BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005754
(679 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 114/237 (48%), Gaps = 20/237 (8%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISK 151
T LN I + GE +A+LGPSGSGKST+L +AG +G I + T+ K
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVTELPPK 73
Query: 152 --RTGFVTQDDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
G V Q+ LYPH+TV + + F L + PR K+ +A+ + + L
Sbjct: 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL------ 127
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-G 267
N + +SGG+++RV+IA ++ P +L+LDEP S LD+ + + L L + G
Sbjct: 128 ---NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG 184
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM---SYFESVGFSPSFPMN 321
T V H + M D++ V+ EG L G E Y GF + PMN
Sbjct: 185 ITTVYVTHD-QAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLGNPPMN 240
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 124/255 (48%), Gaps = 19/255 (7%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHISK 151
++G++ V GE +A+LGPSG GK+T L +LAG + G +L N+ P +
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK---YR 75
Query: 152 RTGFVTQDDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTII 210
G V Q+ LYPH+TV E + F R+ + K IA ++ + L +
Sbjct: 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ-- 133
Query: 211 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKT 269
+SGG+++RV++A ++ P +L+ DEP S LD+ + + + L Q G T
Sbjct: 134 -------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMN-PADFLLD 328
V H + M ++ V ++G+ + +G E +++ F SF N P +FL D
Sbjct: 187 SVYVTHD-QAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM-FVASFIGNPPTNFLRD 244
Query: 329 LANGVYHLDGVSERE 343
+ V + + +R+
Sbjct: 245 FSVSVENKQTILKRD 259
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 16/250 (6%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKH 148
T +N + + GE L +LGPSG GK+T L ++AG G +T ++
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 84
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
IS V Q ++PH+TV E + F P + K I + V L + E
Sbjct: 85 IS----MVFQSYAVWPHMTVYENIAF------PLKIKKFPKDEIDKRVRWAAELLQIEEL 134
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
+ N + +SGG+R+RV++A +++ P +L++DEP S LD+ + + + L Q+ K
Sbjct: 135 L--NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 192
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLD 328
+ M D++ V++ G+ L G +E SV F +F P +L+
Sbjct: 193 VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSV-FVATFIGAPEMNILE 251
Query: 329 LANGVYHLDG 338
++ G +L+G
Sbjct: 252 VSVGDGYLEG 261
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 16/250 (6%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKH 148
T +N + + GE L +LGPSG GK+T L ++AG G +T ++
Sbjct: 26 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 85
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
IS V Q ++PH+TV E + F P + K I + V L + E
Sbjct: 86 IS----MVFQSYAVWPHMTVYENIAF------PLKIKKFPKDEIDKRVRWAAELLQIEEL 135
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
+ N + +SGG+R+RV++A +++ P +L++DEP S LD+ + + + L Q+ K
Sbjct: 136 L--NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 193
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLD 328
+ M D++ V++ G+ L G +E SV F +F P +L+
Sbjct: 194 VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSV-FVATFIGAPEMNILE 252
Query: 329 LANGVYHLDG 338
++ G +L+G
Sbjct: 253 VSVGDGYLEG 262
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 18/214 (8%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHIS 150
L+ ++ V GE ILGP+G+GK+ L ++AG G L G +T+ + P KH
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKH-- 72
Query: 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTII 210
FV Q+ L+PH+ V++ L F +R+ + K A + K E+ +
Sbjct: 73 -DIAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDPKRVLDTARDL-------KIEHLLD 122
Query: 211 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTI 270
N +SGGE++RV++A ++ NP +L+LDEP S LD L L ++ K
Sbjct: 123 RNPLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180
Query: 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
V + + M D++ V+ +G+ + GK E
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 20/228 (8%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158
+ GE + +GPSG GKST+L ++AG + G G N+ P + + G V Q
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE---RGVGMVFQ 82
Query: 159 DDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG 217
LYPHL+V E + F L + + + +AE + L + +
Sbjct: 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KA 133
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQ 276
+SGG+R+RV+I ++ PS+ +LDEP S LD+ ++ + L +R G+T++ H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 277 PSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES---VGFSPSFPMN 321
+ DK++VL GR GK E Y GF S MN
Sbjct: 194 -QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 20/228 (8%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158
+ GE + +GPSG GKST+L ++AG + G G N+ P + + G V Q
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE---RGVGMVFQ 82
Query: 159 DDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG 217
LYPHL+V E + F L + + + +AE + L + +
Sbjct: 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KA 133
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQ 276
+SGG+R+RV+I ++ PS+ +LDEP S LD+ ++ + L +R G+T++ H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 277 PSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES---VGFSPSFPMN 321
+ DK++VL GR GK E Y GF S MN
Sbjct: 194 -QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 22/217 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNK---PTK 147
L+ + + GE ILGPSG+GK+T + ++AG G ++ +N K P +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
++ G V Q LYP+LT E + F P T K I + V + +
Sbjct: 81 --DRKIGMVFQTWALYPNLTAFENIAF------PLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS---TAAYRLVSTLGSLV 264
+ N F R +SGG+++RV++A ++ +PSLL+LDEP S LD+ +A LV + S
Sbjct: 133 VL--NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS-- 188
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
+ G T++ H P+ ++ + D+V VL +G+ + GK
Sbjct: 189 RLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGK 224
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 103/214 (48%), Gaps = 15/214 (7%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHI 149
+L GI + GE++ ++GPSGSGKST L L G + G L + +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 150 SKRTGFVTQDDILYPHLTVRE--TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
+ G V Q L+PH+TV TL + + PR EK AEA EL L K
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR-----EK---AEAKAMEL-LDKVGL 128
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
+++ +SGG+ +RV+IA + + P +++ DEPTS LD ++S + L G
Sbjct: 129 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
T+V H+ ++ D+VL + G + GK
Sbjct: 189 MTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGK 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 20/228 (8%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158
+ GE + +GPSG GKST+L ++AG + G G N+ P + + G V Q
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE---RGVGMVFQ 82
Query: 159 DDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG 217
LYPHL+V E + F L + + + +AE + L + +
Sbjct: 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KA 133
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQ 276
+SGG+R+RV+I ++ PS+ +LD+P S LD+ ++ + L +R G+T++ H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 277 PSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES---VGFSPSFPMN 321
+ DK++VL GR GK E Y GF S MN
Sbjct: 194 -QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 103/214 (48%), Gaps = 15/214 (7%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHI 149
+L GI + GE++ ++GPSGSGKST L L G + G L + +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 150 SKRTGFVTQDDILYPHLTVRE--TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
+ G V Q L+PH+TV TL + + PR EK AEA EL L K
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR-----EK---AEAKAMEL-LDKVGL 149
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
+++ +SGG+ +RV+IA + + P +++ DEPTS LD ++S + L G
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
T+V H+ ++ D+VL + G + GK
Sbjct: 210 MTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGK 242
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 111/217 (51%), Gaps = 22/217 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNK---PTK 147
L+ + + GE ILGPSG+GK+T + ++AG G ++ +N K P +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
++ G V Q LYP+LT E + F P T K I + V + +
Sbjct: 81 --DRKIGMVFQTWALYPNLTAFENIAF------PLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS---TAAYRLVSTLGSLV 264
+ N F R +SG +++RV++A ++ +PSLL+LDEP S LD+ +A LV + S
Sbjct: 133 VL--NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS-- 188
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
+ G T++ H P+ ++ + D+V VL +G+ + GK
Sbjct: 189 RLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGK 224
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 111/239 (46%), Gaps = 24/239 (10%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHI-----SKRT 153
V GE + +LGPSG GK+T L ++AG +G G L + P K I +
Sbjct: 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD--PEKGIFVPPKDRDI 83
Query: 154 GFVTQDDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212
V Q LYPH+TV + + F L ++PR + +AE LGLT+ + N
Sbjct: 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL----LGLTE-----LLN 134
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTIV 271
R +SGG+R+RV++ ++ P + ++DEP S LD+ R+ + L L Q G T +
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 272 TSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES---VGFSPSFPMNPADFLL 327
H M D++ V++ G G E + GF S PMN D ++
Sbjct: 195 YVTHD-QVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPMNFLDAIV 252
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 119/214 (55%), Gaps = 17/214 (7%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFV 156
+ G + A++GPSGSGKST+L++L RL+ +GTI + + + + + G V
Sbjct: 367 IPSGSVTALVGPSGSGKSTVLSLLL-RLYDPA--SGTISLDGHDIRQLNPVWLRSKIGTV 423
Query: 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE---AVMAELGLTKCENTIIGNS 213
+Q+ IL+ ++ E + + + P +++ +E +AE AV + NT++G
Sbjct: 424 SQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTS 273
+ +SGG+++R++IA +L NP +L+LDE TS LD+ Y + L L+ G+T++
Sbjct: 481 GVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVI 538
Query: 274 MHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
H+ S+ + + V VL +G+ +GK E +S
Sbjct: 539 AHRLST--IKNANMVAVLDQGKITEYGKHEELLS 570
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 16/202 (7%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLA--GRLHQGHGLTGTILTNN---NKPTKHISKRTGF 155
+ GE ++I+GPSGSGKSTMLN++ + +G I TN+ ++ TK + GF
Sbjct: 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGF 87
Query: 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKE--KTSIAEAVMAELGLTKCENTIIGNS 213
V Q L P LT E + + + +S +E K ++ MAEL N
Sbjct: 88 VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL------EERFANH 141
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVT 272
+SGG+++RV+IA + NP +++ D+PT LDS +++ L L + GKT+V
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201
Query: 273 SMHQPSSRVYQMFDKVLVLSEG 294
H + V + ++++ L +G
Sbjct: 202 VTHDIN--VARFGERIIYLKDG 221
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 21/216 (9%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTIL--TNN 142
I+ IL GI+ V GE ++I+G SGSGKST+L +L G L G + TN
Sbjct: 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNE 73
Query: 143 NKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ + +++ GFV Q L P LT E V +L++ + KE E +++ELGL
Sbjct: 74 KELSLLRNRKLGFVFQFHYLIPELTALEN-VIVPMLKMGK--PKKEAKERGEYLLSELGL 130
Query: 203 TKCENTIIGNSFIRG---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
G+ R +SGGE++RV+IA + P LL DEPT LDS R++
Sbjct: 131 --------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ + G +IV H+ + ++ + L + +G+
Sbjct: 183 FLKINEGGTSIVMVTHE--RELAELTHRTLEMKDGK 216
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 118/214 (55%), Gaps = 17/214 (7%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFV 156
+ G + A++GPSGSGKST+L++L RL+ +GTI + + + + + G V
Sbjct: 398 IPSGSVTALVGPSGSGKSTVLSLLL-RLYDPA--SGTISLDGHDIRQLNPVWLRSKIGTV 454
Query: 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE---AVMAELGLTKCENTIIGNS 213
+Q+ IL+ ++ E + + + P +++ +E +AE AV + NT++G
Sbjct: 455 SQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 511
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTS 273
+ +SGG+++R++IA +L NP +L+LDE TS LD+ Y + L L+ G+T++
Sbjct: 512 GVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVI 569
Query: 274 MHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
H S+ + + V VL +G+ +GK E +S
Sbjct: 570 AHHLST--IKNANMVAVLDQGKITEYGKHEELLS 601
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 25/222 (11%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS-- 150
IL I+ P I+A GPSG GKST+ ++L R +Q T +T + +P +IS
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQP---TAGEITIDGQPIDNISLE 72
Query: 151 ---KRTGFVTQDDILYPHLTVRETLVFC-----SLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ GFV+QD + T+RE L + + L + L S E + +L
Sbjct: 73 NWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL-- 129
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
NT +G ++ ISGG+R+R++IA L NP +L+LDE T+ LDS + + L S
Sbjct: 130 ----NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
L+ +G+T + H+ S+ V DK+ + +G+ GK +E
Sbjct: 185 LM-KGRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGKHNE 223
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 28/291 (9%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHISK 151
+ G++ + GE++ +LGPSGSGK+T+L ++AG R +G G + P K +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---R 87
Query: 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG 211
G V Q+ L+ H+TV + + F LR R + + E L + E+
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDARVREL----LRFMRLES--YA 139
Query: 212 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV--QRGKT 269
N F +SGG+++RV++A + P +L+ DEP + +D T R + T V + G T
Sbjct: 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID-TQIRRELRTFVRQVHDEMGVT 198
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVG--FSPSFPMNPADFLL 327
V H ++ D+VLVL EG FG E +E G F SF +
Sbjct: 199 SVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEV---YEKPGTLFVASFIGESNVWTR 254
Query: 328 DLANGVYHLDGVSEREKPNVKSSIVASYNTLLAPKVRAACMEATTLPRREA 378
+ NG + G + P V S + +A VR +E REA
Sbjct: 255 AVQNGRIEVAGAALPVDPAV------SEGSEVAVVVRPKDVELQPASEREA 299
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 106/209 (50%), Gaps = 16/209 (7%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLA--GRLHQGHGLTGTILTNN---NKPTKH 148
L + + GE ++I+GPSGSGKSTMLN++ + +G I TN+ ++ TK
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKE--KTSIAEAVMAELGLTKCE 206
+ GFV Q L P LT E + + + +S +E K ++ MAEL
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL------ 134
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
N +SGG+++RV+IA + NP +++ D+PT LDS +++ L L +
Sbjct: 135 EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194
Query: 267 -GKTIVTSMHQPSSRVYQMFDKVLVLSEG 294
GKT+V H + V + ++++ L +G
Sbjct: 195 DGKTVVVVTHDIN--VARFGERIIYLKDG 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 22/229 (9%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GR-LHQGHGLTGTILTNNN 143
IL+ I + GE++ I+G SGSGKST+ ++ G+ L GH L L + N
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA---LADPN 73
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ ++ G V QD++L + + + + + + K + A ++EL
Sbjct: 74 ----WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISEL--R 126
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ NTI+G G+SGG+R+R++IA ++ NP +LI DE TS LD + + ++ + +
Sbjct: 127 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312
+G+T++ H+ S+ + D+++V+ +G+ + GK E +S ES+
Sbjct: 186 C-KGRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 22/229 (9%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GR-LHQGHGLTGTILTNNN 143
IL+ I + GE++ I+G SGSGKST+ ++ G+ L GH L L + N
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA---LADPN 79
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ ++ G V QD++L + + + + + + K + A ++EL
Sbjct: 80 ----WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISEL--R 132
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ NTI+G G+SGG+R+R++IA ++ NP +LI DE TS LD + + ++ + +
Sbjct: 133 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312
+G+T++ H+ S+ + D+++V+ +G+ + GK E +S ES+
Sbjct: 192 C-KGRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTIL--TNNN 143
Q +LN I+ + PGEIL I+G SG GK+T+L LAG G L+G + N N
Sbjct: 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN 74
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
P + +R G++ Q+ +L+PHLTV + + L + + +E+ I EA++ G++
Sbjct: 75 LPVR--ERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQRI-EAMLELTGIS 129
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL-GS 262
+ + + +SGG+++R ++A + +P L++LDEP S LD ++ + +
Sbjct: 130 E-----LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAA 184
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297
L GK+ V H Q D++ V+ +GR L
Sbjct: 185 LRANGKSAVFVSHD-REEALQYADRIAVMKQGRIL 218
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 22/229 (9%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GR-LHQGHGLTGTILTNNN 143
IL+ I + GE++ I+G SGSGKST+ ++ G+ L GH L L + N
Sbjct: 19 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA---LADPN 75
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ ++ G V QD++L + + + + + + K + A ++EL
Sbjct: 76 ----WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISEL--R 128
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ NTI+G G+SGG+R+R++IA ++ NP +LI DE TS LD + + ++ + +
Sbjct: 129 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 187
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312
+G+T++ H+ S+ + D+++V+ +G+ + GK E +S ES+
Sbjct: 188 C-KGRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 121/229 (52%), Gaps = 22/229 (9%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GR-LHQGHGLTGTILTNNN 143
IL+ I + GE++ I+G +GSGKST+ ++ G+ L GH L L + N
Sbjct: 19 VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLA---LADPN 75
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ ++ G V QD++L + + + + + + K + A ++EL
Sbjct: 76 ----WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISEL--R 128
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ NTI+G G+SGG+R+R++IA ++ NP +LI DE TS LD + + ++ + +
Sbjct: 129 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 187
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312
+G+T++ H+ S+ + D+++V+ +G+ + GK E +S ES+
Sbjct: 188 C-KGRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 121/229 (52%), Gaps = 22/229 (9%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GR-LHQGHGLTGTILTNNN 143
IL+ I + GE++ I+G SGSGKST+ ++ G+ L GH L L + N
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA---LADPN 79
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ ++ G V QD++L + + + + + + K + A ++EL
Sbjct: 80 ----WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISEL--R 132
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ NTI+G G+SGG+R+R++IA ++ NP +LI D+ TS LD + + ++ + +
Sbjct: 133 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKI 191
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312
+G+T++ H+ S+ + D+++V+ +G+ + GK E +S ES+
Sbjct: 192 C-KGRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK--- 144
++++ IL G++ V PGE+ AI+GP+GSGKST+ LAGR + + +TG + K
Sbjct: 11 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLL 68
Query: 145 ---PTKHISKRTGFVTQDDILYPHLTVRETL-VFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
P + Q + P ++ + L + +R R T ++ + + ++
Sbjct: 69 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 128
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
L K ++ S G SGGE+KR I ++ P L ILDE SGLD A + +
Sbjct: 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 188
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
SL ++ + H Y D V VL +GR + G
Sbjct: 189 NSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK--- 144
++++ IL G++ V PGE+ AI+GP+GSGKST+ LAGR + + +TG + K
Sbjct: 30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLL 87
Query: 145 ---PTKHISKRTGFVTQDDILYPHLTVRETL-VFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
P + Q + P ++ + L + +R R T ++ + + ++
Sbjct: 88 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 147
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
L K ++ S G SGGE+KR I ++ P L ILDE SGLD A + +
Sbjct: 148 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
SL ++ + H Y D V VL +GR + G
Sbjct: 208 NSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 12/207 (5%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLA--GRLHQGHGLTGTILTNN---NKPTKH 148
L + + GE ++I GPSGSGKST LN++ + +G I TN+ ++ TK
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+ GFV Q L P LT E + + + S +E+ A + L +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEER--- 137
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-G 267
N +SGG+++RV+IA + NP +++ DEPT LDS ++ L L + G
Sbjct: 138 -FANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEG 294
KT+V H + V + ++++ L +G
Sbjct: 197 KTVVVVTHDIN--VARFGERIIYLKDG 221
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 22/229 (9%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GR-LHQGHGLTGTILTNNN 143
IL+ I + GE++ I+G SGSGKST+ ++ G+ L GH L L + N
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA---LADPN 73
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ ++ G V QD++L + + + + + + K + A ++EL
Sbjct: 74 ----WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISEL--R 126
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ NTI+G G+SGG+R+R++IA ++ NP +LI DE TS LD + + ++ + +
Sbjct: 127 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312
+G+T++ + S+ + D+++V+ +G+ + GK E +S ES+
Sbjct: 186 C-KGRTVIIIAARLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 22/229 (9%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GR-LHQGHGLTGTILTNNN 143
IL+ I + GE++ I+G SGSGKST+ ++ G+ L GH L L + N
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA---LADPN 79
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ ++ G V QD++L + + + + + + K + A ++EL
Sbjct: 80 ----WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISEL--R 132
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ NTI+G G+SGG+R+R++IA ++ NP +LI DE TS LD + + ++ + +
Sbjct: 133 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312
+G+T++ + S+ + D+++V+ +G+ + GK E +S ES+
Sbjct: 192 C-KGRTVIIIAARLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 24/228 (10%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP--- 145
E IL I + GE +A +G SG GKST++N++ R + +G IL + +
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYDV--TSGQILIDGHNIKDF 408
Query: 146 -TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE----- 199
T + + G V QD+IL+ TV+E ++ L R +T E+ + A MA
Sbjct: 409 LTGSLRNQIGLVQQDNILFSD-TVKENIL------LGRPTATDEEV-VEAAKMANAHDFI 460
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
+ L + +T +G ++ +SGG+++R+SIA L NP +LILDE TS LD + +
Sbjct: 461 MNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L L + T++ + H+ S+ + DK++V+ G + G E ++
Sbjct: 520 LDVLSKDRTTLIVA-HRLSTITHA--DKIVVIENGHIVETGTHRELIA 564
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 30/245 (12%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN---KPTKH 148
T + ++ + GE L +LGPSG GK+T L +AG G I +N P K
Sbjct: 20 TAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRG---QIYIEDNLVADPEKG 76
Query: 149 I-----SKRTGFVTQDDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ + V Q LYPH TV + + F L ++P+ K +AE LGL
Sbjct: 77 VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEX----LGL 132
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
T+ + N R +SGG+R+RV++ ++ P + + DEP S LD+ + + L
Sbjct: 133 TE-----LLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKK 187
Query: 263 LV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV-----GFSP 316
L Q G T + H D++ V ++G G E Y++ V GF
Sbjct: 188 LQRQLGVTTIYVTHD-QVEAXTXGDRIAVXNKGELQQVGTPDEV--YYKPVNTFVAGFIG 244
Query: 317 SFPMN 321
S P N
Sbjct: 245 SPPXN 249
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 19/231 (8%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
E+ L ++ +++ GE L + G +GSGKST+L ++AG + G + K I
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG--DVLYDGERKKGYEI 76
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSL-LRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+ G Q YP VF + + ++ + + M +GL
Sbjct: 77 RRNIGIAFQ----YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD----- 127
Query: 209 IIGNSFIRGI----SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+SF + SGGE++RV+IA ++ P +LILDEP GLD L+ +
Sbjct: 128 --FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFS 315
GKT++ H + V D+V+VL +G+ ++ G E + ++ F+
Sbjct: 186 TLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFT 235
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 118/230 (51%), Gaps = 18/230 (7%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN--NNKPT 146
+++ +L IT + PG+ +A++GP+GSGK+T++N+L R + G IL + + +
Sbjct: 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVD--RGQILVDGIDIRKI 422
Query: 147 KHISKRT--GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
K S R+ G V QD IL+ TV+E L + + + K + ++ + L
Sbjct: 423 KRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLP-EG 480
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
E + N +S G+R+ ++I L NP +LILDE TS +D+ + + + L+
Sbjct: 481 YETVLTDNG--EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS----YFE 310
+ GKT + H+ ++ + D ++VL +G + GK E + Y+E
Sbjct: 539 E-GKTSIIIAHRLNT--IKNADLIIVLRDGEIVEMGKHDELIQKRGFYYE 585
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 19/231 (8%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
E+ L ++ +++ GE L + G +GSGKST+L ++AG + G + K I
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG--DVLYDGERKKGYEI 78
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSL-LRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+ G Q YP VF + + ++ + + M +GL
Sbjct: 79 RRNIGIAFQ----YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD----- 129
Query: 209 IIGNSFIRGI----SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+SF + SGGE++RV+IA ++ P +LILDEP GLD L+ +
Sbjct: 130 --FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 187
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFS 315
GKT++ H + V D+V+VL +G+ ++ G E + ++ F+
Sbjct: 188 TLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFT 237
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 106/248 (42%), Gaps = 36/248 (14%)
Query: 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN-- 143
A I TIL G+ +V GE+ A++GP+G+GKST+ +LAG +L N
Sbjct: 11 ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70
Query: 144 --KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE---AVMA 198
P + K Q + P +T+ + LRL + +AE V
Sbjct: 71 ELSPDERARKGLFLAFQYPVEVPGVTI------ANFLRLALQAKLGREVGVAEFWTKVKK 124
Query: 199 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
L L + + + G SGGE+KR I +++ P+ +LDE SGLD A
Sbjct: 125 ALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDAL----- 179
Query: 259 TLGSLVQRGKTIVTSMHQPS---------SRV--YQMFDKVLVLSEGRCLYFGKGSEAMS 307
+V RG V +M P+ R+ Y DKV V+ +GR + G G E
Sbjct: 180 ---KVVARG---VNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG-GPELAL 232
Query: 308 YFESVGFS 315
E+ G+
Sbjct: 233 ELEAKGYE 240
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 26/226 (11%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG-LTGTILTNNNKPTKHISK 151
+L+G+ V PG ++A+LG +GSGKST++N++ + G + L K +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG 211
V Q+ +L+ T++E L + R +T ++ I EA + + + II
Sbjct: 418 HISAVPQETVLFSG-TIKENL------KWGREDATDDE--IVEAA----KIAQIHDFIIS 464
Query: 212 -----NSFI----RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+S + R SGG+++R+SIA ++ P +LILD+ TS +D R++ L
Sbjct: 465 LPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308
+ T + + P++ + DK+LVL EG+ FG E + +
Sbjct: 525 YTKGCTTFIITQKIPTA---LLADKILVLHEGKVAGFGTHKELLEH 567
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 113/228 (49%), Gaps = 19/228 (8%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK 147
+Q++ ++N ++ ++ GE++AI+GP+G+GKST+L +L G L HG + N N
Sbjct: 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP 80
Query: 148 HISKRTGFVTQD--DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
RT V + ++ +P +V E + + R P ++++ ++ + VMA+ T C
Sbjct: 81 KALARTRAVMRQYSELAFP-FSVSEVI---QMGRAPYG-GSQDRQAL-QQVMAQ---TDC 131
Query: 206 ENTIIGNSFIRGISGGERKRVSIAH------EMLINPSLLILDEPTSGLDSTAAYRLVST 259
+ R +SGGE++RV +A + P L LDEPTS LD +
Sbjct: 132 --LALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL 189
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L L ++ V + + D++++L++G+ + G E ++
Sbjct: 190 LRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 109 ILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFVTQDDILYPH 165
+LGP+G+GKS L ++AG + G L G +T P + GFV QD L+PH
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT----PLPPERRGIGFVPQDYALFPH 84
Query: 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR 225
L+V + + R + E+ + +LG+ + +SGGER+R
Sbjct: 85 LSVYRNIAYGL-----RNVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQR 134
Query: 226 VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTI-VTSMHQPSSRVYQM 284
V++A ++I P LL+LDEP S +D L+ L VQR + + + +
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAML 193
Query: 285 FDKVLVLSEGRCLYFGKGSEAMS 307
D+V V+ GR + GK E S
Sbjct: 194 ADEVAVMLNGRIVEKGKLKELFS 216
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 117/228 (51%), Gaps = 23/228 (10%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ---------GHGLTGTIL 139
+E+ L+ ++ + G+ +A++G SGSGKST+ N+ R + GH + L
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFYDVDSGSICLDGHDVRDYKL 412
Query: 140 TNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE 199
TN + + V+Q+ L+ T+ + + + R ++ A A+
Sbjct: 413 TN-------LRRHFALVSQNVHLFND-TIANNIAYAAEGEYTRE-QIEQAARQAHAMEFI 463
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
+ + +T+IG + +SGG+R+RV+IA +L + +LILDE TS LD+ + + +
Sbjct: 464 ENMPQGLDTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAA 522
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L L Q+ KT++ H+ S+ + D++LV+ EG + G+ ++ ++
Sbjct: 523 LDEL-QKNKTVLVIAHRLST--IEQADEILVVDEGEIIERGRHADLLA 567
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 117/217 (53%), Gaps = 18/217 (8%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS 150
R L ++ V PG+ LA++GPSG+GKST+L +L + + ++ + + + ++
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL----FRFYDISSGCIRIDGQDISQVT 122
Query: 151 KRT-----GFVTQDDILYPHLTVRETLVFCSLLRLPRTL-STKEKTSIAEAVMAELGLTK 204
+ + G V QD +L+ + T+ + + + + + + + I +A+MA +
Sbjct: 123 QASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMA---FPE 178
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
T +G ++ +SGGE++RV+IA +L P +++LDE TS LD++ + ++L +
Sbjct: 179 GYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
TIV + H+ S+ V D++LV+ +G + G+
Sbjct: 238 ANRTTIVVA-HRLSTVVNA--DQILVIKDGCIVERGR 271
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 16/224 (7%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK----P 145
E IL G++ V PG+ LA++GPSG GKST++ +L R + G G I + ++
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE-RFYDTLG--GEIFIDGSEIKTLN 1147
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+H + V+Q+ L+ ++ E +++ +E +A L +
Sbjct: 1148 PEHTRSQIAIVSQEPTLF-DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEG 1206
Query: 206 ENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
T +G+ RG +SGG+++R++IA ++ NP +L+LDE TS LD T + ++V
Sbjct: 1207 FETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEKVVQEALDR 1262
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ G+T + H+ ++ + D + V+S G + G ++ MS
Sbjct: 1263 AREGRTCIVIAHRLNTVMNA--DCIAVVSNGTIIEKGTHTQLMS 1304
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 16/193 (8%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NNKPTKH 148
IL G+ V+ G+ +A++G SG GKST++++L L L G I + + +
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLL---LRYYDVLKGKITIDGVDVRDINLEF 489
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+ K V+Q+ L+ + T+ E + + K + AE + L NT
Sbjct: 490 LRKNVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTL--PNGYNT 546
Query: 209 IIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
++G+ RG +SGG+++R++IA ++ NP +L+LDE TS LD+ + + L +
Sbjct: 547 LVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK-AAK 602
Query: 267 GKTIVTSMHQPSS 279
G+T + H+ S+
Sbjct: 603 GRTTIIIAHRLST 615
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 19/213 (8%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH-ISKR 152
L I + G A++G +GSGKST+ +L R + G N NK ++ I
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKNVNKYNRNSIRSI 94
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-----GLTKCEN 207
G V QD IL+ T++ +++ L ++ I A+L L K +
Sbjct: 95 IGIVPQDTILFNE-TIKYNILYGKL-------DATDEEVIKATKSAQLYDFIEALPKKWD 146
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
TI+GN ++ +SGGER+R++IA +L +P ++I DE TS LDS Y + L ++
Sbjct: 147 TIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RKN 204
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
+T++ H+ S+ + +++L++G+ + G
Sbjct: 205 RTLIIIAHRLST--ISSAESIILLNKGKIVEKG 235
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 9/232 (3%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
+I ++ IL GI+ + GEI ++GP+G+GK+T L +++ + G+ N +
Sbjct: 24 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP 83
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
+ K ++ ++ Y ++ E L F + + +E A + A LG K +
Sbjct: 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI-AGLG-EKIK 141
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+ + +++ +G+ +++ IA +++NP L ILDEPTSGLD A + L Q
Sbjct: 142 DRV--STYSKGMV----RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSF 318
G TI+ S H V + D++ ++ G + G E +++ F
Sbjct: 196 GLTILVSSHN-MLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVF 246
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 26/230 (11%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH----- 148
L GI + GE+ AILG +G GKST+ G L +G IL +N KP +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDN-KPIDYSRKGI 79
Query: 149 --ISKRTGFVTQD-DILYPHLTVRETLVFCSL-LRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ + G V QD D +V + + F ++ ++LP + I + V L T
Sbjct: 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP-------EDEIRKRVDNALKRTG 132
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
E+ + + +S G++KRV+IA +++ P +LILDEPT+GLD ++ L +
Sbjct: 133 IEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 265 QR-GKTIVTSMHQPSSRVYQMF-DKVLVLSEGRCLYFGKGSEAMSYFESV 312
+ G TI+ + H + ++ D V V+ EGR + G E + E +
Sbjct: 191 KELGITIIIATHDID--IVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVI 238
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + GE+LAI G +GSGK+++L ++ G L G+ KH S R
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI-----------IKH-SGR 100
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC---ENTI 209
F +Q + P T++E ++F + S+ +A + +TK +NT+
Sbjct: 101 VSFCSQFSWIMPG-TIKENIIF------GVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+G + +SGG+R R+S+A + + L +LD P LD ++ + + KT
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 270 --IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+VTS + + DK+L+L +G ++G SE S
Sbjct: 213 RILVTSKMEHLRKA----DKILILHQGSSYFYGTFSELQS 248
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + GE+LAI G +GSGK+++L ++ G L G+ KH S R
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI-----------IKH-SGR 100
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK---CENTI 209
F +Q + P T++E ++F + S+ +A + +TK +NT+
Sbjct: 101 VSFCSQFSWIMPG-TIKENIIF------GVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+G + +SGG+R R+S+A + + L +LD P LD ++ + + KT
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 270 --IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+VTS + + DK+L+L +G ++G SE S
Sbjct: 213 RILVTSKMEHLRKA----DKILILHQGSSYFYGTFSELQS 248
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 33/222 (14%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + GE+LAI G +GSGK+++L ++ G L G+ KH S R
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI-----------IKH-SGR 100
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKE--KTSIAEAVMAELGLTK---CEN 207
F +Q + P T++E ++ R +S E S+ +A + +TK +N
Sbjct: 101 VSFCSQFSWIMPG-TIKENII--------RGVSYDEYRYKSVVKACQLQQDITKFAEQDN 151
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
T++G + +SGG+R R+S+A + + L +LD P LD ++ + +
Sbjct: 152 TVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 268 KT--IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
KT +VTS + + DK+L+L +G ++G SE S
Sbjct: 211 KTRILVTSKMEHLRKA----DKILILHQGSSYFYGTFSELQS 248
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 112/215 (52%), Gaps = 18/215 (8%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK----PTKH 148
+L G++ V G+ LA++G SG GKST++ +L R + + G++ + + +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDP--MAGSVFLDGKEIKQLNVQW 1104
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA-EAVMAEL--GLTKC 205
+ + G V+Q+ IL+ ++ E + + R +S +E A EA + + L
Sbjct: 1105 LRAQLGIVSQEPILF-DCSIAENIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDK 1160
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
NT +G+ + +SGG+++R++IA ++ P +L+LDE TS LD T + ++V +
Sbjct: 1161 YNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKAR 1218
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
G+T + H+ S+ Q D ++V+ G+ G
Sbjct: 1219 EGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHG 1251
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 114/218 (52%), Gaps = 24/218 (11%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK---- 144
+E IL G+ V G+ +A++G SG GKST + ++ RL+ L G + +
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDP--LDGMVSIDGQDIRTI 457
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE--LGL 202
+++ + G V+Q+ +L+ T+ E + + R T+ EK ++ EA + + L
Sbjct: 458 NVRYLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEK-AVKEANAYDFIMKL 512
Query: 203 TKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
+T++G RG +SGG+++R++IA ++ NP +L+LDE TS LD+ + + + L
Sbjct: 513 PHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL 569
Query: 261 GSLVQRGKTIVTSMHQPS----SRVYQMFDKVLVLSEG 294
+ G+T + H+ S + V FD +++ +G
Sbjct: 570 DK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 112/215 (52%), Gaps = 18/215 (8%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK----PTKH 148
+L G++ V G+ LA++G SG GKST++ +L R + + G++ + + +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDP--MAGSVFLDGKEIKQLNVQW 1104
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA-EAVMAEL--GLTKC 205
+ + G V+Q+ IL+ ++ E + + R +S +E A EA + + L
Sbjct: 1105 LRAQLGIVSQEPILF-DCSIAENIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDK 1160
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
NT +G+ + +SGG+++R++IA ++ P +L+LDE TS LD T + ++V +
Sbjct: 1161 YNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKAR 1218
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
G+T + H+ S+ Q D ++V+ G+ G
Sbjct: 1219 EGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHG 1251
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 114/218 (52%), Gaps = 24/218 (11%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK---- 144
+E IL G+ V G+ +A++G SG GKST + ++ RL+ L G + +
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDP--LDGMVSIDGQDIRTI 457
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE--LGL 202
+++ + G V+Q+ +L+ T+ E + + R T+ EK ++ EA + + L
Sbjct: 458 NVRYLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEK-AVKEANAYDFIMKL 512
Query: 203 TKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
+T++G RG +SGG+++R++IA ++ NP +L+LDE TS LD+ + + + L
Sbjct: 513 PHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL 569
Query: 261 GSLVQRGKTIVTSMHQPS----SRVYQMFDKVLVLSEG 294
+ G+T + H+ S + V FD +++ +G
Sbjct: 570 DK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 14/224 (6%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTK--H 148
L+G++ V+ G++ I+GP+GSGKST++NV+ G L G +TN +P + H
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK-EPAELYH 81
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLST--KEKTSIAEAVMAELGLTKCE 206
F T + +TV E L+ + L++ +K E M E E
Sbjct: 82 YGIVRTFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 207 NTIIGNSFIRG---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ + + R +SGG+ K V I ++ NP ++++DEP +G+ A+ + + + L
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+G T + H+ V D + V+ G+ + G+G E +
Sbjct: 200 KAKGITFLIIEHR-LDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 30/220 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + GE+LAI G +GSGK+++L ++ G L G+ KH S R
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI-----------IKH-SGR 100
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK---CENTI 209
F +Q + P T++E ++ S S+ +A + +TK +NT+
Sbjct: 101 VSFCSQFSWIMPG-TIKENIIGVS-------YDEYRYKSVVKACQLQQDITKFAEQDNTV 152
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+G + +SGG+R R+S+A + + L +LD P LD ++ + + KT
Sbjct: 153 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 211
Query: 270 --IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+VTS + + DK+L+L +G ++G SE S
Sbjct: 212 RILVTSKMEHLRKA----DKILILHQGSSYFYGTFSELQS 247
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 16/225 (7%)
Query: 91 RTI--LNGITGMVSPGEILAILGPSGSGKSTML---NVLAGRLHQGHGLTGTILTNNNKP 145
RTI LN ++ V G+I ++G SG+GKST++ N+L G++L + +
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------RPTEGSVLVDGQEL 69
Query: 146 TK-HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
T S+ T Q +++ H + + + LP L K + V L L
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 129
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+ +S+ +SGG+++RV+IA + NP +L+ DE TS LD ++ L +
Sbjct: 130 LGDK--HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 265 QR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308
+R G TI+ H+ V ++ D V V+S G + SE S+
Sbjct: 188 RRLGLTILLITHE-MDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 110/210 (52%), Gaps = 19/210 (9%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H 148
+L G+T + PG++ A++GP+GSGKST+ +L L+Q G G +L + + +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPTG--GKVLLDGEPLVQYDHHY 90
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE---LGLTKC 205
+ + V Q+ +L+ + RE + + L RT + +E T++A A G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYG----LTRTPTMEEITAVAMESGAHDFISGFPQG 145
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL-GSLV 264
+T +G + + +SGG+R+ V++A ++ P LLILD+ TS LD+ R+ L S
Sbjct: 146 YDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPE 204
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294
+T++ HQ S + + +L L EG
Sbjct: 205 WASRTVLLITHQLS--LAERAHHILFLKEG 232
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 14/224 (6%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTK--H 148
L+G++ V G++ I+GP+GSGKST++NV+ G L G +TN +P + H
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK-EPAELYH 81
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLST--KEKTSIAEAVMAELGLTKCE 206
F T + +TV E L+ + L++ +K E M E E
Sbjct: 82 YGIVRTFQTPQPL--KEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 207 NTIIGNSFIRG---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ + + R +SGG+ K V I ++ NP ++++DEP +G+ A+ + + + L
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+G T + H+ V D + V+ G+ + G+G E +
Sbjct: 200 KAKGITFLIIEHR-LDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + G++LA+ G +G+GK+++L ++ G L G KH S R
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-----------KIKH-SGR 82
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212
F +Q + P T++E ++F R S + + E + + +N ++G
Sbjct: 83 ISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISK---FAEKDNIVLGE 138
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT--I 270
I +SGG+R R+S+A + + L +LD P LD + + + KT +
Sbjct: 139 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
VTS + + DK+L+L EG ++G SE
Sbjct: 198 VTSKMEHLKKA----DKILILHEGSSYFYGTFSE 227
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 16/225 (7%)
Query: 91 RTI--LNGITGMVSPGEILAILGPSGSGKSTML---NVLAGRLHQGHGLTGTILTNNNKP 145
RTI LN ++ V G+I ++G SG+GKST++ N+L G++L + +
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------RPTEGSVLVDGQEL 92
Query: 146 TK-HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
T S+ T Q +++ H + + + LP L K + V L L
Sbjct: 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 152
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+ +S+ +SGG+++RV+IA + NP +L+ D+ TS LD ++ L +
Sbjct: 153 LGDK--HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 265 QR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308
+R G TI+ H+ V ++ D V V+S G + SE S+
Sbjct: 211 RRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 14/224 (6%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTK--H 148
L+G++ V+ G++ I+GP+GSGKST++NV+ G L G +TN +P + H
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK-EPAELYH 81
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLST--KEKTSIAEAVMAELGLTKCE 206
F T + +TV E L+ + L++ +K E M E E
Sbjct: 82 YGIVRTFQTPQPL--KEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 207 NTIIGNSFIRG---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ + + R +SGG+ K V I ++ NP ++++D+P +G+ A+ + + + L
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLEL 199
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+G T + H+ V D + V+ G+ + G+G E +
Sbjct: 200 KAKGITFLIIEHR-LDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 16/225 (7%)
Query: 91 RTI--LNGITGMVSPGEILAILGPSGSGKSTML---NVLAGRLHQGHGLTGTILTNNNK- 144
RTI LN ++ V G+I ++G SG+GKST++ N+L G++L + +
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------RPTEGSVLVDGQEL 92
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
T S+ T Q ++ H + + + LP L K + V L L
Sbjct: 93 TTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 152
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+ +S+ +SGG+++RV+IA + NP +L+ D+ TS LD ++ L +
Sbjct: 153 LGDK--HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 265 QR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308
+R G TI+ H+ V ++ D V V+S G + SE S+
Sbjct: 211 RRLGLTILLITHE-XDVVKRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 29/220 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + GE+LAI G +GSGK+++L ++ G L G+ KH S R
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI-----------IKH-SGR 100
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK---CENTI 209
F +Q + P T++E ++ + S+ +A + +TK +NT+
Sbjct: 101 VSFCSQFSWIMPG-TIKENII------SGVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+G + +SGG+R R+S+A + + L +LD P LD ++ + + KT
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 270 --IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+VTS + + DK+L+L +G ++G SE S
Sbjct: 213 RILVTSKMEHLRKA----DKILILHQGSSYFYGTFSELQS 248
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + G++LA+ G +G+GK+++L ++ G L G KH S R
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-----------KIKH-SGR 70
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212
F +Q + P T++E ++F R S + + E + + +N ++G
Sbjct: 71 ISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISK---FAEKDNIVLGE 126
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT--I 270
I +SGG+R R+S+A + + L +LD P LD + + + KT +
Sbjct: 127 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
VTS + + DK+L+L EG ++G SE
Sbjct: 186 VTSKMEHLKKA----DKILILHEGSSYFYGTFSE 215
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 16/171 (9%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H 148
+L G+T + PG++ A++GP+GSGKST+ +L L+Q G G +L + + +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPTG--GKVLLDGEPLVQYDHHY 90
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE---LGLTKC 205
+ + V Q+ +L+ + RE + + L RT + +E T++A A G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYG----LTRTPTMEEITAVAMESGAHDFISGFPQG 145
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
+T +G + + +SGG+R+ V++A ++ P LLILD TS LD+ R+
Sbjct: 146 YDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 113/220 (51%), Gaps = 17/220 (7%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKH--- 148
L I + G+ +A++G SGSGKST+ +++ + +GH IL + + ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH-----ILMDGHDLREYTLA 413
Query: 149 -ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
+ + V+Q+ L+ TV + + R +E +A A+ + +
Sbjct: 414 SLRNQVALVSQNVHLFND-TVANNIAYARTEEYSRE-QIEEAARMAYAMDFINKMDNGLD 471
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
TIIG + + +SGG+R+R++IA +L + +LILDE TS LD+ + + + L L Q+
Sbjct: 472 TIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKN 529
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+T + H+ S+ + D+++V+ +G + G SE ++
Sbjct: 530 RTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHSELLA 567
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 30/217 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + G++LA+ G +G+GK+++L ++ G L G KH S R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-----------KIKH-SGR 100
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC---ENTI 209
F +Q+ + P T++E ++ S S+ +A E ++K +N +
Sbjct: 101 ISFCSQNSWIMPG-TIKENIIGVS-------YDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+G I +SGG+R R+S+A + + L +LD P LD + + + KT
Sbjct: 153 LGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 270 --IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+VTS + + DK+L+L EG ++G SE
Sbjct: 212 RILVTSKMEHLKKA----DKILILHEGSSYFYGTFSE 244
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 30/217 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + G++LA+ G +G+GK+++L ++ G L G KH S R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-----------KIKH-SGR 100
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC---ENTI 209
F +Q+ + P T++E ++ S S+ +A E ++K +N +
Sbjct: 101 ISFCSQNSWIMPG-TIKENIIGVS-------YDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+G I +SGG+R R+S+A + + L +LD P LD + + + KT
Sbjct: 153 LGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 270 --IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+VTS + + DK+L+L EG ++G SE
Sbjct: 212 RILVTSKMEHLKKA----DKILILHEGSSYFYGTFSE 244
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 32/245 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L G+T + PGE+ A++GP+GSGKST+ +L L+Q TG L + KP R
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ-NLYQP---TGGQLLLDGKPLPQYEHR 87
Query: 153 TGFVTQDDILYPHLTV----RETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-------- 200
Y H V +E VF L+ +K ++ E A +
Sbjct: 88 ----------YLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFI 137
Query: 201 -GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
GL + +T + + + +SGG+R+ V++A ++ P +LILD+ TS LD+ + ++
Sbjct: 138 SGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 196
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFP 319
L +R V + Q S V Q D +L L G G + M E G +
Sbjct: 197 LYESPERYSRSVLLITQHLSLVEQA-DHILFLEGGAIREGGTHQQLM---EKKGCYWAMV 252
Query: 320 MNPAD 324
PAD
Sbjct: 253 QAPAD 257
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + G++LA+ G +G+GK+++L ++ G L G KH S R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-----------KIKH-SGR 100
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212
F +Q + P T++E ++ R S + + E + + +N ++G
Sbjct: 101 ISFCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLEEDISK---FAEKDNIVLGE 156
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT--I 270
I +SGG+R R+S+A + + L +LD P LD + + + KT +
Sbjct: 157 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
VTS + + DK+L+L EG ++G SE
Sbjct: 216 VTSKMEHLKKA----DKILILHEGSSYFYGTFSE 245
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 33/233 (14%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK 147
+ E T L ++G V GEIL ++GP+G+GKST+L AG G G + +P +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXT-SGKG----SIQFAGQPLE 64
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKT------SIAEAVMAELG 201
S T+ + +L+ ++T F + + TL +KT +A A+ +
Sbjct: 65 AWS-----ATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 119
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEML-----INPS--LLILDEPTSGLDSTAAY 254
L + N +SGGE +RV +A +L NP+ LL+LDEP + LD
Sbjct: 120 LGRSTNQ---------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQS 170
Query: 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L L +L Q+G IV S H + + + +L G+ L G+ E ++
Sbjct: 171 ALDKILSALCQQGLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + G++LA+ G +G+GK+++L ++ G L G KH S R
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-----------KIKH-SGR 70
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC---ENTI 209
F +Q + P T++E ++ S S+ +A E ++K +N +
Sbjct: 71 ISFCSQFSWIMPG-TIKENIIGVS-------YDEYRYRSVIKACQLEEDISKFAEKDNIV 122
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+G I +SGG+R R+S+A + + L +LD P LD + + + KT
Sbjct: 123 LGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 181
Query: 270 --IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+VTS + + DK+L+L EG ++G SE
Sbjct: 182 RILVTSKMEHLKKA----DKILILHEGSSYFYGTFSE 214
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 33/233 (14%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK 147
+ E T L ++G V GEIL ++GP+G+GKST+L +AG + G G + +P +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKG----SIQFAGQPLE 64
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKT------SIAEAVMAELG 201
S T+ + +L+ ++T F + + TL +KT +A A+ +
Sbjct: 65 AWS-----ATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 119
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEML-----INPS--LLILDEPTSGLDSTAAY 254
L + N +SGGE +RV +A +L NP+ LL+LD+P + LD
Sbjct: 120 LGRSTNQ---------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQS 170
Query: 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L L +L Q+G IV S H + + + +L G+ L G+ E ++
Sbjct: 171 ALDKILSALSQQGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 33/233 (14%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK 147
+ E T L ++G V GEIL ++GP+G+GKST+L AG G G + +P +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXT-SGKG----SIQFAGQPLE 64
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKT------SIAEAVMAELG 201
S T+ + +L+ ++T F + + TL +KT +A A+ +
Sbjct: 65 AWS-----ATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 119
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEML-----INPS--LLILDEPTSGLDSTAAY 254
L + N +SGGE +RV +A +L NP+ LL+LDEP + LD
Sbjct: 120 LGRSTNQ---------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQS 170
Query: 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L L +L Q+G IV S H + + + +L G+ L G+ E ++
Sbjct: 171 ALDKILSALSQQGLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 111/223 (49%), Gaps = 21/223 (9%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GR-LHQGHGLTGTILTNNNKP 145
L I + G+ +A++G SGSGKST+ +++ G L GH L L +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLAS---- 414
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ + V+Q+ L+ TV + + + R +E +A A+ +
Sbjct: 415 ---LRNQVALVSQNVHLFND-TVANNIAYARTEQYSRE-QIEEAARMAYAMDFINKMDNG 469
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
+T+IG + + +SGG+R+R++IA +L + +LILDE TS LD+ + + + L L Q
Sbjct: 470 LDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-Q 527
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308
+ +T + H+ S+ + D+++V+ +G + G ++ + +
Sbjct: 528 KNRTSLVIAHRLST--IEKADEIVVVEDGVIVERGTHNDLLEH 568
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 23/222 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHIS 150
+ GI V G+I+ ++G +G+GK+T L+ +AG + G G +TN KP H+
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN--KPA-HVI 78
Query: 151 KRTG--FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA---EAVMAELGLTKC 205
R G V + ++P LTV E L + R K+K I E + + K
Sbjct: 79 NRXGIALVPEGRRIFPELTVYENLXXGAYNR-------KDKEGIKRDLEWIFSLFPRLKE 131
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
+G + +SGGE++ ++I + P LL DEP+ GL + + + Q
Sbjct: 132 RLKQLGGT----LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
G TI+ + Q + ++ VL G+ + GK SE +
Sbjct: 188 EGTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 16/171 (9%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H 148
+L G+T + PG++ A++GP+GSGKST+ +L L+Q G G +L + + +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPTG--GKVLLDGEPLVQYDHHY 90
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE---LGLTKC 205
+ + V Q+ +L+ + RE + + L RT + +E T++A A G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYG----LTRTPTMEEITAVAMESGAHDFISGFPQG 145
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
+T +G + + ++ G+R+ V++A ++ P LLILD TS LD+ R+
Sbjct: 146 YDTEVGETGNQ-LAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 33/233 (14%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK 147
+ E T L ++G V GEIL ++GP+G+GKST+L +AG + G G + +P +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKG----SIQFAGQPLE 64
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKT------SIAEAVMAELG 201
S T+ + +L+ ++T F + + TL +KT +A A+ +
Sbjct: 65 AWS-----ATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 119
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEML-----INPS--LLILDEPTSGLDSTAAY 254
L + N +SGGE +RV +A +L NP+ LL+LD+P LD
Sbjct: 120 LGRSTNQ---------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQS 170
Query: 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L L +L Q+G IV S H + + + +L G+ L G+ E ++
Sbjct: 171 ALDKILSALSQQGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 24/191 (12%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI-SK 151
+L + G+I ++G +GSGK+T+L +LAG L G I + + + K
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL----AAAGEIFLDGSPADPFLLRK 81
Query: 152 RTGFVTQDDILYPH-----LTVRETLVFC-SLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
G+V Q+ P TV E + F ++ L + K + E V GL+
Sbjct: 82 NVGYVFQN----PSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELV----GLSGL 133
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
N +SGG+++R++IA + + L LDEP S LD + + L SL
Sbjct: 134 AAADPLN-----LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKN 188
Query: 266 RGKTIVTSMHQ 276
GK I+ H+
Sbjct: 189 EGKGIILVTHE 199
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + G++LA+ G +G+GK+++L ++ G L G KH S R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-----------KIKH-SGR 100
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212
F +Q + P T++E ++F R S + + E + + +N ++G
Sbjct: 101 ISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISK---FAEKDNIVLGE 156
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT--I 270
I +S G++ ++S+A + + L +LD P LD + + + KT +
Sbjct: 157 GGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
VTS + + DK+L+L EG ++G SE
Sbjct: 216 VTSKMEHLKKA----DKILILHEGSSYFYGTFSE 245
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 18/194 (9%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160
++ G+ILA+LG +G GKST+L++L G +H+ + G I + + GFV Q
Sbjct: 28 LNKGDILAVLGQNGCGKSTLLDLLLG-IHRP--IQGKI---------EVYQSIGFVPQ-- 73
Query: 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG 220
+ +++ L+ ++T K + +A L T + +SG
Sbjct: 74 --FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSG 131
Query: 221 GERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSS 279
G+R+ + IA + L++LDEPTS LD ++S L L Q + T+V + HQP +
Sbjct: 132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-N 190
Query: 280 RVYQMFDKVLVLSE 293
+V + +K L+L++
Sbjct: 191 QVVAIANKTLLLNK 204
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL-----HQGHGLTGTILT-NNNKPTKHISKRT 153
+V G ++ I+GP+G+GKST + +LAG+L G I N+ + K
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNS 213
+ + ++ + V ++ L L ++T E V+ L L EN +
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGKVIEL---LKKADETGKLEEVVKALEL---ENVL--ER 154
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTS 273
I+ +SGGE +RV+IA +L N + DEP+S LD + L + GK+++
Sbjct: 155 EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 274 MHQ 276
H
Sbjct: 215 EHD 217
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 24/151 (15%)
Query: 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158
G + GE++ I+GP+G GK+T + LAG G LT KP + G
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEG---- 362
Query: 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGI 218
TV E L +L E ++ LG+ + + +
Sbjct: 363 --------TVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDREVNE-----L 402
Query: 219 SGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
SGGE +RV+IA +L + + +LDEP++ LD
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLD 433
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 136 GTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA 195
G + + + + R V Q L+ H+TV E ++ + L LS + A
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALK 135
Query: 196 VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
+A++G+ + + +SGG+++RVSIA + + P +L+ DEPTS LD
Sbjct: 136 YLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 256 LVSTLGSLVQRGKTIVTSMHQ 276
++ + L + GKT+V H+
Sbjct: 192 VLRIMQQLAEEGKTMVVVTHE 212
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 27/219 (12%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
LNGIT + G ++A++G G GKS++L+ L + + G I
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA------------IKGSV 68
Query: 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-LTKCENTIIGN 212
+V Q + + ++RE ++F L P S + A A++ +L L + T IG
Sbjct: 69 AYVPQQAWIQ-NDSLRENILFGCQLEEPYYRSVIQ----ACALLPDLEILPSGDRTEIGE 123
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL----GSLVQRGK 268
+ +SGG+++RVS+A + N + + D+P S +D+ + + G L + +
Sbjct: 124 KGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTR 182
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+VT S D ++V+S G+ G E ++
Sbjct: 183 ILVTH----SMSYLPQVDVIIVMSGGKISEMGSYQELLA 217
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 24/214 (11%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + G++LA+ G +G+GK+++L ++ G L G KH S R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-----------KIKH-SGR 100
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212
F +Q + P T++E ++ S R S + + E + + +N ++G
Sbjct: 101 ISFCSQFSWIMPG-TIKENIIGVSYDEY-RYRSVIKACQLEEDISK---FAEKDNIVLGE 155
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT--I 270
I +S G++ ++S+A + + L +LD P LD + + + KT +
Sbjct: 156 GGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
VTS + + DK+L+L EG ++G SE
Sbjct: 215 VTSKMEHLKKA----DKILILHEGSSYFYGTFSE 244
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 24/164 (14%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
K Q +LN G S EIL ++G +G+GK+T++ +LAG L G L + KP
Sbjct: 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQ 420
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
K K G V Q +F +R + L+ + +T + + + +
Sbjct: 421 KIAPKFPGTVRQ--------------LFFKKIR-GQFLNPQFQTDVVKPLRID------- 458
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
II ++ +SGGE +RV+I + I + ++DEP++ LDS
Sbjct: 459 -DIIDQE-VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 39/216 (18%)
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHG--------------LTGTILTNNNKPTKH 148
PG++L ++G +G GKST L +LAG+ G G+ L N TK
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYF--TKM 159
Query: 149 ISKRTGFVTQ----DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ + + D+I P LL+L EK+ E V + + +
Sbjct: 160 LEDDIKAIIKPQYVDNI--PRAIKGPVQKVGELLKL-----RMEKS--PEDVKRYIKILQ 210
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
EN + + I +SGGE +R +I + + + DEP+S LD + SL+
Sbjct: 211 LENVLKRD--IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL 268
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
K ++ H S Y LS+ C+ +G
Sbjct: 269 APTKYVICVEHDLSVLDY--------LSDFVCIIYG 296
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 31/182 (17%)
Query: 88 IQERTI--LNGITGMVSPGEILAILGPSGSGKSTMLN-----------VLAGR-LHQGHG 133
++E TI +GI+ + + AI+G S SGKST++ +L+GR L++G
Sbjct: 16 VREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKD 75
Query: 134 LTGTILTNNNKPTKHIS-KRTGFVTQ--DDILYPHLTVRETL---VFCSLLRLPRTLSTK 187
L LT + + I K V Q L P + V E V +R
Sbjct: 76 L----LTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW------- 124
Query: 188 EKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247
+ + E +L + + + NS+ +SGG ++RV IA +L++P +LILDEPTS
Sbjct: 125 SHSELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSA 184
Query: 248 LD 249
LD
Sbjct: 185 LD 186
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 39/184 (21%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
Q +TIL I+ ++ G+ + G +G+GK+T+LN+L +GT+ P K
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY---EPATSGTVNLFGKXPGK- 87
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMA----ELGLTK 204
+ Y TVR+ + F S L + +E + + V++ +G+ +
Sbjct: 88 ------------VGYSAETVRQHIGFVSHSLLEKF---QEGERVIDVVISGAFKSIGVYQ 132
Query: 205 CENTIIGN----------------SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248
+ I N +I +S GE++RV IA + P +LILDEP +GL
Sbjct: 133 DIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGL 192
Query: 249 DSTA 252
D A
Sbjct: 193 DFIA 196
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 30/223 (13%)
Query: 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158
G + GE++ I+GP+G GK+T + +LAG G LT KP ++ G
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG---- 432
Query: 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGI 218
TV E L +L E ++ LG+ + + + +
Sbjct: 433 --------TVYELLSKIDSSKLNSNFYKTE-------LLKPLGIID-----LYDRNVEDL 472
Query: 219 SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278
SGGE +RV+IA +L + + +LDEP++ LD + + L+++ + +
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532
Query: 279 SRVYQMFDKVLVLS-----EGRCLYFGKGSEAMSYF-ESVGFS 315
+ + D+++V GR L E M+ F SVG +
Sbjct: 533 LMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVGIT 575
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 14/183 (7%)
Query: 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159
+V G ++ I+GP+G+GK+T + +LAG+L + +N+ I G Q+
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQL------IPNLCEDNDSWDNVIRAFRGNELQN 166
Query: 160 DILYPHLT---VRETLVFCSLLRLPRTLSTKEK---TSIAEAVMAELGLTKCENTIIGNS 213
+ L +R + + LP+ + K + + E E + + E + +
Sbjct: 167 --YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR 224
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTS 273
+ +SGGE +RV+IA +L DEP+S LD ++ + L GK ++
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 274 MHQ 276
H
Sbjct: 285 EHD 287
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 30/223 (13%)
Query: 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158
G + GE++ I+GP+G GK+T + +LAG G LT KP ++ G
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG---- 418
Query: 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGI 218
TV E L +L E ++ LG+ + + + +
Sbjct: 419 --------TVYELLSKIDSSKLNSNFYKTE-------LLKPLGIID-----LYDRNVEDL 458
Query: 219 SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278
SGGE +RV+IA +L + + +LDEP++ LD + + L+++ + +
Sbjct: 459 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
Query: 279 SRVYQMFDKVLVLS-----EGRCLYFGKGSEAMSYF-ESVGFS 315
+ + D+++V GR L E M+ F SVG +
Sbjct: 519 LMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVGIT 561
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 14/183 (7%)
Query: 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159
+V G ++ I+GP+G+GK+T + +LAG+L + +N+ I G Q+
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQL------IPNLCEDNDSWDNVIRAFRGNELQN 152
Query: 160 DILYPHLT---VRETLVFCSLLRLPRTLSTKEK---TSIAEAVMAELGLTKCENTIIGNS 213
+ L +R + + LP+ + K + + E E + + E + +
Sbjct: 153 --YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR 210
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTS 273
+ +SGGE +RV+IA +L DEP+S LD ++ + L GK ++
Sbjct: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 270
Query: 274 MHQ 276
H
Sbjct: 271 EHD 273
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 20/192 (10%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
++ +L IT + G ++ GP+G GK+T+L ++ L L G I+ N P +
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNG-VPITKV 76
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV--MAELGLTKCEN 207
+ F+ ++ I+ ++V + L + L + K I +A+ + L L K
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV----NKNEIMDALESVEVLDLKKK-- 130
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR-LVSTLGSLVQR 266
+ +S G +RV +A +L+N + +LD+P +D + ++ L S L L ++
Sbjct: 131 -------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 183
Query: 267 GKTIVTSMHQPS 278
G I++S + S
Sbjct: 184 GIVIISSREELS 195
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 26/197 (13%)
Query: 98 TGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157
G GEI+ ILGP+G GK+T +L G + G P K I
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV--------TPEKQI-----LSY 334
Query: 158 QDDILYPHL--TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFI 215
+ ++P+ TV++ L S LST + E V L L + + S +
Sbjct: 335 KPQRIFPNYDGTVQQYLENAS----KDALST--SSWFFEEVTKRLNLHR-----LLESNV 383
Query: 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
+SGGE +++ IA + L +LD+P+S LD Y + + + + K + +
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 276 QPSSRVYQMFDKVLVLS 292
S + D+++V
Sbjct: 444 HDLSIHDYIADRIIVFK 460
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 42/206 (20%)
Query: 91 RTILNGIT--GMVSPGE--ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
R +NG G+ +P IL +LG +G GK+T+L +LAG I+ N P
Sbjct: 8 RYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGE----------IIPNFGDPN 57
Query: 147 KHISKRTGFVTQDDILYPHLTVRETL-----VFCSLLRLPRTLSTKEKTS-IAEAVMAEL 200
+ K D++L +E ++ + L++ + E S + + E+
Sbjct: 58 SKVGK-------DEVL-KRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEI 109
Query: 201 GLTKCEN-------------TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247
LTK + T + N +SGG +R+ +A +L + I D+P+S
Sbjct: 110 -LTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSY 168
Query: 248 LDSTAAYRLVSTLGSLVQRGKTIVTS 273
LD + + L++ IV
Sbjct: 169 LDVRERMNMAKAIRELLKNKYVIVVD 194
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 218 ISGGERKRVSIAHEML---INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGGE +R+ +A E+ +L ILDEPT GL +LV L LV RG T++
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 275 HQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADF 325
H V + D ++ L +G + Y + G NP +
Sbjct: 866 HNLD--VIKNADHIIDLGP-------EGGKEGGYIVATGTPEEIAKNPHSY 907
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 218 ISGGERKRVSIAHEML--INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
+SGGE +R+ +A ++ + + +LDEPT GL RL+ TL L G T++ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 276 Q 276
Sbjct: 525 D 525
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 218 ISGGERKRVSIA---HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGGE +RV +A H +L ILDEPT+GL RL+ L LV G T++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 275 H 275
H
Sbjct: 906 H 906
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 218 ISGGERKRVSIAHEM--LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
+SGGE +R+ +A ++ + L +LDEP+ GL RL++TL S+ G T++ H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 276 QPSS 279
+
Sbjct: 565 DEDT 568
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLN-----VLAGRLHQGHGLTG 136
L ++ + G +A+ G SGSGKST++N LA +LH+ G
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPG 687
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 218 ISGGERKRVSIA---HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGGE +RV +A H +L ILDEPT+GL RL+ L LV G T++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 275 H 275
H
Sbjct: 906 H 906
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 218 ISGGERKRVSIAHEM--LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
+SGGE +R+ +A ++ + L +LDEP+ GL RL++TL S G T++ H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 276 QPSS 279
+
Sbjct: 565 DEDT 568
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLN-----VLAGRLHQGHGLTG 136
L ++ + G +A+ G SGSGKST++N LA +LH+ G
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPG 687
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 33/170 (19%)
Query: 109 ILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD--ILYPHL 166
I GP+G GKST++ +A + GF TQ++ +Y
Sbjct: 466 ICGPNGCGKSTLMRAIAN-----------------------GQVDGFPTQEECRTVYVEH 502
Query: 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV 226
+ T S+L K +I + ++ E G T + +I I +SGG + ++
Sbjct: 503 DIDGTHSDTSVLDFVFESGVGTKEAIKDKLI-EFGFT---DEMIAMP-ISALSGGWKMKL 557
Query: 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276
++A +L N +L+LDEPT+ LD+ LV+ L + G T +T H
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC---GITSITISHD 604
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
I+ +S IRG+SGG++ ++ +A P L++LDEPT+ LD + L L + G
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGV 951
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGR 295
I+T + + ++V + +GR
Sbjct: 952 IIIT---HSAEFTKNLTEEVWAVKDGR 975
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 107 LAILGPSGSGKSTMLNVLAGRL 128
+A++GP+G+GKST++NVL G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 218 ISGGERKRVSIA---HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGGE +RV +A H +L ILDEPT+GL RL+ L LV G T++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 275 HQ 276
H
Sbjct: 604 HN 605
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 218 ISGGERKRVSIAHEM--LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
+SGGE +R+ +A ++ + L +LDEP+ GL RL++TL S+ G T++ H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 276 QPSS 279
+
Sbjct: 263 DEDT 266
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 218 ISGGERKRVSIAHEML---INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGGE +RV +A E+ ++ ILDEPT+GL +L++ + LV +G T++
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 275 HQ 276
H
Sbjct: 924 HN 925
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 218 ISGGERKRVSIAHEM---LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGGE +R+ +A ++ L+ L +LDEP+ GL RL+ TL L G T++
Sbjct: 522 LSGGEAQRIRLATQIGSGLVG-VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVE 580
Query: 275 HQPSS 279
H +
Sbjct: 581 HDEDT 585
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 33/170 (19%)
Query: 109 ILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD--ILYPHL 166
I GP+G GKST+ +A + GF TQ++ +Y
Sbjct: 466 ICGPNGCGKSTLXRAIAN-----------------------GQVDGFPTQEECRTVYVEH 502
Query: 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV 226
+ T S+L K +I + ++ E G T + I I +SGG + ++
Sbjct: 503 DIDGTHSDTSVLDFVFESGVGTKEAIKDKLI-EFGFT---DEXIAXP-ISALSGGWKXKL 557
Query: 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276
++A +L N +L+LDEPT+ LD+ LV+ L + G T +T H
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC---GITSITISHD 604
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 182 RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241
R L+ KE E + LGL + I+ +S IRG+SGG++ ++ +A P L++L
Sbjct: 873 RPLTRKE----IEEHCSXLGL---DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVL 925
Query: 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
DEPT+ LD + L L + G I+T + + ++V + +GR
Sbjct: 926 DEPTNYLDRDSLGALSKALKEF-EGGVIIIT---HSAEFTKNLTEEVWAVKDGR 975
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 107 LAILGPSGSGKSTMLNVLAGRL 128
+A++GP+G+GKST++NVL G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 33/170 (19%)
Query: 109 ILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD--ILYPHL 166
I GP+G GKST+ +A + GF TQ++ +Y
Sbjct: 460 ICGPNGCGKSTLXRAIAN-----------------------GQVDGFPTQEECRTVYVEH 496
Query: 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV 226
+ T S+L K +I + ++ E G T + I I +SGG + ++
Sbjct: 497 DIDGTHSDTSVLDFVFESGVGTKEAIKDKLI-EFGFT---DEXIAXP-ISALSGGWKXKL 551
Query: 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276
++A +L N +L+LDEPT+ LD+ LV+ L + G T +T H
Sbjct: 552 ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC---GITSITISHD 598
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 182 RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241
R L+ KE E + LGL + I+ +S IRG+SGG++ ++ +A P L++L
Sbjct: 867 RPLTRKE----IEEHCSXLGL---DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVL 919
Query: 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
DEPT+ LD + L L + G I+T + + ++V + +GR
Sbjct: 920 DEPTNYLDRDSLGALSKALKEF-EGGVIIIT---HSAEFTKNLTEEVWAVKDGR 969
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 107 LAILGPSGSGKSTMLNVLAGRL 128
+A++GP+G+GKST++NVL G L
Sbjct: 696 IAVIGPNGAGKSTLINVLTGEL 717
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 218 ISGGERKRVSIAHEMLINP---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGGE +R+ +A E+ + ++ +LDEPT+GL RL L LV G T++
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 275 HQPSSRVYQMFDKVLVLSEG 294
H+ +V D VL + G
Sbjct: 791 HK--MQVVAASDWVLDIGPG 808
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 218 ISGGERKRVSIAHEMLIN--PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
+S GE +R+ +A ++ N + +LDEP++GL L+S L +L + G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 31/243 (12%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISK 151
IL I+ +SPG+ + +LG +GSGKST+L+ L+ + ++ ++ + K
Sbjct: 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRK 94
Query: 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE--AVMAELGLTKCENTI 209
G + Q + +F R + L S E V E+GL
Sbjct: 95 AFGVIPQ-----------KVFIFSGTFR--KNLDPNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 210 IGN---SFIRG---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
G + G +S G ++ + +A +L +L+LDEP++ LD + TL
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201
Query: 264 VQRGKTIVTSMHQPSSRVYQMF--DKVLVLSEGRCLYFGKGSEAMSYFES---VGFSPSF 318
I+ +R+ M D+ LV+ E + + E Y GF S
Sbjct: 202 FADCTVILC-----EARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSP 256
Query: 319 PMN 321
MN
Sbjct: 257 KMN 259
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 216 RGISGGERKRVSIAHEMLINP------SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
RG+SGGER +SI+ M + +DE S LD+ ++ S L L + K
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEG 294
IV H + FD+ L ++ G
Sbjct: 338 IVFITH--DREFSEAFDRKLRITGG 360
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 218 ISGGERKRVSIAHEMLIN------PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
+SGGER + +A + ++ SLLILDEPT LD +L++ + +++ ++
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 272 TSMH 275
H
Sbjct: 144 LVSH 147
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 218 ISGGERKRVSIAHEMLIN------PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
+SGGER + +A + ++ SLLILDEPT LD +L++ + +++ ++
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 148
Query: 272 TSMH 275
H
Sbjct: 149 LVSH 152
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 103 PG-EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI 161
PG +++A+ G GSGKST+ N LA L GL ++ + H+ R + +
Sbjct: 20 PGRQLVALSGAPGSGKSTLSNPLAAAL-SAQGLPAEVVPXDG---FHLDNR---LLEPRG 72
Query: 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKT---------SIAEAVMAELGLTKCENTIIGN 212
L P ET F RL L +E+ IA A AE+G +C II
Sbjct: 73 LLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVG-PECRVAIIEG 131
Query: 213 SFIRGISGGERKRVSI 228
+++ + G R +I
Sbjct: 132 NYLLFDAPGWRDLTAI 147
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 218 ISGGERKRVSIAHEMLIN------PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
+SGGER + +A + ++ SLLILDEPT LD +L++ + +++ ++
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 272 TSMH 275
H
Sbjct: 118 LVSH 121
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN---NKPTKHISKRTGF----- 155
GE + ILGP+GSGK+T+L ++G L +G I N K +I T
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFINGMEVRKIRNYIRYSTNLPEAYE 85
Query: 156 --VTQDDI--LYPHLTVRETLVFCSLLR 179
VT +DI LY L + +F +L+
Sbjct: 86 IGVTVNDIVYLYEELKGLDRDLFLEMLK 113
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-------TNNNKPTKHISKRTGFVTQD 159
+ ++GP G+GK T L R H H TG +L T K I + G V+ D
Sbjct: 7 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS-D 65
Query: 160 DILYPHLTVRETLV---FCS----LLRLPRTLSTKEK 189
DI+ +++ L C L+ PRT+ EK
Sbjct: 66 DIMVN--MIKDELTNNPACKNGFILVGFPRTIPQAEK 100
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 216 RGISGGERKRVSIAHEMLINP------SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
RG+SGGER +SI+ + +DE S LD+ ++ S L L + K
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEG 294
IV H + FD+ L ++ G
Sbjct: 338 IVFITH--DREFSEAFDRKLRITGG 360
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-------TNNNKPTKHISKRTGFVTQD 159
+ ++GP G+GK T L R H H TG +L T K I + G V+ D
Sbjct: 7 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS-D 65
Query: 160 DIL 162
DI+
Sbjct: 66 DIM 68
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-------TNNNKPTKHISKRTGFVTQD 159
+ ++GP G+GK T L R H H TG +L T K I + G V+ D
Sbjct: 7 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS-D 65
Query: 160 DIL 162
DI+
Sbjct: 66 DIM 68
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH----GLTGTILTNNNKPTKHISKRTGF 155
M P ++ + GPSG+GKST+L +L Q H G + + T N +P + K F
Sbjct: 1 MAGPRPVV-LSGPSGAGKSTLLK----KLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYF 55
Query: 156 VTQD 159
VT++
Sbjct: 56 VTRE 59
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 218 ISGGERKRVSIAHEMLIN------PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
+SGGER + +A + ++ SLLILDEPT LD +L++ + +++ ++
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 272 TSMHQPS 278
H
Sbjct: 329 LVSHDEE 335
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 213 SFIRGISGGERKRVSIAHEMLIN------PSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+F+RG GER + +A + ++ SLLILDEPT LD +L++ + +++
Sbjct: 52 TFLRG---GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 108
Query: 267 GKTIVTSMH 275
++ H
Sbjct: 109 IPQVILVSH 117
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 218 ISGGERKRVSIAHEMLIN------PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
+SGGER + +A + ++ SLLILDEPT LD +L++ + +++ ++
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 272 TSMHQPS 278
H
Sbjct: 309 LVSHDEE 315
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 107 LAILGPSGSGKSTMLNVLA--GRLHQGHGLTGTI-LTNNNKPTKH 148
+A+ G +GSGKS+ +N L G +G TG + +T P KH
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116
>pdb|3Q6M|A Chain A, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|B Chain B, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|C Chain C, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6N|A Chain A, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|B Chain B, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|C Chain C, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|D Chain D, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|E Chain E, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|F Chain F, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
Length = 448
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 158 QDDILYPHLTVRETLVFCSLLRLPRTL------STKEKTSIAEAVMAELGLTKCENTIIG 211
+D + H +V L F +LL +PR + K+K +I V + CE I
Sbjct: 31 EDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPE 90
Query: 212 N-SFIRGISGGERKRVSIAHEMLINPSLL 239
+FIRG+ E ++I+ EML +L
Sbjct: 91 YLNFIRGVVDSEDLPLNISREMLQQSKIL 119
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 107 LAILGPSGSGKSTMLNVLA--GRLHQGHGLTGTI-LTNNNKPTKH 148
+A+ G +GSGKS+ +N L G +G TG + +T P KH
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 107 LAILGPSGSGKSTMLNVLA--GRLHQGHGLTGTI-LTNNNKPTKH 148
+A+ G +GSGKS+ +N L G +G TG + +T P KH
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 107 LAILGPSGSGKSTMLNVLA--GRLHQGHGLTGTI-LTNNNKPTKH 148
+A+ G +GSGKS+ +N L G +G TG + +T P KH
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 111 GPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGF 155
G SG+GKST+ LA RL + G T+L + + +H+S GF
Sbjct: 376 GLSGAGKSTLARALAARLMEMGGRCVTLL-DGDIVRRHLSSELGF 419
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI----SKRTGFVTQDD-- 160
+ + GP GSGK+ ++N A R + + G I + + T+HI + T +VT
Sbjct: 1270 IILCGPPGSGKTMIMNN-ALRNSSLYDVVG-INFSKDTTTEHILSALHRHTNYVTTSKGL 1327
Query: 161 ILYPHLTVRETLVFCSLLRLPR 182
L P ++ ++FC + LP+
Sbjct: 1328 TLLPKSDIKNLVLFCDEINLPK 1349
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI----SKRTGFVTQDD-- 160
+ + GP GSGK+ ++N A R + + G I + + T+HI + T +VT
Sbjct: 1051 IILCGPPGSGKTMIMNN-ALRNSSLYDVVG-INFSKDTTTEHILSALHRHTNYVTTSKGL 1108
Query: 161 ILYPHLTVRETLVFCSLLRLPR 182
L P ++ ++FC + LP+
Sbjct: 1109 TLLPKSDIKNLVLFCDEINLPK 1130
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 404 FATWLNQFSILLHRSLKERKHESLNTLRVFQVIAASLLSGIMWWHSDFRE-----VQDRL 458
F LN++ I+ L +R E+ NT+ + + A + ++G++ + D E +++++
Sbjct: 71 FDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQI 130
Query: 459 GLFFFI-SVF 467
LF+ I SVF
Sbjct: 131 NLFYSIKSVF 140
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 109 ILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP-HLT 167
ILGP GSGK T+ +A H +G L N K + + + + +L P H+
Sbjct: 32 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVI 91
Query: 168 VR 169
R
Sbjct: 92 TR 93
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 109 ILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP-HLT 167
ILGP GSGK T+ +A H +G L N K + + + + +L P H+
Sbjct: 10 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVI 69
Query: 168 VR 169
R
Sbjct: 70 TR 71
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-------TNNNKPTKHISKRTGFVTQD 159
+ I GP+GSGK T N++ + H +G I T K K R G + D
Sbjct: 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDR-GDLVPD 61
Query: 160 DILYPHLTVRETL 172
DI P V ETL
Sbjct: 62 DITIP--MVLETL 72
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-------TNNNKPTKHISKRTGFVTQD 159
+ I GP+GSGK T N++ + H +G I T K K R G + D
Sbjct: 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDR-GDLVPD 61
Query: 160 DILYPHLTVRETL 172
DI P V ETL
Sbjct: 62 DITIP--MVLETL 72
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160
+ I GPSG+GKST+L L G + + T + + K FV+ D+
Sbjct: 5 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDE 58
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160
+ I GPSG+GKST+L L G + + T + + K FV+ D+
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDE 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,926,380
Number of Sequences: 62578
Number of extensions: 699559
Number of successful extensions: 1990
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1706
Number of HSP's gapped (non-prelim): 194
length of query: 679
length of database: 14,973,337
effective HSP length: 105
effective length of query: 574
effective length of database: 8,402,647
effective search space: 4823119378
effective search space used: 4823119378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)