinesin 100.0 6.3E-86 2.2E-90 711.0 27.9 321 64-407 1-349 (354)
21 2heh_A KIF2C protein; kinesin, 100.0 1.4E-85 4.9E-90 712.7 28.7 319 63-411 50-385 (387)
22 2nr8_A Kinesin-like protein KI 100.0 6.1E-86 2.1E-90 711.2 24.1 320 60-408 19-358 (358)
23 1ry6_A Internal kinesin; kines 100.0 2.1E-85 7.2E-90 707.5 27.2 324 65-416 1-339 (360)
24 1v8k_A Kinesin-like protein KI 100.0 2.6E-85 8.8E-90 714.8 27.3 320 63-412 70-406 (410)
25 4etp_A Kinesin-like protein KA 100.0 1.4E-84 4.7E-89 711.7 27.5 322 62-413 57-402 (403)
26 3dc4_A Kinesin-like protein NO 100.0 3.7E-84 1.3E-88 693.9 25.5 307 63-410 21-337 (344)
27 3u06_A Protein claret segregat 100.0 3.9E-83 1.3E-87 700.4 26.6 316 62-411 57-385 (412)
28 4h1g_A Maltose binding protein 100.0 7.8E-78 2.7E-82 704.5 26.5 320 61-409 371-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 7.4E-32 2.5E-36 238.4 5.0 98 334-431 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 1.6E-29 5.6E-34 230.4 10.3 97 338-434 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 5.2E-25 1.8E-29 225.4 8.7 262 62-413 22-294 (298)
32 3oja_B Anopheles plasmodium-re 96.9 0.023 8E-07 64.3 18.4 73 533-605 506-578 (597)
33 3vkg_A Dynein heavy chain, cyt 96.8 0.11 3.6E-06 69.5 25.4 16 145-160 1306-1321(3245)
34 3vkg_A Dynein heavy chain, cyt 96.7 0.2 6.7E-06 67.0 26.2 56 547-602 2039-2094(3245)
35 2v71_A Nuclear distribution pr 96.5 0.36 1.2E-05 46.9 20.5 67 530-607 110-176 (189)
36 1i84_S Smooth muscle myosin he 96.4 0.01 3.4E-07 73.2 11.4 20 140-159 166-185 (1184)
37 3o0z_A RHO-associated protein 96.2 0.51 1.7E-05 44.9 19.0 46 525-570 93-138 (168)
38 2dfs_A Myosin-5A; myosin-V, in 96.2 0.045 1.5E-06 66.7 15.0 20 140-159 153-172 (1080)
39 1i84_S Smooth muscle myosin he 96.1 0.022 7.5E-07 70.2 12.0 36 171-206 431-472 (1184)
40 2fxo_A Myosin heavy chain, car 96.0 0.37 1.3E-05 44.0 16.8 81 524-604 43-123 (129)
41 2ocy_A RAB guanine nucleotide 95.5 0.35 1.2E-05 45.4 14.8 76 524-605 53-128 (154)
42 3oja_B Anopheles plasmodium-re 95.3 0.23 7.9E-06 56.0 15.6 78 525-602 505-582 (597)
43 3na7_A HP0958; flagellar bioge 95.2 3 0.0001 42.1 22.3 70 532-601 93-166 (256)
44 3o0z_A RHO-associated protein 94.9 2.8 9.5E-05 39.8 21.7 74 525-605 65-138 (168)
45 2dfs_A Myosin-5A; myosin-V, in 94.8 0.38 1.3E-05 58.6 16.2 36 171-206 405-445 (1080)
46 2eqb_B RAB guanine nucleotide 94.4 0.68 2.3E-05 40.1 12.3 74 525-604 22-95 (97)
47 1c1g_A Tropomyosin; contractIl 94.3 4.3 0.00015 39.5 26.8 13 589-601 220-232 (284)
48 3ec2_A DNA replication protein 94.2 0.014 4.7E-07 55.4 1.5 51 109-160 5-55 (180)
49 3u1c_A Tropomyosin alpha-1 cha 94.1 0.83 2.8E-05 39.9 12.7 77 529-605 23-99 (101)
50 2v71_A Nuclear distribution pr 93.9 5 0.00017 38.9 20.3 66 530-595 89-154 (189)
51 3u59_A Tropomyosin beta chain; 93.5 1.2 4.2E-05 38.7 12.7 77 529-605 23-99 (101)
52 2w58_A DNAI, primosome compone 93.1 0.037 1.3E-06 53.2 2.5 51 109-160 20-71 (202)
53 2efr_A General control protein 92.8 6.3 0.00022 37.0 22.2 99 482-590 40-138 (155)
54 3hnw_A Uncharacterized protein 92.7 0.81 2.8E-05 42.3 10.7 58 545-602 77-134 (138)
55 3ol1_A Vimentin; structural ge 92.5 1.9 6.5E-05 38.7 12.7 37 568-604 66-102 (119)
56 2qgz_A Helicase loader, putati 92.4 0.053 1.8E-06 56.6 2.7 50 110-160 120-169 (308)
57 2efr_A General control protein 92.0 8.1 0.00028 36.3 19.0 77 526-602 53-129 (155)
58 3ol1_A Vimentin; structural ge 91.8 3.8 0.00013 36.7 13.9 101 480-600 16-116 (119)
59 2fxo_A Myosin heavy chain, car 91.5 3.2 0.00011 37.6 13.2 80 523-602 14-93 (129)
60 3ghg_A Fibrinogen alpha chain; 91.4 1.4 4.8E-05 48.6 12.3 35 526-560 114-148 (562)
61 3ghg_A Fibrinogen alpha chain; 91.3 3.2 0.00011 45.8 14.9 9 647-655 255-263 (562)
62 3hnw_A Uncharacterized protein 91.3 2.3 8E-05 39.2 12.1 73 515-594 61-133 (138)
63 3u1c_A Tropomyosin alpha-1 cha 90.9 5.9 0.0002 34.4 13.7 90 526-615 6-96 (101)
64 3i00_A HIP-I, huntingtin-inter 90.8 3 0.0001 37.6 12.0 27 537-563 93-119 (120)
65 2v4h_A NF-kappa-B essential mo 90.7 3.6 0.00012 36.2 12.0 77 530-606 25-104 (110)
66 2e7s_A RAB guanine nucleotide 90.2 0.2 6.7E-06 46.0 3.7 74 525-604 42-115 (135)
67 3u59_A Tropomyosin beta chain; 89.8 8.4 0.00029 33.4 13.7 90 527-616 7-97 (101)
68 3a7p_A Autophagy protein 16; c 89.6 4.7 0.00016 37.6 12.5 75 537-611 69-144 (152)
69 1deq_A Fibrinogen (alpha chain 89.5 4.7 0.00016 42.8 13.8 15 526-540 117-131 (390)
70 3bas_A Myosin heavy chain, str 89.4 5 0.00017 34.1 11.7 75 521-602 13-87 (89)
71 3na7_A HP0958; flagellar bioge 89.0 20 0.00069 36.0 24.2 127 523-658 98-235 (256)
72 3s4r_A Vimentin; alpha-helix, 88.9 5.3 0.00018 34.2 11.6 59 543-603 30-88 (93)
73 2eqb_B RAB guanine nucleotide 88.8 1.1 3.7E-05 38.8 7.0 54 551-604 6-59 (97)
74 2ocy_A RAB guanine nucleotide 88.7 2.5 8.5E-05 39.7 10.0 77 523-603 14-90 (154)
75 3swk_A Vimentin; cytoskeleton, 88.3 5.1 0.00017 33.8 10.9 57 548-604 26-82 (86)
76 3oja_A Leucine-rich immune mol 88.3 24 0.00083 38.4 19.6 10 309-318 238-247 (487)
77 1ic2_A Tropomyosin alpha chain 87.8 6.6 0.00022 32.6 11.2 56 550-605 20-75 (81)
78 3t15_A Ribulose bisphosphate c 87.7 0.21 7.1E-06 51.5 2.3 48 113-160 2-53 (293)
79 1l8d_A DNA double-strand break 86.5 7.4 0.00025 33.9 11.5 39 525-563 6-44 (112)
80 2r62_A Cell division protease 86.0 0.4 1.4E-05 48.0 3.2 50 110-160 7-61 (268)
81 1jbk_A CLPB protein; beta barr 85.7 0.42 1.4E-05 44.0 3.1 28 133-160 33-60 (195)
82 1f5n_A Interferon-induced guan 85.7 53 0.0018 37.2 22.2 22 139-160 34-55 (592)
83 2i1j_A Moesin; FERM, coiled-co 85.4 0.96 3.3E-05 51.3 6.4 67 520-586 382-448 (575)
84 3jsv_C NF-kappa-B essential mo 85.2 7 0.00024 33.5 10.0 74 532-605 5-81 (94)
85 2e7s_A RAB guanine nucleotide 84.8 1.5 5.1E-05 40.2 6.1 55 550-604 25-79 (135)
86 3cve_A Homer protein homolog 1 84.7 8.7 0.0003 31.4 9.9 63 534-596 5-67 (72)
87 3bos_A Putative DNA replicatio 84.7 0.49 1.7E-05 45.7 3.1 45 110-160 24-69 (242)
88 2bjv_A PSP operon transcriptio 84.7 0.31 1E-05 48.9 1.6 45 110-160 2-46 (265)
89 1m1j_A Fibrinogen alpha subuni 84.5 26 0.00089 38.1 16.3 55 542-596 103-157 (491)
90 2no2_A HIP-I, huntingtin-inter 84.1 17 0.00059 31.9 12.5 53 552-604 49-101 (107)
91 3te6_A Regulatory protein SIR3 84.0 0.35 1.2E-05 50.9 1.8 25 136-160 38-62 (318)
92 2p65_A Hypothetical protein PF 83.6 0.47 1.6E-05 43.8 2.3 28 133-160 33-60 (187)
93 3h4m_A Proteasome-activating n 83.3 0.44 1.5E-05 48.1 2.1 51 110-160 13-68 (285)
94 3cvf_A Homer-3, homer protein 83.2 6.5 0.00022 32.8 8.7 60 537-596 14-73 (79)
95 1l8q_A Chromosomal replication 83.1 0.59 2E-05 48.3 3.1 48 110-160 7-54 (324)
96 3iox_A AGI/II, PA; alpha helix 82.8 17 0.00058 40.0 14.3 52 569-620 71-122 (497)
97 2jee_A YIIU; FTSZ, septum, coi 82.8 16 0.00053 30.6 10.9 9 552-560 29-37 (81)
98 3cf0_A Transitional endoplasmi 82.7 0.5 1.7E-05 48.7 2.3 51 110-160 11-66 (301)
99 1g8p_A Magnesium-chelatase 38 82.3 0.63 2.2E-05 48.2 3.0 44 109-160 19-62 (350)
100 1ixz_A ATP-dependent metallopr 82.2 0.61 2.1E-05 46.3 2.7 50 110-160 12-66 (254)
101 3qh9_A Liprin-beta-2; coiled-c 81.4 8.8 0.0003 31.9 8.8 12 590-601 66-77 (81)
102 3qh9_A Liprin-beta-2; coiled-c 81.1 16 0.00055 30.4 10.2 54 526-579 23-76 (81)
103 3b9p_A CG5977-PA, isoform A; A 81.0 0.49 1.7E-05 48.1 1.5 51 110-160 17-71 (297)
104 1ic2_A Tropomyosin alpha chain 81.0 5.2 0.00018 33.2 7.6 56 529-584 20-75 (81)
105 3tnu_A Keratin, type I cytoske 80.6 14 0.00047 33.5 11.0 73 525-597 41-124 (131)
106 3htk_A Structural maintenance 80.6 7.8 0.00027 30.0 8.1 51 551-601 6-56 (60)
107 2kjq_A DNAA-related protein; s 80.4 0.7 2.4E-05 42.7 2.2 17 144-160 37-53 (149)
108 3vfd_A Spastin; ATPase, microt 80.1 0.36 1.2E-05 51.6 0.1 52 109-160 110-165 (389)
109 4etp_B Spindle POLE BODY-assoc 80.1 8.6 0.00029 40.1 10.3 121 63-211 58-183 (333)
110 3hd7_B Syntaxin-1A; membrane p 80.1 14 0.00047 32.5 10.4 62 550-611 21-82 (109)
111 3tnu_B Keratin, type II cytosk 79.6 23 0.0008 31.8 12.1 47 551-597 76-122 (129)
112 4h22_A Leucine-rich repeat fli 79.3 11 0.00037 32.9 9.0 72 533-604 6-84 (103)
113 3mq7_A Bone marrow stromal ant 79.3 34 0.0012 30.4 13.1 31 551-581 72-102 (121)
114 1d2n_A N-ethylmaleimide-sensit 79.1 1.4 4.8E-05 44.2 4.2 21 140-160 61-81 (272)
115 1iy2_A ATP-dependent metallopr 78.8 0.5 1.7E-05 47.8 0.7 50 110-160 36-90 (278)
116 4gkw_A Spindle assembly abnorm 78.7 38 0.0013 30.6 13.2 11 549-559 59-69 (167)
117 2v1u_A Cell division control p 78.6 0.52 1.8E-05 49.2 0.7 44 116-160 17-61 (387)
118 4b4t_K 26S protease regulatory 78.2 2.7 9.3E-05 45.9 6.4 125 67-194 117-270 (428)
119 1deq_A Fibrinogen (alpha chain 78.1 43 0.0015 35.6 15.0 25 553-577 151-175 (390)
120 1fnn_A CDC6P, cell division co 77.4 1.6 5.5E-05 45.5 4.2 39 121-160 20-61 (389)
121 3mq7_A Bone marrow stromal ant 77.4 35 0.0012 30.3 11.8 25 587-611 73-97 (121)
122 3a7p_A Autophagy protein 16; c 77.0 21 0.00072 33.2 10.9 62 540-601 65-126 (152)
123 3mq9_A Bone marrow stromal ant 76.7 23 0.00078 38.4 13.4 63 547-609 401-467 (471)
124 1qde_A EIF4A, translation init 76.6 1.1 3.6E-05 43.4 2.3 23 135-159 45-67 (224)
125 3d8b_A Fidgetin-like protein 1 76.4 0.65 2.2E-05 49.1 0.7 51 110-160 80-134 (357)
126 2z4s_A Chromosomal replication 76.1 1.3 4.4E-05 48.4 3.0 49 108-160 99-147 (440)
127 3iox_A AGI/II, PA; alpha helix 76.1 53 0.0018 36.1 15.5 21 575-595 84-104 (497)
128 1d7m_A Cortexillin I; coiled-c 76.0 35 0.0012 28.8 12.4 49 554-602 36-84 (101)
129 1f5n_A Interferon-induced guan 75.9 1.1E+02 0.0038 34.6 19.4 13 590-602 565-577 (592)
130 1vec_A ATP-dependent RNA helic 75.9 1.3 4.3E-05 42.2 2.6 24 135-160 34-57 (206)
131 2gxq_A Heat resistant RNA depe 75.6 1.2 4.1E-05 42.2 2.3 24 135-160 32-55 (207)
132 2qz4_A Paraplegin; AAA+, SPG7, 75.5 0.53 1.8E-05 46.6 -0.3 19 142-160 38-56 (262)
133 1l8d_A DNA double-strand break 75.1 32 0.0011 29.7 11.4 33 569-601 69-101 (112)
134 1lv7_A FTSH; alpha/beta domain 74.9 0.65 2.2E-05 46.2 0.2 50 110-160 8-62 (257)
135 2chg_A Replication factor C sm 74.6 1.4 4.8E-05 41.4 2.6 21 140-160 35-55 (226)
136 4b4t_M 26S protease regulatory 74.5 1.2 4.1E-05 48.8 2.2 51 110-160 177-232 (434)
137 2b9c_A Striated-muscle alpha t 74.4 30 0.001 32.0 11.5 14 588-601 97-110 (147)
138 1m1j_B Fibrinogen beta chain; 74.4 74 0.0025 34.9 16.3 7 637-643 214-220 (464)
139 3iv1_A Tumor susceptibility ge 74.2 32 0.0011 28.5 10.1 31 575-605 43-73 (78)
140 2qby_B CDC6 homolog 3, cell di 74.2 1.8 6.1E-05 45.2 3.5 39 121-160 23-62 (384)
141 1xwi_A SKD1 protein; VPS4B, AA 74.0 0.95 3.2E-05 47.2 1.2 50 111-160 9-62 (322)
142 1m1j_B Fibrinogen beta chain; 73.9 26 0.00089 38.5 12.6 9 592-600 182-190 (464)
143 3uk6_A RUVB-like 2; hexameric 73.8 1.6 5.6E-05 45.5 3.0 46 110-160 40-87 (368)
144 3s4r_A Vimentin; alpha-helix, 73.4 24 0.00081 30.1 9.7 40 544-583 50-89 (93)
145 1p9r_A General secretion pathw 73.4 1.5 5.2E-05 47.7 2.7 28 133-160 157-184 (418)
146 3tnu_B Keratin, type II cytosk 73.1 13 0.00045 33.5 8.5 62 522-586 36-97 (129)
147 3dkp_A Probable ATP-dependent 72.6 1.5 5.3E-05 42.9 2.3 23 135-159 60-82 (245)
148 3swk_A Vimentin; cytoskeleton, 72.2 21 0.00071 30.1 8.9 57 527-583 26-82 (86)
149 3bor_A Human initiation factor 71.9 0.99 3.4E-05 44.4 0.7 24 135-160 61-84 (237)
150 3efg_A Protein SLYX homolog; x 71.4 8.9 0.0003 31.8 6.3 53 547-599 11-63 (78)
151 2i1j_A Moesin; FERM, coiled-co 70.9 6.5 0.00022 44.5 7.2 66 543-608 384-449 (575)
152 3syl_A Protein CBBX; photosynt 70.7 1.4 4.9E-05 44.7 1.7 20 141-160 65-84 (309)
153 1sxj_C Activator 1 40 kDa subu 70.7 2 7E-05 44.6 2.9 41 112-160 23-63 (340)
154 3jvv_A Twitching mobility prot 70.5 1.7 5.8E-05 46.3 2.2 26 135-160 115-140 (356)
155 2pl3_A Probable ATP-dependent 70.3 1.9 6.4E-05 42.1 2.3 24 135-160 56-79 (236)
156 2qby_A CDC6 homolog 1, cell di 69.7 1.3 4.5E-05 45.9 1.1 20 141-160 43-62 (386)
157 1t6n_A Probable ATP-dependent 69.6 2 6.7E-05 41.4 2.3 24 135-160 45-68 (220)
158 3ghg_B Fibrinogen beta chain; 69.4 18 0.0006 39.6 9.8 86 523-608 89-179 (461)
159 1m1j_C Fibrinogen gamma chain; 69.4 48 0.0017 35.8 13.3 8 636-643 150-157 (409)
160 2zqm_A Prefoldin beta subunit 68.4 58 0.002 28.1 12.0 78 527-604 11-103 (117)
161 3tnu_A Keratin, type I cytoske 68.3 14 0.00049 33.4 7.7 11 592-602 84-94 (131)
162 3hd7_B Syntaxin-1A; membrane p 68.2 43 0.0015 29.2 10.5 74 550-623 14-87 (109)
163 1wt6_A Myotonin-protein kinase 68.1 47 0.0016 27.6 9.8 59 531-603 12-70 (81)
164 3b6e_A Interferon-induced heli 67.9 1.1 3.9E-05 42.5 0.2 33 118-160 33-65 (216)
165 3iuy_A Probable ATP-dependent 67.6 2.3 7.8E-05 41.2 2.3 24 135-160 51-74 (228)
166 3eie_A Vacuolar protein sortin 67.4 1.6 5.5E-05 45.2 1.2 51 110-160 14-68 (322)
167 3ly5_A ATP-dependent RNA helic 67.3 1.6 5.6E-05 43.7 1.2 23 135-159 85-107 (262)
168 2c9o_A RUVB-like 1; hexameric 67.1 2.9 9.8E-05 45.7 3.2 46 110-160 33-80 (456)
169 4b4t_L 26S protease subunit RP 67.0 1.7 5.7E-05 47.7 1.3 51 110-160 177-232 (437)
170 1wrb_A DJVLGB; RNA helicase, D 66.8 2.4 8.1E-05 41.8 2.3 24 135-160 54-77 (253)
171 3fmo_B ATP-dependent RNA helic 66.5 2.2 7.6E-05 43.8 2.1 26 134-159 122-147 (300)
172 4fla_A Regulation of nuclear P 66.5 83 0.0028 29.2 14.1 72 522-596 75-146 (152)
173 2qp9_X Vacuolar protein sortin 65.8 1.8 6.2E-05 45.7 1.2 51 110-160 47-101 (355)
174 2x8a_A Nuclear valosin-contain 65.2 1.6 5.4E-05 44.5 0.6 51 110-160 6-61 (274)
175 2oxc_A Probable ATP-dependent 64.9 2.8 9.4E-05 40.8 2.3 22 136-159 56-77 (230)
176 3bas_A Myosin heavy chain, str 64.8 62 0.0021 27.2 11.3 28 576-603 54-81 (89)
177 1x79_B RAB GTPase binding effe 64.7 71 0.0024 28.2 11.0 21 531-551 15-35 (112)
178 1go4_E MAD1 (mitotic arrest de 64.7 27 0.00092 30.3 8.1 18 585-602 75-92 (100)
179 3fe2_A Probable ATP-dependent 64.6 2.4 8.3E-05 41.6 1.8 23 136-160 61-83 (242)
180 3eiq_A Eukaryotic initiation f 64.2 2.9 0.0001 43.9 2.5 23 135-159 71-93 (414)
181 3ber_A Probable ATP-dependent 64.2 2.9 0.0001 41.5 2.3 24 135-160 74-97 (249)
182 3llm_A ATP-dependent RNA helic 64.1 2.5 8.5E-05 41.5 1.8 24 135-160 70-93 (235)
183 2v66_B Nuclear distribution pr 64.0 77 0.0026 27.9 15.0 66 529-594 35-100 (111)
184 3co5_A Putative two-component 63.9 3.9 0.00013 36.9 2.9 18 143-160 27-44 (143)
185 2zqm_A Prefoldin beta subunit 63.7 72 0.0025 27.5 11.7 20 585-604 77-96 (117)
186 2eyu_A Twitching motility prot 63.7 2.7 9.2E-05 42.5 2.0 20 141-160 23-42 (261)
187 1ik9_A DNA repair protein XRCC 63.4 61 0.0021 31.8 11.6 33 545-577 148-180 (213)
188 3hu3_A Transitional endoplasmi 63.3 2.9 9.8E-05 46.4 2.3 50 111-160 201-255 (489)
189 1u0j_A DNA replication protein 63.0 3.7 0.00013 42.0 2.9 29 132-160 90-121 (267)
190 3pfi_A Holliday junction ATP-d 62.7 3.9 0.00013 42.1 3.1 44 112-160 27-72 (338)
191 2zan_A Vacuolar protein sortin 62.5 1.9 6.5E-05 47.1 0.6 51 110-160 130-184 (444)
192 1njg_A DNA polymerase III subu 62.4 4.4 0.00015 38.3 3.2 18 143-160 45-62 (250)
193 1w5s_A Origin recognition comp 62.3 4.4 0.00015 42.5 3.5 25 136-160 40-69 (412)
194 4h22_A Leucine-rich repeat fli 61.8 36 0.0012 29.6 8.4 44 552-595 39-82 (103)
195 1fxk_A Prefoldin; archaeal pro 61.6 74 0.0025 27.0 11.7 75 529-603 8-97 (107)
196 2jee_A YIIU; FTSZ, septum, coi 61.5 70 0.0024 26.6 10.6 24 552-575 22-45 (81)
197 1x8y_A Lamin A/C; structural p 61.4 54 0.0018 27.4 9.4 54 548-601 26-79 (86)
198 3htk_A Structural maintenance 61.4 38 0.0013 26.0 7.9 46 549-594 11-56 (60)
199 3fmp_B ATP-dependent RNA helic 61.1 3.4 0.00012 44.8 2.4 26 134-159 122-147 (479)
200 1q0u_A Bstdead; DEAD protein, 61.0 2.1 7.1E-05 41.3 0.6 23 135-159 35-57 (219)
201 4b4t_J 26S protease regulatory 60.5 3.1 0.00011 45.1 1.9 51 110-160 144-199 (405)
202 1tue_A Replication protein E1; 60.3 2.3 8E-05 42.0 0.8 26 135-160 48-75 (212)
203 1hqc_A RUVB; extended AAA-ATPa 60.2 4.8 0.00016 41.0 3.2 44 112-160 10-55 (324)
204 2r44_A Uncharacterized protein 59.7 2.8 9.5E-05 43.2 1.3 37 118-160 27-63 (331)
205 3fht_A ATP-dependent RNA helic 59.4 3.6 0.00012 43.0 2.1 25 135-159 56-80 (412)
206 1iqp_A RFCS; clamp loader, ext 59.4 5.1 0.00017 40.5 3.2 40 113-160 24-63 (327)
207 2j0s_A ATP-dependent RNA helic 59.3 3.7 0.00013 43.2 2.2 24 135-160 68-91 (410)
208 4etp_A Kinesin-like protein KA 59.2 23 0.00079 38.2 8.5 51 548-598 8-58 (403)
209 1gvn_B Zeta; postsegregational 58.8 6.7 0.00023 40.0 4.0 31 130-160 15-50 (287)
210 2a01_A Apolipoprotein A-I; fou 58.6 1.1E+02 0.0039 30.2 13.0 15 394-408 28-42 (243)
211 3nmd_A CGMP dependent protein 58.6 25 0.00086 28.7 6.4 8 593-600 55-62 (72)
212 2fz4_A DNA repair protein RAD2 58.5 4 0.00014 40.4 2.1 37 114-160 89-125 (237)
213 3pey_A ATP-dependent RNA helic 58.3 3.8 0.00013 42.4 2.1 26 135-160 36-61 (395)
214 3cve_A Homer protein homolog 1 58.2 51 0.0018 26.8 8.2 39 525-563 17-55 (72)
215 2b9c_A Striated-muscle alpha t 58.1 1.2E+02 0.004 28.0 14.1 71 481-568 49-119 (147)
216 1ofh_A ATP-dependent HSL prote 58.0 4.1 0.00014 41.0 2.2 18 143-160 50-67 (310)
217 3mov_A Lamin-B1; LMNB1, B-type 58.0 71 0.0024 27.3 9.7 55 547-601 34-88 (95)
218 3n70_A Transport activator; si 57.9 2.9 0.0001 37.8 1.0 20 141-160 22-41 (145)
219 4fcw_A Chaperone protein CLPB; 57.6 3.9 0.00013 41.4 1.9 38 122-160 21-64 (311)
220 1gk4_A Vimentin; intermediate 57.5 81 0.0028 26.1 11.8 56 546-601 22-77 (84)
221 1ci6_A Transcription factor AT 57.3 33 0.0011 27.0 6.9 39 543-581 23-61 (63)
222 1kd8_B GABH BLL, GCN4 acid bas 57.3 30 0.001 24.2 5.6 27 554-580 5-31 (36)
223 1fxk_C Protein (prefoldin); ar 57.1 1.1E+02 0.0036 27.3 11.9 33 528-560 7-39 (133)
224 4b4t_H 26S protease regulatory 56.9 2.3 8E-05 46.9 0.1 51 110-160 205-260 (467)
225 2oap_1 GSPE-2, type II secreti 56.6 4.9 0.00017 44.8 2.7 19 140-160 259-277 (511)
226 2z0m_A 337AA long hypothetical 56.4 4.6 0.00016 40.9 2.2 23 136-160 26-48 (337)
227 4b4t_I 26S protease regulatory 56.3 4.9 0.00017 44.0 2.5 50 111-160 179-233 (437)
228 3h1t_A Type I site-specific re 56.1 5.4 0.00019 44.7 3.0 25 135-160 191-215 (590)
229 2v4h_A NF-kappa-B essential mo 56.0 1.1E+02 0.0036 27.0 12.2 19 585-603 90-108 (110)
230 1sxj_D Activator 1 41 kDa subu 55.8 4.2 0.00014 41.8 1.8 41 112-160 35-75 (353)
231 1s2m_A Putative ATP-dependent 55.5 4.4 0.00015 42.4 2.0 24 135-160 52-75 (400)
232 3pxg_A Negative regulator of g 55.4 7.5 0.00026 42.6 3.9 41 112-160 178-218 (468)
233 2ewv_A Twitching motility prot 55.0 3.5 0.00012 43.9 1.1 25 136-160 129-153 (372)
234 3u61_B DNA polymerase accessor 54.6 7.4 0.00025 39.8 3.5 19 142-160 47-65 (324)
235 3pvs_A Replication-associated 54.4 4.5 0.00015 44.2 1.9 39 121-160 29-67 (447)
236 1kd8_B GABH BLL, GCN4 acid bas 54.1 18 0.00061 25.3 4.1 34 530-563 2-35 (36)
237 2i4i_A ATP-dependent RNA helic 54.1 5.2 0.00018 42.0 2.3 23 136-160 47-69 (417)
238 3s84_A Apolipoprotein A-IV; fo 54.0 1.9E+02 0.0065 29.3 23.6 34 571-604 176-210 (273)
239 3cvf_A Homer-3, homer protein 53.9 94 0.0032 25.7 9.4 37 525-561 23-59 (79)
240 2ce7_A Cell division protein F 53.8 3.7 0.00013 45.4 1.1 47 109-160 11-66 (476)
241 2xnx_M M protein, M1-BC1; cell 53.6 34 0.0012 31.5 7.2 59 530-588 67-132 (146)
242 1jr3_A DNA polymerase III subu 53.3 8.5 0.00029 39.8 3.7 37 121-160 19-55 (373)
243 1cxz_B Protein (PKN); protein- 52.8 32 0.0011 29.0 6.4 58 525-582 21-81 (86)
244 1in4_A RUVB, holliday junction 52.5 6.8 0.00023 40.7 2.8 17 144-160 52-68 (334)
245 1m1j_C Fibrinogen gamma chain; 52.4 1.3E+02 0.0043 32.5 12.7 23 559-581 93-115 (409)
246 3u06_A Protein claret segregat 52.4 31 0.0011 37.3 8.1 52 547-598 7-58 (412)
247 2k48_A Nucleoprotein; viral pr 51.8 72 0.0025 27.7 8.5 22 524-545 37-58 (107)
248 2ke4_A CDC42-interacting prote 51.6 61 0.0021 27.9 8.2 35 522-556 15-49 (98)
249 3ghg_B Fibrinogen beta chain; 51.5 1.7E+02 0.0057 32.0 13.4 31 570-600 162-192 (461)
250 3trt_A Vimentin; cytoskeleton, 51.3 94 0.0032 25.0 9.7 43 555-597 33-75 (77)
251 3haj_A Human pacsin2 F-BAR; pa 51.3 2.7E+02 0.0092 30.3 19.4 15 419-433 23-37 (486)
252 2chq_A Replication factor C sm 50.9 4.8 0.00016 40.6 1.3 41 112-160 15-55 (319)
253 3c3f_A Alpha/beta peptide with 50.8 19 0.00065 24.9 3.7 28 553-580 4-31 (34)
254 2wq1_A General control protein 50.7 26 0.00087 24.1 4.3 28 553-580 3-30 (33)
255 1rif_A DAR protein, DNA helica 50.3 4.6 0.00016 40.6 1.0 21 138-160 125-145 (282)
256 1xti_A Probable ATP-dependent 50.2 6.6 0.00023 40.7 2.3 24 135-160 39-62 (391)
257 1n0w_A DNA repair protein RAD5 50.1 6.7 0.00023 37.9 2.1 28 133-160 11-41 (243)
258 3i5x_A ATP-dependent RNA helic 50.0 7.5 0.00026 43.0 2.8 26 134-159 102-127 (563)
259 3oiy_A Reverse gyrase helicase 49.6 6.5 0.00022 41.6 2.1 23 135-159 30-52 (414)
260 3iv1_A Tumor susceptibility ge 49.3 1.1E+02 0.0038 25.2 10.7 53 547-599 22-74 (78)
261 3fho_A ATP-dependent RNA helic 49.2 6.2 0.00021 43.5 2.0 25 135-159 150-174 (508)
262 1c4o_A DNA nucleotide excision 48.9 11 0.00038 43.3 4.1 45 111-161 2-46 (664)
263 2dhr_A FTSH; AAA+ protein, hex 48.8 3.4 0.00012 46.0 -0.3 50 110-160 27-81 (499)
264 3trt_A Vimentin; cytoskeleton, 48.8 1E+02 0.0035 24.7 10.0 44 547-590 32-75 (77)
265 1gd2_E Transcription factor PA 48.5 23 0.0008 28.7 4.7 34 549-582 28-61 (70)
266 1lq7_A Alpha3W; three helix bu 48.1 26 0.0009 26.7 4.6 14 547-560 6-19 (67)
267 4b3f_X DNA-binding protein smu 47.8 7 0.00024 44.6 2.2 25 135-160 198-222 (646)
268 2r2v_A GCN4 leucine zipper; co 47.8 30 0.001 24.0 4.3 29 552-580 3-31 (34)
269 1w36_D RECD, exodeoxyribonucle 47.7 7 0.00024 44.4 2.1 18 143-160 164-181 (608)
270 2lw1_A ABC transporter ATP-bin 47.6 1.2E+02 0.0042 25.2 9.9 56 542-597 21-82 (89)
271 1t2k_D Cyclic-AMP-dependent tr 47.6 52 0.0018 25.5 6.6 14 554-567 26-39 (61)
272 2db3_A ATP-dependent RNA helic 47.0 7.8 0.00027 41.7 2.3 24 135-160 87-110 (434)
273 1deb_A APC protein, adenomatou 46.9 81 0.0028 23.8 7.0 44 559-602 5-48 (54)
274 1gqe_A Release factor 2, RF2; 46.7 2.9E+02 0.0098 29.3 14.7 27 639-665 176-202 (365)
275 3m91_A Proteasome-associated A 46.7 63 0.0021 24.5 6.6 11 554-564 13-23 (51)
276 1e9r_A Conjugal transfer prote 46.3 5.4 0.00018 42.9 0.8 19 142-160 52-70 (437)
277 3b85_A Phosphate starvation-in 46.2 9 0.00031 37.3 2.4 25 134-160 15-39 (208)
278 2v1x_A ATP-dependent DNA helic 46.2 9.7 0.00033 43.1 3.0 23 135-159 53-75 (591)
279 3c8u_A Fructokinase; YP_612366 46.1 11 0.00039 35.9 3.1 29 132-160 9-39 (208)
280 1hv8_A Putative ATP-dependent 46.1 7.4 0.00025 39.7 1.9 24 136-160 38-61 (367)
281 4a2p_A RIG-I, retinoic acid in 45.7 8.4 0.00029 42.0 2.3 24 135-160 16-39 (556)
282 2p5t_B PEZT; postsegregational 45.6 8.5 0.00029 38.2 2.1 17 144-160 33-49 (253)
283 3k29_A Putative uncharacterize 45.5 2E+02 0.0068 27.1 20.3 24 471-494 42-65 (169)
284 2xv5_A Lamin-A/C; structural p 45.4 95 0.0033 25.3 8.0 50 551-600 6-55 (74)
285 1fuu_A Yeast initiation factor 45.4 4.8 0.00017 41.7 0.3 24 135-160 52-75 (394)
286 1wle_A Seryl-tRNA synthetase; 45.4 1.5E+02 0.005 32.8 12.3 72 524-602 72-147 (501)
287 1nlw_A MAD protein, MAX dimeri 45.3 46 0.0016 27.5 6.2 34 570-603 46-79 (80)
288 1qvr_A CLPB protein; coiled co 45.2 6.9 0.00024 46.3 1.6 41 112-160 168-208 (854)
289 2w0m_A SSO2452; RECA, SSPF, un 44.9 8.2 0.00028 36.7 1.8 28 133-160 10-40 (235)
290 1kd8_A GABH AIV, GCN4 acid bas 44.7 22 0.00074 24.9 3.3 27 554-580 5-31 (36)
291 1wt6_A Myotonin-protein kinase 44.5 1.3E+02 0.0043 25.0 8.5 30 546-582 41-70 (81)
292 2cvh_A DNA repair and recombin 44.5 9.4 0.00032 36.2 2.2 28 133-160 7-37 (220)
293 1sxj_B Activator 1 37 kDa subu 44.4 8.8 0.0003 38.6 2.1 21 140-160 39-59 (323)
294 3iyk_A VP5; icosahedral virus; 44.3 3.6E+02 0.012 29.7 15.5 43 525-567 163-206 (526)
295 1rz3_A Hypothetical protein rb 44.2 13 0.00044 35.3 3.1 19 142-160 21-39 (201)
296 3efg_A Protein SLYX homolog; x 44.2 51 0.0018 27.1 6.3 15 562-576 19-33 (78)
297 3upu_A ATP-dependent DNA helic 44.0 12 0.0004 40.7 3.1 36 120-160 27-62 (459)
298 4gp7_A Metallophosphoesterase; 44.0 6.5 0.00022 36.5 0.9 17 144-160 10-26 (171)
299 1ojl_A Transcriptional regulat 43.9 7.3 0.00025 40.1 1.4 20 141-160 23-42 (304)
300 4emc_A Monopolin complex subun 43.7 98 0.0034 29.7 9.0 40 550-589 20-59 (190)
301 3c3g_A Alpha/beta peptide with 43.7 38 0.0013 23.3 4.3 26 554-579 4-29 (33)
302 3tbk_A RIG-I helicase domain; 43.7 9.5 0.00032 41.5 2.3 24 135-160 13-36 (555)
303 2fwr_A DNA repair protein RAD2 43.2 9.5 0.00033 41.1 2.2 33 118-160 93-125 (472)
304 2k48_A Nucleoprotein; viral pr 43.0 1.7E+02 0.0057 25.5 9.7 16 587-602 84-99 (107)
305 1fxk_A Prefoldin; archaeal pro 42.6 1.5E+02 0.0052 24.9 11.7 10 591-600 78-87 (107)
306 1um8_A ATP-dependent CLP prote 42.5 9 0.00031 40.2 1.8 18 143-160 72-89 (376)
307 4a74_A DNA repair and recombin 42.3 11 0.00039 35.8 2.4 28 133-160 12-42 (231)
308 1kd8_A GABH AIV, GCN4 acid bas 42.2 50 0.0017 23.1 4.9 32 531-562 3-34 (36)
309 3a7o_A Autophagy protein 16; c 42.2 79 0.0027 25.5 6.7 41 558-598 19-59 (75)
310 4gkw_A Spindle assembly abnorm 42.1 2E+02 0.0067 26.0 21.6 49 551-599 99-147 (167)
311 3cf2_A TER ATPase, transitiona 42.1 15 0.0005 43.4 3.7 79 110-188 200-296 (806)
312 3sqw_A ATP-dependent RNA helic 42.1 12 0.0004 41.9 2.8 25 135-159 52-76 (579)
313 2gk6_A Regulator of nonsense t 41.9 9.8 0.00034 43.3 2.2 17 144-160 196-212 (624)
314 2oxj_A Hybrid alpha/beta pepti 41.6 32 0.0011 23.8 3.7 24 554-577 5-28 (34)
315 3uux_B Mitochondrial division 41.4 1.7E+02 0.0058 29.1 10.6 73 523-602 150-222 (242)
316 1m1j_A Fibrinogen alpha subuni 41.3 2.7E+02 0.0091 30.4 12.8 65 431-496 91-158 (491)
317 1sxj_E Activator 1 40 kDa subu 40.9 8.2 0.00028 39.8 1.2 15 146-160 39-53 (354)
318 3b9q_A Chloroplast SRP recepto 40.8 17 0.00059 37.4 3.6 17 144-160 101-117 (302)
319 3fpp_A Macrolide-specific effl 40.8 1.3E+02 0.0045 30.6 10.5 38 570-607 113-150 (341)
320 1gmj_A ATPase inhibitor; coile 40.7 1.5E+02 0.0051 24.8 8.5 15 588-602 61-75 (84)
321 2zdi_C Prefoldin subunit alpha 40.6 1.3E+02 0.0046 27.3 9.4 42 569-610 96-137 (151)
322 3s84_A Apolipoprotein A-IV; fo 40.5 3E+02 0.01 27.7 23.7 41 543-583 169-210 (273)
323 4ag6_A VIRB4 ATPase, type IV s 40.4 6.7 0.00023 41.6 0.4 18 143-160 35-52 (392)
324 2wt7_A Proto-oncogene protein 40.2 71 0.0024 25.0 6.3 8 556-563 29-36 (63)
325 2ke4_A CDC42-interacting prote 40.2 1.8E+02 0.0061 25.0 9.9 29 577-605 61-89 (98)
326 4fye_A SIDF, inhibitor of grow 40.1 2.7E+02 0.0093 29.2 12.3 76 550-625 523-607 (761)
327 4gl2_A Interferon-induced heli 40.1 11 0.00037 42.9 2.2 24 135-160 16-39 (699)
328 3lw7_A Adenylate kinase relate 39.8 8.9 0.00031 34.5 1.1 16 145-160 3-18 (179)
329 3hws_A ATP-dependent CLP prote 39.5 7.2 0.00025 40.8 0.5 18 143-160 51-68 (363)
330 2ic6_A Nucleocapsid protein; h 39.1 1.6E+02 0.0055 24.3 8.3 54 551-604 6-71 (78)
331 3m9b_A Proteasome-associated A 38.9 23 0.00078 35.7 4.0 7 594-600 84-90 (251)
332 1gm5_A RECG; helicase, replica 38.8 11 0.00037 44.3 1.9 24 137-160 383-406 (780)
333 2l5g_B Putative uncharacterize 38.7 51 0.0017 24.0 4.6 32 576-607 7-38 (42)
334 2b5u_A Colicin E3; high resolu 38.6 1.3E+02 0.0045 33.0 10.0 16 533-548 295-310 (551)
335 1go4_E MAD1 (mitotic arrest de 38.5 25 0.00087 30.5 3.7 34 570-603 11-44 (100)
336 3hd7_A Vesicle-associated memb 38.3 1.8E+02 0.006 24.4 9.6 35 551-585 6-40 (91)
337 3tr0_A Guanylate kinase, GMP k 38.3 9 0.00031 36.0 0.9 16 145-160 9-24 (205)
338 2bni_A General control protein 38.2 25 0.00085 24.4 2.8 27 553-579 4-30 (34)
339 1lwu_C Fibrinogen gamma chain; 38.2 56 0.0019 34.2 7.0 47 554-600 9-55 (323)
340 2r8r_A Sensor protein; KDPD, P 38.1 8.3 0.00028 38.5 0.6 17 144-160 7-23 (228)
341 2qag_C Septin-7; cell cycle, c 38.1 9 0.00031 41.6 1.0 23 138-160 26-48 (418)
342 1wp9_A ATP-dependent RNA helic 38.1 12 0.0004 39.4 1.9 23 135-160 18-40 (494)
343 1hjb_A Ccaat/enhancer binding 37.9 79 0.0027 26.6 6.6 29 549-577 42-70 (87)
344 1lkx_A Myosin IE heavy chain; 37.8 17 0.00058 42.1 3.3 21 140-160 91-111 (697)
345 3he4_A Synzip6; heterodimeric 37.8 42 0.0014 24.7 4.2 37 571-607 17-53 (56)
346 3tau_A Guanylate kinase, GMP k 37.7 10 0.00035 36.3 1.2 17 144-160 9-25 (208)
347 3ni0_A Bone marrow stromal ant 37.7 1.9E+02 0.0066 24.6 10.3 48 558-605 40-87 (99)
348 2dr3_A UPF0273 protein PH0284; 37.5 12 0.00041 36.0 1.7 26 135-160 12-40 (247)
349 3u0c_A Invasin IPAB, 62 kDa an 37.3 2.7E+02 0.0092 26.2 11.2 56 549-604 88-143 (201)
350 4dk0_A Putative MACA; alpha-ha 37.1 1.1E+02 0.0038 31.5 9.3 35 571-605 115-149 (369)
351 3e70_C DPA, signal recognition 37.0 21 0.00074 37.2 3.7 18 143-160 129-146 (328)
352 1kgd_A CASK, peripheral plasma 36.8 9.7 0.00033 35.6 0.9 16 145-160 7-22 (180)
353 3qne_A Seryl-tRNA synthetase, 36.7 1.2E+02 0.004 33.5 9.6 55 544-602 48-102 (485)
354 2hy6_A General control protein 36.7 39 0.0013 23.3 3.6 28 553-580 4-31 (34)
355 3m0d_C TNF receptor-associated 36.6 1.5E+02 0.0053 23.2 8.8 52 552-603 8-59 (65)
356 2jlq_A Serine protease subunit 36.4 10 0.00035 41.1 1.2 24 135-159 12-35 (451)
357 3pxi_A Negative regulator of g 36.4 19 0.00064 41.8 3.4 37 123-160 496-538 (758)
358 2qnr_A Septin-2, protein NEDD5 36.1 9.6 0.00033 39.2 0.8 23 138-160 13-35 (301)
359 3hhm_B NISH2 P85alpha; PI3KCA, 36.1 3.9E+02 0.013 28.2 13.4 131 459-609 127-257 (373)
360 3ghg_C Fibrinogen gamma chain; 36.0 1.3E+02 0.0045 32.4 9.7 36 525-560 34-69 (411)
361 2oto_A M protein; helical coil 36.0 2.6E+02 0.0087 25.6 12.7 85 522-606 29-114 (155)
362 1zp6_A Hypothetical protein AT 36.0 11 0.00037 35.1 1.0 17 144-160 10-26 (191)
363 3lfu_A DNA helicase II; SF1 he 36.0 10 0.00036 42.6 1.1 20 141-160 20-39 (647)
364 1sxj_A Activator 1 95 kDa subu 35.9 14 0.00047 40.9 2.1 18 143-160 77-94 (516)
365 2oxj_A Hybrid alpha/beta pepti 35.9 66 0.0023 22.2 4.6 29 530-558 2-30 (34)
366 3a00_A Guanylate kinase, GMP k 35.9 8.9 0.0003 36.0 0.4 15 146-160 4-18 (186)
367 1w9i_A Myosin II heavy chain; 35.9 19 0.00065 42.2 3.3 21 140-160 169-189 (770)
368 3nbx_X ATPase RAVA; AAA+ ATPas 35.6 17 0.00057 40.4 2.7 24 135-160 35-58 (500)
369 1ypw_A Transitional endoplasmi 35.5 15 0.00051 43.2 2.4 52 109-160 199-255 (806)
370 3m48_A General control protein 35.5 31 0.001 23.8 2.9 24 555-578 5-28 (33)
371 2ykg_A Probable ATP-dependent 35.4 16 0.00055 41.5 2.6 23 135-159 22-44 (696)
372 2v26_A Myosin VI; calmodulin-b 35.3 19 0.00067 42.2 3.3 21 140-160 137-157 (784)
373 2w83_C C-JUN-amino-terminal ki 35.3 1.9E+02 0.0063 23.8 9.1 43 553-602 33-75 (77)
374 3sop_A Neuronal-specific septi 35.1 11 0.00037 38.2 1.0 19 142-160 1-19 (270)
375 4emc_A Monopolin complex subun 34.7 1.1E+02 0.0036 29.5 7.6 50 546-595 23-72 (190)
376 1ly1_A Polynucleotide kinase; 34.5 12 0.00041 34.1 1.1 17 144-160 3-19 (181)
377 1r6b_X CLPA protein; AAA+, N-t 34.5 19 0.00065 41.7 3.0 41 112-160 184-224 (758)
378 3pxi_A Negative regulator of g 34.3 21 0.00073 41.3 3.5 41 112-160 178-218 (758)
379 1qvr_A CLPB protein; coiled co 34.3 22 0.00077 41.8 3.7 17 144-160 589-605 (854)
380 2yy0_A C-MYC-binding protein; 34.3 73 0.0025 24.3 5.3 33 570-602 18-50 (53)
381 1ye8_A Protein THEP1, hypothet 34.2 10 0.00036 35.7 0.6 15 146-160 3-17 (178)
382 1kk8_A Myosin heavy chain, str 34.1 20 0.0007 42.3 3.2 20 140-159 166-185 (837)
383 2og2_A Putative signal recogni 34.0 26 0.00088 37.2 3.7 17 144-160 158-174 (359)
384 1rj9_A FTSY, signal recognitio 33.9 12 0.00041 38.6 1.1 18 143-160 102-119 (304)
385 1qhx_A CPT, protein (chloramph 33.8 12 0.00042 34.2 1.1 17 144-160 4-20 (178)
386 3e1s_A Exodeoxyribonuclease V, 33.8 16 0.00055 41.2 2.2 18 143-160 204-221 (574)
387 2xzl_A ATP-dependent helicase 33.8 15 0.00053 43.1 2.1 17 144-160 376-392 (802)
388 1lvg_A Guanylate kinase, GMP k 33.8 11 0.00036 36.0 0.6 16 145-160 6-21 (198)
389 1g8x_A Myosin II heavy chain f 33.8 20 0.00069 43.3 3.2 20 140-159 169-188 (1010)
390 1nkp_B MAX protein, MYC proto- 33.7 1.1E+02 0.0039 24.9 6.9 64 541-604 10-80 (83)
391 1wle_A Seryl-tRNA synthetase; 33.6 1.8E+02 0.0061 32.2 10.5 18 483-500 69-86 (501)
392 2wjy_A Regulator of nonsense t 33.3 16 0.00055 43.0 2.2 17 144-160 372-388 (800)
393 1w7j_A Myosin VA; motor protei 33.3 22 0.00075 41.8 3.3 21 140-160 153-173 (795)
394 1uo4_A General control protein 33.2 50 0.0017 22.9 3.7 26 554-579 5-30 (34)
395 2ycu_A Non muscle myosin 2C, a 33.2 21 0.00073 43.0 3.3 20 140-159 143-162 (995)
396 4a4z_A Antiviral helicase SKI2 33.1 18 0.00061 43.6 2.6 23 135-159 48-70 (997)
397 4db1_A Myosin-7; S1DC, cardiac 32.9 23 0.00077 41.6 3.3 21 140-160 168-188 (783)
398 2efk_A CDC42-interacting prote 32.8 3.7E+02 0.013 26.5 20.1 11 421-431 10-20 (301)
399 1r6b_X CLPA protein; AAA+, N-t 32.8 26 0.0009 40.4 3.9 38 122-160 462-505 (758)
400 3trf_A Shikimate kinase, SK; a 32.6 13 0.00046 34.3 1.1 16 145-160 7-22 (185)
401 2j41_A Guanylate kinase; GMP, 32.6 13 0.00043 34.9 0.9 16 145-160 8-23 (207)
402 2ehv_A Hypothetical protein PH 32.6 12 0.00042 36.1 0.9 17 144-160 31-47 (251)
403 1gk6_A Vimentin; intermediate 31.9 1.3E+02 0.0044 23.2 6.5 26 572-597 22-47 (59)
404 2bdt_A BH3686; alpha-beta prot 31.9 13 0.00044 34.6 0.9 16 145-160 4-19 (189)
405 3iij_A Coilin-interacting nucl 31.6 13 0.00045 34.3 0.9 17 144-160 12-28 (180)
406 2d7d_A Uvrabc system protein B 31.6 32 0.0011 39.4 4.2 47 110-161 4-50 (661)
407 2eyq_A TRCF, transcription-rep 31.3 22 0.00076 43.5 3.0 35 121-159 606-640 (1151)
408 4dnd_A Syntaxin-10, SYN10; str 31.2 2.7E+02 0.0091 25.0 9.5 15 480-494 70-84 (130)
409 1j8m_F SRP54, signal recogniti 31.2 39 0.0013 34.5 4.5 16 145-160 100-115 (297)
410 3he5_A Synzip1; heterodimeric 31.2 1.5E+02 0.005 21.3 6.3 11 569-579 36-46 (49)
411 2oca_A DAR protein, ATP-depend 31.2 15 0.0005 40.1 1.3 34 117-160 112-145 (510)
412 3lnc_A Guanylate kinase, GMP k 31.1 16 0.00054 35.4 1.4 16 145-160 29-44 (231)
413 2efl_A Formin-binding protein 31.0 4E+02 0.014 26.3 18.1 14 419-432 15-28 (305)
414 3qne_A Seryl-tRNA synthetase, 31.0 1.1E+02 0.0039 33.6 8.3 51 554-604 44-97 (485)
415 4a2q_A RIG-I, retinoic acid in 30.8 20 0.00067 41.9 2.3 24 135-160 257-280 (797)
416 1gu4_A CAAT/enhancer binding p 30.6 71 0.0024 26.3 5.0 28 549-576 42-69 (78)
417 2dq0_A Seryl-tRNA synthetase; 30.6 1.3E+02 0.0043 32.9 8.6 28 575-602 73-100 (455)
418 1a93_B MAX protein, coiled coi 30.6 58 0.002 22.7 3.7 27 572-598 8-34 (34)
419 3c9i_A Tail needle protein GP2 30.5 3.8E+02 0.013 26.0 10.7 69 525-600 80-148 (242)
420 3uie_A Adenylyl-sulfate kinase 30.5 19 0.00065 34.0 1.8 20 141-160 23-42 (200)
421 1odf_A YGR205W, hypothetical 3 30.5 35 0.0012 34.8 3.9 36 125-160 11-48 (290)
422 4anj_A Unconventional myosin-V 30.5 26 0.00088 42.5 3.3 34 126-160 127-161 (1052)
423 3kta_A Chromosome segregation 30.4 13 0.00046 34.2 0.7 16 145-160 28-43 (182)
424 1znw_A Guanylate kinase, GMP k 30.3 14 0.00049 35.2 0.9 16 145-160 22-37 (207)
425 2qen_A Walker-type ATPase; unk 30.3 22 0.00076 35.9 2.4 17 144-160 32-48 (350)
426 3c3f_A Alpha/beta peptide with 30.2 83 0.0028 21.7 4.3 30 530-559 2-31 (34)
427 2w6b_A RHO guanine nucleotide 30.2 1.9E+02 0.0064 22.2 7.1 37 561-597 14-50 (56)
428 1uaa_A REP helicase, protein ( 30.2 15 0.00051 41.9 1.2 19 142-160 14-32 (673)
429 1oyw_A RECQ helicase, ATP-depe 30.0 12 0.0004 41.6 0.2 23 135-159 34-56 (523)
430 4a2w_A RIG-I, retinoic acid in 29.9 20 0.00069 42.8 2.3 35 116-160 246-280 (936)
431 2px0_A Flagellar biosynthesis 29.8 14 0.00047 38.0 0.7 17 144-160 106-122 (296)
432 2q6q_A Spindle POLE BODY compo 29.8 2.2E+02 0.0074 22.9 8.2 42 554-595 7-48 (74)
433 2pt7_A CAG-ALFA; ATPase, prote 29.8 12 0.00043 38.9 0.4 19 140-160 170-188 (330)
434 4fi5_A Nucleoprotein; structur 29.5 2.9E+02 0.0098 24.3 8.8 66 480-564 25-90 (113)
435 2a01_A Apolipoprotein A-I; fou 29.5 4.1E+02 0.014 26.0 11.8 12 590-601 218-229 (243)
436 1x8y_A Lamin A/C; structural p 29.4 2.4E+02 0.0083 23.3 8.5 24 560-583 59-82 (86)
437 2orw_A Thymidine kinase; TMTK, 29.4 13 0.00046 35.1 0.5 16 145-160 5-20 (184)
438 2gza_A Type IV secretion syste 29.3 13 0.00044 39.3 0.4 19 140-160 174-192 (361)
439 2v6i_A RNA helicase; membrane, 29.3 19 0.00066 38.7 1.8 16 145-160 4-19 (431)
440 1nkp_A C-MYC, MYC proto-oncoge 29.1 1.5E+02 0.0052 24.7 7.0 64 541-604 14-85 (88)
441 2fna_A Conserved hypothetical 29.1 18 0.00061 36.7 1.4 17 144-160 31-47 (357)
442 1gd2_E Transcription factor PA 29.0 98 0.0034 25.0 5.5 31 550-580 36-66 (70)
443 2xv5_A Lamin-A/C; structural p 28.9 2E+02 0.0069 23.3 7.5 25 559-583 35-59 (74)
444 1f2t_A RAD50 ABC-ATPase; DNA d 28.7 17 0.0006 33.0 1.1 16 145-160 25-40 (149)
445 1kht_A Adenylate kinase; phosp 28.7 16 0.00055 33.6 0.9 17 144-160 4-20 (192)
446 3etw_A Adhesin A; antiparallel 28.6 3.1E+02 0.011 24.3 13.3 23 561-583 79-101 (119)
447 2i3b_A HCR-ntpase, human cance 28.5 15 0.00051 35.1 0.7 16 145-160 3-18 (189)
448 1ses_A Seryl-tRNA synthetase; 28.5 2.4E+02 0.0083 30.3 10.4 31 572-602 65-95 (421)
449 2w83_C C-JUN-amino-terminal ki 28.4 2.5E+02 0.0084 23.1 9.6 37 569-605 35-71 (77)
450 1kag_A SKI, shikimate kinase I 28.4 16 0.00056 33.1 0.9 16 145-160 6-21 (173)
451 3dm5_A SRP54, signal recogniti 28.2 40 0.0014 36.8 4.1 18 143-160 100-117 (443)
452 3vaa_A Shikimate kinase, SK; s 28.2 18 0.00061 34.2 1.1 16 145-160 27-42 (199)
453 3lay_A Zinc resistance-associa 28.1 2.7E+02 0.0092 26.3 9.4 14 570-583 112-125 (175)
454 2ga8_A Hypothetical 39.9 kDa p 28.1 35 0.0012 36.2 3.5 21 140-160 21-41 (359)
455 1t2k_D Cyclic-AMP-dependent tr 28.1 1.3E+02 0.0043 23.3 5.9 34 546-579 25-58 (61)
456 3c3g_A Alpha/beta peptide with 28.0 97 0.0033 21.3 4.3 29 531-559 2-30 (33)
457 2z83_A Helicase/nucleoside tri 27.8 21 0.00073 38.7 1.8 15 145-159 23-37 (459)
458 2ze6_A Isopentenyl transferase 27.8 18 0.0006 36.0 1.1 15 145-159 3-17 (253)
459 2l3l_A Tubulin-specific chaper 27.7 1.4E+02 0.0049 26.1 6.9 44 563-606 57-105 (111)
460 2dgc_A Protein (GCN4); basic d 27.6 95 0.0033 24.4 5.1 31 550-580 30-60 (63)
461 3k29_A Putative uncharacterize 27.6 3.9E+02 0.013 25.1 12.5 20 571-590 106-125 (169)
462 1knq_A Gluconate kinase; ALFA/ 27.5 17 0.0006 33.2 0.9 17 144-160 9-25 (175)
463 1zbt_A RF-1, peptide chain rel 27.4 64 0.0022 34.4 5.3 87 579-665 88-199 (371)
464 3kb2_A SPBC2 prophage-derived 27.4 19 0.00064 32.5 1.1 16 145-160 3-18 (173)
465 2yhs_A FTSY, cell division pro 27.4 29 0.001 38.5 2.8 17 144-160 294-310 (503)
466 1gk6_A Vimentin; intermediate 27.3 1.8E+02 0.0061 22.4 6.6 24 558-581 29-52 (59)
467 1z6g_A Guanylate kinase; struc 27.2 15 0.00052 35.5 0.4 15 146-160 26-40 (218)
468 3d5a_X RF1, peptide chain rele 27.2 4.9E+02 0.017 27.4 12.0 87 579-665 70-181 (354)
469 2b8t_A Thymidine kinase; deoxy 27.1 19 0.00064 35.5 1.1 18 143-160 12-29 (223)
470 2r2a_A Uncharacterized protein 27.0 16 0.00056 35.2 0.6 16 145-160 7-22 (199)
471 2js5_A Uncharacterized protein 26.7 1.1E+02 0.0038 24.8 5.4 31 529-559 3-33 (71)
472 3nr7_A DNA-binding protein H-N 26.7 1.9E+02 0.0066 24.2 7.1 51 559-609 26-76 (86)
473 3t5d_A Septin-7; GTP-binding p 26.6 19 0.00064 36.1 1.0 21 140-160 5-25 (274)
474 3kl4_A SRP54, signal recogniti 26.5 52 0.0018 35.7 4.6 18 143-160 97-114 (433)
475 1gku_B Reverse gyrase, TOP-RG; 26.5 26 0.0009 42.4 2.5 22 135-158 65-86 (1054)
476 1v5w_A DMC1, meiotic recombina 26.4 30 0.001 36.1 2.6 29 132-160 108-139 (343)
477 1yks_A Genome polyprotein [con 26.4 22 0.00074 38.5 1.6 21 138-160 5-25 (440)
478 3m48_A General control protein 26.2 81 0.0028 21.7 3.7 26 532-557 3-28 (33)
479 2iut_A DNA translocase FTSK; n 26.0 17 0.00058 41.1 0.6 17 144-160 215-231 (574)
480 3lss_A Seryl-tRNA synthetase; 25.9 3.1E+02 0.011 30.1 10.7 34 523-556 38-71 (484)
481 1vma_A Cell division protein F 25.7 19 0.00065 37.2 0.9 17 144-160 105-121 (306)
482 1uf9_A TT1252 protein; P-loop, 25.5 24 0.00081 32.8 1.5 21 140-160 5-25 (203)
483 2rhm_A Putative kinase; P-loop 25.4 19 0.00064 33.3 0.7 13 146-158 8-20 (193)
484 1d7m_A Cortexillin I; coiled-c 25.4 3.1E+02 0.01 23.1 13.5 90 523-612 5-94 (101)
485 2qor_A Guanylate kinase; phosp 25.4 20 0.00068 34.0 0.9 13 146-158 15-27 (204)
486 1moz_A ARL1, ADP-ribosylation 25.3 27 0.00094 31.5 1.8 32 129-160 3-35 (183)
487 1a5t_A Delta prime, HOLB; zinc 25.2 37 0.0013 35.0 3.0 32 128-159 8-40 (334)
488 2p4v_A Transcription elongatio 25.1 1.8E+02 0.0062 26.8 7.5 53 552-604 11-72 (158)
489 3rc3_A ATP-dependent RNA helic 25.1 19 0.00066 41.5 0.9 13 146-158 158-170 (677)
490 3m9b_A Proteasome-associated A 25.1 60 0.0021 32.6 4.3 68 530-598 25-95 (251)
491 2zj8_A DNA helicase, putative 25.1 17 0.00058 41.8 0.4 26 132-159 29-55 (720)
492 1tev_A UMP-CMP kinase; ploop, 24.9 22 0.00075 32.7 1.1 14 145-158 5-18 (196)
493 4dci_A Uncharacterized protein 24.9 4.1E+02 0.014 24.5 9.9 64 542-605 28-104 (150)
494 1y63_A LMAJ004144AAA protein; 24.8 20 0.0007 33.3 0.9 13 146-158 13-25 (184)
495 3s9g_A Protein hexim1; cyclin 24.8 3.3E+02 0.011 23.4 8.7 65 553-617 33-97 (104)
496 3cm0_A Adenylate kinase; ATP-b 24.7 23 0.00077 32.6 1.1 14 145-158 6-19 (186)
497 2xgj_A ATP-dependent RNA helic 24.7 26 0.00088 42.4 1.9 26 132-159 92-117 (1010)
498 3he5_A Synzip1; heterodimeric 24.7 2E+02 0.0067 20.7 6.2 45 538-582 5-49 (49)
499 1w4r_A Thymidine kinase; type 24.7 23 0.00077 34.4 1.1 27 134-160 11-38 (195)
500 3q0x_A Centriole protein; cent 24.6 2.9E+02 0.0099 27.3 9.1 57 541-597 162-218 (228)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.9e-91 Score=755.93 Aligned_cols=344 Identities=38% Similarity=0.578 Sum_probs=287.6
Q ss_pred CCCCeEEEEecCCCCchhhhccCCCCceEEeCCC--ceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHh
Q 005753 62 VPGRVRVAVRLRTRNAEEMVADADFGDCVELLPE--LKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVL 139 (679)
Q Consensus 62 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l 139 (679)
..++|+|+|||||+++.|...+. ..++.+.+. ...+.+ ..+.|+||+||+++++|++||+.++.|+|++++
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~~i~~-----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 81 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEEKAGS--KFVVKFPNNVEENCISI-----AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVL 81 (365)
T ss_dssp CEEECEEEEEECCCCHHHHHTTC--CBCEECCSSSTTCEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CCCCeEEEEEcCcCChhHhccCC--ceEEEeCCCCCCcEEEE-----CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHh
Confidence 35899999999999999976543 345555543 333333 347899999999999999999999999999999
Q ss_pred cCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCCCCCCcc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLDPTNDNI 215 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~~~~~~l 215 (679)
+|||+||||||||||||||||.|. .+++..+|||||++++||..+... .+.|+|||+|||||+|+|||++...++
T Consensus 82 ~G~n~tifAYGqTGSGKTyTm~G~-~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l 160 (365)
T 2y65_A 82 AGYNGTIFAYGQTSSGKTHTMEGV-IGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNL 160 (365)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBS-TTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSB
T ss_pred CCCceEEEeecCCCCCCceEEecC-CCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCc
Confidence 999999999999999999999874 345667899999999999988542 458999999999999999999999999
Q ss_pred eeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCcc
Q 005753 216 SIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSH 295 (679)
Q Consensus 216 ~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~ 295 (679)
.+++|+..| ++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 161 ~i~e~~~~~-~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~------------- 226 (365)
T 2y65_A 161 SVHEDKNRV-PYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN------------- 226 (365)
T ss_dssp CEEECSSSC-EEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT-------------
T ss_pred eEEECCCCC-EEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC-------------
Confidence 999998755 899999999999999999999999999999999999999999999999998764321
Q ss_pred ccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccC-CCCccccCcccccccccccC
Q 005753 296 MVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEG-SAYVPVRDSKLTRLLRDSFG 374 (679)
Q Consensus 296 ~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~-~~~VPyRdSKLTrLLqdsLg 374 (679)
.....|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||
T Consensus 227 -------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLg 299 (365)
T 2y65_A 227 -------QKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLG 299 (365)
T ss_dssp -------CCEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTT
T ss_pred -------CCEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcC
Confidence 2346799999999999999999999999999999999999999999999987 57999999999999999999
Q ss_pred CCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHH
Q 005753 375 GTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKL 434 (679)
Q Consensus 375 Gnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l~~e~~~L 434 (679)
||++|+||+||||+..+++||++||+||+||++|+|.|.+|++.+.+.+.++++.+++++
T Consensus 300 Gnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~ 359 (365)
T 2y65_A 300 GNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKN 359 (365)
T ss_dssp SSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC--------
T ss_pred CCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888888777766654
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1.4e-90 Score=749.73 Aligned_cols=345 Identities=38% Similarity=0.608 Sum_probs=287.3
Q ss_pred CCCCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCC----CCCcceeeccccCCCCChHHHHHHhhHHHHH
Q 005753 61 GVPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNN----WDAETYEFDEVLTEFASQKRVYQAVAKPVVE 136 (679)
Q Consensus 61 ~~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~ 136 (679)
+..++|+|+|||||++..|...+. ..|+.+++....+.+.... ...+.|+||+||+++++|++||+.+++|+|+
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~--~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~ 95 (372)
T 3b6u_A 18 GSSESVRVVVRCRPMNGKEKAASY--DKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVD 95 (372)
T ss_dssp ---CBCEEEEEECCCCHHHHHTTC--CBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCC--ceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHH
Confidence 346899999999999999976543 5677777766666664432 3467899999999999999999999999999
Q ss_pred HHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC---CCeEEEEEEEeecceeeecCCCCC-
Q 005753 137 SVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD---TDSVTVSYLQLYMETIQDLLDPTN- 212 (679)
Q Consensus 137 ~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~---~~~V~vS~lEIYnE~v~DLL~~~~- 212 (679)
++++|||+||||||||||||||||+|. .+++..+|||||++++||..+... .+.|+|||+|||||+|+|||++..
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM~G~-~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 174 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTMEGI-RGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQT 174 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHHTBC-TTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTT
T ss_pred HHhCCCeeeEEeecCCCCCCCEeEecC-CCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCC
Confidence 999999999999999999999999874 345677899999999999988653 457999999999999999999864
Q ss_pred CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCC
Q 005753 213 DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGN 292 (679)
Q Consensus 213 ~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~ 292 (679)
..+.+++++..| ++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+...+.+
T Consensus 175 ~~l~i~e~~~~~-v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~--------- 244 (372)
T 3b6u_A 175 KRLELKERPDTG-VYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLD--------- 244 (372)
T ss_dssp CCBCEEEETTTE-EEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-------------
T ss_pred CCceEEECCCCc-EecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCC---------
Confidence 578999998755 9999999999999999999999999999999999999999999999999987543211
Q ss_pred CccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC-CCccccCccccccccc
Q 005753 293 NSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS-AYVPVRDSKLTRLLRD 371 (679)
Q Consensus 293 ~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~-~~VPyRdSKLTrLLqd 371 (679)
.....+.|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|+++. .|||||||||||||||
T Consensus 245 --------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqd 316 (372)
T 3b6u_A 245 --------GENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQD 316 (372)
T ss_dssp ---------CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTT
T ss_pred --------CCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 0134678999999999999999999999999999999999999999999999865 6999999999999999
Q ss_pred ccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHHHHHH
Q 005753 372 SFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRL 427 (679)
Q Consensus 372 sLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l 427 (679)
+||||++|+||+||||+..+++||++||+||+||++|+|.|.+|++... .++++|
T Consensus 317 sLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~-~~~~~~ 371 (372)
T 3b6u_A 317 SLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREF 371 (372)
T ss_dssp TTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC-----------
T ss_pred hcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHH-HHHHhc
Confidence 9999999999999999999999999999999999999999999987643 454443
No 3
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=9.6e-90 Score=740.57 Aligned_cols=335 Identities=38% Similarity=0.623 Sum_probs=302.4
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCc
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGY 142 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~ 142 (679)
.++|+|+|||||++..|...+. ..|+.+.+.... .+. .....+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 5 ~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~-~~~-~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 80 (355)
T 1goj_A 5 ANSIKVVARFRPQNRVEIESGG--QPIVTFQGPDTC-TVD-SKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGY 80 (355)
T ss_dssp SCBCEEEEEECCCCHHHHTTTC--CBCEEECSTTEE-EEC-STTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTC
T ss_pred CCCeEEEEECCCCChHHhhcCC--ceEEEEcCCCeE-EEc-cCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCC
Confidence 4799999999999999975543 467777665432 222 223467899999999999999999999999999999999
Q ss_pred ceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCCCCCCcceee
Q 005753 143 NGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLDPTNDNISIA 218 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~~~~~~l~i~ 218 (679)
|+||||||||||||||||+|...+++..+|||||++++||..+... .+.|+|||+|||||+|+|||++....+.++
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~ 160 (355)
T 1goj_A 81 NGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVH 160 (355)
T ss_dssp CEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEE
T ss_pred cceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeE
Confidence 9999999999999999998866556778999999999999988643 458999999999999999999998999999
Q ss_pred ecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCccccc
Q 005753 219 EDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVK 298 (679)
Q Consensus 219 ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~~ 298 (679)
+++..| ++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 161 e~~~~g-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---------------- 223 (355)
T 1goj_A 161 EEKNRG-VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET---------------- 223 (355)
T ss_dssp EETTTE-EEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT----------------
T ss_pred EcCCCC-EeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC----------------
Confidence 998755 999999999999999999999999999999999999999999999999998764321
Q ss_pred cCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccC-CCCccccCcccccccccccCCCC
Q 005753 299 TLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEG-SAYVPVRDSKLTRLLRDSFGGTA 377 (679)
Q Consensus 299 ~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~-~~~VPyRdSKLTrLLqdsLgGns 377 (679)
.....|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||+
T Consensus 224 ----~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns 299 (355)
T 1goj_A 224 ----GSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNS 299 (355)
T ss_dssp ----TEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSC
T ss_pred ----CceeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCC
Confidence 3456899999999999999999999999999999999999999999999986 58999999999999999999999
Q ss_pred ceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHH
Q 005753 378 RTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKS 422 (679)
Q Consensus 378 kt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~ 422 (679)
+|+||+||||+..+++||++||+||+||++|+|.|.+|++.+...
T Consensus 300 ~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~ 344 (355)
T 1goj_A 300 RTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE 344 (355)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSS
T ss_pred cEEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHHH
Confidence 999999999999999999999999999999999999999876543
No 4
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-90 Score=749.89 Aligned_cols=338 Identities=37% Similarity=0.556 Sum_probs=250.4
Q ss_pred CCCCCCeEEEEecCCCCchhhhccCCCCceEEeC-CCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHH
Q 005753 60 AGVPGRVRVAVRLRTRNAEEMVADADFGDCVELL-PELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESV 138 (679)
Q Consensus 60 ~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~ 138 (679)
.+..++|+|+|||||++..|...+. ..|+... +....+....+....+.|+||+||+++++|++||+.++.|+|+++
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~ 94 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASD--PPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHL 94 (388)
T ss_dssp SSCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHH
T ss_pred cCCCCCEEEEEECCCCChhhhccCC--CceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHh
Confidence 3446899999999999999864432 3455432 222112111222345689999999999999999999999999999
Q ss_pred hcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-------CCeEEEEEEEeecceeeecCCCC
Q 005753 139 LDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-------TDSVTVSYLQLYMETIQDLLDPT 211 (679)
Q Consensus 139 l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-------~~~V~vS~lEIYnE~v~DLL~~~ 211 (679)
++|||+||||||||||||||||+|. +..+|||||++++||..+... .+.|+|||+|||||+|+|||++.
T Consensus 95 l~G~N~tifAYGqTGSGKTyTM~G~----~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~ 170 (388)
T 3bfn_A 95 LEGQNASVLAYGPTGAGKTHTMLGS----PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPA 170 (388)
T ss_dssp TTTCCEEEEEESCTTSSHHHHHTBC----SSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCS
T ss_pred hcCceeeEeeecCCCCCCCeEeecC----ccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccC
Confidence 9999999999999999999999774 345899999999999987531 34799999999999999999999
Q ss_pred CCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCC
Q 005753 212 NDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENG 291 (679)
Q Consensus 212 ~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~ 291 (679)
...+.|++|+. |.++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 171 ~~~l~ired~~-~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~--------- 240 (388)
T 3bfn_A 171 SGDLVIREDCR-GNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLA--------- 240 (388)
T ss_dssp SCBCCCEECTT-SCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESST---------
T ss_pred CCCceEEEcCC-CCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCC---------
Confidence 88999999987 45999999999999999999999999999999999999999999999999998754321
Q ss_pred CCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccccccccc
Q 005753 292 NNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRD 371 (679)
Q Consensus 292 ~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqd 371 (679)
+.....|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|+++..|||||||||||||||
T Consensus 241 ----------~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqd 310 (388)
T 3bfn_A 241 ----------PFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQD 310 (388)
T ss_dssp ----------TCCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTT
T ss_pred ----------CCceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHH
Confidence 0234689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHH
Q 005753 372 SFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSL 423 (679)
Q Consensus 372 sLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l 423 (679)
+||||++|+|||||||+..+++||++||+||+||++|+|.|.+|++.+...+
T Consensus 311 sLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l 362 (388)
T 3bfn_A 311 SLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHAL 362 (388)
T ss_dssp SSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC--------------
T ss_pred hhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999887665
No 5
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=5e-90 Score=744.25 Aligned_cols=335 Identities=36% Similarity=0.545 Sum_probs=278.6
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC----CCCCcceeeccccCCCCChHHHHHHhhHHHHHHH
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN----NWDAETYEFDEVLTEFASQKRVYQAVAKPVVESV 138 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~ 138 (679)
.++|+|+|||||++..|...+. ..++.+++....+.+..+ ....+.|+||+||+++++|++||+.++.|+|+++
T Consensus 7 ~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 7 GKNIQVVVRCRPFNLAERKASA--HSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp --CCEEEEEECCCCHHHHHTTC--CCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCChhhhhcCC--ceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 5899999999999999976543 457777776555554332 1235789999999999999999999999999999
Q ss_pred hcCcceEEEeeccCCCCccccccCCCCCC-------CCCcchHHHHHHHHHhccccC--CCeEEEEEEEeecceeeecCC
Q 005753 139 LDGYNGTVMAYGQTGTGKTYTLGPLGEED-------PATRGIMVRAMEDILAGVSLD--TDSVTVSYLQLYMETIQDLLD 209 (679)
Q Consensus 139 l~G~N~tIfaYGqTgSGKTyTm~G~g~~~-------~~~~GIipra~~~LF~~i~~~--~~~V~vS~lEIYnE~v~DLL~ 209 (679)
++|||+||||||||||||||||+|....+ ...+|||||++++||+.+... .+.|+|||+|||||+|+|||+
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~ 164 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLN 164 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETTC
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehhc
Confidence 99999999999999999999998854321 224799999999999998764 357999999999999999999
Q ss_pred CCC---CcceeeecCC-CCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccc
Q 005753 210 PTN---DNISIAEDPK-TGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVA 285 (679)
Q Consensus 210 ~~~---~~l~i~ed~~-~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~ 285 (679)
|.. ..+.+++|+. .|.++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....+
T Consensus 165 ~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~-- 242 (359)
T 1x88_A 165 PSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID-- 242 (359)
T ss_dssp TTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTT--
T ss_pred ccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCC--
Confidence 864 4689999974 3569999999999999999999999999999999999999999999999999986542110
Q ss_pred cCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccc
Q 005753 286 HSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKL 365 (679)
Q Consensus 286 ~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKL 365 (679)
.......|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|+++..|||||||||
T Consensus 243 ---------------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkL 307 (359)
T 1x88_A 243 ---------------GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 307 (359)
T ss_dssp ---------------SCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHH
T ss_pred ---------------CCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchH
Confidence 01345789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccccccccc
Q 005753 366 TRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKE 416 (679)
Q Consensus 366 TrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~ 416 (679)
||||||+||||++|+|||||||+..+++||++||+||+||++|+|.|.+|+
T Consensus 308 T~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 308 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp HHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred HHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999999999999999999999999986
No 6
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=9.6e-90 Score=738.78 Aligned_cols=332 Identities=36% Similarity=0.561 Sum_probs=270.6
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC---------CCCCcceeeccccCCCCChHHHHHHhhHH
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN---------NWDAETYEFDEVLTEFASQKRVYQAVAKP 133 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~F~FD~VF~~~asQ~~Vy~~~~~p 133 (679)
.++|+|+||+||++..|...+. ..|+.+++....+.+... ....+.|+||+||+++++|++||+.++.|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~p 80 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENA--LNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKP 80 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTC--CBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHH
T ss_pred CCCeEEEEEeCCCChhhhccCC--ceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHH
Confidence 4799999999999999976543 567777766555555332 23467899999999999999999999999
Q ss_pred HHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCC
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLD 209 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~ 209 (679)
+|+++++|||+||||||||||||||||+|.. ..+|||||++++||+.+... .+.|++||+|||||+|+|||+
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 156 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK----EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK 156 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTT
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEeecCC----ccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEccc
Confidence 9999999999999999999999999997743 46899999999999988632 357999999999999999998
Q ss_pred CCCCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCC
Q 005753 210 PTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGE 289 (679)
Q Consensus 210 ~~~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~ 289 (679)
+ ...+.+++|+..| ++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+......
T Consensus 157 ~-~~~l~i~e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~------ 228 (350)
T 2vvg_A 157 N-NTKLPLKEDKTRG-IYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIEN------ 228 (350)
T ss_dssp T-EEEECEEEETTTE-EEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC---------
T ss_pred C-CcCceeeEcCCCC-EEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCC------
Confidence 4 4578999998755 9999999999999999999999999999999999999999999999999987543210
Q ss_pred CCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccccccc
Q 005753 290 NGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLL 369 (679)
Q Consensus 290 ~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLL 369 (679)
....+.|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|++++.|||||||||||||
T Consensus 229 ------------~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL 296 (350)
T 2vvg_A 229 ------------KEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLL 296 (350)
T ss_dssp -------------CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHT
T ss_pred ------------CccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHH
Confidence 13467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCH
Q 005753 370 RDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDY 420 (679)
Q Consensus 370 qdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~ 420 (679)
||+||||++|+||+||||+..+++||++||+||+||++|+|.|.+|++.+.
T Consensus 297 qdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 297 QDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp TTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred HHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 999999999999999999999999999999999999999999999987653
No 7
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-89 Score=743.12 Aligned_cols=340 Identities=34% Similarity=0.536 Sum_probs=279.0
Q ss_pred CCCCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEec-cCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHh
Q 005753 61 GVPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLR-KNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVL 139 (679)
Q Consensus 61 ~~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l 139 (679)
...++|+|+|||||++..|...+. ..|+.+......+... ......+.|+||+||+++++|++||+.++.|+|++++
T Consensus 20 ~~~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l 97 (373)
T 2wbe_C 20 KSNQNIQVYVRVRPLNSRERCIRS--AEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVL 97 (373)
T ss_dssp CCCEECEEEEEECCCCHHHHHHTC--CBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCC--CceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHh
Confidence 345899999999999999976543 4566654433222221 2233467899999999999999999999999999999
Q ss_pred cCcceEEEeeccCCCCccccccCCCCC-------CCCCcchHHHHHHHHHhccccC--CCeEEEEEEEeecceeeecCCC
Q 005753 140 DGYNGTVMAYGQTGTGKTYTLGPLGEE-------DPATRGIMVRAMEDILAGVSLD--TDSVTVSYLQLYMETIQDLLDP 210 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm~G~g~~-------~~~~~GIipra~~~LF~~i~~~--~~~V~vS~lEIYnE~v~DLL~~ 210 (679)
+|||+||||||||||||||||+|.... +...+|||||++++||+.+... .+.|+|||+|||||+|+|||++
T Consensus 98 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~ 177 (373)
T 2wbe_C 98 NGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLST 177 (373)
T ss_dssp HTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEESSCT
T ss_pred CCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEECCCC
Confidence 999999999999999999999885431 3457899999999999988643 5689999999999999999987
Q ss_pred CC-CcceeeecC-CCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCC
Q 005753 211 TN-DNISIAEDP-KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSG 288 (679)
Q Consensus 211 ~~-~~l~i~ed~-~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~ 288 (679)
.. ..+.+++|+ ..|.++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.....+.+
T Consensus 178 ~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~----- 252 (373)
T 2wbe_C 178 DDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIE----- 252 (373)
T ss_dssp TSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTT-----
T ss_pred CCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCC-----
Confidence 64 467888885 45779999999999999999999999999999999999999999999999999986432110
Q ss_pred CCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCC-cccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccccc
Q 005753 289 ENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSE-GHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTR 367 (679)
Q Consensus 289 ~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~-g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTr 367 (679)
.....+.|+|+|||||||||..++++. |.|++|+.+||+||++||+||.+|+++..|||||||||||
T Consensus 253 ------------~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~ 320 (373)
T 2wbe_C 253 ------------GEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTR 320 (373)
T ss_dssp ------------TCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHH
T ss_pred ------------CCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHH
Confidence 013467899999999999999999987 9999999999999999999999999999999999999999
Q ss_pred ccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccC
Q 005753 368 LLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFD 419 (679)
Q Consensus 368 LLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~ 419 (679)
||||+||||++|+||+||||+..+++||++||+||+||++|+|.|.+|++.+
T Consensus 321 lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 321 LLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp HTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred HHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 9999999999999999999999999999999999999999999999998754
No 8
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=3.3e-89 Score=738.80 Aligned_cols=342 Identities=33% Similarity=0.496 Sum_probs=297.3
Q ss_pred CCCCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhc
Q 005753 61 GVPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLD 140 (679)
Q Consensus 61 ~~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~ 140 (679)
++.++|+|+|||||++..|...+. ..++.. ++...+.........+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~ 77 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKE--RNAIRS-VDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVD 77 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTC--CBCEEE-CSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHT
T ss_pred CCCCCeEEEEECCCCChhhccCCC--cEEEEc-CCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhc
Confidence 357899999999999999975543 122222 223334433333455799999999999999999999 6999999999
Q ss_pred CcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCCCCC---C
Q 005753 141 GYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLDPTN---D 213 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~~~~---~ 213 (679)
|||+||||||||||||||||+|.. .++|||||++++||..+... .+.|++||+|||||+|+|||+|.. .
T Consensus 78 G~n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 153 (369)
T 3cob_A 78 GYNVCIFAYGQTGSGKTFTIYGAD----SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRL 153 (369)
T ss_dssp TCEEEEEEEECTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCC
T ss_pred CCceEEEEECCCCCCCeEeecCCC----CCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCc
Confidence 999999999999999999997743 46899999999999988654 357999999999999999999753 5
Q ss_pred cceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCC
Q 005753 214 NISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNN 293 (679)
Q Consensus 214 ~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~ 293 (679)
.+.+++|+. |.++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 154 ~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------- 221 (369)
T 3cob_A 154 KLDIKKDSK-GMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT----------- 221 (369)
T ss_dssp CCEEEECTT-SCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT-----------
T ss_pred ceEEEECCC-CCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC-----------
Confidence 789999986 55999999999999999999999999999999999999999999999999998764321
Q ss_pred ccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccccccccccc
Q 005753 294 SHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSF 373 (679)
Q Consensus 294 s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsL 373 (679)
.....|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|++++.|||||||||||||||+|
T Consensus 222 ---------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsL 292 (369)
T 3cob_A 222 ---------QAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSL 292 (369)
T ss_dssp ---------CCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTT
T ss_pred ---------CcEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhc
Confidence 24578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHH
Q 005753 374 GGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDYKSLARRLDIQLDKL 434 (679)
Q Consensus 374 gGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~~~l~~~l~~e~~~L 434 (679)
||||+|+|||||||+..+++||++||+||+||++|+|.|.+|.+. ..+.+|+.++..+
T Consensus 293 gGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~---~ei~~L~~~l~~~ 350 (369)
T 3cob_A 293 GGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS---KEVARLKKLVSYW 350 (369)
T ss_dssp TSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC---HHHHHHHHHTTCC
T ss_pred CCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH---HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876 2334444444433
No 9
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.6e-89 Score=727.05 Aligned_cols=316 Identities=41% Similarity=0.618 Sum_probs=286.4
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCc
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGY 142 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~ 142 (679)
.++|+|+|||||+++.|...+. ..++.+.++. .+.+ ..+.|.||+||+++++|++||+.+++|+|+++++||
T Consensus 6 ~~~i~V~vRvRP~~~~E~~~~~--~~~~~~~~~~-~~~~-----~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~ 77 (325)
T 1bg2_A 6 ECNIKVMCRFRPLNESEVNRGD--KYIAKFQGED-TVVI-----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGY 77 (325)
T ss_dssp SCEEEEEEEECCCCHHHHHHTC--CBCCEEETTT-EEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred CCCEEEEEEcCCCChhHhccCC--eeEEEECCCC-eEEE-----CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCC
Confidence 5899999999999999976653 3455554433 3333 247899999999999999999999999999999999
Q ss_pred ceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhcccc----CCCeEEEEEEEeecceeeecCCCCCCcceee
Q 005753 143 NGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSL----DTDSVTVSYLQLYMETIQDLLDPTNDNISIA 218 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~----~~~~V~vS~lEIYnE~v~DLL~~~~~~l~i~ 218 (679)
|+||||||||||||||||.|. ..++..+|||||++++||+.+.. ..+.|+|||+|||||+|+|||++.+.++.++
T Consensus 78 n~tifAYGqTGSGKTyTm~G~-~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~ 156 (325)
T 1bg2_A 78 NGTIFAYGQTSSGKTHTMEGK-LHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVH 156 (325)
T ss_dssp CEEEEEECSTTSSHHHHHTBS-TTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEE
T ss_pred eEEEEEECCCCCCCceEeccc-CCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEE
Confidence 999999999999999999884 34566789999999999998853 2458999999999999999999999999999
Q ss_pred ecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCccccc
Q 005753 219 EDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVK 298 (679)
Q Consensus 219 ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~~ 298 (679)
+|+..| ++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 157 e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---------------- 219 (325)
T 1bg2_A 157 EDKNRV-PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT---------------- 219 (325)
T ss_dssp ECTTSC-EEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT----------------
T ss_pred ECCCCC-EEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC----------------
Confidence 998754 899999999999999999999999999999999999999999999999998764321
Q ss_pred cCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCcccccccccccCCCCc
Q 005753 299 TLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSFGGTAR 378 (679)
Q Consensus 299 ~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgGnsk 378 (679)
.....|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|+++..|||||||||||||||+||||++
T Consensus 220 ----~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~ 295 (325)
T 1bg2_A 220 ----EQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295 (325)
T ss_dssp ----CCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCE
T ss_pred ----CcEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCc
Confidence 2346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 379 TSLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 379 t~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
|+||+||||+..+++||++||+||+|||+|
T Consensus 296 t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 296 TTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred EEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999987
No 10
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=8.9e-89 Score=751.22 Aligned_cols=333 Identities=32% Similarity=0.549 Sum_probs=273.5
Q ss_pred CCCCCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC---------------CCCCcceeeccccCC-----
Q 005753 60 AGVPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN---------------NWDAETYEFDEVLTE----- 119 (679)
Q Consensus 60 ~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~---------------~~~~~~F~FD~VF~~----- 119 (679)
.+..++|+|+|||||+++.|...+. .+++.+++....+.+..+ ....+.|+||+||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~ 111 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNA--ECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTED 111 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTC--CCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTS
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCC--ceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCC
Confidence 4456899999999999999976543 456677765544333211 123578999999976
Q ss_pred --CCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-------CC
Q 005753 120 --FASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-------TD 190 (679)
Q Consensus 120 --~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-------~~ 190 (679)
+++|++||+.++.|+|+++|+|||+||||||||||||||||+|. +..+|||||++++||..+... .+
T Consensus 112 ~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~----~~~~GIipr~~~~lF~~i~~~~~~~~~~~~ 187 (443)
T 2owm_A 112 EHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT----PDQPGLIPRTCEDLFQRIASAQDETPNISY 187 (443)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCC----TTSCCHHHHHHHHHHHHHHHTTTTSTTCEE
T ss_pred ccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecC----CCCCchHHHHHHHHHHHHHhhhcccCCceE
Confidence 48999999999999999999999999999999999999999774 345899999999999987642 35
Q ss_pred eEEEEEEEeecceeeecCCCC-----CCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhccccccccccccc
Q 005753 191 SVTVSYLQLYMETIQDLLDPT-----NDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESS 265 (679)
Q Consensus 191 ~V~vS~lEIYnE~v~DLL~~~-----~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SS 265 (679)
.|+|||+|||||+|+|||++. ...+.|++|+..| ++|.||+++.|.|++|++.+|..|.++|++++|.||..||
T Consensus 188 ~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g-~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SS 266 (443)
T 2owm_A 188 NVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEG-PYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSS 266 (443)
T ss_dssp EEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTE-EEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCT
T ss_pred EEEEEEEEEECCEeeEccCccccCCcccccceeECCCCC-EeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccC
Confidence 799999999999999999873 2358999998755 9999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEEEeecccccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHH
Q 005753 266 RSHAFLMVHVKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALG 345 (679)
Q Consensus 266 RSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg 345 (679)
|||+||+|+|.+....... .....+.|+|+|||||||||.+++++.|.|++|+.+||+||++||
T Consensus 267 RSH~Ifti~v~~~~~~~~~----------------~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg 330 (443)
T 2owm_A 267 RSHAVFTIMLKQIHHDLET----------------DDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLG 330 (443)
T ss_dssp TEEEEEEEEEEEEC-----------------------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHH
T ss_pred CCeEEEEEEEEEeecccCC----------------CCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHH
Confidence 9999999999875422110 012456899999999999999999999999999999999999999
Q ss_pred HHHHHhccCC----------------------CCccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHH
Q 005753 346 KCINSLAEGS----------------------AYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQ 403 (679)
Q Consensus 346 ~vI~aL~~~~----------------------~~VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~ 403 (679)
+||.+|+++. .|||||||||||||||+||||++|+|||||||+ +++||++||+||+
T Consensus 331 ~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~ 408 (443)
T 2owm_A 331 RVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYAD 408 (443)
T ss_dssp HHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHH
Confidence 9999998753 389999999999999999999999999999997 5999999999999
Q ss_pred Hhhccccccccccc
Q 005753 404 RAMKVENMLKLKEE 417 (679)
Q Consensus 404 rak~I~n~~~v~~~ 417 (679)
||++|+|.|.+|+.
T Consensus 409 rak~I~n~~~vN~~ 422 (443)
T 2owm_A 409 QAKRIRTRAVVNQV 422 (443)
T ss_dssp HHTTCEECCCCCCC
T ss_pred HHhhccccceeccc
Confidence 99999999999983
No 11
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=3.3e-88 Score=731.75 Aligned_cols=333 Identities=33% Similarity=0.552 Sum_probs=274.3
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC-CCCCcceeeccccCCC--------CChHHHHHHhhHH
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN-NWDAETYEFDEVLTEF--------ASQKRVYQAVAKP 133 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~F~FD~VF~~~--------asQ~~Vy~~~~~p 133 (679)
.++|+|+|||||++..|...+. .+++.+.+....+..+.. ....+.|+||+||++. ++|++||+.+++|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~p 80 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDS--KCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE 80 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTC--CBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHH
T ss_pred CCCcEEEEECCCCChhhccCCC--CeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHH
Confidence 3689999999999999976543 345555554333322221 2346789999999887 8999999999999
Q ss_pred HHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-----CCeEEEEEEEeecceeeecC
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-----TDSVTVSYLQLYMETIQDLL 208 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-----~~~V~vS~lEIYnE~v~DLL 208 (679)
+|+++++|||+||||||||||||||||+|.. ....+|||||++++||..+... .+.|+|||+|||||+|+|||
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~G~~--~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL 158 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL 158 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCS--GGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEeeCCC--ccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcc
Confidence 9999999999999999999999999998743 2456899999999999988653 35799999999999999999
Q ss_pred CCCC-CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccC
Q 005753 209 DPTN-DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHS 287 (679)
Q Consensus 209 ~~~~-~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~ 287 (679)
+|.. ..+.+++|+..| ++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.......
T Consensus 159 ~~~~~~~l~ire~~~~g-~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~--- 234 (366)
T 2zfi_A 159 NPKNKGNLRVREHPLLG-PYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET--- 234 (366)
T ss_dssp CTTTCSCBCEEEETTTE-EEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTT---
T ss_pred ccccCCCceEEEcCCCC-EEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCC---
Confidence 9864 579999998755 89999999999999999999999999999999999999999999999999876433210
Q ss_pred CCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccC------------C
Q 005753 288 GENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEG------------S 355 (679)
Q Consensus 288 ~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~------------~ 355 (679)
.......|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|+++ .
T Consensus 235 -------------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~ 301 (366)
T 2zfi_A 235 -------------NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301 (366)
T ss_dssp -------------TCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred -------------CccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccC
Confidence 002356799999999999999999999999999999999999999999999873 4
Q ss_pred CCccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccccccccc
Q 005753 356 AYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKE 416 (679)
Q Consensus 356 ~~VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~ 416 (679)
.|||||||||||||||+||||++|+||+||||+..+++||++||+||+||++|+|.|.++.
T Consensus 302 ~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp --CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999998764
No 12
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.5e-88 Score=726.05 Aligned_cols=331 Identities=34% Similarity=0.487 Sum_probs=280.7
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCc
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGY 142 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~ 142 (679)
.++|+|+|||||++..|...+. ..++.+.+....+... ...+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~i~~~---~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~ 77 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGE--TAQVYWKTDNNVIYQV---DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGY 77 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTT--CCCCCEEEETTEEEET---TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCChhhhccCC--CcEEEEeCCCCeEEEC---CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999865443 2233333322233221 1357899999999999999999999999999999999
Q ss_pred ceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC---CCeEEEEEEEeecceeeecCCCCC--Cccee
Q 005753 143 NGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD---TDSVTVSYLQLYMETIQDLLDPTN--DNISI 217 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~---~~~V~vS~lEIYnE~v~DLL~~~~--~~l~i 217 (679)
|+||||||||||||||||.|.. ..+|||||++++||..+... .+.|+|||+|||||+|+|||++.. .++.+
T Consensus 78 n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 153 (349)
T 1t5c_A 78 NGTIFAYGQTASGKTYTMMGSE----DHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLII 153 (349)
T ss_dssp CEEEEEEESTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEE
T ss_pred ccceeeecCCCCCCCeEEecCC----CCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceE
Confidence 9999999999999999997743 45899999999999998754 457999999999999999998753 57899
Q ss_pred eecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCcccc
Q 005753 218 AEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSHMV 297 (679)
Q Consensus 218 ~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~~~ 297 (679)
++|+.. .++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+........
T Consensus 154 ~ed~~~-~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~------------ 220 (349)
T 1t5c_A 154 REDVNR-NVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSN------------ 220 (349)
T ss_dssp EETTTT-EEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC----------------
T ss_pred EECCCC-CEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcC------------
Confidence 999874 5999999999999999999999999999999999999999999999999998765432100
Q ss_pred ccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC--CCccccCcccccccccccCC
Q 005753 298 KTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS--AYVPVRDSKLTRLLRDSFGG 375 (679)
Q Consensus 298 ~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~--~~VPyRdSKLTrLLqdsLgG 375 (679)
.......|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||
T Consensus 221 ---~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgG 297 (349)
T 1t5c_A 221 ---CEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGG 297 (349)
T ss_dssp ------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTS
T ss_pred ---cCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCC
Confidence 0124578999999999999999999999999999999999999999999999875 69999999999999999999
Q ss_pred CCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccccccccCH
Q 005753 376 TARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKEEFDY 420 (679)
Q Consensus 376 nskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~~~~~ 420 (679)
|++|+|||||||+ +++||++||+||+||++|+|.|.+|++.+.
T Consensus 298 nskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 298 NAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp SSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred CceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCC
Confidence 9999999999997 589999999999999999999999998764
No 13
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-87 Score=715.24 Aligned_cols=320 Identities=36% Similarity=0.548 Sum_probs=270.3
Q ss_pred CCCCeEEEEecCCCCchhhhccCCCCceEEeCCCce-EEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhc
Q 005753 62 VPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELK-RLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLD 140 (679)
Q Consensus 62 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~ 140 (679)
..++|+|+|||||++..|..... ...++.+++... .+.+.. ....+.|.||+||+++++|++||+.+ .|+|+++++
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~ 78 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPE-ATNAVTFDADDDSIIHLLH-KGKPVSFELDKVFSPQASQQDVFQEV-QALVTSCID 78 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGG-GSBCEEECSSCTTEEEEEE-TTEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHT
T ss_pred CCCCEEEEEEcCCCChhhcccCC-CccEEEEeCCCCcEEEEcC-CCCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhC
Confidence 46899999999999998854321 234666765433 333322 22457899999999999999999985 899999999
Q ss_pred CcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEEEEeecceeeecCCCCC-Ccc
Q 005753 141 GYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSYLQLYMETIQDLLDPTN-DNI 215 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~lEIYnE~v~DLL~~~~-~~l 215 (679)
|||+||||||||||||||||+|. +.++|||||++++||..+... .+.|+|||+|||||+|+|||++.. ..+
T Consensus 79 G~n~tifAYGqTGSGKTyTm~G~----~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l 154 (330)
T 2h58_A 79 GFNVCIFAYGQTGAGKTYTMEGT----AENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKL 154 (330)
T ss_dssp TCCEEEEEESSTTSSHHHHHTBC----SSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCC
T ss_pred CCEEEEEeECCCCCCCcEEEecC----CCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccc
Confidence 99999999999999999999774 345899999999999988653 358999999999999999998753 334
Q ss_pred e--eeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCC
Q 005753 216 S--IAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNN 293 (679)
Q Consensus 216 ~--i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~ 293 (679)
. +.+|+. |.++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 155 ~i~~~~~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------- 222 (330)
T 2h58_A 155 EIRLCPDGS-GQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST----------- 222 (330)
T ss_dssp CCEECTTSS-CCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT-----------
T ss_pred eEEEeecCC-CCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC-----------
Confidence 4 445655 56999999999999999999999999999999999999999999999999998754221
Q ss_pred ccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccccccccccc
Q 005753 294 SHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDSF 373 (679)
Q Consensus 294 s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsL 373 (679)
.....|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|++++.|||||||||||||||+|
T Consensus 223 ---------~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsL 293 (330)
T 2h58_A 223 ---------GLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSL 293 (330)
T ss_dssp ---------TEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHH
T ss_pred ---------CcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccc
Q 005753 374 GGTARTSLVITIGPSPRHRGETASTILFGQRAMKVE 409 (679)
Q Consensus 374 gGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~ 409 (679)
|||++|+||+||||+..+++||++||+||+||++|+
T Consensus 294 gGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 294 SGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred CCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999986
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3.3e-87 Score=719.27 Aligned_cols=325 Identities=38% Similarity=0.594 Sum_probs=264.1
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhcCc
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGY 142 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~ 142 (679)
.++|+|+|||||++..|...+. ..|+.+.|....+.+. ..+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 10 ~~~i~V~vRvRP~~~~E~~~~~--~~~~~~~~~~~~~~~~----~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~ 83 (344)
T 4a14_A 10 EAPVRVALRVRPLLPKELLHGH--QSCLQVEPGLGRVTLG----RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGF 83 (344)
T ss_dssp CCCCEEEEEECCCCHHHHHTTC--CBCEEEEGGGTEEEET----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred ccceEEEEEecccchHHHhccC--eeEEEEcCCCceEEec----ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhc
Confidence 5799999999999999976543 5788888877666653 357899999999999999999999999999999999
Q ss_pred ceEEEeeccCCCCccccccCCCCC--CCCCcchHHHHHHHHHhccccC---CCeEEEEEEEeecceeeecCCCC--CCcc
Q 005753 143 NGTVMAYGQTGTGKTYTLGPLGEE--DPATRGIMVRAMEDILAGVSLD---TDSVTVSYLQLYMETIQDLLDPT--NDNI 215 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm~G~g~~--~~~~~GIipra~~~LF~~i~~~---~~~V~vS~lEIYnE~v~DLL~~~--~~~l 215 (679)
|+||||||||||||||||+|.... ....+|||||++++||+.+... .+.|+|||+|||||+|+|||++. ...+
T Consensus 84 n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l 163 (344)
T 4a14_A 84 NATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDI 163 (344)
T ss_dssp CEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGGGC
T ss_pred CeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccccccc
Confidence 999999999999999999875322 2456899999999999988764 45799999999999999999864 4578
Q ss_pred eeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCCCcc
Q 005753 216 SIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGNNSH 295 (679)
Q Consensus 216 ~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~~s~ 295 (679)
.+++|+. |.++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.........
T Consensus 164 ~i~e~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~--------- 233 (344)
T 4a14_A 164 QLREDER-GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLP--------- 233 (344)
T ss_dssp EEEECTT-SCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC----------------
T ss_pred eeeeccC-CCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCC---------
Confidence 9999986 559999999999999999999999999999999999999999999999999987643211000
Q ss_pred ccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccC---CCCccccCcccccccccc
Q 005753 296 MVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEG---SAYVPVRDSKLTRLLRDS 372 (679)
Q Consensus 296 ~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~---~~~VPyRdSKLTrLLqds 372 (679)
.........|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+
T Consensus 234 ---~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqds 310 (344)
T 4a14_A 234 ---RPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDS 310 (344)
T ss_dssp --------CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTS
T ss_pred ---CccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhh
Confidence 00113467899999999999999999999999999999999999999999999874 369999999999999999
Q ss_pred cCCCCceeeeEecCCCCCChHHhHHHHHHHHHhh
Q 005753 373 FGGTARTSLVITIGPSPRHRGETASTILFGQRAM 406 (679)
Q Consensus 373 LgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak 406 (679)
||||++|+||+||||+..+++||++||+||+|||
T Consensus 311 LgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 311 LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 9999999999999999999999999999999996
No 15
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.9e-87 Score=719.98 Aligned_cols=324 Identities=35% Similarity=0.540 Sum_probs=249.0
Q ss_pred CCCCCCeEEEEecCCCCchhhhccCCCCceEEeC--------CCceEEEecc-----------CCCCCcceeeccccCCC
Q 005753 60 AGVPGRVRVAVRLRTRNAEEMVADADFGDCVELL--------PELKRLKLRK-----------NNWDAETYEFDEVLTEF 120 (679)
Q Consensus 60 ~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~--------~~~~~~~~~~-----------~~~~~~~F~FD~VF~~~ 120 (679)
.+..++|+|+|||||++..|...+. ..|+.+. |....+.... .....+.|.||+||+++
T Consensus 6 ~d~~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~ 83 (355)
T 3lre_A 6 EDLCHHMKVVVRVRPENTKEKAAGF--HKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDET 83 (355)
T ss_dssp ------CEEEEEECCCCHHHHHTTC--CBSEEECSSSEEEEC------------------------CCEEEECSEEECTT
T ss_pred hhccCCCEEEEEeCcCChHHHhcCC--ceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCC
Confidence 4457899999999999999976653 3444443 3222111100 01234589999999999
Q ss_pred CChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC----CCeEEEEE
Q 005753 121 ASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD----TDSVTVSY 196 (679)
Q Consensus 121 asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~----~~~V~vS~ 196 (679)
++|++||+.++.|+|+++++|||+||||||||||||||||+|.. ..+|||||++++||..+... .+.|+|||
T Consensus 84 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~ 159 (355)
T 3lre_A 84 STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA----DEPGVMYLTMLHLYKCMDEIKEEKICSTAVSY 159 (355)
T ss_dssp CCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCC----CCCCeeehhhhHHHHhhhhhccCceEEEEEEE
Confidence 99999999999999999999999999999999999999997743 45799999999999988653 34799999
Q ss_pred EEeecceeeecCCCCCCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEE
Q 005753 197 LQLYMETIQDLLDPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVK 276 (679)
Q Consensus 197 lEIYnE~v~DLL~~~~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 276 (679)
+|||||+|+|||++. .++.+++|+..| ++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.
T Consensus 160 ~EIYnE~i~DLL~~~-~~l~ire~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~ 237 (355)
T 3lre_A 160 LEVYNEQIRDLLVNS-GPLAVREDTQKG-VVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLR 237 (355)
T ss_dssp EEEETTEEEESSSCC-CCBEEEECTTSC-EEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEE
T ss_pred EEEECCEEEECcCCC-CCceeEEcCCCC-EEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEE
Confidence 999999999999875 579999998755 999999999999999999999999999999999999999999999999998
Q ss_pred EeecccccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC-
Q 005753 277 RSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS- 355 (679)
Q Consensus 277 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~- 355 (679)
+....... ...++.|+|+|||||||||..++++.|.|++|+.+||+||++||+||++|+++.
T Consensus 238 ~~~~~~~~-----------------~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 300 (355)
T 3lre_A 238 QQDKTASI-----------------NQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKR 300 (355)
T ss_dssp EEETTSCT-----------------TCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC----
T ss_pred EecCCCCC-----------------CCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 86432210 023457999999999999999999999999999999999999999999999854
Q ss_pred --CCccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 356 --AYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 356 --~~VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
.|||||||||||||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 301 ~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 301 KNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp ----CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred CCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 59999999999999999999999999999999999999999999999999986
No 16
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-86 Score=720.20 Aligned_cols=325 Identities=31% Similarity=0.464 Sum_probs=248.2
Q ss_pred CCCCCCeEEEEecCCCCchhhhccCCCCceEEeCC-------CceEEEecc------------CCCCCcceeeccccCCC
Q 005753 60 AGVPGRVRVAVRLRTRNAEEMVADADFGDCVELLP-------ELKRLKLRK------------NNWDAETYEFDEVLTEF 120 (679)
Q Consensus 60 ~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~-------~~~~~~~~~------------~~~~~~~F~FD~VF~~~ 120 (679)
....++|+|+|||||+++.|...+.. ++.+.+ ....+.+.. .....+.|+||+||+++
T Consensus 18 ~~~~~~irV~vRvRP~~~~E~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~ 94 (376)
T 2rep_A 18 GSLKGNIRVFCRVRPVLPGEPTPPPG---LLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPG 94 (376)
T ss_dssp -----CEEEEEEECCCCTTSCCCCGG---GSBCCC------CCCCEEECCC-----------------CEEECSEEECTT
T ss_pred hccCCCeEEEEEcCCCChhhcccCCc---eEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCc
Confidence 45678999999999999998654321 111111 112222211 11234689999999999
Q ss_pred CChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-----CCeEEEE
Q 005753 121 ASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-----TDSVTVS 195 (679)
Q Consensus 121 asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-----~~~V~vS 195 (679)
++|++||+.+ .|+|+++|+|||+||||||||||||||||+|....++..+|||||++++||..+... .+.|+||
T Consensus 95 ~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS 173 (376)
T 2rep_A 95 SGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVAS 173 (376)
T ss_dssp CCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEE
T ss_pred ccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence 9999999996 589999999999999999999999999998866556678999999999999987642 4589999
Q ss_pred EEEeecceeeecCCCC-----CCcceeeecC-CCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcce
Q 005753 196 YLQLYMETIQDLLDPT-----NDNISIAEDP-KTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHA 269 (679)
Q Consensus 196 ~lEIYnE~v~DLL~~~-----~~~l~i~ed~-~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~ 269 (679)
|+|||||+|+|||++. ...+.+++++ ..|.++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+
T Consensus 174 ~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~ 253 (376)
T 2rep_A 174 YVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHS 253 (376)
T ss_dssp EEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEE
T ss_pred EEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceE
Confidence 9999999999999875 2457888873 346699999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeecccccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCc----ccHHHHHHhhhhHHHHH
Q 005753 270 FLMVHVKRSVEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEG----HTLEEAKSINLSLSALG 345 (679)
Q Consensus 270 Ifti~v~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g----~rlkE~~~IN~SL~aLg 345 (679)
||+|+|.+..... .....|+|+|||||||||.+++++.| .|++|+.+||+||++||
T Consensus 254 Ifti~v~~~~~~~--------------------~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg 313 (376)
T 2rep_A 254 VFQLQISGEHSSR--------------------GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLG 313 (376)
T ss_dssp EEEEEEEEEESSS--------------------CCEEEEEEEEEECCCCC------------------------CHHHHH
T ss_pred EEEEEEEEEecCC--------------------CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHH
Confidence 9999998754321 23467999999999999999999999 99999999999999999
Q ss_pred HHHHHhccCCCCccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 346 KCINSLAEGSAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 346 ~vI~aL~~~~~~VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
+||.+|++++.|||||||||||||||+||||++|+|||||||+..+++||++||+||+|++++
T Consensus 314 ~vI~aL~~~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 314 LVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHHHHTTCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 17
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-87 Score=718.82 Aligned_cols=326 Identities=36% Similarity=0.498 Sum_probs=253.4
Q ss_pred CCCCCeEEEEecCCCCchhhhc--cCCCCceEEeCCC-ceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHH
Q 005753 61 GVPGRVRVAVRLRTRNAEEMVA--DADFGDCVELLPE-LKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVES 137 (679)
Q Consensus 61 ~~~~~VrV~vRvRP~~~~E~~~--~~~~~~~v~~~~~-~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~ 137 (679)
+..++|||+|||||++..|... ..+...++.+... ........+....+.|.||+||+ +++|++||+.+++|+|++
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~ 99 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQ 99 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHH
T ss_pred CCCCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHH
Confidence 3468999999999998665321 1111223332211 11111112223456899999997 589999999999999999
Q ss_pred HhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC---CCeEEEEEEEeecceeeecCCCC---
Q 005753 138 VLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD---TDSVTVSYLQLYMETIQDLLDPT--- 211 (679)
Q Consensus 138 ~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~---~~~V~vS~lEIYnE~v~DLL~~~--- 211 (679)
+|+|||+||||||||||||||||+|.. .++..+|||||++++||+.+... .+.|+|||+|||||+|+|||++.
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM~G~~-~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 178 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTMMGAT-ENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYV 178 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCS-SCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSSTTS
T ss_pred HhCCCCEEEEEeCCCCCCccEEeCCcc-CCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccccccc
Confidence 999999999999999999999998843 34567899999999999987654 45799999999999999999853
Q ss_pred ---CCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCC
Q 005753 212 ---NDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSG 288 (679)
Q Consensus 212 ---~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~ 288 (679)
...+.+++++. | +++.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+......
T Consensus 179 ~~~~~~~~~~~~~~-g-~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~----- 251 (359)
T 3nwn_A 179 GPSVTPMTIVENPQ-G-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS----- 251 (359)
T ss_dssp CTTTSCCEEEEETT-E-EEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC----------
T ss_pred ccccccceEEecCC-c-eEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccccc-----
Confidence 23467777764 5 8999999999999999999999999999999999999999999999999986532211
Q ss_pred CCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccC-CCCccccCccccc
Q 005753 289 ENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEG-SAYVPVRDSKLTR 367 (679)
Q Consensus 289 ~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~-~~~VPyRdSKLTr 367 (679)
......|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||
T Consensus 252 -------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~ 318 (359)
T 3nwn_A 252 -------------EEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTH 318 (359)
T ss_dssp ---------------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHH
T ss_pred -------------CcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHH
Confidence 12346799999999999999999999999999999999999999999999975 5799999999999
Q ss_pred ccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 368 LLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 368 LLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 319 lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 319 ALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp HTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999987
No 18
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=3.3e-86 Score=711.55 Aligned_cols=320 Identities=31% Similarity=0.460 Sum_probs=263.8
Q ss_pred CCCeEEEEecCCCCc-hhhhccCCCCceEEeCC-----CceEEEecc--CCCCCcceeeccccCCCCChHHHHHHhhHHH
Q 005753 63 PGRVRVAVRLRTRNA-EEMVADADFGDCVELLP-----ELKRLKLRK--NNWDAETYEFDEVLTEFASQKRVYQAVAKPV 134 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~-~E~~~~~~~~~~v~~~~-----~~~~~~~~~--~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~pl 134 (679)
.|+|+|+|||||+++ .|. ....++.+.. ....+.+.. +....+.|+||+||+++++|++||+.+ .|+
T Consensus 2 k~nIrV~vRvRP~~~~~e~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~l 76 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLEN----SDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQL 76 (347)
T ss_dssp -CEEEEEEEECCCCTTTCC----CTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHH
T ss_pred CCCeEEEEEeCCCCccccc----CCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHH
Confidence 589999999999987 441 1133444432 122333332 233457899999999999999999986 699
Q ss_pred HHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhcccc-----CCCeEEEEEEEeecceeeecCC
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSL-----DTDSVTVSYLQLYMETIQDLLD 209 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~-----~~~~V~vS~lEIYnE~v~DLL~ 209 (679)
|+++++|||+||||||||||||||||+|. .+|||||++++||..+.. ..+.|+|||+|||||+|+|||+
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~G~------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 150 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTMLNP------GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR 150 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHHST------TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC
T ss_pred HHHhcCCceeEEEEECCCCCCCcEeccCC------CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccC
Confidence 99999999999999999999999999763 259999999999998753 2458999999999999999998
Q ss_pred CCCC---------cceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeec
Q 005753 210 PTND---------NISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVE 280 (679)
Q Consensus 210 ~~~~---------~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~ 280 (679)
+... .+.+++++..|.++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+...
T Consensus 151 ~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 230 (347)
T 1f9v_A 151 SDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNA 230 (347)
T ss_dssp -------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC
T ss_pred CccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecC
Confidence 7643 4678888777779999999999999999999999999999999999999999999999999987532
Q ss_pred ccccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC---CC
Q 005753 281 GRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS---AY 357 (679)
Q Consensus 281 ~~~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~---~~ 357 (679)
.. .....|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|++++ .|
T Consensus 231 ~~--------------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~h 290 (347)
T 1f9v_A 231 KT--------------------GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRH 290 (347)
T ss_dssp ----------------------CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CC
T ss_pred CC--------------------CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCc
Confidence 11 23467999999999999999999999999999999999999999999999876 89
Q ss_pred ccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccc
Q 005753 358 VPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLK 413 (679)
Q Consensus 358 VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~ 413 (679)
||||||||||||||+||||++|+|||||||+..+++||++||+||+||++|+..++
T Consensus 291 iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 291 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp CCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred CccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999987653
No 19
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=5.1e-86 Score=710.96 Aligned_cols=319 Identities=31% Similarity=0.471 Sum_probs=256.4
Q ss_pred CCCCeEEEEecCCCCchhhhccCCCCceEEeC-----CCceEEEeccCC--CCCcceeeccccCCCCChHHHHHHhhHHH
Q 005753 62 VPGRVRVAVRLRTRNAEEMVADADFGDCVELL-----PELKRLKLRKNN--WDAETYEFDEVLTEFASQKRVYQAVAKPV 134 (679)
Q Consensus 62 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~-----~~~~~~~~~~~~--~~~~~F~FD~VF~~~asQ~~Vy~~~~~pl 134 (679)
.+|+|||+|||||++..|...+ .++.+. .....+.+.... ...+.|+||+||+++++|++||+.+ .|+
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~l 77 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDM----SHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQL 77 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCC----TTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHH
T ss_pred CCCCcEEEEEeCCCCccccccC----ceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHH
Confidence 4689999999999999885442 222221 112234443322 2356899999999999999999986 699
Q ss_pred HHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-----CCeEEEEEEEeecceeeecCC
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-----TDSVTVSYLQLYMETIQDLLD 209 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-----~~~V~vS~lEIYnE~v~DLL~ 209 (679)
|+++++|||+||||||||||||||||+|. .+|||||++++||..+... .+.|+|||+|||||+|+|||+
T Consensus 78 v~~~l~G~n~tifAYGqTGSGKTyTm~g~------~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 151 (349)
T 3t0q_A 78 VQSSLDGYNVCIFAYGQTGSGKTYTMLNA------GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLR 151 (349)
T ss_dssp HHGGGTTCEEEEEEECSTTSSHHHHHHST------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHHCCcceeEEEeCCCCCCCceEeCCC------CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccc
Confidence 99999999999999999999999999763 2499999999999977642 457999999999999999998
Q ss_pred CCC-----------CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEe
Q 005753 210 PTN-----------DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRS 278 (679)
Q Consensus 210 ~~~-----------~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~ 278 (679)
+.. ..+.+++++..|.++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~ 231 (349)
T 3t0q_A 152 DFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGR 231 (349)
T ss_dssp ---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEE
T ss_pred ccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEE
Confidence 743 457788888777799999999999999999999999999999999999999999999999999876
Q ss_pred ecccccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC---
Q 005753 279 VEGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS--- 355 (679)
Q Consensus 279 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~--- 355 (679)
.... .....|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|++++
T Consensus 232 ~~~~--------------------~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~ 291 (349)
T 3t0q_A 232 NLHT--------------------GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGK 291 (349)
T ss_dssp ETTT--------------------CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGG
T ss_pred ecCC--------------------CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCC
Confidence 4321 23467999999999999999999999999999999999999999999999865
Q ss_pred CCccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccc
Q 005753 356 AYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENM 411 (679)
Q Consensus 356 ~~VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~ 411 (679)
.|||||||||||||||+||||++|+|||||||+..+++||++||+||+|+++|+..
T Consensus 292 ~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~ 347 (349)
T 3t0q_A 292 RYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347 (349)
T ss_dssp SCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC----
T ss_pred CcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccC
Confidence 49999999999999999999999999999999999999999999999999999754
No 20
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=6.3e-86 Score=711.05 Aligned_cols=321 Identities=32% Similarity=0.540 Sum_probs=253.0
Q ss_pred CCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEec-------cCCCCCcceeecccc--------CCCCChHHHHH
Q 005753 64 GRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLR-------KNNWDAETYEFDEVL--------TEFASQKRVYQ 128 (679)
Q Consensus 64 ~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~F~FD~VF--------~~~asQ~~Vy~ 128 (679)
.+|+|+|||||++.+|...+. .+++.+++....+... ......+.|+||+|| ++.++|++||+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~ 78 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHT--KCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFK 78 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTC--CBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCC--ceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHH
Confidence 379999999999999976543 3445554432222111 112346789999999 45689999999
Q ss_pred HhhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-----CCeEEEEEEEeecce
Q 005753 129 AVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-----TDSVTVSYLQLYMET 203 (679)
Q Consensus 129 ~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-----~~~V~vS~lEIYnE~ 203 (679)
.++.|+|+++++|||+||||||||||||||||+|.+ ..+|||||++++||..+... .+.|+|||+|||||+
T Consensus 79 ~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~ 154 (354)
T 3gbj_A 79 CLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA----DQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEK 154 (354)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTE
T ss_pred HhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCC----CCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCe
Confidence 999999999999999999999999999999998743 35799999999999887532 357999999999999
Q ss_pred eeecCCCCC--CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecc
Q 005753 204 IQDLLDPTN--DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEG 281 (679)
Q Consensus 204 v~DLL~~~~--~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~ 281 (679)
|+|||+|.. ..+.+++++..| ++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+....
T Consensus 155 i~DLL~~~~~~~~l~i~e~~~~g-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 233 (354)
T 3gbj_A 155 VRDLLDPKGSRQTLKVREHSVLG-PYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYD 233 (354)
T ss_dssp EEETTC------CBCBC-------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEEC
T ss_pred eeEccCCCCCCcceEEEEcCCCC-EEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecc
Confidence 999999853 579999998765 89999999999999999999999999999999999999999999999999876432
Q ss_pred cccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhcc------CC
Q 005753 282 RDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAE------GS 355 (679)
Q Consensus 282 ~~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~------~~ 355 (679)
... .......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++ +.
T Consensus 234 ~~~----------------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~ 297 (354)
T 3gbj_A 234 VKS----------------GTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKN 297 (354)
T ss_dssp TTS----------------CEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred cCC----------------CCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCC
Confidence 110 00235679999999999999999999999999999999999999999999986 35
Q ss_pred CCccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhc
Q 005753 356 AYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMK 407 (679)
Q Consensus 356 ~~VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~ 407 (679)
.|||||||||||||||+|||||+|+||+||||+..+++||++||+||.||+.
T Consensus 298 ~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 298 KFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp CCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred CcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 7999999999999999999999999999999999999999999999999985
No 21
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.4e-85 Score=712.65 Aligned_cols=319 Identities=31% Similarity=0.455 Sum_probs=253.0
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEec--cCC------CCCcceeeccccCCCCChHHHHHHhhHHH
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLR--KNN------WDAETYEFDEVLTEFASQKRVYQAVAKPV 134 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~--~~~------~~~~~F~FD~VF~~~asQ~~Vy~~~~~pl 134 (679)
.++|+|+|||||++..|...+. .+++.+... ..+.+. ... ...+.|+||+||+++++|++||+.++.|+
T Consensus 50 ~~~I~V~vRvRP~~~~E~~~~~--~~~v~~~~~-~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~pl 126 (387)
T 2heh_A 50 EHRICVCVRKRPLNKQELAKKE--IDVISIPSK-CLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPL 126 (387)
T ss_dssp CCSEEEEEEECCCCHHHHHTTC--CBCEECCBS-SEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCeEEEEECCCCChHHhccCC--ceEEEECCC-CEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHH
Confidence 6899999999999999976543 345555333 222221 111 12468999999999999999999999999
Q ss_pred HHHHhcCcceEEEeeccCCCCccccccCCC--CCCCCCcchHHHHHHHHHhcccc-----CCCeEEEEEEEeecceeeec
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTLGPLG--EEDPATRGIMVRAMEDILAGVSL-----DTDSVTVSYLQLYMETIQDL 207 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm~G~g--~~~~~~~GIipra~~~LF~~i~~-----~~~~V~vS~lEIYnE~v~DL 207 (679)
|+++++|||+||||||||||||||||+|.. ......+|||||++++||..+.. ..+.|+|||+|||||+|+||
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DL 206 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDL 206 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEET
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEEC
Confidence 999999999999999999999999998742 22345689999999999998864 35689999999999999999
Q ss_pred CCCCCCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccC
Q 005753 208 LDPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHS 287 (679)
Q Consensus 208 L~~~~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~ 287 (679)
|++. ..+.+++|++.| ++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+..
T Consensus 207 L~~~-~~l~i~ed~~~~-v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-------- 276 (387)
T 2heh_A 207 LNKK-AKLRVLEDGKQQ-VQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG-------- 276 (387)
T ss_dssp TTTT-EECEEEECTTCC-EEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS--------
T ss_pred CCCC-ccceEEEcCCCC-EEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC--------
Confidence 9875 568999998755 999999999999999999999999999999999999999999999999997520
Q ss_pred CCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCC-CCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCcccc
Q 005753 288 GENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSG-SEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLT 366 (679)
Q Consensus 288 ~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~-~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLT 366 (679)
...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+++..||||||||||
T Consensus 277 -----------------~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLT 339 (387)
T 2heh_A 277 -----------------RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLT 339 (387)
T ss_dssp -----------------SEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHH
T ss_pred -----------------eeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHH
Confidence 146899999999999998876 56788999999999999999999999999999999999999
Q ss_pred cccccc-cCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccc
Q 005753 367 RLLRDS-FGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENM 411 (679)
Q Consensus 367 rLLqds-LgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~ 411 (679)
|||||+ |||||+|+|||||||+..+++||++||+||+||++|++.
T Consensus 340 rlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 340 QVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp HHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred HHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999 599999999999999999999999999999999999863
No 22
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=6.1e-86 Score=711.24 Aligned_cols=320 Identities=36% Similarity=0.517 Sum_probs=257.2
Q ss_pred CCCCCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccC----------CCCCcceeeccccCCCCChHHHHHH
Q 005753 60 AGVPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKN----------NWDAETYEFDEVLTEFASQKRVYQA 129 (679)
Q Consensus 60 ~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~~~F~FD~VF~~~asQ~~Vy~~ 129 (679)
.+.+|+|||+|||||+...+ ..++.++++...+.+... ....+.|+||+||+ +++|++||+.
T Consensus 19 ~~~~g~IrV~vRvRP~~~~~-------~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~ 90 (358)
T 2nr8_A 19 SGTRKKVHAFVRVKPTDDFA-------HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYET 90 (358)
T ss_dssp ----CCEEEEEEECCCSSCC-------TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHH
T ss_pred CCCCCCeEEEEEcCCCCCCc-------cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHH
Confidence 34578999999999987542 235566555555443221 22346799999995 7999999999
Q ss_pred hhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC---CCeEEEEEEEeecceeee
Q 005753 130 VAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD---TDSVTVSYLQLYMETIQD 206 (679)
Q Consensus 130 ~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~---~~~V~vS~lEIYnE~v~D 206 (679)
++.|+|+++++|||+||||||||||||||||+|.. ++...+|||||++++||+.+... .+.|+|||+|||||+|+|
T Consensus 91 ~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~-~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~D 169 (358)
T 2nr8_A 91 VAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGAT-ENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFD 169 (358)
T ss_dssp HTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCS-SCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCCCceEecccc-cccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeE
Confidence 99999999999999999999999999999998753 33456899999999999988754 458999999999999999
Q ss_pred cCCCC------CCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeec
Q 005753 207 LLDPT------NDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVE 280 (679)
Q Consensus 207 LL~~~------~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~ 280 (679)
||++. ..++.+++++ .| ++|+|++++.|.+.+|++.+|..|.++|++++|.||..|||||+||+|+|.+...
T Consensus 170 LL~~~~~~~~~~~~l~i~e~~-~g-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~ 247 (358)
T 2nr8_A 170 LLSTLPYVGPSVTPMTIVENP-QG-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSR 247 (358)
T ss_dssp TTSSSTTSCTTTSCCEEEEET-TE-EEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC--
T ss_pred CcCCccccCccCCceEEEECC-Cc-eEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEec
Confidence 99863 3568999998 45 8999999999999999999999999999999999999999999999999987532
Q ss_pred ccccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCC-CCcc
Q 005753 281 GRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGS-AYVP 359 (679)
Q Consensus 281 ~~~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~-~~VP 359 (679)
... ......|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|+++. .|||
T Consensus 248 ~~~------------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiP 309 (358)
T 2nr8_A 248 TLS------------------EEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIP 309 (358)
T ss_dssp -----------------------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CC
T ss_pred cCC------------------CCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 110 023457999999999999999999999999999999999999999999999854 6999
Q ss_pred ccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcc
Q 005753 360 VRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKV 408 (679)
Q Consensus 360 yRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I 408 (679)
||||||||||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 310 yRdSkLT~LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 310 FRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp GGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CccCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999986
No 23
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=2.1e-85 Score=707.54 Aligned_cols=324 Identities=27% Similarity=0.395 Sum_probs=268.1
Q ss_pred CeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCC--------CCCcceeeccccCCCCChHHHHHHhhHHHHH
Q 005753 65 RVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNN--------WDAETYEFDEVLTEFASQKRVYQAVAKPVVE 136 (679)
Q Consensus 65 ~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~--------~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~ 136 (679)
+|||+|||||++..|...+. .+|+.+.+. ..+.+.... ...+.|.||+||+++++|++||+.+++|+|+
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~--~~~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~ 77 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKD--SDIITVKNN-CTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLII 77 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTC--CBCEEEEET-TEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred CeEEEEECCCCChHHhccCC--ceEEEECCC-CEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhh
Confidence 59999999999999976543 355655432 222221110 1246899999999999999999999999999
Q ss_pred HHhc-CcceEEEeeccCCCCccccccCCC-CCCCCCcchHHHHHHHHHhcccc----CCCeEEEEEEEeecceeeecCCC
Q 005753 137 SVLD-GYNGTVMAYGQTGTGKTYTLGPLG-EEDPATRGIMVRAMEDILAGVSL----DTDSVTVSYLQLYMETIQDLLDP 210 (679)
Q Consensus 137 ~~l~-G~N~tIfaYGqTgSGKTyTm~G~g-~~~~~~~GIipra~~~LF~~i~~----~~~~V~vS~lEIYnE~v~DLL~~ 210 (679)
++++ ||||||||||||||||||||.|.. .+....+|||||++++||..+.. ..+.|+|||+|||||+|+|||++
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 157 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK 157 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccC
Confidence 9995 999999999999999999998753 23356789999999999998753 34579999999999999999987
Q ss_pred CCCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCC
Q 005753 211 TNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGEN 290 (679)
Q Consensus 211 ~~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~ 290 (679)
.. .+.+++++..| ++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+..
T Consensus 158 ~~-~~~~~e~~~~~-~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~----------- 224 (360)
T 1ry6_A 158 RK-MVAALENGKKE-VVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN----------- 224 (360)
T ss_dssp ------------CC-BCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT-----------
T ss_pred Cc-cceeeEcCCCC-EEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc-----------
Confidence 54 46778887644 899999999999999999999999999999999999999999999999997531
Q ss_pred CCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCc-ccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCccccccc
Q 005753 291 GNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEG-HTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLL 369 (679)
Q Consensus 291 ~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g-~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLL 369 (679)
.....|+|+|||||||||..++++.| .+++|+.+||+||++||+||.+|+++..|||||||||||||
T Consensus 225 ------------~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lL 292 (360)
T 1ry6_A 225 ------------KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVL 292 (360)
T ss_dssp ------------TTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHT
T ss_pred ------------CCcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHH
Confidence 12357999999999999999999877 46899999999999999999999999999999999999999
Q ss_pred ccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccccccccc
Q 005753 370 RDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKE 416 (679)
Q Consensus 370 qdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~ 416 (679)
||+|||||+|+||+||||+..+++||++||+||+||++|+|.+..+.
T Consensus 293 qdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 293 RDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp GGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---------
T ss_pred HHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 99999999999999999999999999999999999999999665543
No 24
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=2.6e-85 Score=714.77 Aligned_cols=320 Identities=30% Similarity=0.450 Sum_probs=256.5
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEec--cCCC------CCcceeeccccCCCCChHHHHHHhhHHH
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLR--KNNW------DAETYEFDEVLTEFASQKRVYQAVAKPV 134 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~--~~~~------~~~~F~FD~VF~~~asQ~~Vy~~~~~pl 134 (679)
.++|+|+|||||++..|...+. .+|+.+.... .+.+. .... ..+.|+||+||+++++|++||+.++.|+
T Consensus 70 ~~~I~V~vRvRPl~~~E~~~~~--~~~v~~~~~~-~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~pl 146 (410)
T 1v8k_A 70 EHRICVCVRKRPLNKQELAKKE--IDVISVPSKC-LLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPL 146 (410)
T ss_dssp CCCEEEEEEECCCCHHHHHTTC--CBCEECCSSS-EEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCeEEEEEeCCCChhHhhcCC--ccEEEECCCC-EEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHH
Confidence 5899999999999999976543 3556554332 22221 1111 2468999999999999999999999999
Q ss_pred HHHHhcCcceEEEeeccCCCCccccccCCC--CCCCCCcchHHHHHHHHHhcccc-----CCCeEEEEEEEeecceeeec
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTLGPLG--EEDPATRGIMVRAMEDILAGVSL-----DTDSVTVSYLQLYMETIQDL 207 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm~G~g--~~~~~~~GIipra~~~LF~~i~~-----~~~~V~vS~lEIYnE~v~DL 207 (679)
|+++++|||+||||||||||||||||+|.. ......+|||||++++||..+.. ..+.|+|||+|||||+|+||
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DL 226 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDL 226 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEET
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEEC
Confidence 999999999999999999999999998742 23345789999999999998864 24689999999999999999
Q ss_pred CCCCCCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccC
Q 005753 208 LDPTNDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHS 287 (679)
Q Consensus 208 L~~~~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~ 287 (679)
|++. ..+.+++|+..| ++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+..
T Consensus 227 L~~~-~~l~i~ed~~~~-v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-------- 296 (410)
T 1v8k_A 227 LNKK-AKLRVLEDSRQQ-VQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG-------- 296 (410)
T ss_dssp TTTT-EEEEEEECSSCC-EEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS--------
T ss_pred CCCC-CCceEEECCCCC-eEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC--------
Confidence 9874 568999998754 999999999999999999999999999999999999999999999999997520
Q ss_pred CCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCC-CCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCcccc
Q 005753 288 GENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSG-SEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLT 366 (679)
Q Consensus 288 ~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~-~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLT 366 (679)
...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+.+..||||||||||
T Consensus 297 -----------------~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLT 359 (410)
T 1v8k_A 297 -----------------RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLT 359 (410)
T ss_dssp -----------------SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHH
T ss_pred -----------------cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhH
Confidence 146899999999999998876 56788899999999999999999999999999999999999
Q ss_pred cccccc-cCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccccc
Q 005753 367 RLLRDS-FGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENML 412 (679)
Q Consensus 367 rLLqds-LgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~ 412 (679)
|||||| |||||+|+|||||||+..+++||++||+||+||++|...|
T Consensus 360 rLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 360 QVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp HHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred HHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 999999 6999999999999999999999999999999999998655
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-84 Score=711.66 Aligned_cols=322 Identities=31% Similarity=0.474 Sum_probs=267.7
Q ss_pred CCCCeEEEEecCCCCchhhhccCCCCceEEeCC---C--ceEEEec--cCCCCCcceeeccccCCCCChHHHHHHhhHHH
Q 005753 62 VPGRVRVAVRLRTRNAEEMVADADFGDCVELLP---E--LKRLKLR--KNNWDAETYEFDEVLTEFASQKRVYQAVAKPV 134 (679)
Q Consensus 62 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~---~--~~~~~~~--~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~pl 134 (679)
..|+|||+|||||++..+-..+ ..++.+.. . ...+.+. .+....+.|.||+||+++++|++||+.+ .|+
T Consensus 57 lkgnIrV~vRvRP~~~~~e~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~l 132 (403)
T 4etp_A 57 LRGNIRVYLRIRPALKNLENSD---TSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQL 132 (403)
T ss_dssp HHCSEEEEEEECCCCTTTSCSC---CTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHH-HHH
T ss_pred cCCCeEEEEEeCCCCCcccccC---CCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHH-HHH
Confidence 4589999999999987631111 23333321 1 1222222 2223357899999999999999999986 589
Q ss_pred HHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhcccc-----CCCeEEEEEEEeecceeeecCC
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSL-----DTDSVTVSYLQLYMETIQDLLD 209 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~-----~~~~V~vS~lEIYnE~v~DLL~ 209 (679)
|+++++|||+||||||||||||||||+|. .+|||||++++||..+.. ..+.|+|||+|||||+|+|||+
T Consensus 133 v~~~l~G~N~tifAYGqTGSGKTyTM~g~------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 206 (403)
T 4etp_A 133 VQSSLDGYNVAIFAYGQTGSGKTFTMLNP------GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLR 206 (403)
T ss_dssp HHHHHTTCCEEEEEESCTTSSHHHHHHCT------TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHhCCcceEEEEECCCCCCCceEeCCC------CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccC
Confidence 99999999999999999999999999763 259999999999998764 2458999999999999999998
Q ss_pred CCC---------CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeec
Q 005753 210 PTN---------DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVE 280 (679)
Q Consensus 210 ~~~---------~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~ 280 (679)
+.. ..+.+++++..|.++|.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+...
T Consensus 207 ~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 286 (403)
T 4etp_A 207 SDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNA 286 (403)
T ss_dssp C--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEET
T ss_pred CccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeec
Confidence 753 35678888877889999999999999999999999999999999999999999999999999987643
Q ss_pred ccccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCC---C
Q 005753 281 GRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSA---Y 357 (679)
Q Consensus 281 ~~~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~---~ 357 (679)
.. .....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++.. |
T Consensus 287 ~~--------------------~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~h 346 (403)
T 4etp_A 287 KT--------------------GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRH 346 (403)
T ss_dssp TT--------------------CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSC
T ss_pred CC--------------------CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Confidence 21 234679999999999999999999999999999999999999999999998654 9
Q ss_pred ccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccc
Q 005753 358 VPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLK 413 (679)
Q Consensus 358 VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~ 413 (679)
||||||||||||||+|||||+|+||+||||+..+++||++||+||+|+++|+..++
T Consensus 347 iPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 347 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp CCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred CCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999987653
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.7e-84 Score=693.93 Aligned_cols=307 Identities=33% Similarity=0.491 Sum_probs=243.5
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCC--CceEEEeccCCCCCcceeeccccCCCCChHHHHHHhhHHHHHHHhc
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLP--ELKRLKLRKNNWDAETYEFDEVLTEFASQKRVYQAVAKPVVESVLD 140 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~ 140 (679)
.++|||+|||||++..|.. ....++.+.+ ....+.+ +.+.|+||+||+++++|++||+.++.|+|+++++
T Consensus 21 ~~~VrV~vRvRP~~~~e~~---~~~~~v~~~~~~~~~~~~~-----~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~ 92 (344)
T 3dc4_A 21 LSAVRIAVREAPYRQFLGR---REPSVVQFPPWSDGKSLIV-----DQNEFHFDHAFPATISQDEMYQALILPLVDKLLE 92 (344)
T ss_dssp CSEEEEEEEECCCC----------CCSEECCSSSCSSEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCccccc---CCceEEEecCCCCCceEEe-----cCcEEEcceEECCCCCHHHHHHhhccchhhHhhC
Confidence 5799999999999987622 2245666554 2233332 3579999999999999999999999999999999
Q ss_pred CcceEEEeeccCCCCccccccCCCC--CCCCCcchHHHHHHHHHhccccC------CCeEEEEEEEeecceeeecCCCCC
Q 005753 141 GYNGTVMAYGQTGTGKTYTLGPLGE--EDPATRGIMVRAMEDILAGVSLD------TDSVTVSYLQLYMETIQDLLDPTN 212 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm~G~g~--~~~~~~GIipra~~~LF~~i~~~------~~~V~vS~lEIYnE~v~DLL~~~~ 212 (679)
|||+||||||||||||||||+|... ..+..+|||||++++||+.+... .+.|+|||+|||||+|+|||++..
T Consensus 93 G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 172 (344)
T 3dc4_A 93 GFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP 172 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCT
T ss_pred CCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCC
Confidence 9999999999999999999977543 23567899999999999987532 357999999999999999998765
Q ss_pred CcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCCCC
Q 005753 213 DNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGENGN 292 (679)
Q Consensus 213 ~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~~ 292 (679)
....+ + ..+.|++++.|.|.+|++.+|..|.++|++++|.||..|||||+||+|+|.+.
T Consensus 173 ~~~~~------~-~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------------- 231 (344)
T 3dc4_A 173 HMPMV------A-ARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK-------------- 231 (344)
T ss_dssp TSBCC------S-STTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS--------------
T ss_pred CCccc------c-ccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec--------------
Confidence 42211 1 34578999999999999999999999999999999999999999999999641
Q ss_pred CccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCcccccccccc
Q 005753 293 NSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLRDS 372 (679)
Q Consensus 293 ~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqds 372 (679)
...|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|++++.|||||||||||||||+
T Consensus 232 ------------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqds 299 (344)
T 3dc4_A 232 ------------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQAS 299 (344)
T ss_dssp ------------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTT
T ss_pred ------------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHH
Confidence 13589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccc
Q 005753 373 FGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVEN 410 (679)
Q Consensus 373 LgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n 410 (679)
||||++|+||+||||+..+++||++||+||+||+....
T Consensus 300 LgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~ 337 (344)
T 3dc4_A 300 LTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337 (344)
T ss_dssp SSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred hCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999998754
No 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=3.9e-83 Score=700.44 Aligned_cols=316 Identities=28% Similarity=0.447 Sum_probs=259.6
Q ss_pred CCCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCC------CCCcceeeccccCCCCChHHHHHHhhHHHH
Q 005753 62 VPGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNN------WDAETYEFDEVLTEFASQKRVYQAVAKPVV 135 (679)
Q Consensus 62 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~F~FD~VF~~~asQ~~Vy~~~~~plV 135 (679)
..|+|+|+|||||++..|... ..|+...++...+.+.... ...+.|+||+||+++++|++||+. +.|+|
T Consensus 57 l~gnIrV~vRvRP~~~~E~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv 131 (412)
T 3u06_A 57 LRDNIRVFCRIRPPLESEENR----MCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLI 131 (412)
T ss_dssp HTCSEEEEEEECCCCGGGTTS----CBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHH
T ss_pred hCCCEEEEEEcCCCCchhccC----cceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHH
Confidence 468999999999999888533 2343333333333332211 225789999999999999999986 56999
Q ss_pred HHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhcccc-----CCCeEEEEEEEeecceeeecCCC
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSL-----DTDSVTVSYLQLYMETIQDLLDP 210 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~-----~~~~V~vS~lEIYnE~v~DLL~~ 210 (679)
+++++|||+||||||||||||||||+|. +..+|||||++++||..+.. ..+.|+|||+|||||.|+|||++
T Consensus 132 ~~~l~G~n~tifAYGqTGSGKTyTM~G~----~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 207 (412)
T 3u06_A 132 QSALDGYNICIFAYGQTGSGKTYTMDGV----PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN 207 (412)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHTEE----TTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCC
T ss_pred HHHHCCCceEEEEecCCCCCCeeEecCC----CCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCC
Confidence 9999999999999999999999999774 34589999999999998863 24579999999999999999998
Q ss_pred CCCcceee--ecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCC
Q 005753 211 TNDNISIA--EDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSG 288 (679)
Q Consensus 211 ~~~~l~i~--ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~ 288 (679)
...++.++ +++. |.++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 208 ~~~~~~i~~~~~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~------ 280 (412)
T 3u06_A 208 EQKDMEIRMAKNNK-NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK------ 280 (412)
T ss_dssp SCCCCCEEECSSCT-TSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT------
T ss_pred CCCCceeeeeecCC-CCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC------
Confidence 77665554 5554 55999999999999999999999999999999999999999999999999998754321
Q ss_pred CCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCcccccc
Q 005753 289 ENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRL 368 (679)
Q Consensus 289 ~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrL 368 (679)
.....|+|+|||||||||.+ .|.|++|+.+||+||++||+||.+|++++.||||||||||||
T Consensus 281 --------------~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~L 342 (412)
T 3u06_A 281 --------------QEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHL 342 (412)
T ss_dssp --------------TEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHH
T ss_pred --------------CCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHH
Confidence 34567999999999999974 468999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccc
Q 005753 369 LRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENM 411 (679)
Q Consensus 369 LqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~ 411 (679)
|||+|||||+|+||+||||+..+++||++||+||+|+++|+..
T Consensus 343 LqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~ 385 (412)
T 3u06_A 343 LMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 385 (412)
T ss_dssp HGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999843
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=7.8e-78 Score=704.52 Aligned_cols=320 Identities=31% Similarity=0.505 Sum_probs=249.3
Q ss_pred CCCCCeEEEEecC----CCCchhhhccCCCCceEEeCCC------ceEEEec---cCCCCCcceeeccccCCCCChHHHH
Q 005753 61 GVPGRVRVAVRLR----TRNAEEMVADADFGDCVELLPE------LKRLKLR---KNNWDAETYEFDEVLTEFASQKRVY 127 (679)
Q Consensus 61 ~~~~~VrV~vRvR----P~~~~E~~~~~~~~~~v~~~~~------~~~~~~~---~~~~~~~~F~FD~VF~~~asQ~~Vy 127 (679)
..-+++||||||| |....|...+.. ..+.-.|. ...+.+. .+....++|+||+||+++++|++||
T Consensus 371 ~il~~~rV~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~ 448 (715)
T 4h1g_A 371 ALKGNIRVFCRIRNVSSSSSSSSSSSSED--IIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVF 448 (715)
T ss_dssp SSSCSEEEEEEECCCC---------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHG
T ss_pred HHHhcCeEEEEEecccccccccccccccc--ceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHH
Confidence 4567999999999 544444333221 11111121 1222222 2234567999999999999999999
Q ss_pred HHhhHHHHHHHhcCcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhccccC-----CCeEEEEEEEeecc
Q 005753 128 QAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSLD-----TDSVTVSYLQLYME 202 (679)
Q Consensus 128 ~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~~-----~~~V~vS~lEIYnE 202 (679)
+.+ .|+|+++++|||+||||||||||||||||.|. .+|||||++++||+.+... .+.|+|||+|||||
T Consensus 449 ~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~------~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne 521 (715)
T 4h1g_A 449 EEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP------TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNE 521 (715)
T ss_dssp GGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETT
T ss_pred HHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCC------CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECC
Confidence 976 59999999999999999999999999999752 3699999999999988642 34799999999999
Q ss_pred eeeecCCCC---CCcceeeecCCCCCeecCCcEEEEecChhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEee
Q 005753 203 TIQDLLDPT---NDNISIAEDPKTGDVSLPGVTLVEIRDQHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSV 279 (679)
Q Consensus 203 ~v~DLL~~~---~~~l~i~ed~~~G~v~v~glt~~~V~s~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~ 279 (679)
+|+|||+|. ...+.+++++..|.++|.||+++.|.|.+|++.+|..|.++|++++|.+|..|||||+||+|+|.+..
T Consensus 522 ~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~ 601 (715)
T 4h1g_A 522 AIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYN 601 (715)
T ss_dssp EEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEE
T ss_pred EEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEe
Confidence 999999875 34577888888888999999999999999999999999999999999999999999999999998764
Q ss_pred cccccccCCCCCCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccC-CCCc
Q 005753 280 EGRDVAHSGENGNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEG-SAYV 358 (679)
Q Consensus 280 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~-~~~V 358 (679)
... .....|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|+.+ +.||
T Consensus 602 ~~~--------------------~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~v 661 (715)
T 4h1g_A 602 SLT--------------------KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHV 661 (715)
T ss_dssp TTT--------------------CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred cCC--------------------CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcC
Confidence 321 2356799999999999999999999999999999999999999999999854 5899
Q ss_pred cccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccc
Q 005753 359 PVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVE 409 (679)
Q Consensus 359 PyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~ 409 (679)
|||||||||||||||||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 662 pyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 662 PYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp CGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred CCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.97 E-value=7.4e-32 Score=238.35 Aligned_cols=98 Identities=45% Similarity=0.668 Sum_probs=92.9
Q ss_pred HHHhhhhHHHHHHHHHHhccC-CCCccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccccc
Q 005753 334 AKSINLSLSALGKCINSLAEG-SAYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENML 412 (679)
Q Consensus 334 ~~~IN~SL~aLg~vI~aL~~~-~~~VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~ 412 (679)
|.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+||+||||+..+++||++||+||+||+.|+|.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 357999999999999999987 5899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHH
Q 005753 413 KLKEEFDYKSLARRLDIQL 431 (679)
Q Consensus 413 ~v~~~~~~~~l~~~l~~e~ 431 (679)
.+|++.+...+.++++.|+
T Consensus 81 ~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 81 SVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CCEEECCHHHHHHHHHHHH
T ss_pred eeccCCCHHHHHHHHHHhh
Confidence 9999999988888887665
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=1.6e-29 Score=230.44 Aligned_cols=97 Identities=44% Similarity=0.676 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHHHhccCC-CCccccCcccccccccccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhcccccccccc
Q 005753 338 NLSLSALGKCINSLAEGS-AYVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLKLKE 416 (679)
Q Consensus 338 N~SL~aLg~vI~aL~~~~-~~VPyRdSKLTrLLqdsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~v~~ 416 (679)
|+||++||+||.+|+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|+|.|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999875 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 005753 417 EFDYKSLARRLDIQLDKL 434 (679)
Q Consensus 417 ~~~~~~l~~~l~~e~~~L 434 (679)
+.+...+.++++.+++++
T Consensus 81 ~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999888877776665544
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.2e-25 Score=225.39 Aligned_cols=262 Identities=15% Similarity=0.146 Sum_probs=168.8
Q ss_pred CCCCeEEEEecCCCC-chhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCCChH--HHHHHhhHHHHHHH
Q 005753 62 VPGRVRVAVRLRTRN-AEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFASQK--RVYQAVAKPVVESV 138 (679)
Q Consensus 62 ~~~~VrV~vRvRP~~-~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~asQ~--~Vy~~~~~plV~~~ 138 (679)
..|+|||++||||.. +. .|....|... +.+ +. +.+.|.||+||++.++|+ +||+++ .++|+++
T Consensus 22 LKGnIRVFcrvrp~~~p~---------~~~v~y~~~~-I~v-~~--~~k~f~FDRVf~p~s~Qe~~~vf~E~-~~~i~sc 87 (298)
T 2o0a_A 22 QKGTMRCYAYVMEQNLPE---------NLLFDYENGV-ITQ-GL--SEHVYKFNRVIPHLKVSEDKFFTQEY-SVYHDMC 87 (298)
T ss_dssp HHTCCEEEEEECGGGSCT---------TEEEETTTTE-EEE-TT--TCCEEECSEEEETTTSCHHHHHHHTT-HHHHHHH
T ss_pred hhCceEEEEEeccccCCc---------cceeecCccc-eee-cC--CCceEEeeeEECccccccHHHHHHHH-HHHHHHH
Confidence 458999999999965 31 2322122221 333 22 347999999999999999 999995 8999999
Q ss_pred hc-CcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhcccc---CCCeEEEEEEEee-cceeeecCCC--C
Q 005753 139 LD-GYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAGVSL---DTDSVTVSYLQLY-METIQDLLDP--T 211 (679)
Q Consensus 139 l~-G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~i~~---~~~~V~vS~lEIY-nE~v~DLL~~--~ 211 (679)
++ |||+||||||||||||| ||++..+|..... ..+.+++||+||| ||.++|||.. .
T Consensus 88 Ld~GyNvcIfSyGQTGsGKT-----------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL~~~~~ 150 (298)
T 2o0a_A 88 LNQKKNFNLISLSTTPHGSL-----------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSH 150 (298)
T ss_dssp HHTTCCEEEEEECSSCCHHH-----------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETTSCCC-
T ss_pred HhCCCceEEEEECCCCCCcc-----------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhcCCCCC
Confidence 99 99999999999999999 9999999998865 6778999999999 9999999963 2
Q ss_pred CCcceeeecCCCCCeecCCcEEEEecC-hhHHHHHHHhhhhhcccccccccccccCcceEEEEEEEEeecccccccCCCC
Q 005753 212 NDNISIAEDPKTGDVSLPGVTLVEIRD-QHSFVELLKLGEAHRFAANTKLNTESSRSHAFLMVHVKRSVEGRDVAHSGEN 290 (679)
Q Consensus 212 ~~~l~i~ed~~~G~v~v~glt~~~V~s-~ee~~~lL~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~ 290 (679)
.....|+.+.+ |..++.|++.+.|.+ ++|+..++..+..- .+|. +.-.|+.+.+.......+ ++
T Consensus 151 ~~k~eIk~~~~-g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~-----~~ 215 (298)
T 2o0a_A 151 NDKDSIKLKFE-KHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKSD-----GN 215 (298)
T ss_dssp -----CEEEEC-SSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC----------
T ss_pred CCcceEEecCC-CCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCccccc-----cc
Confidence 33456666644 667899999999999 99998887433322 1221 224455555543211100 00
Q ss_pred CCCccccccCCCCeEEeeeEEEEecCCCccccCCCCCcccHHHHHHhhhhHHHHHHHHHHhccCCCCccccCcccccccc
Q 005753 291 GNNSHMVKTLKPPIVRKAKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINSLAEGSAYVPVRDSKLTRLLR 370 (679)
Q Consensus 291 ~~~s~~~~~~~~~~~~~skL~fVDLAGSER~~~t~~~g~rlkE~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLq 370 (679)
.. + ..--+.|+.+.-.. +...|.+.+.. + -+-.|+++-+|+
T Consensus 216 ~~-~-----------~~~d~yf~e~~~~~--------------------~~~~l~~~~~~---~----~~~~spi~~il~ 256 (298)
T 2o0a_A 216 ND-P-----------VPVDFYFIELNNLK--------------------SIEQFDKSIFK---K----ESCETPIALVLK 256 (298)
T ss_dssp ---C-----------CCEEEEEEEECSHH--------------------HHHHHHHHHHT---C-----CCCSHHHHHHH
T ss_pred CC-C-----------CceEEEEEEeCCHH--------------------HHHHHHhhccc---c----cccCCcHHHHHH
Confidence 00 0 01236677665321 12223332221 1 344577777777
Q ss_pred cccCCCCceeeeEecCCCCCChHHhHHHHHHHHHhhccccccc
Q 005753 371 DSFGGTARTSLVITIGPSPRHRGETASTILFGQRAMKVENMLK 413 (679)
Q Consensus 371 dsLgGnskt~mI~tIsP~~~~~~ETlsTL~fa~rak~I~n~~~ 413 (679)
..|. ..+.++++++.-+. +--.-|..+++..++.|..+
T Consensus 257 ~ll~-~tks~~~~~l~~~~----~~~~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 257 KLIS-DTKSFFLLNLNDSK----NVNKLLTISEEVQTQLCKRK 294 (298)
T ss_dssp HHHH-HSBCEEEEEECCGG----GHHHHHHHHHHHHHHTC---
T ss_pred HHHh-cCcceEEEEecCCC----chhHHHHHHHHhhcccCccc
Confidence 6553 46788999997543 33347888888888876433
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.91 E-value=0.023 Score=64.26 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 533 EVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.+++..++.+++.+..+.+++.++.+.++.+++++..+.++.++++.++..++....+.++...+.+++.++.
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555555555555555555555555555555555443
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.81 E-value=0.11 Score=69.45 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=12.9
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
-|+-+|+||||||-++
T Consensus 1306 pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp CCEEESSTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578899999999554
No 34
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.66 E-value=0.2 Score=66.97 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
..|+++..|++++++...+.+.++++++..++.|+++..-...+..|..+=+++..
T Consensus 2039 ~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2039 ALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444433
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.50 E-value=0.36 Score=46.90 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFE 607 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~ 607 (679)
.|.+|++.-..-......+...+.+++.++.+.-.....+..++. ++..+..++.+|+.++..+.++
T Consensus 110 ~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~-----------EKe~l~~~~QRLkdE~rDLk~E 176 (189)
T 2v71_A 110 YVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD-----------EKESLLVSVQRLKDEARDLRQE 176 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHCCC-------------
T ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444333332333333344455555555554444444444443 3444444444554444444333
No 36
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.41 E-value=0.01 Score=73.21 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=19.2
Q ss_pred cCcceEEEeeccCCCCcccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyT 159 (679)
++.|-||+..|.+|||||.+
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~ 185 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTEN 185 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHH
T ss_pred cCCCcEEEEecCCCCCccHH
Confidence 79999999999999999987
No 37
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.16 E-value=0.51 Score=44.88 Aligned_cols=46 Identities=7% Similarity=0.063 Sum_probs=20.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGN 570 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~ 570 (679)
.++..++..|+..+...+.+....+.+.+.|.+++..++++...+.
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444444444444444444444444444444444333
No 38
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.15 E-value=0.045 Score=66.67 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=19.2
Q ss_pred cCcceEEEeeccCCCCcccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyT 159 (679)
++.|-||+..|.+|||||.+
T Consensus 153 ~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCccch
Confidence 79999999999999999987
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.08 E-value=0.022 Score=70.20 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHhccccC------CCeEEEEEEEeecceeee
Q 005753 171 RGIMVRAMEDILAGVSLD------TDSVTVSYLQLYMETIQD 206 (679)
Q Consensus 171 ~GIipra~~~LF~~i~~~------~~~V~vS~lEIYnE~v~D 206 (679)
.+|.-|.+.||...|+.. .....+..+.||.=.+++
T Consensus 431 k~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~ 472 (1184)
T 1i84_S 431 KAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE 472 (1184)
T ss_dssp HHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCC
Confidence 477778888888777542 234677778877544443
No 40
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.97 E-value=0.37 Score=43.98 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=64.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
...+..+...|...|+.++......|..+..|..+-.++...+....+.+.............++++++++..|++++..
T Consensus 43 ~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 43 MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566677777888877777788888888888888888888888888888888888888899999999999998875
Q ss_pred h
Q 005753 604 I 604 (679)
Q Consensus 604 ~ 604 (679)
+
T Consensus 123 ~ 123 (129)
T 2fxo_A 123 L 123 (129)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.50 E-value=0.35 Score=45.40 Aligned_cols=76 Identities=25% Similarity=0.268 Sum_probs=62.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
.+....++..|...+..++.++...|.+...+..++++|...+. .+.-+|...++.+....+.....|+++|..
T Consensus 53 ~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLF------eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 126 (154)
T 2ocy_A 53 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF------DEANNMVADARKEKYAIEILNKRLTEQLRE 126 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999999999998886654 566677788888888888888888888775
Q ss_pred hh
Q 005753 604 IS 605 (679)
Q Consensus 604 ~~ 605 (679)
..
T Consensus 127 ~~ 128 (154)
T 2ocy_A 127 KD 128 (154)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.28 E-value=0.23 Score=56.02 Aligned_cols=78 Identities=8% Similarity=0.064 Sum_probs=56.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
..+.+++..++++.+......+..++++++.++++++++++.......+++.++.+.+.+++......++.+|++.+.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555556666666655566666777777777777777888888888888888888887888888888888877653
No 43
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.21 E-value=3 Score=42.14 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 005753 532 TEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAH----QKKKLEEEIALLQSQL 601 (679)
Q Consensus 532 ~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~----~~~~~~~~i~~L~~~l 601 (679)
..|..+++....+...+|+++.++.++++.++..++...+.+..++..++.... ....++.++..|..+.
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r 166 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKK 166 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555555555444443322 2333444444444443
No 44
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.85 E-value=2.8 Score=39.84 Aligned_cols=74 Identities=14% Similarity=0.238 Sum_probs=50.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
..+.+++..|+..|..++.-+....+.+.+|+.++..+. .++..++..+.....++.++.+.|..|+++-+-.
T Consensus 65 ~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~-------~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 65 SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQ-------EEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566678888888888777777777777766655544 4555666666666677777777777777775543
Q ss_pred h
Q 005753 605 S 605 (679)
Q Consensus 605 ~ 605 (679)
.
T Consensus 138 e 138 (168)
T 3o0z_A 138 E 138 (168)
T ss_dssp H
T ss_pred h
Confidence 3
No 45
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.76 E-value=0.38 Score=58.60 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHhcccc-----CCCeEEEEEEEeecceeee
Q 005753 171 RGIMVRAMEDILAGVSL-----DTDSVTVSYLQLYMETIQD 206 (679)
Q Consensus 171 ~GIipra~~~LF~~i~~-----~~~~V~vS~lEIYnE~v~D 206 (679)
.+|.-|.+.||...|+. ......+..+.||.=.+++
T Consensus 405 k~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 405 KHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE 445 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC
Confidence 36666777777666643 1235677788887555444
No 46
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.37 E-value=0.68 Score=40.08 Aligned_cols=74 Identities=26% Similarity=0.275 Sum_probs=62.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
+....++..|...|..++.++...|.+...+..++++|...+ ..+.-+|...++.+....+....+|+.+|...
T Consensus 22 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL------FeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 22 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL------FDEANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566778899999999999999999999999999888655 46677899999999999999999999998754
No 47
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=94.25 E-value=4.3 Score=39.49 Aligned_cols=13 Identities=54% Similarity=0.759 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 005753 589 KLEEEIALLQSQL 601 (679)
Q Consensus 589 ~~~~~i~~L~~~l 601 (679)
.++..+..+..++
T Consensus 220 ~~~~~l~~l~~~~ 232 (284)
T 1c1g_A 220 KYEEEIKVLSDKL 232 (284)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 48
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.19 E-value=0.014 Score=55.36 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=37.0
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..++||........|+.+++.+ ..+++++--.....++-||++|||||+.+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 3567888766666788888665 55566554333456788999999999997
No 49
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.13 E-value=0.83 Score=39.91 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 529 GELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.+..+++..+....++....|.++..|+.++..++.+++...+.+...+..|+.........+.++..|.+++.++.
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34446777777777888888999999999999999999999999999999999888888888888888888876554
No 50
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.88 E-value=5 Score=38.87 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIA 595 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~ 595 (679)
.+..|+..+...+.....+..++.+|+-.-+.++...-.....+..+...|..+-+..+=++.++.
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556555666666667777777777777777666677777777777766555555555555
No 51
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.55 E-value=1.2 Score=38.75 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 529 GELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.+..+++..+....++....+.++..|+.++..+..+++...+.+...+..|+.........+.++..|.+++..+.
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34446667777777778888899999999999999999999999999999999888888888888888888876553
No 52
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.12 E-value=0.037 Score=53.16 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=35.1
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcc-eEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYN-GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N-~tIfaYGqTgSGKTyTm 160 (679)
..++||.+......+..+++.+ ..++...-.+.. ..|+-||++|+|||+.+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 3567887766555677777754 444554433322 67899999999999987
No 53
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.85 E-value=6.3 Score=36.99 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 482 YMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQ 561 (679)
Q Consensus 482 ~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~ 561 (679)
...++..|++.+.....++...+...++ ...+-.....+|..|..+|..-..+....|-.+..|+..++.
T Consensus 40 aE~k~~eLEeeL~~v~~nlKsLE~seek----------asqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~ 109 (155)
T 2efr_A 40 SEGKSAELEEELKTVTNNLKSLEAQAEK----------YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 109 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666544444333332111 111223455555566666655555555556666666666666
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 005753 562 WKRSEASGNTEIFKLRQMLEDEAHQKKKL 590 (679)
Q Consensus 562 ~~~~~~~~~~ei~~l~k~l~~~~~~~~~~ 590 (679)
+...+..-......++.+|...-.+...+
T Consensus 110 lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 110 LEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66555555555555555555444444433
No 54
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.65 E-value=0.81 Score=42.29 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 545 RKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 545 ~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
...+++++.++..++..++.++...+.+++++.++++..+++...++.++..|+.+|.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555556666666666666666666667777777766654
No 55
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.47 E-value=1.9 Score=38.72 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=22.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 568 SGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 568 ~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
....++..++|.++++.-.+..++.+|..|+.+|.-+
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666544
No 56
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.38 E-value=0.053 Score=56.58 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=34.5
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.++||.+......+..++. .+..++...-.+....|+-||++|+||||.+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 4678876554445666666 3455566544444567889999999999998
No 57
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.00 E-value=8.1 Score=36.26 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=55.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.....+..|+..-.+-.++...++.+|+.|..++.+....-+.....+.+|++.+++.......-..+...+..+|.
T Consensus 53 ~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 53 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666777888889999999888888888888888888888887776666666666666666654
No 58
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.83 E-value=3.8 Score=36.70 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 480 KDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQV 559 (679)
Q Consensus 480 ~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~ 559 (679)
..|+..|..|..++........... -.+..+...+..++.+.+.+...+...|.++..|+..+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~-----------------leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVE-----------------VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 4588888888888774433222211 13344555666778888888888899999999999999
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 560 AQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 560 ~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
++..-....+...+..|+.+|.-.+ +--++++..|+.+
T Consensus 79 D~~~l~r~dLE~~iesL~eEl~FLK---k~heeEl~eLq~q 116 (119)
T 3ol1_A 79 DNASLARLDLERKVESLQEEIAFLK---KLHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 8877777777777777777776552 2335566666544
No 59
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.48 E-value=3.2 Score=37.64 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=38.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.......++..++..+.+....++.++.....+..+...+...+..-.+.+.....+++.....+..++..+..|+.++.
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666555555555555544444444444444443333444444444444444444444444444443
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.44 E-value=1.4 Score=48.56 Aligned_cols=35 Identities=9% Similarity=0.209 Sum_probs=15.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVA 560 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~ 560 (679)
+++.+|..|+.+++......+.++.-|.++..++.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444444444444433333
No 61
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.30 E-value=3.2 Score=45.83 Aligned_cols=9 Identities=33% Similarity=0.191 Sum_probs=0.0
Q ss_pred cccccccce
Q 005753 647 SVPHATGLL 655 (679)
Q Consensus 647 ~~~~~~~~~ 655 (679)
|++|.||-.
T Consensus 255 s~~~g~gs~ 263 (562)
T 3ghg_A 255 STSYGTGSE 263 (562)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 566766654
No 62
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.28 E-value=2.3 Score=39.17 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=35.9
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 515 DVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEI 594 (679)
Q Consensus 515 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i 594 (679)
..+.|+.+..-....+...|++.++. .++++..|+.++...+..++....++.++++++.....+..+++.+.
T Consensus 61 LaALNiadEl~k~~~~~~~L~~~l~~-------~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 61 MMYLNIADDYFKAKKMADSLSLDIEN-------KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544444444444444433332 34444555555555555555555555555555555555555555443
No 63
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.90 E-value=5.9 Score=34.41 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=44.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
...+.+..|+...+.-..+...++..+...+.+..+...+...++..+..+...|+............+..-++.+..+.
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555443333333333333333333333
Q ss_pred hhhH-HHHhhh
Q 005753 606 FEAD-EVRCIQ 615 (679)
Q Consensus 606 ~~~~-~~~~~~ 615 (679)
.+.. +.|+|+
T Consensus 86 ~ev~~L~Rriq 96 (101)
T 3u1c_A 86 SEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 3333 446665
No 64
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.83 E-value=3 Score=37.58 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 537 LLLKETQLRKAAEEEVNNLKIQVAQWK 563 (679)
Q Consensus 537 ~l~~~~~~~~~~E~~~~~l~~~~~~~~ 563 (679)
.+.....+.++.|+..++|++++.++.
T Consensus 93 ~~~e~E~kAqa~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 93 SLSEIERKAQANEQRYSKLKEKYSELV 119 (120)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444566677888889988887653
No 65
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.72 E-value=3.6 Score=36.19 Aligned_cols=77 Identities=23% Similarity=0.248 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEA---SGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~---~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~ 606 (679)
++..|+..|.--...-..-+..+.+++.++.++...++ -+.+.+.=++.-...++..++++.+++..|+.+|+.+-.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 45556655554444444445566666666666555433 244455555666778888999999999999999876543
No 66
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.19 E-value=0.2 Score=46.02 Aligned_cols=74 Identities=24% Similarity=0.245 Sum_probs=61.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
+....++..|...+..++.++...|.+...+..++++|...+. .+.-+|..+++.+...++.....|+++|...
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF------eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF------DEANNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH------HHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788999999999999999999999999998886554 5667888888889999999999999888755
No 67
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.75 E-value=8.4 Score=33.35 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005753 527 IVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 527 ~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~ 606 (679)
..+.+..|+...++-..+...++..+...+.+..+...++..++..+..+...++...............-++.+..+..
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555544444444444444433333333333333333333333
Q ss_pred hhH-HHHhhhh
Q 005753 607 EAD-EVRCIQN 616 (679)
Q Consensus 607 ~~~-~~~~~~~ 616 (679)
+.. +.|+|+.
T Consensus 87 evasLnRriql 97 (101)
T 3u59_A 87 EVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 322 4476653
No 68
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.63 E-value=4.7 Score=37.56 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHH
Q 005753 537 LLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ-LLQISFEADEV 611 (679)
Q Consensus 537 ~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~-l~~~~~~~~~~ 611 (679)
.+...+.....++.++.+|+..+.+..+..+..+.|+..++-++........+++++-..|-.+ +....++|+.|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666677777777777777777788888888888888878888888888777777 44668888876
No 69
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.46 E-value=4.7 Score=42.84 Aligned_cols=15 Identities=0% Similarity=0.290 Sum_probs=7.2
Q ss_pred hhhhhHHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLK 540 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~ 540 (679)
+++.+|.-|+..+..
T Consensus 117 eLe~~i~~lk~~V~~ 131 (390)
T 1deq_A 117 DLRSRIEILRRKVIE 131 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555554433
No 70
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=89.39 E-value=5 Score=34.08 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=46.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 521 KDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 521 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
++.......++..++..++++...++.++.....|..+...+... +.+...+.+.....+..++..+..|+.+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777666666666655555555544444433 5555555566666677777777777777
Q ss_pred HH
Q 005753 601 LL 602 (679)
Q Consensus 601 l~ 602 (679)
|.
T Consensus 86 l~ 87 (89)
T 3bas_A 86 VG 87 (89)
T ss_dssp HT
T ss_pred hh
Confidence 64
No 71
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.04 E-value=20 Score=35.97 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=57.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.+.....++..++..+...+.+....+..+..++.++.+++..+....+++... ++....+...+..+...|...+.
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~e~~~e~~~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENE---VKNIKETQQIIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCC
Confidence 444555555555555555555555555555555555555554444433333332 22222334444444444444332
Q ss_pred --hhhhhhHHHHh----h----hhcccchhhhhHhhhhchhhhhhhhhhhhee-ecccccccceecc
Q 005753 603 --QISFEADEVRC----I----QNFFACCGLVLSLLFFPLFPLFFSCVSILFK-ISVPHATGLLLHN 658 (679)
Q Consensus 603 --~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 658 (679)
.+... +..|. + -.+++|-| .|+-|-|-.|.-|.--=+ |.-||-.-+|++.
T Consensus 175 ~~lL~~Y-erir~~~~g~avv~v~~~~C~G-----C~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 175 PKIYSFY-ERIRRWAKNTSIVTIKKQACGG-----CFIRLNDKIYTEVLTSGDMITCPYCGRILYAE 235 (256)
T ss_dssp HHHHHHH-HHHHHHHGGGSEEECBTTBCTT-----TCCBCCHHHHHHHHHSSSCEECTTTCCEEECS
T ss_pred HHHHHHH-HHHHHhCCCceEEEeeCCccCC-----CCeeeCHHHHHHHHCCCCEEECCCCCeeEEeC
Confidence 11111 11111 1 12344444 344555666665542111 4567776666654
No 72
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.93 E-value=5.3 Score=34.24 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 543 QLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 543 ~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
+..+.+|.++..++.+-. .........+|..++++++....++.+++-+|..|..++..
T Consensus 30 qqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 30 QQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554322 22333457889999999999999999999999888777654
No 73
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.78 E-value=1.1 Score=38.83 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
++..++.++.+++..+.....++..|+..|..++..+...+....+++.+|..+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777666644
No 74
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.73 E-value=2.5 Score=39.68 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=41.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.+..++.+++.+.+.|.....+-..+| .++.++.++..++.....++..|+..|.+++..+...+.+..+++.+|.
T Consensus 14 ~qs~LeD~L~~~R~el~~~~~ri~~lE----~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElE 89 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQKAAIENYN----QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 89 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTH----HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444433 2333444455555556666666666666666666555555555555554
Q ss_pred h
Q 005753 603 Q 603 (679)
Q Consensus 603 ~ 603 (679)
.
T Consensus 90 e 90 (154)
T 2ocy_A 90 D 90 (154)
T ss_dssp H
T ss_pred H
Confidence 3
No 75
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.29 E-value=5.1 Score=33.85 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 548 AEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 548 ~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
+...+.+++.++++-.........++..++|-+....-.+..++.+|..|+.+|.-+
T Consensus 26 ~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 26 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666777888888888888888888888888888887643
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.26 E-value=24 Score=38.42 Aligned_cols=10 Identities=40% Similarity=0.554 Sum_probs=6.4
Q ss_pred eEEEEecCCC
Q 005753 309 KLVVVDLAGS 318 (679)
Q Consensus 309 kL~fVDLAGS 318 (679)
.|..+||.|.
T Consensus 238 ~L~~L~l~~N 247 (487)
T 3oja_A 238 NLEHFDLRGN 247 (487)
T ss_dssp TCCEEECTTC
T ss_pred CCCEEEcCCC
Confidence 4566777764
No 77
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.82 E-value=6.6 Score=32.64 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.....++.++.+.........++|..+++.+.....+..+.++........|.+++
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444445555555555444444555555555555554443
No 78
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.74 E-value=0.21 Score=51.51 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=32.2
Q ss_pred eccccCCCCChHHHHHHhhHHHHHHHhcCcc----eEEEeeccCCCCccccc
Q 005753 113 FDEVLTEFASQKRVYQAVAKPVVESVLDGYN----GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 113 FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N----~tIfaYGqTgSGKTyTm 160 (679)
||.+|+..---..+.+.++..++.+.+...+ ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4444444433466777777777777654222 36788999999999876
No 79
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=86.53 E-value=7.4 Score=33.92 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=23.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWK 563 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~ 563 (679)
....+++.++...+.+.+.....++.++..++..+..+.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445556666666666666666667777766666553
No 80
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.96 E-value=0.4 Score=48.00 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=32.8
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHH-----HHHhcCcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVV-----ESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV-----~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.+.||.+.+.+...+.+.+.+ ..+- ..+-......|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 578899998877766665543 2211 1111122345899999999999987
No 81
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.74 E-value=0.42 Score=44.03 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=21.7
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.++..+..+....++-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 3444455566778899999999999987
No 82
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=85.65 E-value=53 Score=37.19 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=18.3
Q ss_pred hcCcceEEEeeccCCCCccccc
Q 005753 139 LDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 139 l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+.+-...|...|.+|+|||+.|
T Consensus 34 i~~~~~~VaivG~pnvGKStLi 55 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLM 55 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHH
Confidence 4566677889999999999876
No 83
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=85.42 E-value=0.96 Score=51.35 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=3.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005753 520 AKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQ 586 (679)
Q Consensus 520 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~ 586 (679)
++.+..+.+.++..|+..-.+++..+..++.++.+.......+..+.+...++-.+++.++..+++.
T Consensus 382 l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~ 448 (575)
T 2i1j_A 382 LEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRK 448 (575)
T ss_dssp ------------------------------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555665555556666666667777777777777777777777777777666665444
No 84
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=85.22 E-value=7 Score=33.48 Aligned_cols=74 Identities=23% Similarity=0.247 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 532 TEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEA---SGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 532 ~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~---~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
..|...|..-......-+..+.+|++.+.+++..++ -+.+.+.=++.-...++.+++++.+++..|..++..+-
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345555544444444455666666666666664433 24445555566667888899999999999999887553
No 85
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.84 E-value=1.5 Score=40.21 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
+++..++.+++++..++.....++..|+..|.+++..+...+.+..+++.+|..+
T Consensus 25 ~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 25 ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777788888888888888888888777777777777777776644
No 86
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=84.73 E-value=8.7 Score=31.41 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 534 VKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIAL 596 (679)
Q Consensus 534 l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~ 596 (679)
+.++|+....+...+|..+..++.++++.+.+-.....++..+...|.-.-.+...+.+.+.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555555555444444444444443
No 87
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.71 E-value=0.49 Score=45.72 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=28.8
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHh-cCcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVL-DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKTyTm 160 (679)
.++||.+... ..++.++..+ ..+. .+....++-||++|+|||+.+
T Consensus 24 ~~~~~~~~~~-~~~~~~~~~l-----~~~~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 24 DETFTSYYPA-AGNDELIGAL-----KSAASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp TCSTTTSCC---CCHHHHHHH-----HHHHHTCSCSEEEEECSTTSSHHHHH
T ss_pred CCChhhccCC-CCCHHHHHHH-----HHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3567776653 2345555433 2333 335678899999999999987
No 88
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.66 E-value=0.31 Score=48.88 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=22.1
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|+||.+.+.+..-..+.+. +..+. ..+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 47888887653333333322 23332 23467888999999999876
No 89
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=84.51 E-value=26 Score=38.09 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 542 TQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIAL 596 (679)
Q Consensus 542 ~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~ 596 (679)
......+-++..+|+.++.-++......-.-|.-||..|++...++.+||..|.+
T Consensus 103 ~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 103 QQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455556666666665555555567777777777777777777777654
No 90
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=84.10 E-value=17 Score=31.86 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 552 VNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 552 ~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
..+=..++++++.+++....++..++..++.......++...+..++.+...+
T Consensus 49 ~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 49 TQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777777777777777777777777777777776665543
No 91
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.96 E-value=0.35 Score=50.86 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.2
Q ss_pred HHHhcCcceEEEeeccCCCCccccc
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..+-.|...+++-||++|+|||.+.
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3344788889999999999999887
No 92
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.58 E-value=0.47 Score=43.79 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=21.8
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.++..+..+....++-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 3444455566778899999999999887
No 93
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.29 E-value=0.44 Score=48.06 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=32.2
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-----HHhcCcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-----SVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-----~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.++||.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 578899887655444554444333211 111134456899999999999887
No 94
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=83.20 E-value=6.5 Score=32.75 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 537 LLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIAL 596 (679)
Q Consensus 537 ~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~ 596 (679)
+|+....+...+|..+..++.++++.+.+-.....++..+...|.-.-.+...+.+.+.+
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333444444555555555555444444444445554444444443444444444433
No 95
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.07 E-value=0.59 Score=48.29 Aligned_cols=48 Identities=25% Similarity=0.510 Sum_probs=30.1
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|+||.+... ..+...+.. +..++..-- +....++-||++|+|||+.+
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 5889887632 344455544 333333211 13346889999999999998
No 96
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=82.84 E-value=17 Score=39.95 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhhcccc
Q 005753 569 GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQNFFAC 620 (679)
Q Consensus 569 ~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~~~~~ 620 (679)
.++++.+.++.+++....++.-+++....++.|+++.-...+...|..-.+|
T Consensus 71 Y~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek~k~eDGyLs~~~aQ 122 (497)
T 3iox_A 71 YQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQ 122 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTSBSSCCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccchhcc
Confidence 3444444444444444445555555555566666544433333334333333
No 97
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.76 E-value=16 Score=30.56 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 005753 552 VNNLKIQVA 560 (679)
Q Consensus 552 ~~~l~~~~~ 560 (679)
+.+|+.+-.
T Consensus 29 ieELKekN~ 37 (81)
T 2jee_A 29 IEELKEKNN 37 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 98
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.68 E-value=0.5 Score=48.67 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=32.5
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHh----cCcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVL----DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l----~G~N~tIfaYGqTgSGKTyTm 160 (679)
.++||.|.+.+..-+.+.+.+..|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 467888877655555555555444221 111 123457899999999999886
No 99
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=82.34 E-value=0.63 Score=48.17 Aligned_cols=44 Identities=23% Similarity=0.485 Sum_probs=29.7
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|+||.+++. ..+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 36889988765 334332 233344444556999999999999886
No 100
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.24 E-value=0.61 Score=46.32 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=28.4
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHH-HHHhcCc----ceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVV-ESVLDGY----NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV-~~~l~G~----N~tIfaYGqTgSGKTyTm 160 (679)
.++||.|.+.+....++-+ +...+- ..++.+. ...++-||++|+|||+.+
T Consensus 12 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 5788988776433333322 211110 0122221 223899999999999987
No 101
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=81.45 E-value=8.8 Score=31.89 Aligned_cols=12 Identities=50% Similarity=0.559 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 005753 590 LEEEIALLQSQL 601 (679)
Q Consensus 590 ~~~~i~~L~~~l 601 (679)
-+.+|+.|+.+|
T Consensus 66 kd~ei~rL~~~l 77 (81)
T 3qh9_A 66 KDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 344555555554
No 102
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=81.07 E-value=16 Score=30.37 Aligned_cols=54 Identities=24% Similarity=0.227 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005753 526 SIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQM 579 (679)
Q Consensus 526 ~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~ 579 (679)
..-.+|.+|+-++......+-++|..+..-++++..++..++...++|..++.+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444444444555555555544444444444444444444433
No 103
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.01 E-value=0.49 Score=48.09 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=32.2
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhcC---cceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDG---YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G---~N~tIfaYGqTgSGKTyTm 160 (679)
..+||.+.+.+..-+.+.+.+..|+.. ..+.| ....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 467888887644444444444444321 12222 3568999999999999886
No 104
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.95 E-value=5.2 Score=33.24 Aligned_cols=56 Identities=11% Similarity=0.028 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005753 529 GELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEA 584 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~ 584 (679)
.+..+++..+.....+....|.++..|+.++..++.+++...+.+......|+...
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666666666777777888888888888888888888888887777777653
No 105
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.62 E-value=14 Score=33.49 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=34.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEV-----------NNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEE 593 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~-----------~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~ 593 (679)
.++...|+.|+..++..+.....+|..+ ..++.++..++.++.....++...-+++.+...-|-+++.+
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~E 120 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQE 120 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433 34444444444444444444444444444444455555555
Q ss_pred HHHH
Q 005753 594 IALL 597 (679)
Q Consensus 594 i~~L 597 (679)
|.+-
T Consensus 121 IatY 124 (131)
T 3tnu_A 121 IATY 124 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 106
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=80.59 E-value=7.8 Score=30.02 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
....++..+.++.........++.+++..+.......+++.++|..++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555666666666666666666666666666554
No 107
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=80.39 E-value=0.7 Score=42.70 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..++-||++|+|||+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45677999999999998
No 108
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=80.08 E-value=0.36 Score=51.64 Aligned_cols=52 Identities=19% Similarity=0.401 Sum_probs=31.2
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHH-HHhcC---cceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDG---YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G---~N~tIfaYGqTgSGKTyTm 160 (679)
..++||.+.+.+.--+.+.+.+..++.. .++.+ -...|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3567888887544333444444333321 11122 2357999999999999886
No 109
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.08 E-value=8.6 Score=40.08 Aligned_cols=121 Identities=15% Similarity=0.165 Sum_probs=71.7
Q ss_pred CCCeEEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcceeeccccCCCC-ChHHHHHHhhHHHHHHHh-c
Q 005753 63 PGRVRVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAETYEFDEVLTEFA-SQKRVYQAVAKPVVESVL-D 140 (679)
Q Consensus 63 ~~~VrV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~a-sQ~~Vy~~~~~plV~~~l-~ 140 (679)
.|.||++.-+-+-..++ -+.++=..+.+. +....+.|.|++|++... +-.+++..-.+..++-++ .
T Consensus 58 KG~IRcFAYi~~~~~p~---------~~~idY~~~~It---~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~ 125 (333)
T 4etp_B 58 KGTMRVYAYVMEQNLPE---------NLLFDYENGVIT---QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQ 125 (333)
T ss_dssp HTCCEEEEEECCSSCCS---------SCEEETTTTEEE---C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHT
T ss_pred cCcEEEEEEECcccCCc---------cEEEecccceEe---ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHcc
Confidence 57888888875422111 112222223332 223567999999997765 334444444588999999 9
Q ss_pred CcceEEEeeccCCCCccccccCCCCCCCCCcchHHHHHHHHHhc--cccCCCeEEEEEEEeecce-eeecCCCC
Q 005753 141 GYNGTVMAYGQTGTGKTYTLGPLGEEDPATRGIMVRAMEDILAG--VSLDTDSVTVSYLQLYMET-IQDLLDPT 211 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm~G~g~~~~~~~GIipra~~~LF~~--i~~~~~~V~vS~lEIYnE~-v~DLL~~~ 211 (679)
+.|+.|+..|+.-- .-+---.+..|... +-...+.+.+-|+.+-++. ..|||.+.
T Consensus 126 ~~NfslIsis~~~w----------------~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 126 KKNFNLISLSTTPH----------------GSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp TCCEEEEEEESSCC----------------CHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred CCCeeEEEecCCCc----------------HHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 99999999886410 11222233333322 0113447888888887666 69999875
No 110
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=80.07 E-value=14 Score=32.46 Aligned_cols=62 Identities=6% Similarity=-0.038 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEV 611 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~ 611 (679)
+++.+++..+.++......+...+.+.-.++++...+.....+++..=.++|..|....-..
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~ 82 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 82 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666666666777777777888887788888888887777777665443333
No 111
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.59 E-value=23 Score=31.82 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALL 597 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L 597 (679)
++..++.++..++.++.....++...-+++.+...-|-+++.+|.+-
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444544444555555555543
No 112
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=79.28 E-value=11 Score=32.88 Aligned_cols=72 Identities=21% Similarity=0.174 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 533 EVKKLLLKETQLRKAAEEEVNN-------LKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~E~~~~~-------l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
+++.+..+-+-..+++.++-.. |+.++++.+..+...+.+..+..+.++..+.....+...+..|+.+|.+-
T Consensus 6 EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 6 EVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444334 44444444444444444444444444444444455555555555555444
No 113
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=79.26 E-value=34 Score=30.36 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLE 581 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~ 581 (679)
.+++|+.++..+...+....+++++|++..+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 3445555555444444444444444444433
No 114
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.11 E-value=1.4 Score=44.18 Aligned_cols=21 Identities=24% Similarity=0.116 Sum_probs=18.6
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566788999999999999886
No 115
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.80 E-value=0.5 Score=47.83 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=28.1
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHH-HHHhcCc----ceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVV-ESVLDGY----NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV-~~~l~G~----N~tIfaYGqTgSGKTyTm 160 (679)
.++||.|.+.+....++-+.+ ..+- ..++.++ ...|+-||++|||||+.+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~-~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHH-HHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHH-HHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 577888877643333332221 1110 0122222 223899999999999987
No 116
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=78.75 E-value=38 Score=30.63 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 005753 549 EEEVNNLKIQV 559 (679)
Q Consensus 549 E~~~~~l~~~~ 559 (679)
++++..|+.++
T Consensus 59 QKEi~~Lrae~ 69 (167)
T 4gkw_A 59 QKEIGKLRAEL 69 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=78.56 E-value=0.52 Score=49.17 Aligned_cols=44 Identities=27% Similarity=0.378 Sum_probs=27.9
Q ss_pred ccCCCCChHHHHHHhhHHHHHHHh-cCcceEEEeeccCCCCccccc
Q 005753 116 VLTEFASQKRVYQAVAKPVVESVL-DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 116 VF~~~asQ~~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKTyTm 160 (679)
+++.-..++...+.+.. .+..++ .+...+++-||++|+|||+++
T Consensus 17 ~p~~~~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCSCCTTCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCCCCCCHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33333445666655532 233333 355668999999999999987
No 118
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.17 E-value=2.7 Score=45.87 Aligned_cols=125 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred EEEEecCCCCchhhhccCCCCceEEeCCCceEEEeccCCCCCcc-----------eeeccccCCCCChHHHHHHhhHHHH
Q 005753 67 RVAVRLRTRNAEEMVADADFGDCVELLPELKRLKLRKNNWDAET-----------YEFDEVLTEFASQKRVYQAVAKPVV 135 (679)
Q Consensus 67 rV~vRvRP~~~~E~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------F~FD~VF~~~asQ~~Vy~~~~~plV 135 (679)
+.+|++......+.... +..|.++.....+...-+.+.... -+||.|-+-+.--+++.+.+..|+.
T Consensus 117 ~~~v~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~ 193 (428)
T 4b4t_K 117 SYVVRILSTLDRELLKP---SMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLV 193 (428)
T ss_dssp EEEECBCSSSCTTTCCT---TCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccHhhCCC---CceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHh
Q ss_pred H-HHhcCcceE----EEeeccCCCCccccc-------------cCCCCCCCCCcchHHHHHHHHHhccccCCCeEEE
Q 005753 136 E-SVLDGYNGT----VMAYGQTGTGKTYTL-------------GPLGEEDPATRGIMVRAMEDILAGVSLDTDSVTV 194 (679)
Q Consensus 136 ~-~~l~G~N~t----IfaYGqTgSGKTyTm-------------~G~g~~~~~~~GIipra~~~LF~~i~~~~~~V~v 194 (679)
. ..+..+... |+-||+.|+|||++. ...++-.....|--++.++++|.........|-+
T Consensus 194 ~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~Iif 270 (428)
T 4b4t_K 194 QADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIF 270 (428)
T ss_dssp CHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeee
No 119
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.11 E-value=43 Score=35.60 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLR 577 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~ 577 (679)
++|+..++-+..-+......-.+++
T Consensus 151 qRLE~~Id~c~~~C~~sC~~~l~~~ 175 (390)
T 1deq_A 151 KRLEVDIDIKIRSCKGSCSRALEHK 175 (390)
T ss_pred HHHHHHHHHHhcccccccchhhhhh
Confidence 3333444444444443333333333
No 120
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=77.40 E-value=1.6 Score=45.53 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=25.8
Q ss_pred CChHHHHHHhhHHHHHHHhcCcc-e--EEEeeccCCCCccccc
Q 005753 121 ASQKRVYQAVAKPVVESVLDGYN-G--TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 121 asQ~~Vy~~~~~plV~~~l~G~N-~--tIfaYGqTgSGKTyTm 160 (679)
..++...+.+.. .+..++.|.. . +++-||++|+|||.++
T Consensus 20 ~gr~~~~~~l~~-~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLDI-LLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHHH-HHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHH-HHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 344555555433 3455554533 4 7899999999999987
No 121
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.36 E-value=35 Score=30.29 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHH
Q 005753 587 KKKLEEEIALLQSQLLQISFEADEV 611 (679)
Q Consensus 587 ~~~~~~~i~~L~~~l~~~~~~~~~~ 611 (679)
.+.++++|.+|...|..++.+.+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666555555533
No 122
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=76.99 E-value=21 Score=33.20 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 540 KETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 540 ~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
.+.+.-..++.++..++.++.++..++......+..++-++....-+-..++++...|+++-
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666666665555555555555555555555555555555553
No 123
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.72 E-value=23 Score=38.43 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEA----HQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~----~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
.+++++.+++..+.+.++.-..-+--+..|+.-|+.+. ...+.+|.+|.+|..+|..++.+.+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333333333333222 2345566677777777665544443
No 124
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=76.61 E-value=1.1 Score=43.37 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=18.3
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..+++|.| ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445567876 67889999999987
No 125
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.40 E-value=0.65 Score=49.12 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=31.5
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHH----hcCcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESV----LDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~----l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..+||.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 45678887754433444444433322111 2345667999999999999887
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=76.12 E-value=1.3 Score=48.41 Aligned_cols=49 Identities=27% Similarity=0.462 Sum_probs=29.4
Q ss_pred CcceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 108 AETYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 108 ~~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
...|+||..... .++...+..+ ..+... .|....++-||++|+|||+.+
T Consensus 99 ~~~~tfd~fv~g-~~n~~a~~~~-~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 99 NPDYTFENFVVG-PGNSFAYHAA-LEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CTTCSGGGCCCC-TTTHHHHHHH-HHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCCChhhcCCC-CchHHHHHHH-HHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 346889886532 2333344332 233332 231346889999999999998
No 127
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=76.11 E-value=53 Score=36.13 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005753 575 KLRQMLEDEAHQKKKLEEEIA 595 (679)
Q Consensus 575 ~l~k~l~~~~~~~~~~~~~i~ 595 (679)
+.+..|+....++.+...++.
T Consensus 84 eY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 84 DYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 128
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=76.04 E-value=35 Score=28.82 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
.++.+-.+-...+..+++.|...-+-|+.++-.+-.++...+..+++-+
T Consensus 36 ~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkA 84 (101)
T 1d7m_A 36 SLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHH
Confidence 3333333333333334444444444555555555566666666666644
No 129
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=75.93 E-value=1.1e+02 Score=34.57 Aligned_cols=13 Identities=8% Similarity=0.437 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 005753 590 LEEEIALLQSQLL 602 (679)
Q Consensus 590 ~~~~i~~L~~~l~ 602 (679)
.++++..|+.|+.
T Consensus 565 ~~~~~~~~~~ei~ 577 (592)
T 1f5n_A 565 FQKESRIMKNEIQ 577 (592)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 130
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.86 E-value=1.3 Score=42.15 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=17.8
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 344567766 577889999999763
No 131
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=75.56 E-value=1.2 Score=42.24 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=18.0
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.| ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 344567766 567789999999873
No 132
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.50 E-value=0.53 Score=46.60 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=16.4
Q ss_pred cceEEEeeccCCCCccccc
Q 005753 142 YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm 160 (679)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4456899999999999887
No 133
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=75.06 E-value=32 Score=29.74 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 569 GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 569 ~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
...++.+++..+.....+...++.++..|+.++
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 134
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.87 E-value=0.65 Score=46.21 Aligned_cols=50 Identities=26% Similarity=0.268 Sum_probs=28.3
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhc----CcceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLD----GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~----G~N~tIfaYGqTgSGKTyTm 160 (679)
.++||.|.+.+..-+.+.+.+ ..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 567888877643333333221 11110 0111 13446899999999999887
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=74.61 E-value=1.4 Score=41.43 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=16.8
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343345999999999999887
No 136
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.49 E-value=1.2 Score=48.84 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=36.6
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhc--C--cceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLD--G--YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~--G--~N~tIfaYGqTgSGKTyTm 160 (679)
.-+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||++.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 457899988766666777777777652 3333 2 2356899999999999775
No 137
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=74.43 E-value=30 Score=32.03 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 005753 588 KKLEEEIALLQSQL 601 (679)
Q Consensus 588 ~~~~~~i~~L~~~l 601 (679)
...+..|..|+.+|
T Consensus 97 e~aE~k~~eLEeeL 110 (147)
T 2b9c_A 97 ELSEGKCAELEEEL 110 (147)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 138
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=74.43 E-value=74 Score=34.91 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=3.5
Q ss_pred hhhhhhh
Q 005753 637 FSCVSIL 643 (679)
Q Consensus 637 ~~~~~~~ 643 (679)
-+|.-|+
T Consensus 214 ~dC~di~ 220 (464)
T 1m1j_B 214 RECEDIY 220 (464)
T ss_dssp SSHHHHH
T ss_pred CCHHHHH
Confidence 4555544
No 139
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=74.24 E-value=32 Score=28.50 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 575 KLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 575 ~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
++..++.+...+...++.+|..|+...++++
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666777777777777666554
No 140
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.23 E-value=1.8 Score=45.23 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=26.5
Q ss_pred CChHHHHHHhhHHHHHHHhcC-cceEEEeeccCCCCccccc
Q 005753 121 ASQKRVYQAVAKPVVESVLDG-YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 121 asQ~~Vy~~~~~plV~~~l~G-~N~tIfaYGqTgSGKTyTm 160 (679)
..+++..+.+.. .+..++.| ...+++-||++|+|||+++
T Consensus 23 ~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 23 PFREDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TTCHHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CChHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 345555555533 34555444 4568999999999999887
No 141
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.00 E-value=0.95 Score=47.18 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=31.7
Q ss_pred eeeccccCCCCChHHHHHHhhHHHHH-HHhcCc---ceEEEeeccCCCCccccc
Q 005753 111 YEFDEVLTEFASQKRVYQAVAKPVVE-SVLDGY---NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 111 F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G~---N~tIfaYGqTgSGKTyTm 160 (679)
.+||.|.+-+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46788877654444454444444321 333442 246889999999999887
No 142
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.90 E-value=26 Score=38.49 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 005753 592 EEIALLQSQ 600 (679)
Q Consensus 592 ~~i~~L~~~ 600 (679)
..|..|+..
T Consensus 182 ~ki~~l~~~ 190 (464)
T 1m1j_B 182 KKIQKLENA 190 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 143
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.76 E-value=1.6 Score=45.46 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=31.0
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcce--EEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNG--TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~--tIfaYGqTgSGKTyTm 160 (679)
.++||.+.+. +.+...+ ..++..+-.|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG~----~~~~~~l-~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRAA-GVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESC----HHHHHHH-HHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccCh----HHHHHHH-HHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 4567777664 4444332 3345555566653 8899999999999886
No 144
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=73.42 E-value=24 Score=30.14 Aligned_cols=40 Identities=28% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 544 LRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 544 ~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
....+|.++.+|+.+++.+..+......++..++..+++.
T Consensus 50 ~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 50 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999988888888887777766666655
No 145
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.36 E-value=1.5 Score=47.67 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=22.4
Q ss_pred HHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 133 PVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+++..++..-.+.|...|+||||||.||
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3455555566778999999999999998
No 146
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.10 E-value=13 Score=33.49 Aligned_cols=62 Identities=3% Similarity=0.096 Sum_probs=34.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQ 586 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~ 586 (679)
..+.++...++.|+..++..+.....+|..+.+.+..+. ..+...+..|..+..+|...+.+
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHH
Confidence 345666666777777777666666777777766665443 23333344444444444444333
No 147
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=72.56 E-value=1.5 Score=42.94 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=18.4
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..+++|.| ++..++||||||.+
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 445667877 68889999999987
No 148
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=72.24 E-value=21 Score=30.06 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=45.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 527 IVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 527 ~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
+...+..++.+.+.|...+...|.++..|+.-+++..-....+...+..|+.+|.-.
T Consensus 26 ~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 26 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455778888889999999999999999999988877777777777777776543
No 149
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=71.92 E-value=0.99 Score=44.38 Aligned_cols=24 Identities=46% Similarity=0.774 Sum_probs=18.7
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.| ++..++||||||.+.
T Consensus 61 i~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 61 IIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445567877 678999999999873
No 150
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=71.41 E-value=8.9 Score=31.81 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
.+|+.+.+|+.++.-....++.++..+.+.+++|+....+...+.+.+..++.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566667777777777777777777777777777666666666665555543
No 151
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.87 E-value=6.5 Score=44.53 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005753 543 QLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEA 608 (679)
Q Consensus 543 ~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~ 608 (679)
+++..+|++..+|+.+-..-..+...+..++.+....+....++.+.-+++-..|+.+|..+....
T Consensus 384 ~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~ 449 (575)
T 2i1j_A 384 QRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQ 449 (575)
T ss_dssp ----------------------------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666665556666667777777777777777777777888888888876554433
No 152
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=70.75 E-value=1.4 Score=44.69 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=16.7
Q ss_pred CcceEEEeeccCCCCccccc
Q 005753 141 GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm 160 (679)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457999999999999886
No 153
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.73 E-value=2 Score=44.60 Aligned_cols=41 Identities=39% Similarity=0.510 Sum_probs=25.7
Q ss_pred eeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 112 EFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 112 ~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|+.+++ |+.+.+.+ -..+-.|--..++-||+.|+|||+++
T Consensus 23 ~~~~~~g----~~~~~~~L----~~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTV----RKFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCS----CHHHHHHH----HHHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcC----cHHHHHHH----HHHHhcCCCceEEEECCCCCCHHHHH
Confidence 3566664 55555433 22333553223788999999999997
No 154
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.50 E-value=1.7 Score=46.28 Aligned_cols=26 Identities=42% Similarity=0.560 Sum_probs=20.4
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+.+++.--.+.|...|+||||||.+|
T Consensus 115 l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 44445455568899999999999998
No 155
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=70.28 E-value=1.9 Score=42.06 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=18.1
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.| ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 445567877 567789999999873
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.68 E-value=1.3 Score=45.91 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=17.1
Q ss_pred CcceEEEeeccCCCCccccc
Q 005753 141 GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm 160 (679)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44568999999999999887
No 157
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=69.56 E-value=2 Score=41.37 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=18.1
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 445567877 567789999999874
No 158
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=69.43 E-value=18 Score=39.61 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=59.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKK-----KLEEEIALL 597 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~-----~~~~~i~~L 597 (679)
-.......+.+|+..|+...+......+.+..++..+..-+.....++.-+.+.++|||+...-++ ..+..|+.|
T Consensus 89 ye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l 168 (461)
T 3ghg_B 89 QERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVL 168 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHH
Confidence 344677788888888888888888888888888888877777666666666777777776544333 456666666
Q ss_pred HHHHHhhhhhh
Q 005753 598 QSQLLQISFEA 608 (679)
Q Consensus 598 ~~~l~~~~~~~ 608 (679)
+..+.......
T Consensus 169 ~~~~~~~~~~i 179 (461)
T 3ghg_B 169 RSILENLRSKI 179 (461)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665444433
No 159
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.39 E-value=48 Score=35.79 Aligned_cols=8 Identities=25% Similarity=0.227 Sum_probs=4.0
Q ss_pred hhhhhhhh
Q 005753 636 FFSCVSIL 643 (679)
Q Consensus 636 ~~~~~~~~ 643 (679)
.-+|.-|.
T Consensus 150 ~~sC~~i~ 157 (409)
T 1m1j_C 150 GRDCQDIA 157 (409)
T ss_dssp ESSHHHHH
T ss_pred CcCHHHHH
Confidence 34665443
No 160
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.38 E-value=58 Score=28.11 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=38.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------chHHHHHHHHHHHHHHHHHHHHH
Q 005753 527 IVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEAS---------------GNTEIFKLRQMLEDEAHQKKKLE 591 (679)
Q Consensus 527 ~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~---------------~~~ei~~l~k~l~~~~~~~~~~~ 591 (679)
...+...++++++........++.++++++.=.+++...-.. ..+.+..+.+.++......++++
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le 90 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555554444455555554444444443322211 24455555555555555556666
Q ss_pred HHHHHHHHHHHhh
Q 005753 592 EEIALLQSQLLQI 604 (679)
Q Consensus 592 ~~i~~L~~~l~~~ 604 (679)
..+..++.++..+
T Consensus 91 ~~~~~l~~~l~~l 103 (117)
T 2zqm_A 91 RQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555444
No 161
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.34 E-value=14 Score=33.36 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 005753 592 EEIALLQSQLL 602 (679)
Q Consensus 592 ~~i~~L~~~l~ 602 (679)
..|..|+.+|.
T Consensus 84 ~~i~~lE~eL~ 94 (131)
T 3tnu_A 84 EMIGSVEEQLA 94 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 162
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=68.20 E-value=43 Score=29.22 Aligned_cols=74 Identities=7% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhhcccchhh
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQNFFACCGL 623 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~~~~~~~~ 623 (679)
.++++...++.++++....+.+-...+-.++++.-+....++..+..-......+..+-......++....|.+
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 45555566666666666666666666666666666666777777777777766666666666555554444433
No 163
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=68.06 E-value=47 Score=27.62 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 531 LTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 531 i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
.-+|+..|+.+.+-++...+++...+.-...++. +|.+.......+..++..|++++.+
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~es--------------kL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFAS--------------QLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3377888888877777777666666665555443 3333333344445555555555544
No 164
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=67.90 E-value=1.1 Score=42.48 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 118 TEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 118 ~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.+..-|.+++. .+++|.+ ++..++||||||++.
T Consensus 33 ~l~~~Q~~~i~--------~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 33 QLRPYQMEVAQ--------PALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp CCCHHHHHHHH--------HHHTTCC--EEEECSCHHHHHHHH
T ss_pred CchHHHHHHHH--------HHhcCCC--EEEEcCCCCCHHHHH
Confidence 44445665554 3456665 567899999999986
No 165
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=67.60 E-value=2.3 Score=41.20 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=18.0
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.|. +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 3455678765 77789999999873
No 166
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=67.40 E-value=1.6 Score=45.19 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=30.9
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhcCc---ceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDGY---NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G~---N~tIfaYGqTgSGKTyTm 160 (679)
..+||.|.+.+.--+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356788877544444444444444321 122222 346899999999999886
No 167
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=67.35 E-value=1.6 Score=43.71 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=17.8
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..++.|.| +++.++||||||.+
T Consensus 85 i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 85 IRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHhCCCc--EEEEccCCCCchHH
Confidence 344556766 68889999999987
No 168
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=67.10 E-value=2.9 Score=45.67 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=31.5
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcc--eEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYN--GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N--~tIfaYGqTgSGKTyTm 160 (679)
.|.||.|.+ |+++.+.+ ..+++.+..|.. ..++-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 566777765 55665544 345566666653 36788999999999874
No 169
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.04 E-value=1.7 Score=47.68 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=35.3
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhcCc----ceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDGY----NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G~----N~tIfaYGqTgSGKTyTm 160 (679)
..+||.|-+-+.--+++.+.+..|+.. ..+.++ .-.|+-||+.|+|||++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 467888887765556666666666542 334332 357899999999999875
No 170
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=66.83 E-value=2.4 Score=41.85 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=17.7
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 344567876 566789999999864
No 171
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=66.54 E-value=2.2 Score=43.81 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=19.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCcccc
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
.+..++.|-+..+++.++||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHH
Confidence 34566777445578899999999977
No 172
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=66.47 E-value=83 Score=29.20 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=37.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIAL 596 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~ 596 (679)
+.+.+....+.++.++|..|...+..+...+.+....+. ..+......+.+.+..++....-+.++...|..
T Consensus 75 ~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~---~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 75 KTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQK---DVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556666667777777776666666544444433222 223333334444555555555555555555543
No 173
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=65.76 E-value=1.8 Score=45.65 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=31.6
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhcCc---ceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDGY---NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G~---N~tIfaYGqTgSGKTyTm 160 (679)
..+||.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 457888877655444555554444221 223321 235888999999999886
No 174
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=65.19 E-value=1.6 Score=44.48 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=27.6
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhcCcc----eEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDGYN----GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G~N----~tIfaYGqTgSGKTyTm 160 (679)
..+||.|-+.+.--+.+.+.+..|+-. .++++++ ..++-||++|||||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 356677766544445555555555432 2333322 22899999999999886
No 175
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=64.86 E-value=2.8 Score=40.84 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=16.9
Q ss_pred HHHhcCcceEEEeeccCCCCcccc
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
..+++|.| ++..++||||||.+
T Consensus 56 ~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 56 PLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHhCCCC--EEEECCCCCcHHHH
Confidence 34567877 56678999999987
No 176
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=64.81 E-value=62 Score=27.16 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 576 LRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 576 l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
|..++.+..+-..++......|+..+..
T Consensus 54 L~~ql~eaEe~~~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 54 LFGSMKQLEDKVEELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 177
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=64.72 E-value=71 Score=28.22 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005753 531 LTEVKKLLLKETQLRKAAEEE 551 (679)
Q Consensus 531 i~~l~~~l~~~~~~~~~~E~~ 551 (679)
..+++..|.+++..++.+|..
T Consensus 15 ~~ql~~qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 15 LRQANDQLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444433
No 178
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.66 E-value=27 Score=30.31 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005753 585 HQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 585 ~~~~~~~~~i~~L~~~l~ 602 (679)
++.+++..++..|+..+.
T Consensus 75 ~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666666554
No 179
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=64.60 E-value=2.4 Score=41.60 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=16.9
Q ss_pred HHHhcCcceEEEeeccCCCCccccc
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..+++|.|. +..++||||||.+.
T Consensus 61 ~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 61 PVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHhCCCCE--EEECCCcCHHHHHH
Confidence 445578764 56679999999873
No 180
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.24 E-value=2.9 Score=43.87 Aligned_cols=23 Identities=48% Similarity=0.777 Sum_probs=18.8
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..++.|.+ ++..++||||||.+
T Consensus 71 i~~~~~~~~--~lv~a~TGsGKT~~ 93 (414)
T 3eiq_A 71 ILPCIKGYD--VIAQAQSGTGKTAT 93 (414)
T ss_dssp HHHHHTTCC--EEECCCSCSSSHHH
T ss_pred hHHHhCCCC--EEEECCCCCcccHH
Confidence 455667887 67899999999987
No 181
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=64.17 E-value=2.9 Score=41.49 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=17.7
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.| ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 344567866 566779999999874
No 182
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=64.08 E-value=2.5 Score=41.50 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=17.3
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+..|. .++..|+||||||..+
T Consensus 70 i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 70 LEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 34444564 4678899999999765
No 183
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=64.00 E-value=77 Score=27.95 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 529 GELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEI 594 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i 594 (679)
..++.|+..+.+.+.....+..++.+|+-.-+.++...-.....+..+...|..+-+...=++.++
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666667777777777777766666666666666666665544433344333
No 184
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=63.86 E-value=3.9 Score=36.91 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.2
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
+..|+-||.+|||||+..
T Consensus 27 ~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp SSCEEEEEETTCCHHHHH
T ss_pred CCcEEEECCCCccHHHHH
Confidence 445788999999999886
No 185
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=63.70 E-value=72 Score=27.49 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 005753 585 HQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 585 ~~~~~~~~~i~~L~~~l~~~ 604 (679)
..++.++..|..|++++...
T Consensus 77 ~~~e~ie~~i~~le~~~~~l 96 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKL 96 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 186
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=63.68 E-value=2.7 Score=42.53 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=16.9
Q ss_pred CcceEEEeeccCCCCccccc
Q 005753 141 GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm 160 (679)
.-...+.-.|+||||||.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34567888999999999998
No 187
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=63.38 E-value=61 Score=31.82 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 005753 545 RKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLR 577 (679)
Q Consensus 545 ~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~ 577 (679)
...++...+++.++++++....+....++...=
T Consensus 148 ~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF 180 (213)
T 1ik9_A 148 NERLLRDWNDVQGRFEKAVSAKEALETDLYKRF 180 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665555544433
No 188
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=63.33 E-value=2.9 Score=46.42 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=30.0
Q ss_pred eeeccccCCCCChHHHHHHhhHHHH-----HHHhcCcceEEEeeccCCCCccccc
Q 005753 111 YEFDEVLTEFASQKRVYQAVAKPVV-----ESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 111 F~FD~VF~~~asQ~~Vy~~~~~plV-----~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..||.+.+....-+.+.+.+..++- ..+-......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 4566666554444455555443321 1111234567999999999999876
No 189
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=62.96 E-value=3.7 Score=41.98 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=23.5
Q ss_pred HHHHHHHhcCc---ceEEEeeccCCCCccccc
Q 005753 132 KPVVESVLDGY---NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 132 ~plV~~~l~G~---N~tIfaYGqTgSGKTyTm 160 (679)
...+..+++|. --||+-||+.|||||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 34477888887 348999999999999886
No 190
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=62.74 E-value=3.9 Score=42.10 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=28.3
Q ss_pred eeccccCCCCChHHHHHHhhHHHHHHHh--cCcceEEEeeccCCCCccccc
Q 005753 112 EFDEVLTEFASQKRVYQAVAKPVVESVL--DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 112 ~FD~VF~~~asQ~~Vy~~~~~plV~~~l--~G~N~tIfaYGqTgSGKTyTm 160 (679)
+||.+.+ ++.+...+ ...+..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4666655 45555544 23344433 344567899999999999886
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=62.50 E-value=1.9 Score=47.06 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=29.7
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhcC---cceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDG---YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G---~N~tIfaYGqTgSGKTyTm 160 (679)
..+||.|.+.+.--+.+.+.+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 467888877533333333333333211 22333 2356889999999999886
No 192
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=62.40 E-value=4.4 Score=38.29 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.7
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...++-||++|+|||+.+
T Consensus 45 ~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp CSEEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 347899999999999887
No 193
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.33 E-value=4.4 Score=42.54 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=19.9
Q ss_pred HHHhcC---cceEEEe--eccCCCCccccc
Q 005753 136 ESVLDG---YNGTVMA--YGQTGTGKTYTL 160 (679)
Q Consensus 136 ~~~l~G---~N~tIfa--YGqTgSGKTyTm 160 (679)
..+..| -...++- ||+.|+|||..+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555 5567888 999999999987
No 194
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=61.76 E-value=36 Score=29.57 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 552 VNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIA 595 (679)
Q Consensus 552 ~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~ 595 (679)
+.++++.+.++..+......++..++........+...+.+.|+
T Consensus 39 LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 39 LLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555444444443
No 195
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=61.58 E-value=74 Score=26.96 Aligned_cols=75 Identities=12% Similarity=0.197 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------chHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 529 GELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEAS---------------GNTEIFKLRQMLEDEAHQKKKLEEE 593 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~---------------~~~ei~~l~k~l~~~~~~~~~~~~~ 593 (679)
.+...++++++........++.+++++..=.+++...-.. ..+.+..+.+.++......++++..
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~ 87 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQ 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554445555555555544444444332221 2344445555555555555555555
Q ss_pred HHHHHHHHHh
Q 005753 594 IALLQSQLLQ 603 (679)
Q Consensus 594 i~~L~~~l~~ 603 (679)
+..++.++..
T Consensus 88 ~~~~~~~l~~ 97 (107)
T 1fxk_A 88 EERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 196
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=61.46 E-value=70 Score=26.63 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHH
Q 005753 552 VNNLKIQVAQWKRSEASGNTEIFK 575 (679)
Q Consensus 552 ~~~l~~~~~~~~~~~~~~~~ei~~ 575 (679)
+..|+.++++++.....+.++..+
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333
No 197
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=61.40 E-value=54 Score=27.41 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 548 AEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 548 ~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
++.++..++..+.+++.++.....++....+++.....-|-+++.+|.+-.+=|
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666667777776655443
No 198
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=61.40 E-value=38 Score=25.96 Aligned_cols=46 Identities=13% Similarity=0.087 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEI 594 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i 594 (679)
+..+.+++.++......+......+.++...|...+.++.++...|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444455555555555554444
No 199
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=61.11 E-value=3.4 Score=44.83 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=20.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCcccc
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34556777667789999999999977
No 200
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=61.01 E-value=2.1 Score=41.27 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=17.1
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..+++|.| ++..++||||||.+
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHH
Confidence 344556766 46778999999987
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.52 E-value=3.1 Score=45.07 Aligned_cols=51 Identities=27% Similarity=0.394 Sum_probs=35.7
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhc--C--cceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLD--G--YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~--G--~N~tIfaYGqTgSGKTyTm 160 (679)
.-+||.|-+-+.--+++-+.+.-|+.. ..+. | ....|+-||+.|+|||+..
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 356788887766666777777777653 3333 2 2356899999999999775
No 202
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=60.34 E-value=2.3 Score=41.99 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=19.6
Q ss_pred HHHHhcCc--ceEEEeeccCCCCccccc
Q 005753 135 VESVLDGY--NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~--N~tIfaYGqTgSGKTyTm 160 (679)
+..++.|. ..+++-||+.|||||+..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 44555563 246999999999999885
No 203
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=60.23 E-value=4.8 Score=40.97 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=26.8
Q ss_pred eeccccCCCCChHHHHHHhhHHHHHHHh--cCcceEEEeeccCCCCccccc
Q 005753 112 EFDEVLTEFASQKRVYQAVAKPVVESVL--DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 112 ~FD~VF~~~asQ~~Vy~~~~~plV~~~l--~G~N~tIfaYGqTgSGKTyTm 160 (679)
+||.+.+. ..+...+ ..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig~----~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQ----ERLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSC----HHHHHHH-HHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCH----HHHHHHH-HHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 56666554 4444333 22333332 234567888999999999886
No 204
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=59.73 E-value=2.8 Score=43.22 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=23.9
Q ss_pred CCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 118 TEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 118 ~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+.-..|+++-..+.. .+..| ..|+-||++|+|||+.+
T Consensus 27 ~~i~g~~~~~~~l~~----~l~~~--~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 27 KVVVGQKYMINRLLI----GICTG--GHILLEGVPGLAKTLSV 63 (331)
T ss_dssp TTCCSCHHHHHHHHH----HHHHT--CCEEEESCCCHHHHHHH
T ss_pred cceeCcHHHHHHHHH----HHHcC--CeEEEECCCCCcHHHHH
Confidence 333446666554433 33344 35788999999999887
No 205
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=59.41 E-value=3.6 Score=43.03 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=19.5
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..++.|.+..++..++||||||.+
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~ 80 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAA 80 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHH
T ss_pred HHHHhcCCCCeEEEECCCCchHHHH
Confidence 4555677556678889999999987
No 206
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=59.40 E-value=5.1 Score=40.51 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=25.7
Q ss_pred eccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 113 FDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 113 FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
|+.+.+ |+++.+.+. ..+ -.|....++-||++|+|||++.
T Consensus 24 ~~~~~g----~~~~~~~l~-~~l---~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 24 LDDIVG----QEHIVKRLK-HYV---KTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp TTTCCS----CHHHHHHHH-HHH---HHTCCCEEEEESCTTSSHHHHH
T ss_pred HHHhhC----CHHHHHHHH-HHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 555543 566655442 222 2454434899999999999887
No 207
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=59.25 E-value=3.7 Score=43.17 Aligned_cols=24 Identities=42% Similarity=0.733 Sum_probs=18.3
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.| ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 344567877 677889999999763
No 208
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.17 E-value=23 Score=38.17 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 548 AEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 548 ~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
+++++..|+++..+++...+..+.++.++..++..+...++++..++..|+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444455555555555555555555555555666666655554
No 209
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=58.81 E-value=6.7 Score=40.03 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=22.2
Q ss_pred hhHHHHHHHhcCc-----ceEEEeeccCCCCccccc
Q 005753 130 VAKPVVESVLDGY-----NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 130 ~~~plV~~~l~G~-----N~tIfaYGqTgSGKTyTm 160 (679)
+...++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4455566666553 356889999999999775
No 210
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=58.58 E-value=1.1e+02 Score=30.22 Aligned_cols=15 Identities=7% Similarity=-0.075 Sum_probs=6.2
Q ss_pred HhHHHHHHHHHhhcc
Q 005753 394 ETASTILFGQRAMKV 408 (679)
Q Consensus 394 ETlsTL~fa~rak~I 408 (679)
+++..++-..-.+.+
T Consensus 28 ~~~~~~~~s~l~~ql 42 (243)
T 2a01_A 28 DYVSQFEGSALGKQL 42 (243)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444433333433
No 211
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=58.57 E-value=25 Score=28.65 Aligned_cols=8 Identities=38% Similarity=0.547 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005753 593 EIALLQSQ 600 (679)
Q Consensus 593 ~i~~L~~~ 600 (679)
+|..|+.+
T Consensus 55 eI~~Lqse 62 (72)
T 3nmd_A 55 LIQMLQNE 62 (72)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 212
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=58.51 E-value=4 Score=40.38 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=24.0
Q ss_pred ccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 114 DEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 114 D~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..-|.+..-|.+.+. .++++.+ ++.+|+||+|||++.
T Consensus 89 ~~~~~l~~~Q~~ai~--------~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 89 DAEISLRDYQEKALE--------RWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp CCCCCCCHHHHHHHH--------HHTTTSE--EEEEESSSTTHHHHH
T ss_pred cCCCCcCHHHHHHHH--------HHHhCCC--EEEEeCCCCCHHHHH
Confidence 333444455655443 4556655 667789999999985
No 213
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=58.29 E-value=3.8 Score=42.42 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=19.1
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..++.|-+..++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 44556774455788899999999863
No 214
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=58.21 E-value=51 Score=26.85 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=24.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWK 563 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~ 563 (679)
..++.+++.+++.|+..+..+.....++..+.+.++..-
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI 55 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKI 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 455666677777777776666666566655555555433
No 215
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=58.06 E-value=1.2e+02 Score=28.05 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 481 DYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVA 560 (679)
Q Consensus 481 ~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~ 560 (679)
...+++..|+.+|+..... +..+..++.+...++.-++..|.+...+....+..+.+|..++.
T Consensus 49 ~deEr~~~lE~qLkeak~~-----------------aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHI-----------------AEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH-----------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777776632211 11233456777788888888888888888888888888887777
Q ss_pred HHHHHHhh
Q 005753 561 QWKRSEAS 568 (679)
Q Consensus 561 ~~~~~~~~ 568 (679)
.....+..
T Consensus 112 ~~~~nlKs 119 (147)
T 2b9c_A 112 TVTNNLKS 119 (147)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55544444
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=58.03 E-value=4.1 Score=40.97 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.7
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999887
No 217
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=58.01 E-value=71 Score=27.28 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
.+..++..++..+..++.++.....++.....++.....-|-+++.+|.+-.+=|
T Consensus 34 ~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666677777777655433
No 218
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=57.89 E-value=2.9 Score=37.79 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.6
Q ss_pred CcceEEEeeccCCCCccccc
Q 005753 141 GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm 160 (679)
..+..|+-||.+|||||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566899999999999875
No 219
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=57.64 E-value=3.9 Score=41.36 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=24.9
Q ss_pred ChHHHHHHhhHHHHHHHhcCc------ceEEEeeccCCCCccccc
Q 005753 122 SQKRVYQAVAKPVVESVLDGY------NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 122 sQ~~Vy~~~~~plV~~~l~G~------N~tIfaYGqTgSGKTyTm 160 (679)
.|..+.+.+...+ .....|. ...++-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i-~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAI-RRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHH-HHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHH-HHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 4666666654433 3332221 367999999999999886
No 220
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=57.55 E-value=81 Score=26.11 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 546 KAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQL 601 (679)
Q Consensus 546 ~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l 601 (679)
..++.++..++.++..++.++.....++....+++.....-|-+++-+|.+-.+=|
T Consensus 22 ~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 22 ENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33445566667777777777777777777777777777777777888877765544
No 221
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=57.30 E-value=33 Score=27.00 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005753 543 QLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLE 581 (679)
Q Consensus 543 ~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~ 581 (679)
+....++.++.+|+.+-.+|....+.+..|+..|+..|.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555566666666666666555555555555543
No 222
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.27 E-value=30 Score=24.21 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQML 580 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~l 580 (679)
.|+.+++++......+..++..|+..+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344444444444444444444444443
No 223
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=57.06 E-value=1.1e+02 Score=27.26 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 528 VGELTEVKKLLLKETQLRKAAEEEVNNLKIQVA 560 (679)
Q Consensus 528 ~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~ 560 (679)
......|+..++.-.+....++..+.+++.-++
T Consensus 7 ~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e 39 (133)
T 1fxk_C 7 VAQLNIYQSQVELIQQQMEAVRATISELEILEK 39 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544444444444444444333
No 224
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.91 E-value=2.3 Score=46.87 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=34.3
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhcC----cceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDG----YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G----~N~tIfaYGqTgSGKTyTm 160 (679)
.-+||.|-+-+.--+++.+.+..|+.. ..+.+ .--.|+-||+.|+|||++.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 367888877655555566666655542 23333 3457999999999999764
No 225
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=56.59 E-value=4.9 Score=44.81 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=16.4
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|.+ +...|+||||||.||
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 6766 677899999999997
No 226
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=56.37 E-value=4.6 Score=40.86 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=17.2
Q ss_pred HHHhcCcceEEEeeccCCCCccccc
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..+++|.+ ++..++||||||.+.
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHH
Confidence 44557766 567789999999874
No 227
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.30 E-value=4.9 Score=43.96 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=32.1
Q ss_pred eeeccccCCCCChHHHHHHhhHHHHH-HHhc--C--cceEEEeeccCCCCccccc
Q 005753 111 YEFDEVLTEFASQKRVYQAVAKPVVE-SVLD--G--YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 111 F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~--G--~N~tIfaYGqTgSGKTyTm 160 (679)
-+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 46677766544455566666555531 2333 2 3467999999999999764
No 228
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=56.12 E-value=5.4 Score=44.65 Aligned_cols=25 Identities=44% Similarity=0.590 Sum_probs=17.9
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
++.+..|.+.++++ ++||||||+++
T Consensus 191 ~~~~~~~~~~~ll~-~~TGsGKT~~~ 215 (590)
T 3h1t_A 191 VQSVLQGKKRSLIT-MATGTGKTVVA 215 (590)
T ss_dssp HHHHHTTCSEEEEE-ECTTSCHHHHH
T ss_pred HHHHhcCCCceEEE-ecCCCChHHHH
Confidence 34444576655554 89999999997
No 229
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=55.99 E-value=1.1e+02 Score=26.96 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005753 585 HQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 585 ~~~~~~~~~i~~L~~~l~~ 603 (679)
.++..+.+.+..|+.++..
T Consensus 90 ~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4445555556666665543
No 230
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.83 E-value=4.2 Score=41.82 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=25.3
Q ss_pred eeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 112 EFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 112 ~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+|+.+.+...- . ..+...+..|....++-||++|+|||+++
T Consensus 35 ~~~~i~g~~~~----~----~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 35 NLDEVTAQDHA----V----TVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp STTTCCSCCTT----H----HHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred CHHHhhCCHHH----H----HHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 46666654332 2 22333334553334889999999999887
No 231
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=55.46 E-value=4.4 Score=42.38 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=17.6
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 344456766 677889999999763
No 232
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=55.38 E-value=7.5 Score=42.58 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=26.4
Q ss_pred eeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 112 EFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 112 ~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.||.|.+. ++.... ++..+-.+....++-||++|+|||+..
T Consensus 178 ~ld~iiGr----~~~i~~----l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp CSCCCCCC----HHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccCc----HHHHHH----HHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 45655554 444333 334343455566788999999999887
No 233
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=54.99 E-value=3.5 Score=43.92 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=19.0
Q ss_pred HHHhcCcceEEEeeccCCCCccccc
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..+.-.....|.-.|+||||||.+|
T Consensus 129 ~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 129 LELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp HHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHhhcCCCEEEEECCCCCCHHHHH
Confidence 3333344567889999999999998
No 234
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=54.63 E-value=7.4 Score=39.76 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=15.9
Q ss_pred cceEEEeeccCCCCccccc
Q 005753 142 YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm 160 (679)
....++-||++|+|||+++
T Consensus 47 ~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CCSEEEECSSTTSSHHHHH
T ss_pred CCeEEEeeCcCCCCHHHHH
Confidence 3456888999999999987
No 235
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=54.41 E-value=4.5 Score=44.25 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=25.3
Q ss_pred CChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 121 ASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 121 asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|+.+... ...+...+-.|.-..++-||++|+|||+..
T Consensus 29 vGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 345665521 133333444565568999999999999886
No 236
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=54.13 E-value=18 Score=25.33 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWK 563 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~ 563 (679)
++.+|+.++++...+...+|.++.+|++-+.+++
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 4567777777777777777888888877776553
No 237
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=54.12 E-value=5.2 Score=42.01 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=17.4
Q ss_pred HHHhcCcceEEEeeccCCCCccccc
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..+++|.|+ +..++||||||.+.
T Consensus 47 ~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 47 PIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHccCCCE--EEEcCCCCHHHHHH
Confidence 345678774 67889999999763
No 238
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=53.99 E-value=1.9e+02 Score=29.27 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 005753 571 TEIFKLRQMLEDEAHQ-KKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 571 ~ei~~l~k~l~~~~~~-~~~~~~~i~~L~~~l~~~ 604 (679)
..+.+++..|+-..++ +.++...+..|.+.++..
T Consensus 176 ~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~ 210 (273)
T 3s84_A 176 ASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAEL 210 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444555555433332 233333444444444433
No 239
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.95 E-value=94 Score=25.74 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=20.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQ 561 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~ 561 (679)
..++.+++.++..|+..+..+.....++..+-+.++.
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666666666555555555555554444443
No 240
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=53.78 E-value=3.7 Score=45.42 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=28.3
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHHHH-----hcC----cceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVESV-----LDG----YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~~~-----l~G----~N~tIfaYGqTgSGKTyTm 160 (679)
..++||.|.+.+..-+++.+ ++..+ +.+ ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e-----~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKE-----VVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHH-----HHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-----HHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 35678888775333333332 22221 111 2345899999999999886
No 241
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=53.60 E-value=34 Score=31.52 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chHHHHHHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEAS-------GNTEIFKLRQMLEDEAHQKK 588 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~-------~~~ei~~l~k~l~~~~~~~~ 588 (679)
.+..+...++..+...+..+..+..++.+..++..+..+ ..+.-..+++.|+..++.++
T Consensus 67 ~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKK 132 (146)
T 2xnx_M 67 ELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKK 132 (146)
T ss_dssp TTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------------------
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555566666655555554444333 23334444455544444433
No 242
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=53.26 E-value=8.5 Score=39.79 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=23.6
Q ss_pred CChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 121 ASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 121 asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..|+.+.+.+..- +.. ......++-||+.|+|||.++
T Consensus 19 vg~~~~~~~L~~~-l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTALANG-LSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHHHHH-HHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHHHHH-HHh--CCCCeEEEEECCCCCCHHHHH
Confidence 3456666544322 221 223457899999999999886
No 243
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=52.80 E-value=32 Score=29.03 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=34.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhchHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKI---QVAQWKRSEASGNTEIFKLRQMLED 582 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~---~~~~~~~~~~~~~~ei~~l~k~l~~ 582 (679)
..++...+.+.+++.++...+..+|+-...+.. +......++..-+..|..|+.+|.+
T Consensus 21 ~~le~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~e 81 (86)
T 1cxz_B 21 QQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQE 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777888888888777776666543 2334444444444455444444443
No 244
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=52.49 E-value=6.8 Score=40.70 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999987
No 245
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=52.38 E-value=1.3e+02 Score=32.54 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=8.9
Q ss_pred HHHHHHHHhhchHHHHHHHHHHH
Q 005753 559 VAQWKRSEASGNTEIFKLRQMLE 581 (679)
Q Consensus 559 ~~~~~~~~~~~~~ei~~l~k~l~ 581 (679)
+..++..+....+.|..|+.+|+
T Consensus 93 ~~~~e~~~~~~~~~i~~l~~~~~ 115 (409)
T 1m1j_C 93 IIRYENTILAHENTIQQLTDMHI 115 (409)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHH
Confidence 33333333333334444444443
No 246
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.38 E-value=31 Score=37.26 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
.++.++.+++++..+++...+..++++.++..+|-.+..+++++...+..|+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555555555555555555555555555555555556666666665554
No 247
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=51.80 E-value=72 Score=27.73 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=11.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLR 545 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~ 545 (679)
++++..++...+++|--.+++.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKL 58 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKL 58 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444333
No 248
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=51.64 E-value=61 Score=27.89 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=24.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLK 556 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~ 556 (679)
.+.+.+..+|.+|++.++++.+-+..+++...-+.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~ 49 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYE 49 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888888887777765554443
No 249
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=51.46 E-value=1.7e+02 Score=32.02 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 570 NTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 570 ~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
...|..|+..++.....+.+++..|..++..
T Consensus 162 ~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 162 PTNLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445555555555555555555555544433
No 250
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=51.30 E-value=94 Score=24.98 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 555 LKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALL 597 (679)
Q Consensus 555 l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L 597 (679)
++.|++++........+++...+.++.+.+.....++.+|..|
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555555555555555555555555555555544
No 251
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=51.25 E-value=2.7e+02 Score=30.26 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHHH
Q 005753 419 DYKSLARRLDIQLDK 433 (679)
Q Consensus 419 ~~~~l~~~l~~e~~~ 433 (679)
.+..|.++++..+..
T Consensus 23 G~~~L~~r~~~g~~~ 37 (486)
T 3haj_A 23 NYKRTVKRIDDGHRL 37 (486)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 456677776665543
No 252
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=50.90 E-value=4.8 Score=40.57 Aligned_cols=41 Identities=34% Similarity=0.331 Sum_probs=25.3
Q ss_pred eeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 112 EFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 112 ~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|+.+.+ |+.+.+.+ ...+-.|....++-||++|+|||++.
T Consensus 15 ~~~~~~g----~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVG----QDEVIQRL----KGYVERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCS----CHHHHHHH----HTTTTTTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhC----CHHHHHHH----HHHHhCCCCCeEEEECcCCcCHHHHH
Confidence 4555543 45554433 22222454344899999999999886
No 253
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=50.85 E-value=19 Score=24.86 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQML 580 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l 580 (679)
+.|+.+++++-.+...+..++..++..|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444555555555555555555554443
No 254
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=50.67 E-value=26 Score=24.10 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQML 580 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l 580 (679)
+.|+.+++++..+...++.++..+++.+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455555666555555555666555543
No 255
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=50.29 E-value=4.6 Score=40.62 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=15.0
Q ss_pred HhcCcceEEEeeccCCCCccccc
Q 005753 138 VLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 138 ~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
++.|.++ +..++||||||.+.
T Consensus 125 ~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 125 GLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHSEE--EECCCTTSCHHHHH
T ss_pred HHhcCCe--EEEcCCCCCcHHHH
Confidence 3445444 33999999999886
No 256
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=50.16 E-value=6.6 Score=40.73 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=18.2
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.| ++..++||||||.+.
T Consensus 39 i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 39 IPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 455667876 566789999999874
No 257
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=50.08 E-value=6.7 Score=37.88 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=21.7
Q ss_pred HHHHHHhcC-c--ceEEEeeccCCCCccccc
Q 005753 133 PVVESVLDG-Y--NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~G-~--N~tIfaYGqTgSGKTyTm 160 (679)
+-++.++.| . ...+.-+|++|||||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 457777754 3 457888999999999986
No 258
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=50.05 E-value=7.5 Score=43.03 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=19.9
Q ss_pred HHHHHhcCcceEEEeeccCCCCcccc
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
++..++.|-+..+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 34555666566778999999999986
No 259
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=49.64 E-value=6.5 Score=41.60 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=18.0
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..+++|.| ++..++||||||..
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHH
Confidence 445567875 57899999999984
No 260
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=49.33 E-value=1.1e+02 Score=25.24 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
++..+++-|+.--++|..+-.++...|.++..+-.....+.+.+.+....|++
T Consensus 22 q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 22 RAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666666666666666666555544
No 261
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=49.24 E-value=6.2 Score=43.52 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=19.0
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..+++|.+..++..++||||||++
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHH
Confidence 3455677445678889999999987
No 262
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=48.86 E-value=11 Score=43.27 Aligned_cols=45 Identities=31% Similarity=0.451 Sum_probs=31.8
Q ss_pred eeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCcccccc
Q 005753 111 YEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 111 F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~ 161 (679)
|.+..+ .|..+|..-+..+ ++.+-.|... ....|.|||||||||.
T Consensus 2 ~~~~~~-~~~~~q~~ai~~l----~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAGL----VEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHHH----HHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 444444 8889998887654 4555566533 3457999999999993
No 263
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=48.81 E-value=3.4 Score=46.04 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=27.6
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhcCc----ceEEEeeccCCCCccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDGY----NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G~----N~tIfaYGqTgSGKTyTm 160 (679)
.++||.|.+.+..-.++-+. +..+-. ..+..+ ...|+-||++|||||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 56788887753332222221 111100 112222 234899999999999986
No 264
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=48.81 E-value=1e+02 Score=24.72 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKL 590 (679)
Q Consensus 547 ~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~ 590 (679)
-+..++.+++.........+.....+|.+++..+....-+...+
T Consensus 32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566667777777776677777777777777776665555443
No 265
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=48.53 E-value=23 Score=28.68 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLED 582 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~ 582 (679)
++++.+|+.++.+++.....+..+...|+.++..
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777766555544444444444433
No 266
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=48.07 E-value=26 Score=26.67 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 005753 547 AAEEEVNNLKIQVA 560 (679)
Q Consensus 547 ~~E~~~~~l~~~~~ 560 (679)
++|+.+..|++++.
T Consensus 6 aleekvkaleekvk 19 (67)
T 1lq7_A 6 ALEEKVKALEEKVK 19 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 267
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=47.78 E-value=7 Score=44.59 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=17.6
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
|..++..-. ..+-.|+.|||||+|+
T Consensus 198 V~~al~~~~-~~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 198 VLFALSQKE-LAIIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHCSS-EEEEECCTTSCHHHHH
T ss_pred HHHHhcCCC-ceEEECCCCCCHHHHH
Confidence 455553323 3467899999999997
No 268
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=47.76 E-value=30 Score=23.97 Aligned_cols=29 Identities=7% Similarity=0.169 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 005753 552 VNNLKIQVAQWKRSEASGNTEIFKLRQML 580 (679)
Q Consensus 552 ~~~l~~~~~~~~~~~~~~~~ei~~l~k~l 580 (679)
++.|+.|++++-.+...++.++..+++.|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34556666666666666666666666554
No 269
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=47.68 E-value=7 Score=44.42 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=15.9
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
+..++..|++|||||+|+
T Consensus 164 ~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 456889999999999997
No 270
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.58 E-value=1.2e+02 Score=25.19 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh------chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 542 TQLRKAAEEEVNNLKIQVAQWKRSEAS------GNTEIFKLRQMLEDEAHQKKKLEEEIALL 597 (679)
Q Consensus 542 ~~~~~~~E~~~~~l~~~~~~~~~~~~~------~~~ei~~l~k~l~~~~~~~~~~~~~i~~L 597 (679)
++.-..++..|..|+.++..+...+.. -.+.+..+..+++....+...+.++=..|
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666643 22455555555555555555555444444
No 271
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.55 E-value=52 Score=25.52 Aligned_cols=14 Identities=7% Similarity=0.121 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHh
Q 005753 554 NLKIQVAQWKRSEA 567 (679)
Q Consensus 554 ~l~~~~~~~~~~~~ 567 (679)
.|+.++..+..+..
T Consensus 26 ~Le~~~~~L~~~n~ 39 (61)
T 1t2k_D 26 SLEKKAEDLSSLNG 39 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 272
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=47.04 E-value=7.8 Score=41.67 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=18.2
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..++.|.| +++.++||||||.+.
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 344568876 577889999999863
No 273
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=46.87 E-value=81 Score=23.77 Aligned_cols=44 Identities=30% Similarity=0.273 Sum_probs=28.9
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 559 VAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 559 ~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
++|+-...+.+..|-..|+++|++-..+..++|.+-..+++=+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 45555555566666667777777777777777777666665544
No 274
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=46.73 E-value=2.9e+02 Score=29.27 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=21.2
Q ss_pred hhhhheeecccccccceeccccCcccc
Q 005753 639 CVSILFKISVPHATGLLLHNVGSRGVQ 665 (679)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (679)
.-++.|.|+=+.|.|.|-+..|..-||
T Consensus 176 ~Ks~~~~I~G~~ayg~Lk~EsGvHRvq 202 (365)
T 1gqe_A 176 IKSVTIKISGDYAYGWLRTETGVHRLV 202 (365)
T ss_dssp EEEEEEEEESTTHHHHHGGGCEEEEEE
T ss_pred eeEEEEEEECcCHHHHhhhccceEEEE
Confidence 346778889999999998887766665
No 275
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.68 E-value=63 Score=24.54 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 005753 554 NLKIQVAQWKR 564 (679)
Q Consensus 554 ~l~~~~~~~~~ 564 (679)
+++.++..+..
T Consensus 13 ~l~~~l~~L~~ 23 (51)
T 3m91_A 13 QLEARIDSLAA 23 (51)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 276
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=46.28 E-value=5.4 Score=42.91 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.3
Q ss_pred cceEEEeeccCCCCccccc
Q 005753 142 YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm 160 (679)
.+.-++..|.||||||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3566789999999999987
No 277
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=46.23 E-value=9 Score=37.26 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=17.7
Q ss_pred HHHHHhcCcceEEEeeccCCCCccccc
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+++++-.|-- +.-.|++|||||+.|
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHHH
Confidence 4455545554 445899999999987
No 278
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=46.21 E-value=9.7 Score=43.11 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=18.2
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
|+.+++|.+ +++.++||+|||.+
T Consensus 53 i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 53 INVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHcCCC--EEEEECCCChHHHH
Confidence 445567877 67788999999986
No 279
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=46.15 E-value=11 Score=35.86 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=19.4
Q ss_pred HHHHHHHhc--CcceEEEeeccCCCCccccc
Q 005753 132 KPVVESVLD--GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 132 ~plV~~~l~--G~N~tIfaYGqTgSGKTyTm 160 (679)
..+++.+.+ +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 334444442 34456677899999999886
No 280
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=46.07 E-value=7.4 Score=39.70 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=16.7
Q ss_pred HHHhcCcceEEEeeccCCCCccccc
Q 005753 136 ESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 136 ~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
..+++|. ..++..++||||||.+.
T Consensus 38 ~~~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTC-SEEEEECCSSSSHHHHH
T ss_pred HHHhCCC-CCEEEECCCCChHHHHH
Confidence 3445563 23567899999999874
No 281
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=45.70 E-value=8.4 Score=42.04 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=18.3
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..++.|.| ++..++||||||.+.
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Confidence 445567877 567789999999874
No 282
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=45.64 E-value=8.5 Score=38.19 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|+-.|++|||||+..
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999764
No 283
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=45.46 E-value=2e+02 Score=27.08 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 471 LEKERLKYQKDYMESIKKLEERWK 494 (679)
Q Consensus 471 le~e~~~~~~~~~~~i~~le~~l~ 494 (679)
++.++.+....+++++..|.+.+.
T Consensus 42 ~e~~r~k~~~h~~~k~~qlre~~d 65 (169)
T 3k29_A 42 RESERDKVKNHYMQKIRQLREQLD 65 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666777788888877766
No 284
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=45.45 E-value=95 Score=25.30 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
+...++..+.+++.++.....++....+++.....-|-+++.+|.+-.+=
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555666666555443
No 285
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=45.42 E-value=4.8 Score=41.74 Aligned_cols=24 Identities=42% Similarity=0.697 Sum_probs=17.8
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 444566766 567789999999873
No 286
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.41 E-value=1.5e+02 Score=32.85 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=34.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 524 MASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEA----SGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 524 ~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~----~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
+.++.++..+++.+++..+.++.+..+++..+ ++.-+ ...++...++.+......+.+.++++...+++
T Consensus 72 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~-------~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 72 IISTWQELRQLREQIRSLEEEKEAVTEAVRAL-------VVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555444444444444433 22211 01134455555555555566666666666666
Q ss_pred HHH
Q 005753 600 QLL 602 (679)
Q Consensus 600 ~l~ 602 (679)
++.
T Consensus 145 ~l~ 147 (501)
T 1wle_A 145 QFY 147 (501)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 287
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=45.30 E-value=46 Score=27.50 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 570 NTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 570 ~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
.+=|..|+........+++.+..++..|..+|.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555555555566666666555543
No 288
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=45.18 E-value=6.9 Score=46.25 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=26.6
Q ss_pred eeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 112 EFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 112 ~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.||.|.+. ++... .+++.+..+....++-||++|+|||+.+
T Consensus 168 ~ld~viGr----~~~i~----~l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 168 KLDPVIGR----DEEIR----RVIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CSCCCCSC----HHHHH----HHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred CCcccCCc----HHHHH----HHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 45555544 43333 3444444565556788999999999987
No 289
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=44.86 E-value=8.2 Score=36.72 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=20.0
Q ss_pred HHHHHHhc-Cc--ceEEEeeccCCCCccccc
Q 005753 133 PVVESVLD-GY--NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~-G~--N~tIfaYGqTgSGKTyTm 160 (679)
+.++.++. |. ...+.-+|++|||||..+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 34566665 43 345677999999999886
No 290
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=44.66 E-value=22 Score=24.92 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQML 580 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~l 580 (679)
.|+.+++++..+...+..++.+|++++
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 334444444444444444444444433
No 291
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.51 E-value=1.3e+02 Score=25.03 Aligned_cols=30 Identities=7% Similarity=0.148 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005753 546 KAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLED 582 (679)
Q Consensus 546 ~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~ 582 (679)
..++.++++.+.+..++ ..++..+++++++
T Consensus 41 i~~eskL~eae~rn~eL-------~~e~~~l~~~~ee 70 (81)
T 1wt6_A 41 QNFASQLREAEARNRDL-------EAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34455555444444444 4445555554444
No 292
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=44.46 E-value=9.4 Score=36.17 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=22.1
Q ss_pred HHHHHHhc-Cc--ceEEEeeccCCCCccccc
Q 005753 133 PVVESVLD-GY--NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~-G~--N~tIfaYGqTgSGKTyTm 160 (679)
+-++.++. |+ ...+.-+|.+|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 45777775 55 357899999999999886
No 293
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.38 E-value=8.8 Score=38.65 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=16.4
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|.-..++-||+.|+|||++.
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444333889999999999886
No 294
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=44.31 E-value=3.6e+02 Score=29.68 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=29.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAE-EEVNNLKIQVAQWKRSEA 567 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E-~~~~~l~~~~~~~~~~~~ 567 (679)
+....++..|...|++|...+..-| .-+++++.+++.++...+
T Consensus 163 ~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe 206 (526)
T 3iyk_A 163 TEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIE 206 (526)
T ss_pred HHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888877776665 445777887777765544
No 295
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=44.16 E-value=13 Score=35.33 Aligned_cols=19 Identities=21% Similarity=0.029 Sum_probs=15.8
Q ss_pred cceEEEeeccCCCCccccc
Q 005753 142 YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm 160 (679)
-...|...|.+|||||+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457888999999999886
No 296
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=44.16 E-value=51 Score=27.15 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=5.3
Q ss_pred HHHHHhhchHHHHHH
Q 005753 562 WKRSEASGNTEIFKL 576 (679)
Q Consensus 562 ~~~~~~~~~~ei~~l 576 (679)
++..++....-|.+|
T Consensus 19 LE~klAfqE~tIeeL 33 (78)
T 3efg_A 19 LETRLSFQEQALTEL 33 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 297
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=44.03 E-value=12 Score=40.74 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=25.3
Q ss_pred CCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 120 FASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 120 ~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..|++++..+.. .+..| +..++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~~----~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVMK----AIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHHH----HHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHHH----HHhcC-CCEEEEEeCCCCCHHHHH
Confidence 3468887766532 22333 348899999999999887
No 298
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=43.97 E-value=6.5 Score=36.54 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..+.-.|++|||||+.+
T Consensus 10 ei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35677999999999997
No 299
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=43.92 E-value=7.3 Score=40.06 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.0
Q ss_pred CcceEEEeeccCCCCccccc
Q 005753 141 GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm 160 (679)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678899999999999875
No 300
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.71 E-value=98 Score=29.73 Aligned_cols=40 Identities=23% Similarity=0.129 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKK 589 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~ 589 (679)
..+..|..+..-+...++....+|..|+++|+..+.+...
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445555555555555556666666666666666555443
No 301
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=43.69 E-value=38 Score=23.25 Aligned_cols=26 Identities=0% Similarity=0.194 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQM 579 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~ 579 (679)
.|+.+++++-.+...+..++..++..
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 302
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=43.66 E-value=9.5 Score=41.48 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=18.0
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445567876 466789999999873
No 303
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=43.22 E-value=9.5 Score=41.13 Aligned_cols=33 Identities=21% Similarity=0.074 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 118 TEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 118 ~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.+..-|.+.+. .+++|.+ ++..|+||||||.+.
T Consensus 93 ~l~~~Q~~ai~--------~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 93 SLRDYQEKALE--------RWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp CBCHHHHHHHH--------HHTTTTE--EEEECCTTSCHHHHH
T ss_pred CcCHHHHHHHH--------HHHhcCC--EEEEeCCCCCHHHHH
Confidence 34445655443 4555654 677889999999985
No 304
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=43.03 E-value=1.7e+02 Score=25.47 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 005753 587 KKKLEEEIALLQSQLL 602 (679)
Q Consensus 587 ~~~~~~~i~~L~~~l~ 602 (679)
...+++.|..|+++|+
T Consensus 84 Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 84 VSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 305
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.64 E-value=1.5e+02 Score=24.92 Aligned_cols=10 Identities=10% Similarity=0.066 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 005753 591 EEEIALLQSQ 600 (679)
Q Consensus 591 ~~~i~~L~~~ 600 (679)
+.+|..|+++
T Consensus 78 ~~~i~~le~~ 87 (107)
T 1fxk_A 78 QLREKTIERQ 87 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 306
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=42.54 E-value=9 Score=40.23 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.6
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999876
No 307
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=42.32 E-value=11 Score=35.82 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=21.0
Q ss_pred HHHHHHhc-Cc--ceEEEeeccCCCCccccc
Q 005753 133 PVVESVLD-GY--NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 133 plV~~~l~-G~--N~tIfaYGqTgSGKTyTm 160 (679)
+-++.++. |. ...+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45677774 44 356788999999999886
No 308
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=42.22 E-value=50 Score=23.09 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 531 LTEVKKLLLKETQLRKAAEEEVNNLKIQVAQW 562 (679)
Q Consensus 531 i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~ 562 (679)
+.+|+.+++....+...+|.++.+|++-+.++
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 45666666666677777777777777766554
No 309
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=42.21 E-value=79 Score=25.52 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 558 QVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 558 ~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
.+.-+++++.....+|..|+..+.-.-++-+++.++|-.|-
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislN 59 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGT 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhH
Confidence 33444455555555666666666555555566666665543
No 310
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=42.13 E-value=2e+02 Score=26.02 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQS 599 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~ 599 (679)
.+.+|+..+.+-....+.+++-|--|+|+|++++.....--+--..|+-
T Consensus 99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~Lkv 147 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSM 147 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666777777777777888887775443333333333333
No 311
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=42.06 E-value=15 Score=43.36 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=51.3
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHH-HHhcCcc----eEEEeeccCCCCccccc---cC-CCCC---------CCCCc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVE-SVLDGYN----GTVMAYGQTGTGKTYTL---GP-LGEE---------DPATR 171 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~G~N----~tIfaYGqTgSGKTyTm---~G-~g~~---------~~~~~ 171 (679)
.-+||.|-+-+.--+++.+.+.-|+-. .++.++. ..|+-||+.|+|||... .+ .|-. .....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 467888888777667777777666543 3555554 46999999999999774 11 0000 01234
Q ss_pred chHHHHHHHHHhccccC
Q 005753 172 GIMVRAMEDILAGVSLD 188 (679)
Q Consensus 172 GIipra~~~LF~~i~~~ 188 (679)
|-..+.++.+|......
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 66677888888766543
No 312
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=42.05 E-value=12 Score=41.87 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=18.8
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..++.|-+.-+++.++||||||.+
T Consensus 52 i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 52 IKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHccCCCeEEEEcCCCcHHHHH
Confidence 4455655555678889999999986
No 313
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=41.95 E-value=9.8 Score=43.27 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..++..|+.|||||+|+
T Consensus 196 ~~~li~GppGTGKT~~~ 212 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTS 212 (624)
T ss_dssp SEEEEECCTTSCHHHHH
T ss_pred CCeEEECCCCCCHHHHH
Confidence 45678999999999996
No 314
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.60 E-value=32 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLR 577 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~ 577 (679)
.|+.+++++..+.+.+..++..|+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334444444444444444444433
No 315
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=41.42 E-value=1.7e+02 Score=29.14 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=50.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
....+..+...+...|+..--++..+..||+++-.|+.+|.......-..|+.+. .++..++.++..++.++.
T Consensus 150 Sl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lE-------qdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 150 SPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIE-------QNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHH
Confidence 3456667777777788887778888889999999999988877765555544443 444555666666665544
No 316
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=41.30 E-value=2.7e+02 Score=30.37 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 005753 431 LDKLIAEHERQQKAFENEIERITIEAQNQISETERNYADALEKERLKYQ---KDYMESIKKLEERWKIN 496 (679)
Q Consensus 431 ~~~L~~e~e~~~~~~~~e~~~~~~e~~~~l~e~e~~~~~~le~e~~~~~---~~~~~~i~~le~~l~~~ 496 (679)
+..+.++...+....++-+.....++..++.-++++....+...+ .++ +.+..+|++||..+...
T Consensus 91 ~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~Ir-vLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 91 TINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIK-ALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555555566666666666555552222 122 34555666666665533
No 317
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.89 E-value=8.2 Score=39.79 Aligned_cols=15 Identities=40% Similarity=0.744 Sum_probs=14.0
Q ss_pred EEeeccCCCCccccc
Q 005753 146 VMAYGQTGTGKTYTL 160 (679)
Q Consensus 146 IfaYGqTgSGKTyTm 160 (679)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 888999999999987
No 318
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=40.84 E-value=17 Score=37.39 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..+.-.|++|||||.|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46778899999999998
No 319
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=40.76 E-value=1.3e+02 Score=30.62 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005753 570 NTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFE 607 (679)
Q Consensus 570 ~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~ 607 (679)
..++.+.+..++..+.+.+..+..+..++.+|..+...
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~ 150 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN 150 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666666666666655443
No 320
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=40.66 E-value=1.5e+02 Score=24.83 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 005753 588 KKLEEEIALLQSQLL 602 (679)
Q Consensus 588 ~~~~~~i~~L~~~l~ 602 (679)
+.++++|...++.+.
T Consensus 61 ~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 61 ERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444433
No 321
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.65 E-value=1.3e+02 Score=27.33 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 005753 569 GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADE 610 (679)
Q Consensus 569 ~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~ 610 (679)
..+.+.-+.+.++......+++++.+..++.++.........
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777777776655555443
No 322
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=40.53 E-value=3e+02 Score=27.74 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHH
Q 005753 543 QLRKAAEEEVNNLKIQVAQWKRSEA-SGNTEIFKLRQMLEDE 583 (679)
Q Consensus 543 ~~~~~~E~~~~~l~~~~~~~~~~~~-~~~~ei~~l~k~l~~~ 583 (679)
.....++..+.+|+.++.-.-..+. .+...++++++.++..
T Consensus 169 ~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~ 210 (273)
T 3s84_A 169 ELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAEL 210 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444455556666666654433322 2222344445555544
No 323
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=40.37 E-value=6.7 Score=41.56 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=14.6
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
|.-++..|+||||||++|
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 344567899999999998
No 324
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.22 E-value=71 Score=24.99 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005753 556 KIQVAQWK 563 (679)
Q Consensus 556 ~~~~~~~~ 563 (679)
+.+++.+.
T Consensus 29 e~~v~~L~ 36 (63)
T 2wt7_A 29 QAETDQLE 36 (63)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 325
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=40.16 E-value=1.8e+02 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 577 RQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 577 ~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
..+|.+......++..++..++.-|++++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666777777777666653
No 326
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=40.13 E-value=2.7e+02 Score=29.21 Aligned_cols=76 Identities=17% Similarity=0.408 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhh----hhhhHHHHhhhhcccc
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAH-----QKKKLEEEIALLQSQLLQI----SFEADEVRCIQNFFAC 620 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~-----~~~~~~~~i~~L~~~l~~~----~~~~~~~~~~~~~~~~ 620 (679)
..+..|+.+++..++...+....|-+|+.++...+. .+-++...+..|++++.-. +-+-+-..+|+-.|..
T Consensus 523 akldqlknqvdgyeksikkqesaiyelhnqidalrkayytehkgqinkalqelkeqispviqnketdpetksrlqhfyns 602 (761)
T 4fye_A 523 AKLDQLKNQVDGYEKSIKKQESAIYELHNQIDALRKAYYTEHKGQINKALQELKEQISPVIQNKETDPETKSRLQHFYNS 602 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcChhhcCCCCChhHHHHHHHHHHH
Confidence 456788889999999998888899999988886653 5667777788888887632 3334445889999999
Q ss_pred hhhhh
Q 005753 621 CGLVL 625 (679)
Q Consensus 621 ~~~~~ 625 (679)
|..+.
T Consensus 603 caylt 607 (761)
T 4fye_A 603 CAYLT 607 (761)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97653
No 327
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=40.10 E-value=11 Score=42.86 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=18.5
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++|.| ++..++||||||.+.
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 445566776 577899999999874
No 328
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=39.79 E-value=8.9 Score=34.47 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.6
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999764
No 329
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=39.48 E-value=7.2 Score=40.79 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=15.3
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999875
No 330
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=39.07 E-value=1.6e+02 Score=24.28 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhh
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLE------------DEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~------------~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
.+.+|++.+..++..+......+....+..+ .=+.....+++.|..|+++|+.+
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 331
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=38.94 E-value=23 Score=35.69 Aligned_cols=7 Identities=14% Similarity=0.373 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 005753 594 IALLQSQ 600 (679)
Q Consensus 594 i~~L~~~ 600 (679)
|..|++|
T Consensus 84 l~~LkeE 90 (251)
T 3m9b_A 84 LLALREE 90 (251)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 332
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=38.84 E-value=11 Score=44.31 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=17.9
Q ss_pred HHhcCcceEEEeeccCCCCccccc
Q 005753 137 SVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 137 ~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+.-.|....++..|+||||||...
T Consensus 383 ~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 383 DMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hccccCCCcEEEEcCCCCCHHHHH
Confidence 334555556788999999999874
No 333
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.66 E-value=51 Score=23.98 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005753 576 LRQMLEDEAHQKKKLEEEIALLQSQLLQISFE 607 (679)
Q Consensus 576 l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~ 607 (679)
|-+.++....++++-++.|..|+..+.++...
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666666666655443
No 334
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=38.63 E-value=1.3e+02 Score=33.04 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 005753 533 EVKKLLLKETQLRKAA 548 (679)
Q Consensus 533 ~l~~~l~~~~~~~~~~ 548 (679)
+++++.+.|.++++++
T Consensus 295 elkqrqeee~r~~qew 310 (551)
T 2b5u_A 295 QVKQRQDEENRRQQEW 310 (551)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555555444
No 335
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.50 E-value=25 Score=30.46 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 570 NTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 570 ~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
.+++..++++++....+..++.+++..|+.+|..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666777777777777777654
No 336
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=38.30 E-value=1.8e+02 Score=24.41 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005753 551 EVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAH 585 (679)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~ 585 (679)
.+..++.++++.+.....+-+++.+.-..|+....
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~ 40 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDD 40 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 45666777777776666666666555555554433
No 337
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=38.30 E-value=9 Score=35.99 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.4
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|.-.|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566799999999887
No 338
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=38.24 E-value=25 Score=24.35 Aligned_cols=27 Identities=4% Similarity=0.147 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQM 579 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~ 579 (679)
+.|+.+++++-.+...+..++..++..
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 344445555554444445555554443
No 339
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.23 E-value=56 Score=34.19 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
.+.+++.+++..+....+.|..|+.+|+..+....+++..|..|+..
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444455555555554444444444444444444
No 340
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=38.08 E-value=8.3 Score=38.47 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=15.6
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..||..|..|+||||+|
T Consensus 7 l~I~~~~kgGvGKTt~a 23 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAM 23 (228)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCcHHHHH
Confidence 56899999999999998
No 341
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=38.07 E-value=9 Score=41.55 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.1
Q ss_pred HhcCcceEEEeeccCCCCccccc
Q 005753 138 VLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 138 ~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
++.|++-.|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999876
No 342
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=38.06 E-value=12 Score=39.44 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=17.2
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+++| .++..++||+|||.+.
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHH
Confidence 4455667 4456789999999986
No 343
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.93 E-value=79 Score=26.64 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLR 577 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~ 577 (679)
+.+...|+.+-..|+.+++.+..++..|+
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444433333333333333333333
No 344
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=37.79 E-value=17 Score=42.08 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.9
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
++.|-||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 799999999999999999885
No 345
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.77 E-value=42 Score=24.72 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005753 571 TEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFE 607 (679)
Q Consensus 571 ~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~ 607 (679)
.+-.++.....+...+...++..|..|+++++.++.+
T Consensus 17 kenaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 3444555555555566666777777777776655433
No 346
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=37.70 E-value=10 Score=36.32 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 45677899999999887
No 347
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=37.66 E-value=1.9e+02 Score=24.65 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 558 QVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 558 ~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
+..-+......+.+.+.+-+..-.......+.++++|.+|...|..+.
T Consensus 40 QAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 40 QANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333322233456778888888888887665
No 348
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=37.53 E-value=12 Score=36.03 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=19.1
Q ss_pred HHHHhcC-c--ceEEEeeccCCCCccccc
Q 005753 135 VESVLDG-Y--NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G-~--N~tIfaYGqTgSGKTyTm 160 (679)
++.++.| + ...+.-+|++|||||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4556533 3 456788999999999984
No 349
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=37.32 E-value=2.7e+02 Score=26.21 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
++.-.++..++...-.+-++....++..-..+...+.....++..+.+++.+|.++
T Consensus 88 ~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L 143 (201)
T 3u0c_A 88 QQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSEL 143 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444444333333333344444444444444445555555555555555544
No 350
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=37.08 E-value=1.1e+02 Score=31.52 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 571 TEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 571 ~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
.++.+.+..++..+.+.+.++.++..++.+|..+.
T Consensus 115 ~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAE 149 (369)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566555555666666666665555443
No 351
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=37.00 E-value=21 Score=37.19 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.7
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...|.-.|++|+|||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456778999999999998
No 352
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=36.77 E-value=9.7 Score=35.55 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999887
No 353
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=36.71 E-value=1.2e+02 Score=33.50 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 544 LRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 544 ~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
...++..+.+.+..++.++++.-+ +...+..+......+.+.++++...+++++.
T Consensus 48 ~~~~l~~~rn~~sk~i~~~k~~~~----~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 48 DLDEHNKKLNSVQKEIGKRFKAKE----DAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433222 2233444444445555555555555555543
No 354
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=36.68 E-value=39 Score=23.35 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQML 580 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l 580 (679)
+.|+.+++++-.+...++.++..|++.+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455555555555555555555555443
No 355
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=36.57 E-value=1.5e+02 Score=23.23 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005753 552 VNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQ 603 (679)
Q Consensus 552 ~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~ 603 (679)
+..|+.++..++......+.+++++...++....+-.--.+.|..|+.++.+
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~ 59 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVE 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444555555555555555566666666665533322224455555554433
No 356
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=36.43 E-value=10 Score=41.08 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=18.7
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..+++|.+. +++.|+||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4566778664 56789999999986
No 357
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.41 E-value=19 Score=41.84 Aligned_cols=37 Identities=38% Similarity=0.473 Sum_probs=24.3
Q ss_pred hHHHHHHhhHHHHHHHhcCcc------eEEEeeccCCCCccccc
Q 005753 123 QKRVYQAVAKPVVESVLDGYN------GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 123 Q~~Vy~~~~~plV~~~l~G~N------~tIfaYGqTgSGKTyTm 160 (679)
|..+...+... +..+..|.. +.++-||++|+|||++.
T Consensus 496 q~~a~~~l~~~-i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 496 QDEAVVAVAKA-VRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp CHHHHHHHHHH-HHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred hHHHHHHHHHH-HHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 45555554333 344444543 37999999999999886
No 358
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=36.09 E-value=9.6 Score=39.16 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=17.1
Q ss_pred HhcCcceEEEeeccCCCCccccc
Q 005753 138 VLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 138 ~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+++|++..|...|.+|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 57899999999999999999886
No 359
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=36.06 E-value=3.9e+02 Score=28.22 Aligned_cols=131 Identities=12% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHH
Q 005753 459 QISETERNYADALEKERLKYQKDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLL 538 (679)
Q Consensus 459 ~l~e~e~~~~~~le~e~~~~~~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l 538 (679)
++.+....+.+ ...+...+..+|...-+.++.+..+.........+..+. ...++--..-
T Consensus 127 ~l~e~~~~~~~-~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q-------------------~~~~e~~~~~ 186 (373)
T 3hhm_B 127 KLHEYNTQFQE-KSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQ-------------------CQTQERYSKE 186 (373)
T ss_dssp --CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHh-cccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 539 LKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 539 ~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
--++.+..+.+.+++.+..-.+.++..++.+.+.-.+|...|.....+...++.++..|+.+|-++....|
T Consensus 187 ~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd 257 (373)
T 3hhm_B 187 YIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRD 257 (373)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
No 360
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=36.04 E-value=1.3e+02 Score=32.37 Aligned_cols=36 Identities=6% Similarity=0.211 Sum_probs=23.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVA 560 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~ 560 (679)
......+.+|+..|+.........++.+..++..+.
T Consensus 34 ~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~ 69 (411)
T 3ghg_C 34 TKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYN 69 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 455566667777777766666666666666666543
No 361
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=36.03 E-value=2.6e+02 Score=25.59 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 522 DSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKL-RQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 522 ~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l-~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
.....+..+..++...+.+.......++....+|..+.+.+...+.........+ .+...........+.+++..++..
T Consensus 29 ~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e~~~~~ 108 (155)
T 2oto_A 29 HENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELA 108 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhh
Q 005753 601 LLQISF 606 (679)
Q Consensus 601 l~~~~~ 606 (679)
+.....
T Consensus 109 l~~~~e 114 (155)
T 2oto_A 109 IDQASR 114 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 362
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=35.99 E-value=11 Score=35.06 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|.-.|.+|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778999999999886
No 363
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=35.97 E-value=10 Score=42.65 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.9
Q ss_pred CcceEEEeeccCCCCccccc
Q 005753 141 GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm 160 (679)
-.++.++..|..|||||+|+
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHH
Confidence 33667889999999999997
No 364
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.93 E-value=14 Score=40.94 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=15.8
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...++-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357889999999999887
No 365
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.90 E-value=66 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQ 558 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~ 558 (679)
++.+|+.+.+....+...+|+++..|++=
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45677777777777777777777777653
No 366
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=35.88 E-value=8.9 Score=35.97 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 005753 146 VMAYGQTGTGKTYTL 160 (679)
Q Consensus 146 IfaYGqTgSGKTyTm 160 (679)
+.-.|++|||||.++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999987
No 367
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=35.87 E-value=19 Score=42.16 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.9
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
++.|-||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 799999999999999999885
No 368
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=35.63 E-value=17 Score=40.42 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=17.9
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..+..|. -|+-||++|+|||+..
T Consensus 35 ~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 35 LLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHhcCC--eeEeecCchHHHHHHH
Confidence 33444554 5788999999999986
No 369
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=35.54 E-value=15 Score=43.21 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=36.5
Q ss_pred cceeeccccCCCCChHHHHHHhhHHHHH-HHhc----CcceEEEeeccCCCCccccc
Q 005753 109 ETYEFDEVLTEFASQKRVYQAVAKPVVE-SVLD----GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 109 ~~F~FD~VF~~~asQ~~Vy~~~~~plV~-~~l~----G~N~tIfaYGqTgSGKTyTm 160 (679)
..++||.|.+.+..-+.+.+.+..|+.. .++. .....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3588999988877777777776655442 1222 22346899999999999875
No 370
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.48 E-value=31 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHH
Q 005753 555 LKIQVAQWKRSEASGNTEIFKLRQ 578 (679)
Q Consensus 555 l~~~~~~~~~~~~~~~~ei~~l~k 578 (679)
|+.+++++..+...+..|+..|+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444444444444444444444443
No 371
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=35.41 E-value=16 Score=41.46 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=17.5
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
+..++.|.| ++..++||||||..
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHH
Confidence 344567877 46788999999986
No 372
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=35.33 E-value=19 Score=42.18 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.7
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
++.|-||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 799999999999999999885
No 373
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.28 E-value=1.9e+02 Score=23.77 Aligned_cols=43 Identities=30% Similarity=0.305 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
++|-.+++++..+.+. ++.+++....-+.+++..|..|+.+|.
T Consensus 33 ~DLI~rvdELt~E~e~-------l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 33 NDLIAKVDELTCEKDV-------LQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555544444 444455555566677777777777664
No 374
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=35.08 E-value=11 Score=38.18 Aligned_cols=19 Identities=32% Similarity=0.614 Sum_probs=16.1
Q ss_pred cceEEEeeccCCCCccccc
Q 005753 142 YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm 160 (679)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567888999999999887
No 375
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.70 E-value=1.1e+02 Score=29.50 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 546 KAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIA 595 (679)
Q Consensus 546 ~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~ 595 (679)
..+..+...|..+++....+.+.+++++..++......+.+.++-.+.|.
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~ 72 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSE 72 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 33444444455555555555555555555555555444334344444443
No 376
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=34.55 E-value=12 Score=34.13 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|+-.|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35888999999999764
No 377
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=34.49 E-value=19 Score=41.66 Aligned_cols=41 Identities=15% Similarity=0.316 Sum_probs=26.7
Q ss_pred eeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 112 EFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 112 ~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.||.|.+ ++..... +++.+.......++-||.+|+|||+.+
T Consensus 184 ~~d~~iG----r~~~i~~----l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 184 GIDPLIG----REKELER----AIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp CSCCCCS----CHHHHHH----HHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred CCCCccC----CHHHHHH----HHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 4555554 4444433 344444555666788999999999987
No 378
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.33 E-value=21 Score=41.30 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=26.5
Q ss_pred eeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 112 EFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 112 ~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
.||.|.+ +++..+. ++..+..+....++-||++|+|||...
T Consensus 178 ~ld~iiG----~~~~i~~----l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 178 SLDPVIG----RSKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp CSCCCCC----CHHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccC----chHHHHH----HHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 4555554 4444443 344444555566889999999999876
No 379
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.32 E-value=22 Score=41.84 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999876
No 380
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.28 E-value=73 Score=24.27 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 570 NTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 570 ~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
..+++.|+.++++.+...+.+..++..|+++|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555555555554
No 381
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=34.19 E-value=10 Score=35.72 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=13.0
Q ss_pred EEeeccCCCCccccc
Q 005753 146 VMAYGQTGTGKTYTL 160 (679)
Q Consensus 146 IfaYGqTgSGKTyTm 160 (679)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999987
No 382
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=34.09 E-value=20 Score=42.32 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=19.2
Q ss_pred cCcceEEEeeccCCCCcccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyT 159 (679)
++.|-||+..|.+|||||.+
T Consensus 166 ~~~nQsIiiSGESGAGKTe~ 185 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTEN 185 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEeCCCCCCchhh
Confidence 79999999999999999988
No 383
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=34.04 E-value=26 Score=37.15 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46788999999999998
No 384
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=33.92 E-value=12 Score=38.62 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=14.9
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...|.-.|++|||||.++
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 346666799999999998
No 385
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=33.83 E-value=12 Score=34.17 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|+-.|.+|||||...
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999765
No 386
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=33.82 E-value=16 Score=41.19 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=15.4
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
+..++..|..|||||+|+
T Consensus 204 ~~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp CSEEEEECCTTSCHHHHH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 356778999999999997
No 387
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.79 E-value=15 Score=43.13 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..++..|+.|||||+|+
T Consensus 376 ~~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTS 392 (802)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CCEEEECCCCCCHHHHH
Confidence 35678999999999997
No 388
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=33.77 E-value=11 Score=35.99 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=13.9
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.+.-.|++|||||.+|
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999988
No 389
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=33.76 E-value=20 Score=43.27 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=19.2
Q ss_pred cCcceEEEeeccCCCCcccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyT 159 (679)
++.|-||+..|.+|||||.+
T Consensus 169 ~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHH
T ss_pred cCCCeEEEEeCCCCCCcchH
Confidence 79999999999999999988
No 390
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.68 E-value=1.1e+02 Score=24.94 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 541 ETQLRKAAEEEVNNLKIQVAQWK-------RSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 541 ~~~~~~~~E~~~~~l~~~~~~~~-------~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
|+.++..+-..+..|+.-+..+. ..+....+=|..|+.+......++..+..++..|+.+|..+
T Consensus 10 Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 10 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455444444455544443321 11222233345555555555556666666666666666543
No 391
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=33.61 E-value=1.8e+02 Score=32.18 Aligned_cols=18 Identities=6% Similarity=0.023 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 005753 483 MESIKKLEERWKINQQKQ 500 (679)
Q Consensus 483 ~~~i~~le~~l~~~~~~~ 500 (679)
.+++..|.+++...+...
T Consensus 69 ~~~~~~ld~~~r~~~~~~ 86 (501)
T 1wle_A 69 LPGIISTWQELRQLREQI 86 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666444443
No 392
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=33.33 E-value=16 Score=42.97 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..++..|+.|||||+|+
T Consensus 372 ~~~lI~GppGTGKT~ti 388 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTS 388 (800)
T ss_dssp SEEEEECCTTSCHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 45678999999999997
No 393
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=33.31 E-value=22 Score=41.80 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=19.6
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
++.|-||+..|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 799999999999999999884
No 394
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=33.23 E-value=50 Score=22.87 Aligned_cols=26 Identities=4% Similarity=0.068 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQM 579 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~ 579 (679)
.|+++++++-.+...+..|+..+++.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 395
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=33.21 E-value=21 Score=42.98 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=19.3
Q ss_pred cCcceEEEeeccCCCCcccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyT 159 (679)
++.|-||+..|.+|||||.+
T Consensus 143 ~~~~QsIiisGESGAGKTe~ 162 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTEN 162 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHH
T ss_pred cCCCcEEEecCCCCCCchhh
Confidence 79999999999999999988
No 396
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=33.10 E-value=18 Score=43.64 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=17.5
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
|..+++|.+ ++..|+||||||.+
T Consensus 48 I~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHHH
Confidence 445567754 68899999999954
No 397
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=32.94 E-value=23 Score=41.62 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=19.9
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
++.|-||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 899999999999999999885
No 398
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=32.83 E-value=3.7e+02 Score=26.53 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 005753 421 KSLARRLDIQL 431 (679)
Q Consensus 421 ~~l~~~l~~e~ 431 (679)
+.|.++++..+
T Consensus 10 ~~l~~~~~~g~ 20 (301)
T 2efk_A 10 EVLERHTQWGL 20 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44445544444
No 399
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=32.80 E-value=26 Score=40.44 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=24.2
Q ss_pred ChHHHHHHhhHHHHHHHhcCcc------eEEEeeccCCCCccccc
Q 005753 122 SQKRVYQAVAKPVVESVLDGYN------GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 122 sQ~~Vy~~~~~plV~~~l~G~N------~tIfaYGqTgSGKTyTm 160 (679)
.|.++-+.+.. .+.....|.. +.++-||++|+|||++.
T Consensus 462 g~~~~~~~l~~-~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTE-AIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHH-HHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHH-HHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 34444444332 3344444543 57999999999999886
No 400
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=32.63 E-value=13 Score=34.26 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 401
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=32.62 E-value=13 Score=34.93 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999876
No 402
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=32.59 E-value=12 Score=36.06 Aligned_cols=17 Identities=53% Similarity=0.563 Sum_probs=14.1
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..+.-.|++|||||..+
T Consensus 31 ~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 35566999999999986
No 403
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.92 E-value=1.3e+02 Score=23.22 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 572 EIFKLRQMLEDEAHQKKKLEEEIALL 597 (679)
Q Consensus 572 ei~~l~k~l~~~~~~~~~~~~~i~~L 597 (679)
++....+++.....-|-+++.+|.+-
T Consensus 22 e~~~q~~eYq~LlniK~~Le~EIatY 47 (59)
T 1gk6_A 22 EVARLKKLVGDLLNVKMALDIEIATY 47 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333333333344444444433
No 404
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=31.85 E-value=13 Score=34.59 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.+.-.|++|||||.++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4667899999999887
No 405
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=31.62 E-value=13 Score=34.25 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999875
No 406
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=31.56 E-value=32 Score=39.42 Aligned_cols=47 Identities=26% Similarity=0.435 Sum_probs=34.6
Q ss_pred ceeeccccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCcccccc
Q 005753 110 TYEFDEVLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLG 161 (679)
Q Consensus 110 ~F~FD~VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm~ 161 (679)
.|....=|.|...|..-+..+ ++.+-.|... ....|.|||||||||.
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~l----~~~~~~~~~~-~~l~g~~gs~k~~~~a 50 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEKL----VKGIQEGKKH-QTLLGATGTGKTFTVS 50 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHHH----HHHHhcCCCc-EEEECcCCcHHHHHHH
Confidence 466666789999999887764 4555566532 3456999999999993
No 407
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=31.33 E-value=22 Score=43.52 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=23.2
Q ss_pred CChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCcccc
Q 005753 121 ASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 121 asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
..|......+ +.+.-.|...-++..|+||||||.+
T Consensus 606 ~~Q~~ai~~i----l~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 606 PDQAQAINAV----LSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHHHHH----HHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHHHHHH----HHHHhcCCcCcEEEECCCCCCHHHH
Confidence 3454444333 3344457766789999999999965
No 408
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=31.22 E-value=2.7e+02 Score=25.01 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 005753 480 KDYMESIKKLEERWK 494 (679)
Q Consensus 480 ~~~~~~i~~le~~l~ 494 (679)
.++...+..++.+|.
T Consensus 70 ~EL~~~l~sie~dLe 84 (130)
T 4dnd_A 70 NELRNGLRSIEWDLE 84 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 409
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=31.21 E-value=39 Score=34.55 Aligned_cols=16 Identities=50% Similarity=0.646 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|...|.+|+|||.++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999997
No 410
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.19 E-value=1.5e+02 Score=21.33 Aligned_cols=11 Identities=36% Similarity=0.350 Sum_probs=4.5
Q ss_pred chHHHHHHHHH
Q 005753 569 GNTEIFKLRQM 579 (679)
Q Consensus 569 ~~~ei~~l~k~ 579 (679)
+..+|..+++.
T Consensus 36 lekeianlrkk 46 (49)
T 3he5_A 36 LEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 411
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=31.17 E-value=15 Score=40.06 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=22.7
Q ss_pred cCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 117 LTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 117 F~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
|.+..-|.+.+..+ +.|.+ ++..|+||||||.+.
T Consensus 112 ~~l~~~Q~~ai~~~--------~~~~~--~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 112 IEPHWYQKDAVFEG--------LVNRR--RILNLPTSAGRSLIQ 145 (510)
T ss_dssp ECCCHHHHHHHHHH--------HHHSE--EEEECCSTTTHHHHH
T ss_pred CCCCHHHHHHHHHH--------HhcCC--cEEEeCCCCCHHHHH
Confidence 35555676665443 34444 477899999999986
No 412
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=31.12 E-value=16 Score=35.38 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=9.5
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999887
No 413
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=31.00 E-value=4e+02 Score=26.28 Aligned_cols=14 Identities=14% Similarity=0.453 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHH
Q 005753 419 DYKSLARRLDIQLD 432 (679)
Q Consensus 419 ~~~~l~~~l~~e~~ 432 (679)
.+..|..+++..+.
T Consensus 15 g~~~l~~r~~~g~~ 28 (305)
T 2efl_A 15 QFDNLEKHTQWGID 28 (305)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHH
Confidence 34556666655554
No 414
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.00 E-value=1.1e+02 Score=33.63 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQM---LEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~---l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
.++.++++++.+......+|.++++. .+....+.+.+.++|..|+.++.++
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333321 2223334444445555555544433
No 415
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=30.76 E-value=20 Score=41.87 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=18.2
Q ss_pred HHHHhcCcceEEEeeccCCCCccccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 445567876 567789999999874
No 416
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=30.63 E-value=71 Score=26.35 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 005753 549 EEEVNNLKIQVAQWKRSEASGNTEIFKL 576 (679)
Q Consensus 549 E~~~~~l~~~~~~~~~~~~~~~~ei~~l 576 (679)
+.....|+.+-..|+.+++.+..++..|
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333333333333
No 417
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.59 E-value=1.3e+02 Score=32.91 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 575 KLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 575 ~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
++..+.....++.+.++++...+++++.
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555555543
No 418
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.59 E-value=58 Score=22.66 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 572 EIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 572 ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
+....++.+++.+.+...++++|+.||
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 344445555555555566666666553
No 419
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=30.52 E-value=3.8e+02 Score=25.98 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=37.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 525 ASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQ 600 (679)
Q Consensus 525 ~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~ 600 (679)
...+.+|+.++..+..+..|=.+.+..+..++-++..-+.. |..|+-.+....-.....+..|+.|+.+
T Consensus 80 ~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~-------i~~l~~~v~~ld~~vt~~et~Isal~~D 148 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGE-------IASLQTNVSALDGRVTTAENNISALQAD 148 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeeccccc-------chhhhhhhhhhcccccccccchhhhhhh
Confidence 45566677777777776666666666666666655444333 3333333333333333444555555444
No 420
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=30.48 E-value=19 Score=33.97 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=15.8
Q ss_pred CcceEEEeeccCCCCccccc
Q 005753 141 GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 141 G~N~tIfaYGqTgSGKTyTm 160 (679)
.-...|.-.|.+|||||..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456778899999999775
No 421
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=30.48 E-value=35 Score=34.82 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=22.9
Q ss_pred HHHHHhhHHHHHHHh--cCcceEEEeeccCCCCccccc
Q 005753 125 RVYQAVAKPVVESVL--DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 125 ~Vy~~~~~plV~~~l--~G~N~tIfaYGqTgSGKTyTm 160 (679)
.+++.++.-+..... .+-...|.-.|.+|||||+..
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 355555544443222 244556778899999999876
No 422
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=30.46 E-value=26 Score=42.52 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=24.6
Q ss_pred HHHHhhHHHHHHHh-cCcceEEEeeccCCCCccccc
Q 005753 126 VYQAVAKPVVESVL-DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 126 Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKTyTm 160 (679)
||... .....+++ .+.|-||+.-|.+|||||.+.
T Consensus 127 IfaiA-~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 127 VFAIA-DKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HHHHH-HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHH-HHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 55433 23333333 799999999999999999883
No 423
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=30.38 E-value=13 Score=34.21 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5578999999999876
No 424
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=30.30 E-value=14 Score=35.15 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.3
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.+.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999887
No 425
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=30.26 E-value=22 Score=35.93 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=15.6
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..++.||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 68899999999999887
No 426
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.19 E-value=83 Score=21.71 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAAEEEVNNLKIQV 559 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~ 559 (679)
++.+|+.+++....+...+|.++..|++=+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455677777777777777777777776543
No 427
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=30.16 E-value=1.9e+02 Score=22.22 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=25.9
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 561 QWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALL 597 (679)
Q Consensus 561 ~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L 597 (679)
.++.+...+..+..++++-|++++..++.+|.-+.++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455567777888888888888888877766
No 428
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=30.16 E-value=15 Score=41.93 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=16.8
Q ss_pred cceEEEeeccCCCCccccc
Q 005753 142 YNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 142 ~N~tIfaYGqTgSGKTyTm 160 (679)
.++.++..|..|||||+||
T Consensus 14 ~~~~~lV~AgaGSGKT~~l 32 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVI 32 (673)
T ss_dssp CSSEEEECCCTTSCHHHHH
T ss_pred CCCCEEEEeCCCCChHHHH
Confidence 4677888999999999998
No 429
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=29.95 E-value=12 Score=41.59 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=17.1
Q ss_pred HHHHhcCcceEEEeeccCCCCcccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
++.+++|.++ +..++||||||.+
T Consensus 34 i~~il~g~d~--lv~apTGsGKTl~ 56 (523)
T 1oyw_A 34 IDTVLSGRDC--LVVMPTGGGKSLC 56 (523)
T ss_dssp HHHHHTTCCE--EEECSCHHHHHHH
T ss_pred HHHHHcCCCE--EEECCCCcHHHHH
Confidence 4455678764 5567999999986
No 430
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=29.88 E-value=20 Score=42.79 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=22.6
Q ss_pred ccCCCCChHHHHHHhhHHHHHHHhcCcceEEEeeccCCCCccccc
Q 005753 116 VLTEFASQKRVYQAVAKPVVESVLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 116 VF~~~asQ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
-+.+..-|.+++ ..++.|.| ++..++||||||.+.
T Consensus 246 ~~~~r~~Q~~ai--------~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 246 TKKARSYQIELA--------QPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp --CCCHHHHHHH--------HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred CCCCCHHHHHHH--------HHHHcCCC--EEEEeCCCchHHHHH
Confidence 344444465543 44567877 466789999999884
No 431
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=29.84 E-value=14 Score=37.96 Aligned_cols=17 Identities=47% Similarity=0.765 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|.-.|++|+|||+|+
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46667899999999998
No 432
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=29.83 E-value=2.2e+02 Score=22.85 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 554 NLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIA 595 (679)
Q Consensus 554 ~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~ 595 (679)
+|..++.+-+.+.+.++-.+-.+|-.|....+--++++++..
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~ 48 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNL 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555444444444444444443
No 433
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=29.76 E-value=12 Score=38.92 Aligned_cols=19 Identities=42% Similarity=0.601 Sum_probs=15.2
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|. .+.-.|+||||||.++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 555 4566799999999987
No 434
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.52 E-value=2.9e+02 Score=24.28 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 480 KDYMESIKKLEERWKINQQKQGSDRIMVRSEDDCSDVASNAKDSMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQV 559 (679)
Q Consensus 480 ~~~~~~i~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~ 559 (679)
+++++++...|.+|...++++...+...+. --++ --++.++..+..-..+|.++.+|+.++
T Consensus 25 eeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~---DPDe----------------vNK~tl~~R~~~Vs~lq~KiaeLKrqL 85 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQKVRDAEKQYEK---DPDE----------------LNKRTLTDREGVAVSIQAKIDELKRQL 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 005753 560 AQWKR 564 (679)
Q Consensus 560 ~~~~~ 564 (679)
.....
T Consensus 86 Ad~va 90 (113)
T 4fi5_A 86 ADRIA 90 (113)
T ss_dssp HHHHH
T ss_pred HHHHH
No 435
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=29.51 E-value=4.1e+02 Score=26.04 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 005753 590 LEEEIALLQSQL 601 (679)
Q Consensus 590 ~~~~i~~L~~~l 601 (679)
+.-.+..++.++
T Consensus 218 l~p~~e~~~~~l 229 (243)
T 2a01_A 218 LLPVLESFKVSF 229 (243)
T ss_dssp SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 344444444443
No 436
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.45 E-value=2.4e+02 Score=23.31 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=15.7
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHH
Q 005753 560 AQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 560 ~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
.++....-.+..||..+++.|+-+
T Consensus 59 q~LlnvK~~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 59 QELLDIKLALDMEIHAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCC
Confidence 344445555677888888888744
No 437
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=29.36 E-value=13 Score=35.09 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=14.3
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.++-||..|||||+.+
T Consensus 5 i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 5 LTVITGPMYSGKTTEL 20 (184)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999987
No 438
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=29.32 E-value=13 Score=39.30 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=14.8
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|.+. .-.|+||||||.++
T Consensus 174 ~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp TTCCE--EEEESSSSCHHHHH
T ss_pred cCCEE--EEECCCCCCHHHHH
Confidence 66654 44599999999987
No 439
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=29.26 E-value=19 Score=38.71 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.8
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688999999999883
No 440
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.08 E-value=1.5e+02 Score=24.70 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 541 ETQLRKAAEEEVNNLKIQVAQWK--------RSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 541 ~~~~~~~~E~~~~~l~~~~~~~~--------~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
|+.++..+-..+..|+.-+..+. ..+....+=|..|+.+......++..+..+...|+.+|.++
T Consensus 14 ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 14 ERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555444331 22222333445555555555555666666666666666544
No 441
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=29.06 E-value=18 Score=36.68 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=15.7
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..++.||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58999999999999887
No 442
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.97 E-value=98 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQML 580 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l 580 (679)
.++.+|+.....+..+...+...+..|+.++
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444333
No 443
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=28.90 E-value=2e+02 Score=23.31 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=14.9
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHH
Q 005753 559 VAQWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 559 ~~~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
+.++....-.+..||..+++.|+-+
T Consensus 35 Yq~LlniKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 35 YQELLDIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344445555667777777777644
No 444
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=28.68 E-value=17 Score=33.04 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
...-||++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3467999999999876
No 445
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=28.65 E-value=16 Score=33.57 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|+-.|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999764
No 446
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=28.59 E-value=3.1e+02 Score=24.33 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=10.6
Q ss_pred HHHHHHhhchHHHHHHHHHHHHH
Q 005753 561 QWKRSEASGNTEIFKLRQMLEDE 583 (679)
Q Consensus 561 ~~~~~~~~~~~ei~~l~k~l~~~ 583 (679)
+++..+..++.+|...++.+.+-
T Consensus 79 ~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 79 KYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555444443
No 447
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=28.52 E-value=15 Score=35.10 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=13.8
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.+.-.|++|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4567899999999997
No 448
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.47 E-value=2.4e+02 Score=30.26 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 572 EIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 572 ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
+..+++.+......+.+.++++...+++++.
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555543
No 449
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.42 E-value=2.5e+02 Score=23.06 Aligned_cols=37 Identities=5% Similarity=-0.054 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 569 GNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 569 ~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
+-+.+.+|--+-+..+.+..++...+.+++.++.+++
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555544443
No 450
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=28.38 E-value=16 Score=33.14 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.8
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999775
No 451
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=28.17 E-value=40 Score=36.80 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=16.1
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...|+..|.+|+|||+|.
T Consensus 100 p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 467888999999999998
No 452
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=28.15 E-value=18 Score=34.16 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.9
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|+-.|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999775
No 453
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.11 E-value=2.7e+02 Score=26.33 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHH
Q 005753 570 NTEIFKLRQMLEDE 583 (679)
Q Consensus 570 ~~ei~~l~k~l~~~ 583 (679)
.+.|.++.+++.+.
T Consensus 112 eakI~aL~~Ei~~L 125 (175)
T 3lay_A 112 TAKINAVAKEMESL 125 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 454
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=28.10 E-value=35 Score=36.24 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.1
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|.-..|+-+|..|+|||...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 676777899999999999875
No 455
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.08 E-value=1.3e+02 Score=23.27 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005753 546 KAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQM 579 (679)
Q Consensus 546 ~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~ 579 (679)
..+|.+...|..+..++..+...+..++..|+.+
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555443
No 456
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.00 E-value=97 Score=21.29 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 531 LTEVKKLLLKETQLRKAAEEEVNNLKIQV 559 (679)
Q Consensus 531 i~~l~~~l~~~~~~~~~~E~~~~~l~~~~ 559 (679)
+.+|+.+++....+...+|.++..|++=+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34666666666677777777777776543
No 457
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=27.83 E-value=21 Score=38.69 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.1
Q ss_pred EEEeeccCCCCcccc
Q 005753 145 TVMAYGQTGTGKTYT 159 (679)
Q Consensus 145 tIfaYGqTgSGKTyT 159 (679)
.++..|+||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 467889999999988
No 458
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=27.81 E-value=18 Score=36.00 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=12.8
Q ss_pred EEEeeccCCCCcccc
Q 005753 145 TVMAYGQTGTGKTYT 159 (679)
Q Consensus 145 tIfaYGqTgSGKTyT 159 (679)
.|+-.|.+|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 477899999999965
No 459
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=27.71 E-value=1.4e+02 Score=26.07 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=35.4
Q ss_pred HHHHhhchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhh
Q 005753 563 KRSEASGNTEIFKLRQMLEDEA-----HQKKKLEEEIALLQSQLLQISF 606 (679)
Q Consensus 563 ~~~~~~~~~ei~~l~k~l~~~~-----~~~~~~~~~i~~L~~~l~~~~~ 606 (679)
...++...+.|..|++.+.+.. .+.+.+.+.|..|+..|.++..
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~ 105 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRR 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557777888999999998764 4888999999999999876543
No 460
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.64 E-value=95 Score=24.38 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 005753 550 EEVNNLKIQVAQWKRSEASGNTEIFKLRQML 580 (679)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l 580 (679)
..+.+|+.++.+++.+...+..++..|+.++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777776666666666666655544
No 461
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=27.61 E-value=3.9e+02 Score=25.11 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005753 571 TEIFKLRQMLEDEAHQKKKL 590 (679)
Q Consensus 571 ~ei~~l~k~l~~~~~~~~~~ 590 (679)
..+...++.+.....+.+++
T Consensus 106 q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 106 KELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 462
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=27.51 E-value=17 Score=33.15 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|+-.|..|||||..+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35778899999999876
No 463
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=27.43 E-value=64 Score=34.35 Aligned_cols=87 Identities=14% Similarity=-0.023 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hh--hhhhHHHHhhh-----hcccchhhhhHhhhhchhhh---------------
Q 005753 579 MLEDEAHQKKKLEEEIALLQSQLL-QI--SFEADEVRCIQ-----NFFACCGLVLSLLFFPLFPL--------------- 635 (679)
Q Consensus 579 ~l~~~~~~~~~~~~~i~~L~~~l~-~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--------------- 635 (679)
+.++..++...++.++..|+.+|. .+ .-..|..-|+- .||.-|.+...-||=-..=.
T Consensus 88 ~~~~a~~e~~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~ 167 (371)
T 1zbt_A 88 LEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASA 167 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 344555667788888888887765 22 33333322221 24555556555554211100
Q ss_pred --hhhhhhhheeecccccccceeccccCcccc
Q 005753 636 --FFSCVSILFKISVPHATGLLLHNVGSRGVQ 665 (679)
Q Consensus 636 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (679)
.-.+-++.|.|+=+.|.|.|-+..|.--||
T Consensus 168 ~~~gG~ksv~~~I~G~~ayg~Lk~EsGvHRvq 199 (371)
T 1zbt_A 168 NGVGGLKEVVAMVSGQSVYSKLKYESGAHRVQ 199 (371)
T ss_dssp CSSSCEEEEEEEEESTTHHHHHGGGCEEEEEE
T ss_pred CCCCCceEEEEEEECccHHHHHhhccCeEEEE
Confidence 012346788888999999998887766665
No 464
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=27.38 E-value=19 Score=32.49 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999765
No 465
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=27.37 E-value=29 Score=38.51 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.9
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|.-.|.+|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 36778899999999998
No 466
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=27.30 E-value=1.8e+02 Score=22.41 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHH
Q 005753 558 QVAQWKRSEASGNTEIFKLRQMLE 581 (679)
Q Consensus 558 ~~~~~~~~~~~~~~ei~~l~k~l~ 581 (679)
++.++....-.+..||...++.|+
T Consensus 29 eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 29 LVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHc
Confidence 334445555556778888888776
No 467
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=27.24 E-value=15 Score=35.53 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 005753 146 VMAYGQTGTGKTYTL 160 (679)
Q Consensus 146 IfaYGqTgSGKTyTm 160 (679)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999887
No 468
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=27.17 E-value=4.9e+02 Score=27.38 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hh--hhhhHHHHhh-h----hcccchhhhhHhhhhchhhh---------------
Q 005753 579 MLEDEAHQKKKLEEEIALLQSQLL-QI--SFEADEVRCI-Q----NFFACCGLVLSLLFFPLFPL--------------- 635 (679)
Q Consensus 579 ~l~~~~~~~~~~~~~i~~L~~~l~-~~--~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~--------------- 635 (679)
+.++..++...++.++..|+.+|. .+ .-..|..-|+ + .||.-|.+....||=-..=.
T Consensus 70 ~~~~a~~e~~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~ 149 (354)
T 3d5a_X 70 LKEMAKAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHP 149 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 344555666777888888887654 22 2233322122 1 24555656555544111100
Q ss_pred --hhhhhhhheeecccccccceeccccCcccc
Q 005753 636 --FFSCVSILFKISVPHATGLLLHNVGSRGVQ 665 (679)
Q Consensus 636 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (679)
.-.+-++.|.|+=+.|.|.|-+..|..-||
T Consensus 150 ~~~gG~k~v~~~i~G~~ayg~Lk~E~GvHRvq 181 (354)
T 3d5a_X 150 TDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQ 181 (354)
T ss_dssp CTTSSEEEEEEEEESTTHHHHHGGGCSEEEEE
T ss_pred CCCCccEEEEEEEECccHHHHHHhccCeeEEE
Confidence 012346788899999999998888876666
No 469
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=27.14 E-value=19 Score=35.54 Aligned_cols=18 Identities=28% Similarity=0.150 Sum_probs=15.4
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...++-||..|+|||..+
T Consensus 12 G~i~litG~mGsGKTT~l 29 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL 29 (223)
T ss_dssp CEEEEEECSTTSCHHHHH
T ss_pred cEEEEEECCCCCcHHHHH
Confidence 457788999999999887
No 470
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=26.99 E-value=16 Score=35.21 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 005753 145 TVMAYGQTGTGKTYTL 160 (679)
Q Consensus 145 tIfaYGqTgSGKTyTm 160 (679)
-++-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3578999999999976
No 471
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=26.72 E-value=1.1e+02 Score=24.78 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 529 GELTEVKKLLLKETQLRKAAEEEVNNLKIQV 559 (679)
Q Consensus 529 ~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~ 559 (679)
.++.+|++++.+-..+..+.--.+++|-+.+
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEdL 33 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAEDL 33 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Confidence 4566888888888777777777777776644
No 472
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=26.72 E-value=1.9e+02 Score=24.17 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=28.2
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005753 559 VAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEAD 609 (679)
Q Consensus 559 ~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 609 (679)
++++...+++.+.-+.+.+.+.+..+.+.+.-++.+..+.+.+.+...+.+
T Consensus 26 le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~e 76 (86)
T 3nr7_A 26 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPN 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344455555555555555555555555555555666666666655544443
No 473
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=26.59 E-value=19 Score=36.07 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=17.6
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
.|+...|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 688999999999999999765
No 474
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=26.53 E-value=52 Score=35.72 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=15.2
Q ss_pred ceEEEeeccCCCCccccc
Q 005753 143 NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 143 N~tIfaYGqTgSGKTyTm 160 (679)
...|+..|.+|+|||+|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SEEEEECCCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356777799999999998
No 475
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=26.49 E-value=26 Score=42.43 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=16.7
Q ss_pred HHHHhcCcceEEEeeccCCCCccc
Q 005753 135 VESVLDGYNGTVMAYGQTGTGKTY 158 (679)
Q Consensus 135 V~~~l~G~N~tIfaYGqTgSGKTy 158 (679)
+..+++|.| +++.++||||||.
T Consensus 65 i~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 65 AKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHhCCC--EEEEcCCCCCHHH
Confidence 445567865 5788999999994
No 476
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=26.44 E-value=30 Score=36.06 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=22.5
Q ss_pred HHHHHHHhc-Cc--ceEEEeeccCCCCccccc
Q 005753 132 KPVVESVLD-GY--NGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 132 ~plV~~~l~-G~--N~tIfaYGqTgSGKTyTm 160 (679)
-+-++.++. |+ ...+.-||.+|||||..+
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 355788885 44 456789999999999876
No 477
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=26.44 E-value=22 Score=38.45 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.0
Q ss_pred HhcCcceEEEeeccCCCCccccc
Q 005753 138 VLDGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 138 ~l~G~N~tIfaYGqTgSGKTyTm 160 (679)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345655 578899999999883
No 478
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.22 E-value=81 Score=21.72 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 532 TEVKKLLLKETQLRKAAEEEVNNLKI 557 (679)
Q Consensus 532 ~~l~~~l~~~~~~~~~~E~~~~~l~~ 557 (679)
.+|+.+.+....+...+|+++..|++
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35566666666666666666666654
No 479
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=26.03 E-value=17 Score=41.09 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
.-++..|.||||||++|
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 45788999999999997
No 480
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.92 E-value=3.1e+02 Score=30.10 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=18.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLK 556 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~ 556 (679)
.+-++.++..+++.+++..+.++....+++..++
T Consensus 38 ~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 38 AIIEADKKWRRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555556555555555555555555443
No 481
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=25.66 E-value=19 Score=37.23 Aligned_cols=17 Identities=41% Similarity=0.516 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCccccc
Q 005753 144 GTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 144 ~tIfaYGqTgSGKTyTm 160 (679)
..|.-.|++|+|||.|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46788999999999998
No 482
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=25.49 E-value=24 Score=32.84 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=16.3
Q ss_pred cCcceEEEeeccCCCCccccc
Q 005753 140 DGYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 140 ~G~N~tIfaYGqTgSGKTyTm 160 (679)
.+..-.|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 345567889999999999764
No 483
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=25.39 E-value=19 Score=33.25 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=0.0
Q ss_pred EEeeccCCCCccc
Q 005753 146 VMAYGQTGTGKTY 158 (679)
Q Consensus 146 IfaYGqTgSGKTy 158 (679)
|+-.|..|||||+
T Consensus 8 I~l~G~~GsGKST 20 (193)
T 2rhm_A 8 IIVTGHPATGKTT 20 (193)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
No 484
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=25.38 E-value=3.1e+02 Score=23.14 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 523 SMASIVGELTEVKKLLLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLL 602 (679)
Q Consensus 523 ~~~~~~~~i~~l~~~l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~ 602 (679)
+.+....-+..=+-.-+......+.+++-++.++.+-.+-...+..+++.|...-+-|+.++-.+-.++...+..+++-+
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkA 84 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHH
Q ss_pred hhhhhhHHHH
Q 005753 603 QISFEADEVR 612 (679)
Q Consensus 603 ~~~~~~~~~~ 612 (679)
-+...-..++
T Consensus 85 iLELkLaE~~ 94 (101)
T 1d7m_A 85 ILELKLAEAI 94 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
No 485
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=25.38 E-value=20 Score=33.96 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=0.0
Q ss_pred EEeeccCCCCccc
Q 005753 146 VMAYGQTGTGKTY 158 (679)
Q Consensus 146 IfaYGqTgSGKTy 158 (679)
|+-.|++|||||.
T Consensus 15 i~l~G~sGsGKsT 27 (204)
T 2qor_A 15 LVVCGPSGVGKGT 27 (204)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
No 486
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=25.27 E-value=27 Score=31.52 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=0.0
Q ss_pred HhhHHHHHHHhc-CcceEEEeeccCCCCccccc
Q 005753 129 AVAKPVVESVLD-GYNGTVMAYGQTGTGKTYTL 160 (679)
Q Consensus 129 ~~~~plV~~~l~-G~N~tIfaYGqTgSGKTyTm 160 (679)
.....++..++. .....|...|.+|+|||..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 3 NIFSSMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred hHHHHHHHHhcCCCCccEEEEECCCCCCHHHHH
No 487
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=25.16 E-value=37 Score=34.97 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHhcCc-ceEEEeeccCCCCcccc
Q 005753 128 QAVAKPVVESVLDGY-NGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 128 ~~~~~plV~~~l~G~-N~tIfaYGqTgSGKTyT 159 (679)
+...+.+...+-.|. ...++-||+.|+|||.+
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~ 40 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHH
No 488
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=25.10 E-value=1.8e+02 Score=26.83 Aligned_cols=53 Identities=6% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHhhchHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005753 552 VNNLKIQVAQW-KRSEASGNTEIFKLR--------QMLEDEAHQKKKLEEEIALLQSQLLQI 604 (679)
Q Consensus 552 ~~~l~~~~~~~-~~~~~~~~~ei~~l~--------k~l~~~~~~~~~~~~~i~~L~~~l~~~ 604 (679)
+++|+++++.+ ..+.....+.|.+.+ -++...+++...++..|..|+..|..+
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A 72 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENL 72 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhC
No 489
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=25.08 E-value=19 Score=41.48 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=0.0
Q ss_pred EEeeccCCCCccc
Q 005753 146 VMAYGQTGTGKTY 158 (679)
Q Consensus 146 IfaYGqTgSGKTy 158 (679)
|+..|+||||||+
T Consensus 158 vlv~apTGSGKT~ 170 (677)
T 3rc3_A 158 IFHSGPTNSGKTY 170 (677)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEEcCCCCCHHH
No 490
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.07 E-value=60 Score=32.64 Aligned_cols=68 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 530 ELTEVKKLLLKETQLRKAA---EEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQ 598 (679)
Q Consensus 530 ~i~~l~~~l~~~~~~~~~~---E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~ 598 (679)
++..+++++...+...... ...... ..++.+++..+..+.+....|...|...+.+..++.+++..|.
T Consensus 25 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 25 ELEQLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp ---------------------------C-CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 491
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=25.06 E-value=17 Score=41.80 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHHHHH-HhcCcceEEEeeccCCCCcccc
Q 005753 132 KPVVES-VLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 132 ~plV~~-~l~G~N~tIfaYGqTgSGKTyT 159 (679)
..++.. +.+|.| ++..|+||||||..
T Consensus 29 ~~~i~~~~~~~~~--~lv~apTGsGKT~~ 55 (720)
T 2zj8_A 29 AEALKSGILEGKN--ALISIPTASGKTLI 55 (720)
T ss_dssp HHHHTTTGGGTCE--EEEECCGGGCHHHH
T ss_pred HHHHHHHhcCCCc--EEEEcCCccHHHHH
No 492
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=24.89 E-value=22 Score=32.68 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=0.0
Q ss_pred EEEeeccCCCCccc
Q 005753 145 TVMAYGQTGTGKTY 158 (679)
Q Consensus 145 tIfaYGqTgSGKTy 158 (679)
.|+-.|..|||||+
T Consensus 5 ~I~l~G~~GsGKsT 18 (196)
T 1tev_A 5 VVFVLGGPGAGKGT 18 (196)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
No 493
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=24.85 E-value=4.1e+02 Score=24.48 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005753 542 TQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFK-------------LRQMLEDEAHQKKKLEEEIALLQSQLLQIS 605 (679)
Q Consensus 542 ~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~-------------l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~ 605 (679)
....+.++..+..+..++.+++-+....-+++.. +...-.....++.+..+.+..|..++.++.
T Consensus 28 e~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 494
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=24.79 E-value=20 Score=33.31 Aligned_cols=13 Identities=46% Similarity=0.754 Sum_probs=0.0
Q ss_pred EEeeccCCCCccc
Q 005753 146 VMAYGQTGTGKTY 158 (679)
Q Consensus 146 IfaYGqTgSGKTy 158 (679)
|+-.|..|||||+
T Consensus 13 I~l~G~~GsGKST 25 (184)
T 1y63_A 13 ILITGTPGTGKTS 25 (184)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
No 495
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.75 E-value=3.3e+02 Score=23.36 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhhc
Q 005753 553 NNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALLQSQLLQISFEADEVRCIQNF 617 (679)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~~~~ 617 (679)
.+|-.++-++++.++.+.++-..+++.-..--.....++.++..|..+...+-++.+.-|....+
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~~~ 97 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQERA 97 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
No 496
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=24.70 E-value=23 Score=32.60 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=0.0
Q ss_pred EEEeeccCCCCccc
Q 005753 145 TVMAYGQTGTGKTY 158 (679)
Q Consensus 145 tIfaYGqTgSGKTy 158 (679)
.|+-.|..|||||+
T Consensus 6 ~I~l~G~~GsGKST 19 (186)
T 3cm0_A 6 AVIFLGPPGAGKGT 19 (186)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
No 497
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=24.68 E-value=26 Score=42.36 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHHHhcCcceEEEeeccCCCCcccc
Q 005753 132 KPVVESVLDGYNGTVMAYGQTGTGKTYT 159 (679)
Q Consensus 132 ~plV~~~l~G~N~tIfaYGqTgSGKTyT 159 (679)
...+..++.|.| ++..++||||||..
T Consensus 92 ~eai~~l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 92 DTAISCIDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp HHHHHHHHHTCE--EEEECCTTSCHHHH
T ss_pred HHHHHHHHcCCC--EEEECCCCCChHHH
No 498
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.68 E-value=2e+02 Score=20.67 Aligned_cols=45 Identities=24% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005753 538 LLKETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLED 582 (679)
Q Consensus 538 l~~~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~ 582 (679)
+.+....-+.+|.+-.-|+.+--..+.-..-+..+|..+++.+++
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
No 499
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=24.66 E-value=23 Score=34.42 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHhcCcceEEEeeccCCCCcc-ccc
Q 005753 134 VVESVLDGYNGTVMAYGQTGTGKT-YTL 160 (679)
Q Consensus 134 lV~~~l~G~N~tIfaYGqTgSGKT-yTm 160 (679)
+|.......--..|-||..||||| +-|
T Consensus 11 ~~~~~~~~~g~l~fiyG~MgsGKTt~Ll 38 (195)
T 1w4r_A 11 LVPRGSKTRGQIQVILGPMFSGKSTELM 38 (195)
T ss_dssp --------CCEEEEEEECTTSCHHHHHH
T ss_pred ccccCCCCceEEEEEECCCCCcHHHHHH
No 500
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=24.64 E-value=2.9e+02 Score=27.31 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005753 541 ETQLRKAAEEEVNNLKIQVAQWKRSEASGNTEIFKLRQMLEDEAHQKKKLEEEIALL 597 (679)
Q Consensus 541 ~~~~~~~~E~~~~~l~~~~~~~~~~~~~~~~ei~~l~k~l~~~~~~~~~~~~~i~~L 597 (679)
....+.-+...++.+++++..+...++..++|...++.+|+..+.+.+.+++.-.++
T Consensus 162 de~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 162 DSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Done!