Query 005754
Match_columns 679
No_of_seqs 463 out of 3164
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 13:16:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 100.0 9E-112 2E-116 978.4 74.1 655 1-678 1-658 (659)
2 KOG0061 Transporter, ABC super 100.0 6E-105 1E-109 913.1 61.3 583 38-678 18-608 (613)
3 TIGR00955 3a01204 The Eye Pigm 100.0 3E-101 7E-106 889.7 64.5 567 88-677 35-612 (617)
4 PLN03140 ABC transporter G fam 100.0 6.9E-98 2E-102 918.8 67.3 582 41-678 863-1466(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 9.8E-98 2E-102 920.4 62.1 579 88-678 71-694 (1394)
6 PLN03140 ABC transporter G fam 100.0 9.7E-97 2E-101 908.7 59.6 612 39-678 125-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 2.6E-94 5.7E-99 889.9 67.1 575 43-677 757-1389(1394)
8 KOG0065 Pleiotropic drug resis 100.0 3E-93 6.4E-98 828.8 39.6 596 22-676 753-1381(1391)
9 KOG0065 Pleiotropic drug resis 100.0 6.8E-87 1.5E-91 775.6 45.2 566 90-678 127-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 4.6E-53 9.9E-58 410.8 22.1 215 80-305 4-223 (240)
11 COG1125 OpuBA ABC-type proline 100.0 1E-49 2.2E-54 394.6 20.3 218 80-307 3-225 (309)
12 COG1131 CcmA ABC-type multidru 100.0 1.4E-48 3.1E-53 411.4 25.3 220 80-311 6-230 (293)
13 COG1127 Ttg2A ABC-type transpo 100.0 7.7E-49 1.7E-53 386.8 21.2 220 78-307 8-235 (263)
14 COG1135 AbcC ABC-type metal io 100.0 8.7E-49 1.9E-53 398.9 20.1 203 91-305 19-229 (339)
15 COG1120 FepC ABC-type cobalami 100.0 4.2E-48 9.1E-53 393.6 19.3 215 83-306 7-227 (258)
16 COG3842 PotA ABC-type spermidi 100.0 4E-48 8.7E-53 410.0 19.4 230 80-328 7-239 (352)
17 COG1116 TauB ABC-type nitrate/ 100.0 1.3E-47 2.8E-52 383.3 21.3 200 82-294 7-207 (248)
18 COG3839 MalK ABC-type sugar tr 100.0 1.8E-47 3.8E-52 403.1 21.5 215 81-307 6-223 (338)
19 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.6E-47 7.8E-52 384.9 21.8 209 87-307 13-227 (254)
20 COG1136 SalX ABC-type antimicr 100.0 6.1E-47 1.3E-51 378.1 22.5 194 91-296 18-220 (226)
21 COG1118 CysA ABC-type sulfate/ 100.0 3.4E-47 7.4E-52 386.2 20.7 216 82-307 6-227 (345)
22 COG3638 ABC-type phosphate/pho 100.0 2.4E-47 5.1E-52 375.4 18.2 219 81-308 6-238 (258)
23 COG4555 NatA ABC-type Na+ tran 100.0 2.7E-47 5.8E-52 365.5 17.4 216 81-308 4-223 (245)
24 COG1117 PstB ABC-type phosphat 100.0 2.7E-46 5.9E-51 361.9 17.6 231 80-326 9-248 (253)
25 COG2884 FtsE Predicted ATPase 100.0 9.1E-46 2E-50 352.3 20.3 210 80-301 3-220 (223)
26 PRK13537 nodulation ABC transp 100.0 2.6E-45 5.7E-50 389.6 25.4 216 81-308 10-228 (306)
27 COG1137 YhbG ABC-type (unclass 100.0 4.8E-46 1.1E-50 356.5 13.5 219 79-307 5-228 (243)
28 PRK11650 ugpC glycerol-3-phosp 100.0 9.3E-45 2E-49 392.2 24.9 210 85-306 10-223 (356)
29 TIGR03265 PhnT2 putative 2-ami 100.0 1.5E-44 3.2E-49 390.2 25.2 212 84-307 10-224 (353)
30 cd03261 ABC_Org_Solvent_Resist 100.0 1.5E-44 3.3E-49 369.9 23.9 211 84-305 6-224 (235)
31 TIGR02314 ABC_MetN D-methionin 100.0 2.1E-44 4.6E-49 386.8 25.4 204 91-306 18-229 (343)
32 PRK11432 fbpC ferric transport 100.0 2.2E-44 4.8E-49 388.3 25.2 211 84-306 12-225 (351)
33 TIGR03258 PhnT 2-aminoethylpho 100.0 2.2E-44 4.8E-49 389.5 25.1 214 83-306 10-227 (362)
34 PRK13536 nodulation factor exp 100.0 3E-44 6.6E-49 385.9 25.9 218 79-308 42-262 (340)
35 TIGR01188 drrA daunorubicin re 100.0 3.9E-44 8.4E-49 380.4 25.6 210 87-308 2-214 (302)
36 COG1124 DppF ABC-type dipeptid 100.0 1.8E-44 3.9E-49 357.6 20.5 203 92-307 21-231 (252)
37 COG0411 LivG ABC-type branched 100.0 1.2E-44 2.6E-49 359.2 18.8 220 79-307 5-239 (250)
38 PRK10851 sulfate/thiosulfate t 100.0 7.2E-44 1.6E-48 384.9 25.1 213 85-306 9-225 (353)
39 PRK09452 potA putrescine/sperm 100.0 1.1E-43 2.4E-48 385.5 25.4 207 88-306 24-233 (375)
40 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-43 2.3E-48 360.1 23.5 209 84-304 6-218 (220)
41 TIGR01288 nodI ATP-binding ABC 100.0 1.6E-43 3.4E-48 375.9 25.3 212 84-307 10-224 (303)
42 cd03259 ABC_Carb_Solutes_like 100.0 1.2E-43 2.5E-48 357.9 23.0 206 83-300 5-213 (213)
43 TIGR01186 proV glycine betaine 100.0 2.4E-43 5.3E-48 380.6 26.8 208 87-306 2-218 (363)
44 PRK11607 potG putrescine trans 100.0 2E-43 4.4E-48 384.0 25.7 206 89-306 30-238 (377)
45 cd03219 ABC_Mj1267_LivG_branch 100.0 2.4E-43 5.2E-48 361.1 24.6 214 83-305 5-230 (236)
46 cd03269 ABC_putative_ATPase Th 100.0 2.1E-43 4.5E-48 355.3 23.3 204 85-300 7-210 (210)
47 PRK11000 maltose/maltodextrin 100.0 2.2E-43 4.7E-48 383.7 25.1 208 87-306 12-222 (369)
48 COG1122 CbiO ABC-type cobalt t 100.0 1.2E-43 2.7E-48 360.3 21.1 206 91-308 17-229 (235)
49 cd03296 ABC_CysA_sulfate_impor 100.0 3.2E-43 6.9E-48 361.1 24.0 209 88-305 12-224 (239)
50 cd03218 ABC_YhbG The ABC trans 100.0 3.3E-43 7.2E-48 359.1 23.8 211 83-305 5-220 (232)
51 PRK11153 metN DL-methionine tr 100.0 4.4E-43 9.5E-48 378.1 25.5 204 91-306 18-229 (343)
52 TIGR00960 3a0501s02 Type II (G 100.0 2.4E-43 5.3E-48 356.3 21.6 194 91-296 16-216 (216)
53 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.8E-43 1.3E-47 354.6 24.3 200 91-303 17-219 (220)
54 PRK13643 cbiO cobalt transport 100.0 1.5E-42 3.3E-47 365.7 28.4 221 91-324 19-253 (288)
55 cd03260 ABC_PstB_phosphate_tra 100.0 3.2E-43 6.9E-48 358.2 22.3 210 84-304 6-226 (227)
56 cd03258 ABC_MetN_methionine_tr 100.0 5E-43 1.1E-47 358.1 23.8 202 92-305 19-228 (233)
57 TIGR03522 GldA_ABC_ATP gliding 100.0 4.9E-43 1.1E-47 371.7 24.4 211 84-307 8-221 (301)
58 cd03256 ABC_PhnC_transporter A 100.0 4E-43 8.6E-48 360.4 23.0 213 84-305 6-232 (241)
59 COG4152 ABC-type uncharacteriz 100.0 1.5E-43 3.3E-48 348.5 18.8 219 80-310 4-222 (300)
60 cd03301 ABC_MalK_N The N-termi 100.0 5.4E-43 1.2E-47 352.9 23.2 204 85-300 7-213 (213)
61 COG3840 ThiQ ABC-type thiamine 100.0 1.4E-43 3E-48 334.8 17.4 200 95-306 16-218 (231)
62 PRK09536 btuD corrinoid ABC tr 100.0 3.5E-43 7.5E-48 383.9 23.4 214 83-305 8-226 (402)
63 cd03266 ABC_NatA_sodium_export 100.0 5.2E-43 1.1E-47 354.3 22.4 197 92-300 19-218 (218)
64 cd03263 ABC_subfamily_A The AB 100.0 6.6E-43 1.4E-47 354.0 23.0 202 91-305 15-219 (220)
65 cd03224 ABC_TM1139_LivF_branch 100.0 6.6E-43 1.4E-47 354.4 22.4 208 84-305 6-219 (222)
66 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-42 2.4E-47 357.2 23.9 210 85-305 8-223 (240)
67 PRK11264 putative amino-acid A 100.0 1.5E-42 3.2E-47 358.3 24.8 210 85-305 10-231 (250)
68 PRK13637 cbiO cobalt transport 100.0 1.9E-42 4.1E-47 364.8 25.9 215 91-317 20-247 (287)
69 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.4E-42 2.9E-47 357.1 24.0 208 86-305 8-223 (242)
70 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.9E-42 4.1E-47 361.6 25.5 214 81-306 27-249 (269)
71 TIGR02315 ABC_phnC phosphonate 100.0 6.6E-43 1.4E-47 359.4 21.5 213 84-305 7-233 (243)
72 cd03268 ABC_BcrA_bacitracin_re 100.0 9.5E-43 2.1E-47 350.0 22.0 201 84-300 6-208 (208)
73 PRK13651 cobalt transporter AT 100.0 6.8E-42 1.5E-46 363.0 28.7 215 91-317 20-267 (305)
74 PRK11831 putative ABC transpor 100.0 2.4E-42 5.3E-47 360.8 24.7 208 87-305 16-231 (269)
75 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.4E-42 3E-47 351.2 22.1 193 91-296 17-218 (218)
76 PRK13634 cbiO cobalt transport 100.0 3.3E-42 7.2E-47 363.5 24.8 214 91-317 20-248 (290)
77 COG0410 LivF ABC-type branched 100.0 1.4E-42 3E-47 341.9 20.4 215 80-307 5-226 (237)
78 cd03226 ABC_cobalt_CbiO_domain 100.0 2.1E-42 4.5E-47 346.8 22.1 199 83-297 4-205 (205)
79 PRK13647 cbiO cobalt transport 100.0 4.8E-42 1E-46 359.4 25.5 215 91-317 18-239 (274)
80 PRK10895 lipopolysaccharide AB 100.0 2.5E-42 5.4E-47 354.8 22.9 212 83-305 8-224 (241)
81 TIGR00972 3a0107s01c2 phosphat 100.0 3.7E-42 8E-47 354.9 24.2 210 86-305 9-230 (247)
82 PRK09473 oppD oligopeptide tra 100.0 1.5E-41 3.2E-46 364.0 29.5 211 91-306 29-250 (330)
83 TIGR02673 FtsE cell division A 100.0 2.3E-42 5E-47 348.6 21.7 194 90-295 14-214 (214)
84 PRK10619 histidine/lysine/argi 100.0 6.2E-42 1.3E-46 355.3 25.5 214 82-305 9-239 (257)
85 PRK15079 oligopeptide ABC tran 100.0 4.8E-42 1E-46 367.8 25.2 207 91-306 34-250 (331)
86 cd03234 ABCG_White The White s 100.0 7E-42 1.5E-46 348.2 25.0 205 91-300 20-226 (226)
87 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 6.5E-42 1.4E-46 350.7 24.9 211 84-307 7-221 (236)
88 PRK13631 cbiO cobalt transport 100.0 1.9E-41 4.2E-46 361.7 29.2 214 91-317 39-278 (320)
89 PRK13650 cbiO cobalt transport 100.0 6.3E-42 1.4E-46 359.4 24.8 214 91-317 20-242 (279)
90 cd03292 ABC_FtsE_transporter F 100.0 3.9E-42 8.5E-47 346.8 22.1 194 91-296 14-214 (214)
91 cd03264 ABC_drug_resistance_li 100.0 3.8E-42 8.1E-47 346.4 21.9 201 86-300 8-211 (211)
92 PRK13646 cbiO cobalt transport 100.0 1.4E-41 3.1E-46 358.0 27.2 204 91-307 20-235 (286)
93 PRK11614 livF leucine/isoleuci 100.0 4E-42 8.6E-47 352.5 22.2 205 88-306 15-225 (237)
94 PRK11629 lolD lipoprotein tran 100.0 1E-41 2.3E-46 348.6 24.8 199 91-302 22-229 (233)
95 cd03235 ABC_Metallic_Cations A 100.0 5E-42 1.1E-46 346.0 22.2 208 82-300 3-213 (213)
96 PRK09984 phosphonate/organopho 100.0 5.3E-42 1.1E-46 356.9 22.9 212 87-304 13-239 (262)
97 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-41 2.3E-46 350.3 24.4 213 83-305 7-229 (242)
98 PRK10070 glycine betaine trans 100.0 1.1E-41 2.5E-46 371.7 26.0 215 80-306 30-253 (400)
99 PRK13641 cbiO cobalt transport 100.0 8.7E-42 1.9E-46 359.8 24.2 203 91-306 20-233 (287)
100 cd03225 ABC_cobalt_CbiO_domain 100.0 5.8E-42 1.3E-46 344.9 21.8 201 83-295 4-211 (211)
101 PRK11124 artP arginine transpo 100.0 8.5E-42 1.8E-46 351.1 23.5 205 88-304 12-227 (242)
102 PRK10908 cell division protein 100.0 8.8E-42 1.9E-46 346.5 23.2 197 90-298 14-217 (222)
103 PRK11022 dppD dipeptide transp 100.0 1.4E-41 3E-46 363.9 25.8 211 91-306 20-242 (326)
104 PRK14268 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 353.4 24.5 212 87-305 21-240 (258)
105 PRK13638 cbiO cobalt transport 100.0 1.1E-41 2.5E-46 356.1 24.4 209 86-306 9-224 (271)
106 PRK14247 phosphate ABC transpo 100.0 1.2E-41 2.7E-46 351.5 24.4 215 87-305 12-232 (250)
107 PRK14273 phosphate ABC transpo 100.0 1.3E-41 2.8E-46 352.3 24.3 213 87-305 16-236 (254)
108 PRK11248 tauB taurine transpor 100.0 1.2E-41 2.5E-46 352.9 23.9 206 85-303 8-216 (255)
109 cd03262 ABC_HisP_GlnQ_permease 100.0 6.7E-42 1.4E-46 344.9 21.5 202 84-296 6-213 (213)
110 PRK13636 cbiO cobalt transport 100.0 1.6E-41 3.4E-46 357.2 25.2 215 91-317 19-244 (283)
111 TIGR03005 ectoine_ehuA ectoine 100.0 1.3E-41 2.9E-46 351.8 24.2 210 85-305 7-234 (252)
112 PRK14242 phosphate transporter 100.0 1.5E-41 3.3E-46 351.5 24.6 212 88-305 16-235 (253)
113 PRK14267 phosphate ABC transpo 100.0 1.4E-41 3.1E-46 351.7 24.3 215 88-306 14-236 (253)
114 PRK13548 hmuV hemin importer A 100.0 9.6E-42 2.1E-46 354.2 22.9 210 85-306 9-229 (258)
115 TIGR01978 sufC FeS assembly AT 100.0 1.5E-41 3.2E-46 349.2 23.9 215 83-305 5-232 (243)
116 cd03257 ABC_NikE_OppD_transpor 100.0 1.1E-41 2.3E-46 346.8 22.6 198 92-300 19-228 (228)
117 TIGR03415 ABC_choXWV_ATP choli 100.0 2.3E-41 4.9E-46 367.0 26.5 212 83-306 29-253 (382)
118 PRK11300 livG leucine/isoleuci 100.0 1.6E-41 3.5E-46 351.6 24.3 211 86-305 13-241 (255)
119 PRK13644 cbiO cobalt transport 100.0 1.4E-41 3E-46 356.0 23.1 203 91-306 15-223 (274)
120 TIGR03740 galliderm_ABC gallid 100.0 2E-41 4.3E-46 344.1 23.6 205 84-304 6-210 (223)
121 PRK11231 fecE iron-dicitrate t 100.0 1E-41 2.2E-46 353.3 21.9 211 86-305 10-225 (255)
122 PRK11247 ssuB aliphatic sulfon 100.0 1.3E-41 2.8E-46 352.6 22.6 196 89-303 23-219 (257)
123 COG0444 DppD ABC-type dipeptid 100.0 2.4E-41 5.2E-46 349.2 24.2 211 91-306 18-242 (316)
124 PRK13635 cbiO cobalt transport 100.0 2.5E-41 5.5E-46 354.8 24.6 214 91-317 20-242 (279)
125 PRK13649 cbiO cobalt transport 100.0 3.6E-41 7.7E-46 354.0 25.5 203 91-306 20-233 (280)
126 PRK13640 cbiO cobalt transport 100.0 2.9E-41 6.2E-46 355.0 24.7 207 91-307 20-232 (282)
127 TIGR02211 LolD_lipo_ex lipopro 100.0 2.4E-41 5.3E-46 342.8 23.0 194 91-297 18-220 (221)
128 PRK14245 phosphate ABC transpo 100.0 3.5E-41 7.5E-46 348.3 24.5 213 87-306 12-233 (250)
129 TIGR01257 rim_protein retinal- 100.0 4.4E-39 9.5E-44 400.0 47.7 219 79-310 929-1152(2272)
130 PRK13652 cbiO cobalt transport 100.0 2.9E-41 6.3E-46 354.1 24.0 204 91-306 17-226 (277)
131 TIGR02142 modC_ABC molybdenum 100.0 3.1E-41 6.7E-46 365.4 24.9 208 84-307 5-221 (354)
132 PRK10575 iron-hydroxamate tran 100.0 2E-41 4.4E-46 353.1 22.5 213 84-305 17-235 (265)
133 PRK14256 phosphate ABC transpo 100.0 4.1E-41 9E-46 348.1 24.6 215 86-305 12-234 (252)
134 PRK13639 cbiO cobalt transport 100.0 5.7E-41 1.2E-45 351.6 25.8 213 91-315 15-237 (275)
135 PRK15093 antimicrobial peptide 100.0 4.2E-41 9.1E-46 361.0 25.4 213 91-306 20-247 (330)
136 PRK14269 phosphate ABC transpo 100.0 4.4E-41 9.5E-46 346.8 24.4 219 82-305 6-228 (246)
137 TIGR03873 F420-0_ABC_ATP propo 100.0 2.4E-41 5.2E-46 350.8 22.5 213 84-305 7-224 (256)
138 TIGR02769 nickel_nikE nickel i 100.0 2.9E-41 6.4E-46 351.9 23.3 206 90-306 23-239 (265)
139 PRK10744 pstB phosphate transp 100.0 4.5E-41 9.8E-46 349.5 23.9 210 90-305 25-242 (260)
140 PRK14241 phosphate transporter 100.0 5.5E-41 1.2E-45 348.5 24.5 216 86-306 12-241 (258)
141 PRK11308 dppF dipeptide transp 100.0 5.4E-41 1.2E-45 359.3 24.9 205 91-306 28-243 (327)
142 PRK14244 phosphate ABC transpo 100.0 6E-41 1.3E-45 346.7 24.4 217 84-305 11-235 (251)
143 PRK10253 iron-enterobactin tra 100.0 2.5E-41 5.5E-46 352.4 21.6 210 88-306 17-232 (265)
144 PRK11144 modC molybdate transp 100.0 4.5E-41 9.7E-46 363.8 24.2 203 84-306 6-217 (352)
145 PRK14274 phosphate ABC transpo 100.0 6.7E-41 1.5E-45 348.0 24.6 217 83-305 17-241 (259)
146 COG4175 ProV ABC-type proline/ 100.0 1.2E-41 2.6E-46 346.0 18.4 207 88-306 38-253 (386)
147 PRK13633 cobalt transporter AT 100.0 6.5E-41 1.4E-45 352.0 24.6 214 91-317 23-246 (280)
148 TIGR03410 urea_trans_UrtE urea 100.0 3.6E-41 7.7E-46 343.8 22.0 207 84-305 6-219 (230)
149 PRK13648 cbiO cobalt transport 100.0 8.4E-41 1.8E-45 349.2 25.3 214 91-317 22-244 (269)
150 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.1E-41 8.8E-46 338.9 22.0 193 96-300 16-211 (211)
151 cd03233 ABC_PDR_domain1 The pl 100.0 1E-40 2.2E-45 334.1 24.6 196 45-300 3-202 (202)
152 PRK14235 phosphate transporter 100.0 7.6E-41 1.7E-45 349.2 24.6 213 88-305 29-249 (267)
153 PRK14239 phosphate transporter 100.0 7.7E-41 1.7E-45 346.0 24.0 212 88-305 15-234 (252)
154 TIGR00968 3a0106s01 sulfate AB 100.0 8E-41 1.7E-45 343.0 23.8 210 85-306 7-219 (237)
155 cd03297 ABC_ModC_molybdenum_tr 100.0 7.9E-41 1.7E-45 337.6 23.3 201 83-300 5-214 (214)
156 PRK13632 cbiO cobalt transport 100.0 5.6E-41 1.2E-45 350.9 23.0 203 91-306 22-230 (271)
157 cd03300 ABC_PotA_N PotA is an 100.0 1.2E-40 2.5E-45 340.7 24.8 209 85-305 7-218 (232)
158 cd03267 ABC_NatA_like Similar 100.0 1.1E-40 2.4E-45 341.8 24.3 203 86-300 29-236 (236)
159 COG4559 ABC-type hemin transpo 100.0 4.6E-41 1E-45 325.0 19.9 206 90-307 13-230 (259)
160 PRK13549 xylose transporter AT 100.0 4.8E-41 1E-45 381.0 23.3 212 87-305 14-230 (506)
161 PRK10771 thiQ thiamine transpo 100.0 7.6E-41 1.7E-45 341.9 22.4 199 96-306 17-218 (232)
162 cd03299 ABC_ModC_like Archeal 100.0 1.7E-40 3.7E-45 340.1 24.8 210 83-305 5-217 (235)
163 PRK13645 cbiO cobalt transport 100.0 9.3E-41 2E-45 352.4 23.4 202 92-306 25-239 (289)
164 PRK14237 phosphate transporter 100.0 1.6E-40 3.5E-45 346.7 24.9 214 86-305 28-249 (267)
165 PRK14270 phosphate ABC transpo 100.0 1.3E-40 2.8E-45 344.2 23.9 213 87-305 13-233 (251)
166 PRK15112 antimicrobial peptide 100.0 1.2E-40 2.5E-45 347.7 23.7 204 91-305 26-237 (267)
167 PRK10584 putative ABC transpor 100.0 1.4E-40 3.1E-45 338.9 23.7 194 92-298 24-226 (228)
168 PRK14250 phosphate ABC transpo 100.0 8E-41 1.7E-45 343.8 22.1 199 90-305 15-219 (241)
169 PRK14272 phosphate ABC transpo 100.0 1.7E-40 3.6E-45 343.5 24.4 215 87-306 13-235 (252)
170 PRK14262 phosphate ABC transpo 100.0 1.7E-40 3.7E-45 343.1 24.4 214 87-306 12-233 (250)
171 PRK13547 hmuV hemin importer A 100.0 1E-40 2.2E-45 348.8 22.1 215 85-305 8-242 (272)
172 PRK14240 phosphate transporter 100.0 2.5E-40 5.4E-45 341.9 24.8 213 87-305 12-232 (250)
173 TIGR01184 ntrCD nitrate transp 100.0 1.4E-40 3E-45 339.7 22.4 200 94-304 1-201 (230)
174 TIGR01277 thiQ thiamine ABC tr 100.0 2.2E-40 4.7E-45 334.2 23.6 197 93-301 13-212 (213)
175 PRK14253 phosphate ABC transpo 100.0 2.7E-40 5.9E-45 341.3 24.7 216 84-305 9-231 (249)
176 PRK10762 D-ribose transporter 100.0 1.1E-40 2.4E-45 377.6 23.6 212 85-305 11-228 (501)
177 PRK14248 phosphate ABC transpo 100.0 2.6E-40 5.6E-45 345.3 24.1 215 85-305 28-250 (268)
178 TIGR03608 L_ocin_972_ABC putat 100.0 2.2E-40 4.8E-45 332.0 22.6 196 83-291 3-206 (206)
179 PRK14249 phosphate ABC transpo 100.0 3.4E-40 7.3E-45 341.1 24.4 213 87-305 13-233 (251)
180 PRK09700 D-allose transporter 100.0 1.4E-40 3.1E-45 377.6 23.6 214 83-305 10-232 (510)
181 PRK11701 phnK phosphonate C-P 100.0 4.9E-40 1.1E-44 341.3 25.2 207 88-305 16-239 (258)
182 PRK14260 phosphate ABC transpo 100.0 2.9E-40 6.2E-45 343.3 23.5 212 88-305 17-241 (259)
183 PRK14251 phosphate ABC transpo 100.0 4E-40 8.6E-45 340.5 23.9 210 90-305 16-233 (251)
184 PRK14259 phosphate ABC transpo 100.0 3E-40 6.4E-45 345.0 23.0 213 87-307 22-253 (269)
185 TIGR02770 nickel_nikD nickel i 100.0 4.7E-40 1E-44 335.7 23.9 208 93-306 1-214 (230)
186 PRK13642 cbiO cobalt transport 100.0 4.5E-40 9.8E-45 345.1 24.4 214 91-317 20-242 (277)
187 PRK14255 phosphate ABC transpo 100.0 6E-40 1.3E-44 339.4 24.7 215 85-305 12-234 (252)
188 PRK14261 phosphate ABC transpo 100.0 6E-40 1.3E-44 339.7 24.6 212 88-305 16-235 (253)
189 KOG0058 Peptide exporter, ABC 100.0 5.8E-41 1.3E-45 374.0 18.0 218 45-307 465-691 (716)
190 PRK14258 phosphate ABC transpo 100.0 5.9E-40 1.3E-44 341.4 24.4 212 90-306 19-244 (261)
191 PRK14271 phosphate ABC transpo 100.0 7E-40 1.5E-44 343.4 24.9 213 88-306 31-250 (276)
192 PRK14236 phosphate transporter 100.0 6.5E-40 1.4E-44 343.1 24.4 210 90-305 37-254 (272)
193 COG4598 HisP ABC-type histidin 100.0 5.9E-41 1.3E-45 315.9 14.7 216 79-305 7-239 (256)
194 PRK14275 phosphate ABC transpo 100.0 6.5E-40 1.4E-44 345.4 24.3 219 81-305 42-268 (286)
195 COG1123 ATPase components of v 100.0 1.1E-39 2.4E-44 359.2 27.0 212 91-308 22-245 (539)
196 PRK14246 phosphate ABC transpo 100.0 1.1E-39 2.4E-44 338.5 25.5 223 79-306 11-240 (257)
197 PRK14263 phosphate ABC transpo 100.0 8.6E-40 1.9E-44 340.1 24.3 215 84-306 14-244 (261)
198 PRK10982 galactose/methyl gala 100.0 6.7E-40 1.4E-44 370.4 25.2 214 83-305 3-221 (491)
199 PRK15439 autoinducer 2 ABC tra 100.0 4.5E-40 9.8E-45 373.2 23.9 202 88-305 21-227 (510)
200 COG2274 SunT ABC-type bacterio 100.0 1.3E-40 2.8E-45 384.0 19.7 203 91-308 486-697 (709)
201 PRK14238 phosphate transporter 100.0 9.2E-40 2E-44 341.7 23.8 222 78-305 24-253 (271)
202 cd03232 ABC_PDR_domain2 The pl 100.0 6E-40 1.3E-44 325.9 21.1 172 91-300 20-192 (192)
203 TIGR02323 CP_lyasePhnK phospho 100.0 1.5E-39 3.3E-44 336.6 24.9 211 84-305 9-236 (253)
204 COG4988 CydD ABC-type transpor 100.0 1.2E-39 2.5E-44 357.6 24.9 219 40-307 315-543 (559)
205 cd03252 ABCC_Hemolysin The ABC 100.0 2.8E-40 6E-45 338.7 18.6 200 91-307 15-225 (237)
206 PRK14265 phosphate ABC transpo 100.0 3.7E-39 8E-44 337.7 27.3 209 90-306 32-257 (274)
207 PRK10418 nikD nickel transport 100.0 1.3E-39 2.8E-44 337.4 23.6 207 91-305 16-228 (254)
208 CHL00131 ycf16 sulfate ABC tra 100.0 2E-39 4.3E-44 335.4 24.7 211 87-305 16-239 (252)
209 COG4181 Predicted ABC-type tra 100.0 6.2E-40 1.4E-44 307.0 18.6 197 89-298 21-226 (228)
210 PRK10419 nikE nickel transport 100.0 1.2E-39 2.6E-44 340.3 23.0 205 91-306 25-240 (268)
211 PRK14266 phosphate ABC transpo 100.0 1.5E-39 3.2E-44 336.0 23.3 212 88-305 13-232 (250)
212 PRK14254 phosphate ABC transpo 100.0 1.8E-39 3.8E-44 341.8 24.1 208 90-305 51-267 (285)
213 TIGR02982 heterocyst_DevA ABC 100.0 1.2E-39 2.7E-44 330.4 22.1 194 91-296 18-219 (220)
214 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-39 2.9E-44 368.8 24.4 215 84-304 7-227 (500)
215 PRK03695 vitamin B12-transport 100.0 2.2E-39 4.8E-44 334.5 23.9 199 93-305 11-220 (248)
216 COG1123 ATPase components of v 100.0 1.2E-39 2.6E-44 358.9 23.1 207 90-306 303-518 (539)
217 cd03251 ABCC_MsbA MsbA is an e 100.0 3.7E-40 8.1E-45 337.0 17.9 199 92-307 16-225 (234)
218 PRK14257 phosphate ABC transpo 100.0 2.7E-39 5.9E-44 346.3 25.0 209 91-306 95-312 (329)
219 PRK11174 cysteine/glutathione 100.0 8.1E-40 1.7E-44 377.7 22.5 199 91-307 363-572 (588)
220 COG4525 TauB ABC-type taurine 100.0 1.2E-39 2.6E-44 311.1 19.6 209 87-308 12-225 (259)
221 PRK11288 araG L-arabinose tran 100.0 1.4E-39 3E-44 368.6 23.8 207 87-302 13-224 (501)
222 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.7E-39 7.9E-44 328.0 23.9 201 80-300 24-224 (224)
223 PRK14243 phosphate transporter 100.0 2.4E-39 5.3E-44 337.3 23.1 216 83-306 15-247 (264)
224 PRK09580 sufC cysteine desulfu 100.0 4.8E-39 1E-43 331.7 25.0 221 85-314 8-241 (248)
225 cd03213 ABCG_EPDR ABCG transpo 100.0 1.9E-39 4E-44 322.9 21.1 170 91-300 22-194 (194)
226 COG1129 MglA ABC-type sugar tr 100.0 1.8E-39 3.9E-44 355.3 22.7 215 78-301 8-228 (500)
227 PRK15056 manganese/iron transp 100.0 1.8E-39 4E-44 339.6 21.8 205 91-305 20-228 (272)
228 TIGR01257 rim_protein retinal- 100.0 1.9E-39 4.1E-44 403.2 25.2 222 77-310 1936-2162(2272)
229 PRK10261 glutathione transport 100.0 3.2E-39 6.9E-44 373.9 25.2 205 91-306 337-552 (623)
230 PRK14252 phosphate ABC transpo 100.0 6E-39 1.3E-43 334.5 24.4 210 90-305 28-247 (265)
231 TIGR03269 met_CoM_red_A2 methy 100.0 4E-39 8.8E-44 366.5 24.9 214 84-309 6-260 (520)
232 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 8.8E-40 1.9E-44 335.2 17.4 201 91-308 16-227 (238)
233 PRK13543 cytochrome c biogenes 100.0 4.1E-39 8.9E-44 325.3 21.3 194 85-293 18-212 (214)
234 PRK11176 lipid transporter ATP 100.0 2.8E-39 6.1E-44 372.8 22.6 201 91-307 356-567 (582)
235 PRK14264 phosphate ABC transpo 100.0 7.9E-39 1.7E-43 340.0 24.3 214 88-305 55-287 (305)
236 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-39 3.2E-44 329.5 17.8 194 91-300 17-220 (220)
237 cd03231 ABC_CcmA_heme_exporter 100.0 3.4E-39 7.4E-44 322.8 20.0 190 84-291 6-198 (201)
238 PRK13538 cytochrome c biogenes 100.0 3.1E-39 6.7E-44 323.7 19.7 191 86-291 9-202 (204)
239 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-39 3E-44 331.8 17.2 199 91-306 16-225 (229)
240 PRK10247 putative ABC transpor 100.0 3.2E-39 6.9E-44 328.6 19.7 201 85-301 14-221 (225)
241 PRK15134 microcin C ABC transp 100.0 7.9E-39 1.7E-43 364.8 25.2 205 91-306 299-514 (529)
242 cd03230 ABC_DR_subfamily_A Thi 100.0 4.6E-39 1E-43 314.2 19.7 162 87-296 9-173 (173)
243 TIGR03269 met_CoM_red_A2 methy 100.0 1E-38 2.2E-43 363.2 25.6 220 80-307 281-517 (520)
244 COG1132 MdlB ABC-type multidru 100.0 3.3E-39 7.1E-44 371.0 21.4 203 90-307 341-552 (567)
245 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.7E-39 8E-44 378.3 22.3 197 91-307 466-673 (686)
246 PRK13549 xylose transporter AT 100.0 5.9E-39 1.3E-43 364.0 23.1 219 79-305 260-492 (506)
247 PRK10790 putative multidrug tr 100.0 1.2E-38 2.5E-43 368.3 25.7 198 91-306 354-562 (592)
248 PRK15134 microcin C ABC transp 100.0 1.1E-38 2.3E-43 363.7 25.1 211 91-306 22-245 (529)
249 PRK09544 znuC high-affinity zi 100.0 9.8E-39 2.1E-43 330.2 22.0 194 85-305 11-207 (251)
250 KOG0055 Multidrug/pheromone ex 100.0 4.9E-39 1.1E-43 376.6 22.2 219 44-307 349-576 (1228)
251 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.8E-39 1E-43 378.8 21.9 198 91-307 492-700 (710)
252 cd03217 ABC_FeS_Assembly ABC-t 100.0 8.7E-39 1.9E-43 319.6 20.3 183 85-311 7-197 (200)
253 PRK10261 glutathione transport 100.0 9.3E-39 2E-43 370.0 23.7 208 91-306 29-257 (623)
254 cd03253 ABCC_ATM1_transporter 100.0 3.9E-39 8.4E-44 329.9 18.2 199 91-306 14-223 (236)
255 KOG0057 Mitochondrial Fe/S clu 100.0 4.2E-39 9.1E-44 348.1 19.0 199 91-307 365-574 (591)
256 COG4161 ArtP ABC-type arginine 100.0 5.9E-39 1.3E-43 297.5 17.1 212 82-304 6-227 (242)
257 COG4604 CeuD ABC-type enteroch 100.0 6.4E-40 1.4E-44 313.5 11.0 217 81-307 4-225 (252)
258 TIGR01166 cbiO cobalt transpor 100.0 1.3E-38 2.8E-43 315.6 20.6 178 89-278 3-188 (190)
259 PRK09700 D-allose transporter 100.0 1.2E-38 2.5E-43 361.9 22.8 213 79-302 266-493 (510)
260 PRK13546 teichoic acids export 100.0 1.4E-37 3E-42 323.7 28.6 198 89-307 35-232 (264)
261 PRK11160 cysteine/glutathione 100.0 1.1E-38 2.5E-43 366.7 22.3 200 91-307 353-562 (574)
262 TIGR01189 ccmA heme ABC export 100.0 1.3E-38 2.8E-43 317.8 19.6 189 84-290 6-197 (198)
263 PRK13545 tagH teichoic acids e 100.0 8.8E-38 1.9E-42 345.4 27.5 198 91-309 37-234 (549)
264 cd03229 ABC_Class3 This class 100.0 1.2E-38 2.5E-43 312.8 18.3 165 85-295 7-178 (178)
265 TIGR02633 xylG D-xylose ABC tr 100.0 2E-38 4.4E-43 359.2 23.0 217 79-303 258-488 (500)
266 cd03215 ABC_Carb_Monos_II This 100.0 1.7E-38 3.6E-43 312.8 18.9 167 82-296 8-182 (182)
267 COG4148 ModC ABC-type molybdat 100.0 2.9E-39 6.3E-44 323.5 13.6 194 96-307 16-218 (352)
268 TIGR01193 bacteriocin_ABC ABC- 100.0 1.2E-38 2.7E-43 375.1 21.2 200 91-307 487-697 (708)
269 TIGR03771 anch_rpt_ABC anchore 100.0 4.1E-38 8.9E-43 320.0 21.9 196 99-305 1-199 (223)
270 TIGR02324 CP_lyasePhnL phospho 100.0 5.6E-38 1.2E-42 318.9 22.6 190 91-292 21-223 (224)
271 TIGR00958 3a01208 Conjugate Tr 100.0 2.1E-38 4.5E-43 372.7 22.2 198 91-307 494-702 (711)
272 cd03244 ABCC_MRP_domain2 Domai 100.0 3.2E-38 7E-43 319.9 20.7 193 91-301 17-220 (221)
273 PRK10938 putative molybdenum t 100.0 1.3E-38 2.8E-43 359.9 19.7 200 87-306 12-223 (490)
274 PRK13539 cytochrome c biogenes 100.0 1.9E-38 4.2E-43 318.8 18.6 190 86-293 10-200 (207)
275 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.5E-38 3.2E-43 332.4 18.4 199 91-307 17-225 (275)
276 TIGR03375 type_I_sec_LssB type 100.0 2.1E-38 4.6E-43 372.3 21.6 201 91-308 478-689 (694)
277 COG0396 sufC Cysteine desulfur 100.0 2.2E-37 4.8E-42 303.8 24.9 219 91-317 17-243 (251)
278 COG3845 ABC-type uncharacteriz 100.0 3.2E-38 6.8E-43 338.9 20.3 213 80-301 6-223 (501)
279 PRK13657 cyclic beta-1,2-gluca 100.0 5.5E-38 1.2E-42 362.3 23.6 199 91-306 348-557 (588)
280 TIGR01842 type_I_sec_PrtD type 100.0 5.1E-38 1.1E-42 359.3 22.6 202 91-306 331-541 (544)
281 cd03248 ABCC_TAP TAP, the Tran 100.0 1.1E-38 2.4E-43 324.5 15.3 191 91-296 27-226 (226)
282 PRK13540 cytochrome c biogenes 100.0 4.1E-38 9E-43 314.6 18.6 184 87-288 10-196 (200)
283 TIGR02203 MsbA_lipidA lipid A 100.0 5.3E-38 1.1E-42 361.4 22.0 200 91-306 345-555 (571)
284 cd03247 ABCC_cytochrome_bd The 100.0 4.1E-38 8.8E-43 308.9 18.0 160 92-300 16-178 (178)
285 cd03246 ABCC_Protease_Secretio 100.0 4.3E-38 9.4E-43 307.4 18.0 155 91-296 15-173 (173)
286 PRK10762 D-ribose transporter 100.0 1.3E-37 2.7E-42 352.7 23.1 205 92-305 266-482 (501)
287 PRK11288 araG L-arabinose tran 100.0 1E-37 2.2E-42 353.4 21.8 204 92-304 267-482 (501)
288 COG4987 CydC ABC-type transpor 100.0 1.7E-38 3.7E-43 343.2 13.8 200 91-307 351-561 (573)
289 cd03214 ABC_Iron-Siderophores_ 100.0 5.1E-38 1.1E-42 308.8 16.0 171 84-300 5-180 (180)
290 TIGR01187 potA spermidine/putr 100.0 2.8E-37 6.2E-42 330.8 22.9 186 109-306 1-189 (325)
291 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.9E-37 4.2E-42 311.3 20.2 183 91-302 21-207 (207)
292 cd03288 ABCC_SUR2 The SUR doma 100.0 7.8E-38 1.7E-42 324.7 17.7 199 91-307 34-243 (257)
293 PRK15439 autoinducer 2 ABC tra 100.0 2E-37 4.3E-42 351.6 22.3 203 93-304 278-489 (510)
294 PRK10789 putative multidrug tr 100.0 2.4E-37 5.2E-42 355.5 22.1 200 91-307 328-538 (569)
295 TIGR02204 MsbA_rel ABC transpo 100.0 2.9E-37 6.4E-42 355.6 22.8 199 91-306 353-562 (576)
296 cd03250 ABCC_MRP_domain1 Domai 100.0 2.1E-37 4.5E-42 310.4 18.8 178 92-295 19-204 (204)
297 TIGR01846 type_I_sec_HlyB type 100.0 2E-37 4.3E-42 364.1 21.7 200 91-307 470-680 (694)
298 COG4172 ABC-type uncharacteriz 100.0 1.2E-36 2.6E-41 317.5 24.3 234 41-306 272-515 (534)
299 TIGR01192 chvA glucan exporter 100.0 9.7E-37 2.1E-41 351.3 25.7 202 91-307 348-558 (585)
300 PTZ00265 multidrug resistance 100.0 1.5E-37 3.2E-42 386.0 20.0 220 45-307 1165-1452(1466)
301 KOG0055 Multidrug/pheromone ex 100.0 3.3E-37 7.1E-42 361.3 21.3 220 45-307 987-1213(1228)
302 cd03290 ABCC_SUR1_N The SUR do 100.0 9.3E-37 2E-41 308.8 20.7 189 90-295 13-218 (218)
303 COG4619 ABC-type uncharacteriz 100.0 7.9E-38 1.7E-42 292.0 11.5 195 88-296 13-212 (223)
304 cd03228 ABCC_MRP_Like The MRP 100.0 4E-37 8.7E-42 300.0 16.8 152 92-295 16-171 (171)
305 COG4618 ArpD ABC-type protease 100.0 4.1E-37 8.8E-42 329.6 17.6 207 90-310 348-563 (580)
306 cd03216 ABC_Carb_Monos_I This 100.0 1.2E-36 2.6E-41 294.4 19.2 151 85-298 7-162 (163)
307 PRK15177 Vi polysaccharide exp 100.0 2E-36 4.4E-41 305.5 20.9 195 92-311 1-196 (213)
308 PRK13541 cytochrome c biogenes 100.0 1.3E-36 2.9E-41 302.5 19.1 182 88-288 11-192 (195)
309 COG1119 ModF ABC-type molybden 100.0 3.5E-37 7.6E-42 305.9 14.2 214 79-301 32-256 (257)
310 PRK15064 ABC transporter ATP-b 100.0 2.1E-36 4.6E-41 344.9 22.1 205 85-307 8-242 (530)
311 cd03223 ABCD_peroxisomal_ALDP 100.0 2.9E-36 6.4E-41 292.6 19.1 150 91-294 14-163 (166)
312 cd03237 ABC_RNaseL_inhibitor_d 100.0 1E-35 2.2E-40 306.6 23.8 188 93-304 9-204 (246)
313 cd03291 ABCC_CFTR1 The CFTR su 100.0 6.8E-36 1.5E-40 313.5 22.5 189 91-306 50-246 (282)
314 PRK10982 galactose/methyl gala 100.0 4.3E-36 9.3E-41 339.4 22.0 213 79-302 251-475 (491)
315 PRK11819 putative ABC transpor 100.0 5.7E-36 1.2E-40 343.0 23.2 196 90-305 19-248 (556)
316 PRK10535 macrolide transporter 100.0 8.8E-36 1.9E-40 346.5 24.9 203 91-306 21-231 (648)
317 TIGR02868 CydC thiol reductant 100.0 1.6E-36 3.4E-41 346.0 17.8 172 91-277 348-529 (529)
318 PRK10938 putative molybdenum t 100.0 3.5E-36 7.6E-41 340.1 20.0 214 78-300 260-485 (490)
319 PLN03232 ABC transporter C fam 100.0 3.7E-36 8.1E-41 376.2 21.9 199 91-307 1249-1458(1495)
320 PLN03130 ABC transporter C fam 100.0 4.4E-36 9.5E-41 376.0 22.4 199 91-307 1252-1461(1622)
321 PRK15064 ABC transporter ATP-b 100.0 6.3E-36 1.4E-40 341.0 21.6 202 78-306 319-524 (530)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.9E-36 2.1E-40 340.8 22.3 198 90-307 17-248 (552)
323 COG4674 Uncharacterized ABC-ty 100.0 1.9E-36 4.2E-41 289.2 13.5 214 82-305 9-233 (249)
324 COG4586 ABC-type uncharacteriz 100.0 3E-36 6.5E-41 301.5 15.4 209 90-310 36-249 (325)
325 TIGR02857 CydD thiol reductant 100.0 4.4E-36 9.6E-41 342.4 18.6 184 91-291 335-529 (529)
326 PRK10522 multidrug transporter 100.0 1.7E-35 3.8E-40 338.6 23.0 188 91-299 336-530 (547)
327 COG4172 ABC-type uncharacteriz 100.0 4E-35 8.6E-40 306.1 21.7 212 90-306 22-246 (534)
328 KOG0056 Heavy metal exporter H 100.0 2.5E-36 5.4E-41 319.8 12.4 205 90-307 550-761 (790)
329 PTZ00265 multidrug resistance 100.0 3.3E-35 7.1E-40 365.0 24.1 197 91-294 398-655 (1466)
330 PTZ00243 ABC transporter; Prov 100.0 2.8E-35 6.2E-40 368.2 23.3 199 91-307 1323-1533(1560)
331 TIGR00957 MRP_assoc_pro multi 100.0 2.6E-35 5.5E-40 369.2 22.9 199 91-307 1299-1508(1522)
332 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.3E-35 9.3E-40 335.8 22.7 191 91-299 355-551 (555)
333 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.7E-35 5.7E-40 304.9 18.9 198 83-300 5-220 (255)
334 COG4608 AppF ABC-type oligopep 100.0 3.3E-35 7.1E-40 297.7 18.1 173 91-307 26-199 (268)
335 PRK11819 putative ABC transpor 100.0 8.1E-35 1.7E-39 333.5 22.7 202 78-303 324-529 (556)
336 PRK13409 putative ATPase RIL; 100.0 7.7E-35 1.7E-39 333.7 21.9 196 79-302 341-537 (590)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-34 3.1E-39 331.3 23.2 202 78-303 322-527 (552)
338 TIGR01271 CFTR_protein cystic 100.0 1.7E-34 3.6E-39 360.9 24.1 198 91-307 1232-1440(1490)
339 PRK10636 putative ABC transpor 100.0 2.3E-34 5E-39 333.9 22.0 202 78-307 312-517 (638)
340 cd03222 ABC_RNaseL_inhibitor T 100.0 2.8E-34 6.2E-39 280.7 18.2 153 82-303 4-159 (177)
341 KOG0059 Lipid exporter ABCA1 a 100.0 1.2E-34 2.5E-39 346.2 18.8 222 77-310 563-790 (885)
342 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 5.6E-34 1.2E-38 270.2 17.7 138 85-295 7-144 (144)
343 cd03238 ABC_UvrA The excision 100.0 1.5E-33 3.3E-38 275.3 20.3 160 90-299 7-169 (176)
344 COG1101 PhnK ABC-type uncharac 100.0 5.4E-34 1.2E-38 276.6 15.8 203 89-300 17-231 (263)
345 PRK11147 ABC transporter ATPas 100.0 1.2E-33 2.5E-38 328.4 21.8 203 78-304 319-525 (635)
346 PRK10636 putative ABC transpor 100.0 1.2E-33 2.7E-38 327.8 21.7 203 83-305 6-234 (638)
347 PLN03232 ABC transporter C fam 100.0 2.2E-33 4.8E-38 351.3 23.9 191 91-307 630-828 (1495)
348 COG1134 TagH ABC-type polysacc 100.0 5.1E-33 1.1E-37 276.7 21.5 206 87-312 36-241 (249)
349 COG4136 ABC-type uncharacteriz 100.0 8.6E-34 1.9E-38 260.4 14.3 183 87-278 11-196 (213)
350 COG5265 ATM1 ABC-type transpor 100.0 4.3E-34 9.2E-39 300.4 13.9 203 90-307 275-486 (497)
351 PLN03073 ABC transporter F fam 100.0 5.3E-33 1.1E-37 324.2 23.8 203 79-307 509-714 (718)
352 PLN03130 ABC transporter C fam 100.0 4.3E-33 9.3E-38 349.2 23.2 190 91-307 630-828 (1622)
353 TIGR00954 3a01203 Peroxysomal 100.0 2.6E-33 5.6E-38 326.2 19.0 185 91-293 465-653 (659)
354 PRK11147 ABC transporter ATPas 100.0 8.1E-33 1.8E-37 321.3 22.5 199 85-305 10-241 (635)
355 COG4133 CcmA ABC-type transpor 100.0 6E-33 1.3E-37 264.8 16.6 184 82-279 6-192 (209)
356 PRK13409 putative ATPase RIL; 100.0 5.4E-33 1.2E-37 318.6 19.2 190 82-294 77-287 (590)
357 COG4107 PhnK ABC-type phosphon 100.0 7.3E-33 1.6E-37 259.9 15.8 216 78-307 6-241 (258)
358 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.5E-32 5.5E-37 262.3 18.1 147 86-295 7-157 (157)
359 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-31 2.9E-36 335.8 25.9 195 91-307 651-850 (1522)
360 COG4167 SapF ABC-type antimicr 100.0 1.5E-31 3.2E-36 253.0 19.4 207 90-306 25-238 (267)
361 TIGR01271 CFTR_protein cystic 100.0 3.7E-31 8.1E-36 331.0 24.6 192 90-306 438-635 (1490)
362 PTZ00243 ABC transporter; Prov 100.0 3.7E-31 8.1E-36 331.3 23.1 195 88-306 670-869 (1560)
363 COG0488 Uup ATPase components 100.0 1.8E-31 3.9E-36 299.3 18.2 203 82-304 7-237 (530)
364 cd03270 ABC_UvrA_I The excisio 100.0 1.5E-30 3.3E-35 265.0 20.7 198 90-300 7-226 (226)
365 PLN03073 ABC transporter F fam 100.0 2.3E-31 5.1E-36 310.4 15.4 214 78-305 177-429 (718)
366 cd03271 ABC_UvrA_II The excisi 100.0 1.8E-29 3.9E-34 260.9 20.4 196 91-302 8-261 (261)
367 COG4778 PhnL ABC-type phosphon 100.0 4.9E-30 1.1E-34 240.2 13.7 192 91-293 24-227 (235)
368 PF00005 ABC_tran: ABC transpo 100.0 6.9E-30 1.5E-34 239.1 12.6 133 94-246 1-137 (137)
369 KOG0054 Multidrug resistance-a 100.0 3.4E-29 7.4E-34 300.5 20.1 191 91-307 534-731 (1381)
370 KOG0054 Multidrug resistance-a 100.0 4.1E-29 8.9E-34 299.8 19.0 201 91-307 1153-1362(1381)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 5.9E-29 1.3E-33 248.0 13.7 166 95-293 14-190 (197)
372 COG0488 Uup ATPase components 100.0 1.1E-27 2.3E-32 268.9 20.4 202 76-306 319-524 (530)
373 COG1129 MglA ABC-type sugar tr 100.0 2.9E-27 6.2E-32 259.5 20.6 201 93-302 274-485 (500)
374 COG4138 BtuD ABC-type cobalami 100.0 6.1E-29 1.3E-33 233.8 5.5 196 93-306 14-220 (248)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.7E-27 3.8E-32 244.8 14.2 190 87-292 11-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.9E-28 4E-33 247.1 3.2 181 87-293 13-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.6E-26 3.5E-31 239.2 10.5 183 104-292 25-242 (251)
378 PRK00635 excinuclease ABC subu 99.9 5.4E-25 1.2E-29 270.9 23.8 138 162-307 759-906 (1809)
379 cd03240 ABC_Rad50 The catalyti 99.9 1.1E-25 2.4E-30 225.7 13.0 164 97-293 16-197 (204)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.6E-25 5.6E-30 224.6 15.3 179 95-295 18-210 (213)
381 COG3845 ABC-type uncharacteriz 99.9 2.9E-24 6.3E-29 231.5 21.3 206 91-304 271-489 (501)
382 COG4178 ABC-type uncharacteriz 99.9 1.1E-24 2.5E-29 243.4 17.7 181 91-292 406-587 (604)
383 PRK00349 uvrA excinuclease ABC 99.9 6.7E-24 1.5E-28 251.7 24.5 125 166-306 792-926 (943)
384 COG4615 PvdE ABC-type sideroph 99.9 7.7E-25 1.7E-29 228.5 7.9 188 93-300 338-530 (546)
385 TIGR00630 uvra excinuclease AB 99.9 5.8E-23 1.3E-27 243.4 22.8 125 165-305 789-923 (924)
386 KOG0927 Predicted transporter 99.9 1.2E-23 2.5E-28 227.7 12.8 212 79-305 76-307 (614)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.9 4.5E-23 9.7E-28 205.8 14.4 169 94-295 12-192 (198)
388 COG4170 SapD ABC-type antimicr 99.9 3.6E-23 7.8E-28 200.0 10.3 211 90-307 19-248 (330)
389 COG1245 Predicted ATPase, RNas 99.9 1.9E-22 4.1E-27 214.2 16.4 188 78-292 342-530 (591)
390 KOG0927 Predicted transporter 99.9 2.7E-23 5.8E-28 224.9 9.6 199 78-302 389-591 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 7E-23 1.5E-27 211.5 12.3 180 102-293 21-233 (247)
392 KOG0060 Long-chain acyl-CoA tr 99.8 1.2E-20 2.6E-25 205.8 16.8 188 91-293 448-641 (659)
393 KOG0062 ATPase component of AB 99.8 1.1E-21 2.5E-26 211.3 7.8 196 82-304 84-282 (582)
394 cd03280 ABC_MutS2 MutS2 homolo 99.8 4.5E-21 9.7E-26 191.8 11.4 154 93-300 16-172 (200)
395 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.4E-20 3E-25 189.9 14.2 81 214-295 123-211 (213)
396 KOG2355 Predicted ABC-type tra 99.8 7.6E-20 1.6E-24 176.7 15.5 197 91-308 27-238 (291)
397 PF01061 ABC2_membrane: ABC-2 99.8 8.1E-22 1.8E-26 196.0 1.2 205 409-615 1-210 (210)
398 KOG0062 ATPase component of AB 99.8 7E-20 1.5E-24 197.6 14.0 182 92-298 378-559 (582)
399 cd03239 ABC_SMC_head The struc 99.8 2.3E-19 5E-24 176.1 15.9 74 218-293 95-172 (178)
400 KOG0066 eIF2-interacting prote 99.8 7.7E-20 1.7E-24 192.6 12.6 189 78-294 586-777 (807)
401 COG1245 Predicted ATPase, RNas 99.8 3E-20 6.5E-25 197.6 9.2 174 101-293 97-288 (591)
402 cd03283 ABC_MutS-like MutS-lik 99.8 1.7E-19 3.6E-24 180.2 10.6 148 90-291 13-163 (199)
403 COG2401 ABC-type ATPase fused 99.8 3.2E-19 6.9E-24 187.7 12.8 193 83-297 388-588 (593)
404 PRK00635 excinuclease ABC subu 99.8 2.3E-18 5E-23 212.9 22.0 128 165-307 1660-1796(1809)
405 COG0178 UvrA Excinuclease ATPa 99.8 8.6E-19 1.9E-23 197.6 16.3 128 165-307 783-919 (935)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.1E-19 4.5E-24 182.6 8.8 153 90-301 16-175 (222)
407 cd03241 ABC_RecN RecN ATPase i 99.8 2.4E-18 5.1E-23 180.7 15.3 76 217-295 170-249 (276)
408 cd03227 ABC_Class2 ABC-type Cl 99.8 4.2E-18 9.1E-23 164.7 14.3 75 217-293 77-155 (162)
409 KOG0064 Peroxisomal long-chain 99.7 3.9E-18 8.4E-23 183.9 10.4 173 91-284 495-674 (728)
410 PRK00349 uvrA excinuclease ABC 99.7 1.6E-17 3.5E-22 197.7 15.6 136 163-306 434-584 (943)
411 TIGR00630 uvra excinuclease AB 99.7 3.1E-17 6.8E-22 194.9 16.0 135 164-306 433-582 (924)
412 cd03243 ABC_MutS_homologs The 99.7 8.4E-18 1.8E-22 168.4 7.6 155 96-304 21-176 (202)
413 cd03242 ABC_RecF RecF is a rec 99.7 1.5E-16 3.2E-21 166.5 16.2 77 215-296 181-269 (270)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 1.1E-16 2.4E-21 160.4 10.2 136 90-278 15-152 (204)
415 KOG0066 eIF2-interacting prote 99.7 2E-17 4.4E-22 174.5 2.0 210 82-302 268-494 (807)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.3E-15 2.9E-20 154.1 11.5 157 90-305 17-179 (216)
417 TIGR02858 spore_III_AA stage I 99.6 7.5E-15 1.6E-19 152.8 9.8 139 105-305 112-267 (270)
418 KOG0063 RNAse L inhibitor, ABC 99.6 2.9E-14 6.3E-19 151.0 14.2 178 90-292 348-531 (592)
419 smart00534 MUTSac ATPase domai 99.5 1.2E-14 2.6E-19 143.6 5.4 80 216-298 60-141 (185)
420 PRK00064 recF recombination pr 99.5 1.7E-12 3.7E-17 141.4 19.1 78 215-296 271-359 (361)
421 PF02463 SMC_N: RecF/RecN/SMC 99.5 4.3E-14 9.4E-19 143.2 5.0 88 191-292 121-212 (220)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.4 5.5E-13 1.2E-17 134.7 12.0 131 91-278 16-155 (213)
423 TIGR01069 mutS2 MutS2 family p 99.4 3.3E-13 7.1E-18 159.2 10.5 137 90-278 302-446 (771)
424 TIGR01247 drrB daunorubicin re 99.4 1E-10 2.2E-15 119.8 24.1 216 422-672 7-234 (236)
425 cd03287 ABC_MSH3_euk MutS3 hom 99.4 6.7E-12 1.5E-16 127.4 13.4 139 90-285 17-160 (222)
426 KOG0063 RNAse L inhibitor, ABC 99.3 8.5E-13 1.8E-17 140.1 6.0 174 102-293 98-288 (592)
427 TIGR03062 pip_yhgE_Cterm YhgE/ 99.3 4E-11 8.8E-16 120.4 17.7 148 497-678 58-207 (208)
428 cd00820 PEPCK_HprK Phosphoenol 99.3 1.3E-12 2.8E-17 116.6 5.9 72 91-174 2-77 (107)
429 TIGR00634 recN DNA repair prot 99.3 7.7E-12 1.7E-16 144.0 10.0 77 216-295 439-519 (563)
430 PRK07721 fliI flagellum-specif 99.3 1.2E-10 2.5E-15 129.1 17.3 173 91-304 146-340 (438)
431 PRK00409 recombination and DNA 99.3 8.1E-12 1.8E-16 147.8 8.4 80 216-298 389-469 (782)
432 COG0178 UvrA Excinuclease ATPa 99.2 6.4E-11 1.4E-15 134.8 14.5 138 163-307 426-577 (935)
433 PTZ00132 GTP-binding nuclear p 99.2 5.7E-12 1.2E-16 127.2 5.4 44 222-265 157-205 (215)
434 PRK10869 recombination and rep 99.2 2.2E-11 4.8E-16 139.3 10.8 77 216-295 429-509 (553)
435 TIGR00618 sbcc exonuclease Sbc 99.2 2.3E-11 5E-16 149.6 11.3 82 212-294 945-1036(1042)
436 PHA02562 46 endonuclease subun 99.2 1.9E-11 4.2E-16 140.9 9.6 79 214-296 465-555 (562)
437 TIGR01291 nodJ ABC-2 type tran 99.2 5.3E-09 1.2E-13 108.6 26.9 231 411-677 7-250 (253)
438 cd01128 rho_factor Transcripti 99.2 7.7E-12 1.7E-16 128.9 4.7 177 99-296 11-211 (249)
439 PF13304 AAA_21: AAA domain; P 99.2 3.5E-11 7.7E-16 121.6 9.3 64 215-278 234-300 (303)
440 TIGR03861 phenyl_ABC_PedC alco 99.2 1.1E-08 2.4E-13 106.1 26.8 232 409-678 2-252 (253)
441 cd03286 ABC_MSH6_euk MutS6 hom 99.2 1.2E-10 2.6E-15 117.9 11.4 135 90-278 16-154 (218)
442 PRK08533 flagellar accessory p 99.2 2.7E-10 5.8E-15 116.6 13.6 150 100-292 20-184 (230)
443 TIGR00025 Mtu_efflux ABC trans 99.1 1.4E-08 3.1E-13 103.8 25.1 220 422-676 2-230 (232)
444 COG3910 Predicted ATPase [Gene 99.1 2.6E-10 5.7E-15 109.7 10.5 68 210-278 122-189 (233)
445 cd01124 KaiC KaiC is a circadi 99.1 6.9E-10 1.5E-14 109.1 12.8 80 213-292 67-163 (187)
446 PRK13695 putative NTPase; Prov 99.1 9.5E-11 2.1E-15 114.5 5.5 79 216-300 77-157 (174)
447 PRK03918 chromosome segregatio 99.1 3.3E-10 7E-15 137.6 10.2 78 214-293 785-868 (880)
448 PRK15066 inner membrane transp 99.0 1.5E-07 3.3E-12 97.8 28.0 237 407-678 6-253 (257)
449 PRK10246 exonuclease subunit S 99.0 6.5E-10 1.4E-14 136.4 11.3 80 213-293 945-1032(1047)
450 TIGR02788 VirB11 P-type DNA tr 99.0 6.5E-10 1.4E-14 118.7 9.5 143 97-306 137-280 (308)
451 PRK13830 conjugal transfer pro 99.0 9.5E-09 2.1E-13 123.0 18.8 78 233-314 650-736 (818)
452 cd01120 RecA-like_NTPases RecA 99.0 2.5E-09 5.4E-14 101.6 10.4 62 218-279 68-139 (165)
453 PRK01156 chromosome segregatio 98.9 2.6E-09 5.6E-14 129.9 11.0 77 214-292 798-883 (895)
454 PRK06793 fliI flagellum-specif 98.9 4.7E-09 1E-13 115.6 11.2 155 91-301 144-305 (432)
455 PRK06067 flagellar accessory p 98.9 2.6E-08 5.7E-13 102.0 13.5 157 98-293 19-187 (234)
456 TIGR02168 SMC_prok_B chromosom 98.8 3.4E-09 7.3E-14 132.1 7.8 77 213-292 1085-1165(1179)
457 TIGR00606 rad50 rad50. This fa 98.8 4.8E-09 1E-13 131.9 9.0 76 207-285 1191-1277(1311)
458 cd01131 PilT Pilus retraction 98.8 1.8E-08 3.8E-13 100.8 10.7 57 227-292 66-122 (198)
459 cd01125 repA Hexameric Replica 98.8 3E-08 6.6E-13 102.0 11.7 136 104-278 1-160 (239)
460 PRK02224 chromosome segregatio 98.7 2E-08 4.2E-13 122.1 9.6 77 215-293 779-868 (880)
461 TIGR02169 SMC_prok_A chromosom 98.7 1.6E-08 3.5E-13 126.2 8.8 77 214-293 1071-1151(1164)
462 PRK06995 flhF flagellar biosyn 98.7 4.5E-08 9.7E-13 109.4 11.2 151 92-275 244-400 (484)
463 smart00382 AAA ATPases associa 98.7 3.9E-07 8.4E-12 83.2 14.1 59 217-275 60-124 (148)
464 COG0842 ABC-type multidrug tra 98.6 2.1E-06 4.5E-11 88.9 19.6 165 483-678 116-283 (286)
465 PRK07196 fliI flagellum-specif 98.6 3.3E-08 7.2E-13 109.0 6.2 88 90-178 142-239 (434)
466 TIGR03238 dnd_assoc_3 dnd syst 98.6 2.3E-08 5E-13 110.1 3.6 51 91-145 19-69 (504)
467 TIGR01248 drrC daunorubicin re 98.6 2.1E-06 4.6E-11 82.2 15.9 128 481-611 15-146 (152)
468 TIGR00611 recf recF protein. A 98.5 1.1E-07 2.4E-12 103.8 7.2 60 216-278 274-342 (365)
469 TIGR01026 fliI_yscN ATPase Fli 98.5 6.4E-07 1.4E-11 99.6 12.8 176 91-304 151-345 (440)
470 PRK13891 conjugal transfer pro 98.5 2.7E-06 5.9E-11 102.6 18.8 69 228-297 680-751 (852)
471 TIGR02655 circ_KaiC circadian 98.5 4.4E-09 9.6E-14 119.0 -5.0 165 94-292 10-190 (484)
472 TIGR01420 pilT_fam pilus retra 98.5 5.9E-07 1.3E-11 97.4 11.6 56 227-291 187-242 (343)
473 COG0419 SbcC ATPase involved i 98.5 3.7E-07 7.9E-12 111.2 10.3 79 213-293 811-897 (908)
474 TIGR03881 KaiC_arch_4 KaiC dom 98.5 4.8E-08 1E-12 99.6 2.2 32 94-125 9-41 (229)
475 PRK14079 recF recombination pr 98.5 3.5E-07 7.5E-12 99.4 8.0 75 216-298 262-345 (349)
476 PRK05399 DNA mismatch repair p 98.4 5E-07 1.1E-11 108.6 9.2 137 92-287 596-738 (854)
477 cd02023 UMPK Uridine monophosp 98.4 2.4E-07 5.3E-12 92.3 5.1 112 106-250 1-113 (198)
478 cd01130 VirB11-like_ATPase Typ 98.4 6.3E-07 1.4E-11 88.7 7.6 83 93-178 14-99 (186)
479 PLN03210 Resistant to P. syrin 98.3 2.6E-06 5.7E-11 106.3 10.2 162 97-314 200-365 (1153)
480 TIGR02680 conserved hypothetic 98.3 1.2E-06 2.7E-11 110.0 7.3 60 214-276 1244-1315(1353)
481 PRK13898 type IV secretion sys 98.2 2.5E-05 5.4E-10 94.1 17.4 49 231-279 638-687 (800)
482 PRK09825 idnK D-gluconate kina 98.2 1.3E-06 2.8E-11 85.8 3.4 65 103-174 2-69 (176)
483 PRK13873 conjugal transfer ATP 98.1 7.8E-05 1.7E-09 89.9 19.2 46 233-278 633-679 (811)
484 PRK06002 fliI flagellum-specif 98.1 3.7E-06 8E-11 93.1 7.1 75 83-161 144-230 (450)
485 cd01122 GP4d_helicase GP4d_hel 98.1 7.4E-05 1.6E-09 78.1 16.2 38 91-128 17-54 (271)
486 PF13555 AAA_29: P-loop contai 98.1 3.5E-06 7.5E-11 67.7 4.2 37 94-130 12-49 (62)
487 PF13558 SbcCD_C: Putative exo 98.1 7.1E-06 1.5E-10 71.5 6.4 49 214-262 29-90 (90)
488 TIGR03518 ABC_perm_GldF glidin 98.1 0.0023 5E-08 66.0 25.9 153 485-676 71-239 (240)
489 cd00009 AAA The AAA+ (ATPases 98.1 1.8E-05 4E-10 72.8 9.2 55 223-278 72-131 (151)
490 COG1682 TagG ABC-type polysacc 98.1 0.0014 3E-08 68.4 24.0 201 407-617 16-226 (263)
491 PRK09270 nucleoside triphospha 98.0 9.7E-06 2.1E-10 82.9 6.4 76 102-178 31-107 (229)
492 PRK06315 type III secretion sy 98.0 2.1E-05 4.6E-10 87.3 9.4 109 91-203 152-277 (442)
493 PRK08149 ATP synthase SpaL; Va 98.0 1.4E-05 3.1E-10 88.2 7.9 71 90-161 138-216 (428)
494 PRK00454 engB GTP-binding prot 98.0 0.00011 2.4E-09 72.4 13.4 66 193-266 127-195 (196)
495 TIGR00416 sms DNA repair prote 97.9 2.6E-05 5.6E-10 87.6 8.8 62 234-295 169-247 (454)
496 PF00488 MutS_V: MutS domain V 97.9 0.00027 5.9E-09 72.6 15.6 46 233-278 120-167 (235)
497 TIGR00235 udk uridine kinase. 97.9 4.7E-06 1E-10 83.8 2.2 28 102-129 4-31 (207)
498 TIGR00554 panK_bact pantothena 97.9 1.3E-05 2.8E-10 84.6 5.1 73 105-179 63-138 (290)
499 PF09818 ABC_ATPase: Predicted 97.9 0.00027 5.8E-09 77.4 15.1 79 217-296 322-416 (448)
500 TIGR02524 dot_icm_DotB Dot/Icm 97.9 8.2E-05 1.8E-09 81.1 11.2 28 102-129 132-159 (358)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=8.9e-112 Score=978.42 Aligned_cols=655 Identities=75% Similarity=1.179 Sum_probs=534.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCccccCCCCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccC
Q 005754 1 MPGFDSVETPNGDLTDCPYQSNDCSPARDLLHQLPSLMSSCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTD 80 (679)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (679)
||-||.||..| |-|-.|.+-.|-+ -+...++.....+++++|.|++|+++........+....+. .....
T Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~~~ 70 (659)
T PLN03211 1 MPVFDGVENQN----DGPDRSKPPSQDS--RDLPSLLLSSCYPITLKFMDVCYRVKFENMKNKGSNIKRIL----GHKPK 70 (659)
T ss_pred CCCcccccCCC----CCCCCCCcccCCc--hhhhhhhcCCCCceEEEEEeEEEEEccCCCccccccccccc----ccccc
Confidence 89999999877 3455555444333 45556666777899999999999997553111111111111 11123
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCC
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~ 160 (679)
.++++++++++++|+|+|+++++||++||+||||||||||||+|+|+.+++ ..+|+|.+||++.....++++|||+|++
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDD 149 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchhhccceEEECccc
Confidence 455677888899999999999999999999999999999999999998763 3689999999876555567799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||+||+.|.+.++.+...++++++++++++++.+||++++|+.+|++.+++|||||||||+||++|+.+|+||+
T Consensus 150 ~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999999999999887776655566677788999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCC
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPM 320 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~ 320 (679)
|||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|++++.|+++++.+||+++|++||++.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~ 309 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPM 309 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCC
Confidence 99999999999999999999999988999999999998778999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCcccCCCccccccchHHHHHHHHhhhhhHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCC
Q 005754 321 NPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNN 400 (679)
Q Consensus 321 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (679)
|||||++|+++.....+...+.+.+...+.+.+.|++...++.................. .. ...+.. + ...
T Consensus 310 NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~-~--~~~ 381 (659)
T PLN03211 310 NPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFV----GS-ASTKEH-R--SSD 381 (659)
T ss_pred CHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhh----hc-cccccc-c--cCC
Confidence 999999999875321111111122223345556665433332222211110000000000 00 000000 0 011
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 401 VIGFATWLNQFSILLHRSLKERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFAF 480 (679)
Q Consensus 401 ~~~~~~~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~r~g~lf~~~~~~~~~~~~~~i~~f 480 (679)
..+.++||+|+.+|++|+++++|++.+...|+++++++|+++|++||+++..++++|.|++||+++++++.+++++++.|
T Consensus 382 ~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f 461 (659)
T PLN03211 382 RISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVF 461 (659)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12457899999999999999989888888999999999999999999998889999999999999998888888999999
Q ss_pred HHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 481 PQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGA 560 (679)
Q Consensus 481 ~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa 560 (679)
+.||++|+||+.+|+|++++|++||+++|+|+.++.+++|++|+|||+||++++.+|++|++++++..++++++|+++|+
T Consensus 462 ~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a 541 (659)
T PLN03211 462 PQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGA 541 (659)
T ss_pred HHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhcccCCChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCC---CCcccc
Q 005754 561 IIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRH---GSSRDA 637 (679)
Q Consensus 561 ~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~---~~~c~~ 637 (679)
++|+.++|+.+++++++++++|+||++++||+||+|++|+||++|+|||++.|||++.+.+.+.++|+.+. ...|..
T Consensus 542 ~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~ 621 (659)
T PLN03211 542 AIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF 621 (659)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999998764222235675421 233531
Q ss_pred CcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 638 SCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
.....++..+.|.|+++|++++++||+++|++|+++|
T Consensus 622 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 622 ----VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ----chhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1222233357899999999999999999999999876
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.7e-105 Score=913.10 Aligned_cols=583 Identities=41% Similarity=0.699 Sum_probs=501.3
Q ss_pred cCCCCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcH
Q 005754 38 MSSCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGK 117 (679)
Q Consensus 38 ~~~~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGK 117 (679)
.....+++++|+|++++.+.+.+ ..+++|+|||++++|||++||||||||||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~k~iL~~vsg~~~~Gel~AimG~SGsGK 69 (613)
T KOG0061|consen 18 LPYLEPVKLSFRNLTLSSKEKSK----------------------------KTKTILKGVSGTAKPGELLAIMGPSGSGK 69 (613)
T ss_pred ccccccceeEEEEEEEEecCCCC----------------------------ccceeeeCcEEEEecCeEEEEECCCCCCH
Confidence 34567788999999999864321 24789999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCeeeEEEECCCCcc-ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 005754 118 STMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV 196 (679)
Q Consensus 118 STLL~~L~G~~~~~~~~~G~i~~~g~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~ 196 (679)
|||||+|+|+...+...+|+|++||++.. +.+++.+|||.|||.++|+|||+|++.|++.+|+|...++++++++|+++
T Consensus 70 tTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~v 149 (613)
T KOG0061|consen 70 TTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEV 149 (613)
T ss_pred HHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999998865468999999996654 46788999999999999999999999999999999988999999999999
Q ss_pred HHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005754 197 MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 197 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~ 276 (679)
++++||.+++|+++|+...||+||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+||
T Consensus 150 i~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQ 229 (613)
T KOG0061|consen 150 ISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQ 229 (613)
T ss_pred HHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHHHhcCCcccCCCccccccchHHHHHHHHh
Q 005754 277 PSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYN 356 (679)
Q Consensus 277 ~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (679)
|+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||++|+++.. +...+.............++
T Consensus 230 Pss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~---~~~~~~~~~~~~~~~~~~~~ 306 (613)
T KOG0061|consen 230 PSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD---SGTRELEEAVRIAKLINKFS 306 (613)
T ss_pred CcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC---CCchhHHhHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999998843 11100000011111111111
Q ss_pred hhhhHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCCcccCCCHHHHHHHHHHHHHHH-ccCchhHHHHHHHH
Q 005754 357 TLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVFQV 435 (679)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~ 435 (679)
. .....+....... .... . .+ .......+||.|+++|++|.+++ +|++.+...|+++.
T Consensus 307 ~--~~~~~~~~~~~~~------------~~~~---~--~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~ 365 (613)
T KOG0061|consen 307 Q--TDNLKKTLEALEK------------SLST---S--KK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQS 365 (613)
T ss_pred c--cchhhhhHHHHhh------------hccc---c--cc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHH
Confidence 0 0000000000000 0000 0 00 01111689999999999999998 67788889999999
Q ss_pred HHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 005754 436 IAASLLSGIMWWHSDF--REVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVE 513 (679)
Q Consensus 436 i~~~ll~G~~f~~~~~--~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~ 513 (679)
+++++++|++||+.+. .++++|.|++||++.++.+.+++++++.|++||++|.||+.+|+|+.++||+|++++++|+.
T Consensus 366 ~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~ 445 (613)
T KOG0061|consen 366 LVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFL 445 (613)
T ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHH
Confidence 9999999999999976 67889999999999999889998899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CCh
Q 005754 514 LILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMP 591 (679)
Q Consensus 514 ~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip 591 (679)
++.+++|.+|+|||+|+++++.+|++|++++++..++++++|+++++++||...|+.++++++++|++|+||+++ +||
T Consensus 446 ~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip 525 (613)
T KOG0061|consen 446 LVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIP 525 (613)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCccccCcccccccccCC--CCchHHHHHHHHHHHHHHHH
Q 005754 592 SCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQ--ISPLVSIGAFLSMFVGYRLL 669 (679)
Q Consensus 592 ~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~~~~~~~~~~~~~--~~~~~~~~iL~~~~~~f~~l 669 (679)
.||+|++|+|+++|+|||+++|||.+ . ...|.......|. ..+...+..+++ .+.|.|+.++++++++||++
T Consensus 526 ~~~~w~~~~S~~ry~~e~l~~n~~~~-~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il 599 (613)
T KOG0061|consen 526 KYFRWISYLSYFRYAFEALLINQFSG-G----SSRCFLSGNLCCE-STGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVL 599 (613)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhc-c----ccccccCcCCccc-ccHHHHHHhcCCcccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 2 2345432113444 333445666665 57999999999999999999
Q ss_pred HHHHHhhcc
Q 005754 670 AYLALRRLK 678 (679)
Q Consensus 670 ~~~~L~~i~ 678 (679)
+|++|++..
T Consensus 600 ~y~~L~~~~ 608 (613)
T KOG0061|consen 600 GYLALRFRV 608 (613)
T ss_pred HHHHHHhhc
Confidence 999999853
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.1e-101 Score=889.67 Aligned_cols=567 Identities=32% Similarity=0.550 Sum_probs=486.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-ccccCcEEEEecCCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-~~~~~~i~yv~Q~~~l~~~l 166 (679)
.+++++|+|+|+++++||+++|+|||||||||||++|+|+.+++...+|+|.+||.+.. ...++.+|||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34678999999999999999999999999999999999998764446899999998764 35677899999999999999
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-cCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNS-FIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
||+|||.|++.++.+...++++++++++++++.+||.+++|+++|+. ..++|||||||||+||+||+.+|++++|||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 99999999998888776777788889999999999999999999975 36899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCChHHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADF 325 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~n~ad~ 325 (679)
+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++||++.||+||
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~ 274 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHH
Confidence 99999999999999999998899999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccCCCccccccchHHHHHHHHhhhh-hHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCCcccC
Q 005754 326 LLDLANGVYHLDGVSEREKPNVKSSIVASYNTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGF 404 (679)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (679)
++|+++.... .+.+..+..+++.+.|+++. +.+........... ........ .. .....+.
T Consensus 275 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---------~~~~~~~~-~~----~~~~~~~ 336 (617)
T TIGR00955 275 YVQVLAVIPG----SENESRERIEKICDSFAVSDIGRDMLVNTNLWSGK---------AGGLVKDS-EN----MEGIGYN 336 (617)
T ss_pred HHHHhhcCcc----cccchHHHHHHHHHHHhcchhhHHHHHHhhhhhcc---------cccccccc-cc----ccccccC
Confidence 9999874211 11111223344555554432 11111111100000 00000000 00 0112457
Q ss_pred CCHHHHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 405 ATWLNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHSDF--REVQDRLGLFFFISVFWGVLPSVNAVFAFP 481 (679)
Q Consensus 405 ~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~~~--~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~ 481 (679)
.+|+.|+.+|++|++++ +|++.+...|+++.+++|+++|++||+++. +++++|.|++|++++++++.+++.+++.|+
T Consensus 337 ~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~ 416 (617)
T TIGR00955 337 ASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFT 416 (617)
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999986 688888899999999999999999999876 689999999999999888888888899999
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005754 482 QERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAI 561 (679)
Q Consensus 482 ~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~ 561 (679)
.||++|+||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++..||+|++++++..++++++|++++++
T Consensus 417 ~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~ 496 (617)
T TIGR00955 417 AELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCA 496 (617)
T ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCC-CCCCccccC
Q 005754 562 IMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD-RHGSSRDAS 638 (679)
Q Consensus 562 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~-~~~~~c~~~ 638 (679)
+|+..+|+.+++++++++++|+||+++ +||+||+|++|+||++|++||++.|||.+.+ ..+|++ +.+..|...
T Consensus 497 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~----~~~c~~~~~~~~c~~~ 572 (617)
T TIGR00955 497 FSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD----NIECTSANTTGPCPSS 572 (617)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCc----cccccCcCcCCCCCcC
Confidence 999999999999999999999999998 9999999999999999999999999999864 235753 223458644
Q ss_pred cccccccccCC--CCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005754 639 CKFVEEDIVGQ--ISPLVSIGAFLSMFVGYRLLAYLALRRL 677 (679)
Q Consensus 639 ~~~~~~~~~~~--~~~~~~~~iL~~~~~~f~~l~~~~L~~i 677 (679)
+ ...++.+|+ ++.|.++++|+++.++|++++|++||+.
T Consensus 573 g-~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 573 G-EVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred h-HHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 345666676 4789999999999999999999999973
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.9e-98 Score=918.83 Aligned_cols=582 Identities=26% Similarity=0.435 Sum_probs=492.1
Q ss_pred CCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHH
Q 005754 41 CYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120 (679)
Q Consensus 41 ~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTL 120 (679)
..|++++|+||+|+|+.+...+ +.+..++++++|+|||++++|||+++|+||||||||||
T Consensus 863 ~~~~~~~~~~v~y~v~~~~~~~--------------------~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTL 922 (1470)
T PLN03140 863 FTPLAMSFDDVNYFVDMPAEMK--------------------EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTL 922 (1470)
T ss_pred CCcceEEEEEEEEEEccCcccc--------------------ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHH
Confidence 4567899999999997543210 11223345689999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 005754 121 LNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE 199 (679)
Q Consensus 121 L~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 199 (679)
||+|+|+.++ +..+|+|.+||.+... ..++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.
T Consensus 923 L~~LaG~~~~-g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~ 1001 (1470)
T PLN03140 923 MDVLAGRKTG-GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMEL 1001 (1470)
T ss_pred HHHHcCCCCC-CcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999754 2368999999987543 4567899999999999999999999999888776656667777889999999
Q ss_pred cCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 200 lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.
T Consensus 1002 lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140 1002 VELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081 (1470)
T ss_pred CCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 99999999999987778999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHhCCeEEEEeC-CeEEEecCh----hhHHHHHHHc-CC-CCCCCCChHHHHHHHhcCCcccCCCccccccchHHHHH
Q 005754 280 RVYQMFDKVLVLSE-GRCLYFGKG----SEAMSYFESV-GF-SPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIV 352 (679)
Q Consensus 280 ~i~~~~D~v~lL~~-G~iv~~G~~----~~~~~~f~~~-g~-~~~~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (679)
++++.||++++|++ |+++|+|++ +++.+||+++ |+ .||+..|||||++|+++... + .....+++
T Consensus 1082 ~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~--~-------~~~~~d~~ 1152 (1470)
T PLN03140 1082 DIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAA--E-------VKLGIDFA 1152 (1470)
T ss_pred HHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccc--c-------ccccchHH
Confidence 78999999999996 899999996 6899999997 66 49999999999999986321 0 01123466
Q ss_pred HHHhhhh-hHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCCcccCCCHHHHHHHHHHHHHHH-ccCchhHHH
Q 005754 353 ASYNTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKE-RKHESLNTL 430 (679)
Q Consensus 353 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~ 430 (679)
+.|+++. +++..+...+... ........ .....+.++||+|+++|++|++++ ||+|.++..
T Consensus 1153 ~~~~~s~~~~~~~~~~~~~~~-------------~~~~~~~~----~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~ 1215 (1470)
T PLN03140 1153 EHYKSSSLYQRNKALVKELST-------------PPPGASDL----YFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLV 1215 (1470)
T ss_pred HHHhccHHHHHHHHHHHHhcc-------------CCCCcccc----ccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHH
Confidence 7776542 2222222221110 00000000 012246789999999999999986 799999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHH
Q 005754 431 RVFQVIAASLLSGIMWWHSDF-----REVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSR 505 (679)
Q Consensus 431 r~~~~i~~~ll~G~~f~~~~~-----~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~ 505 (679)
|+++++++|+++|++||+++. .++++|.|++|+.+++.++..+.+.++.|..||++|+|||++|+|++++|++|+
T Consensus 1216 r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~ 1295 (1470)
T PLN03140 1216 RFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQ 1295 (1470)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Confidence 999999999999999999875 367889999999999888777777789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhc
Q 005754 506 IIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGY 585 (679)
Q Consensus 506 ~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf 585 (679)
+++|+|+.++.+++|.+|+|||+||++++..||+|++++++..++++++|+++++++|+.++|+.+++++++++++|+||
T Consensus 1296 ~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf 1375 (1470)
T PLN03140 1296 VVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGF 1375 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCC---CCccccCcccccccccCC--CCchHHHHH
Q 005754 586 YVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRH---GSSRDASCKFVEEDIVGQ--ISPLVSIGA 658 (679)
Q Consensus 586 ~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~---~~~c~~~~~~~~~~~~~~--~~~~~~~~i 658 (679)
++| +||+||+|++|+||++|+++|++.|||.+.+ .+|+++. +..| +....+.+|+ ++.|.++++
T Consensus 1376 ~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~-----~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~i 1446 (1470)
T PLN03140 1376 FIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVE-----DTIKVPGGAPDPTI----KWYIQDHYGYDPDFMGPVAAV 1446 (1470)
T ss_pred ccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCC-----CcccCCCCCCCCcH----HHHHHHhcCcCcccccchhhh
Confidence 998 9999999999999999999999999999863 3343322 1122 1223455665 468999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 005754 659 FLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 659 L~~~~~~f~~l~~~~L~~i~ 678 (679)
+++++++|++++++++|+++
T Consensus 1447 l~~~~~~f~~~~~~~~~~~~ 1466 (1470)
T PLN03140 1447 LVGFTVFFAFIFAFCIRTLN 1466 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.8e-98 Score=920.40 Aligned_cols=579 Identities=26% Similarity=0.379 Sum_probs=480.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCCCccc---cccCcEEEEecCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-HGLTGTILTNNNKPTK---HISKRTGFVTQDDILY 163 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~ 163 (679)
..+++||+|||+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||.+..+ ..++.++||+|+|.++
T Consensus 71 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred CCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 34578999999999999999999999999999999999987421 2368999999987532 3456799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCC----CCCHHHHHHH-HHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 164 PHLTVRETLVFCSLLRLPR----TLSTKEKTSI-AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.+||+||+.|++.++.|. ..++++..++ ++++++.+||++++|+++|++.+++|||||||||+||++|+.+|+|
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 9999999999988876543 2344444434 5778999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCC
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPS 317 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~ 317 (679)
++|||||+|||+.++.++++.|++++++ |+|||+++|||+++++++||++++|++|+++|+|+++++.+||+++|++||
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p 310 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999874 999999999998889999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhcCCcccCC-CccccccchHHHHHHHHhhhh-hHHHHHHHHhhccch----hhhhhhcCCCCCCCCcc
Q 005754 318 FPMNPADFLLDLANGVYHLDG-VSEREKPNVKSSIVASYNTLL-APKVRAACMEATTLP----RREALLTGSSSSSHSSE 391 (679)
Q Consensus 318 ~~~n~ad~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 391 (679)
+++|||||++++++....... ..+...+...+++.++|+++. +++..++++...... ..+.... ..... .
T Consensus 311 ~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~ 386 (1394)
T TIGR00956 311 DRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRE--SHVAK--Q 386 (1394)
T ss_pred CCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHH--HHHhh--h
Confidence 999999999999874311000 011223445677888887653 233333332211100 0000000 00000 0
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHH
Q 005754 392 EHTRSHNNNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHSDF--REVQDRLGLFFFISVFW 468 (679)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~~~--~~~~~r~g~lf~~~~~~ 468 (679)
. +.......+..|||+|+++|++|++++ +||+.....|+++++++|+++|++||+++. +++++|.|++||++++.
T Consensus 387 ~--~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~ 464 (1394)
T TIGR00956 387 S--KRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFN 464 (1394)
T ss_pred c--ccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 0 000112246789999999999999986 688888899999999999999999999876 68999999999999998
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHH
Q 005754 469 GVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYV 548 (679)
Q Consensus 469 ~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~ 548 (679)
++.++ ..+..++.||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++++..
T Consensus 465 ~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~ 543 (1394)
T TIGR00956 465 AFSSL-LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICT 543 (1394)
T ss_pred HHHHH-HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHH
Confidence 87764 56777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccc
Q 005754 549 LVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLG 626 (679)
Q Consensus 549 ~~~~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~ 626 (679)
+++.++++++|+++||.++|+.+++++++++++|+||+++ +||+||+|++|+||++|||||++.|||.+.+ ++
T Consensus 544 ~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~-----~~ 618 (1394)
T TIGR00956 544 LAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRR-----FE 618 (1394)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCc-----cc
Confidence 9999999999999999999999999999999999999998 9999999999999999999999999999873 56
Q ss_pred cCC--C----------CCCccccCccc---------cccc-ccCC--CCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 627 CFD--R----------HGSSRDASCKF---------VEED-IVGQ--ISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 627 C~~--~----------~~~~c~~~~~~---------~~~~-~~~~--~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
|+. | .+..|...+.. ..+. .+++ ++.|+|+++|++++++|++++++++++++
T Consensus 619 C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 619 CSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred ccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 641 1 24457532211 1122 3343 57999999999999999999999999876
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=9.7e-97 Score=908.67 Aligned_cols=612 Identities=22% Similarity=0.356 Sum_probs=490.3
Q ss_pred CCCCCeEEEEEeEEEEEEeccCCCCCccch----hhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCC
Q 005754 39 SSCYPITLKFIDVCYRIKIENKSKEGSSFR----RIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSG 114 (679)
Q Consensus 39 ~~~~~~~l~~~~l~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnG 114 (679)
.....++++|+||++...+.........+. .....-. . ....+.+++ .+++||+|||+.++|||+++|+||||
T Consensus 125 ~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~-~-~~~~~~~k~-~~~~IL~~vs~~i~~Ge~~~llGpnG 201 (1470)
T PLN03140 125 IKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESAL-G-MLGINLAKK-TKLTILKDASGIIKPSRMTLLLGPPS 201 (1470)
T ss_pred CCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHH-H-HhccccCCC-ccceeccCCeEEEeCCeEEEEEcCCC
Confidence 345667899999999887533221111111 1000000 0 000112233 35789999999999999999999999
Q ss_pred CcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC-------CCCH
Q 005754 115 SGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPR-------TLST 186 (679)
Q Consensus 115 sGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~ 186 (679)
||||||||+|+|+++++...+|+|.+||.+..+ ..++.++||+|+|.+++.+||+|||.|++.++.+. ..++
T Consensus 202 SGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~ 281 (1470)
T PLN03140 202 SGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELAR 281 (1470)
T ss_pred CCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCH
Confidence 999999999999988754579999999987643 23678999999999999999999999988765321 1111
Q ss_pred HHH------------------------HHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 187 KEK------------------------TSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 187 ~~~------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+++ ...++++++.+||++++||.+|++.+++|||||||||+||++|+.+|+++|||
T Consensus 282 ~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllD 361 (1470)
T PLN03140 282 REKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMD 361 (1470)
T ss_pred HHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEe
Confidence 111 12357899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCC
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMN 321 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~n 321 (679)
|||+|||+.++.++++.|+++++ .|+|||+++|||.++++++||+|++|++|+++|+|+++++.+||+++|++||+++|
T Consensus 362 EPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n 441 (1470)
T PLN03140 362 EISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKG 441 (1470)
T ss_pred CCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999987 58999999999988899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCcccCCCcccccc---chHHHHHHHHhhhh-hHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccC
Q 005754 322 PADFLLDLANGVYHLDGVSEREKP---NVKSSIVASYNTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSH 397 (679)
Q Consensus 322 ~ad~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (679)
||||++|+++.............+ ...++++++|+++. ..+..+++....+ . ...+.. . .
T Consensus 442 ~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---~--------~~~~~~--~-~-- 505 (1470)
T PLN03140 442 TADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFD---K--------SQSHKA--A-L-- 505 (1470)
T ss_pred hHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhh---h--------hhcccc--c-c--
Confidence 999999998742110000000111 34567888887653 2223222221000 0 000000 0 0
Q ss_pred CCCcccCCCHHHHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHHHHHH
Q 005754 398 NNNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHSDF-----REVQDRLGLFFFISVFWGVL 471 (679)
Q Consensus 398 ~~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~~~-----~~~~~r~g~lf~~~~~~~~~ 471 (679)
....+..+++.|++.|++|+++. +||+..+..|+++.+++|+++|++||+++. .+.+.+.|++||.++++++.
T Consensus 506 -~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~ 584 (1470)
T PLN03140 506 -VFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFN 584 (1470)
T ss_pred -cCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 12247789999999999999986 677778899999999999999999999853 34677889999988887655
Q ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHH
Q 005754 472 PSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVS 551 (679)
Q Consensus 472 ~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~ 551 (679)
+ +..++.++.||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++++..+++
T Consensus 585 ~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~ 663 (1470)
T PLN03140 585 G-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMA 663 (1470)
T ss_pred H-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 4 577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCC
Q 005754 552 QGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD 629 (679)
Q Consensus 552 ~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~ 629 (679)
++++++++++++++.+|+.+++++++++++|+||+++ +||+||+|++|+||++|||+|++.|||.+.+ |.. ..|.+
T Consensus 664 ~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~-~~~-~~~~~ 741 (1470)
T PLN03140 664 AGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPR-WMN-KMASD 741 (1470)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCcc-ccC-cccCC
Confidence 9999999999999999999999999999999999998 9999999999999999999999999998753 322 11221
Q ss_pred CCCCccccCcccccccccCCC----CchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 630 RHGSSRDASCKFVEEDIVGQI----SPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 630 ~~~~~c~~~~~~~~~~~~~~~----~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
. +...| ...++.+|+. .+|+++++|++++++|+++++++|++++
T Consensus 742 ---~-~~~~G-~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 742 ---N-STRLG-TAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ---C-CcccH-HHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 12122 2345666653 3589999999999999999999999876
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.6e-94 Score=889.92 Aligned_cols=575 Identities=25% Similarity=0.411 Sum_probs=477.8
Q ss_pred CeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 005754 43 PITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLN 122 (679)
Q Consensus 43 ~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~ 122 (679)
...++|+||+|+++.+. +++.+|+|||+++++||++||+||||||||||||
T Consensus 757 ~~~l~~~nl~~~~~~~~-----------------------------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~ 807 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIKK-----------------------------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLN 807 (1394)
T ss_pred CceEEEEeeEEEecCCC-----------------------------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 34688999998874211 2367999999999999999999999999999999
Q ss_pred HHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 005754 123 VLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202 (679)
Q Consensus 123 ~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 202 (679)
+|+|+.+++...+|+|.+||++....+++.+|||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||
T Consensus 808 ~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L 887 (1394)
T TIGR00956 808 VLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM 887 (1394)
T ss_pred HHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 99999875334579999999887556778899999999999999999999999888876666677778889999999999
Q ss_pred CccccccccCccCcccCHHHHHHHHHHHHHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHH
Q 005754 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRV 281 (679)
Q Consensus 203 ~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~-lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i 281 (679)
.+++|+.+|+. ..+|||||||||+||+||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+
T Consensus 888 ~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~ 966 (1394)
T TIGR00956 888 ESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAIL 966 (1394)
T ss_pred hhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHH
Confidence 99999999853 34899999999999999999997 99999999999999999999999999988999999999998777
Q ss_pred HHhCCeEEEEeCC-eEEEecCh----hhHHHHHHHcCC-CCCCCCChHHHHHHHhcCCcccCCCccccccchHHHHHHHH
Q 005754 282 YQMFDKVLVLSEG-RCLYFGKG----SEAMSYFESVGF-SPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASY 355 (679)
Q Consensus 282 ~~~~D~v~lL~~G-~iv~~G~~----~~~~~~f~~~g~-~~~~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (679)
++.||++++|++| +++|+|++ +++.+||++.|+ +||++.|||||++|+++..... ...+.+.+.|
T Consensus 967 ~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~---------~~~~~~~~~~ 1037 (1394)
T TIGR00956 967 FEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA---------HANQDYHEVW 1037 (1394)
T ss_pred HHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc---------chhccHHHHH
Confidence 8899999999997 99999997 578999999996 9999999999999998742110 0112355566
Q ss_pred hhhh-hHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCCcccCCCHHHHHHHHHHHHHHH-ccCchhHHHHHH
Q 005754 356 NTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVF 433 (679)
Q Consensus 356 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~ 433 (679)
+.+. .++..+++....... ..... .... .....+.++||+|+++|++|++++ +|++.+...|++
T Consensus 1038 ~~s~~~~~~~~~~~~~~~~~---------~~~~~-~~~~----~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~ 1103 (1394)
T TIGR00956 1038 RNSSEYQAVKNELDRLEAEL---------SKAED-DNDP----DALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFF 1103 (1394)
T ss_pred hcCHHHHHHHHHHHHhhccc---------ccCcc-cccc----ccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5432 222222222111100 00000 0000 011246789999999999999986 788889999999
Q ss_pred HHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHH
Q 005754 434 QVIAASLLSGIMWWHSDF--REVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIF-MKERASGMYTLSSYFMSRIIGDL 510 (679)
Q Consensus 434 ~~i~~~ll~G~~f~~~~~--~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~~er~v~-~rE~~~g~Y~~~ay~la~~l~~l 510 (679)
+++++|+++|++||+++. .++++|+|++|+.+++..+. +.+.++.|+.||.+| +||+.+|+|++++|++|++++|+
T Consensus 1104 ~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~el 1182 (1394)
T TIGR00956 1104 LTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEI 1182 (1394)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999876 68999999999988876544 456778898988886 99999999999999999999999
Q ss_pred HHHHHHHHhhhhchhccccccchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 005754 511 PVELILPTVFLIIIYWMTGFKPEFIA-------FVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTG 583 (679)
Q Consensus 511 p~~~~~~~if~~i~Y~~~gl~~~~~~-------f~~f~~~~~l~~~~~~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~ 583 (679)
|+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+++++++|+.++|+.+++++++++++|+
T Consensus 1183 P~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~ 1262 (1394)
T TIGR00956 1183 PYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFC 1262 (1394)
T ss_pred HHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988765 99999999999999999999999999999999999999999999999
Q ss_pred hcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCC--------CCCCccc-----------------
Q 005754 584 GYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD--------RHGSSRD----------------- 636 (679)
Q Consensus 584 Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~--------~~~~~c~----------------- 636 (679)
||+++ +||.||+|++|+||++|+++|++.|||.+.+ +.|.+ |.++.|.
T Consensus 1263 G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~-----~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~ 1337 (1394)
T TIGR00956 1263 GVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVP-----VTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNP 1337 (1394)
T ss_pred cccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCe-----eecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCC
Confidence 99998 9999999999999999999999999999873 45543 3445553
Q ss_pred ----------cCcccccccccC--CCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005754 637 ----------ASCKFVEEDIVG--QISPLVSIGAFLSMFVGYRLLAYLALRRL 677 (679)
Q Consensus 637 ----------~~~~~~~~~~~~--~~~~~~~~~iL~~~~~~f~~l~~~~L~~i 677 (679)
...+...+..++ .++.|+|+++++++++++ ++++++|++.
T Consensus 1338 ~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1338 NATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred CCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheE
Confidence 111111233333 467999999999999988 7778888664
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-93 Score=828.79 Aligned_cols=596 Identities=28% Similarity=0.465 Sum_probs=490.7
Q ss_pred CCCCCcccccccCccc-cCC----CCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeec
Q 005754 22 NDCSPARDLLHQLPSL-MSS----CYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNG 96 (679)
Q Consensus 22 ~~~~~~~~~~~~~~~~-~~~----~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 96 (679)
++-++-.+.+..++.. .+. ..|..++++||.|-++....-+ .+.+++++|+|
T Consensus 753 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~-----------------------~qG~~~qLL~~ 809 (1391)
T KOG0065|consen 753 AGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMP-----------------------IQGGTRQLLNN 809 (1391)
T ss_pred ccccccccccccccccccccccCCCccccccccceEEEEeCCcccc-----------------------ccccceEhhhc
Confidence 3444455666555552 221 2255667777766665432211 11256889999
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-ccccCcEEEEecCCCCCCCCCHHHHHHHH
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISKRTGFVTQDDILYPHLTVRETLVFC 175 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 175 (679)
||+.++||.++||||+||||||||||+||||... +.++|+|.+||.+.. +.++|.+|||.|+|.|.+.+||+|.|.|+
T Consensus 810 V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fS 888 (1391)
T KOG0065|consen 810 VSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFS 888 (1391)
T ss_pred CceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHH
Confidence 9999999999999999999999999999999864 348999999999987 67899999999999999999999999999
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC-CeEEEeCCCCCCCHHHHH
Q 005754 176 SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP-SLLILDEPTSGLDSTAAY 254 (679)
Q Consensus 176 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P-~lllLDEPtsgLD~~~~~ 254 (679)
|.+|+|...+.+++.+.||++++.++|++++|..||... +|||.+||||++||.+|+.+| .||+|||||||||+.++.
T Consensus 889 A~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~ 967 (1391)
T KOG0065|consen 889 AALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAA 967 (1391)
T ss_pred HHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHH
Confidence 999999999999999999999999999999999999877 999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC-CeEEEecChh----hHHHHHHHcC-CCCCCCCChHHHHHH
Q 005754 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE-GRCLYFGKGS----EAMSYFESVG-FSPSFPMNPADFLLD 328 (679)
Q Consensus 255 ~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~-G~iv~~G~~~----~~~~~f~~~g-~~~~~~~n~ad~~~~ 328 (679)
.|++.+|++++.|+||+||+|||+.++++.||++++|++ |++||+|+.. .+++||+++| ..||...|||||++|
T Consensus 968 ~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLe 1047 (1391)
T KOG0065|consen 968 IVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLE 1047 (1391)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHh
Confidence 999999999999999999999999999999999999986 9999999874 4677999987 789998999999999
Q ss_pred HhcCCcccCCCccccccchHHHHHHHHhhh-hhHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCCcccCCCH
Q 005754 329 LANGVYHLDGVSEREKPNVKSSIVASYNTL-LAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATW 407 (679)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (679)
++...... ....++++.|+++ .+++.++++......+ +...+ +. .....+.+|+
T Consensus 1048 vi~~~~~~---------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~-----------~~~~~-~~----~~~~~fa~s~ 1102 (1391)
T KOG0065|consen 1048 VIGAGAEA---------SLSVDFAEIWKNSEEYKRNKELVKELSQPP-----------PGFST-DL----EFKTRFAQSL 1102 (1391)
T ss_pred hccccccc---------ccCccHHHHHhccHHHHHHHHHHHHHhcCC-----------ccCCc-cc----ccccccchhH
Confidence 98742111 1223567778764 3444444444332211 00000 00 1123578999
Q ss_pred HHHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005754 408 LNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHSDF--REVQDRLGLFFFISVFWGVLPSVNAVFAFPQER 484 (679)
Q Consensus 408 ~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~~~--~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~~er 484 (679)
|.|++.+++|++.. ||+|.++.+|++.+++.|+++|+.||+.+. .++||.+|++|+.+++.+......+.+.+..||
T Consensus 1103 ~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~ 1182 (1391)
T KOG0065|consen 1103 WYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATER 1182 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhh
Confidence 99999999999875 899999999999999999999999999886 799999999999888764332222345667899
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005754 485 AIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMD 564 (679)
Q Consensus 485 ~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~ 564 (679)
.+++||+++|+|++.+|.+|++++|+|+.++++++|.+++|+++|+..++.+|++|++.+++..++.+.+|+++.+++||
T Consensus 1183 ~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn 1262 (1391)
T KOG0065|consen 1183 LYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPN 1262 (1391)
T ss_pred hheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCC--------CCCCc
Q 005754 565 AKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD--------RHGSS 634 (679)
Q Consensus 565 ~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~--------~~~~~ 634 (679)
.+.|+.+.++++.++.+|+|+++| .||.||+||+|+||+.|..++++..++++.+ ..|.. |.+..
T Consensus 1263 ~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~-----v~c~~~e~~~~~pp~g~t 1337 (1391)
T KOG0065|consen 1263 LQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVE-----VTCEDSEMNYFDPPSGQT 1337 (1391)
T ss_pred hhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCc-----eeeecCCccccCCCCCcC
Confidence 999999999999999999999998 9999999999999999999999999999874 56753 23445
Q ss_pred cccCcccccccccC----C--CCchHHHHHHHHHHHHHHHHHHHHHhh
Q 005754 635 RDASCKFVEEDIVG----Q--ISPLVSIGAFLSMFVGYRLLAYLALRR 676 (679)
Q Consensus 635 c~~~~~~~~~~~~~----~--~~~~~~~~iL~~~~~~f~~l~~~~L~~ 676 (679)
|.. .....+| + +......++.+.+.+++.+++.+..|+
T Consensus 1338 cge----~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y 1381 (1391)
T KOG0065|consen 1338 CGE----FMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKY 1381 (1391)
T ss_pred HHH----HHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHH
Confidence 531 1122222 2 122223334555666777777666665
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.8e-87 Score=775.64 Aligned_cols=566 Identities=27% Similarity=0.441 Sum_probs=480.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccc-cCcEEEEecCCCCCCCCCH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI-SKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~-~~~i~yv~Q~~~l~~~lTV 168 (679)
..+||+|+|+.++|||++.++||+||||||||++|+|..+......|+|.+||.+..+.. ++.++|++|+|.++|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 357999999999999999999999999999999999987654445679999998875533 5789999999999999999
Q ss_pred HHHHHHHhhhcCCCC----CCHHHHH-HHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 169 RETLVFCSLLRLPRT----LSTKEKT-SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+|+|.|+++++.+.. .++.++. +..+.+++.+||++|+||++||...||+||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987732 2333332 26789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCh
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNP 322 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~n~ 322 (679)
+|+|||+.++.++++.|+++++. +.|.+++.|||+++++++||+|++|++|+++|+||.+++++||+++|+.||+++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999975 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCCCccc---cccchHHHHHHHHhhhh-hHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCC
Q 005754 323 ADFLLDLANGVYHLDGVSER---EKPNVKSSIVASYNTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHN 398 (679)
Q Consensus 323 ad~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (679)
|||+.++++.........+. .......++.+.|.+.. +.+...++....+. ...+ ....
T Consensus 367 ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~-----------~k~~------~~al 429 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDK-----------SKKH------KAAL 429 (1391)
T ss_pred HHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhh-----------hhcc------chhh
Confidence 99999999832110001111 11223367777777643 33333333211110 0000 0011
Q ss_pred CCcccCCCHHHHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCCC-c--hhHHHHHHHHHHHHHHHHHHHHH
Q 005754 399 NNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHSD-F--REVQDRLGLFFFISVFWGVLPSV 474 (679)
Q Consensus 399 ~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~~-~--~~~~~r~g~lf~~~~~~~~~~~~ 474 (679)
....+..+.|.|++.|+.|.+.. .||..++..++++.+++|+++|++|++.+ . .+.+.|.|++||.+++.++.+ +
T Consensus 430 ~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~-l 508 (1391)
T KOG0065|consen 430 VSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG-L 508 (1391)
T ss_pred cCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-H
Confidence 23467899999999999999876 56666778899999999999999999987 3 578999999999999987666 4
Q ss_pred HHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHH
Q 005754 475 NAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGL 554 (679)
Q Consensus 475 ~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~ 554 (679)
..++...+.||||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++||++++.+||.+++++++.++++.++
T Consensus 509 aEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~l 588 (1391)
T KOG0065|consen 509 AEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGL 588 (1391)
T ss_pred HHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 66777779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCC--
Q 005754 555 GLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDR-- 630 (679)
Q Consensus 555 g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~-- 630 (679)
++++++++++...|++++++.++...+++||+|| +||+||+|++|+||+.||+|+++.|||.+.+ ..|.+.
T Consensus 589 Fr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~-----~~c~p~gp 663 (1391)
T KOG0065|consen 589 FRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRR-----WPCSPSGP 663 (1391)
T ss_pred HHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhccc-----CCCCCCCC
Confidence 9999999999999999999999999999999998 9999999999999999999999999999974 566621
Q ss_pred -------CCCccccCccccccccc------------CCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 631 -------HGSSRDASCKFVEEDIV------------GQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 631 -------~~~~c~~~~~~~~~~~~------------~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
....|...+..++.+.+ ...++|+++++++|+.++|.++..+++.++|
T Consensus 664 ~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 664 AYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 24567554444433221 1346899999999999999999999998876
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-53 Score=410.85 Aligned_cols=215 Identities=28% Similarity=0.515 Sum_probs=194.5
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEE
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTG 154 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~ 154 (679)
..+++.|.|++..+|+|||++|++||+++|+||||||||||||||.|+.+++ +|+|.++|.... ..+|+++|
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcC
Confidence 3456678889999999999999999999999999999999999999999864 799999996542 24688999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
+|||+..|||++||.||+..+... -...++++.++++.++|+++||.+.+| .+|.+|||||||||+|||||+.
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~--v~~~~k~eA~~~A~~lL~~VGL~~ka~-----~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVK--VKKLSKAEAREKALELLEKVGLADKAD-----AYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred eecccccccccchHHHHHHhhhHH--HcCCCHHHHHHHHHHHHHHcCchhhhh-----hCccccCcHHHHHHHHHHHHcC
Confidence 999999999999999999986432 234678899999999999999998766 4677899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+++|+|||||+|||+...++++.+++|+++|.|.|++||+.. .+.+.+|||++|++|+++..|+|++.
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999965 58899999999999999999998875
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-49 Score=394.58 Aligned_cols=218 Identities=25% Similarity=0.482 Sum_probs=198.0
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEE
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGF 155 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~y 155 (679)
..++++|+|+++.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||++... ++|++|||
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhh
Confidence 3456778888999999999999999999999999999999999999999874 8999999988643 67999999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
|-|.-.|||++||.||+.+.-.+. ..++++.+++++++|+.+||+.. ...++++++|||||+|||.+||||+.+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 999999999999999999865543 45788899999999999999852 245688999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|++||||||+++|||.++.++.+.++++.++ |+|||++|||. +|.++++|||.+|++|+++..++|++++.
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999875 99999999995 56899999999999999999999998754
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-48 Score=411.42 Aligned_cols=220 Identities=37% Similarity=0.590 Sum_probs=197.6
Q ss_pred CCCCcccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEE
Q 005754 80 DDQGSTAKIQ-ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGF 155 (679)
Q Consensus 80 ~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~y 155 (679)
..++++|+|+ ++.+|+||||++++||++||+||||||||||||+|+|+++| .+|+|.++|.+... ..++++||
T Consensus 6 ~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 6 EVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred eecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcCEeCccCHHHHHhheEE
Confidence 4567888999 69999999999999999999999999999999999999987 48999999987643 56788999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|++.+++.+||+|||.|.+.++.+. ....+++++++++.+||.+.+++ .+++||+|||||++||+||+.+
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998887543 24566789999999999985444 4557999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG-KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES 311 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 311 (679)
|+++||||||+||||.++.++.+.|++++++| +||++|||++. ++..+||+|++|++|++++.|+++++...+..
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 99999999999999999999999999999987 89999999975 58899999999999999999999997776644
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.7e-49 Score=386.84 Aligned_cols=220 Identities=34% Similarity=0.503 Sum_probs=197.9
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------ccc
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HIS 150 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~ 150 (679)
.+..++++++++++.|++|||++|++||+++|+||||+|||||||+|.|+++|+ +|+|.++|.+..+ .++
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHH
Confidence 445667777888999999999999999999999999999999999999999974 7999999987532 467
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
+++|++||+..||..|||.||+.|..+- ....+++..++.+..-|+.+||... +.+.++.+||||||||++|||
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre--~~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLRE--HTKLPESLIRELVLMKLELVGLRGA----AADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHh--hccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchHHHHHHHHH
Confidence 8899999999999999999999996543 3356788888999999999999864 345788999999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|++.+|+++++||||+||||.++..+.+++++|.+. |.|++++|||.. +++.+|||+++|.+|+++..|+++++.+
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999876 999999999965 5999999999999999999999998754
No 14
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-49 Score=398.85 Aligned_cols=203 Identities=29% Similarity=0.437 Sum_probs=186.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-------ccccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-------KHISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-------~~~~~~i~yv~Q~~~l~ 163 (679)
..+|+|||++|++||+++|+|.||||||||+|+|.++.+|+ +|+|.++|.+.. +..|++||++||++.|+
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 56999999999999999999999999999999999999874 899999996643 24678999999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
...||.||++|...+. ..+++++++++.++|+.+||++.++ +++.+|||||||||+|||||+.+|+|||+||
T Consensus 96 ssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~-----~yP~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKAD-----RYPAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhc-----cCchhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 9999999999987764 3678999999999999999998665 5677899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+|||.+.+.|+++|+++.++ |.||+++||++ +-+.++||||.+|++|++++.|+..++
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999765 99999999996 468999999999999999999998876
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.2e-48 Score=393.64 Aligned_cols=215 Identities=31% Similarity=0.466 Sum_probs=187.5
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEec
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQ 158 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q 158 (679)
+++..|+++.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.++|++.. +++.|.++||||
T Consensus 7 ~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~g~~i~~~~~kelAk~ia~vpQ 83 (258)
T COG1120 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLDGKDIASLSPKELAKKLAYVPQ 83 (258)
T ss_pred EEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCCchhhcCHHHHhhhEEEecc
Confidence 344456678999999999999999999999999999999999999986 4799999998764 357789999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRT-LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
.....+.+||+|.+.++..-..... ...++.++.+++.|+.+|+.+.+++.+. +|||||||||.|||||+++|+
T Consensus 84 ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 84 SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETP 158 (258)
T ss_pred CCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCC
Confidence 9988889999999988754322111 1234455679999999999998876654 699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|+||||||.||...+.+++++++++++ +|+|||+++||++. ..++||++++|++|++++.|+|++++
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999999999985 59999999999874 78999999999999999999998874
No 16
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-48 Score=409.95 Aligned_cols=230 Identities=29% Similarity=0.468 Sum_probs=202.1
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEe
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVT 157 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~ 157 (679)
..++++|.|++..+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|++... -.+|.+|+||
T Consensus 7 ~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 7 EIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred EEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceee
Confidence 3456677888899999999999999999999999999999999999999874 7999999988754 4578999999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|+..|||+|||+||+.|+...+ ...++++.++++++.|+.++|++.++ +++.+|||||||||+|||||+.+|+
T Consensus 84 Q~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~-----R~p~qLSGGQqQRVALARAL~~~P~ 156 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFAD-----RKPHQLSGGQQQRVALARALVPEPK 156 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhh-----hChhhhChHHHHHHHHHHHhhcCcc
Confidence 9999999999999999998733 33456778899999999999998554 5677899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCC
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSP 316 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~ 316 (679)
+||||||.|+||..-+.++...|+++.++ |.|.|++|||. ++.+.++|||.+|++|++...|+|+++ |..
T Consensus 157 vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei--------Y~~ 227 (352)
T COG3842 157 VLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI--------YER 227 (352)
T ss_pred hhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH--------hhC
Confidence 99999999999999999999999999864 99999999995 568999999999999999999999997 334
Q ss_pred CCCCChHHHHHH
Q 005754 317 SFPMNPADFLLD 328 (679)
Q Consensus 317 ~~~~n~ad~~~~ 328 (679)
|...=.|||+-+
T Consensus 228 P~~~fVA~FiG~ 239 (352)
T COG3842 228 PATRFVADFIGE 239 (352)
T ss_pred cchHHHHHHhCc
Confidence 444445666543
No 17
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-47 Score=383.26 Aligned_cols=200 Identities=34% Similarity=0.487 Sum_probs=179.3
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI 161 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~ 161 (679)
+++++.|+...+|+|+|++|++||+++|+||||||||||||+|+|+.+| .+|+|.++|.+. ......++||||++.
T Consensus 7 ~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p---~~G~V~~~g~~v-~~p~~~~~~vFQ~~~ 82 (248)
T COG1116 7 EGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP---TSGEVLLDGRPV-TGPGPDIGYVFQEDA 82 (248)
T ss_pred EeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCccc-CCCCCCEEEEeccCc
Confidence 4455566778899999999999999999999999999999999999987 479999999887 556778999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++|.+||.||+.++...+. .++++.++++++.|+.+||.+.. ++++++|||||||||+|||||+.+|+||+|
T Consensus 83 LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~-----~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 83 LLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFE-----DKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred ccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchh-----hcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999876542 45677778999999999999855 467889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
|||+++||+.++..+.+.|.++.+ .++||+++|||.. |...++|||++|+++
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999999999999999999865 5899999999975 577899999999984
No 18
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-47 Score=403.06 Aligned_cols=215 Identities=30% Similarity=0.459 Sum_probs=194.4
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEec
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQ 158 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q 158 (679)
.++++|.|++..+|+|+|++|++||+++|+||||||||||||+|||+.+| .+|+|.++|.+.+. -.+|.+++|||
T Consensus 6 l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~---~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 6 LKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP---TSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhHCCEEEEeC
Confidence 34556677766699999999999999999999999999999999999987 48999999987654 24688999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+..|||+|||+||+.|+.+.+ ..++++.+++++++.+.|+|++..| +++++|||||||||+|||||+++|++
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~-----r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLN-----RKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHh-----cCcccCChhhHHHHHHHHHHhcCCCE
Confidence 999999999999999998765 3568889999999999999999766 45678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||+|+||...+..+...|+++.++ |.|+|.+|||.. |+..++||+.+|++|++...|+|.++.+
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 9999999999999999999999999765 899999999964 6899999999999999999999999854
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-47 Score=384.93 Aligned_cols=209 Identities=31% Similarity=0.524 Sum_probs=179.7
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc-ccCcEEEEecCC---CC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH-ISKRTGFVTQDD---IL 162 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~-~~~~i~yv~Q~~---~l 162 (679)
.|+.+++|+|||+++++|++++|+||||||||||+|+|.|+++| .+|+|.++|.+..+. -+.+||||||.. .-
T Consensus 13 ~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p---~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~ 89 (254)
T COG1121 13 SYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP---SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRS 89 (254)
T ss_pred EECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC---CcceEEEccccccccccCCeEEEcCcccccCCC
Confidence 34434699999999999999999999999999999999999986 489999999876443 246899999953 44
Q ss_pred CCCCCHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 163 YPHLTVRETLVFCSLLRLP--RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
|| +||+|.+..+...+.. ...+ ++.++.++++|+.+||.+.+|+.+| +|||||+|||.|||||+++|++|+
T Consensus 90 fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lll 162 (254)
T COG1121 90 FP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLL 162 (254)
T ss_pred CC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHHhccCCCEEE
Confidence 55 6999999886433321 1122 3447889999999999999988887 599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+|+|+.++..++++|++++++|+||++++||+. .+.++||+|+.|+ +++++.|+++++.+
T Consensus 163 LDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999999999999999976 5899999999995 78889999988754
No 20
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.1e-47 Score=378.09 Aligned_cols=194 Identities=36% Similarity=0.546 Sum_probs=169.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cc-cCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HI-SKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~-~~~i~yv~Q~~~l 162 (679)
..+|++||++|++||+++|+|||||||||||++|+|+.+| .+|.+.++|.+... .+ ++.+|||||+..|
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 5799999999999999999999999999999999999987 47899999965421 23 4579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+|++||+||+.+...+.. .+..+.+++++++++.+||.+..+ +.++.+|||||||||+|||||+.+|++||+|
T Consensus 95 l~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 95 LPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999998765542 223356778899999999986544 2456789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
|||.+||+.+++.|+++|++++++ |+|||++|||+ ++...|||++.|.+|++
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 999999999999999999999865 99999999996 47889999999999994
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-47 Score=386.23 Aligned_cols=216 Identities=31% Similarity=0.499 Sum_probs=193.8
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCC---Cccc--cccCcEEEE
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN---KPTK--HISKRTGFV 156 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~---~~~~--~~~~~i~yv 156 (679)
++.++.++...+++|||++|+.||++||+|||||||||||++|||+..|+ .|.|.+||+ +..+ ...|+||||
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred hhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEE
Confidence 44556777888999999999999999999999999999999999999874 789999998 4333 235789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|+..+|++|||.||+.|+...+ ....++.+.+.+++++|+.+.|++ ++++++.+|||||||||++||||+.+|
T Consensus 83 FQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~-----la~ryP~QLSGGQrQRVALARALA~eP 156 (345)
T COG1118 83 FQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEG-----LADRYPAQLSGGQRQRVALARALAVEP 156 (345)
T ss_pred EechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccc-----hhhcCchhcChHHHHHHHHHHHhhcCC
Confidence 99999999999999999998766 233457788899999999999998 456788899999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
++||||||+++||..-+.++.+.|+++.++ |.|++++|||+. +++++||||++|++|+|...|+++++.+
T Consensus 157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999876 999999999965 6999999999999999999999999843
No 22
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=375.36 Aligned_cols=219 Identities=28% Similarity=0.452 Sum_probs=188.0
Q ss_pred CCCccccc-cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCc
Q 005754 81 DQGSTAKI-QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKR 152 (679)
Q Consensus 81 ~~~~~~~~-~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~ 152 (679)
.+++++.| +++++|+|||++|++||+++|+||||||||||||+|+|+..+ .+|+|.+||.++.. .+|++
T Consensus 6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEecccchhccchHHHHHHHHh
Confidence 34455566 678999999999999999999999999999999999998876 47899999976532 35778
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPR-----TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVS 227 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 227 (679)
+||++|++.|.+.+||.||+..+..-+.+. ....++.+..+-+.|+++|+.+.+.++.+ .|||||+|||+
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVa 157 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVA 157 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHH
Confidence 999999999999999999998765433221 12224445667788999999988776655 69999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+.+|+++|.|||+++|||.+++++|+.|+++++ +|.|||++.||.. -+.++|||++-|++|+++|+|+++++-
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhh
Confidence 99999999999999999999999999999999999986 5999999999965 588999999999999999999998865
Q ss_pred HH
Q 005754 307 SY 308 (679)
Q Consensus 307 ~~ 308 (679)
+.
T Consensus 237 ~~ 238 (258)
T COG3638 237 DE 238 (258)
T ss_pred HH
Confidence 44
No 23
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-47 Score=365.53 Aligned_cols=216 Identities=27% Similarity=0.427 Sum_probs=197.0
Q ss_pred CCCccccccccc-eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEE
Q 005754 81 DQGSTAKIQERT-ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFV 156 (679)
Q Consensus 81 ~~~~~~~~~~~~-iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv 156 (679)
..+++|+|+.++ +++||||+++.||+++|+|||||||||+|++|++++.|+ +|.|.++|.+..+ ..+++||.+
T Consensus 4 v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred eeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhccee
Confidence 445678888776 999999999999999999999999999999999999874 7999999977533 568899999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+.+..++..||++|||.|.+.+. .++..+.+++.+++.+.|+|.++.|+++| ++|.|+||||+|||||+++|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCC
Confidence 98889999999999999988774 45678888999999999999999998887 59999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
++++|||||||||..+...+.+.++++..+|++||++||.. +++.++||+|++|++|++++.|++++....
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999999999999999995 579999999999999999999999876543
No 24
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-46 Score=361.93 Aligned_cols=231 Identities=23% Similarity=0.395 Sum_probs=196.1
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISK 151 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~ 151 (679)
..+++...|+++.+|+|||+.|++++++|+|||||||||||||++....... ...+|+|.++|+++.. ++|+
T Consensus 9 ~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr 88 (253)
T COG1117 9 EVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRR 88 (253)
T ss_pred EecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHH
Confidence 4455666788899999999999999999999999999999999999875432 3478999999987532 5789
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
++|+|||.+..|| +|++||+.|+.++.. ..+++.+++|++.|+..+|-+ .+|. + ++...+||||||||++|||
T Consensus 89 ~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDr-L-~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 89 RVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDR-L-HKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHH-h-hCCccCCChhHHHHHHHHH
Confidence 9999999999999 899999999987643 223677888999999988854 3443 2 2456789999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
||+.+|+|||||||||+|||.+...|-+++.+|++ .-|||++||.+. ...+..|+..++..|+++++|+.+++
T Consensus 163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~i----- 235 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKI----- 235 (253)
T ss_pred HHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhh-----
Confidence 99999999999999999999999999999999984 689999999965 68899999999999999999999886
Q ss_pred HcCCCCCCCCChHHHH
Q 005754 311 SVGFSPSFPMNPADFL 326 (679)
Q Consensus 311 ~~g~~~~~~~n~ad~~ 326 (679)
|..|.+.-..||+
T Consensus 236 ---F~~P~~~~TedYi 248 (253)
T COG1117 236 ---FTNPKHKRTEDYI 248 (253)
T ss_pred ---hcCccHHHHHHHh
Confidence 3456656666664
No 25
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=9.1e-46 Score=352.28 Aligned_cols=210 Identities=27% Similarity=0.430 Sum_probs=186.6
Q ss_pred CCCCccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccC
Q 005754 80 DDQGSTAKIQE-RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISK 151 (679)
Q Consensus 80 ~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~ 151 (679)
.+++++|+|+. +++|+||||+|++||++-|+||||||||||||+|.+..+| ..|+|.++|.+... .+||
T Consensus 3 ~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 3 RFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhh
Confidence 34566677754 5599999999999999999999999999999999999887 47999999987532 4688
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
+||.||||..|++++||.||++|+.... ..+.++.++++.++|+.+||.+.++. .+.+|||||||||+||||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARA 151 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHH
Confidence 9999999999999999999999987653 35678889999999999999987653 567899999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
++.+|++||.||||.+|||..+.+|++++.++.+.|+||+++|||. .-+..+-.|++.|++|+++....
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999999995 45777888999999999987653
No 26
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.6e-45 Score=389.62 Aligned_cols=216 Identities=30% Similarity=0.489 Sum_probs=188.6
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEe
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVT 157 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~ 157 (679)
.++++++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..++++||++
T Consensus 10 i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 10 FRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred EEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEe
Confidence 344455566678999999999999999999999999999999999999864 7999999987532 3567899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+||+||+.|.+..+ ..+..+..++++++++.++|.+..+++++ +||||||||++||+||+.+|+
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999866543 23345556678899999999887776654 699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
+|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+-
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999888999999999965 68899999999999999999999887543
No 27
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-46 Score=356.52 Aligned_cols=219 Identities=26% Similarity=0.498 Sum_probs=195.7
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i 153 (679)
...+++.|+|++++++++||+++++||+++|+|||||||||.+.++.|+.+|+ +|.|.+|+.+.+. ..|..+
T Consensus 5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCc
Confidence 34567889999999999999999999999999999999999999999999875 7999999988653 345689
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 154 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
||+||++..|..|||+||+......+.. ...+.+.+.+++++|+.+++.|.++++- ..||||||||+.|||||+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa 155 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALA 155 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHh
Confidence 9999999999999999999877665531 2233466667899999999999887654 369999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
.+|+.++||||++|.||-+..+|.++++.|+++|..|++|.|+.. +...+|||.+++++|+++++|+|+++.+
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999999999999999976 5889999999999999999999998753
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-45 Score=392.19 Aligned_cols=210 Identities=26% Similarity=0.433 Sum_probs=184.8
Q ss_pred cccc-cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 85 TAKI-QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 85 ~~~~-~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.+|||+|++.
T Consensus 10 ~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~ 86 (356)
T PRK11650 10 RKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGRVVNELEPADRDIAMVFQNYA 86 (356)
T ss_pred EEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 3344 456799999999999999999999999999999999999886 47999999986532 23578999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+||++||+||+.|+...+ ..++.+..++++++++.+||.+..++ .+++|||||||||+|||||+.+|++|||
T Consensus 87 lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRvalARAL~~~P~llLL 158 (356)
T PRK11650 87 LYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAMGRAIVREPAVFLF 158 (356)
T ss_pred ccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999976432 23556667789999999999876654 4568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999999999875 999999999965 689999999999999999999998874
No 29
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.5e-44 Score=390.20 Aligned_cols=212 Identities=30% Similarity=0.480 Sum_probs=186.6
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|++... ..+|.+|||+|+..
T Consensus 10 l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p---~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~ 86 (353)
T TIGR03265 10 IRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ---TAGTIYQGGRDITRLPPQKRDYGIVFQSYA 86 (353)
T ss_pred EEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 33445556799999999999999999999999999999999999886 47999999976532 23678999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+||++||+||+.|+...+ ..++.+.+++++++++.+||++..++ .+++|||||||||+|||||+.+|+++||
T Consensus 87 lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 87 LFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999976532 23566677889999999999886654 4568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++|++++.|+++++.+
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999775 999999999965 6899999999999999999999988753
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-44 Score=369.91 Aligned_cols=211 Identities=34% Similarity=0.515 Sum_probs=180.4
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFV 156 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv 156 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.++|+
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v 82 (235)
T cd03261 6 LTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP---DSGEVLIDGEDISGLSEAELYRLRRRMGML 82 (235)
T ss_pred EEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccChhhHHHHhcceEEE
Confidence 33445556799999999999999999999999999999999999886 47999999976421 245679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|++.+++.+||+||+.+...... ..+.++..++++++++.+||.+..++. ++.|||||||||+||+||+.+|
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 83 FQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKKRVALARALALDP 155 (235)
T ss_pred ccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999988643211 123455567788999999998765544 4579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999874 899999999975 57889999999999999999988764
No 31
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.1e-44 Score=386.76 Aligned_cols=204 Identities=27% Similarity=0.402 Sum_probs=181.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
+.+|+||||+|++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|.+... ..++++||+||+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999864 7999999986532 2367899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.+..... ..++++.++++.++++.+||.+..|. ++++|||||||||+|||||+++|++|||||
T Consensus 95 ~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqkQRV~IARAL~~~P~iLLlDE 166 (343)
T TIGR02314 95 SSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred ccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9999999999875432 23456677789999999999886654 456899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+||+.++..+++.|++++++ |.|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 167 Pts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 167 ATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999875 999999999964 588999999999999999999988763
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-44 Score=388.26 Aligned_cols=211 Identities=25% Similarity=0.477 Sum_probs=185.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.+|||+|+..
T Consensus 12 l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~ 88 (351)
T PRK11432 12 ITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP---TEGQIFIDGEDVTHRSIQQRDICMVFQSYA 88 (351)
T ss_pred EEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 33445556799999999999999999999999999999999999986 47999999976532 23578999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+||++||+||+.|+...+ ..++.+.+++++++++.+||.+..+ +.++.|||||||||+|||||+.+|++|||
T Consensus 89 lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~-----r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 89 LFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFED-----RYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred cCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999986543 2355667788999999999987655 45668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999765 899999999965 688999999999999999999998864
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.2e-44 Score=389.55 Aligned_cols=214 Identities=25% Similarity=0.431 Sum_probs=186.4
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~ 160 (679)
+++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. ..|+|.++|++... ..++.+|||+|+.
T Consensus 10 ~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~ 88 (362)
T TIGR03258 10 HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHKRGLALLFQNY 88 (362)
T ss_pred EEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCEEEEECCEECCCCCHHHCCEEEEECCc
Confidence 34445555679999999999999999999999999999999999998742 12999999976532 2357899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+||.+||+||+.|+...+ ..++.+.+++++++++.+||++..++ .+++|||||||||+|||||+.+|++||
T Consensus 89 ~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 89 ALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAH-----LPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred ccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999976533 23556667789999999999886654 456799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR--GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+..+.++.+.|+++.++ |.|+|++|||+. ++..++|+|++|++|+++..|+++++.
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999876 899999999965 588999999999999999999998874
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3e-44 Score=385.87 Aligned_cols=218 Identities=30% Similarity=0.462 Sum_probs=189.8
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGF 155 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~y 155 (679)
+..++++++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..++.+||
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEE
Confidence 34455566666778999999999999999999999999999999999999864 7999999986532 35678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|++.+++.+||+||+.+....+ ..+..+..++++++++.++|.+..++.++ .||||||||++||+||+.+
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALIND 190 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998755443 12344455678889999999987776654 6999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.+.
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999888999999999965 68899999999999999999999987653
No 35
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.9e-44 Score=380.37 Aligned_cols=210 Identities=27% Similarity=0.422 Sum_probs=184.4
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILY 163 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~ 163 (679)
+|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+... ..++.+||++|++.++
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 356678999999999999999999999999999999999999864 7999999976432 3466799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.+.+..+ ..+..+..++++++++.+||.+..++.+ +.|||||||||+||+||+.+|++|||||
T Consensus 79 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 79 EDLTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999865543 2234455667899999999988766554 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+-
T Consensus 151 Pt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 151 PTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999999999888999999999965 68899999999999999999999887553
No 36
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-44 Score=357.57 Aligned_cols=203 Identities=32% Similarity=0.438 Sum_probs=178.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCC--CCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDD--ILYP 164 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~--~l~~ 164 (679)
.+|+|||+++++||.++|+|+||||||||.++|+|+.+| .+|+|.++|.+... ...+.+-+||||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p---~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP---SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC---CCceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 599999999999999999999999999999999999986 48999999976543 3577899999997 5889
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
..||++.|.-.... ...++.+ +++.++|+.+||.+. ..++++.+||||||||++|||||+.+|++||||||
T Consensus 98 ~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~----~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 98 RRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPS----FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred chhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHH----HHhcCchhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 99999998765432 2333333 348999999999863 34578889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||+||+..+.+|+++|.+++++ |.|.|++|||.. .+..+|||+++|++|++++.++..++.+
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999875 899999999965 5899999999999999999999988754
No 37
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=359.15 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=195.8
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i 153 (679)
...++++|++|+-.+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++.. ..+..+
T Consensus 5 L~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccc
Confidence 45678899999999999999999999999999999999999999999999974 7999999987542 346679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhc--------CCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHH
Q 005754 154 GFVTQDDILYPHLTVRETLVFCSLLR--------LPRT-LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 154 ~yv~Q~~~l~~~lTV~E~l~~~~~~~--------~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 224 (679)
+--||...+|++|||.||+..++..+ .+.. ...++..+++.++|+.+||.+.+|++.+ .||+||||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhH
Confidence 99999999999999999999875532 1111 1345667889999999999999998877 49999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChh
Q 005754 225 RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGS 303 (679)
Q Consensus 225 Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 303 (679)
|+.|||||+++|++|+||||.+||.+..+.++.+.|+++.++ |.||+++.||.. -++.+||||++|+.|++++.|+|+
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHH
Confidence 999999999999999999999999999999999999999984 799999999965 699999999999999999999999
Q ss_pred hHHH
Q 005754 304 EAMS 307 (679)
Q Consensus 304 ~~~~ 307 (679)
++.+
T Consensus 236 eV~~ 239 (250)
T COG0411 236 EVRN 239 (250)
T ss_pred HHhc
Confidence 9753
No 38
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.2e-44 Score=384.85 Aligned_cols=213 Identities=27% Similarity=0.445 Sum_probs=184.4
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l 162 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++... ..++.++||+|++.+
T Consensus 9 ~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l 85 (353)
T PRK10851 9 KKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYAL 85 (353)
T ss_pred EEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCccc
Confidence 33444567999999999999999999999999999999999998864 7999999986532 235689999999999
Q ss_pred CCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 163 YPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+|.+||+||+.|....+.. ...++++..++++++++.++|.+..++ ++++|||||||||+|||||+.+|++|||
T Consensus 86 ~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 86 FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999987543211 123455667789999999999876554 4568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++|++++.|+++++.
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999876 899999999975 589999999999999999999998874
No 39
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.1e-43 Score=385.54 Aligned_cols=207 Identities=28% Similarity=0.436 Sum_probs=182.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~ 165 (679)
|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.+|||+|++.+||.
T Consensus 24 ~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ 100 (375)
T PRK09452 24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP---DSGRIMLDGQDITHVPAENRHVNTVFQSYALFPH 100 (375)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECCCCCHHHCCEEEEecCcccCCC
Confidence 3446699999999999999999999999999999999999986 47999999986532 235789999999999999
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+||.||+.|+...+ ..++.+.+++++++++.+||.+..++ .+++|||||||||+|||||+.+|++|||||||
T Consensus 101 ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 101 MTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred CCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999999976432 23455666788999999999886654 45689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++|+++..|+++++.
T Consensus 173 s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 173 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999875 999999999965 688999999999999999999998864
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=360.09 Aligned_cols=209 Identities=28% Similarity=0.448 Sum_probs=179.8
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+.. ...++.++|++|++
T Consensus 6 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (220)
T cd03265 6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATVAGHDVVREPREVRRRIGIVFQDL 82 (220)
T ss_pred EEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecCcChHHHhhcEEEecCCc
Confidence 34445556799999999999999999999999999999999999876 4799999987542 23456799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||+||+.+....+ .....+..++++++++.+||.+..++. ++.||||||||++||+||+.+|++++
T Consensus 83 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la~al~~~p~lll 154 (220)
T cd03265 83 SVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEIARSLVHRPEVLF 154 (220)
T ss_pred cccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998865432 123444556789999999998766554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
|||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|++++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999876 899999999965 5888999999999999999988765
No 41
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.6e-43 Score=375.87 Aligned_cols=212 Identities=30% Similarity=0.457 Sum_probs=182.9
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+||+|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.+||++|++
T Consensus 10 l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~ 86 (303)
T TIGR01288 10 VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP---DRGKITVLGEPVPSRARLARVAIGVVPQFD 86 (303)
T ss_pred EEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECcccHHHHhhcEEEEeccc
Confidence 34445556799999999999999999999999999999999999876 47999999976422 3467899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||+||+.+....+ ..+..+.+++++++++.++|.+..++.+ ++||||||||++||+||+.+|++||
T Consensus 87 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 87 NLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred cCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998654332 1234445567788999999988766554 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999888999999999975 5889999999999999999999988754
No 42
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=357.89 Aligned_cols=206 Identities=34% Similarity=0.524 Sum_probs=175.8
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~ 160 (679)
+++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++
T Consensus 5 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 81 (213)
T cd03259 5 GLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP---DSGEILIDGRDVTGVPPERRNIGMVFQDY 81 (213)
T ss_pred eeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcCcCchhhccEEEEcCch
Confidence 344455556799999999999999999999999999999999999876 47999999976432 2356799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+|++||+.+..... .....+..++++++++.+||.+..++. +..||||||||++||++|+.+|++||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred hhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998764322 123444556788999999998766554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999986 4999999999965 578899999999999998765
No 43
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.4e-43 Score=380.64 Aligned_cols=208 Identities=27% Similarity=0.431 Sum_probs=184.3
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cc----cCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HI----SKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~----~~~i~yv~Q 158 (679)
+++++.+|+|+||+|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... .+ ++.++||+|
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 46678899999999999999999999999999999999999986 47999999976532 22 568999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.++|.+||+||+.|..... ..++++..+++.++++.+||++..++ +++.|||||||||+|||||+.+|++
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999876542 23456677889999999999876554 4567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||++||+.++..+.+.|+++.++ |+|||++||+.. ++.++||+|++|++|+++..|+++++.
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999999764 899999999965 588999999999999999999988764
No 44
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=384.01 Aligned_cols=206 Identities=26% Similarity=0.440 Sum_probs=182.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~l 166 (679)
+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... ..++.+|||+|++.+||++
T Consensus 30 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~l 106 (377)
T PRK11607 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHM 106 (377)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCC
Confidence 3456999999999999999999999999999999999999864 7999999976532 3467899999999999999
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
||.||+.|+...+ ..++.+.+++++++++.++|.+..+ +.+++|||||||||+|||||+.+|++|||||||+
T Consensus 107 tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~-----~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s 178 (377)
T PRK11607 107 TVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAK-----RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 178 (377)
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999976532 2345667778999999999987554 4566899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 247 GLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||+..+..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 179 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 179 ALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 9999999999999999876 4999999999965 688999999999999999999998874
No 45
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.4e-43 Score=361.05 Aligned_cols=214 Identities=29% Similarity=0.477 Sum_probs=180.5
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~ 157 (679)
+++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... . .++.++|++
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 81 (236)
T cd03219 5 GLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP---TSGSVLFDGEDITGLPPHEIARLGIGRTF 81 (236)
T ss_pred eeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence 344455556799999999999999999999999999999999999876 47999999976432 1 245699999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRT-------LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
|++.+++.+||+||+.+......... ....+..++++++++.+||++..++. ++.|||||||||+||+
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~ 156 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYGQQRRLEIAR 156 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHHHHHHHHHHH
Confidence 99999999999999988654321110 01334456788999999998765544 4579999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999999999999999999878999999999975 57889999999999999999988765
No 46
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-43 Score=355.32 Aligned_cols=204 Identities=31% Similarity=0.543 Sum_probs=176.5
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+.....++.++|++|++.+++
T Consensus 7 ~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~ 83 (210)
T cd03269 7 TKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKPLDIAARNRIGYLPEERGLYP 83 (210)
T ss_pred EEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCchhHHHHccEEEeccCCcCCc
Confidence 3344456799999999999999999999999999999999999876 4799999998765445678999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+||+||+.+....+ ..+..+..+.++++++.+|+.+..++. ++.||||||||++||++|+.+|++++||||
T Consensus 84 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 84 KMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred CCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999998865433 123344556788999999998766544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|
T Consensus 156 ~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999878999999999975 577899999999999998764
No 47
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=383.72 Aligned_cols=208 Identities=30% Similarity=0.482 Sum_probs=182.0
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYP 164 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~ 164 (679)
+|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..++.++||+|+..+++
T Consensus 12 ~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~ 88 (369)
T PRK11000 12 AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYP 88 (369)
T ss_pred EeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCC
Confidence 344567999999999999999999999999999999999999863 7999999976532 23567999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+||+||+.|....+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 89 ~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaLAraL~~~P~lLLLDEP 160 (369)
T PRK11000 89 HLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (369)
T ss_pred CCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999875432 224455667889999999998766544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||+.+++.+.+.|+++.++ |.|+|++||++. ++..+||++++|++|+++..|+++++.
T Consensus 161 ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999765 899999999965 588999999999999999999998874
No 48
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=360.29 Aligned_cols=206 Identities=30% Similarity=0.461 Sum_probs=182.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDD-ILYP 164 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~-~l~~ 164 (679)
+.+|+|+|+++++||.++|+||||||||||+++|+|+++|+ +|.|.++|.+.. ..+++++|||+|++ ..+-
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 47999999999999999999999999999999999999874 689999997643 35788999999997 3344
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.-||.|.++|+... ...+.++.+++++++++.+|+.+.++ +.+..|||||||||+||.+|+.+|++|+||||
T Consensus 94 ~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~-----r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEP 165 (235)
T COG1122 94 GPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEP 165 (235)
T ss_pred cCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhcc-----CCccccCCcceeeHHhhHHHHcCCCEEEEcCC
Confidence 56999999997653 24567788999999999999998765 45668999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
|||||+..+..+++.+++|.++ |+|||++|||.. .+..++||+++|++|+++++|++.++.+.
T Consensus 166 ta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 166 TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999887 799999999964 68999999999999999999998776543
No 49
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-43 Score=361.09 Aligned_cols=209 Identities=29% Similarity=0.443 Sum_probs=176.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~ 165 (679)
|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.
T Consensus 12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~ 88 (239)
T cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGEDATDVPVQERNVGFVFQHYALFRH 88 (239)
T ss_pred ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCccccceEEEecCCcccCC
Confidence 3446799999999999999999999999999999999999876 47999999976432 224679999999999999
Q ss_pred CCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 166 LTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
+||+||+.+....+.. ......+..++++++++.+||.+..++. +..|||||||||+||+||+.+|++||||||
T Consensus 89 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP 163 (239)
T cd03296 89 MTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 163 (239)
T ss_pred CCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999886432211 0012334456688899999998765544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 164 ~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 164 FGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999875 899999999975 57889999999999999999988765
No 50
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.3e-43 Score=359.08 Aligned_cols=211 Identities=30% Similarity=0.521 Sum_probs=180.5
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~ 157 (679)
+++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... . .++.++|++
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (232)
T cd03218 5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP---DSGKILLDGQDITKLPMHKRARLGIGYLP 81 (232)
T ss_pred EEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccCCHhHHHhccEEEec
Confidence 344455566799999999999999999999999999999999999876 37899999976421 1 235799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++. ++.||||||||++||++|+.+|+
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 82 QEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred CCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998764322 123344556788999999998765544 45799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+|||||+|||+.+++.+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 99999999999999999999999999888999999999975 58899999999999999999988765
No 51
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-43 Score=378.12 Aligned_cols=204 Identities=27% Similarity=0.402 Sum_probs=179.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
+.+|+|+||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++.+|||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP---TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 5699999999999999999999999999999999999986 47999999976532 2357899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.+....+ ..+..+.+++++++++.+||.+..++. ++.|||||||||+|||||+.+|++|||||
T Consensus 95 ~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~iLlLDE 166 (343)
T PRK11153 95 SSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999875432 234455567789999999998766544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 167 Pts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999765 899999999965 578899999999999999999987764
No 52
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.4e-43 Score=356.32 Aligned_cols=194 Identities=28% Similarity=0.459 Sum_probs=168.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
+.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 4699999999999999999999999999999999999876 47999999976421 2456899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||.||+.+....+ .....+.+++++++++.+||.+..++. +..|||||||||+|||||+.+|++|||||
T Consensus 93 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDE 164 (216)
T TIGR00960 93 SDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQQRVAIARAIVHKPPLLLADE 164 (216)
T ss_pred ccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999998865432 123344556788999999998766544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++
T Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 165 PTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999877999999999975 57789999999999974
No 53
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-43 Score=354.64 Aligned_cols=200 Identities=34% Similarity=0.497 Sum_probs=173.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+.+|+|+|++|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+.. ..++.++|++|++.+++.+||+|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGEPVT-GPGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECc-cccCcEEEEecccccccCCCHHH
Confidence 5799999999999999999999999999999999999876 4799999997653 34568999999999999999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+....+ ..+..+..++++++++.+||.+..++. ++.||||||||++||+||+.+|+++||||||+|||+
T Consensus 93 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 998865432 123344556788999999998765544 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEe--CCeEEEecChh
Q 005754 251 TAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLS--EGRCLYFGKGS 303 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 303 (679)
.++..+.+.|+++.+ .|+|||++||++. ++.++||++++|+ +|+++..++.+
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999965 5899999999975 5788999999999 79999887653
No 54
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=365.70 Aligned_cols=221 Identities=29% Similarity=0.397 Sum_probs=185.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--------ccccCcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------KHISKRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------~~~~~~i~yv~Q~~-- 160 (679)
+.+|+|||++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+.. ...++.+|||+|++
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 95 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP---TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPES 95 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEECccccccccHHHHHhhEEEEecCcch
Confidence 4699999999999999999999999999999999999886 4799999997642 13467899999986
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+++ .||.||+.|..... ..++.+.++++.++++.+||. +..+ +.++.||||||||++||++|+.+|++|
T Consensus 96 ~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~LSgGqkqrvaiA~aL~~~p~il 166 (288)
T PRK13643 96 QLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWE-----KSPFELSGGQMRRVAIAGILAMEPEVL 166 (288)
T ss_pred hccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhcc-----CCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 5565 69999999865421 234566677889999999996 3444 345689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCC
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSP 316 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~ 316 (679)
||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|++++..+ .++..|+.+
T Consensus 167 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 245 (288)
T PRK13643 167 VLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245 (288)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCC
Confidence 999999999999999999999999878999999999975 5778999999999999999999988743 455677777
Q ss_pred CCCCChHH
Q 005754 317 SFPMNPAD 324 (679)
Q Consensus 317 ~~~~n~ad 324 (679)
|.....++
T Consensus 246 p~~~~~~~ 253 (288)
T PRK13643 246 PKATHFAD 253 (288)
T ss_pred ChHHHHHH
Confidence 65444433
No 55
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.2e-43 Score=358.17 Aligned_cols=210 Identities=25% Similarity=0.381 Sum_probs=176.6
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc-----CCCCCeeeEEEECCCCccc------cccCc
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL-----HQGHGLTGTILTNNNKPTK------HISKR 152 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~-----~~~~~~~G~i~~~g~~~~~------~~~~~ 152 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +| .+|+|.++|.+... ..++.
T Consensus 6 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (227)
T cd03260 6 LNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIYDLDVDVLELRRR 82 (227)
T ss_pred EEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhhhcchHHHHHHhh
Confidence 344455567999999999999999999999999999999999998 54 47999999976421 24567
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
++|++|++.++ .+||+||+.+....+. .....+.+++++++++.+||.+..+.... +++||||||||++||++|
T Consensus 83 i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al 156 (227)
T cd03260 83 VGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARAL 156 (227)
T ss_pred EEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHH
Confidence 99999999888 7999999988654321 11222345678899999999876554320 467999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. ++.++||++++|++|++++.|++++
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999887 99999999975 5788999999999999999998765
No 56
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-43 Score=358.12 Aligned_cols=202 Identities=28% Similarity=0.413 Sum_probs=176.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILYP 164 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~~ 164 (679)
++|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 799999999999999999999999999999999999986 47899999976432 13567999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+|++||+.+....+ .....+..+.++++++.+||.+..++. ++.||||||||++||++|+.+|++++||||
T Consensus 96 ~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (233)
T cd03258 96 SRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQRVGIARALANNPKVLLCDEA 167 (233)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999998865432 123444556788999999998765544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 168 TSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999875 899999999965 57889999999999999999987765
No 57
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.9e-43 Score=371.70 Aligned_cols=211 Identities=26% Similarity=0.443 Sum_probs=183.9
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+... ..++.+||++|++
T Consensus 8 l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~ 84 (301)
T TIGR03522 8 LTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHN 84 (301)
T ss_pred EEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCC
Confidence 334455577999999999999999999999999999999999998864 7999999976532 3467899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++.+ +.||||||||++||+||+.+|++||
T Consensus 85 ~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 85 PLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred CCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999876543 1234455667899999999998776554 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+|||+.+++.+.+.|+++++ ++|||++||++. ++.++|||+++|++|++++.|++++...
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999965 799999999965 5889999999999999999999998755
No 58
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-43 Score=360.42 Aligned_cols=213 Identities=28% Similarity=0.474 Sum_probs=177.9
Q ss_pred ccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEE
Q 005754 84 STAKIQE-RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~~-~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~y 155 (679)
++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++.++|
T Consensus 6 l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 82 (241)
T cd03256 6 LSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGTDINKLKGKALRQLRRQIGM 82 (241)
T ss_pred EEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEeccccCHhHHHHHHhccEE
Confidence 3444544 6799999999999999999999999999999999999876 47999999976432 23567999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRL-----PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
++|++.+++.+||+||+.+...... ..........++++++++.++|.+..++ .++.|||||||||+||+
T Consensus 83 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLSGGQQQRVAIAR 157 (241)
T ss_pred EcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCCHHHHHHHHHHH
Confidence 9999999999999999987532100 0011122345667889999999875554 34579999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999999999999864 899999999975 57889999999999999999998775
No 59
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-43 Score=348.54 Aligned_cols=219 Identities=28% Similarity=0.509 Sum_probs=204.4
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~ 159 (679)
..++++|+++++.+++|+||++++|++++++|||||||||.+++|.|++.| .+|+|.++|.+.+...+.+|||.|.+
T Consensus 4 ~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~---~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 4 EIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP---TEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred EEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc---cCceEEEcCcchhhhhhhhcccChhh
Confidence 346788999999999999999999999999999999999999999999986 48999999999988889999999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
..|+|.+||.|.|.|.+.++ .+++++.++.++.+|+++++......+| ++||.|++|++.+..+++++|+++
T Consensus 81 RGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEE
Confidence 99999999999999998875 5788999999999999999988766554 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
+||||+|||||.+.+.+.+.+.+++++|.|||+++|.+ +.+.++||++++|++|+.|.+|+.+++..-|.
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999999999995 56999999999999999999999999987653
No 60
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5.4e-43 Score=352.91 Aligned_cols=204 Identities=28% Similarity=0.481 Sum_probs=174.9
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l 162 (679)
++.|+++.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 7 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~ 83 (213)
T cd03301 7 TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIYIGGRDVTDLPPKDRDIAMVFQNYAL 83 (213)
T ss_pred EEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCcccceEEEEecChhh
Confidence 3445556799999999999999999999999999999999999876 47999999976532 224579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|++||+.+....+ .....+.+++++++++.+|+.+..+.. ++.||||||||++||++|+.+|++++||
T Consensus 84 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 84 YPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred ccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998864332 123445556788999999998766554 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999874 899999999975 578899999999999999876
No 61
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-43 Score=334.79 Aligned_cols=200 Identities=32% Similarity=0.468 Sum_probs=176.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHHHH
Q 005754 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETL 172 (679)
Q Consensus 95 ~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l 172 (679)
-..++.|+.||++||+||||||||||||+|+|...| .+|+|++||++... -..|-++++||+..+|..|||.+|+
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNi 92 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNI 92 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC---CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhh
Confidence 367889999999999999999999999999999987 48999999988653 3567799999999999999999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 005754 173 VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252 (679)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~ 252 (679)
.++..-. -.-.++.+++++.++.++||..+.++ .+.+|||||||||++||+|+++-+|++||||+|+|||.-
T Consensus 93 gLGl~P~---LkL~a~~r~~v~~aa~~vGl~~~~~R-----LP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~L 164 (231)
T COG3840 93 GLGLSPG---LKLNAEQREKVEAAAAQVGLAGFLKR-----LPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164 (231)
T ss_pred cccCCcc---cccCHHHHHHHHHHHHHhChhhHhhh-----CccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHH
Confidence 8875422 12235667789999999999987654 456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 253 AYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 253 ~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+.+...++.++++ ++.|++++||+|+ ++.+++|+++++++|||.+.|+.++..
T Consensus 165 R~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 165 RAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999986 5899999999987 588999999999999999999987753
No 62
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.5e-43 Score=383.90 Aligned_cols=214 Identities=28% Similarity=0.467 Sum_probs=183.1
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEec
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQ 158 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q 158 (679)
+++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. +..++++|||+|
T Consensus 8 nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p---~sG~I~l~G~~i~~~~~~~~~~~ig~v~q 84 (402)
T PRK09536 8 DLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP---TAGTVLVAGDDVEALSARAASRRVASVPQ 84 (402)
T ss_pred eEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEEcCcCCHHHHhcceEEEcc
Confidence 344455567899999999999999999999999999999999999986 4799999997653 245678999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.+++.+||+||+.++....... ....++.+++++++++.+|+.+..++. +++||||||||++|||||+++|+
T Consensus 85 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 85 DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred CCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCC
Confidence 999989999999998854321100 001234456789999999998876654 45799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.++|||+++|++|++++.|+++++
T Consensus 160 iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999878999999999975 58899999999999999999999875
No 63
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.2e-43 Score=354.33 Aligned_cols=197 Identities=36% Similarity=0.558 Sum_probs=172.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCCCCCCH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~~~lTV 168 (679)
++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP---DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 699999999999999999999999999999999999876 47999999976532 345789999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
+||+.+....+ ..+..+..++++++++.+||.+..+.. ++.||||||||++|||||+.+|++|+|||||+||
T Consensus 96 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 167 (218)
T cd03266 96 RENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL 167 (218)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCC
Confidence 99998765432 123445567789999999998766554 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 249 DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|
T Consensus 168 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 168 DVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 999999999999999878999999999975 578899999999999998754
No 64
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6.6e-43 Score=354.04 Aligned_cols=202 Identities=31% Similarity=0.512 Sum_probs=175.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~~~lT 167 (679)
+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 6799999999999999999999999999999999999876 47999999976532 34567999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|+||+.+....+ ..+..+..++++++++.++|.+..++.+ +.||||||||++||++|+.+|++|||||||+|
T Consensus 92 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~ 163 (220)
T cd03263 92 VREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163 (220)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 999998865432 1233444567889999999987665544 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||+.+++.+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 164 LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 164 LDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999976 599999999975 47789999999999999999987753
No 65
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6.6e-43 Score=354.41 Aligned_cols=208 Identities=28% Similarity=0.467 Sum_probs=175.9
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEec
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVTQ 158 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~Q 158 (679)
++++|+++++|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... . .++.++|++|
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (222)
T cd03224 6 LNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDITGLPPHERARAGIGYVPE 82 (222)
T ss_pred EEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCCCCHHHHHhcCeEEecc
Confidence 34455556799999999999999999999999999999999999886 47999999976432 1 2467999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.+++.+|++||+.+...... ..+..++++++++.+ ++.+..++ .++.||||||||++|||||+.+|+
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 83 GRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQ-----LAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred ccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhC-----chhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999988653321 123345567788887 56665554 345799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999878899999999975 57899999999999999999987765
No 66
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-42 Score=357.23 Aligned_cols=210 Identities=29% Similarity=0.475 Sum_probs=179.2
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc------cccCcEEEEec
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+... ..++.++|++|
T Consensus 8 ~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 84 (240)
T PRK09493 8 SKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQ 84 (240)
T ss_pred EEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCChhHHHHhhceEEEec
Confidence 3344456799999999999999999999999999999999999876 47999999976431 23567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++.+||+||+.+..... ......+..++++++++.+||++..+.. ++.||||||||++||++|+.+|++
T Consensus 85 ~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 85 QFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred ccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999998754211 1123445556788999999998765544 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999877999999999975 57789999999999999999988765
No 67
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.5e-42 Score=358.32 Aligned_cols=210 Identities=32% Similarity=0.520 Sum_probs=178.4
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------------ccccCc
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------------KHISKR 152 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------------~~~~~~ 152 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+.. ...++.
T Consensus 10 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T PRK11264 10 VKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86 (250)
T ss_pred EEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccccccchhhHHHHhhhh
Confidence 3344456799999999999999999999999999999999999876 4799999986542 123567
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
++|++|++.+++.+||.||+.+...... .....+..++++++++.+||.+..++ .++.||||||||++||++|
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~Gq~qrv~la~al 159 (250)
T PRK11264 87 VGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRLSGGQQQRVAIARAL 159 (250)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhCChHHHHHHHHHHHH
Confidence 9999999999999999999987532111 12344455678899999999876554 4557999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999878999999999965 57889999999999999999988765
No 68
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-42 Score=364.78 Aligned_cols=215 Identities=28% Similarity=0.481 Sum_probs=180.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc------cccCcEEEEecCCC-CC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK------HISKRTGFVTQDDI-LY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~~~-l~ 163 (679)
+.+|+|||++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.+|||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP---TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 4699999999999999999999999999999999999886 47999999976532 34578999999863 33
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT--KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
...||+||+.|..... ..++++..++++++++.+||. +..+ +.++.||||||||++||+||+.+|++|||
T Consensus 97 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~~LSgGq~qrv~iAraL~~~P~llll 168 (287)
T PRK13637 97 FEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKD-----KSPFELSGGQKRRVAIAGVVAMEPKILIL 168 (287)
T ss_pred ccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhcc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3579999999865422 235566667889999999996 4444 44568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++|||+++|++|++++.|+++++.+ .....|+..|
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 169 DEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhCHHHHHHcCCCCC
Confidence 9999999999999999999999875 999999999965 5778999999999999999999988753 2334565544
No 69
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-42 Score=357.09 Aligned_cols=208 Identities=26% Similarity=0.517 Sum_probs=178.4
Q ss_pred ccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC
Q 005754 86 AKIQE-RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD 160 (679)
Q Consensus 86 ~~~~~-~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~ 160 (679)
++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++
T Consensus 8 ~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (242)
T cd03295 8 KRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGEDIREQDPVELRRKIGYVIQQI 84 (242)
T ss_pred EEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCeEcCcCChHHhhcceEEEccCc
Confidence 34444 5799999999999999999999999999999999999876 37899999976432 3456799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK--CENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
.+++.+||+||+.+....+ ....++..++++++++.+||.+ ..++ .++.|||||||||+|||||+.+|++
T Consensus 85 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~l 156 (242)
T cd03295 85 GLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQRVGVARALAADPPL 156 (242)
T ss_pred cccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999998865432 1234455567889999999985 4443 4567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 157 lllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 157 LLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999875 899999999975 57889999999999999999987765
No 70
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-42 Score=361.57 Aligned_cols=214 Identities=27% Similarity=0.405 Sum_probs=184.4
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c----ccCc
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H----ISKR 152 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~----~~~~ 152 (679)
..+++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... . .++.
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p---~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP---TSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccChhhhhhhhcCc
Confidence 34677889999999999999999999999999999999999999999886 37999999976431 1 1357
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ +.||||||||++||+||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral 175 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARAL 175 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHH
Confidence 999999999999999999998865332 1233445567889999999987666544 57999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999764 899999999965 578899999999999999999887753
No 71
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.6e-43 Score=359.36 Aligned_cols=213 Identities=28% Similarity=0.426 Sum_probs=177.1
Q ss_pred cccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEE
Q 005754 84 STAKIQ-ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~-~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~y 155 (679)
++++|+ ++++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|
T Consensus 7 l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 83 (243)
T TIGR02315 7 LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGTDITKLRGKKLRKLRRRIGM 83 (243)
T ss_pred eeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEEECCEEhhhCCHHHHHHHHhheEE
Confidence 344454 56799999999999999999999999999999999999876 47999999976431 23567999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRL-----PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
++|++.+++.+||+||+.+...... .......+.+++++++++.+||.+..+. .++.|||||||||+||+
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----RADQLSGGQQQRVAIAR 158 (243)
T ss_pred EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHH
Confidence 9999999999999999976432100 0001123345678889999999875554 34579999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|++++.
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999764 899999999975 57789999999999999999988764
No 72
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=9.5e-43 Score=349.97 Aligned_cols=201 Identities=31% Similarity=0.495 Sum_probs=173.0
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
++++|+++++|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++.
T Consensus 6 l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 82 (208)
T cd03268 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGKSYQKNIEALRRIGALIEAPG 82 (208)
T ss_pred EEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCCcccchHHHHhhEEEecCCCc
Confidence 33445556799999999999999999999999999999999999876 47999999986532 34567999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++.+||+||+.+....+. . ..++++++++.++|.+..++. ++.|||||||||+||++|+.+|+++||
T Consensus 83 ~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 83 FYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred cCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999988654221 1 134578899999998766554 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||||+|||+.+++.+.+.|++++++|+|||++||++. .+.+++|++++|++|++++.|
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 151 DEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999888999999999975 577899999999999998765
No 73
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-42 Score=363.02 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=179.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------------------------
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------------------------ 146 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------------------------ 146 (679)
..+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999864 699999875321
Q ss_pred ----ccccCcEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCH
Q 005754 147 ----KHISKRTGFVTQDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISG 220 (679)
Q Consensus 147 ----~~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 220 (679)
...++.+|||+|++ ..+...||+||+.|+.... ..++++..++++++++.+||. +..+ +.+..|||
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSg 168 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQ-----RSPFELSG 168 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh-----CChhhCCH
Confidence 13456899999985 2334579999999865422 235566677889999999996 4444 34567999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 221 GERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 221 GerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++. .+.++|||+++|++|++++.|
T Consensus 169 GqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g 247 (305)
T PRK13651 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDG 247 (305)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999878999999999964 578999999999999999999
Q ss_pred ChhhHHH---HHHHcCCCCC
Q 005754 301 KGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 301 ~~~~~~~---~f~~~g~~~~ 317 (679)
+++++.+ .....|...|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~p 267 (305)
T PRK13651 248 DTYDILSDNKFLIENNMEPP 267 (305)
T ss_pred CHHHHhcCHHHHHHCCCCCC
Confidence 9988643 2344555544
No 74
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.4e-42 Score=360.79 Aligned_cols=208 Identities=25% Similarity=0.409 Sum_probs=177.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQD 159 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~ 159 (679)
+|+++.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|+
T Consensus 16 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~ 92 (269)
T PRK11831 16 TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP---DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQS 92 (269)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccChhhHHHHhhcEEEEecc
Confidence 34456799999999999999999999999999999999999876 47999999875431 135679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++.+||.||+.+...... ..+..+..++++++++.+||.+..++. ++.|||||||||+||++|+.+|++|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~laral~~~p~ll 165 (269)
T PRK11831 93 GALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMARRAALARAIALEPDLI 165 (269)
T ss_pred cccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999987543211 123444556778899999998766554 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 166 MFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999765 899999999965 58889999999999999999988765
No 75
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.4e-42 Score=351.18 Aligned_cols=193 Identities=34% Similarity=0.528 Sum_probs=166.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~~l 162 (679)
+.+|+|+||++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 5799999999999999999999999999999999999876 47999999976432 124579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+....+ .....+..++++++++.+||.+..++. ++.||||||||++||+||+.+|++||||
T Consensus 94 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLD 165 (218)
T cd03255 94 LPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQQRVAIARALANDPKIILAD 165 (218)
T ss_pred CCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence 99999999999865432 122334456788999999998765544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
|||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .||++++|++|++
T Consensus 166 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 166 EPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 99999999999999999999987 59999999999754 54 9999999999974
No 76
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-42 Score=363.49 Aligned_cols=214 Identities=29% Similarity=0.441 Sum_probs=180.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--------ccccCcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------KHISKRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------~~~~~~i~yv~Q~~-- 160 (679)
+++|+|||++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|++.. ...++.+|||+|++
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP---TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 4699999999999999999999999999999999999886 3799999997652 13456799999986
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.++ ..||+||+.|..... ..+.++.+++++++++.+||. +..++ .++.|||||||||+||++|+.+|++|
T Consensus 97 ~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrv~lAraL~~~P~ll 167 (290)
T PRK13634 97 QLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELSGGQMRRVAIAGVLAMEPEVL 167 (290)
T ss_pred hhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 455 469999999865322 234555567789999999996 44444 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCC
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFS 315 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~ 315 (679)
||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.++|||+++|++|++++.|+++++.+ .+...++.
T Consensus 168 llDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 246 (290)
T PRK13634 168 VLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLD 246 (290)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCC
Confidence 999999999999999999999999765 999999999965 5889999999999999999999887642 34455665
Q ss_pred CC
Q 005754 316 PS 317 (679)
Q Consensus 316 ~~ 317 (679)
.|
T Consensus 247 ~~ 248 (290)
T PRK13634 247 LP 248 (290)
T ss_pred CC
Confidence 44
No 77
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=341.91 Aligned_cols=215 Identities=27% Similarity=0.448 Sum_probs=182.5
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEE
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTG 154 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~ 154 (679)
..+++...|+..++|++||+++++||+++|+||||+|||||||+|+|+.++ .+|+|.++|++.+. ..++.++
T Consensus 5 ~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~---~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEECCeecCCCCHHHHHhCCeE
Confidence 345666778899999999999999999999999999999999999999985 38999999988643 4577899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
||||...+||.|||+|||..++..+.. ++......+++.+.| .|.+.++++-| .|||||||.++|||||+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm 152 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALM 152 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHh
Confidence 999999999999999999987654321 112222266677766 35555555544 69999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
.+|++|+|||||.||-|.-.++|.+.|++++++ |.||+++.++.. ...+++||.++|.+|++++.|+.+++.+
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999999999999999999976 789999998855 5889999999999999999999988643
No 78
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.1e-42 Score=346.81 Aligned_cols=199 Identities=30% Similarity=0.444 Sum_probs=168.7
Q ss_pred Cccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCC
Q 005754 83 GSTAKIQE-RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~-~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~ 160 (679)
+++++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++
T Consensus 4 ~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE---SSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEhhhHHhhcceEEEecCh
Confidence 44556665 7899999999999999999999999999999999999876 47999999976532 3456799999997
Q ss_pred C-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 I-LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
. .+..+||+||+.+..... . ...++++++++.+||.+..++. ++.||||||||++|||||+.+|+++
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 81 DYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHHHHHhCCCEE
Confidence 4 344679999998754321 1 1124678899999998766554 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
||||||+|||+.+++.+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999878999999999975 577899999999999974
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-42 Score=359.45 Aligned_cols=215 Identities=27% Similarity=0.385 Sum_probs=179.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.+||++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP---QRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 4699999999999999999999999999999999999886 47999999976532 34567999999963 4456
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.||.||+.|..... ..++.+.+++++++++.+||.+..++. +..|||||||||+||+||+.+|++|||||||
T Consensus 95 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~~qrv~laraL~~~p~llllDEPt 166 (274)
T PRK13647 95 STVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166 (274)
T ss_pred CcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 89999998864321 234445566788999999998765544 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH--HHHHHcCCCCC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM--SYFESVGFSPS 317 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~--~~f~~~g~~~~ 317 (679)
+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|++++.. +.+...|...|
T Consensus 167 ~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 167 AYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHhcCHHHHHHcCCCCC
Confidence 999999999999999999877999999999965 577899999999999999999986532 23344455433
No 80
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-42 Score=354.81 Aligned_cols=212 Identities=24% Similarity=0.487 Sum_probs=180.3
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~ 157 (679)
+++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++
T Consensus 8 ~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (241)
T PRK10895 8 NLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR---DAGNIIIDDEDISLLPLHARARRGIGYLP 84 (241)
T ss_pred CcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCHHHHHHhCeEEec
Confidence 344455556799999999999999999999999999999999999876 47899999976432 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+||.||+.+....+ .....++.+.+++++++.+|+.+..+. .++.||||||||++||++|+.+|+
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 85 QEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred cCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998754322 112334455678899999999865544 445799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999878999999999964 58899999999999999999988765
No 81
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.7e-42 Score=354.93 Aligned_cols=210 Identities=26% Similarity=0.421 Sum_probs=176.9
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC--eeeEEEECCCCccc------cccCcEEEEe
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILTNNNKPTK------HISKRTGFVT 157 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~--~~G~i~~~g~~~~~------~~~~~i~yv~ 157 (679)
++|+++.+|+|+|++|++||+++|+||||||||||||+|+|+.+|+.. .+|+|.++|.+... ..++.++|++
T Consensus 9 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 88 (247)
T TIGR00972 9 LFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVF 88 (247)
T ss_pred EEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEe
Confidence 334445699999999999999999999999999999999999875311 27999999976431 2356899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT----KCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
|++.+++ +|+.||+.+....+ ...+..+..++++++++.+||. +..+ ..++.||||||||++|||+|+
T Consensus 89 q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 89 QKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAALWDEVKDRLH-----DSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred cCcccCC-CCHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCcchhhHhh-----CCcccCCHHHHHHHHHHHHHh
Confidence 9999988 99999998865432 1123445556788999999997 4333 345679999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999977 489999999975 57889999999999999999988775
No 82
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.5e-41 Score=364.03 Aligned_cols=211 Identities=29% Similarity=0.422 Sum_probs=180.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c---cc-CcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H---IS-KRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~---~~-~~i~yv~Q~~-- 160 (679)
..+|+||||+|++||+++|+|+||||||||+++|+|+++|+...+|+|.++|.+... . .+ +.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 469999999999999999999999999999999999998642348999999986532 1 22 4799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+.|.+|+.+++........ ..+..+..+++.++++.+||.+..+. .++++++|||||||||+||+||+.+|++||
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~LSgG~~QRv~IArAL~~~P~lli 184 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHEFSGGMRQRVMIAMALLCRPKLLI 184 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 68899999999976543321 23455666788999999999753322 246788999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||+|||+.++..+++.|++++++ |.|+|++|||+. .+.+++|++++|++|++++.|+++++.
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 185 ADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999875 999999999975 577899999999999999999988874
No 83
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.3e-42 Score=348.59 Aligned_cols=194 Identities=31% Similarity=0.505 Sum_probs=167.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDIL 162 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l 162 (679)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRL 90 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCHHHHHHHHhheEEEecChhh
Confidence 35699999999999999999999999999999999999876 47999999976432 235679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||.||+.+....+ .......+++++++++.++|.+..++. ++.||||||||++||++|+.+|+++|||
T Consensus 91 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~lllLD 162 (214)
T TIGR02673 91 LPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQRVAIARAIVNSPPLLLAD 162 (214)
T ss_pred ccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999998865432 123344556788999999998755544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 163 EPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999878999999999975 5888999999999885
No 84
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.2e-42 Score=355.34 Aligned_cols=214 Identities=28% Similarity=0.427 Sum_probs=180.0
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---------------
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------------- 146 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------------- 146 (679)
++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK10619 9 IDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIVVNGQTINLVRDKDGQLKVADKN 85 (257)
T ss_pred eeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccccccccccccccch
Confidence 3444445556799999999999999999999999999999999999876 4799999986542
Q ss_pred --ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHH
Q 005754 147 --KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 147 --~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 224 (679)
...++.++|++|++.+++.+||+||+.+...... .....+.++++.++++.+|+.+.. .++.++.|||||||
T Consensus 86 ~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~----~~~~~~~LS~G~~q 159 (257)
T PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERA----QGKYPVHLSGGQQQ 159 (257)
T ss_pred HHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhh----hhCCcccCCHHHHH
Confidence 1335689999999999999999999987432111 123445567788999999997642 12345689999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 225 RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 225 Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++..+|||+++|++|++++.|++++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999878999999999975 5778999999999999999998876
Q ss_pred H
Q 005754 305 A 305 (679)
Q Consensus 305 ~ 305 (679)
.
T Consensus 239 ~ 239 (257)
T PRK10619 239 L 239 (257)
T ss_pred h
Confidence 5
No 85
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.8e-42 Score=367.77 Aligned_cols=207 Identities=28% Similarity=0.416 Sum_probs=178.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~ 161 (679)
..+|+|||++|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+... ..++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 5699999999999999999999999999999999999886 37999999976532 2456899999997 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++|.+||.||+.+......+ ..++++.+++++++++.+||.+. +.++++++|||||||||+||+||+.+|++||+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~----~~~~~p~~LSgG~~QRv~iArAL~~~P~llil 185 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPN----LINRYPHEFSGGQCQRIGIARALILEPKLIIC 185 (331)
T ss_pred cCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChH----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88999999999886443211 23556667788999999999531 23456778999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++.++++.|+++.++ |.|||++|||+. .+.++||++++|++|++++.|+++++.
T Consensus 186 DEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 186 DEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999875 999999999965 578899999999999999999988764
No 86
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7e-42 Score=348.21 Aligned_cols=205 Identities=46% Similarity=0.778 Sum_probs=172.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCCHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|++++....+|+|.++|.+... ..++.++|++|++.+++.+||+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 679999999999999999999999999999999999987211258999999976532 4567899999999999999999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEA-VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
||+.+......+.........+++++ .++.+++.+..++ .++.||||||||++|||+|+.+|+++||||||+||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~illlDEP~~gL 174 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-----LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-----cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 99998654332221122223334555 8899998765544 45579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 249 DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|+.++..+.+.|++++++|.|+|++||++..++.++||++++|++|++++.|
T Consensus 175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999998779999999999755689999999999999998865
No 87
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=6.5e-42 Score=350.73 Aligned_cols=211 Identities=32% Similarity=0.504 Sum_probs=177.8
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++
T Consensus 7 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~ 83 (236)
T TIGR03864 7 LSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDLRRAPRAALARLGVVFQQP 83 (236)
T ss_pred eEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcccCChhhhhhEEEeCCCC
Confidence 33444556799999999999999999999999999999999999876 47999999975432 2235799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+|++||+.+....+ .....+..+.++++++.+||.+..++.+ +.||||||||++|||+|+.+|+++|
T Consensus 84 ~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lll 155 (236)
T TIGR03864 84 TLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLL 155 (236)
T ss_pred CCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888999999998765432 1234445567889999999987665544 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+|||+.++..+.+.|+++++ +|.|||++||++.. +. .+|++++|++|++++.|++++..+
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999985 58999999999764 54 599999999999999998876643
No 88
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=361.70 Aligned_cols=214 Identities=28% Similarity=0.419 Sum_probs=179.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--------------------cccc
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------------------KHIS 150 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------------------~~~~ 150 (679)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.. ...+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 46999999999999999999999999999999999999863 789999985532 1346
Q ss_pred CcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHH
Q 005754 151 KRTGFVTQDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVS 227 (679)
Q Consensus 151 ~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ 227 (679)
+.++||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+||. +..+ +.+..|||||||||+
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGqkqRva 186 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLE-----RSPFGLSGGQKRRVA 186 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhc-----CCcccCCHHHHHHHH
Confidence 7899999986 4665 49999998864321 234555667788999999996 4443 345679999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++|+++..|++++..+
T Consensus 187 iAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 187 IAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999999878999999999965 4778999999999999999999987642
Q ss_pred ---HHHHcCCCCC
Q 005754 308 ---YFESVGFSPS 317 (679)
Q Consensus 308 ---~f~~~g~~~~ 317 (679)
.++..|+..|
T Consensus 266 ~~~~~~~~~~~~p 278 (320)
T PRK13631 266 DQHIINSTSIQVP 278 (320)
T ss_pred CHHHHHHcCCCCC
Confidence 3455666655
No 89
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-42 Score=359.45 Aligned_cols=214 Identities=27% Similarity=0.421 Sum_probs=181.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC-CCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD-ILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~-~l~~~ 165 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA---ESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 4599999999999999999999999999999999999986 37899999976532 3456899999997 46777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+||+||+.|..... ..+.++..++++++++.+||++..+.. +..||||||||++||+||+.+|++|||||||
T Consensus 97 ~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 168 (279)
T PRK13650 97 ATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168 (279)
T ss_pred ccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 89999998864321 234555667789999999998765544 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
+|||+.++..+++.|++++++ |+|||++||++. .+ ..||++++|++|+++..|++++..+ .++..|+..|
T Consensus 169 ~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 169 SMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 999999999999999999875 999999999975 45 5899999999999999999887653 2445555544
No 90
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.9e-42 Score=346.77 Aligned_cols=194 Identities=30% Similarity=0.493 Sum_probs=168.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 5799999999999999999999999999999999999876 47999999875421 2456799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+|++||+.+....+ ....++..++++++++.+||++..++. +++||||||||++|||+|+.+|+++||||
T Consensus 91 ~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDE 162 (214)
T cd03292 91 PDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQRVAIARAIVNSPTILIADE 162 (214)
T ss_pred cCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999998865432 123444556788999999998765544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++
T Consensus 163 Pt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 163 PTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999877999999999975 57789999999999974
No 91
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-42 Score=346.41 Aligned_cols=201 Identities=31% Similarity=0.567 Sum_probs=172.4
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDIL 162 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l 162 (679)
++|+++.+|+|+|+++++| +++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 8 ~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 83 (211)
T cd03264 8 KRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP---SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGV 83 (211)
T ss_pred EEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCCccccchHHHHhheEEecCCCcc
Confidence 3444567999999999999 9999999999999999999999876 47999999976532 346789999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+....+ ..+..+..+.++++++.+||.+..++. +..||||||||++||+||+.+|+++|||
T Consensus 84 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 84 YPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred cccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998865432 123344456788999999998766554 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999986 599999999975 477899999999999998765
No 92
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=357.98 Aligned_cols=204 Identities=27% Similarity=0.435 Sum_probs=175.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~-- 160 (679)
+.+|+|||++|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+... ..++.+|||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 46999999999999999999999999999999999998863 7999999976421 3467899999986
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+++ .||.||+.|..... ..+..+..++++++++.+||. +..++ .++.||||||||++|||+|+.+|++|
T Consensus 97 ~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrv~laraL~~~p~il 167 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMSGGQMRKIAIVSILAMNPDII 167 (286)
T ss_pred ccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 4565 59999999864321 234556667789999999996 44443 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|++++.|+++++.+
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 168 VLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999976 4999999999965 5788999999999999999999887643
No 93
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-42 Score=352.47 Aligned_cols=205 Identities=22% Similarity=0.397 Sum_probs=173.8
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDDIL 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~~l 162 (679)
|+++.+|+|+|+++++||+++|+|||||||||||++|+|..+| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 15 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 91 (237)
T PRK11614 15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRV 91 (237)
T ss_pred eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEecCCCCHHHHHHhCEEEeccCccc
Confidence 3346799999999999999999999999999999999999876 47899999976432 235679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++.+||.||+.+..... ...+..+.++++++.+ ++.+..++ .++.||||||||++||++|+.+|++++|
T Consensus 92 ~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 92 FSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred CCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999998754211 1223344567777877 47654443 3457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999999999999999999888999999999965 588999999999999999999988763
No 94
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=348.55 Aligned_cols=199 Identities=31% Similarity=0.465 Sum_probs=170.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cc-cCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HI-SKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~-~~~i~yv~Q~~~l 162 (679)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... .. ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 4699999999999999999999999999999999999876 48999999976432 12 2579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+....+ ....++.+++++++++.+||.+..++. ++.||||||||++||++|+.+|++||||
T Consensus 99 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~lllLD 170 (233)
T PRK11629 99 LPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGERQRVAIARALVNNPRLVLAD 170 (233)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999998865432 123344556788999999998765544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||+|||+.++..+.+.|+++++ +|+|||++||++. ++.. +|++++|++|++++.|+.
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 171 EPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999976 5899999999975 3544 689999999999988764
No 95
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5e-42 Score=345.98 Aligned_cols=208 Identities=29% Similarity=0.467 Sum_probs=171.4
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI 161 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~ 161 (679)
++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. ..++.++|++|++.
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~-~~~~~i~~v~q~~~ 78 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIRVFGKPLE-KERKRIGYVPQRRS 78 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCccHH-HHHhheEEeccccc
Confidence 3456667667899999999999999999999999999999999999876 3799999997653 34668999999987
Q ss_pred CC--CCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 162 LY--PHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 162 l~--~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+. ..+||+||+.+....... .....++..++++++++.+|+.+..++. +..||||||||++||+||+.+|++
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCE
Confidence 63 337999999875432110 0011233456788999999998655544 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++| +++.|
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999878999999999965 578899999999876 66554
No 96
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=5.3e-42 Score=356.86 Aligned_cols=212 Identities=26% Similarity=0.448 Sum_probs=177.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---------cccCcEEEEe
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---------HISKRTGFVT 157 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---------~~~~~i~yv~ 157 (679)
+|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+.+.+|+|.++|.+... ..++.++|++
T Consensus 13 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~ 92 (262)
T PRK09984 13 TFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92 (262)
T ss_pred EeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEc
Confidence 3445679999999999999999999999999999999999998754557999999976421 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPR-----TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
|++.+++.+||.||+.+......+. ....++.+++++++++.+||.+..++. ++.|||||||||+|||||
T Consensus 93 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral 167 (262)
T PRK09984 93 QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----VSTLSGGQQQRVAIARAL 167 (262)
T ss_pred cccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----ccccCHHHHHHHHHHHHH
Confidence 9999999999999998753211000 011233456788999999998766554 457999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|++|++++.|++++
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 168 MQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred hcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999986 4899999999975 4789999999999999999998765
No 97
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-41 Score=350.30 Aligned_cols=213 Identities=27% Similarity=0.402 Sum_probs=178.2
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~ 157 (679)
+++++|+++++|+|+||++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.+... ..++.++|++
T Consensus 7 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 83 (242)
T TIGR03411 7 GLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKF 83 (242)
T ss_pred eeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEec
Confidence 3344455567999999999999999999999999999999999998763 7999999976432 1245699999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLP--R---TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
|++.+++.+||+||+.+....... . ....++..++++++++.+|+.+..++. ++.|||||||||+|||||
T Consensus 84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHH
Confidence 999999999999999885432100 0 012234456788999999998766544 457999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999999999999999999999999999976 789999999965 58889999999999999999987765
No 98
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=371.74 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=185.3
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c----ccC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H----ISK 151 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~----~~~ 151 (679)
...++.+.++...+|+|+||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+... . .++
T Consensus 30 ~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~ 106 (400)
T PRK10070 30 SKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRK 106 (400)
T ss_pred cHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhC
Confidence 3344566777778999999999999999999999999999999999999864 7999999976432 1 135
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
.++||+|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++ .++.|||||||||+||||
T Consensus 107 ~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~-----~~~~LSgGq~QRv~LArA 178 (400)
T PRK10070 107 KIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHS-----YPDELSGGMRQRVGLARA 178 (400)
T ss_pred CEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhc-----CcccCCHHHHHHHHHHHH
Confidence 7999999999999999999999875432 22345556778899999999876554 456799999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+++|++++|++|+++..|+++++.
T Consensus 179 L~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 179 LAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999976 5899999999965 588999999999999999999987763
No 99
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-42 Score=359.82 Aligned_cols=203 Identities=28% Similarity=0.392 Sum_probs=174.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--------ccccCcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------KHISKRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------~~~~~~i~yv~Q~~-- 160 (679)
+.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...++.++|++|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP---SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 4699999999999999999999999999999999999986 4799999997642 12356799999996
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.++ .+||.||+.+..... ....++..++++++++.+||. +..++. ++.||||||||++||++|+.+|++|
T Consensus 97 ~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lL 167 (287)
T PRK13641 97 QLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PFELSGGQMRRVAIAGVMAYEPEIL 167 (287)
T ss_pred hhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 355 579999998764322 234455667789999999996 455544 5579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 168 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 168 CLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999878999999999965 588999999999999999999988764
No 100
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.8e-42 Score=344.92 Aligned_cols=201 Identities=32% Similarity=0.511 Sum_probs=169.0
Q ss_pred Cccccccc--cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEE
Q 005754 83 GSTAKIQE--RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFV 156 (679)
Q Consensus 83 ~~~~~~~~--~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv 156 (679)
+++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+.. ...++.++|+
T Consensus 4 ~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred eEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEcccCCHHHHHhhceEE
Confidence 34455555 6799999999999999999999999999999999999876 4799999987542 1345679999
Q ss_pred ecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 157 TQDDI-LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 157 ~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
+|++. .++.+|++||+.+..... .....+..++++++++.+||.+..++. ++.||||||||++|||||+.+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcC
Confidence 99974 366789999998754322 123344456788899999998655544 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|+++||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999877999999999965 5788899999999885
No 101
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-42 Score=351.09 Aligned_cols=205 Identities=30% Similarity=0.450 Sum_probs=175.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----------ccccCcEEEEe
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----------KHISKRTGFVT 157 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----------~~~~~~i~yv~ 157 (679)
|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+.. ...++.++|++
T Consensus 12 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (242)
T PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVF 88 (242)
T ss_pred ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccccchhhHHHHHhheEEEe
Confidence 3345699999999999999999999999999999999999876 4799999997531 12356799999
Q ss_pred cCCCCCCCCCHHHHHHHH-hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 158 QDDILYPHLTVRETLVFC-SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
|++.+++.+||.||+.+. .... .....+..++++++++.+||.+..++. ++.||||||||++|||+|+.+|
T Consensus 89 q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 89 QQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999753 2211 123344456788999999998765544 4579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|++++
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999877999999999975 5778999999999999999998765
No 102
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=8.8e-42 Score=346.49 Aligned_cols=197 Identities=27% Similarity=0.422 Sum_probs=169.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDIL 162 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l 162 (679)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccCChhHHHHHHhheEEEecCccc
Confidence 35699999999999999999999999999999999999876 47999999975421 135689999999988
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|++||+.+....+ ..+.++..++++++++.+++.+..++ .++.||||||||++||+||+.+|++|+||
T Consensus 91 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllD 162 (222)
T PRK10908 91 LMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKN-----FPIQLSGGEQQRVGIARAVVNKPAVLLAD 162 (222)
T ss_pred cccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----CchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 88999999998865432 12344455667889999999875554 34579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
|||+|||+.+++.+.+.|++++++|.|||++||++. ++..++|++++|++|+++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 163 EPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999877999999999975 5788999999999999853
No 103
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=363.89 Aligned_cols=211 Identities=25% Similarity=0.337 Sum_probs=178.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC-CeeeEEEECCCCccc----c----ccCcEEEEecCC-
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH-GLTGTILTNNNKPTK----H----ISKRTGFVTQDD- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~-~~~G~i~~~g~~~~~----~----~~~~i~yv~Q~~- 160 (679)
..+|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|++... . .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987432 258999999986532 1 124699999997
Q ss_pred -CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 -ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 -~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+.|.+||.+++....... .....++.++++.++++.+||.+..+ ..++++++|||||||||+||+||+.+|++|
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LSgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLSGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 5789999999887654322 12345566778899999999975321 224567899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+||||+|||+.++.++++.|+++++ .|.|+|++|||+. .+.+++|+|++|++|++++.|+++++.
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999986 5999999999975 477899999999999999999988864
No 104
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=353.43 Aligned_cols=212 Identities=22% Similarity=0.361 Sum_probs=174.9
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|.. ..+|+|.++|.+... ..++.++|++|
T Consensus 21 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 100 (258)
T PRK14268 21 WYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQ 100 (258)
T ss_pred EeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEec
Confidence 3444679999999999999999999999999999999999987421 258999999976421 24567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++ +|++||+.+..... ..+..+.+++++++++.+|+.+.... .-+..++.|||||||||+|||||+.+|++
T Consensus 101 ~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~p~l 175 (258)
T PRK14268 101 KPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSD-RLKSPALSLSGGQQQRLCIARTLAVKPKI 175 (258)
T ss_pred CCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhh-hhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 998888 89999999864332 12344445668889999998422111 11234567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+||||||+|||+.++..+.+.|+++++ |+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 176 lllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 176 ILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999965 799999999965 57789999999999999999998775
No 105
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=356.15 Aligned_cols=209 Identities=24% Similarity=0.398 Sum_probs=176.2
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQD 159 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~ 159 (679)
++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...++.++|++|+
T Consensus 9 ~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 85 (271)
T PRK13638 9 FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP---QKGAVLWQGKPLDYSKRGLLALRQQVATVFQD 85 (271)
T ss_pred EEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CccEEEECCEEcccccCCHHHHHhheEEEeeC
Confidence 334456799999999999999999999999999999999999886 4799999997642 1235679999999
Q ss_pred CCC-CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 160 DIL-YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 160 ~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.. +...|+.||+.+..... ....++..++++++++.+||.+..++. ++.||||||||++||++|+.+|++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 86 PEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred hhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHHHHHHHHHHHcCCCE
Confidence 752 34568999998754322 123444556788899999998766554 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|++++..
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999877999999999975 577899999999999999999988764
No 106
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=351.54 Aligned_cols=215 Identities=25% Similarity=0.343 Sum_probs=177.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCcc----ccccCcEEEEecCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPT----KHISKRTGFVTQDD 160 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~ 160 (679)
+|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. .+.+|+|.++|.+.. ...++.++|++|++
T Consensus 12 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 91 (250)
T PRK14247 12 SFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIP 91 (250)
T ss_pred EECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccC
Confidence 344467999999999999999999999999999999999998742 135899999997643 23456899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||+||+.+....+.. .....+..+.++++++.+||.+.... ..+..+.+||||||||++|||||+.+|++++
T Consensus 92 ~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~p~lll 169 (250)
T PRK14247 92 NPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKD-RLDAPAGKLSGGQQQRLCIARALAFQPEVLL 169 (250)
T ss_pred ccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 888999999999886432211 11334455678899999998642111 1134466899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 170 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 170 ADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999965 899999999975 57789999999999999999998776
No 107
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=352.35 Aligned_cols=213 Identities=22% Similarity=0.309 Sum_probs=174.5
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~Q 158 (679)
+|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+. ..+|+|.++|.+.. ...++.++|++|
T Consensus 16 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 95 (254)
T PRK14273 16 FYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQ 95 (254)
T ss_pred EeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEee
Confidence 3444569999999999999999999999999999999999987631 24799999997642 134667999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++ +||+||+.+...... .....+.+++++++++.+++.+.... .-+..++.||||||||++|||+|+.+|++
T Consensus 96 ~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~l 171 (254)
T PRK14273 96 TPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKD-KLNTNALSLSGGQQQRLCIARTLAIEPNV 171 (254)
T ss_pred cccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHH-HHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 988885 899999988643321 11233445678888999987421100 11334568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||||+|||+.++..+++.|+++++ +.|||++||++. ++.+++||+++|++|+++..|+++++
T Consensus 172 llLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 172 ILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999964 799999999975 57889999999999999999998875
No 108
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=352.91 Aligned_cols=206 Identities=31% Similarity=0.455 Sum_probs=175.0
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+++|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.+... ..+.++|++|++.+++
T Consensus 8 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~-~~~~~~~v~q~~~~~~ 83 (255)
T PRK11248 8 YADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG-PGAERGVVFQNEGLLP 83 (255)
T ss_pred EEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC-CCCcEEEEeCCCccCC
Confidence 33444567999999999999999999999999999999999998763 7899999976532 3346899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+||+||+.+....+ .....+..++++++++.+||.+..++. +..||||||||++||++|+.+|++||||||
T Consensus 84 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 84 WRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred CCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999998764322 123444556788999999998765543 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEe--CCeEEEecChh
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLS--EGRCLYFGKGS 303 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 303 (679)
|+|||+.++..+.+.|+++++ +|+|||++||++. .+..+||++++|+ +|+++..++.+
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999864 5899999999975 5789999999998 59999887653
No 109
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6.7e-42 Score=344.85 Aligned_cols=202 Identities=31% Similarity=0.513 Sum_probs=171.6
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEe
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVT 157 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~ 157 (679)
++++|+++.+|+++|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+.. ...++.++|++
T Consensus 6 l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 82 (213)
T cd03262 6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKLTDDKKNINELRQKVGMVF 82 (213)
T ss_pred EEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCccchhHHHHHhcceEEe
Confidence 34445556799999999999999999999999999999999999876 4799999997542 12456899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+|++||+.+..... ......+..++++++++.+|+.+..++. ++.||||||||++||++|+.+|+
T Consensus 83 q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ 155 (213)
T cd03262 83 QQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMNPK 155 (213)
T ss_pred cccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998754211 1123444556788999999998765544 45799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
++||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++
T Consensus 156 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999888999999999975 57889999999999974
No 110
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=357.17 Aligned_cols=215 Identities=28% Similarity=0.437 Sum_probs=180.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecCCC-CC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQDDI-LY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~-l~ 163 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. ...++.+||++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p---~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 5699999999999999999999999999999999999876 4799999997642 134578999999973 33
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
...||+||+.+..... ..+..+..++++++++.+||.+..++. ++.||||||||++|||||+.+|++|||||
T Consensus 96 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrl~laraL~~~p~lLilDE 167 (283)
T PRK13636 96 FSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (283)
T ss_pred ccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4579999998864321 234555567789999999998765544 55799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.++|||+++|++|++++.|++++..+ .+...+.++|
T Consensus 168 Pt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 168 PTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLP 244 (283)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 99999999999999999999875 899999999965 4778999999999999999999987654 2334555444
No 111
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.3e-41 Score=351.84 Aligned_cols=210 Identities=28% Similarity=0.424 Sum_probs=178.1
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----------------c
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----------------K 147 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----------------~ 147 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+.. .
T Consensus 7 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~ 83 (252)
T TIGR03005 7 TKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQLYHMPGRNGPLVPADEKHLR 83 (252)
T ss_pred EEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccccccccccccchhHHH
Confidence 3344456799999999999999999999999999999999999876 4789999986542 1
Q ss_pred cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHH
Q 005754 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVS 227 (679)
Q Consensus 148 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 227 (679)
..++.++|++|++.+++.+|+.||+.+..... ......+..+.++++++.+|+.+..+. .++.||||||||++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 84 QMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADH-----MPAQLSGGQQQRVA 156 (252)
T ss_pred HHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhc-----ChhhcCHHHHHHHH
Confidence 23568999999999999999999998753211 112344455678899999999875554 45579999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||++|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999875 899999999975 57789999999999999999987765
No 112
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=351.51 Aligned_cols=212 Identities=23% Similarity=0.349 Sum_probs=173.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCccc------cccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTK------HISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.. +....+|+|.++|++... ..++.++|++|+
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 95 (253)
T PRK14242 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQK 95 (253)
T ss_pred ECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecC
Confidence 334569999999999999999999999999999999999864 211358999999976421 235689999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++ .||+||+.+....+. ....+...++++++++.+|+.+...... ++.++.|||||||||+|||+|+.+|++|
T Consensus 96 ~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~ll 171 (253)
T PRK14242 96 PNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVL 171 (253)
T ss_pred CCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 98888 599999988653321 1123344567888999999854221111 3456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 172 LMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999954 799999999975 57889999999999999999988765
No 113
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=351.69 Aligned_cols=215 Identities=25% Similarity=0.376 Sum_probs=177.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCcc------ccccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPT------KHISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~ 159 (679)
|+++++|+|+|+++++||+++|+||||||||||+++|+|+++|+ ...+|+|.++|.+.. ...++.++|++|+
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (253)
T PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQY 93 (253)
T ss_pred eCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecC
Confidence 33456999999999999999999999999999999999998763 125899999997643 1345679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++.+||.||+.+....+. ...+.++..++++++++.+|+.+.... .-+..++.||||||||++|||||+.+|+++
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14267 94 PNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKD-RLNDYPSNLSGGQRQRLVIARALAMKPKIL 171 (253)
T ss_pred CccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhh-hhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999987653221 011234445667889999998532111 113456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 172 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 172 LMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999975 699999999975 578899999999999999999987753
No 114
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-42 Score=354.17 Aligned_cols=210 Identities=29% Similarity=0.484 Sum_probs=176.9
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD 160 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~ 160 (679)
+++|+++.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++
T Consensus 9 ~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (258)
T PRK13548 9 SVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWSPAELARRRAVLPQHS 85 (258)
T ss_pred EEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcccCCHHHhhhheEEEccCC
Confidence 3344456799999999999999999999999999999999999876 47999999975422 2356799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh------h
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML------I 234 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~------~ 234 (679)
.+++.+||+||+.+..... ....++..++++++++.+||.+..++. +..|||||||||+||++|+ .
T Consensus 86 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 86 SLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred cCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCC
Confidence 8888899999998754221 112233445678899999998765554 4579999999999999999 5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999999999998 57999999999965 577899999999999999999887653
No 115
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.5e-41 Score=349.22 Aligned_cols=215 Identities=30% Similarity=0.361 Sum_probs=175.9
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCCCccc----c-ccCcEEE
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPTK----H-ISKRTGF 155 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g~~~~~----~-~~~~i~y 155 (679)
+++++|+++.+|+|+|++|++||+++|+||||||||||||+|+|+. +| .+|+|.++|.+... . .+..++|
T Consensus 5 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (243)
T TIGR01978 5 DLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEPDERARAGLFL 81 (243)
T ss_pred eEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCHHHhhccceEe
Confidence 3444555567999999999999999999999999999999999985 33 47999999976432 1 2345899
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCC--C--CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHH
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLP--R--TLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~--~--~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
++|++.+++.+|++|++.+....... . ..+..+..++++++++.+||.+ ..++.+. ..||||||||++||+
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQ 157 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHH
Confidence 99999999999999999875432110 0 1123344567889999999973 4443322 249999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhhH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+... ||++++|++|++++.|+++++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 999999999999999999999999999999999878999999999975 46677 899999999999999988754
No 116
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.1e-41 Score=346.82 Aligned_cols=198 Identities=32% Similarity=0.465 Sum_probs=165.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--CC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--IL 162 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~l 162 (679)
.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 699999999999999999999999999999999999876 47899999976432 3456899999998 56
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSI-AEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
++.+||+||+.+....... ....+..+. ++++++.+++. +..+. .+..||||||||++|||+|+.+|++||
T Consensus 96 ~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lll 168 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSGGQRQRVAIARALALNPKLLI 168 (228)
T ss_pred CCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 7789999999876433211 112222222 36789999995 44443 445799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||||+|||+.+++.+.+.|++++++ |+|||++||++. .+.++||++++|++|+++..|
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999876 899999999975 577799999999999998754
No 117
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.3e-41 Score=367.01 Aligned_cols=212 Identities=24% Similarity=0.379 Sum_probs=184.7
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCC----Ccc----c---cc-c
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN----KPT----K---HI-S 150 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~----~~~----~---~~-~ 150 (679)
...++++...+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+ +.. . .. +
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p---~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV---SRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEecccccccCCHHHHHHHhc
Confidence 345678889999999999999999999999999999999999999986 4799999985 221 1 12 2
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
++++||+|++.++|.+||+||+.++...+ ..++.+.+++++++++.+||.+..+.. +..|||||||||+|||
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLAR 177 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHH
Confidence 57999999999999999999999875432 234566677889999999998766554 4579999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++|||+. ++.+++||+++|++|+++..|+++++.
T Consensus 178 ALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 178 AFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999875 999999999965 588999999999999999999998764
No 118
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=351.62 Aligned_cols=211 Identities=25% Similarity=0.371 Sum_probs=176.1
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEecCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVTQDD 160 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~Q~~ 160 (679)
++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... . .+..++|++|++
T Consensus 13 ~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 89 (255)
T PRK11300 13 MRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTILLRGQHIEGLPGHQIARMGVVRTFQHV 89 (255)
T ss_pred EEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEEECCEECCCCCHHHHHhcCeEEeccCc
Confidence 334456799999999999999999999999999999999999876 47999999976432 1 234689999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHH
Q 005754 161 ILYPHLTVRETLVFCSLLRLP----------RTL--STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSI 228 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 228 (679)
.+++.+||+||+.+....... ... ...+..+.++++++.+||.+..++. ++.||||||||++|
T Consensus 90 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~l 164 (255)
T PRK11300 90 RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ-----AGNLAYGQQRRLEI 164 (255)
T ss_pred ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC-----hhhCCHHHHHHHHH
Confidence 999999999999985421100 000 1123345678889999998765544 45799999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 229 AHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 229 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 165 a~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 165 ARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHHH
Confidence 99999999999999999999999999999999999875 899999999965 57899999999999999999988765
No 119
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=355.98 Aligned_cols=203 Identities=29% Similarity=0.425 Sum_probs=175.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCCC-CCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDDI-LYP 164 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~~-l~~ 164 (679)
+.+|+|+||+|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+.. ...++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 5699999999999999999999999999999999999876 4799999997653 234567999999975 366
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
..|+.||+.+..... ..+..+..++++++++.+||.+..++. ++.||||||||++||+||+.+|++||||||
T Consensus 92 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP 163 (274)
T PRK13644 92 GRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQCVALAGILTMEPECLIFDEV 163 (274)
T ss_pred cchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 689999998764322 234555566788999999998766654 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||+.++..+.+.|++++++|.|||++||++. ++ ..||++++|++|++++.|++++..
T Consensus 164 t~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 164 TSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999878999999999976 45 579999999999999999988763
No 120
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2e-41 Score=344.13 Aligned_cols=205 Identities=32% Similarity=0.460 Sum_probs=175.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY 163 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~ 163 (679)
++++++++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+......+.++|++|++.++
T Consensus 6 v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~ 82 (223)
T TIGR03740 6 LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGHPWTRKDLHKIGSLIESPPLY 82 (223)
T ss_pred EEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEeccccccccEEEEcCCCCcc
Confidence 34445556799999999999999999999999999999999999876 479999999765432235799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+|++||+.+....+. .. .+++.++++.+||.+..+.. +..||||||||++|||+|+.+|++++|||
T Consensus 83 ~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 83 ENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred ccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999999987654321 11 23577889999998765544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|++.+
T Consensus 151 P~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 151 PTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999878999999999975 5788999999999999999998753
No 121
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=353.30 Aligned_cols=211 Identities=26% Similarity=0.426 Sum_probs=177.0
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI 161 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~ 161 (679)
++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|+..
T Consensus 10 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 86 (255)
T PRK11231 10 VGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSRQLARRLALLPQHHL 86 (255)
T ss_pred EEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEEEECCEEhHHCCHHHHhhheEEecccCC
Confidence 344456799999999999999999999999999999999999876 47899999976422 34567999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+++.+|+.||+.++...... ......+..++++++++.+||.+..++. ++.||||||||++||+||+.+|++||
T Consensus 87 ~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 87 TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88889999999875311000 0111233445678899999998766554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 162 LDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999877999999999975 58899999999999999999987765
No 122
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=352.62 Aligned_cols=196 Identities=30% Similarity=0.432 Sum_probs=169.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+++.+|+|+|++|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+. ...++.++|++|++.+++.+||
T Consensus 23 ~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~-~~~~~~i~~v~q~~~l~~~~tv 98 (257)
T PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP---SAGELLAGTAPL-AEAREDTRLMFQDARLLPWKKV 98 (257)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEH-HHhhCceEEEecCccCCCCCcH
Confidence 345699999999999999999999999999999999999876 379999988654 2346789999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
+||+.+... . ...++++++++.+||.+..+.. +..||||||||++||++|+.+|+++||||||+||
T Consensus 99 ~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 99 IDNVGLGLK-------G--QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred HHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 999987421 0 1235678899999998765543 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChh
Q 005754 249 DSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGS 303 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 303 (679)
|+.++..+.+.|+++.+ .|+|||++||++. .+.++||++++|++|++++.|+.+
T Consensus 165 D~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999865 5899999999975 577899999999999999887653
No 123
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=349.16 Aligned_cols=211 Identities=30% Similarity=0.428 Sum_probs=182.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC-CC-CCeeeEEEECCCCcc---c-c----ccCcEEEEecCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH-QG-HGLTGTILTNNNKPT---K-H----ISKRTGFVTQDD 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~-~~-~~~~G~i~~~g~~~~---~-~----~~~~i~yv~Q~~ 160 (679)
..+++||||++++||++||+|.|||||||+.++|.|+++ +. ...+|+|.++|++.. + + ..+.|++|||++
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 569999999999999999999999999999999999997 32 236789999998642 1 1 235799999996
Q ss_pred --CCCCCCCHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 161 --ILYPHLTVRETLVFCSLLRLPRTL-STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 161 --~l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
.|-|.+||.+.+.-..... ... .+++.++++.++|+.+||.+... +.+.++++|||||||||.||.||+.+|+
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCC
Confidence 6889999999887655432 122 45677888999999999986422 4567999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||.||||++||...+.+|+++|+++++ .|.++|++|||+. -+.++||||.||..|++|+.|+.+++.
T Consensus 174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 9999999999999999999999999987 5999999999976 589999999999999999999998764
No 124
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=354.84 Aligned_cols=214 Identities=27% Similarity=0.410 Sum_probs=180.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC-CCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD-ILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~-~l~~~ 165 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++ .+++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP---EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 4699999999999999999999999999999999999986 47999999976532 3456799999997 36777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.||.||+.+..... ..+.++.+++++++++.+||.+..++. ++.||||||||++||++|+.+|++|||||||
T Consensus 97 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt 168 (279)
T PRK13635 97 ATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168 (279)
T ss_pred ccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998864332 234455567789999999998766654 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
+|||+.++..+++.|++++++ |+|||++||++. ++. .||++++|++|++++.|+++++.+ .+...+..+|
T Consensus 169 ~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 169 SMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999999876 899999999975 454 599999999999999999887653 3444455433
No 125
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-41 Score=354.01 Aligned_cols=203 Identities=30% Similarity=0.419 Sum_probs=172.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~-- 160 (679)
+++|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 4699999999999999999999999999999999999876 47999999975421 2456799999996
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+++ .||+||+.+..... ..+.++..++++++++.+||.+ ..+. .++.||||||||++||+||+.+|++|
T Consensus 97 ~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~ll 167 (280)
T PRK13649 97 QLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELSGGQMRRVAIAGILAMEPKIL 167 (280)
T ss_pred hhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 4555 69999998764322 1234455567888999999973 3443 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.+++.+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 168 VLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999877999999999975 578899999999999999999988763
No 126
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-41 Score=355.01 Aligned_cols=207 Identities=29% Similarity=0.430 Sum_probs=177.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+.+..|+|.++|.+... ..++.+||++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 459999999999999999999999999999999999998765456999999986532 34568999999974 6777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.||+||+.|..... ..+.++..++++++++.+||.+..++ .++.||||||||++||+||+.+|++|||||||
T Consensus 100 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~qrv~laral~~~P~llllDEPt 171 (282)
T PRK13640 100 ATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDEST 171 (282)
T ss_pred CCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 89999998754321 23455666778999999999876554 45679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|+++++.+
T Consensus 172 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999865 9999999999764 5 5799999999999999999987643
No 127
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.4e-41 Score=342.79 Aligned_cols=194 Identities=32% Similarity=0.506 Sum_probs=165.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c---cc-CcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H---IS-KRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~---~~-~~i~yv~Q~~~l 162 (679)
+++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... . .+ +.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP---TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 4699999999999999999999999999999999999876 47999999976432 1 12 579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+....+ .....+..+++.++++.+||.+..++. ++.||||||||++|||+|+.+|++||||
T Consensus 95 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlD 166 (221)
T TIGR02211 95 LPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGERQRVAIARALVNQPSLVLAD 166 (221)
T ss_pred CCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999998864332 123334456778999999998765544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
|||+|||+.++..+.+.|++++++ |+|||++||++. .+ ..+|++++|++|+++
T Consensus 167 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 167 EPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999999999999864 899999999975 45 458999999999975
No 128
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=348.28 Aligned_cols=213 Identities=23% Similarity=0.328 Sum_probs=174.3
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc---CCCCCeeeEEEECCCCccc------cccCcEEEEe
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL---HQGHGLTGTILTNNNKPTK------HISKRTGFVT 157 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~---~~~~~~~G~i~~~g~~~~~------~~~~~i~yv~ 157 (679)
+|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++ ...+|+|.++|.+... ..++.++|++
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 90 (250)
T PRK14245 12 WYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA-TRLEGEIRIDGRNIYDKGVQVDELRKNVGMVF 90 (250)
T ss_pred EECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC-CCCceEEEECCEecccccccHHHHhhheEEEe
Confidence 344567999999999999999999999999999999999973 32 1247999999976532 3456799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++ .|+.||+.+....+. ....+...+.++++++.+||.+...... +..++.||||||||++|||+|+.+|+
T Consensus 91 q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~ 166 (250)
T PRK14245 91 QRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPS 166 (250)
T ss_pred cCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9998887 699999987644321 1122334566788999999864321111 24466899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
++||||||+|||+.++..+.+.|++++ +++|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 167 lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 167 VLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999995 4799999999975 578899999999999999999988763
No 129
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.4e-39 Score=400.03 Aligned_cols=219 Identities=27% Similarity=0.406 Sum_probs=190.6
Q ss_pred cCCCCcccccc--ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcE
Q 005754 79 TDDQGSTAKIQ--ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i 153 (679)
+..++++++|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+... ..++.+
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcE
Confidence 34456666663 467999999999999999999999999999999999999864 7999999976532 346789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 154 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
||++|++.+++.+||+||+.+.+.++. .+.++.+++++++++.+||++.+|+.+ ++|||||||||+||+||+
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999766542 234455677899999999988766554 579999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
.+|+++||||||+|||+.+++.+.++|++++ +|+|||++||++. ++..++||+++|++|+++..|++.++.+.|.
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence 9999999999999999999999999999995 5999999999965 6888999999999999999999999887663
No 130
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-41 Score=354.10 Aligned_cols=204 Identities=31% Similarity=0.490 Sum_probs=175.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+.+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+... ..++.++|++|++. .+..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 4599999999999999999999999999999999999886 47999999976432 34567999999973 3345
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.||.||+.+..... ....+...++++++++.+||.+..++. ++.||||||||++||+||+.+|++|||||||
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrl~laraL~~~p~llilDEPt 165 (277)
T PRK13652 94 PTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT 165 (277)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 79999998754321 234455566788999999998766554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|||+.++..+.+.|++++++ |.|||++||++. ++.+.|||+++|++|++++.|++++..
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 166 AGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999875 899999999975 578899999999999999999998874
No 131
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.1e-41 Score=365.43 Aligned_cols=208 Identities=30% Similarity=0.467 Sum_probs=178.6
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~y 155 (679)
++++|+++. + |+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|
T Consensus 5 l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 5 FSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP---DEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECccCccccccchhhCCeEE
Confidence 445666555 4 99999999999999999999999999999999886 37999999976421 23567999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|++.+++.+||+||+.|+.... ...+.+++++++++.+||.+..++. ++.|||||||||+|||||+.+
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999865321 2234456788999999998766554 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..++|++++|++|+++..|+++++..
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9999999999999999999999999999875 899999999975 5888999999999999999999887643
No 132
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=353.07 Aligned_cols=213 Identities=24% Similarity=0.363 Sum_probs=176.9
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQD 159 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~ 159 (679)
++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+.. ...++.++|++|+
T Consensus 17 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 93 (265)
T PRK10575 17 VSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEILLDAQPLESWSSKAFARKVAYLPQQ 93 (265)
T ss_pred EEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEehhhCCHHHHhhheEEeccC
Confidence 33344456799999999999999999999999999999999999876 4799999997542 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 160 DILYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.+++.+||.||+.+........ ........++++++++.++|.+..++. ++.|||||||||+||+||+.+|++
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 94 LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred CCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 88889999999998753211000 011123345688999999998755554 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 169 llLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999765 899999999965 57889999999999999999987765
No 133
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-41 Score=348.12 Aligned_cols=215 Identities=22% Similarity=0.368 Sum_probs=176.8
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEEEEe
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTGFVT 157 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~yv~ 157 (679)
++|+++.+|+|+|++|++||+++|+||||||||||+++|+|+.+ |+.+.+|+|.++|.+.. ...++.++|++
T Consensus 12 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~ 91 (252)
T PRK14256 12 VHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVF 91 (252)
T ss_pred EEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEe
Confidence 34444679999999999999999999999999999999999975 32235799999997642 13467899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+|++||+.+..... ......+.+++++++++.+++.+...... +..++.||||||||++||++|+.+|+
T Consensus 92 q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~ 168 (252)
T PRK14256 92 QKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPE 168 (252)
T ss_pred cCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998754321 11223444566888999999864211111 23466899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 169 llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 169 VILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999976 689999999965 57899999999999999999998775
No 134
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-41 Score=351.55 Aligned_cols=213 Identities=32% Similarity=0.467 Sum_probs=178.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc------cccCcEEEEecCCC-CC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK------HISKRTGFVTQDDI-LY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~~~-l~ 163 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP---TSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 4699999999999999999999999999999999999876 37999999976421 23567999999963 33
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
...||.||+.+..... ...+++..+++.++++.+||.+..++. ++.||||||||++||++|+.+|++++|||
T Consensus 92 ~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~llllDE 163 (275)
T PRK13639 92 FAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDE 163 (275)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3479999998754321 223455566788999999998766654 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCC
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFS 315 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~ 315 (679)
||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|++++..+ ..+..|..
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 237 (275)
T PRK13639 164 PTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLR 237 (275)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcChHHHHhcCCC
Confidence 99999999999999999999877999999999965 5778999999999999999999988643 33444544
No 135
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-41 Score=361.04 Aligned_cols=213 Identities=22% Similarity=0.269 Sum_probs=175.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCCCccc----c----ccCcEEEEecCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-HGLTGTILTNNNKPTK----H----ISKRTGFVTQDDI 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-~~~~G~i~~~g~~~~~----~----~~~~i~yv~Q~~~ 161 (679)
+.+|+||||+|++||+++|+|+||||||||+++|+|+.++. ...+|+|.++|++... . .++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 56999999999999999999999999999999999998642 1358999999976421 1 1347999999975
Q ss_pred --CCCCCCHHHHHHHHhhhcCCC--C-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 162 --LYPHLTVRETLVFCSLLRLPR--T-LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 162 --l~~~lTV~E~l~~~~~~~~~~--~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+.|.+||.+++.......... . ....+.++++.++|+.+||.+..+ ..++++++|||||||||+||+||+.+|
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P 177 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALANQP 177 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHCCC
Confidence 678899999997642211000 0 112344567889999999975322 224567889999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
++|||||||+|||+.++.+++++|+++.++ |.|||++|||+. .+.+++|++++|++|++++.|+++++.
T Consensus 178 ~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 178 RLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999875 999999999965 578999999999999999999987763
No 136
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-41 Score=346.79 Aligned_cols=219 Identities=22% Similarity=0.319 Sum_probs=178.0
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEe
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVT 157 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~ 157 (679)
+++++.|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++....+|+|.++|++... ..++.++|++
T Consensus 6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 85 (246)
T PRK14269 6 TNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85 (246)
T ss_pred eeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEe
Confidence 344455556679999999999999999999999999999999999875322358999999976532 3456799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++ .||+||+.+....+.. ........++++++++.++|.+..... -++.++.||||||||++|||+|+.+|+
T Consensus 86 q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~ 162 (246)
T PRK14269 86 QQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDK-LKQNALALSGGQQQRLCIARALAIKPK 162 (246)
T ss_pred cCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHH-hcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9998887 6999999886433210 011233445678899999995321111 133456899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+++|||||+|||+.++..+.+.|+++.+ |+|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 163 lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 163 LLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999865 899999999965 57889999999999999999988775
No 137
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.4e-41 Score=350.75 Aligned_cols=213 Identities=30% Similarity=0.450 Sum_probs=177.5
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQD 159 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~ 159 (679)
+++.|+++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|+
T Consensus 7 l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 83 (256)
T TIGR03873 7 VSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTVDLAGVDLHGLSRRARARRVALVEQD 83 (256)
T ss_pred EEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEEcccCCHHHHhhheEEeccc
Confidence 34445556799999999999999999999999999999999999876 37899999976432 335579999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 160 DILYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.+++.+||.||+.+....... ......+..++++++++.+++.+..++. +..||||||||++||++|+.+|++
T Consensus 84 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~l 158 (256)
T TIGR03873 84 SDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRVHVARALAQEPKL 158 (256)
T ss_pred CccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 8878889999999875311000 0011223345688899999998765554 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++|||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|+++..|+.++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999877999999999975 57899999999999999999988765
No 138
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.9e-41 Score=351.89 Aligned_cols=206 Identities=24% Similarity=0.370 Sum_probs=174.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD-- 160 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~-- 160 (679)
++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 35799999999999999999999999999999999999876 47999999976431 1356799999996
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+++.+||+||+.+..... ......+..++++++++.+||. +..+. .++.|||||||||+|||||+.+|++|
T Consensus 100 ~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LSgGe~qrv~laral~~~p~il 172 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK-----LPRQLSGGQLQRINIARALAVKPKLI 172 (265)
T ss_pred hcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4677899999998754311 1123334456788999999996 44444 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|++|++++.|+++++.
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 173 VLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 999999999999999999999999875 899999999965 577899999999999999999988753
No 139
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=349.52 Aligned_cols=210 Identities=25% Similarity=0.361 Sum_probs=173.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~ 161 (679)
++.+|+|+|++|++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|.+.. ...+++++|++|++.
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 3569999999999999999999999999999999999986 22235899999997642 134668999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++ .||+||+.+...... ..+.++..++++++++.+++.+...... ++.+..||||||||++|||||+.+|++|||
T Consensus 105 ~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllL 180 (260)
T PRK10744 105 PFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLLL 180 (260)
T ss_pred cCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 887 899999987643221 1234455567889999999853111111 234568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.+++.+.+.|+++++ +.|||++||++. .+.+++|++++|++|+++..|+++++
T Consensus 181 DEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 181 DEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999964 789999999975 57789999999999999999998775
No 140
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-41 Score=348.46 Aligned_cols=216 Identities=22% Similarity=0.334 Sum_probs=176.8
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEe
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVT 157 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~ 157 (679)
++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+. +.+|+|.++|.+.. ...++.++|++
T Consensus 12 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~ 91 (258)
T PRK14241 12 IYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVF 91 (258)
T ss_pred EEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEc
Confidence 33444679999999999999999999999999999999999986421 25899999997642 13456799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+||+||+.+....+. ..+.++.+++++++++.+||.+..... -+..+++|||||||||+|||||+.+|+
T Consensus 92 q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~ 168 (258)
T PRK14241 92 QRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDR-LDKPGGGLSGGQQQRLCIARAIAVEPD 168 (258)
T ss_pred cccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999987654321 113344556788899999984211111 123456899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe------CCeEEEecChhhHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS------EGRCLYFGKGSEAM 306 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~ 306 (679)
+|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +|++++.|++++..
T Consensus 169 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 169 VLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 9999999999999999999999999964 689999999965 5788999999997 79999999988763
No 141
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-41 Score=359.31 Aligned_cols=205 Identities=29% Similarity=0.436 Sum_probs=177.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~ 161 (679)
..+|+|||++|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+... ..++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP---TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 5699999999999999999999999999999999999876 37999999976422 2456899999997 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+.|.+||.+++....... ....+.+.++++.++++.+||.+ .. ++++++|||||||||+|||||+.+|++||
T Consensus 105 l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~p~~LSgGq~QRv~iArAL~~~P~lLi 177 (327)
T PRK11308 105 LNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHY-----DRYPHMFSGGQRQRIAIARALMLDPDVVV 177 (327)
T ss_pred cCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHh-----cCCCccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 889999999998754432 12345566778899999999963 33 45677899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||+|||..++.+++++|+++.++ |.|||++|||.. .+.++||+|++|++|++++.|+++++.
T Consensus 178 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 178 ADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999874 999999999965 577899999999999999999988874
No 142
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-41 Score=346.72 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=176.2
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCccc------cccCcEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTK------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~~------~~~~~i~y 155 (679)
++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |+.+.+|+|.++|.+... ..++.++|
T Consensus 11 l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 90 (251)
T PRK14244 11 LNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGM 90 (251)
T ss_pred EEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEE
Confidence 3344555679999999999999999999999999999999999875 221358999999976421 24668999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|++.+++. ||.||+.+....+ .......+.++.++++++.+||.+...+.. +..++.||||||||++|||+|+.+
T Consensus 91 v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~ 167 (251)
T PRK14244 91 VFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVK 167 (251)
T ss_pred EecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999988886 9999998764332 111123344456788999999965221111 234668999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 168 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 168 PTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999964 899999999975 57889999999999999999988765
No 143
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=352.35 Aligned_cols=210 Identities=25% Similarity=0.403 Sum_probs=176.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILY 163 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~ 163 (679)
|+++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++.++
T Consensus 17 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 93 (265)
T PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASKEVARRIGLLAQNATTP 93 (265)
T ss_pred ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCcEEEECCEEhhhCCHHHHhhheEEeeccCcCC
Confidence 3446799999999999999999999999999999999999876 37899999976422 3356799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 164 PHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+.+|++||+.+......+. ....+...++++++++.+||.+..++ .++.||||||||++|||||+.+|+++|||
T Consensus 94 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllD 168 (265)
T PRK10253 94 GDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQRQRAWIAMVLAQETAIMLLD 168 (265)
T ss_pred CCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999998753111000 00112334567889999999875554 45579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+|||+.++..+.+.|++++++ |.|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 169 EPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 169 EPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999874 899999999975 588999999999999999999987754
No 144
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=363.76 Aligned_cols=203 Identities=29% Similarity=0.466 Sum_probs=175.4
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~y 155 (679)
++++|+++. + |+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+... ..++.++|
T Consensus 6 l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (352)
T PRK11144 6 FKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGY 80 (352)
T ss_pred EEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEE
Confidence 345565543 3 899999999999999999999999999999998863 7999999875421 23578999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|+..+++.+||+||+.+... ....++++++++.+||.+..++. ++.|||||||||+|||||+.+
T Consensus 81 v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qRvalaraL~~~ 146 (352)
T PRK11144 81 VFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred EcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999987532 12245688999999998765544 557999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|+++++.
T Consensus 147 p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 147 PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999999999999999999999999875 899999999975 688999999999999999999998874
No 145
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-41 Score=347.99 Aligned_cols=217 Identities=24% Similarity=0.355 Sum_probs=176.8
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEE
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTG 154 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~ 154 (679)
+++++|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |....+|+|.++|.+.. ...++.++
T Consensus 17 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 96 (259)
T PRK14274 17 GMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIG 96 (259)
T ss_pred eEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceE
Confidence 33334445679999999999999999999999999999999999986 32124799999997642 13456799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|++|++.+++. ||+||+.+....+ ....+.+..++++++++.+++.+..... -+..+++||||||||++||++|+.
T Consensus 97 ~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~~~~LS~Gq~qrv~laral~~ 172 (259)
T PRK14274 97 MVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDR-LHTQALSLSGGQQQRLCIARALAT 172 (259)
T ss_pred EEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhh-hhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999988885 9999998764322 1112344456678899999986421111 134566899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|+++..|+++++
T Consensus 173 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 173 NPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999965 799999999965 57889999999999999999998875
No 146
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=345.96 Aligned_cols=207 Identities=28% Similarity=0.407 Sum_probs=188.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cc-cCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HI-SKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~-~~~i~yv~Q~ 159 (679)
.+...-++|+|++|+.||++.|||-||||||||+++|.++++| +.|+|+++|.++.. ++ ++++++|||.
T Consensus 38 tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep---t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~ 114 (386)
T COG4175 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP---TRGEILVDGKDIAKLSAAELRELRRKKISMVFQS 114 (386)
T ss_pred hCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC---CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhh
Confidence 3445578999999999999999999999999999999999987 48999999987532 22 4579999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
..|+|+.||.||..|+...+ ..+++++++++.++|+.+||....+ +++++|||||||||.|||||+.+|+||
T Consensus 115 FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~-----~yp~eLSGGMqQRVGLARAla~~~~Il 186 (386)
T COG4175 115 FALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYAD-----KYPNELSGGMQQRVGLARALANDPDIL 186 (386)
T ss_pred hccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhh-----cCcccccchHHHHHHHHHHHccCCCEE
Confidence 99999999999999998764 5688999999999999999998665 567789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||+|+|||--+.++.+.|.+|.++ ++|||++|||.. |.+++.|||.+|++|+++..|+|+|++
T Consensus 187 LMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 187 LMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999999999999765 899999999965 689999999999999999999999975
No 147
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-41 Score=352.00 Aligned_cols=214 Identities=25% Similarity=0.406 Sum_probs=178.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCCC-CCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDDI-LYP 164 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~~-l~~ 164 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.+||++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP---SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 5699999999999999999999999999999999999886 47999999976532 34678999999974 233
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
..||.||+.|..... ..++.+.+++++++++.+||.+..++. ++.||||||||++||++|+.+|+++|||||
T Consensus 100 ~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 171 (280)
T PRK13633 100 ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQKQRVAIAGILAMRPECIIFDEP 171 (280)
T ss_pred cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 469999998864321 234455567789999999998766654 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
|+|||+.++..+.+.|++++++ |.|||++||++.. +.. ||++++|++|++++.|++++... .+...++..|
T Consensus 172 t~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 246 (280)
T PRK13633 172 TAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVMEGTPKEIFKEVEMMKKIGLDVP 246 (280)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEecCHHHHhcChHHHHhcCCCCC
Confidence 9999999999999999999764 9999999999764 554 99999999999999999988753 2334555544
No 148
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.6e-41 Score=343.78 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=173.3
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEec
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQ 158 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q 158 (679)
++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (230)
T TIGR03410 6 LNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIRLDGEDITKLPPHERARAGIAYVPQ 82 (230)
T ss_pred EEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCCHHHHHHhCeEEecc
Confidence 34445556799999999999999999999999999999999999886 47999999876421 12467999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.+++.+|+.||+.+....+. .. ..+..+++++.++ +.+..++ .++.||||||||++||++|+.+|+
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 83 GREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred CCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999987643321 11 1234566777776 4544443 455799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999875 899999999965 57889999999999999999998765
No 149
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-41 Score=349.19 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=178.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++. +++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 4589999999999999999999999999999999999876 47999999976532 34668999999974 6778
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.|+.+|+.+..... ....++..++++++++.+|+.+..++. ++.||||||||++|||||+.+|+++||||||
T Consensus 99 ~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt 170 (269)
T PRK13648 99 SIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQRVAIAGVLALNPSVIILDEAT 170 (269)
T ss_pred ccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998864321 123445556788999999998765543 5579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
+|||+.++..+.+.|++++++ |+|||++||++.. +.. +|++++|++|++++.|++++..+ .+...|.++|
T Consensus 171 ~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 171 SMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNKGTVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEECCEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 999999999999999999765 8999999999764 554 99999999999999999887633 3344454443
No 150
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-41 Score=338.88 Aligned_cols=193 Identities=32% Similarity=0.469 Sum_probs=165.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHHHHH
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETLV 173 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~ 173 (679)
|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP---QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 99999999999999999999999999999999876 47999999976432 23467999999999999999999998
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 005754 174 FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~ 253 (679)
+....+. . ..++.+++++++++.+||.+..++. +..||||||||++||++|+.+|+++||||||+|||+.++
T Consensus 93 ~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~ 164 (211)
T cd03298 93 LGLSPGL--K-LTAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164 (211)
T ss_pred ccccccc--C-ccHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 7543111 1 1223455688999999998765554 457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 254 YRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 254 ~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
..+.+.|+++++ .|.|||++||++. ++.++||++++|++|+++..|
T Consensus 165 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 165 AEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 999999999976 4899999999965 577899999999999998654
No 151
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-40 Score=334.10 Aligned_cols=196 Identities=39% Similarity=0.636 Sum_probs=165.6
Q ss_pred EEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH
Q 005754 45 TLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL 124 (679)
Q Consensus 45 ~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L 124 (679)
+++|+|++|.++.+. +++.+|+|+|+++++||+++|+||||||||||+++|
T Consensus 3 ~~~~~~~~~~~~~~~-----------------------------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l 53 (202)
T cd03233 3 TLSWRNISFTTGKGR-----------------------------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKAL 53 (202)
T ss_pred eEEEEccEEEeccCC-----------------------------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHh
Confidence 589999999886421 246799999999999999999999999999999999
Q ss_pred hcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC
Q 005754 125 AGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201 (679)
Q Consensus 125 ~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 201 (679)
+|+++|....+|+|.++|.+... ..++.++|++|++.+++.+||+||+.+.....
T Consensus 54 ~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------- 111 (202)
T cd03233 54 ANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------- 111 (202)
T ss_pred cccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc----------------------
Confidence 99987422358999999976532 34668999999999999999999998753210
Q ss_pred CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHH
Q 005754 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSR 280 (679)
Q Consensus 202 L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~ 280 (679)
. +..+..||||||||++||+||+.+|+++||||||+|||+.+++.+.+.|++++++ +.|+|+++|+..++
T Consensus 112 ----~-----~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~ 182 (202)
T cd03233 112 ----G-----NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDE 182 (202)
T ss_pred ----c-----ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence 1 2334579999999999999999999999999999999999999999999999875 67777777665556
Q ss_pred HHHhCCeEEEEeCCeEEEec
Q 005754 281 VYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 281 i~~~~D~v~lL~~G~iv~~G 300 (679)
+.+.||++++|++|++++.|
T Consensus 183 ~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 183 IYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhCCeEEEEECCEEEecC
Confidence 88999999999999998765
No 152
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-41 Score=349.15 Aligned_cols=213 Identities=24% Similarity=0.356 Sum_probs=174.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|. ...+|+|.++|.+... ..++.++|++|+
T Consensus 29 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 108 (267)
T PRK14235 29 YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQK 108 (267)
T ss_pred ECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecC
Confidence 33456999999999999999999999999999999999998642 1258999999976421 245679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++. ||.||+.+....+. ...+..+..++++++++.+||.+...... +..++.||||||||++|||+|+.+|++|
T Consensus 109 ~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~ll 185 (267)
T PRK14235 109 PNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVI 185 (267)
T ss_pred CCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 988875 99999988654321 11123344567888999999964211111 2346689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|+++..|+++++
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 186 LMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999976 789999999965 57789999999999999999988765
No 153
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-41 Score=345.96 Aligned_cols=212 Identities=25% Similarity=0.369 Sum_probs=173.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|.+.. ...++.++|++|+
T Consensus 15 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 94 (252)
T PRK14239 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94 (252)
T ss_pred ECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecC
Confidence 334569999999999999999999999999999999999853 42224799999997642 1245679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++ +||+||+.+....+ . ........++++++++.+++.+.... ..++.++.||||||||++||+||+.+|++|
T Consensus 95 ~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14239 95 PNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKD-RLHDSALGLSGGQQQRVCIARVLATSPKII 170 (252)
T ss_pred CccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHH-HHhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 98887 89999998764332 1 11233345667888999987532111 113456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 171 LLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999965 689999999965 58889999999999999999998875
No 154
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=8e-41 Score=342.97 Aligned_cols=210 Identities=30% Similarity=0.477 Sum_probs=179.6
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l 162 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 7 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~ 83 (237)
T TIGR00968 7 SKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQDATRVHARDRKIGFVFQHYAL 83 (237)
T ss_pred EEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCChhhcCEEEEecChhh
Confidence 3445556799999999999999999999999999999999999876 47999999976532 235679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|+.||+.+....+ ........+.++++++.+++.+..++. ++.||||||||++||++|+.+|++++||
T Consensus 84 ~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 84 FKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred ccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998765432 123334456778999999997655544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+.++..
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999876 899999999975 578899999999999999999987753
No 155
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-41 Score=337.62 Aligned_cols=201 Identities=31% Similarity=0.507 Sum_probs=171.9
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEE
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTG 154 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~ 154 (679)
+++++|+++.+ |+|+++++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..++.++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEE
Confidence 45677877766 99999999 999999999999999999999998763 7899999875421 2356799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|++|++.+++.+|++||+.+..... .....+++++++++.+|+.+..++ .++.||||||||++||++|+.
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNR-----YPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhc-----CcccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998764321 233345668889999999865554 345799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
+|++++|||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999875 899999999965 577899999999999998765
No 156
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-41 Score=350.92 Aligned_cols=203 Identities=29% Similarity=0.460 Sum_probs=174.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 5699999999999999999999999999999999999876 47999999976532 34678999999974 6777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+||+||+.+..... ....++..++++++++.+||.+..++. ++.||||||||++|||||+.+|++|+|||||
T Consensus 99 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 99 ATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998764321 123444556789999999998766554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|||+.++..+++.|++++++ ++|||++||++.. + ..||++++|++|+++..|++++..
T Consensus 171 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 171 SMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999876 5999999999764 5 479999999999999999887754
No 157
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-40 Score=340.68 Aligned_cols=209 Identities=29% Similarity=0.440 Sum_probs=179.4
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l 162 (679)
+++++.+.+|+|+|+++++||+++|+||||||||||+++|+|.++| ..|+|.++|.+... ..++.++|++|++.+
T Consensus 7 ~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~ 83 (232)
T cd03300 7 SKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP---TSGEILLDGKDITNLPPHKRPVNTVFQNYAL 83 (232)
T ss_pred EEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCChhhcceEEEeccccc
Confidence 3444556799999999999999999999999999999999999986 37899999976532 235689999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|+.||+.+....+ ..+.....+.++++++.+|+.+..++. +..||||||||++|||+|+.+|+++|||
T Consensus 84 ~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 84 FPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred CCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998765432 123344556788899999998766654 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+|||+.++..+.+.|++++++ |+|||+++|++. ++.++||++++|++|++++.|+.++.
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999875 899999999965 57889999999999999999987665
No 158
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.1e-40 Score=341.78 Aligned_cols=203 Identities=31% Similarity=0.472 Sum_probs=173.9
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEe-cCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVT-QDDI 161 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~-Q~~~ 161 (679)
++|+.+++|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+.. ...++.++|++ |++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP---TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 556778899999999999999999999999999999999999886 4799999987532 23456899998 5567
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++.+||+||+.+....+ ....++..++++++++.+||.+..++.+ +.||||||||++||++|+.+|+++||
T Consensus 106 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llll 177 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFL 177 (236)
T ss_pred cCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888999999998865432 1234445567788999999987776654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 178 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999765 899999999975 578899999999999998765
No 159
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-41 Score=324.97 Aligned_cols=206 Identities=29% Similarity=0.487 Sum_probs=177.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
+|++|++||++++|||+++|+||||||||||||.|+|...|+ +|++.+||.+... ++.+.-+.+||+..+-..
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 577999999999999999999999999999999999988764 7899999987643 456678999999877555
Q ss_pred CCHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh------CCC
Q 005754 166 LTVRETLVFCSLLRLPRTL--STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI------NPS 237 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~------~P~ 237 (679)
.||+|.+.++.. |... ...+..+.+++.|...++.+.+.+ ....|||||||||.+||.|+. +++
T Consensus 90 Ftv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----~y~~LSGGEqQRVqlARvLaQl~~~v~~~r 161 (259)
T COG4559 90 FTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGR-----DYRTLSGGEQQRVQLARVLAQLWPPVPSGR 161 (259)
T ss_pred eEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhcc-----chhhcCchHHHHHHHHHHHHHccCCCCCCc
Confidence 799999998754 3322 223556678999999999886654 445799999999999999975 445
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||||+||...+..++++.++++++|..|+++.||.+- ...+||||++|++||++..|+|++++.
T Consensus 162 ~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 162 WLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 899999999999999999999999999999999999999875 778999999999999999999998753
No 160
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-41 Score=381.01 Aligned_cols=212 Identities=23% Similarity=0.328 Sum_probs=179.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDDI 161 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~~ 161 (679)
+|+++.+|+|+||++++||+++|+||||||||||||+|+|+.+|+ ..+|+|.++|.+... ..++.++||+|++.
T Consensus 14 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 92 (506)
T PRK13549 14 TFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELA 92 (506)
T ss_pred EeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccc
Confidence 344567999999999999999999999999999999999998751 258999999976532 12467999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++.+||+||+.+....+.....+.++..++++++++.+|+.+..++.+ ++|||||||||+||+||+.+|++|||
T Consensus 93 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllL 167 (506)
T PRK13549 93 LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVEIAKALNKQARLLIL 167 (506)
T ss_pred cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999988643221111233445567889999999987666544 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 168 DEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999888999999999965 57889999999999999999987764
No 161
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-41 Score=341.94 Aligned_cols=199 Identities=28% Similarity=0.446 Sum_probs=170.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHHHHH
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETLV 173 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~ 173 (679)
|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.+|+.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 89999999999999999999999999999999876 47999999976432 22467999999999999999999998
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 005754 174 FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~ 253 (679)
+...... .. .+...++++++++.+||++..++. ++.||||||||++||++|+.+|+++||||||+|||+.++
T Consensus 94 ~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 94 LGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (232)
T ss_pred ccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 7532110 11 223456688999999998766654 457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 254 YRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 254 ~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+.+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|++++..
T Consensus 166 ~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 166 QEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999764 899999999975 578899999999999999999887653
No 162
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=340.08 Aligned_cols=210 Identities=30% Similarity=0.494 Sum_probs=178.9
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~ 160 (679)
+++++|+++ +|+|+|++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++
T Consensus 5 ~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v~i~g~~~~~~~~~~~~i~~~~q~~ 80 (235)
T cd03299 5 NLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP---DSGKILLNGKDITNLPPEKRDISYVPQNY 80 (235)
T ss_pred eEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcCcCChhHcCEEEEeecC
Confidence 344455444 89999999999999999999999999999999999886 47999999976532 2356899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..++. ++.||||||||++||+||+.+|++++
T Consensus 81 ~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lll 152 (235)
T cd03299 81 ALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIARALVVNPKILL 152 (235)
T ss_pred ccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999998764322 123444556678899999998766654 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 153 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999765 999999999975 57889999999999999999987765
No 163
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-41 Score=352.43 Aligned_cols=202 Identities=25% Similarity=0.397 Sum_probs=170.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---------ccccCcEEEEecCCC-
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---------KHISKRTGFVTQDDI- 161 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---------~~~~~~i~yv~Q~~~- 161 (679)
.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+.. ...++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS---ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 599999999999999999999999999999999999876 4789999986532 134567999999973
Q ss_pred -CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 162 -LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 162 -l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+++ .||+||+.+..... ....++..++++++++.++|. +..++ .++.||||||||++|||||+.+|++|
T Consensus 102 ~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lL 172 (289)
T PRK13645 102 QLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFELSGGQKRRVALAGIIAMDGNTL 172 (289)
T ss_pred hhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 444 69999998864321 123444556788899999994 44444 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++..
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999764 899999999975 578999999999999999999987764
No 164
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=346.72 Aligned_cols=214 Identities=24% Similarity=0.333 Sum_probs=176.8
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEe
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVT 157 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~ 157 (679)
++|+++++|+|+|+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|.+... ..++.++|++
T Consensus 28 ~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 107 (267)
T PRK14237 28 VYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVF 107 (267)
T ss_pred EEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEe
Confidence 3344567999999999999999999999999999999999998642 1358999999976531 2366799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++ .||+||+.+..... ....+.+..++++++++.++|.+..+... ++.++.||||||||++|||+|+.+|+
T Consensus 108 q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~ 183 (267)
T PRK14237 108 QRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPD 183 (267)
T ss_pred cCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9998887 59999998864321 11234445567888999999864322222 34567899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 184 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 184 ILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999964 799999999975 57899999999999999999998875
No 165
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=344.22 Aligned_cols=213 Identities=24% Similarity=0.349 Sum_probs=174.9
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. ...+|+|.++|.+... ..++.++|++|
T Consensus 13 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q 92 (251)
T PRK14270 13 WYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQ 92 (251)
T ss_pred EECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEec
Confidence 344467999999999999999999999999999999999987641 1257999999976531 23567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++ +|++||+.+...... .....+..++++++++.+++.+.... .-+..++.||||||||++||++|+.+|++
T Consensus 93 ~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~l 168 (251)
T PRK14270 93 KPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKD-DLKKSALKLSGGQQQRLCIARTIAVKPDV 168 (251)
T ss_pred CCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhh-HhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 998887 899999988653321 11233445667889999988531111 11345668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 169 lllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 169 ILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999976 689999999975 57889999999999999999998876
No 166
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.2e-40 Score=347.74 Aligned_cols=204 Identities=23% Similarity=0.393 Sum_probs=173.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC--CCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI--LYP 164 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~--l~~ 164 (679)
+++|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 5699999999999999999999999999999999999986 47999999976532 22457999999974 678
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
.+||.|++.+....+. .....+..+.++++++.+||. +..+. .+..|||||||||+||++|+.+|++|||||
T Consensus 103 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDE 175 (267)
T PRK15112 103 RQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQKQRLGLARALILRPKVIIADE 175 (267)
T ss_pred chhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 8899999987654321 123444556788999999994 44443 345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||+|||+.++..+.+.|++++++ |.|||++||++. ++..+||++++|++|++++.|++++.
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999875 899999999975 57889999999999999999987765
No 167
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.4e-40 Score=338.86 Aligned_cols=194 Identities=33% Similarity=0.476 Sum_probs=166.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c---c-cCcEEEEecCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H---I-SKRTGFVTQDDILY 163 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~---~-~~~i~yv~Q~~~l~ 163 (679)
.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... . . ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG---SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 599999999999999999999999999999999999876 47999999976432 1 1 25799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||.||+.+....+ .....+..++++++++.++|.+..++. +..||||||||++||++|+.+|++|||||
T Consensus 101 ~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge~qrl~la~al~~~p~llllDE 172 (228)
T PRK10584 101 PTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGGEQQRVALARAFNGRPDVLFADE 172 (228)
T ss_pred CCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999998764332 123344566788999999998765544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
||+|||+.+++.+.+.|++++++ |.|||++||++. .+ +.+|++++|++|++++
T Consensus 173 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 173 PTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999764 899999999975 45 5699999999999875
No 168
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-41 Score=343.80 Aligned_cols=199 Identities=29% Similarity=0.453 Sum_probs=170.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~ 165 (679)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. ...++.++|++|++.+++
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~- 90 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP---TEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE- 90 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-
Confidence 45699999999999999999999999999999999999876 4799999997642 234567999999998887
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.||+||+.+....+ . ...++++++++.+||. +..+ +.+..||||||||++||+||+.+|++||||||
T Consensus 91 ~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 91 GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYAT-----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 69999998643221 1 1234577899999996 3444 34567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|+++..|++.++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999874 999999999965 57889999999999999999988775
No 169
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=343.47 Aligned_cols=215 Identities=24% Similarity=0.363 Sum_probs=174.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC--eeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~--~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+.. .+|+|.++|.+... ..++.++|++|
T Consensus 13 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 92 (252)
T PRK14272 13 YYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQ 92 (252)
T ss_pred EECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEec
Confidence 34446799999999999999999999999999999999999875321 47999999976421 33567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++.+|+.||+.+..... ....+++..+.++++++.+++.+.... ..+..++.||||||||++||++|+.+|++
T Consensus 93 ~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~l 169 (252)
T PRK14272 93 KPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKD-RLKTPATGLSGGQQQRLCIARALAVEPEI 169 (252)
T ss_pred cCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999998754321 111233445567777787776421111 11344567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 170 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 170 LLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999965 799999999975 578899999999999999999987763
No 170
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=343.09 Aligned_cols=214 Identities=25% Similarity=0.378 Sum_probs=175.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++.+|+|+||++++||+++|+|||||||||||++|+|+.++. ...+|+|.++|.+... ..++.++|++|
T Consensus 12 ~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14262 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQ 91 (250)
T ss_pred EeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEec
Confidence 334467999999999999999999999999999999999998631 1258999999976431 24567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++ .||+||+.+...... .......++.+++.++.+|+.+..+. ..++.+++||||||||++||+||+.+|++
T Consensus 92 ~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr~~la~al~~~p~l 167 (250)
T PRK14262 92 KPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKS-ELNKPGTRLSGGQQQRLCIARALAVEPEV 167 (250)
T ss_pred CCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHH-HHhCChhhcCHHHHHHHHHHHHHhCCCCE
Confidence 998887 899999987643221 11233445567888999998642111 12345678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|+++..|+++++.
T Consensus 168 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 168 ILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999975 789999999975 478899999999999999999987764
No 171
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-40 Score=348.83 Aligned_cols=215 Identities=27% Similarity=0.399 Sum_probs=176.1
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC-----eeeEEEECCCCccc----cccCcEEE
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG-----LTGTILTNNNKPTK----HISKRTGF 155 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~-----~~G~i~~~g~~~~~----~~~~~i~y 155 (679)
+++|+++.+|+|+|++|++||+++|+||||||||||||+|+|+++|+.+ .+|+|.++|.+... ..++.++|
T Consensus 8 ~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 87 (272)
T PRK13547 8 HVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAV 87 (272)
T ss_pred EEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEE
Confidence 3344456799999999999999999999999999999999999876411 27999999976432 33556899
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML- 233 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~- 233 (679)
++|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++ .+..|||||||||+||++|+
T Consensus 88 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~ 162 (272)
T PRK13547 88 LPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLSGGELARVQFARVLAQ 162 (272)
T ss_pred ecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhc
Confidence 99998766679999999875321100 011112344568889999999875554 45579999999999999999
Q ss_pred --------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 234 --------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 234 --------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++
T Consensus 163 ~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (272)
T PRK13547 163 LWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPAD 241 (272)
T ss_pred cccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 599999999999999999999999999999876 899999999975 5778999999999999999998876
Q ss_pred H
Q 005754 305 A 305 (679)
Q Consensus 305 ~ 305 (679)
+
T Consensus 242 ~ 242 (272)
T PRK13547 242 V 242 (272)
T ss_pred H
Confidence 5
No 172
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=341.86 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=174.1
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCC--CCCeeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ--GHGLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~--~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++++|+|+|++|++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+... ..++.++|++|
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14240 12 FYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQ 91 (250)
T ss_pred EECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEec
Confidence 34445799999999999999999999999999999999998753 11258999999976531 34567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++ +|+.||+.+....+. ..+.++.+++++++++.+++.+..... -++.+..||||||||++|||+|+.+|++
T Consensus 92 ~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~l 167 (250)
T PRK14240 92 QPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDR-LKKSALGLSGGQQQRLCIARALAVEPEV 167 (250)
T ss_pred CCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHH-HhcCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 998887 899999998643321 112344556788889998875321111 1234668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|+++..|++++.
T Consensus 168 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 168 LLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999964 799999999964 58889999999999999999988775
No 173
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.4e-40 Score=339.74 Aligned_cols=200 Identities=31% Similarity=0.481 Sum_probs=169.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHH
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLV 173 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 173 (679)
|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+... .....+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~-~~~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQITE-PGPDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCC-CChhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999999876 47999999976532 1223589999999999999999998
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 005754 174 FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~ 253 (679)
+......+ ...+.+..++++++++.+||.+..++. +++||||||||++||++|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 233445556788999999998765554 457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 254 YRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 254 ~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|+..+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 9999999999765 899999999975 5788999999999999998886544
No 174
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.2e-40 Score=334.22 Aligned_cols=197 Identities=27% Similarity=0.444 Sum_probs=168.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+++++||+++|+||||||||||+|+|+|..+|+ +|+|.++|.+... ..++.++|++|++.+++.+|+.|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999998863 7999999976432 34567999999999999999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+...... . ...+.+++++++++.+||.+..++. ++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 90 n~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 161 (213)
T TIGR01277 90 NIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP 161 (213)
T ss_pred HHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 9987532211 1 1222345678899999998765544 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 251 TAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
.++..+.+.|+++.++ |.|||++||++. ++.+++|++++|++|+++..|.
T Consensus 162 ~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 162 LLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999764 899999999965 5778999999999999998875
No 175
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=341.33 Aligned_cols=216 Identities=22% Similarity=0.321 Sum_probs=175.9
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc-----ccccCcEEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT-----KHISKRTGFV 156 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~-----~~~~~~i~yv 156 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.+.. ...++.++|+
T Consensus 9 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~ 88 (249)
T PRK14253 9 LDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMV 88 (249)
T ss_pred cEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEE
Confidence 3444555679999999999999999999999999999999999987531 25799999997542 1345679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|++.+++ .||.||+.+..... ....+...++++++.++.+++.+..... -+..+.+|||||||||+|||+|+.+|
T Consensus 89 ~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p 164 (249)
T PRK14253 89 FQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDR-LKSHAFGLSGGQQQRLCIARTIAMEP 164 (249)
T ss_pred ecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHH-hhcCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999887 89999998764321 1112334456677888888875422111 13446689999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+++||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 165 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 165 DVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999976 589999999975 58889999999999999999987764
No 176
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=377.56 Aligned_cols=212 Identities=26% Similarity=0.404 Sum_probs=179.4
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQD 159 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~ 159 (679)
+++|+++++|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+... ..++.++|++|+
T Consensus 11 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 87 (501)
T PRK10762 11 DKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQE 87 (501)
T ss_pred EEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcc
Confidence 33444567999999999999999999999999999999999998864 7999999976421 124579999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 160 DILYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.+++.+||+||+.++...+.. ...+..+.+++++++++.+||.+..+..+ +.|||||||||+||+||+.+|++
T Consensus 88 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~l 162 (501)
T PRK10762 88 LNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMVEIAKVLSFESKV 162 (501)
T ss_pred hhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999886432110 11233445567889999999988666544 46999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 163 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 163 IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999888999999999975 58899999999999999999987654
No 177
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=345.33 Aligned_cols=215 Identities=20% Similarity=0.323 Sum_probs=172.9
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCccc------cccCcEEEE
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTK------HISKRTGFV 156 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~~------~~~~~i~yv 156 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +....+|+|.++|.+... ..++.++|+
T Consensus 28 ~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 107 (268)
T PRK14248 28 SIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMV 107 (268)
T ss_pred EEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEE
Confidence 333445679999999999999999999999999999999999754 212358999999976431 245679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|++.+++. |+.||+.+..... ........++.+++.++.+++.+.... ..++.++.||||||||++|||+|+.+|
T Consensus 108 ~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qrl~laral~~~p 183 (268)
T PRK14248 108 FQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKD-RLHSSALSLSGGQQQRLCIARTLAMKP 183 (268)
T ss_pred ecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHH-HHhcCcccCCHHHHHHHHHHHHHhCCC
Confidence 999988885 9999998764321 111222334567788888888531111 113456689999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++|||||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 184 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 184 AVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999965 689999999965 57889999999999999999988765
No 178
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.2e-40 Score=332.03 Aligned_cols=196 Identities=31% Similarity=0.469 Sum_probs=167.2
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---c-----cccCcEE
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---K-----HISKRTG 154 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~-----~~~~~i~ 154 (679)
++++.|+++++|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+.. . ..++.++
T Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 3 NISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred ceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccchhhHHHHHHhCee
Confidence 445666667899999999999999999999999999999999999876 4799999997632 1 2356899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|++|++.+++.+|++||+.+..... ...+.+..++++++++.+||++..++. ++.||||||||++||+||+.
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILK 151 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999865422 123445566788999999998766554 45799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ..+.||++++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999877999999999975 34789999875
No 179
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=341.12 Aligned_cols=213 Identities=25% Similarity=0.356 Sum_probs=174.1
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++.+|+|+|++|++||+++|+||||||||||+++|+|+.+|+. ..+|+|.++|.+... ..++.++|++|
T Consensus 13 ~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q 92 (251)
T PRK14249 13 FYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQ 92 (251)
T ss_pred EECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEec
Confidence 3444679999999999999999999999999999999999988642 136999999876421 34678999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++. |++||+.+....+. ...+++..+.++++++.+++.+.... ..++.+..||||||||++|||+|+.+|++
T Consensus 93 ~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~Gq~qrv~laral~~~p~l 168 (251)
T PRK14249 93 QPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKD-NLHKSGLALSGGQQQRLCIARVLAIEPEV 168 (251)
T ss_pred CCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhh-HhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9998875 99999988654321 11122334567778888887532111 12345678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+||||||+|||+.++..+.+.|+++. +++|||++||++. .+.++||++++|++|++++.|++++.
T Consensus 169 llLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 169 ILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 99999999999999999999999995 5899999999965 57889999999999999999988775
No 180
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=377.59 Aligned_cols=214 Identities=27% Similarity=0.379 Sum_probs=179.8
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~ 157 (679)
+++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|.+... ..++.++||+
T Consensus 10 ~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~i~~v~ 86 (510)
T PRK09700 10 GIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP---TKGTITINNINYNKLDHKLAAQLGIGIIY 86 (510)
T ss_pred eeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC---CccEEEECCEECCCCCHHHHHHCCeEEEe
Confidence 333445556799999999999999999999999999999999999876 37999999976432 1235799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhc--C-C-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 158 QDDILYPHLTVRETLVFCSLLR--L-P-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~--~-~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
|++.+++.+||+||+.+..... . . ...+..+..++++++++.+||.+..++.+ ++|||||||||+||++|+
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 87 QELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHKQMLEIAKTLM 161 (510)
T ss_pred ecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHh
Confidence 9999999999999998753211 0 0 00123445567889999999987666554 479999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999999888999999999965 57889999999999999999988764
No 181
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.9e-40 Score=341.33 Aligned_cols=207 Identities=26% Similarity=0.371 Sum_probs=171.8
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCC-----ccc----c----ccCcEE
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK-----PTK----H----ISKRTG 154 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~-----~~~----~----~~~~i~ 154 (679)
|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+ ... . .++.++
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~ 92 (258)
T PRK11701 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP---DAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWG 92 (258)
T ss_pred cCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCccccccccccCCHHHHHHHhhcceE
Confidence 3345699999999999999999999999999999999999886 47899999976 321 1 245699
Q ss_pred EEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHH
Q 005754 155 FVTQDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 155 yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
|++|++ .+++.+|+.||+.+..... . .....+.++++.++++.+++.+ ..++ .+..||||||||++||||
T Consensus 93 ~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 93 FVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDD-----LPTTFSGGMQQRLQIARN 165 (258)
T ss_pred EEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhC-----CCccCCHHHHHHHHHHHH
Confidence 999997 4677889999997643211 1 1122344566788999999963 3443 456799999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+++|++++|++|++++.|+++++
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999765 899999999965 57789999999999999999988765
No 182
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=343.30 Aligned_cols=212 Identities=24% Similarity=0.367 Sum_probs=174.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC--eeeEEEECCCCcc------ccccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILTNNNKPT------KHISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~--~~G~i~~~g~~~~------~~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+++.. .+|+|.++|.+.. ...++.++|++|+
T Consensus 17 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 96 (259)
T PRK14260 17 YNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQR 96 (259)
T ss_pred ECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecc
Confidence 3345699999999999999999999999999999999999875322 4899999997642 1345679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++ +||+||+.+....+. ..++.+..++++++++.+|+.+.... ..+..+..||||||||++|||||+.+|+++
T Consensus 97 ~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll 172 (259)
T PRK14260 97 PNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKD-KLNKSALGLSGGQQQRLCIARALAIKPKVL 172 (259)
T ss_pred cccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 98887 899999987644321 12334445667888999988431111 123456789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe-----CCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS-----EGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~-----~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +|++++.|++++.
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 173 LMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 99999999999999999999999975 699999999975 5889999999998 5999999999886
No 183
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-40 Score=340.53 Aligned_cols=210 Identities=24% Similarity=0.352 Sum_probs=171.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~ 161 (679)
.+++|+|+|++|++||+++|+||||||||||+|+|+|+++ |....+|+|.++|.+.. ...++.++|++|++.
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 4569999999999999999999999999999999999986 21125899999997642 124567999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++ .||+||+.+..... .....+...+.++++++.+++...... ..+..+.+||||||||++|||||+.+|+++||
T Consensus 96 ~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr~~laral~~~p~llll 171 (251)
T PRK14251 96 PFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETKD-NLDRNAQAFSGGQQQRICIARALAVRPKVVLL 171 (251)
T ss_pred cCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchHH-HhccChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 886 79999998754322 111223344567888999998531100 11344668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+++..|++++.
T Consensus 172 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 172 DEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999964 699999999975 57889999999999999999988775
No 184
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-40 Score=345.05 Aligned_cols=213 Identities=22% Similarity=0.360 Sum_probs=172.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~Q 158 (679)
+|+++.+|+|+||+|++||+++|+|||||||||||++|+|++++.. ..+|+|.++|.+.. ...++.++|++|
T Consensus 22 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q 101 (269)
T PRK14259 22 SYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQ 101 (269)
T ss_pred EECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEcc
Confidence 3444679999999999999999999999999999999999876311 25899999997542 134567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++. ||+||+.+....+ .... +.+++++++++.+++...... .-+..++.||||||||++|||||+.+|++
T Consensus 102 ~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~l 175 (269)
T PRK14259 102 QPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKD-KLNESGYSLSGGQQQRLCIARTIAIEPEV 175 (269)
T ss_pred CCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhh-hhCCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9988884 9999998865432 1122 234567778888887431111 12345668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC-----------CeEEEecChhhHHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE-----------GRCLYFGKGSEAMS 307 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~-----------G~iv~~G~~~~~~~ 307 (679)
|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++ |++++.|+++++.+
T Consensus 176 llLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 176 ILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 999999999999999999999999964 799999999965 58899999999996 67899999988743
No 185
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.7e-40 Score=335.75 Aligned_cols=208 Identities=27% Similarity=0.375 Sum_probs=171.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCCCccc-cc-cCcEEEEecCCC--CCCCCC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-HGLTGTILTNNNKPTK-HI-SKRTGFVTQDDI--LYPHLT 167 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-~~~~G~i~~~g~~~~~-~~-~~~i~yv~Q~~~--l~~~lT 167 (679)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+|. ...+|+|.++|.+... .. ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999998751 0147999999976533 22 357999999984 567789
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
++|++.+...... ....+..++++++++.+++.+.. ...+..++.|||||||||+|||+|+.+|++|||||||+|
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~ 155 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPE--EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTD 155 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchH--HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999977543211 12234456788999999997320 012334567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 248 LDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+.++..+.+.|++++++ |+|||++||++. ++..++|++++|++|+++..|++++..
T Consensus 156 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 156 LDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999874 899999999975 578899999999999999999887753
No 186
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-40 Score=345.09 Aligned_cols=214 Identities=22% Similarity=0.386 Sum_probs=178.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE---FEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 3589999999999999999999999999999999999986 47999999976532 34678999999974 5777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.||.||+.+..... ....++..++++++++.+||.+..++. +..||||||||++|||+|+.+|++|||||||
T Consensus 97 ~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~lAraL~~~p~llllDEPt 168 (277)
T PRK13642 97 ATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVAVAGIIALRPEIIILDEST 168 (277)
T ss_pred CCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998754321 123445556788999999998765543 5579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
+|||+.++..+.+.|++++++ |.|||++||++.. +. .+|++++|++|+++..|++++... .+...+...|
T Consensus 169 ~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (277)
T PRK13642 169 SMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVP 242 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCHHHHhcCHHHHHHCCCCCC
Confidence 999999999999999999875 9999999999764 54 699999999999999999887643 2334455444
No 187
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-40 Score=339.40 Aligned_cols=215 Identities=24% Similarity=0.336 Sum_probs=172.8
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEEEE
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTGFV 156 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~yv 156 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|.+.. ...++.++|+
T Consensus 12 ~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 91 (252)
T PRK14255 12 HLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMV 91 (252)
T ss_pred EEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEE
Confidence 333445679999999999999999999999999999999999864 32224899999997642 1345689999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|++.+++ .||.||+.+....+. ........+.+.+.++.+++...... .-+..++.||||||||++|||+|+.+|
T Consensus 92 ~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~-~~~~~~~~LS~Gq~qrv~laral~~~p 167 (252)
T PRK14255 92 FQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKD-HLHESALSLSGGQQQRVCIARVLAVKP 167 (252)
T ss_pred ECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhh-HHhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 99998888 699999987643321 11222234456777888877421111 113456689999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+++||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+++..|++.+.
T Consensus 168 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 168 DVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999976 589999999975 57889999999999999999988775
No 188
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-40 Score=339.67 Aligned_cols=212 Identities=24% Similarity=0.359 Sum_probs=173.2
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+..+. ...+|+|.++|.+... ..++.++|++|+
T Consensus 16 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 95 (253)
T PRK14261 16 YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQR 95 (253)
T ss_pred ECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecC
Confidence 33467999999999999999999999999999999999987531 1247999999976421 335679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++. ||+||+.+....+. .....+.++.++++++.+++.+...+. .+..++.||||||||++|||+|+.+|+++
T Consensus 96 ~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14261 96 PNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSLSGGQQQRLCIARTLAVNPEVI 171 (253)
T ss_pred CccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 988885 99999998654321 112334456678888988885321111 13456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.+++.+.+.|+++++ ++|||++||++. ++.+++|++++|++|+++..|++++.
T Consensus 172 lLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 172 LMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 99999999999999999999999976 689999999965 57789999999999999999998775
No 189
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-41 Score=374.03 Aligned_cols=218 Identities=30% Similarity=0.539 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH
Q 005754 45 TLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL 124 (679)
Q Consensus 45 ~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L 124 (679)
.++|+|++|+.+.+. +.+||+|+||+|+|||.+||+||||+||||+.++|
T Consensus 465 ~IeF~~VsFaYP~Rp------------------------------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL 514 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP------------------------------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLL 514 (716)
T ss_pred eEEEEEeeeecCCCC------------------------------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHH
Confidence 499999999987542 36799999999999999999999999999999999
Q ss_pred hcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHH-----HH
Q 005754 125 AGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA-----EA 195 (679)
Q Consensus 125 ~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~ 195 (679)
-.++.|+ +|+|.+||.++.+ .+|++||+|.|+|.||.. ||+|||.|+.. ..+.++.++.+ .+
T Consensus 515 ~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~ 585 (716)
T KOG0058|consen 515 LRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHE 585 (716)
T ss_pred HHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHH
Confidence 9999874 7999999998643 568899999999999986 99999999754 23444443322 22
Q ss_pred HHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 005754 196 VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275 (679)
Q Consensus 196 ~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH 275 (679)
.+ .++++..||.+|+ +...||||||||++|||||++||+||||||.||+||.++...+.+.|.++.+ ++|||++.|
T Consensus 586 FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAH 661 (716)
T KOG0058|consen 586 FI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAH 661 (716)
T ss_pred HH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEeh
Confidence 23 3678889999996 4567999999999999999999999999999999999999999999999876 599999999
Q ss_pred CccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 276 QPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 276 ~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
..+ ..+.+|+|+++++|++++.|+.+|.++
T Consensus 662 RLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 662 RLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred hhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 976 467899999999999999999888754
No 190
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=341.35 Aligned_cols=212 Identities=24% Similarity=0.368 Sum_probs=175.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~ 161 (679)
++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ ...|+|.++|++.. ...++.++|++|++.
T Consensus 19 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 3569999999999999999999999999999999999988641 14789999997642 134567999999988
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++ +|+.||+.+..... ...+..+..+++.++++.+++.+..+. ..++.+..||||||||++|||+|+.+|+++||
T Consensus 99 l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qrv~laral~~~p~vllL 174 (261)
T PRK14258 99 LFP-MSVYDNVAYGVKIV--GWRPKLEIDDIVESALKDADLWDEIKH-KIHKSALDLSGGQQQRLCIARALAVKPKVLLM 174 (261)
T ss_pred cCc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888 89999998764321 111233445678889999998542211 12345668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC-----CeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE-----GRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~-----G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.++||++++|++ |++++.|+++++.
T Consensus 175 DEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 175 DEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 999999999999999999999975 5899999999975 58899999999999 9999999998863
No 191
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-40 Score=343.39 Aligned_cols=213 Identities=23% Similarity=0.398 Sum_probs=176.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc-----cccCcEEEEecCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK-----HISKRTGFVTQDD 160 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~ 160 (679)
|+++.+|+|+|++|++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.+... ..++.++|++|++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 110 (276)
T PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110 (276)
T ss_pred ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCC
Confidence 334679999999999999999999999999999999999987521 258999999976421 3467899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++ .|++||+.+..... ...+..+.++++.++++.+++.+..++.. ++.++.||||||||++|||+|+.+|+++|
T Consensus 111 ~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lll 186 (276)
T PRK14271 111 NPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLL 186 (276)
T ss_pred ccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 79999998764321 11234445556788899999975332222 24466899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.+++.+.+.|+++++ ++|||++||++. ++.+++|++++|++|+++..|+++++.
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 187 LDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999976 589999999965 578899999999999999999988763
No 192
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-40 Score=343.07 Aligned_cols=210 Identities=24% Similarity=0.356 Sum_probs=173.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc------cccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK------HISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~------~~~~~i~yv~Q~~~ 161 (679)
++.+|+|+||++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+... ..++.++|++|++.
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 3569999999999999999999999999999999999976311 258999999976431 34678999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++. |++||+.+..... ....+...++.++++++.+++.+...+. .+..+..||||||||++|||+|+.+|+++||
T Consensus 117 l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lllL 192 (272)
T PRK14236 117 PFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDR-LHENAFGLSGGQQQRLVIARAIAIEPEVLLL 192 (272)
T ss_pred cCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHH-hhCCcccCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 8886 9999998764322 1112333445678889999886421111 1344668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|+++..|++++.
T Consensus 193 DEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 193 DEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999976 789999999965 57889999999999999999988765
No 193
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-41 Score=315.88 Aligned_cols=216 Identities=26% Similarity=0.439 Sum_probs=190.1
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------------
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------------ 146 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------------ 146 (679)
...+++.|+||...+|++||+..++|+++.|+|.|||||||+|+||.-+.+|. .|.|.+||+.+.
T Consensus 7 l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred eehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeC
Confidence 34567789999999999999999999999999999999999999999988863 788888886421
Q ss_pred -----ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHH
Q 005754 147 -----KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGG 221 (679)
Q Consensus 147 -----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 221 (679)
+.+|.+.|+|||...+++.+||.||+.-+-.-- ...++.+..++++..|+++|+.+.+| .++..||||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~-----~YP~~LSGG 156 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKAD-----AYPAHLSGG 156 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhh-----cCccccCch
Confidence 123457999999999999999999986532211 13567888899999999999998765 456789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 222 ERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 222 erqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||... ...+...+|++|.+|.+-+.|+
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh~G~iEE~G~ 235 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLHQGKIEEEGP 235 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEeecceecccCC
Confidence 999999999999999999999999999999999999999999999999999999965 5788999999999999999999
Q ss_pred hhhH
Q 005754 302 GSEA 305 (679)
Q Consensus 302 ~~~~ 305 (679)
|+++
T Consensus 236 P~qv 239 (256)
T COG4598 236 PEQV 239 (256)
T ss_pred hHHH
Confidence 9987
No 194
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-40 Score=345.38 Aligned_cols=219 Identities=22% Similarity=0.324 Sum_probs=175.6
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCccc------cccCc
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTK------HISKR 152 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~~------~~~~~ 152 (679)
.++++++|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |....+|+|.++|.+... ..++.
T Consensus 42 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~ 121 (286)
T PRK14275 42 AKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK 121 (286)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhc
Confidence 3444445555679999999999999999999999999999999999854 211258999999976421 24568
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+|+.+.... ..+..++.||||||||++|||||
T Consensus 122 i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 122 IGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSD-RLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred EEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhh-HhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999988875 99999998653321 11223345667788888887421100 11344668999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999975 689999999975 57889999999999999999998775
No 195
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=359.16 Aligned_cols=212 Identities=31% Similarity=0.434 Sum_probs=185.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCCCccc--------cccCcEEEEecCC-
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-HGLTGTILTNNNKPTK--------HISKRTGFVTQDD- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~- 160 (679)
..+++||||++++||++||+|.|||||||+.++|.|+++++ ...+|+|.++|.+... ...+.|+||||++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999865 2368999999985421 1236799999996
Q ss_pred -CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 -ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 -~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+-|-+||.+.+.-....+. ..+.++.++++.++|+.+||.+.... ++++++|||||||||.||+||+.+|++|
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LL 176 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLL 176 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEE
Confidence 46777899998876555442 23477888999999999999986554 6799999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
|+||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+.++||||++|.+|++++.|+++++++-
T Consensus 177 IaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~ 245 (539)
T COG1123 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIVETGPTEEILSN 245 (539)
T ss_pred EECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHHHHhc
Confidence 99999999999999999999999985 5999999999976 58999999999999999999999998764
No 196
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=338.45 Aligned_cols=223 Identities=28% Similarity=0.404 Sum_probs=181.9
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC---eeeEEEECCCCcc----ccccC
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPT----KHISK 151 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~---~~G~i~~~g~~~~----~~~~~ 151 (679)
...+++++.++++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+.| ..|++.++|.+.. ...++
T Consensus 11 i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~ 90 (257)
T PRK14246 11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK 90 (257)
T ss_pred eeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhc
Confidence 3445556667778899999999999999999999999999999999999887543 3477777666532 13467
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
.++|++|++.+++.+||+||+.+..... ....+.+..++++++++.+++.+..... -+..++.||||||||++|||+
T Consensus 91 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 91 EVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDR-LNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred ceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhh-hcCCcccCCHHHHHHHHHHHH
Confidence 8999999999999999999998864321 1122345556788999999996421111 123466899999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||++++|++|+++..|++++..
T Consensus 168 l~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 168 LALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999965 699999999965 577899999999999999999987753
No 197
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-40 Score=340.06 Aligned_cols=215 Identities=20% Similarity=0.263 Sum_probs=177.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc------cccCcEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~------~~~~~i~y 155 (679)
.+++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|.+... ..++.++|
T Consensus 14 ~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 93 (261)
T PRK14263 14 DKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGM 93 (261)
T ss_pred EEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEE
Confidence 3445566789999999999999999999999999999999999987522 258999999976421 34567999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|++.++ .+|+.||+.+....+. . ..+..++++++++.++|.+..+... +..++.||||||||++|||||+.+
T Consensus 94 v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~ 167 (261)
T PRK14263 94 VFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATE 167 (261)
T ss_pred EecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999887 5999999988654321 1 2234467888999999865332222 245678999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe--------CCeEEEecChhhHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS--------EGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~--------~G~iv~~G~~~~~~ 306 (679)
|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +|++++.|+++++.
T Consensus 168 p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 168 PEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 999999999999999999999999999964 799999999975 5789999999996 89999999987753
No 198
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-40 Score=370.43 Aligned_cols=214 Identities=21% Similarity=0.302 Sum_probs=181.4
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~ 157 (679)
+++++|+++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.++|++
T Consensus 3 nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 3 NISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK---DSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred ceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 455667777899999999999999999999999999999999999876 37999999976421 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+||+||+.+..........+..+..++++++++.+|+.+..++. +..|||||||||+||++|+.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~ 154 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAK 154 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCC
Confidence 9998999999999998753211011113344456788999999998766554 45799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|||||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 155 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999888999999999965 57889999999999999999987654
No 199
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.5e-40 Score=373.18 Aligned_cols=202 Identities=27% Similarity=0.433 Sum_probs=175.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEecCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVTQDDIL 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~Q~~~l 162 (679)
|+++.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... . .++.++|++|++.+
T Consensus 21 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (510)
T PRK15439 21 YSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP---DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLL 97 (510)
T ss_pred eCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCCCCHHHHHhCCEEEEeccCcc
Confidence 3346799999999999999999999999999999999999876 37999999976432 1 23469999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+... ...+.+++++++++.+||.+..++.+ +.|||||||||+||++|+.+|++||||
T Consensus 98 ~~~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~aL~~~p~lllLD 165 (510)
T PRK15439 98 FPNLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVEILRGLMRDSRILILD 165 (510)
T ss_pred CCCCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999999999987531 11234567889999999987666544 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|++++.
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999999999999999999888999999999965 57889999999999999999988765
No 200
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.3e-40 Score=383.95 Aligned_cols=203 Identities=30% Similarity=0.523 Sum_probs=173.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
..+|+|+|++|++||.+||+|+||||||||+|+|+|+++| .+|+|.+||.+... .+|+++|||+||+.+|..
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p---~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g- 561 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP---QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG- 561 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-
Confidence 3699999999999999999999999999999999999987 48999999988643 578999999999999875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSI-----AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|++||+.++. | ..+.++..+. +.+.+. .+....+|.+|+ ...+||||||||++|||||+++|+||+|
T Consensus 562 SI~eNi~l~~----p-~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 562 SIRENIALGN----P-EATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 9999998753 2 2233333222 222222 456677899985 5678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
|||||+||+.+++.|.+.|.++.+ |+|+|+++|+++ ..+.||||++|++|+++.+|+.+|.++.
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999865 799999999975 5789999999999999999999998764
No 201
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-40 Score=341.72 Aligned_cols=222 Identities=23% Similarity=0.333 Sum_probs=178.3
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccc
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHI 149 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~ 149 (679)
....++++++|+++.+|+|+|++|++||+++|+|+|||||||||++|+|+.+ |....+|+|.++|.+.. ...
T Consensus 24 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 103 (271)
T PRK14238 24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEEL 103 (271)
T ss_pred EEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHH
Confidence 3455667777777789999999999999999999999999999999999886 21235899999997642 134
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH
Q 005754 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA 229 (679)
Q Consensus 150 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 229 (679)
++.++|++|++.+++ .||+||+.+....+ ...+....++.+.+.++.+++.+..... -+..+..||||||||++||
T Consensus 104 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 104 RTNVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDR-LHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred hhhEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHH-HhcCcccCCHHHHHHHHHH
Confidence 568999999998887 49999998864322 1112223345567777777553211111 1345668999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 230 HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 230 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|++++.
T Consensus 180 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 180 RCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999976 799999999965 57889999999999999999988765
No 202
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-40 Score=325.88 Aligned_cols=172 Identities=48% Similarity=0.829 Sum_probs=152.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+|+++++||+++|+|||||||||||++|+|+..+ ...+|+|.++|++.....++.++|++|++.+++.+||+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehHHHhhhceEEecccCccccCCcHHH
Confidence 5699999999999999999999999999999999998642 135899999998754445678999999999999999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+.... + .||||||||++||+||+.+|++++|||||+|||+
T Consensus 99 ~l~~~~~~-------------------~------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 99 ALRFSALL-------------------R------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 (192)
T ss_pred HHHHHHHH-------------------h------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH
Confidence 99864210 0 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC-CeEEEec
Q 005754 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE-GRCLYFG 300 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~-G~iv~~G 300 (679)
.++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 142 ~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 142 QAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999877999999999976446789999999999 9999875
No 203
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.5e-39 Score=336.60 Aligned_cols=211 Identities=27% Similarity=0.367 Sum_probs=171.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCC-----ccc--------ccc
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK-----PTK--------HIS 150 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~-----~~~--------~~~ 150 (679)
++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+ ... ..+
T Consensus 9 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (253)
T TIGR02323 9 LSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP---DHGTATYIMRSGAELELYQLSEAERRRLMR 85 (253)
T ss_pred eEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEEecccccccccccCCHHHHHHhhh
Confidence 33444456789999999999999999999999999999999999876 47999999865 321 123
Q ss_pred CcEEEEecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHH
Q 005754 151 KRTGFVTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVS 227 (679)
Q Consensus 151 ~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ 227 (679)
+.++|++|++. +.+.+|+.||+.+..... . .....+..+.++++++.+|+.+ ..++ .++.|||||||||+
T Consensus 86 ~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 86 TEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----LPRAFSGGMQQRLQ 158 (253)
T ss_pred cceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----CchhcCHHHHHHHH
Confidence 56999999974 456679999987542211 1 0112234467889999999963 4443 45579999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||++. .+..++|++++|++|++++.|+++++
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998764 899999999965 57789999999999999999988765
No 204
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=357.58 Aligned_cols=219 Identities=29% Similarity=0.455 Sum_probs=185.2
Q ss_pred CCCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHH
Q 005754 40 SCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKST 119 (679)
Q Consensus 40 ~~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKST 119 (679)
.+.+++++.+|++|..+. ++++++|+|+++++|+.+||+|+|||||||
T Consensus 315 ~~~~~ei~~~~l~~~y~~--------------------------------g~~~l~~l~~t~~~g~~talvG~SGaGKST 362 (559)
T COG4988 315 NEPPIEISLENLSFRYPD--------------------------------GKPALSDLNLTIKAGQLTALVGASGAGKST 362 (559)
T ss_pred cCCCceeeecceEEecCC--------------------------------CCcccCCceeEecCCcEEEEECCCCCCHHH
Confidence 455677778888886531 237899999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 005754 120 MLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA 195 (679)
Q Consensus 120 LL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~ 195 (679)
|+++|+|+.+| .+|+|.+||.+.. ..++++++||+|++.+|+. |++||+.++.. ..+++ .+.+
T Consensus 363 Ll~lL~G~~~~---~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e----~i~~ 429 (559)
T COG4988 363 LLNLLLGFLAP---TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDE----EIIA 429 (559)
T ss_pred HHHHHhCcCCC---CCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH----HHHH
Confidence 99999999986 4899999998753 2578999999999999986 99999987531 12333 3455
Q ss_pred HHHHcCCC------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 005754 196 VMAELGLT------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269 (679)
Q Consensus 196 ~l~~lgL~------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~t 269 (679)
+++..||. +..|+.+|+ ..++|||||+|||++||||+++++++++||||++||.++++.|++.|.+++++ +|
T Consensus 430 al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-kt 507 (559)
T COG4988 430 ALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KT 507 (559)
T ss_pred HHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-Ce
Confidence 56665554 356777875 57789999999999999999999999999999999999999999999999874 99
Q ss_pred EEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 270 ii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
++++||++. ...-+|+|++|++|+++..|.++++.+
T Consensus 508 vl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 508 VLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHhh
Confidence 999999975 467899999999999999999988743
No 205
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.8e-40 Score=338.71 Aligned_cols=200 Identities=28% Similarity=0.520 Sum_probs=161.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 56999999999999999999999999999999999998763 7899999976422 34567999999988775 6
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKT-----SIAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+... ........ ...+++++.+ ++.... +..++.|||||||||+|||+|+.+|+++
T Consensus 91 tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 91 SIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIV-----GEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred hHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchh-----hcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999976421 11111111 1123344444 333322 2346689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|+++++.+
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999974 8999999999764 5 5699999999999999999877643
No 206
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=337.66 Aligned_cols=209 Identities=20% Similarity=0.308 Sum_probs=170.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~ 161 (679)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+.. ...++.++|++|++.
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 4569999999999999999999999999999999999976321 24799999997642 134568999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++. ||.||+.+....+. .. ...++.+++.++.+++...... .-+..+..|||||||||+|||||+.+|++|||
T Consensus 112 l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgGq~qrv~LAraL~~~p~lllL 185 (274)
T PRK14265 112 PFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKD-KLKEKGTALSGGQQQRLCIARAIAMKPDVLLM 185 (274)
T ss_pred cccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHH-HhcCCcccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 8875 99999987643221 11 1223446677888887422111 11345668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe---------CCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS---------EGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~---------~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||++++|+ +|++++.|+++++.
T Consensus 186 DEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 186 DEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999999999999999999975 689999999975 5889999999998 79999999998863
No 207
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.3e-39 Score=337.40 Aligned_cols=207 Identities=25% Similarity=0.355 Sum_probs=169.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC-CeeeEEEECCCCccc-c-ccCcEEEEecCCC--CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH-GLTGTILTNNNKPTK-H-ISKRTGFVTQDDI--LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~-~~~G~i~~~g~~~~~-~-~~~~i~yv~Q~~~--l~~~ 165 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.+... . .++.++||+|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 458999999999999999999999999999999999987621 157999999976532 2 2357999999974 4566
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+|+.+++.+.+.... ... ..++++++++.++|.+..+ .-+..++.|||||||||+|||||+.+|++|||||||
T Consensus 96 ~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~--~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt 168 (254)
T PRK10418 96 HTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAAR--VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168 (254)
T ss_pred ccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhh--hhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 899999876432211 111 2356788999999976210 112345679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|||+.++..+.+.|++++++ |.|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 169 ~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 169 TDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999764 899999999965 47789999999999999999998775
No 208
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2e-39 Score=335.42 Aligned_cols=211 Identities=28% Similarity=0.378 Sum_probs=170.5
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCCCccc----cccC-cEEEEecC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPTK----HISK-RTGFVTQD 159 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g~~~~~----~~~~-~i~yv~Q~ 159 (679)
+|+++.+|+|+|+++++||+++|+||||||||||+++|+|+. +| .+|+|.++|.+... ..++ .++|++|+
T Consensus 16 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~ 92 (252)
T CHL00131 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDLEPEERAHLGIFLAFQY 92 (252)
T ss_pred EeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccCChhhhheeeEEEEecc
Confidence 344456999999999999999999999999999999999973 33 57999999876432 1222 48899999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 160 DILYPHLTVRETLVFCSLLRLP----RTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
+.+++.+|+.|++.+....... ......+..++++++++.+|+. +..++.++ .+|||||||||+||+||+.
T Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~ 168 (252)
T CHL00131 93 PIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALL 168 (252)
T ss_pred ccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHc
Confidence 9999999999999875432110 0112223346678899999997 34443332 2599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhhH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++|++++.|+++.+
T Consensus 169 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 169 DSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999999999877999999999965 35555 899999999999999988743
No 209
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.2e-40 Score=306.99 Aligned_cols=197 Identities=36% Similarity=0.501 Sum_probs=173.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cc-cCcEEEEecCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HI-SKRTGFVTQDD 160 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~-~~~i~yv~Q~~ 160 (679)
+...||++|++.|++||-++|+|||||||||||-+++|+..| .+|+|.+.|++..+ .+ .+.+|+|||..
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~---ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP---SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC---CCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 346799999999999999999999999999999999999886 47999999987532 22 36899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+.|+||..||+...+.++.. +..+..+.+.++|+.+||.+..+ .++.+|||||+|||+||||++..|+|||
T Consensus 98 ~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~-----HyP~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 98 HLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLT-----HYPAQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccc-----cCccccCchHHHHHHHHHHhcCCCCEEe
Confidence 999999999999988777532 33455667888999999987543 4677899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
.||||-+||..+..+|.++|-.+.+ .|.|.|++||||. +..-|||.+-|.+|+++.
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999976 5999999999974 678899999999999874
No 210
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.2e-39 Score=340.26 Aligned_cols=205 Identities=27% Similarity=0.370 Sum_probs=173.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~ 161 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 5799999999999999999999999999999999999876 47999999975421 2356899999997 4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+++..|+.|++.+..... ......+..++++++++.+|+. +..++ .++.||||||||++|||+|+.+|++||
T Consensus 102 ~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 102 VNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred cCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCChHHHHHHHHHHHHhcCCCEEE
Confidence 667899999987643211 1123445556789999999996 44443 455799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||++++|++|++++.|++++..
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999999999865 899999999965 577899999999999999999987753
No 211
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=336.03 Aligned_cols=212 Identities=20% Similarity=0.335 Sum_probs=174.2
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCccc------cccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTK------HISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|++|++||+++|+||||||||||+++|+|+.. |....+|+|.++|.+... ..++.++|++|+
T Consensus 13 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~ 92 (250)
T PRK14266 13 FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQK 92 (250)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecC
Confidence 334569999999999999999999999999999999999864 211258999999976431 345689999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++. |+.||+.+..... .....+..++++.++++.+|+.+...... +..+..||||||||++|||+|+.+|++|
T Consensus 93 ~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~ll 168 (250)
T PRK14266 93 PNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVI 168 (250)
T ss_pred CccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 988885 9999998754321 11223345567888999999854221111 3456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.+|++++|++|++++.|++++.
T Consensus 169 llDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 169 LMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999965 899999999965 58899999999999999999998875
No 212
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=341.83 Aligned_cols=208 Identities=21% Similarity=0.342 Sum_probs=170.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~ 161 (679)
++.+|+|+||+|++||+++|+|||||||||||++|+|+.++.. ..+|+|.++|.+.. ...++.++|++|++.
T Consensus 51 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 3569999999999999999999999999999999999986311 25799999997642 134678999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++. ||.||+.+....+. .+. +..++++++++.+||.+..... -+..+..||||||||++|||+|+.+|++|||
T Consensus 131 l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LSgGe~qrv~LAraL~~~p~lLLL 204 (285)
T PRK14254 131 PFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQ-LDSSGLDLSGGQQQRLCIARAIAPDPEVILM 204 (285)
T ss_pred cCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHH-HhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8885 99999987654321 122 3445688899999985321111 1244668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEE-EEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVL-VLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~-lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.++..+.+.|++++++ .|||++||++. .+.+++||++ +|++|+++..|++++.
T Consensus 205 DEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 205 DEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 9999999999999999999999764 89999999965 5788999975 6799999999988765
No 213
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.2e-39 Score=330.40 Aligned_cols=194 Identities=28% Similarity=0.496 Sum_probs=168.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
+.+|+|+||++++||+++|+||||||||||+++|+|.++| .+|+|.++|.+... ..++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 5699999999999999999999999999999999999876 47999999976531 2356899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+|+.||+.+...... ....++.+++++++++.+||.+..++. ++.||||||||++|||+|+.+|++++|||
T Consensus 95 ~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv~laral~~~p~illlDE 167 (220)
T TIGR02982 95 GFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRVAIARALVHRPKLVLADE 167 (220)
T ss_pred CCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999998654321 123455566789999999998765544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
||+|||+.++..+.+.|+++++ .|+|||++||++. +.++||++++|++|++
T Consensus 168 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 168 PTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 9999999999999999999986 5899999999974 4689999999999986
No 214
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-39 Score=368.84 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=178.5
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEec
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQ 158 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q 158 (679)
++++|+++++|+|+|+++++||+++|+||||||||||||+|+|+.+|+ ..+|+|.++|++... ..++.++||+|
T Consensus 7 l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 85 (500)
T TIGR02633 7 IVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQ 85 (500)
T ss_pred EEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEee
Confidence 334455567999999999999999999999999999999999998752 248999999976432 12457999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.+++.+||.||+.+........ ....++..++++++++.+||.+..+ ++.++.|||||||||+||+||+.+|+
T Consensus 86 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LSgG~~qrv~iA~al~~~p~ 161 (500)
T TIGR02633 86 ELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV----TRPVGDYGGGQQQLVEIAKALNKQAR 161 (500)
T ss_pred ccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcc----cCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999998764322111 1233445567889999999976432 12345799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 162 LLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999999999888999999999965 5888999999999999999987754
No 215
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.2e-39 Score=334.54 Aligned_cols=199 Identities=30% Similarity=0.423 Sum_probs=171.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|.+... ..++.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 89999999999999999999999999999999998742 7999999976432 234569999999888888999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh-------CCCeEEE
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI-------NPSLLIL 241 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~-------~P~lllL 241 (679)
.||+.+.... .....+..++++++++.+||.+..++. ++.||||||||++||++|+. +|++|||
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999875321 122334456788999999998755544 45799999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+.+++
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999878999999999965 58899999999999999999987765
No 216
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=358.92 Aligned_cols=207 Identities=30% Similarity=0.440 Sum_probs=181.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc------cccccCcEEEEecCC--C
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP------TKHISKRTGFVTQDD--I 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~------~~~~~~~i~yv~Q~~--~ 161 (679)
...+++||||++++||++||+|+||||||||.|+|+|+.+| .+|+|.++|.+. ....++++-+||||+ .
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P---~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP---SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 46799999999999999999999999999999999999987 378999998761 123456788889886 6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|.|.+||++++......... ...++.++++.++++.+||... +.++++++||||||||++|||||+.+|++|++
T Consensus 380 LnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~ 453 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLIL 453 (539)
T ss_pred cCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEe
Confidence 89999999999876554322 2356677889999999999842 55788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||.||+..+.+++++|+++.++ |.|.|++|||.. -+..+||||++|++|++++.|+.+++.
T Consensus 454 DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999876 999999999965 689999999999999999999887763
No 217
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-40 Score=337.03 Aligned_cols=199 Identities=30% Similarity=0.475 Sum_probs=162.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lT 167 (679)
.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 699999999999999999999999999999999999876 47899999975421 34567999999998886 69
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTS-----IAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
|+||+.+.... ....+..+ .+++.++.+ ++.+..+ ..+..||||||||++||++|+.+|++++
T Consensus 92 v~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 92 VAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred HHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999874321 11211111 234555555 5554333 3456799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+|||+.++..+.+.|+++++ +.|||++||++. ++. .||++++|++|++++.|++++..+
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999999999999999999964 899999999975 454 499999999999999998877644
No 218
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-39 Score=346.29 Aligned_cols=209 Identities=21% Similarity=0.322 Sum_probs=174.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCcc------ccccCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPT------KHISKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~l 162 (679)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.++. ...+|+|.++|.+.. ..+++.++||||++.+
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999987532 124799999998753 1356789999999998
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLS-TKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++ .|++||+.|+.... ... ++..++.++++++.++|.+..++.++ +.+..||||||||++|||||+.+|+||||
T Consensus 175 ~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLL 249 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLM 249 (329)
T ss_pred CC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 85 79999999864321 122 22234457788899888544334443 45778999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.++||||++|++|+++..|+++++.
T Consensus 250 DEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 250 DEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999876 699999999965 577889999999999999999999874
No 219
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.1e-40 Score=377.69 Aligned_cols=199 Identities=27% Similarity=0.426 Sum_probs=169.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++++|||.+||+||||||||||+++|+|++ |+ +|+|.+||.+.. +.+++.++||+|++.+|+.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 56999999999999999999999999999999999999 63 799999997753 2568899999999999976
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. + ..++++. +++++..+ |++..||.+|+. ...||||||||++|||||+++|+||
T Consensus 438 TI~eNI~~g~----~-~~~~eei----~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~Il 507 (588)
T PRK11174 438 TLRDNVLLGN----P-DASDEQL----QQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLL 507 (588)
T ss_pred CHHHHhhcCC----C-CCCHHHH----HHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998852 1 2334333 33333333 345678889864 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+|++|++|+++..|+.++..+
T Consensus 508 iLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 508 LLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999885 4899999999974 467899999999999999999888753
No 220
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=311.09 Aligned_cols=209 Identities=31% Similarity=0.496 Sum_probs=181.9
Q ss_pred cccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 87 KIQERT--ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 87 ~~~~~~--iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
.|+++. +|+|||++|.+||.++++||||||||||||+++|..+| ..|+|.+||.++.. ....-|.|||++.++|
T Consensus 12 ~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P---~~G~i~l~~r~i~g-PgaergvVFQ~~~LlP 87 (259)
T COG4525 12 SYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEG-PGAERGVVFQNEALLP 87 (259)
T ss_pred ecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc---ccceEEECCEeccC-CCccceeEeccCccch
Confidence 344444 99999999999999999999999999999999999987 47999999987532 1223489999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+||.||+.|+..++ .+++.++.+++.+.+..+||++..+ +++-+|||||||||.|||||+.+|++|+||||
T Consensus 88 Wl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~-----~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP 159 (259)
T COG4525 88 WLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEH-----KYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159 (259)
T ss_pred hhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccc-----cceEeecchHHHHHHHHHHhhcCcceEeecCc
Confidence 999999999998876 5678899999999999999998654 45668999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC--CeEEEecChhhHHHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE--GRCLYFGKGSEAMSY 308 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~~ 308 (679)
+++||.-+++++.++|-++.+ .|+.++++||+.. +..-+++++++|+. ||++..=+++-...|
T Consensus 160 fgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 160 FGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999999999999999865 6999999999976 46668999999984 899987777644443
No 221
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=368.62 Aligned_cols=207 Identities=24% Similarity=0.371 Sum_probs=174.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDDI 161 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~~ 161 (679)
+|+++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.++||+|++.
T Consensus 13 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 89 (501)
T PRK11288 13 TFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP---DAGSILIDGQEMRFASTTAALAAGVAIIYQELH 89 (501)
T ss_pred EECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCCHHHHHhCCEEEEEechh
Confidence 34446799999999999999999999999999999999999876 37999999876421 24567999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++.+||.||+.+.............+.+++++++++.+||.+..++. +..|||||||||+||++|+.+|++|||
T Consensus 90 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllL 164 (501)
T PRK11288 90 LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIGQRQMVEIAKALARNARVIAF 164 (501)
T ss_pred ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999998853211111123444556788999999998655544 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 165 DEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999888999999999975 57889999999999999876653
No 222
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.7e-39 Score=327.95 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=169.4
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~ 159 (679)
..++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..+.
T Consensus 24 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~--------~~~~ 92 (224)
T cd03220 24 GILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRGRVSSL--------LGLG 92 (224)
T ss_pred hhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEchh--------hccc
Confidence 345678899999999999999999999999999999999999999999876 47999999865321 1112
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
..+.+.+||+||+.+....+ .....+.+++++++++.++|.+..++.+ +.||||||||++|||+|+.+|+++
T Consensus 93 ~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~ll 164 (224)
T cd03220 93 GGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDIL 164 (224)
T ss_pred ccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 34557799999998765432 1233445567888999999987766554 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|
T Consensus 165 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999877899999999965 577899999999999998765
No 223
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-39 Score=337.27 Aligned_cols=216 Identities=19% Similarity=0.295 Sum_probs=173.3
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEE
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTG 154 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~ 154 (679)
+++++|+++++|+|+|++|++||+++|+||||||||||+|+|+|+..+.. ..+|+|.++|.+.. ...++.++
T Consensus 15 ~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 94 (264)
T PRK14243 15 NLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIG 94 (264)
T ss_pred eeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEE
Confidence 33334445679999999999999999999999999999999999875311 25799999997542 13456799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|++|++.+++ .||.||+.+....+ ... .+..++++++++.+++.+..+. ..+..+..||||||||++|||||+.
T Consensus 95 ~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgGq~qrv~laral~~ 168 (264)
T PRK14243 95 MVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKD-KLKQSGLSLSGGQQQRLCIARAIAV 168 (264)
T ss_pred EEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHH-HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999998887 49999998764322 111 2234556777888887431111 1134566899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe---------CCeEEEecChhhH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS---------EGRCLYFGKGSEA 305 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~---------~G~iv~~G~~~~~ 305 (679)
+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +|++++.|+++++
T Consensus 169 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 169 QPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKI 246 (264)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 9999999999999999999999999999976 589999999965 5889999999998 7999999998876
Q ss_pred H
Q 005754 306 M 306 (679)
Q Consensus 306 ~ 306 (679)
.
T Consensus 247 ~ 247 (264)
T PRK14243 247 F 247 (264)
T ss_pred H
Confidence 3
No 224
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.8e-39 Score=331.71 Aligned_cols=221 Identities=28% Similarity=0.363 Sum_probs=173.2
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCCCccc----c-ccCcEEEEe
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPTK----H-ISKRTGFVT 157 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~ 157 (679)
+++|+++.+|+|+|++|++||+++|+||||||||||+++|+|+. +| .+|+|.++|.+... . .++.++|++
T Consensus 8 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (248)
T PRK09580 8 HVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLELSPEDRAGEGIFMAF 84 (248)
T ss_pred EEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccCCHHHHhhcceEEEe
Confidence 33444567999999999999999999999999999999999985 34 47999999976532 1 235699999
Q ss_pred cCCCCCCCCCHHHHHHHHhh-hcC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 158 QDDILYPHLTVRETLVFCSL-LRL--P-RTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
|++.+++.+|+.+++.+... .+. . ......+..+.+++.++.+++. +..++.+. +.|||||||||+|||||
T Consensus 85 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral 160 (248)
T PRK09580 85 QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMA 160 (248)
T ss_pred cCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHH
Confidence 99998888888777654321 110 0 0011223356678889999995 33333221 26999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhhHHHHHHH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSEAMSYFES 311 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~ 311 (679)
+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++|++++.|+++.+ +.++.
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~-~~~~~ 238 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLV-KQLEE 238 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHH-HHHHh
Confidence 9999999999999999999999999999999888899999999965 45555 899999999999999998755 44444
Q ss_pred cCC
Q 005754 312 VGF 314 (679)
Q Consensus 312 ~g~ 314 (679)
.++
T Consensus 239 ~~~ 241 (248)
T PRK09580 239 QGY 241 (248)
T ss_pred cCC
Confidence 433
No 225
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.9e-39 Score=322.91 Aligned_cols=170 Identities=56% Similarity=0.937 Sum_probs=152.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lT 167 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+. +| .+|+|.++|++... ..++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 56999999999999999999999999999999999998 65 47999999987543 35678999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
++||+.+..... .||||||||++|||||+.+|++++|||||+|
T Consensus 99 ~~~~i~~~~~~~-------------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~ 141 (194)
T cd03213 99 VRETLMFAAKLR-------------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSG 141 (194)
T ss_pred HHHHHHHHHHhc-------------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC
Confidence 999997642100 4999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||+.+++.+.+.|++++++|+|+|+++|++..++.+++|++++|++|++++.|
T Consensus 142 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 142 LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999998779999999999865678899999999999998764
No 226
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=355.32 Aligned_cols=215 Identities=28% Similarity=0.435 Sum_probs=192.3
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCc
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKR 152 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~ 152 (679)
....++.+|+|+..++|+||||++++||++||+|.||||||||+|+|+|.++|+ +|+|.++|++.. ......
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCC
Confidence 445678889999999999999999999999999999999999999999999874 799999998653 234568
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRL-PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
|+.|+|+..+.|+|||.||+.++...+. ...++.+..++++.++|+.+|+....+++++ .||.||||.|+||||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~VeIArA 159 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQMVEIARA 159 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHHHHHHHH
Confidence 9999999999999999999987765443 2335677888899999999999644667666 599999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|..+++||+||||||+|+....+.+.+.+++|+++|.+||++||.. ++++++|||+.+|.||+.+..++
T Consensus 160 l~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 160 LSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999996 57999999999999999998887
No 227
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=339.64 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=168.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccc-cCcEEEEecCCCCC--CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI-SKRTGFVTQDDILY--PHLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~-~~~i~yv~Q~~~l~--~~lT 167 (679)
+.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+..... ++.++|++|++.+. ...+
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL---ASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEhHHhhccceEEEeccccccccCCCcc
Confidence 5699999999999999999999999999999999999886 4799999997654333 34699999997642 2347
Q ss_pred HHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 168 VRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 168 V~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
++|++.+....... ........+++++++++.+||.+..++.+ ..||||||||++||+||+.+|++++|||||+
T Consensus 97 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~ 171 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVFLARAIAQQGQVILLDEPFT 171 (272)
T ss_pred hhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 89988653211000 00112233456788999999987666554 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+.+++.+.+.|++++++|+|||++||++. ++.++||+++++ +|++++.|+++++
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999878999999999965 578999999877 8999999988765
No 228
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-39 Score=403.23 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=195.8
Q ss_pred CccCCCCccccccc--cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccC
Q 005754 77 SSTDDQGSTAKIQE--RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISK 151 (679)
Q Consensus 77 ~~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~ 151 (679)
.++..++++|+|++ +.+|+|||+.|++||+++|+||||||||||+|+|+|..+|+ +|+|.++|.+... ..++
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHHHhh
Confidence 34566777888875 57999999999999999999999999999999999999864 7999999977532 3466
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
.+||+||++.+++.+||+|++.+.+.++ ..++++.+++++++++.+||.+.+|++++ +|||||||||+||+|
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIA 2084 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHH
Confidence 7999999999999999999999876654 23445556778899999999887776554 699999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
|+.+|+|+||||||+|||+.+++.+.+.|++++++|+|||++||++. ++.++|||+++|++|+++..|+++++.+.|.
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999999999999999888999999999964 6899999999999999999999999988775
No 229
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-39 Score=373.88 Aligned_cols=205 Identities=25% Similarity=0.359 Sum_probs=176.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~ 161 (679)
+.+|+||||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+... ..+++++||+|++ .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES---QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 4699999999999999999999999999999999999886 37999999975421 2356899999997 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+++.+||.||+.+....+ ....+++..++++++|+.+||. +..+ +++++|||||||||+|||||+.+|++||
T Consensus 414 l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~-----~~~~~LSgGqrQRv~iAraL~~~p~lll 486 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAW-----RYPHEFSGGQRQRICIARALALNPKVII 486 (623)
T ss_pred cCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 889999999998754332 1112444557788999999996 4344 4566899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||+|++|++|++++.|+++++.
T Consensus 487 lDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 487 ADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999875 899999999965 588999999999999999999988863
No 230
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-39 Score=334.51 Aligned_cols=210 Identities=23% Similarity=0.336 Sum_probs=171.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC--eeeEEEECCCCcc--------ccccCcEEEEecC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILTNNNKPT--------KHISKRTGFVTQD 159 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~--~~G~i~~~g~~~~--------~~~~~~i~yv~Q~ 159 (679)
++.+|+|+|++|++||+++|+||||||||||+++|+|+.+|..+ .+|+|.++|.+.. ...++.++|++|+
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 35699999999999999999999999999999999999875322 5899999986532 1345679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++. ||+||+.+..... ........+++++++++.+++.+.... .-++.+..||||||||++|||+|+.+|+++
T Consensus 108 ~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll 183 (265)
T PRK14252 108 PNPFPK-SIFENVAYGLRIR--GVKRRSILEERVENALRNAALWDEVKD-RLGDLAFNLSGGQQQRLCIARALATDPEIL 183 (265)
T ss_pred CcCCcc-hHHHHHHhHHHHc--CCChHHHHHHHHHHHHHHcCCchhhhH-HHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 998886 9999998764322 111122234567788888887421111 113345679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|++|+++..|+.++.
T Consensus 184 llDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 184 LFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999976 689999999965 57889999999999999999988765
No 231
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4e-39 Score=366.51 Aligned_cols=214 Identities=29% Similarity=0.409 Sum_probs=178.3
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECC-------------------
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNN------------------- 142 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g------------------- 142 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+. +| .+|+|.++|
T Consensus 6 l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~~~~~~~~~g~~~ 82 (520)
T TIGR03269 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCGYVERPSKVGEPC 82 (520)
T ss_pred EEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEecccccccccccccccccccc
Confidence 344455567999999999999999999999999999999999986 44 478888862
Q ss_pred ----CCc----------c----ccccCcEEEEecC-CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005754 143 ----NKP----------T----KHISKRTGFVTQD-DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203 (679)
Q Consensus 143 ----~~~----------~----~~~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 203 (679)
.+. . ...++.++|++|+ +.+++.+||+||+.+..... ..+..+.+++++++++.+||+
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 83 PVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred ccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCh
Confidence 111 0 1234679999997 67888999999998865432 123445567889999999998
Q ss_pred ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHH
Q 005754 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVY 282 (679)
Q Consensus 204 ~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~ 282 (679)
+..+. .++.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||++. .+.
T Consensus 160 ~~~~~-----~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~ 233 (520)
T TIGR03269 160 HRITH-----IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIE 233 (520)
T ss_pred hhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHH
Confidence 76554 4557999999999999999999999999999999999999999999999976 4999999999975 477
Q ss_pred HhCCeEEEEeCCeEEEecChhhHHHHH
Q 005754 283 QMFDKVLVLSEGRCLYFGKGSEAMSYF 309 (679)
Q Consensus 283 ~~~D~v~lL~~G~iv~~G~~~~~~~~f 309 (679)
++||++++|++|++++.|++++..+.+
T Consensus 234 ~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 899999999999999999988876644
No 232
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=8.8e-40 Score=335.21 Aligned_cols=201 Identities=27% Similarity=0.450 Sum_probs=160.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP---TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC---CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 4699999999999999999999999999999999999876 47999999976421 23567999999988876 6
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTS-----IAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+.... ....+..+ .+.+.++.+ ++.... +..++.|||||||||+||++|+.+|+++
T Consensus 92 tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~LS~G~~qrv~la~al~~~p~ll 161 (238)
T cd03249 92 TIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLV-----GERGSQLSGGQKQRIAIARALLRNPKIL 161 (238)
T ss_pred hHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceee-----ccCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999874321 11111111 112222333 333222 2345789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
+|||||+|||+.+++.+.+.|++++ +|+|||++||++. ++ ..||++++|++|++++.|+.++..+.
T Consensus 162 llDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 162 LLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999997 7999999999975 45 48999999999999999988776544
No 233
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-39 Score=325.27 Aligned_cols=194 Identities=26% Similarity=0.376 Sum_probs=164.9
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILY 163 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~ 163 (679)
+++++++.+|+++|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++.++|++|++.++
T Consensus 18 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~ 94 (214)
T PRK13543 18 AFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV---ESGQIQIDGKTATRGDRSRFMAYLGHLPGLK 94 (214)
T ss_pred EEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCeeEEECCEEccchhhhhceEEeecCcccc
Confidence 3344456799999999999999999999999999999999999886 37999999976532 2345699999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+|+.||+.+....+. . ...+.++++++.++|.+..++.+ ..||||||||++|||+++.+|++++|||
T Consensus 95 ~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 95 ADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred cCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999987643321 1 12345678899999987666544 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
||+|||+.+++.+.+.|++++++|.|||++||++. ++.+++|++++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999888999999999965 58899999999863
No 234
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=372.75 Aligned_cols=201 Identities=27% Similarity=0.420 Sum_probs=170.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+..+ .+++.++||+|++.+|+.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~- 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI---DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND- 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC---CCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-
Confidence 5699999999999999999999999999999999999987 47999999987532 467889999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. +...++++ ++++++..| |++..||.+|+. .+.||||||||++|||||+++|+++
T Consensus 432 Ti~~Ni~~~~----~~~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~il 502 (582)
T PRK11176 432 TIANNIAYAR----TEQYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_pred hHHHHHhcCC----CCCCCHHH----HHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998742 11123333 444444444 445578888864 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||+|++|++|+++..|+.++..+
T Consensus 503 ilDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 503 ILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999854 799999999974 567899999999999999999888753
No 235
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-39 Score=340.04 Aligned_cols=214 Identities=22% Similarity=0.385 Sum_probs=172.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~ 159 (679)
|+++.+|+++|++|++||+++|+|||||||||||++|+|++++. ...+|+|.++|.+... ..++.++|++|+
T Consensus 55 ~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~ 134 (305)
T PRK14264 55 YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQS 134 (305)
T ss_pred eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccC
Confidence 33456999999999999999999999999999999999997531 1358999999975421 245689999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCC---------CCCC-HHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH
Q 005754 160 DILYPHLTVRETLVFCSLLRLP---------RTLS-TKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA 229 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 229 (679)
+.+++ .||+||+.+....... .... ....++.++++++.+++.+...... +..++.|||||||||+||
T Consensus 135 ~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LA 212 (305)
T PRK14264 135 PNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIA 212 (305)
T ss_pred Ccccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHH
Confidence 98887 4999999986432100 0011 2233566888999998853222222 345678999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeE-EEEeCCeEEEecChhhH
Q 005754 230 HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKV-LVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 230 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v-~lL~~G~iv~~G~~~~~ 305 (679)
+||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||++ ++|++|++++.|++++.
T Consensus 213 raL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 213 RCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999977 489999999975 578899997 57899999999998765
No 236
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.5e-39 Score=329.54 Aligned_cols=194 Identities=31% Similarity=0.509 Sum_probs=160.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP---TSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 4699999999999999999999999999999999999876 37899999976421 23567999999998887 6
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG------NSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
||.||+.+... ... .+.++++++.+++.+..+.... ...+..||||||||++||++|+.+|++|+
T Consensus 93 tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 163 (220)
T cd03245 93 TLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILL 163 (220)
T ss_pred hHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999976421 111 2345567788888765543221 12356899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++++|++|++++.|
T Consensus 164 lDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 164 LDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999764 89999999975 34 799999999999998754
No 237
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.4e-39 Score=322.77 Aligned_cols=190 Identities=28% Similarity=0.432 Sum_probs=163.2
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+|++|++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|.+.. ...++.++|++|++
T Consensus 6 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (201)
T cd03231 6 LTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAP 82 (201)
T ss_pred EEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhhhheEEecccc
Confidence 344455677999999999999999999999999999999999998763 789999987642 23567899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+|++||+.+.... ...++++++++.+|+.+..++. ++.||||||||++|||+|+.+|++++
T Consensus 83 ~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 83 GIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred ccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999874311 0234678899999998766554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
|||||+|||+.++..+.+.|++++++|.|+|++||++. +....+|+++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999888999999999976 477899999887
No 238
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.1e-39 Score=323.74 Aligned_cols=191 Identities=26% Similarity=0.404 Sum_probs=161.6
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEecCCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVTQDDIL 162 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~Q~~~l 162 (679)
++++++++|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+.. ...++.++|++|++.+
T Consensus 9 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (204)
T PRK13538 9 CERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGI 85 (204)
T ss_pred EEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhhhheEEeCCcccc
Confidence 3344567999999999999999999999999999999999998863 799999997643 2345679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|+.||+.+....+. . ...++++++++.+||.+..++. ++.||||||||++||+||+++|++++||
T Consensus 86 ~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllD 154 (204)
T PRK13538 86 KTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVALARLWLTRAPLWILD 154 (204)
T ss_pred CcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999988653321 1 2345678899999998765544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
|||+|||+.++..+.+.|++++++|.|||++||++. .+.+..+|++++
T Consensus 155 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 155 EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 999999999999999999999877999999999975 466666777766
No 239
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-39 Score=331.76 Aligned_cols=199 Identities=30% Similarity=0.461 Sum_probs=160.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~- 91 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP---QKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG- 91 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-
Confidence 4599999999999999999999999999999999999876 37899999976432 346679999999988875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN-------TIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+.... ... ..+++.++.+++.+..+ +.. +..++.|||||||||+||++|+.+|+++
T Consensus 92 tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 92 TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999764211 111 12233334333332211 111 2346789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.+++.+++.|++++ +|+|||++||++.. + ..||++++|++|++++.|+.++..
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999996 58999999999753 5 469999999999999999876654
No 240
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.2e-39 Score=328.58 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=163.9
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD 160 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~ 160 (679)
++.|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++
T Consensus 14 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 90 (225)
T PRK10247 14 GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90 (225)
T ss_pred EEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEcCcCCHHHHHhccEEEeccc
Confidence 3344456799999999999999999999999999999999999876 47999999875422 2456899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+++ .||+||+.+....+. .. ...++++++++.+|+. ...++ .++.||||||||++||++|+.+|+++
T Consensus 91 ~l~~-~tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 91 TLFG-DTVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred cccc-ccHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8887 499999987543321 11 1234577899999995 33443 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEe-CCeEEEecC
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLS-EGRCLYFGK 301 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~-~G~iv~~G~ 301 (679)
+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+ ..||++++|+ ++..+.+|.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 999999999999999999999999764 899999999975 35 5799999995 455555554
No 241
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.9e-39 Score=364.78 Aligned_cols=205 Identities=32% Similarity=0.463 Sum_probs=173.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~ 161 (679)
+.+|+|+|++|++||+++|+||||||||||+|+|+|+.+ .+|+|.++|.+... ..++.++||+|++ .
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~----~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 374 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN----SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSS 374 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC----CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhh
Confidence 579999999999999999999999999999999999974 37999999965421 1256799999996 4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+++.+||.||+.+....+.. ..+..+.+++++++++.+||. +..++ .++.|||||||||+||++|+.+|++||
T Consensus 375 l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lll 448 (529)
T PRK15134 375 LNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPAEFSGGQRQRIAIARALILKPSLII 448 (529)
T ss_pred cCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 78889999999886432211 123344556788999999996 34444 455799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|+++..|+++++.
T Consensus 449 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 449 LDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred eeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999875 899999999965 588899999999999999999887763
No 242
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-39 Score=314.25 Aligned_cols=162 Identities=37% Similarity=0.644 Sum_probs=146.1
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEecCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVTQDDILY 163 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~Q~~~l~ 163 (679)
+++++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. ...++.++|++|++.++
T Consensus 9 ~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (173)
T cd03230 9 RYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLY 85 (173)
T ss_pred EECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccchHhhhccEEEEecCCccc
Confidence 33345699999999999999999999999999999999999876 3799999997643 23456899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+|+.||+. ||||||||++|||+|+.+|++++|||
T Consensus 86 ~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDE 121 (173)
T cd03230 86 ENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDE 121 (173)
T ss_pred cCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999873 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
||+|||+.++..+.+.|++++++|.|+|++||++. ++.+.+|++++|++|++
T Consensus 122 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 122 PTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999887999999999965 57789999999999974
No 243
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1e-38 Score=363.23 Aligned_cols=220 Identities=24% Similarity=0.382 Sum_probs=177.9
Q ss_pred CCCCcccccc-----ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC-CCCc---c----
Q 005754 80 DDQGSTAKIQ-----ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN-NNKP---T---- 146 (679)
Q Consensus 80 ~~~~~~~~~~-----~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~-g~~~---~---- 146 (679)
..++++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.++ |.+. .
T Consensus 281 ~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 281 KVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP---TSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred EEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEEecCCccccccccch
Confidence 3444444442 25699999999999999999999999999999999999876 37999996 5321 1
Q ss_pred ---ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHH
Q 005754 147 ---KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGER 223 (679)
Q Consensus 147 ---~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 223 (679)
...+++++|++|++.+++.+||.||+.+..... .+.++.+++++++++.+||.+.......++.++.||||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 123457999999998999999999998753221 2233345678899999999752100011344568999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||+||+||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++||++. .+.++||++++|++|+++..|++
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999765 899999999975 58899999999999999999998
Q ss_pred hhHHH
Q 005754 303 SEAMS 307 (679)
Q Consensus 303 ~~~~~ 307 (679)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 77643
No 244
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.3e-39 Score=371.00 Aligned_cols=203 Identities=33% Similarity=0.547 Sum_probs=173.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
++++|+|+|+++++||.+||+||||||||||+|.|.|+++| .+|+|.+||.+... .+|+.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 46799999999999999999999999999999999999986 48999999977542 57889999999999998
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHH-----HHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAE-----AVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
-||+||+.++.. ..++++..+.++ +.+. .+.+..||.+| +....||||||||++||||++++|++|+
T Consensus 417 ~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 417 GTIRENIALGRP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 699999998632 134444433333 2233 34567899999 4566799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+||+.+...+.+.++++. +++|+++++|+++. + +.+|+|++|++|++++.|++++...
T Consensus 489 LDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 489 LDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999887 57899999999854 4 4599999999999999999999865
No 245
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.7e-39 Score=378.35 Aligned_cols=197 Identities=30% Similarity=0.456 Sum_probs=168.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+.. ..+|+.+|||+|++.+|+.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p---~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP---ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG- 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-
Confidence 5699999999999999999999999999999999999987 4799999998754 2578899999999999976
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + .+.+ .+.++++..|+. +..||.+|+. ...||||||||++|||||+++|++|
T Consensus 542 TI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 542 SIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred cHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998742 1 2232 344555555543 4567888754 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+++.+.+.|+++ ++|+|++||+++ ..+.+|+|++|++|++++.|+.+++++
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999886 579999999974 467899999999999999999988753
No 246
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-39 Score=363.95 Aligned_cols=219 Identities=24% Similarity=0.374 Sum_probs=180.0
Q ss_pred cCCCCccccc---cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----ccc
Q 005754 79 TDDQGSTAKI---QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HIS 150 (679)
Q Consensus 79 ~~~~~~~~~~---~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~ 150 (679)
+..+++++.| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ..+|+|.++|++... ..+
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG--RWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred EEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC--CCCcEEEECCEECCCCCHHHHHH
Confidence 4456666666 345799999999999999999999999999999999999873 137999999865421 234
Q ss_pred CcEEEEecCC---CCCCCCCHHHHHHHHhhhcCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHH
Q 005754 151 KRTGFVTQDD---ILYPHLTVRETLVFCSLLRLPR--TLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 151 ~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerq 224 (679)
+.++|++|++ .+++.+||.||+.+........ ..+.++.+++++++++.+++. +..++. ++.|||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~kq 412 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLSGGNQQ 412 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCCHHHHH
Confidence 5799999995 4788899999998753211110 112334456788999999996 455554 4579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 225 RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 225 Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEecccc
Confidence 999999999999999999999999999999999999999888999999999965 5889999999999999999998765
Q ss_pred H
Q 005754 305 A 305 (679)
Q Consensus 305 ~ 305 (679)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 4
No 247
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-38 Score=368.31 Aligned_cols=198 Identities=23% Similarity=0.346 Sum_probs=171.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|+ +|+|.+||.+..+ .++++++||+|++.+|+.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~- 429 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD- 429 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-
Confidence 35899999999999999999999999999999999999874 7899999987542 568899999999999987
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. ..++ ++++++++.+|+. +..||.+|+ ....||||||||++|||||+++|+|+
T Consensus 430 Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 430 TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998752 1222 2355566666644 456788875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|+++..|+.++..
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999865 699999999974 46789999999999999999998874
No 248
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-38 Score=363.74 Aligned_cols=211 Identities=27% Similarity=0.403 Sum_probs=175.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc-------ccc-CcEEEEecCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK-------HIS-KRTGFVTQDD 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~-------~~~-~~i~yv~Q~~ 160 (679)
+.+|+|+||++++||+++|+||||||||||||+|+|+++|. ...+|+|.++|.+... ..+ +.+||++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 57999999999999999999999999999999999998752 1258999999976421 122 5799999997
Q ss_pred C--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 161 I--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 161 ~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
. +++.+|++|++.+..... ...+..+..++++++++.+||.+..+ ..++.+++|||||||||+|||||+.+|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~~~~LSgGe~qrv~iAraL~~~p~l 177 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAK--RLTDYPHQLSGGERQRVMIAMALLTRPEL 177 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHH--HHhhCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 4 677789999987643221 12334556678899999999975221 11334567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||||++|++|++++.|+++++.
T Consensus 178 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 178 LIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999875 899999999975 578899999999999999999887763
No 249
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=9.8e-39 Score=330.18 Aligned_cols=194 Identities=29% Similarity=0.431 Sum_probs=163.7
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+++|+++.+|+|+||+|++||+++|+|||||||||||++|+|+.+| .+|+|.+++ +..++|++|++.+++
T Consensus 11 ~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~~-------~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 11 SVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVIKRNG-------KLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECC-------ccCEEEecccccccc
Confidence 3344456799999999999999999999999999999999999876 478999876 246999999987777
Q ss_pred CC--CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 165 HL--TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 165 ~l--TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
.+ |+.+++.+. + ... .+++.++++.+||.+..++. ++.||||||||++||++|+.+|+++|||
T Consensus 81 ~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLD 145 (251)
T PRK09544 81 TLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLLARALLNRPQLLVLD 145 (251)
T ss_pred ccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 63 788876431 1 111 23467889999998766554 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+ |+++..|++++.
T Consensus 146 EPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~ 207 (251)
T PRK09544 146 EPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVV 207 (251)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHH
Confidence 999999999999999999999875 899999999965 5788999999996 579999988765
No 250
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.9e-39 Score=376.57 Aligned_cols=219 Identities=29% Similarity=0.540 Sum_probs=184.5
Q ss_pred eEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH
Q 005754 44 ITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNV 123 (679)
Q Consensus 44 ~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~ 123 (679)
-.++|+|++|+.+.+. +..||+|+|+.|++|+.+||+|||||||||++++
T Consensus 349 g~ief~nV~FsYPsRp------------------------------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~L 398 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRP------------------------------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQL 398 (1228)
T ss_pred cceEEEEEEecCCCCC------------------------------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHH
Confidence 4589999999886432 3569999999999999999999999999999999
Q ss_pred HhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHH-----H
Q 005754 124 LAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA-----E 194 (679)
Q Consensus 124 L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~ 194 (679)
|.+++.| .+|+|.+||.+.. +.+|.+||.|.|+|.+|. .|++||+.|+. .+.+.++..+.. .
T Consensus 399 L~RfydP---~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat~~~i~~a~k~ana~ 469 (1228)
T KOG0055|consen 399 LARFYDP---TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDATREEIEEAAKAANAH 469 (1228)
T ss_pred HHHhcCC---CCceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC-----CcccHHHHHHHHHHccHH
Confidence 9999987 4899999998864 356889999999998886 69999999863 122333332222 2
Q ss_pred HHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 005754 195 AVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274 (679)
Q Consensus 195 ~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~t 274 (679)
+.+ ..|.+..||.+|++.+. ||||||||++|||||+++|+|||||||||+||++++..+.+.|.++. +|+|.|+++
T Consensus 470 ~fi--~~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVa 545 (1228)
T KOG0055|consen 470 DFI--LKLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVA 545 (1228)
T ss_pred HHH--HhhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEe
Confidence 222 35677889999986554 99999999999999999999999999999999999999999998875 489999999
Q ss_pred CCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 275 HQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 275 H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|+.+. + +.+|++++|++|++++.|+++|+++
T Consensus 546 HRLSt-I-rnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 546 HRLST-I-RNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred eehhh-h-hccCEEEEEECCEEEEecCHHHHHh
Confidence 99764 5 4599999999999999999999875
No 251
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.8e-39 Score=378.83 Aligned_cols=198 Identities=29% Similarity=0.459 Sum_probs=168.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+..+ .+|+.++||+|++.+|+.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG- 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-
Confidence 56999999999999999999999999999999999999874 7999999987542 568899999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. + ..+.++ +.++++..++ ....||.+|+. ...||||||||++|||||+++|++|
T Consensus 568 Ti~eNi~l~~----~-~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSGGQrQRiaLARall~~p~il 637 (710)
T TIGR03796 568 TVRDNLTLWD----P-TIPDAD----LVRACKDAAIHDVITSRPGGYDAELAEG-GANLSGGQRQRLEIARALVRNPSIL 637 (710)
T ss_pred cHHHHhhCCC----C-CCCHHH----HHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 9999998642 1 123332 3444444444 34567888754 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+.+.|++ .++|+|++||+++ ..+.||+|++|++|+++..|+.+++++
T Consensus 638 iLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 638 ILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999986 4899999999975 457799999999999999999998764
No 252
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=8.7e-39 Score=319.61 Aligned_cols=183 Identities=31% Similarity=0.421 Sum_probs=154.7
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCCCccc----c-ccCcEEEEe
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPTK----H-ISKRTGFVT 157 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~ 157 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|.. +| .+|+|.++|.+... . .++.++|++
T Consensus 7 ~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (200)
T cd03217 7 HVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLPPEERARLGIFLAF 83 (200)
T ss_pred EEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCCHHHHhhCcEEEee
Confidence 34444567999999999999999999999999999999999984 43 57999999976532 1 234599999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++..|+++++. ...+.||||||||++|||+|+.+|+
T Consensus 84 q~~~~~~~~~~~~~l~---------------------------------------~~~~~LS~G~~qrv~laral~~~p~ 124 (200)
T cd03217 84 QYPPEIPGVKNADFLR---------------------------------------YVNEGFSGGEKKRNEILQLLLLEPD 124 (200)
T ss_pred cChhhccCccHHHHHh---------------------------------------hccccCCHHHHHHHHHHHHHhcCCC
Confidence 9999898888887660 0113599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHH-hCCeEEEEeCCeEEEecChhhHHHHHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQ-MFDKVLVLSEGRCLYFGKGSEAMSYFES 311 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~-~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 311 (679)
+++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .+|++++|++|++++.|+. ++.++|.+
T Consensus 125 illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~~~ 197 (200)
T cd03217 125 LAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELALEIEK 197 (200)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHHhhhcc
Confidence 99999999999999999999999999877999999999975 4666 7999999999999999944 45555543
No 253
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-39 Score=370.01 Aligned_cols=208 Identities=26% Similarity=0.371 Sum_probs=174.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc-------------c-c---cc-cCc
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP-------------T-K---HI-SKR 152 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~-------------~-~---~~-~~~ 152 (679)
.++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|... . . .. ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999864 68887776421 1 0 12 247
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 153 TGFVTQDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 153 i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
+|||+|++ .+++.+||.||+.+...... ..+..+.+++++++++.+||.+..+ ..++++.+|||||||||+||+
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~~~~LSgGq~QRv~iA~ 181 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT--ILSRYPHQLSGGMRQRVMIAM 181 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh--HHhCCCccCCHHHHHHHHHHH
Confidence 99999997 68889999999998754321 2345556678899999999964210 123456789999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+.+|++|||||||+|||+.++.++.++|++++++ |+|||++||++. .+.++||||++|++|++++.|+++++.
T Consensus 182 AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 182 ALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 999999999999999999999999999999999865 999999999965 578999999999999999999987763
No 254
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-39 Score=329.94 Aligned_cols=199 Identities=30% Similarity=0.487 Sum_probs=159.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 89 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D 89 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c
Confidence 5699999999999999999999999999999999999876 47899999976432 34567999999998886 6
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTS-----IAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+.... .+..+..+ .+.+.++.+ ++.. .+ ++.++.||||||||++||++|+.+|+++
T Consensus 90 tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~~~~~~----~~-~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 90 TIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRFPDGYDT----IV-GERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred hHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccc----hh-hcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999875311 11211111 112223332 2222 22 2345689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|+.++..
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999977 9999999999753 5 459999999999999999876653
No 255
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-39 Score=348.07 Aligned_cols=199 Identities=31% Similarity=0.522 Sum_probs=170.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
++||+++||+|++||-+||+|+|||||||+||+|.+... .+|+|.+||.+..+ .+|+.|||||||..||.+
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d----~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd- 439 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD----YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND- 439 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc----cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-
Confidence 459999999999999999999999999999999999886 38999999998643 578899999999999976
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-------GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||.+|+.|+.. ..+.++..+ +.++. .+++..+|.+|++ ...|||||||||+||||++++|+|+
T Consensus 440 TIl~NI~YGn~-----sas~eeV~e----~~k~a~~hd~i~~l~~GY~T~VGer-G~~LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 440 TILYNIKYGNP-----SASDEEVVE----ACKRAGLHDVISRLPDGYQTLVGER-GLMLSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred hHHHHhhcCCC-----CcCHHHHHH----HHHHcCcHHHHHhccccchhhHhhc-ccccccchHHHHHHHHHHhcCCCeE
Confidence 99999998742 234443332 33333 3456677888864 5669999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
++|||||.||.++..++++.+++ ...|+|+|++.|+.. ...-||+|++|++|++...|+.++++.
T Consensus 510 ~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 510 LLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999 345899999999964 678899999999999999999999876
No 256
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-39 Score=297.51 Aligned_cols=212 Identities=31% Similarity=0.462 Sum_probs=183.6
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc------c----ccccC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP------T----KHISK 151 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~------~----~~~~~ 151 (679)
.++...||..++|.||+++.+.||-+.++||||+|||||++.|.-+..|. +|+..+.|... . ..+|+
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999877653 67777765431 1 24678
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
.+|+|+|+-.++|.+||.||+.-+- .+. ..+++++.+.++.++|+++.|.+.+| +++-.|||||+|||+||||
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~ad-----r~plhlsggqqqrvaiara 155 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYAD-----RYPLHLSGGQQQRVAIARA 155 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccc-----cCceecccchhhhHHHHHH
Confidence 9999999999999999999996532 121 24678888899999999999998776 4566799999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
|+.+|.+|++||||++|||+-..++++++++|+..|.|-+++||... -..+.+.+|+.|.+|+|++.|+.+.
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999999999999999965 4678999999999999999998653
No 257
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-40 Score=313.51 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=192.0
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEE
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFV 156 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv 156 (679)
.++++|.|+++.+|+++|++|++|.+++++|||||||||||.+++.+++. .+|+|.++|.+.. +.+.++++..
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~---d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK---DSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc---cCceEEEeeeecccCChHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999875 4899999998753 3567889999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
-|+...-..+||+|-+.|+..... .....++.+..+++.++.++|++..|+ +..+||||||||.-||..++.+.
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dr-----yLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDR-----YLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHH-----hHHhcccchhhhhhhheeeeccC
Confidence 999998889999999999743221 223456777889999999999987664 45579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+.++||||.++||-....++|+.|++++++ |+||+++.||.+. .-.++|+|+-|++|+++..|+++++.+
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHhcC
Confidence 999999999999999999999999999986 9999999999874 778999999999999999999998753
No 258
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.3e-38 Score=315.56 Aligned_cols=178 Identities=33% Similarity=0.502 Sum_probs=150.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecCCC-
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQDDI- 161 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~- 161 (679)
+++.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. ...++.++|++|++.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 79 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceeEEECCEEccccccchHHHHhhEEEEecChhh
Confidence 346799999999999999999999999999999999999876 4799999997642 123567999999973
Q ss_pred -CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 -LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 -l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
++ ..||+||+.+..... ..+..+..++++++++.+||.+..++. ++.||||||||++|||||+.+|++++
T Consensus 80 ~~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lll 150 (190)
T TIGR01166 80 QLF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLL 150 (190)
T ss_pred ccc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44 479999998864322 123444556788999999998765544 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
|||||+|||+.+++.+.+.|++++++|+|||++||++.
T Consensus 151 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 151 LDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999999888999999999964
No 259
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=361.90 Aligned_cols=213 Identities=23% Similarity=0.392 Sum_probs=175.5
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i 153 (679)
...+++++.++ .+|+|+||++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++... ..++.+
T Consensus 266 l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 266 FEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHHHHHCCc
Confidence 44555555442 4899999999999999999999999999999999998863 7999999875421 235679
Q ss_pred EEEecC---CCCCCCCCHHHHHHHHhhhc---CC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHH
Q 005754 154 GFVTQD---DILYPHLTVRETLVFCSLLR---LP---RTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGER 223 (679)
Q Consensus 154 ~yv~Q~---~~l~~~lTV~E~l~~~~~~~---~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGer 223 (679)
|||+|+ ..+++.+||.||+.+....+ .. ........+++++++++.+||. +..++.+ +.||||||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~ 415 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQ 415 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHH
Confidence 999998 46889999999998753211 00 0012233345678999999996 6565554 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+.++||++++|++|+++..++.
T Consensus 416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999999888999999999965 58899999999999999988865
No 260
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=323.68 Aligned_cols=198 Identities=23% Similarity=0.329 Sum_probs=170.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
..+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|. +++++|+..+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~~g~---------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDRNGE---------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE---------EeEEecccCCCCCCcH
Confidence 4567999999999999999999999999999999999998863 789999884 4577788777888999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
.||+.+..... ....++..+.++++++.+++.+..++. ++.||||||||++||++|+.+|++|||||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998754332 123444556678889999998766544 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 249 DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|+.++..+++.|.+++++|+|||++||++. .+.+++|++++|++|+++..|+.+++.+
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999878999999999965 5788999999999999999999887654
No 261
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.1e-38 Score=366.67 Aligned_cols=200 Identities=31% Similarity=0.531 Sum_probs=171.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+|+|+|.++| .+|+|.+||.+..+ .+++.++||+|++.+|+.
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP---QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA- 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-
Confidence 4689999999999999999999999999999999999986 47999999987532 567889999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
|++||+.++. + ..+ ++.++++++..++.+ ..||.+|+ ....||||||||++|||||+++|++++
T Consensus 429 ti~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 429 TLRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred cHHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998753 1 112 234566777777754 35788875 366799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+||+.+++.+.+.|+++. +++|+|+++|+++. .+.+|++++|++|++++.|+.++.++
T Consensus 499 lDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 499 LDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999986 48999999999853 46799999999999999999888753
No 262
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.3e-38 Score=317.76 Aligned_cols=189 Identities=28% Similarity=0.404 Sum_probs=158.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|.+... ..++.++|++|++
T Consensus 6 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (198)
T TIGR01189 6 LACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDEPHRNILYLGHLP 82 (198)
T ss_pred EEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccchHHhhhheEEeccCc
Confidence 34445567799999999999999999999999999999999999876 47999999976422 3456799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||.||+.+....+. . + .++++++++.+|+.+..++.+ +.||||||||++||++|+.+|++++
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~----~--~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lll 150 (198)
T TIGR01189 83 GLKPELSALENLHFWAAIHG----G--A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWI 150 (198)
T ss_pred ccccCCcHHHHHHHHHHHcC----C--c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 88998999999987543321 1 1 345778899999987665544 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEE
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV 290 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~l 290 (679)
|||||+|||+.++..+.+.|++++++|.|||++||++.. -.+++++.
T Consensus 151 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 151 LDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999998889999999999753 34677664
No 263
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-38 Score=345.44 Aligned_cols=198 Identities=27% Similarity=0.357 Sum_probs=168.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|... ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~---------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAA---------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEee---------eEEeccccCCCCcHHH
Confidence 4699999999999999999999999999999999999876 479999998541 2233445667789999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+..... ..+..+..++++++++.++|.+..++. ++.||||||||++|||||+.+|++|||||||+|||+
T Consensus 105 nL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 998754322 123445556778899999998766554 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHH
Q 005754 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYF 309 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 309 (679)
.++..+++.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.+.|
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999999999999878999999999965 588899999999999999999998876544
No 264
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-38 Score=312.84 Aligned_cols=165 Identities=39% Similarity=0.654 Sum_probs=147.0
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEec
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQ 158 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q 158 (679)
+++|+++++|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|.+.. ...++.++|++|
T Consensus 7 ~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 83 (178)
T cd03229 7 SKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLTDLEDELPPLRRRIGMVFQ 83 (178)
T ss_pred EEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccchhHHHHhhcEEEEec
Confidence 3444456799999999999999999999999999999999999876 4799999997542 234568999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++.+|++||+.+. ||||||||++||++|+.+|++
T Consensus 84 ~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~l 121 (178)
T cd03229 84 DFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDV 121 (178)
T ss_pred CCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCE
Confidence 99999899999987531 899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+++|++++|++|+
T Consensus 122 lilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999887 899999999965 5777999999999885
No 265
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2e-38 Score=359.16 Aligned_cols=217 Identities=24% Similarity=0.377 Sum_probs=178.5
Q ss_pred cCCCCccccc---cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----cccc
Q 005754 79 TDDQGSTAKI---QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHIS 150 (679)
Q Consensus 79 ~~~~~~~~~~---~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~ 150 (679)
+..++++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| ..+|+|.++|++.. ...+
T Consensus 258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG--KFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC--CCCeEEEECCEECCCCCHHHHHh
Confidence 4455666666 345799999999999999999999999999999999999874 13799999987642 1235
Q ss_pred CcEEEEecCC---CCCCCCCHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHH
Q 005754 151 KRTGFVTQDD---ILYPHLTVRETLVFCSLLRLP--RTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 151 ~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 224 (679)
++++|++|+. .+++.+||+||+.+....... ........+++++++++.+++.+ ..++. ++.|||||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkq 410 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLSGGNQQ 410 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCCHHHHH
Confidence 6799999995 588999999999875321110 01123344567889999999964 44544 4579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChh
Q 005754 225 RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGS 303 (679)
Q Consensus 225 Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 303 (679)
||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|+++..++.+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999888999999999965 588999999999999999877654
No 266
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.7e-38 Score=312.83 Aligned_cols=167 Identities=29% Similarity=0.475 Sum_probs=147.4
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEE
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFV 156 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv 156 (679)
+++++++ +|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|.+... ..++.++|+
T Consensus 8 ~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (182)
T cd03215 8 RGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGKPVTRRSPRDAIRAGIAYV 80 (182)
T ss_pred eccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCccCHHHHHhCCeEEe
Confidence 4444555 89999999999999999999999999999999999886 37999999976432 235689999
Q ss_pred ecCC---CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 157 TQDD---ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 157 ~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
+|++ .+++.+|++||+.+... ||||||||++||+||+
T Consensus 81 ~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 81 PEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred cCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHc
Confidence 9984 57888999999976310 8999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999877999999999964 58889999999999974
No 267
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-39 Score=323.53 Aligned_cols=194 Identities=30% Similarity=0.467 Sum_probs=170.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--------ccccCcEEEEecCCCCCCCCC
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------KHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------~~~~~~i~yv~Q~~~l~~~lT 167 (679)
++++..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||.... ...+|++||||||-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 677887775799999999999999999999999985 678888875421 124688999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|+.||.|+.... .....+++.+.||++|..+ +++..|||||||||+|+|||+++|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~-----R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLD-----RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHh-----hCCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999975321 2345678899999999665 56778999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 248 LDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||-..+.+++-.|++|.++ +..|+.+||.+ .|+.+++|+|++|++|++..+|+.+++.+
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999876 89999999995 57999999999999999999999998754
No 268
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.2e-38 Score=375.11 Aligned_cols=200 Identities=29% Similarity=0.417 Sum_probs=169.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+.. ..+|+.+|||+|++.+|+.
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG- 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-
Confidence 46999999999999999999999999999999999999874 799999998753 2568899999999999976
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++.. + ..+.++ +.++++..++ ....||.+|+ ....||||||||++|||||+++|++|
T Consensus 563 TI~eNi~l~~~---~-~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~il 633 (708)
T TIGR01193 563 SILENLLLGAK---E-NVSQDE----IWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVL 633 (708)
T ss_pred HHHHHHhccCC---C-CCCHHH----HHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999987521 1 223332 3334444333 4456888875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+++.+++.|+++ +|+|+|+++|+++ ..+.+|+|++|++|+++..|+.++.++
T Consensus 634 iLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999985 4799999999975 467899999999999999999988754
No 269
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4.1e-38 Score=320.03 Aligned_cols=196 Identities=26% Similarity=0.422 Sum_probs=163.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC--CCCHHHHHHHHh
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP--HLTVRETLVFCS 176 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~--~lTV~E~l~~~~ 176 (679)
+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++.. ..++.++|++|++.+++ .+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPG-KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccch-HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 468899999999999999999999999998763 799999998653 34567999999987643 479999998753
Q ss_pred hhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 005754 177 LLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255 (679)
Q Consensus 177 ~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~ 255 (679)
..... ........+++++++++.+|+++..++. +++||||||||++|||+|+.+|+++||||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 0011223345688899999998765544 45799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 256 i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+.+.|++++++|+|||++||++. ++.++||+++++ +|++++.|++++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 99999999878999999999965 588999999999 8999999988775
No 270
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.6e-38 Score=318.95 Aligned_cols=190 Identities=27% Similarity=0.407 Sum_probs=158.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC--C--Cccc-------cc-cCcEEEEec
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN--N--KPTK-------HI-SKRTGFVTQ 158 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g--~--~~~~-------~~-~~~i~yv~Q 158 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++| . +... .. ++.++|++|
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 46999999999999999999999999999999999998863 68999984 2 2211 11 357999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.+++.+||+||+.+..... .....+..+++.++++.+||.+. .+. .+++||||||||++||++|+.+|+
T Consensus 98 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~laral~~~p~ 169 (224)
T TIGR02324 98 FLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPATFSGGEQQRVNIARGFIADYP 169 (224)
T ss_pred ccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999998754321 12333445677889999999753 333 456799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.++||+++.+.
T Consensus 170 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 170 ILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 9999999999999999999999999987899999999995 45678999998763
No 271
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.1e-38 Score=372.66 Aligned_cols=198 Identities=28% Similarity=0.455 Sum_probs=166.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||.+.. ..++++++||+|++.+|+.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g- 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG- 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-
Confidence 56999999999999999999999999999999999999874 799999998754 2467889999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. + ..++ +.+.++++..++ ++..||.+|+. ...||||||||++|||||+++|+|+
T Consensus 570 TIreNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQkQRlalARALl~~p~IL 639 (711)
T TIGR00958 570 SVRENIAYGL----T-DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQKQRIAIARALVRKPRVL 639 (711)
T ss_pred CHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 1222 234455555554 34567888753 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+++.+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.|++++..+
T Consensus 640 ILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 640 ILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999988 22 235899999999975 457899999999999999999988754
No 272
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.2e-38 Score=319.94 Aligned_cols=193 Identities=26% Similarity=0.417 Sum_probs=158.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+||++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 92 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G 92 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c
Confidence 4699999999999999999999999999999999999876 47999999976432 34678999999998776 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN-------TIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+.. .... +++.+.++.+++.+..+ +.. +..+..||||||||++|||+|+.+|+++
T Consensus 93 tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 93 TIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred hHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999986431 1111 23455566666654322 111 2356789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
+|||||+|||+.++..+.+.|+++.+ +.|||++||++.. +. .||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-II-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-Hh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999864 6899999999753 54 599999999999998876
No 273
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-38 Score=359.86 Aligned_cols=200 Identities=24% Similarity=0.315 Sum_probs=168.5
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDIL 162 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l 162 (679)
+|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+... ..++.++|++|++..
T Consensus 12 ~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (490)
T PRK10938 12 RLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNT 88 (490)
T ss_pred EcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcch
Confidence 344456999999999999999999999999999999999998763 7899988865421 234569999998642
Q ss_pred --C------CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 163 --Y------PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 163 --~------~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
+ ..+||+|++.+. .+.+++++++++.+||.+..++.+ ..|||||||||+||+||+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 89 DMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF-----KYLSTGETRKTLLCQALMS 152 (490)
T ss_pred hhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 1 147888877431 123456888999999987666544 5799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|+++..|++++..
T Consensus 153 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 153 EPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999888999999999975 588999999999999999999887653
No 274
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-38 Score=318.77 Aligned_cols=190 Identities=26% Similarity=0.419 Sum_probs=158.9
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYP 164 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~ 164 (679)
++|+++.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++
T Consensus 10 ~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 86 (207)
T PRK13539 10 CVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKP 86 (207)
T ss_pred EEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeCcchhhHhhcEEecCCCcCCC
Confidence 334456799999999999999999999999999999999999876 47999999875321 25667999999998888
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+||+||+.+...... . ..+.++++++.+||.+..+.. ++.||||||||++||++|+.+|+++|||||
T Consensus 87 ~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP 154 (207)
T PRK13539 87 ALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRVALARLLVSNRPIWILDEP 154 (207)
T ss_pred CCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999987543321 1 123478899999997655544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
|+|||+.++..+.+.|++++++|+|||++||++. ++.. |+++.+..
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 155 TAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999888999999999975 3544 88887743
No 275
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.5e-38 Score=332.41 Aligned_cols=199 Identities=24% Similarity=0.338 Sum_probs=165.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
..+|+|+|++|++||+++|+|||||||||||++|+|+++ . +|+|.++|.+.. ..+++.++|++|++.+|+.
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~- 91 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG- 91 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-
Confidence 458999999999999999999999999999999999985 2 699999997653 2456789999999999985
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN------SFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
||+||+.... .... +.+.+.++.+||.+..+...+. .....||||||||++|||||+.+|+||+
T Consensus 92 tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill 161 (275)
T cd03289 92 TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 161 (275)
T ss_pred hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999996321 1122 3456677888887544432221 1244599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||++||+.+...+.+.|+++. +++|||+++|++. .+. .||||++|++|++++.|++++++.
T Consensus 162 lDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 162 LDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 999999999999999999999875 4899999999974 454 599999999999999999998754
No 276
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.1e-38 Score=372.34 Aligned_cols=201 Identities=30% Similarity=0.525 Sum_probs=171.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+..+ .+|+.++||+|++.+|+.
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p---~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~- 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP---TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG- 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-
Confidence 4699999999999999999999999999999999999987 47999999987542 568899999999999985
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. + ..+.++ +.++++..+ +.+..||.+|+. ...||||||||++|||||+++|+++
T Consensus 554 TI~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSgGQrQRlalARall~~p~il 623 (694)
T TIGR03375 554 TLRDNIALGA----P-YADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSGGQRQAVALARALLRDPPIL 623 (694)
T ss_pred hHHHHHhCCC----C-CCCHHH----HHHHHHHcChHHHHHhCcccccceecCC-CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998742 1 123333 333444433 345678888864 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|++++.++.
T Consensus 624 iLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 624 LLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999864 799999999975 4678999999999999999999887653
No 277
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-37 Score=303.82 Aligned_cols=219 Identities=30% Similarity=0.385 Sum_probs=189.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~~l~~~ 165 (679)
++||++||++|++||+.+||||||||||||.++|+|.-.. ..++|+|.++|+++. ++.++.+...+|.|.-+|.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 5799999999999999999999999999999999997543 247899999998863 3567789999999999999
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.|+.+.|..+...+........+..+.+++.++.+++.+ ..++.+. .++|||||||..|+..++.+|++.+||||
T Consensus 96 V~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~ 171 (251)
T COG0396 96 VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEP 171 (251)
T ss_pred eeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHHHHHHHHHhcCCCEEEecCC
Confidence 999999987765432211113456677889999999987 5555554 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC--CeEEEEeCCeEEEecChhhHHHHHHHcCCCCC
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF--DKVLVLSEGRCLYFGKGSEAMSYFESVGFSPS 317 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~--D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~ 317 (679)
-||||..+-+.|-+.++++++.|.+++++||.. ++..+. |+|.+|.+|+|+..|.+ ++.++++.-||.|-
T Consensus 172 DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~~ 243 (251)
T COG0396 172 DSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDWL 243 (251)
T ss_pred CcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHHh
Confidence 999999999999999999999999999999984 577877 99999999999999999 88899999888653
No 278
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.2e-38 Score=338.90 Aligned_cols=213 Identities=28% Similarity=0.395 Sum_probs=190.5
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEE
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTG 154 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~ 154 (679)
..++.+|+|++..+++|||+++++||++||+|.||||||||+|+|.|.++|+ +|+|.++|++.. ...+..||
T Consensus 6 ~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred EEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCc
Confidence 4466788899899999999999999999999999999999999999999974 899999998742 24567899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
+|+|++.|+|++||.||+..+..-......+.++.+++++++.+++||+-..|.+++ .||-||||||.|-++|..
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVEILKALYR 157 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHHHHHHHhc
Confidence 999999999999999999987643222345677888899999999999877777666 599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
+|++|||||||+-|-|...+++++.|++++++|+|||++||... |+.++|||+.+|.+|+++-..+
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999965 6999999999999999986655
No 279
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.5e-38 Score=362.35 Aligned_cols=199 Identities=30% Similarity=0.493 Sum_probs=168.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++| .+|+|.+||.+... .+++.++||+|++.+|+.
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 423 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP---QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR- 423 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-
Confidence 3589999999999999999999999999999999999987 47899999977542 567889999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + ..++++ +.++++.++ +++..||.+|+ ..+.||||||||++|||||+++|+++
T Consensus 424 Ti~~Ni~~~~----~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 424 SIEDNIRVGR----P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred cHHHHHhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998742 1 123332 333444444 34456777775 35679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|++|+++..|+.++..
T Consensus 494 iLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 494 ILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999875 4799999999974 56889999999999999999987764
No 280
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.1e-38 Score=359.35 Aligned_cols=202 Identities=33% Similarity=0.543 Sum_probs=167.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+|+|+|.++|+ +|+|.+||.+... ..++.++||+|++.+|+.
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 406 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG- 406 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-
Confidence 46899999999999999999999999999999999999863 7999999976532 467889999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTS-----IAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|++||+.+.. + ..++++..+ ..++.++.+ .+..|+.+|+ ....||||||||++|||||+++|++++|
T Consensus 407 ti~~Ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 407 TVAENIARFG----E-NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred cHHHHHhccC----C-CCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999997532 1 123332221 123344433 3345666764 4678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.+++.+.+.|+++.++|+|+|+++|+++ ..+.||++++|++|++++.|++++..
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999998767899999999975 45789999999999999999988764
No 281
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.1e-38 Score=324.49 Aligned_cols=191 Identities=28% Similarity=0.470 Sum_probs=156.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 102 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP---QGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-R 102 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-h
Confidence 3589999999999999999999999999999999999876 37899999976432 34567999999998876 5
Q ss_pred CHHHHHHHHhhhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLST---KEKTSIAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
||+||+.+.... ..... ......+++.++.+ |+++..+. .++.|||||||||+||++|+.+|+++||
T Consensus 103 tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llll 174 (226)
T cd03248 103 SLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQKQRVAIARALIRNPQVLIL 174 (226)
T ss_pred hHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999874321 11001 11112356778888 67654443 3567999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
||||+|||+.++..+.+.|+++++ +.|||++||++. ++. .||++++|++|++
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 175 DEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred eCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999999999999999999875 689999999976 454 5999999999874
No 282
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-38 Score=314.63 Aligned_cols=184 Identities=22% Similarity=0.336 Sum_probs=155.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILY 163 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~ 163 (679)
+++++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++... ..++.++|++|+..++
T Consensus 10 ~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 86 (200)
T PRK13540 10 DYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQSIKKDLCTYQKQLCFVGHRSGIN 86 (200)
T ss_pred EeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEEECCCccccCHHHHHhheEEeccccccC
Confidence 34456799999999999999999999999999999999999886 47999999986532 3467899999999888
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.+.... . .. ...++++++.+++.+..++++ ..||||||||++|||+|+.+|++|+|||
T Consensus 87 ~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 87 PYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred cCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 899999999875421 1 11 236788999999987555444 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKV 288 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v 288 (679)
||+|||+.++..+.+.|++++++|.|||++||++. ....+|..
T Consensus 154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~ 196 (200)
T PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYE 196 (200)
T ss_pred CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchh
Confidence 99999999999999999999878999999999964 34557654
No 283
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.3e-38 Score=361.37 Aligned_cols=200 Identities=29% Similarity=0.475 Sum_probs=170.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+|+||||||||+|+|+|+++| .+|+|.+||.+.. ..+++.++||+|++.+|+.
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~---~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~- 420 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP---DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND- 420 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-
Confidence 4689999999999999999999999999999999999986 3799999997653 2467789999999999876
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. +...++ ++++++++.+|+ ++..||.+|+. .+.||||||||++|||+++++|+++
T Consensus 421 Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~il 491 (571)
T TIGR02203 421 TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPIL 491 (571)
T ss_pred cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998652 112233 334555565554 34567888864 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||||+||+.+++.+++.|+++. +++|+|++||++. ..+.||+|++|++|+++..|+.++..
T Consensus 492 lLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 492 ILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999885 4799999999974 57889999999999999999988864
No 284
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.1e-38 Score=308.94 Aligned_cols=160 Identities=33% Similarity=0.557 Sum_probs=143.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCCCCCCH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~~~lTV 168 (679)
.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 699999999999999999999999999999999999876 47899999976432 34667999999988876 699
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
+||+ +..||||||||++|||+|+.+|++++|||||+||
T Consensus 92 ~~~i------------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~L 129 (178)
T cd03247 92 RNNL------------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred HHhh------------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 9886 2359999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 249 DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|+.+++.+++.|+++. ++.|||++||++. .+ ..+|++++|++|++++.|
T Consensus 130 D~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 130 DPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 9999999999999995 5899999999975 35 579999999999998764
No 285
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.3e-38 Score=307.40 Aligned_cols=155 Identities=34% Similarity=0.640 Sum_probs=140.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+++|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.+... ..++.++|++|++.+++.
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~- 90 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG- 90 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCccccC-
Confidence 46999999999999999999999999999999999998863 7899999976432 346689999999988874
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
||+||+ ||||||||++||++|+.+|+++||||||+
T Consensus 91 tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~ 125 (173)
T cd03246 91 SIAENI---------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNS 125 (173)
T ss_pred cHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 999886 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
|||+.++..+.+.|++++++|+|||++||++. .+ +.||++++|++|++
T Consensus 126 ~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 126 HLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 99999999999999999878999999999975 45 68999999999974
No 286
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=352.65 Aligned_cols=205 Identities=23% Similarity=0.396 Sum_probs=172.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCC---CCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDD---ILY 163 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~---~l~ 163 (679)
.+|+|+||+|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+... ..++.+|||+|++ .++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 4799999999999999999999999999999999998763 7999999865421 2356799999995 578
Q ss_pred CCCCHHHHHHHHhhhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 164 PHLTVRETLVFCSLLRLP---RTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+||.||+.+....... .....++.+++++++++.+||. +..++. ++.|||||||||+||++|+.+|++|
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqrv~lA~al~~~p~ll 417 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLLSGGNQQKVAIARGLMTRPKVL 417 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 899999999874321100 0122334456788999999995 555554 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999888999999999965 68899999999999999999987664
No 287
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=353.36 Aligned_cols=204 Identities=19% Similarity=0.319 Sum_probs=172.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCC---CCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDD---ILY 163 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~---~l~ 163 (679)
.+++|+|++|++||+++|+||||||||||||+|+|+.+| .+|+|.++|++.. ...++.++|++|++ .++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR---TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC---CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 589999999999999999999999999999999999876 4799999986542 12356799999996 488
Q ss_pred CCCCHHHHHHHHhhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 164 PHLTVRETLVFCSLLRL-PRT--LSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+|+.||+.+...... +.. ......++.++++++.+|+. +..++.++ .|||||||||+||++|+.+|++|
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEE
Confidence 89999999987432110 000 12233345688999999994 55665554 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|++++.|++++
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999988999999999965 5889999999999999999998765
No 288
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=343.17 Aligned_cols=200 Identities=33% Similarity=0.505 Sum_probs=172.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
.++|+|+|+++++||.+||+|+||||||||+..|.|-++|+ +|+|..||.+.. +.+++.+++++|...+|.+
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~- 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG- 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-
Confidence 46999999999999999999999999999999999998864 899999998753 2367789999999999876
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|+++||..+. | +.+.+ .+.++++++||++ ..||.+|+ ..+.||||||||++|||+|++|.+++
T Consensus 427 Tlr~NL~lA~----~-~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~ 496 (573)
T COG4987 427 TLRDNLRLAN----P-DASDE----ELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLW 496 (573)
T ss_pred HHHHHHhhcC----C-CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeE
Confidence 9999998753 1 23333 3556677777764 45667774 57789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||.|||+.+++++++.|.+-++ |+|+|++||+... .+.||||++|++|++++.|++++.+.
T Consensus 497 lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 497 LLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999998765 8999999999764 68899999999999999999988764
No 289
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.1e-38 Score=308.84 Aligned_cols=171 Identities=35% Similarity=0.595 Sum_probs=145.0
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQD 159 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~ 159 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|
T Consensus 5 l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q- 80 (180)
T cd03214 5 LSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQ- 80 (180)
T ss_pred EEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHH-
Confidence 34455556799999999999999999999999999999999999876 47899999875421 23345777777
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+++.+||.+..++ .++.||||||||++|||+|+.+|+++
T Consensus 81 ------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 81 ------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred ------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 5566677654443 34579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+++|++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999876 899999999975 577899999999999998654
No 290
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.8e-37 Score=330.75 Aligned_cols=186 Identities=28% Similarity=0.477 Sum_probs=161.8
Q ss_pred EECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCH
Q 005754 109 ILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLST 186 (679)
Q Consensus 109 llGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~ 186 (679)
|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.++|++|++.+++.+||+||+.|....+ ..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p---~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP---DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 6899999999999999999986 47999999976532 23567999999999999999999999875432 1234
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005754 187 KEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266 (679)
Q Consensus 187 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 266 (679)
.+.+++++++++.+||.+..++ .++.|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 5556778999999999876554 45579999999999999999999999999999999999999999999999765
Q ss_pred -CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 267 -GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 267 -g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||++||++. ++.++||++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999965 588999999999999999999998874
No 291
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-37 Score=311.32 Aligned_cols=183 Identities=24% Similarity=0.355 Sum_probs=152.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 96 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-G 96 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-c
Confidence 3689999999999999999999999999999999999876 47999999976421 34568999999998887 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
||+||+.+.. ....+ .+.+.++ + +..++.||||||||++|||+|+.+|+++||||||+
T Consensus 97 tv~~~l~~~~------~~~~~----~~~~~l~---~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 154 (207)
T cd03369 97 TIRSNLDPFD------EYSDE----EIYGALR---V---------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATA 154 (207)
T ss_pred cHHHHhcccC------CCCHH----HHHHHhh---c---------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 9999996521 11211 1233333 2 23456799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||+.++..+.+.|+++. +|+|+|++||++.. +. .+|++++|++|+++..|++
T Consensus 155 ~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 155 SIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 999999999999999985 48999999999753 54 4999999999999988763
No 292
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=7.8e-38 Score=324.71 Aligned_cols=199 Identities=24% Similarity=0.343 Sum_probs=158.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~ 109 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-G 109 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-c
Confidence 4699999999999999999999999999999999999876 47999999976532 34678999999998887 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKT-----SIAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.... ........ ..+++.++.+ |++. .++ ...+.||||||||++|||+|+.+|++|
T Consensus 110 tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~----~~~-~~~~~LS~G~~qrl~laral~~~p~ll 178 (257)
T cd03288 110 SIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDA----VVT-EGGENFSVGQRQLFCLARAFVRKSSIL 178 (257)
T ss_pred HHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCc----Eec-cCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999985321 01111111 1122333333 3332 222 345689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||+|||+.++..+.+.|+++. ++.|||++||++.. +. .||++++|++|+++..|+++++.+
T Consensus 179 llDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 179 IMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999975 48999999999764 54 499999999999999999877643
No 293
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2e-37 Score=351.64 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=169.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCC---CCCC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDD---ILYP 164 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~---~l~~ 164 (679)
+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+... ..++.++|++|++ .+++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 699999999999999999999999999999999998763 7999999875422 1345799999984 4888
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
.+|+.||+......+..........++.++++++.+||. +..++++ +.|||||||||+||++|+.+|++|||||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 899999986421111111111223345688999999996 5555544 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
||+|||+.+++.+.+.|++++++|.|||++|||+. ++.++||++++|++|+++..|++++
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999888999999999975 5889999999999999999887754
No 294
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.4e-37 Score=355.49 Aligned_cols=200 Identities=28% Similarity=0.450 Sum_probs=168.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||.++|+||||||||||+++|+|+++| .+|+|.+||.+... .+++.++||+|++.+|+.
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 403 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV---SEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD- 403 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-
Confidence 4689999999999999999999999999999999999986 47999999986532 457789999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + ..+.++ ++++++..+ +++..||.+|+. ...||||||||++|||||+++|+++
T Consensus 404 ti~~Ni~~~~----~-~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~qRi~lARall~~~~il 473 (569)
T PRK10789 404 TVANNIALGR----P-DATQQE----IEHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQRISIARALLLNAEIL 473 (569)
T ss_pred cHHHHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998642 1 123332 333444443 345567888753 6679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||++||+.+++.+.+.|+++. +|+|+|++||+++ ..+.+|++++|++|+++..|+.++..+
T Consensus 474 llDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 474 ILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999985 5899999999974 457799999999999999999887643
No 295
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.9e-37 Score=355.57 Aligned_cols=199 Identities=29% Similarity=0.490 Sum_probs=167.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|++++|||.++|+||||||||||+|+|+|+++| .+|+|.+||.+.. ..+++.++|+||++.+|+.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p---~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~- 428 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP---QSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA- 428 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-
Confidence 5699999999999999999999999999999999999986 3789999997653 2457789999999999875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + ..++ ++++++++..|+. +..|+.+|+ ....||||||||++||||++++|+++
T Consensus 429 Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~il 498 (576)
T TIGR02204 429 SVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPIL 498 (576)
T ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeE
Confidence 9999998742 1 1222 2344555555543 345677765 35679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||||+||+.+++.+++.|+++. +++|+|++||++. ..+.+|+++.|++|+++..|++++..
T Consensus 499 ilDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 499 LLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 9999999999999999999999985 4899999999974 46789999999999999999988753
No 296
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-37 Score=310.38 Aligned_cols=178 Identities=29% Similarity=0.468 Sum_probs=143.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++| +++|++|++.+++ .|++||
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~---~~G~i~~~g---------~i~~~~q~~~l~~-~t~~en 85 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK---LSGSVSVPG---------SIAYVSQEPWIQN-GTIREN 85 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC---CCCeEEEcC---------EEEEEecCchhcc-CcHHHH
Confidence 699999999999999999999999999999999999876 478999988 5999999998885 699999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
+.+... .... ...+.++.+++.+. .++.. +..+..||||||||++|||+|+.+|++++||||
T Consensus 86 l~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 86 ILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hccCCC------cCHH----HHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 987422 1111 12222333333211 12222 234678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 245 TSGLDSTAAYRLVS-TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 245 tsgLD~~~~~~i~~-~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|+|||+.+++.+.+ +++++.++|+|||++||++. .+.. +|++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999998 56777666899999999975 4555 99999999985
No 297
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2e-37 Score=364.08 Aligned_cols=200 Identities=29% Similarity=0.537 Sum_probs=168.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||.++|+|+||||||||+|+|+|+++|+ +|+|.+||.+..+ .+++.++||+|++.+|+.
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~- 545 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR- 545 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-
Confidence 46899999999999999999999999999999999999864 7999999987542 567889999999999875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + ..+.++ +.++++..+ +++..||.+++. ...||||||||++|||||+++|++|
T Consensus 546 ti~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~~-g~~LSgGq~qri~lARall~~~~il 615 (694)
T TIGR01846 546 SIRDNIALCN----P-GAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGEK-GANLSGGQRQRIAIARALVGNPRIL 615 (694)
T ss_pred hHHHHHhcCC----C-CCCHHH----HHHHHHHcChHHHHHhCcCccCcEecCC-CCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999997642 1 223332 233333333 334567888754 6789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||++++|++|++++.|+.++..+
T Consensus 616 ilDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 616 IFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999985 5899999999975 346799999999999999999888653
No 298
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=317.52 Aligned_cols=234 Identities=26% Similarity=0.414 Sum_probs=201.4
Q ss_pred CCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHH
Q 005754 41 CYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120 (679)
Q Consensus 41 ~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTL 120 (679)
..|+-++.+|+....+.+..- ++ .......++++||+++++||-++|+|.||||||||
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~---------~~-------------r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTl 329 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGF---------LR-------------RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTL 329 (534)
T ss_pred CCCceEEecceEEEEecCCcc---------cc-------------ccchheEEeccceeEecCCCeEEEEecCCCCcchH
Confidence 456678999998887765221 10 11234579999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHH
Q 005754 121 LNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTS 191 (679)
Q Consensus 121 L~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~ 191 (679)
=.+|.+++++ +|+|.++|++... -+|+++-.||||| .+-|.+||.|-+.-+.....| ..++.++++
T Consensus 330 G~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~ 404 (534)
T COG4172 330 GLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQ 404 (534)
T ss_pred HHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHH
Confidence 9999999874 5999999988642 2467899999998 588999999999887766543 467889999
Q ss_pred HHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEE
Q 005754 192 IAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTI 270 (679)
Q Consensus 192 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~ti 270 (679)
++.+.|+.+||+.. ..++++++.|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-
T Consensus 405 rv~~aL~EVGLDp~----~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsY 480 (534)
T COG4172 405 RVIEALEEVGLDPA----TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSY 480 (534)
T ss_pred HHHHHHHHcCCChh----HhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeE
Confidence 99999999999863 33688999999999999999999999999999999999999999999999999976 49999
Q ss_pred EEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 271 i~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
++++||.. -+..+||+|++|++|+||+.|+.++++
T Consensus 481 LFISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 481 LFISHDLA-VVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred EEEeccHH-HHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 99999975 588999999999999999999998874
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=9.7e-37 Score=351.29 Aligned_cols=202 Identities=28% Similarity=0.406 Sum_probs=165.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+++|+|.++| .+|+|.+||.+.. ..+++.++||+|++.+++ .
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ 423 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP---TVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-R 423 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC---CCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-c
Confidence 3589999999999999999999999999999999999986 4799999997643 246788999999999887 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHH-----HHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEA-----VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~-----~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|++||+.++. + ..++++..+..+. .+. .+.+..|+.+|+ ....||||||||++|||||+++|++++|
T Consensus 424 ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ilil 495 (585)
T TIGR01192 424 SIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVL 495 (585)
T ss_pred cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999998742 1 1233333222221 121 233445666765 4667999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||+|||+.+++.+.+.|+++. +++|+|++||+++. .+.+|++++|++|+++..|+.++..+
T Consensus 496 DEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 496 DEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred ECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999999999884 48999999999753 46799999999999999999887643
No 300
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-37 Score=385.98 Aligned_cols=220 Identities=26% Similarity=0.414 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH
Q 005754 45 TLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL 124 (679)
Q Consensus 45 ~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L 124 (679)
.++|+||+|+.+.+ .++++|+|+||+|++|+.+||+||||||||||+++|
T Consensus 1165 ~I~f~nVsF~Y~~~------------------------------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL 1214 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR------------------------------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214 (1466)
T ss_pred eEEEEEEEEECCCC------------------------------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 58999999987521 124699999999999999999999999999999999
Q ss_pred hcCcCCCC---------------------------------------------------CeeeEEEECCCCcc----ccc
Q 005754 125 AGRLHQGH---------------------------------------------------GLTGTILTNNNKPT----KHI 149 (679)
Q Consensus 125 ~G~~~~~~---------------------------------------------------~~~G~i~~~g~~~~----~~~ 149 (679)
.|+++|+. +.+|+|.+||.+.. +.+
T Consensus 1215 ~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~l 1294 (1466)
T PTZ00265 1215 MRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDL 1294 (1466)
T ss_pred HHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHH
Confidence 99998720 14899999998763 357
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCcccCHHH
Q 005754 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-------GLTKCENTIIGNSFIRGISGGE 222 (679)
Q Consensus 150 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGe 222 (679)
|+.+|||+|++.+|+ .|++|||.++. + ..+.++ ++++++.. .|++..||.+|+ ....|||||
T Consensus 1295 R~~i~~V~Qep~LF~-gTIreNI~~g~----~-~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQ 1363 (1466)
T PTZ00265 1295 RNLFSIVSQEPMLFN-MSIYENIKFGK----E-DATRED----VKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQ 1363 (1466)
T ss_pred HhhccEeCCCCcccc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHH
Confidence 889999999999996 59999999862 1 233333 33333332 456678999995 466799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEeC----CeEE
Q 005754 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSE----GRCL 297 (679)
Q Consensus 223 rqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~~----G~iv 297 (679)
|||++|||||+++|+|||||||||+||+.+++.|.+.|+++. .+++|+|+++|+++ ..+.||+|++|++ |+++
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEE
Confidence 999999999999999999999999999999999999999986 36899999999975 4678999999999 9955
Q ss_pred -EecChhhHHH
Q 005754 298 -YFGKGSEAMS 307 (679)
Q Consensus 298 -~~G~~~~~~~ 307 (679)
+.|+.+++++
T Consensus 1442 ~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1442 QAHGTHEELLS 1452 (1466)
T ss_pred EEecCHHHHHh
Confidence 8999988753
No 301
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-37 Score=361.32 Aligned_cols=220 Identities=28% Similarity=0.467 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH
Q 005754 45 TLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL 124 (679)
Q Consensus 45 ~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L 124 (679)
+++++|++++.+.+ .+.+||+|+|++|++|+-+||+|||||||||.+-+|
T Consensus 987 ~I~~~~V~F~YPsR------------------------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR------------------------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred EEEEeeeEeeCCCC------------------------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 48999999988732 246799999999999999999999999999999999
Q ss_pred hcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH-HH-
Q 005754 125 AGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV-MA- 198 (679)
Q Consensus 125 ~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~-l~- 198 (679)
-..+.| ..|.|.+||.+... .+|+++|.|.|+|.||.. |++|||.|+. .. .+.++..+.++.. +.
T Consensus 1037 eRfYdp---~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~----~~-vs~~eIi~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1037 ERFYDP---DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS----EE-VSEEEIIEAAKLANAHN 1107 (1228)
T ss_pred HHhcCC---CCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC----CC-CCHHHHHHHHHHhhhHH
Confidence 999986 47999999988643 578999999999999975 9999999982 11 3444443332211 11
Q ss_pred -HcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 199 -ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 199 -~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
..+|++..||.+|++ ..+||||||||++||||+++||+||||||.||+||+++.+.+.+.|.+.. .|+|.|++.|++
T Consensus 1108 FI~sLP~GyDT~vGer-G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1108 FISSLPQGYDTRVGER-GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRL 1185 (1228)
T ss_pred HHhcCcCcccCccCcc-cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecch
Confidence 147889999999964 56799999999999999999999999999999999999999999999875 489999999998
Q ss_pred cHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 278 SSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 278 ~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+. .+.||.|.++++|+|++.|+.+++++
T Consensus 1186 ST--IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1186 ST--IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hh--hhcCCEEEEEECCEEEecccHHHHHh
Confidence 64 68899999999999999999999875
No 302
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.3e-37 Score=308.82 Aligned_cols=189 Identities=24% Similarity=0.363 Sum_probs=151.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~~ 161 (679)
++++|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.+... ..++.++|++|++.
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 89 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW 89 (218)
T ss_pred CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccchhhcceEEEEcCCCc
Confidence 357999999999999999999999999999999999998763 7999999875421 23467999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN-------TIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
++ ..|++||+.+... ...+ ..+++++.+++.+..+ +.. +..+..||||||||++||++|+.
T Consensus 90 ~~-~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 90 LL-NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEI-GERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred cc-cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCc-ccCCCcCCHHHHHHHHHHHHHhh
Confidence 87 5799999976421 1111 2234455556543221 112 23467899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVS--TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
+|+++||||||+|||+.++..+++ .++.+.++|.|||++||++.. + ..+|++++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 999999999999999999999998 677776678999999999753 5 5799999999884
No 303
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.9e-38 Score=292.03 Aligned_cols=195 Identities=29% Similarity=0.474 Sum_probs=170.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILY 163 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~ 163 (679)
-++.+||+++||.+++||..+|.||||||||||||+++.+.+|+ +|++++.|++.+ +.+|.+|+|+.|.+.+|
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 35678999999999999999999999999999999999999874 799999998864 36788999999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+. ||++|+.|.-..|..+ ..+++..+.|+++++.+. +.++.+..||||||||++|+|.|..-|+||+|||
T Consensus 90 g~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~----~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GD-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDS----ILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred cc-chhhccccchHHhccC-----CChHHHHHHHHHcCCchh----hhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 87 9999999976665322 234567788999999864 3344566799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
|||+||+.+++.|-++|.++. .+++.++.+||++. +..+.+|+++-+..|++
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 999999999999999999986 57999999999975 56789999999999876
No 304
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-37 Score=299.99 Aligned_cols=152 Identities=38% Similarity=0.673 Sum_probs=136.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lT 167 (679)
.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|++.++|.+... ..++.++|++|++.+++ .|
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GT 91 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-ch
Confidence 699999999999999999999999999999999999886 37899999976432 34567999999988776 58
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
+.||+ ||||||||++||++|+.+|++++|||||+|
T Consensus 92 ~~e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g 126 (171)
T cd03228 92 IRENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126 (171)
T ss_pred HHHHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 88876 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
||+.++..+.+.|+++.+ ++|||++||++. .+.. ||++++|++|+
T Consensus 127 LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 127 LDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 999999999999999964 799999999975 4655 99999999885
No 305
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.1e-37 Score=329.63 Aligned_cols=207 Identities=31% Similarity=0.515 Sum_probs=179.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~ 165 (679)
++++|+|+||.+++||.++|+||||||||||.|+|.|..+| .+|.|.+||.+.. +.+-+.|||.||+-.||+.
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G 424 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEecchhhhcCCHHHhccccCcCcccceecCC
Confidence 47899999999999999999999999999999999999986 4899999997753 3567899999999999987
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHH-----HHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKE-----KTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
||.|||.= ...+.+.+. +.+.+.|++ +.+.+..||.+|+ ...+||||||||+++||||..+|.+++
T Consensus 425 -TIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 425 -TIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred -cHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence 99999952 221222221 222344444 4568889999996 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
||||-|+||.+....+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++..+|+.+|++....
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 99999999999999999999999999999999999985 689999999999999999999999988764
No 306
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.2e-36 Score=294.43 Aligned_cols=151 Identities=33% Similarity=0.513 Sum_probs=134.7
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQD 159 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~ 159 (679)
+++|+++++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|
T Consensus 7 ~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q- 82 (163)
T cd03216 7 TKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDARRAGIAMVYQ- 82 (163)
T ss_pred EEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHHHhcCeEEEEe-
Confidence 3344456799999999999999999999999999999999999886 47999999876432 23456888888
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||||||||++|||+|+.+|+++
T Consensus 83 ----------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 83 ----------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred ----------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
+|||||+|||+.+++.+.+.|++++++|.|||++||++. ++.+.+|++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999877999999999964 5778999999999999875
No 307
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2e-36 Score=305.49 Aligned_cols=195 Identities=21% Similarity=0.252 Sum_probs=158.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEE-ECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-TNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~-~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
++|+|||++|++||+++|+||||||||||+|+|+|+.+|+ +|+|. ++|... .+.+++.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~---------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL---------PLGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee---------ccccccccCCcCcHHH
Confidence 3799999999999999999999999999999999998764 67886 665422 1234567889999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+...... ...++. .+.+.+.++|+...++.+ +.||||||||++||++|+.+|+++||||||++||+
T Consensus 69 nl~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 9998654321 222222 233445667776665554 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHH
Q 005754 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES 311 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 311 (679)
.++..+.+.|.+..+ ++|+|++||++. .+.++||++++|++|++++.|+.+++.++++.
T Consensus 138 ~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 138 ATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999999998865443 468999999975 57789999999999999999999998877653
No 308
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-36 Score=302.51 Aligned_cols=182 Identities=23% Similarity=0.276 Sum_probs=150.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
|+++.+++ +|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.....++.++|++|++.+++.+|
T Consensus 11 ~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~t 86 (195)
T PRK13541 11 IEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMT 86 (195)
T ss_pred ECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCcccChhhhhhEEeccCCcCCCccCC
Confidence 33344555 9999999999999999999999999999999876 4799999998654322456899999988888899
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|+||+.+..... . ..++++++++.+++.+..++. ++.||||||||++||++|+.+|++++|||||+|
T Consensus 87 v~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~ 153 (195)
T PRK13541 87 VFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARLIACQSDLWLLDEVETN 153 (195)
T ss_pred HHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999998754321 0 134567888999998765544 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeE
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKV 288 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v 288 (679)
||+.+++.+.+.|++..++|+|||++||++.. ...+|-+
T Consensus 154 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~ 192 (195)
T PRK13541 154 LSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL 192 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence 99999999999998877779999999999753 3446654
No 309
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-37 Score=305.91 Aligned_cols=214 Identities=29% Similarity=0.458 Sum_probs=177.8
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i 153 (679)
+..++++.++++|+||+|+|++|++||-.+|+|||||||||||++++|...|. +|.+.+.|+... .++|++|
T Consensus 32 i~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred EEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchHHHHHHh
Confidence 34455555677899999999999999999999999999999999999998863 677777776532 4678999
Q ss_pred EEEecC--CCCCCCCCHHHHHHHH--hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH
Q 005754 154 GFVTQD--DILYPHLTVRETLVFC--SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA 229 (679)
Q Consensus 154 ~yv~Q~--~~l~~~lTV~E~l~~~--~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 229 (679)
|+|.-. ..+.+..+|+|-+.-+ +..........++..+++..+++.+|+.+.+|+.++ .||-||||||.||
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-----~LS~Ge~rrvLia 183 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIA 183 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh-----hcCHhHHHHHHHH
Confidence 999643 3455677888877532 222222212345667889999999999998887766 5999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 230 HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR--GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 230 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|||+.+|++||||||++|||...++.+++.|.+++.. +.++|++||++. ++-..+++++++++|+++++|.
T Consensus 184 RALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 184 RALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999865 889999999965 6899999999999999999874
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=344.93 Aligned_cols=205 Identities=25% Similarity=0.440 Sum_probs=167.1
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|. +.++|++|++.+++
T Consensus 8 s~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~-------~~i~~~~q~~~~~~ 77 (530)
T PRK15064 8 TMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN-------ERLGKLRQDQFAFE 77 (530)
T ss_pred EEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC-------CEEEEEeccCCcCC
Confidence 33444567999999999999999999999999999999999998863 789998863 35999999999999
Q ss_pred CCCHHHHHHHHhh-h-----------cCCCC-----------------CCHHHHHHHHHHHHHHcCCCccccccccCccC
Q 005754 165 HLTVRETLVFCSL-L-----------RLPRT-----------------LSTKEKTSIAEAVMAELGLTKCENTIIGNSFI 215 (679)
Q Consensus 165 ~lTV~E~l~~~~~-~-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 215 (679)
.+||+|++.++.. . ..+.. ....+.+++++++++.+||.+..+ ++.+
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~~~~ 153 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH----YGLM 153 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh----cCch
Confidence 9999999986421 0 00000 000122456788999999975322 1234
Q ss_pred cccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||++. .+.++||++++|++|+
T Consensus 154 ~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~g~ 229 (530)
T PRK15064 154 SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDYGE 229 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeCCE
Confidence 57999999999999999999999999999999999999999999864 5899999999965 5889999999999999
Q ss_pred E-EEecChhhHHH
Q 005754 296 C-LYFGKGSEAMS 307 (679)
Q Consensus 296 i-v~~G~~~~~~~ 307 (679)
+ ++.|++++..+
T Consensus 230 i~~~~g~~~~~~~ 242 (530)
T PRK15064 230 LRVYPGNYDEYMT 242 (530)
T ss_pred EEEecCCHHHHHH
Confidence 9 58898877543
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.9e-36 Score=292.59 Aligned_cols=150 Identities=35% Similarity=0.543 Sum_probs=134.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|. +.++|++|++.++ ..|++|
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~-------~~i~~~~q~~~~~-~~tv~~ 82 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEG-------EDLLFLPQRPYLP-LGTLRE 82 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCC-------ceEEEECCCCccc-cccHHH
Confidence 5699999999999999999999999999999999999876 3789998763 5799999998765 579999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+. .++.||||||||++|||+|+.+|++++|||||+|||+
T Consensus 83 nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 83 QLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred Hhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 98642 1246999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
.++..+.+.|+++ +.|+|++||++. ....+|++++|++|
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 9999999999986 689999999974 45799999999875
No 312
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1e-35 Score=306.59 Aligned_cols=188 Identities=23% Similarity=0.288 Sum_probs=153.5
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 93 ILNGITGMVS-----PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 93 iL~~vs~~i~-----~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
.++|++++++ +||+++|+|||||||||||++|+|+.+|+ +|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~--------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD--------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc--------eEEEecccccCCCCCC
Confidence 5566666665 79999999999999999999999998864 789998874 5899999988777899
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|+|++.+...... . .....+++++.++|.+..++. ++.|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432110 1 122357789999998765544 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE--EecChhh
Q 005754 248 LDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL--YFGKGSE 304 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv--~~G~~~~ 304 (679)
||+.++..+.+.|+++++ .|+|||++||++. .+..+||++++|+++..+ ..+++.+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999999976 4899999999965 577899999999764433 3445544
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.8e-36 Score=313.46 Aligned_cols=189 Identities=29% Similarity=0.454 Sum_probs=152.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++| .++|++|++.+++. ||+|
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g---------~i~yv~q~~~l~~~-tv~e 116 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG---------RISFSSQFSWIMPG-TIKE 116 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------EEEEEeCccccccc-CHHH
Confidence 45899999999999999999999999999999999998863 78999887 38999999988875 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
|+.+.... ... .+.+.++.+++.+. .++.++ ..+..||||||||++||++|+.+|+++||||
T Consensus 117 nl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 117 NIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred Hhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99864211 111 12223333343321 122232 2456899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTL-GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L-~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 186 Pt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 186 PFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999865 5554 47999999999754 4 689999999999999999988764
No 314
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=339.42 Aligned_cols=213 Identities=23% Similarity=0.352 Sum_probs=170.7
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i 153 (679)
+..++++++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+... ..++.+
T Consensus 251 i~~~~l~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 251 LEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK---SAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEeCcccc--cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC---CccEEEECCEECCCCCHHHHHHCCC
Confidence 344455554 24699999999999999999999999999999999999876 37999999865432 235569
Q ss_pred EEEecCC---CCCCCCCHHHHHHHHhh--h-cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHH
Q 005754 154 GFVTQDD---ILYPHLTVRETLVFCSL--L-RLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRV 226 (679)
Q Consensus 154 ~yv~Q~~---~l~~~lTV~E~l~~~~~--~-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv 226 (679)
+|++|+. .+++.+|+.+|..+... . ......+....++.++++++.+++. +..++ .+.+|||||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv 400 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGSLSGGNQQKV 400 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----ccccCCcHHHHHH
Confidence 9999985 47888998877433210 0 0001112233456678899999995 34444 4557999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 227 ~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|+++..++.
T Consensus 401 ~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999888999999999965 58899999999999999977755
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.7e-36 Score=342.98 Aligned_cols=196 Identities=29% Similarity=0.408 Sum_probs=162.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++.+|+|+||+|++||+++|+|||||||||||++|+|+++| .+|+|.+++. ..+|||+|++.+++.+||.
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p---~~G~i~~~~~-------~~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE---FEGEARPAPG-------IKVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEecCC-------CEEEEEecCCCCCCCCcHH
Confidence 46799999999999999999999999999999999999886 3789988642 4699999999999999999
Q ss_pred HHHHHHhh-hc------------CCCCCC--------------------HHHHHHHHHHHHHHcCCCccccccccCccCc
Q 005754 170 ETLVFCSL-LR------------LPRTLS--------------------TKEKTSIAEAVMAELGLTKCENTIIGNSFIR 216 (679)
Q Consensus 170 E~l~~~~~-~~------------~~~~~~--------------------~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 216 (679)
||+.+... .+ ...... ..+..++++++++.+||.. .+.. ++
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~-----~~ 162 (556)
T PRK11819 89 ENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAK-----VT 162 (556)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCc-----hh
Confidence 99987421 00 000000 0012456788999999953 4443 45
Q ss_pred ccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||++. .+.++||++++|++|++
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDRGRG 238 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeCCEE
Confidence 799999999999999999999999999999999999999999999873 59999999965 58889999999999998
Q ss_pred E-EecChhhH
Q 005754 297 L-YFGKGSEA 305 (679)
Q Consensus 297 v-~~G~~~~~ 305 (679)
+ +.|+.++.
T Consensus 239 ~~~~g~~~~~ 248 (556)
T PRK11819 239 IPWEGNYSSW 248 (556)
T ss_pred EEecCCHHHH
Confidence 6 78877764
No 316
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=8.8e-36 Score=346.47 Aligned_cols=203 Identities=29% Similarity=0.437 Sum_probs=176.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c----ccCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H----ISKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~----~~~~i~yv~Q~~~l 162 (679)
+.+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|++.++|++... . .++.++|++|++.+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l 97 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP---TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHL 97 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCccc
Confidence 5699999999999999999999999999999999999886 47999999976532 1 14679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|+.||+.+..... .....+.++++.++++.+||.+..|+.. +.||||||||++|||+|+.+|++++||
T Consensus 98 ~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq~qrv~LAraL~~~P~lLllD 169 (648)
T PRK10535 98 LSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQQQRVSIARALMNGGQVILAD 169 (648)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999998754321 1234556677899999999987666544 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+|||+.+++.+.+.|++++++|+|+|++||++. ..+.||++++|++|++++.|++++..
T Consensus 170 EP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 170 EPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999878999999999975 34679999999999999999998764
No 317
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.6e-36 Score=346.04 Aligned_cols=172 Identities=34% Similarity=0.550 Sum_probs=145.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEecCCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~Q~~~l~~~lT 167 (679)
+++|+|+|+++++||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+.. +.+++.++||+|++.+|+. |
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-T 423 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-T 423 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-c
Confidence 34899999999999999999999999999999999999874 799999997653 3567789999999999986 9
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
++|||.++. + ..+++ +++++++..++ ++..||.+|+ ....||||||||++|||||+++|++++
T Consensus 424 I~eNI~~g~----~-~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 424 VRDNLRLGR----P-DATDE----ELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred HHHHHhccC----C-CCCHH----HHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998752 1 12333 34445555444 4567899986 456799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
||||||+||+.+++.+.+.|+++. +++|+|+++|++
T Consensus 494 LDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 494 LDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999864 479999999984
No 318
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.5e-36 Score=340.06 Aligned_cols=214 Identities=23% Similarity=0.384 Sum_probs=169.9
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCc
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKR 152 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~ 152 (679)
+...++++++|+++.+|+|+||++++||+++|+||||||||||+|+|+|..++ ..+|+|.++|++... ..++.
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ--GYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc--ccCCeEEEecccCCCCCCHHHHHhh
Confidence 35566777778777899999999999999999999999999999999997643 137999999875321 23567
Q ss_pred EEEEecCCCCCC--CCCHHHHHHHHhhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHH
Q 005754 153 TGFVTQDDILYP--HLTVRETLVFCSLL--RLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVS 227 (679)
Q Consensus 153 i~yv~Q~~~l~~--~lTV~E~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ 227 (679)
++|++|++.++. ..|+++++.+.... ....... .+.+++++++++.+||.+ ..++.+ +.|||||||||+
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~ 411 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLAL 411 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHH
Confidence 999999876543 35777776543211 1111112 233456889999999986 555544 579999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCCccHHHHH-hCCeEEEEeCCeEEEec
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG-KTIVTSMHQPSSRVYQ-MFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~tH~~~~~i~~-~~D~v~lL~~G~iv~~G 300 (679)
||+||+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++. ++.+ ++|++++|++|++++.-
T Consensus 412 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 412 IVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999998775 57999999975 4666 58999999999988654
No 319
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.7e-36 Score=376.23 Aligned_cols=199 Identities=24% Similarity=0.353 Sum_probs=169.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+++|.|+++| .+|+|.+||.+.. +.+|++++||||++.+|+.
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p---~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g- 1324 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL---EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG- 1324 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-
Confidence 4699999999999999999999999999999999999986 4799999998764 3578899999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.+.. ..++++ +.++++..++ .+..||.+|+ ....||||||||++|||||+++|+||
T Consensus 1325 TIr~NL~~~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~IL 1393 (1495)
T PLN03232 1325 TVRFNIDPFS------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKIL 1393 (1495)
T ss_pred cHHHHcCCCC------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999997531 223333 4445555444 3456788875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+++.+.|.+.|++.. +++|+|+++|+++. ...||+|++|++|++++.|++++.++
T Consensus 1394 ILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1394 VLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999874 48999999999753 45699999999999999999998753
No 320
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.4e-36 Score=376.05 Aligned_cols=199 Identities=25% Similarity=0.365 Sum_probs=170.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|+|||.+||+|+||||||||+++|.|+++| .+|+|.+||.+.. +.+|+++++|||++.+|+.
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p---~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G- 1327 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL---ERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG- 1327 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCEecccCCHHHHHhccEEECCCCccccc-
Confidence 4699999999999999999999999999999999999986 4799999998764 3578899999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.+.. ..++++ +.++++..++ +...|+.+|+ ....||||||||++|||||+++|+||
T Consensus 1328 TIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~IL 1396 (1622)
T PLN03130 1328 TVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKIL 1396 (1622)
T ss_pred cHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999997532 123333 3444444433 4567888875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||||++|++|++++.|+++++++
T Consensus 1397 ILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1397 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999875 48999999999764 4 5699999999999999999999864
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-36 Score=341.03 Aligned_cols=202 Identities=22% Similarity=0.372 Sum_probs=169.2
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
.+..++++++|+++.+|+|+|++|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|. +.+||++
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~-------~~i~~~~ 388 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN-------ANIGYYA 388 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc-------eEEEEEc
Confidence 345566777777778999999999999999999999999999999999998764 789998763 4699999
Q ss_pred cCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 158 QDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 158 Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|++. +++.+||.|++.+.. .. ...+++++++++.+|+. +..++. +..|||||||||+||++|+.
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred ccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCc-----ccccCHHHHHHHHHHHHHhc
Confidence 9863 566799999986421 01 11234578899999994 444444 55799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE-EecChhhHH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL-YFGKGSEAM 306 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~ 306 (679)
+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+. .+.++||++++|++|+++ +.|++++..
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99999999999999999999999999887 359999999965 588899999999999998 888877653
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.9e-36 Score=340.83 Aligned_cols=198 Identities=28% Similarity=0.378 Sum_probs=161.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++++|+|+|++|++||+++|+|||||||||||++|+|+.+|+ +|+|.+++ +..+|||+|++.+++.+||+
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv~ 86 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAP-------GIKVGYLPQEPQLDPTKTVR 86 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecC-------CCEEEEEeccCCCCCCCcHH
Confidence 467999999999999999999999999999999999998863 78898875 24699999999999999999
Q ss_pred HHHHHHhhh-cC-----------CCCCCHH---------------------HHHHHHHHHHHHcCCCccccccccCccCc
Q 005754 170 ETLVFCSLL-RL-----------PRTLSTK---------------------EKTSIAEAVMAELGLTKCENTIIGNSFIR 216 (679)
Q Consensus 170 E~l~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 216 (679)
||+.++... +. ......+ +...+++++++.+|+.. .++ .++
T Consensus 87 e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~-----~~~ 160 (552)
T TIGR03719 87 ENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDA-----DVT 160 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccC-----chh
Confidence 999874311 00 0000010 01245667788888853 343 455
Q ss_pred ccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
.|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++. .+..+||++++|++|++
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDRGRG 236 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEECCEE
Confidence 79999999999999999999999999999999999999999999876 359999999965 58889999999999997
Q ss_pred E-EecChhhHHH
Q 005754 297 L-YFGKGSEAMS 307 (679)
Q Consensus 297 v-~~G~~~~~~~ 307 (679)
+ +.|+.++..+
T Consensus 237 ~~~~g~~~~~~~ 248 (552)
T TIGR03719 237 IPWEGNYSSWLE 248 (552)
T ss_pred EEecCCHHHHHH
Confidence 6 7788876544
No 323
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=289.25 Aligned_cols=214 Identities=27% Similarity=0.409 Sum_probs=182.7
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC-CCccc-----cccCcEEE
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-NKPTK-----HISKRTGF 155 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g-~~~~~-----~~~~~i~y 155 (679)
++++..+++-.+|+|+||++.+||+-+|+|||||||||+|++|+|..+| ..|+++++| .+... ..+..||-
T Consensus 9 ~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp---~~G~v~f~g~~dl~~~~e~~IAr~GIGR 85 (249)
T COG4674 9 DGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVLFDGDTDLTKLPEHRIARAGIGR 85 (249)
T ss_pred eceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC---CcceEEEcCchhhccCCHHHHHHhccCc
Confidence 3444455677899999999999999999999999999999999998876 479999998 44322 24568999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPR-----TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
-||.|..|+.+||+|||..+.....+- .....+.+++++++|...||.+.++...+ .||.||||++.|+.
T Consensus 86 KFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~LSHGqKQwLEIGM 160 (249)
T COG4674 86 KFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LLSHGQKQWLEIGM 160 (249)
T ss_pred cccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hhccchhhhhhhhe
Confidence 999999999999999999865422110 01234456789999999999998887665 59999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
-++.+|++|+||||++|+-.+...+.-++|++++. +.+|+++.||+ ..+.+++|+|.+|++|.+...|+.+++
T Consensus 161 ll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 161 LLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred eeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH-HHHHHhhheeEEEeccceeecccHHHh
Confidence 99999999999999999999999999999999986 58999999995 569999999999999999999998876
No 324
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3e-36 Score=301.46 Aligned_cols=209 Identities=27% Similarity=0.397 Sum_probs=181.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEe-cCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVT-QDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~-Q~~~l~~~ 165 (679)
...+++|+||+|++|++++++|||||||||+||+|+|++.| .+|.|.++|..+-. +.-+.+++|+ |...+...
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p---~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP---TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc---CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 34589999999999999999999999999999999999987 47999999987643 3456788875 55667777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+.+.|.+......+ ..+.++-.++.+.+.+.|+|+...+.+ +|.||-|||.|+.||.+|+++|+||||||||
T Consensus 113 lp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 113 LPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred chhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 77888877644433 467788889999999999999766654 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
-|||..++.++.+.|++..+ ++.||+.+||+.. .+.++||||++|+.|+++|+|+.++..+-|.
T Consensus 185 vgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 185 VGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999999999999975 5999999999965 5999999999999999999999999887663
No 325
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4.4e-36 Score=342.39 Aligned_cols=184 Identities=31% Similarity=0.521 Sum_probs=155.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+|+|+|+++|+ +|+|.+||.+.. +.+++.++||+|++.+|+.
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~- 410 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG- 410 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-
Confidence 46899999999999999999999999999999999999874 799999998753 3567889999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + ..++ +.++++++..++. +..||.+|+ ....||||||||++|||||+++|+++
T Consensus 411 ti~~Ni~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~il 480 (529)
T TIGR02857 411 TIAENIRLAR----P-DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLL 480 (529)
T ss_pred CHHHHHhccC----C-CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 1222 2344555555543 346788875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.||+|++|
T Consensus 481 ilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 481 LLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred EEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 9999999999999999999999885 5899999999974 45789999875
No 326
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.7e-35 Score=338.65 Aligned_cols=188 Identities=23% Similarity=0.307 Sum_probs=157.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+|+|+|.++| .+|+|.+||.+... .+++.++||+|++.+|+.
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 411 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP---QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ- 411 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-
Confidence 3589999999999999999999999999999999999986 47999999987542 467889999999988875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--cCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNS--FIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
|++|| . . ...++.+++.++.+++.+..+ .++. ....||||||||++|||||+++|++|+||||
T Consensus 412 ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~--~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ 476 (547)
T PRK10522 412 LLGPE---G------K----PANPALVEKWLERLKMAHKLE--LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEW 476 (547)
T ss_pred hhccc---c------C----chHHHHHHHHHHHcCCchhhh--ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 77776 1 0 112345678888888876433 2221 1357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEe
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~ 299 (679)
||+||+.+++.+.+.|.++.+ .|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 477 ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999987654 5899999999974 5678999999999999866
No 327
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4e-35 Score=306.11 Aligned_cols=212 Identities=29% Similarity=0.417 Sum_probs=183.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc----ccc----CcEEEEecC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK----HIS----KRTGFVTQD 159 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~----~~~----~~i~yv~Q~ 159 (679)
...++++|||++++||.+||+|.||||||-..+.+.|+++... ..+|+|.++|.+.-. .++ .+|+++||+
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 5779999999999999999999999999999999999986422 357899999987521 222 379999999
Q ss_pred C--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 160 D--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 160 ~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
+ .|-|-.|+...+.-...+ ....++++.++++.++|+.+|+.+-.... +.++++|||||||||.||.||+++|+
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~ 177 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPD 177 (534)
T ss_pred cccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCC
Confidence 8 467778888877655443 34567888899999999999998765432 57899999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||.||||++||...+.+|+++|++|.++ |..++++|||.. -+.+++|||.+|.+|++++.|+.+++.
T Consensus 178 lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred eEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 99999999999999999999999999865 999999999976 488999999999999999999988765
No 328
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=319.81 Aligned_cols=205 Identities=30% Similarity=0.505 Sum_probs=174.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
+|++|+||||++.||+.+||+||||+||||++++|...... .+|.|.+||+++.. .+|+.||.||||..+|.+
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd 626 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND 626 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc
Confidence 47899999999999999999999999999999999998763 48999999998743 578899999999999976
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHH--HHH-HHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAE--AVM-AELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~--~~l-~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
|+..|+.|+. | ..++++..+.++ .+= +.++..+..+|++|++.. .|||||||||+|||+++++|.+++||
T Consensus 627 -TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEKQRVAiARtiLK~P~iIlLD 699 (790)
T KOG0056|consen 627 -TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEKQRVAIARTILKAPSIILLD 699 (790)
T ss_pred -eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcchhhHHHHHHHhcCCcEEEEc
Confidence 9999998863 2 223444333222 221 346889999999997654 49999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|.||+||..+.++|...|.++++ |+|-|++.|..+. + -.+|.|+++++|+|++.|..+|.+.
T Consensus 700 EATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 700 EATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred chhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccEEEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999999987 7888899999875 3 4699999999999999999988754
No 329
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.3e-35 Score=365.04 Aligned_cols=197 Identities=26% Similarity=0.434 Sum_probs=159.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC-CCCcc----ccccCcEEEEecCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN-NNKPT----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~-g~~~~----~~~~~~i~yv~Q~~~l~~~ 165 (679)
+++|+|+|++|++||++||+||||||||||+++|+|+++|+ +|+|.++ |.+.. ..+|+.+|||+|++.+|+.
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~ 474 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN 474 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc
Confidence 46999999999999999999999999999999999999874 7999995 55442 2457789999999999975
Q ss_pred CCHHHHHHHHhhh-cC---------CC-----------------------------CC---------CHHHHHHHHHHHH
Q 005754 166 LTVRETLVFCSLL-RL---------PR-----------------------------TL---------STKEKTSIAEAVM 197 (679)
Q Consensus 166 lTV~E~l~~~~~~-~~---------~~-----------------------------~~---------~~~~~~~~v~~~l 197 (679)
||+||+.++... +. +. .. .....++.+.+++
T Consensus 475 -TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~ 553 (1466)
T PTZ00265 475 -SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVS 553 (1466)
T ss_pred -cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHH
Confidence 999999986310 00 00 00 0001124466666
Q ss_pred HHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcE
Q 005754 198 AELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKT 269 (679)
Q Consensus 198 ~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~t 269 (679)
+.+++ .+..||.+|. .+..||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++++ +|+|
T Consensus 554 ~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~T 632 (1466)
T PTZ00265 554 KKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRI 632 (1466)
T ss_pred HHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCE
Confidence 66655 4455777875 4778999999999999999999999999999999999999999999999976 5899
Q ss_pred EEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 270 IVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 270 ii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
+|+++|+++. + +.||+|++|++|
T Consensus 633 vIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 633 TIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred EEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 9999999753 4 789999999986
No 330
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.8e-35 Score=368.20 Aligned_cols=199 Identities=23% Similarity=0.353 Sum_probs=170.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+||||+|++||.+||+|+||||||||+++|.|+++| .+|+|.+||.+.. +.+|+.++||||++.+|+.
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p---~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g- 1398 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV---CGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG- 1398 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-
Confidence 4599999999999999999999999999999999999986 3799999998764 3578899999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhC-CCe
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLIN-PSL 238 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~-P~l 238 (679)
|++|||... ...+. +.+.++++..++. +..|+.+|+ ....||||||||++|||||+++ |+|
T Consensus 1399 TIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~I 1467 (1560)
T PTZ00243 1399 TVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGF 1467 (1560)
T ss_pred cHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCE
Confidence 999999532 12233 3455666666654 356888875 4567999999999999999996 899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||||+||+++...|.+.|++.. +++|||+++|+++ ....||+|++|++|++++.|+++++++
T Consensus 1468 LlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1468 ILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999864 4799999999975 457799999999999999999998753
No 331
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.6e-35 Score=369.23 Aligned_cols=199 Identities=24% Similarity=0.310 Sum_probs=169.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|||++|+|||.+||+|+||||||||+++|.|+++| .+|+|.+||.+..+ .+|+++++|||++.+|+.
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~---~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g- 1374 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES---AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG- 1374 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC---CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-
Confidence 3599999999999999999999999999999999999986 47999999988643 578899999999999987
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.... ..++++ +.++++..++. +..|+.+|+ ....||||||||++|||||+++|+||
T Consensus 1375 TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~IL 1443 (1522)
T TIGR00957 1375 SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKIL 1443 (1522)
T ss_pred cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999996211 123333 44555555543 456888875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+++...+.+.|++.. +++|||+++|+++. ...+|||++|++|++++.|++++.++
T Consensus 1444 iLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1444 VLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999864 47999999999753 56799999999999999999998764
No 332
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.3e-35 Score=335.77 Aligned_cols=191 Identities=21% Similarity=0.271 Sum_probs=157.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+|+|+|.++| .+|+|.+||.+... .+++.++||+|++.+|+.
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 430 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP---QEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD- 430 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-
Confidence 4699999999999999999999999999999999999986 47999999987542 457789999999998875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-ccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI-IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
|++||.. + ...++.++++++.+++.+..+.. -|......||||||||++|||||+.+|++++|||||
T Consensus 431 ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~t 498 (555)
T TIGR01194 431 LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWA 498 (555)
T ss_pred hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 7888731 1 12234567788999887643321 121223569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH-HHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEe
Q 005754 246 SGLDSTAAYRLVSTLG-SLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~-~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~ 299 (679)
++||+.+++.+.+.+. ++..+|+|+|+++|+++ ..+.||+|++|++|+++..
T Consensus 499 s~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 499 ADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999998764 56567899999999974 4678999999999999754
No 333
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.7e-35 Score=304.93 Aligned_cols=198 Identities=22% Similarity=0.319 Sum_probs=162.1
Q ss_pred Ccccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEE-----------ECCCCccc---
Q 005754 83 GSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-----------TNNNKPTK--- 147 (679)
Q Consensus 83 ~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~-----------~~g~~~~~--- 147 (679)
+++++|+++ .+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|+|. ++|.+...
T Consensus 5 ~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 5 EPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred CcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhH
Confidence 456677665 5999999 59999999999999999999999999999874 78885 66765422
Q ss_pred ccc---CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHH
Q 005754 148 HIS---KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 148 ~~~---~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 224 (679)
..+ ..++|++|+..+++. ++.+++.+.. .....++.++++++.+||.+..+. .++.|||||||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~q 146 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDR-----NIDQLSGGELQ 146 (255)
T ss_pred HhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHH
Confidence 111 247899999888874 8888887632 122334567899999999875554 34579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 225 RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 225 Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+ |++.+.|
T Consensus 147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999999999888999999999965 5777999999994 6666544
No 334
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-35 Score=297.75 Aligned_cols=173 Identities=28% Similarity=0.455 Sum_probs=154.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
..+++||||+|++||.++|+|+||||||||-|+|.|+.+| ++|+|.++|++.....
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~--------------------- 81 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLS--------------------- 81 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcc---------------------
Confidence 5799999999999999999999999999999999999987 4899999998742211
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
+.+..+++.++|+.+||... ..++++++||||||||++|||||+.+|+++++|||+|+||.
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~----~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEE----FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHH----HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 34566789999999998652 34578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 251 TAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
..+.+++++|+++.++ |.|.++++||.+ .+..++||+.+|..|+++..|+.+++..
T Consensus 143 SiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 143 SVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999875 999999999975 5889999999999999999999988743
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.1e-35 Score=333.47 Aligned_cols=202 Identities=23% Similarity=0.371 Sum_probs=164.4
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
++..+++++.|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|+ +|+|.+++. ..+||++
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~-------~~i~~v~ 393 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET-------VKLAYVD 393 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc-------eEEEEEe
Confidence 345566666777778999999999999999999999999999999999998764 789988432 2599999
Q ss_pred cCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 158 QDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 158 Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
|+. .+++.+||.||+.+...... .... ...++++++.+|+.+ ..+.. +.+|||||||||+||++|+.+
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~ 463 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGERNRLHLAKTLKQG 463 (556)
T ss_pred CchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHHHHHHHhcC
Confidence 996 78889999999987542211 1111 123456899999963 34443 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC-CeEE-EecChh
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE-GRCL-YFGKGS 303 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~-G~iv-~~G~~~ 303 (679)
|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.++||++++|++ |++. +.|+.+
T Consensus 464 p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 464 GNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHH
Confidence 99999999999999999999999999873 4 8999999965 58899999999986 7876 456544
No 336
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.7e-35 Score=333.71 Aligned_cols=196 Identities=23% Similarity=0.323 Sum_probs=165.7
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEec
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q 158 (679)
...++++++|++. .|+++|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++ ..++|++|
T Consensus 341 l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~---------~~i~y~~Q 407 (590)
T PRK13409 341 VEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE---------LKISYKPQ 407 (590)
T ss_pred EEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe---------eeEEEecc
Confidence 4556666677654 599999999999999999999999999999999998864 7888875 25999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+..+.+.+||+|++.+.... ... ...++++++.++|.+..++. +..|||||||||+||++|+.+|++
T Consensus 408 ~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 408 YIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred cccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 98888899999999875211 111 12467899999998766554 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+..++||+++|+ |++...|..
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999999999999999999874 899999999965 5788999999996 588777753
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.4e-34 Score=331.30 Aligned_cols=202 Identities=23% Similarity=0.376 Sum_probs=164.6
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
++..+++++.|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+| .+|+|.+++. ..+||++
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p---~~G~i~~~~~-------~~i~~v~ 391 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP---DSGTIKIGET-------VKLAYVD 391 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCeEEEECCc-------eEEEEEe
Confidence 34556667777777899999999999999999999999999999999999876 3789988432 2599999
Q ss_pred cCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 158 QDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 158 Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
|++ .+++.+||.|++.+...... .... ..+++++++.+|+.+ ..+.. +..|||||||||+||++|+.+
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHHHHHHHhhC
Confidence 996 47888999999987642211 1111 123557899999964 34443 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC-CeEE-EecChh
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE-GRCL-YFGKGS 303 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~-G~iv-~~G~~~ 303 (679)
|++|||||||+|||+.++..+.+.|+++. + |||++|||+. .+.++||++++|++ |++. +.|+.+
T Consensus 462 p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 462 GNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 99999999999999999999999999883 3 8999999965 58889999999986 5876 556554
No 338
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.7e-34 Score=360.91 Aligned_cols=198 Identities=23% Similarity=0.304 Sum_probs=169.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|||++|++||.+||+|+||||||||+++|.|+++ .+|+|.+||.+... .+|++++||||++.+|+.
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G- 1306 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG- 1306 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-
Confidence 569999999999999999999999999999999999975 37999999987642 578899999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.... ..+ ++.+.++++..+|. +..|+.+++ ....||||||||++|||||+++|+||
T Consensus 1307 TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1307 TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999995321 122 23456667776663 456788875 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||+|++|++|+++..|+++++++
T Consensus 1376 lLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999874 4799999999975 356699999999999999999998753
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=333.86 Aligned_cols=202 Identities=26% Similarity=0.382 Sum_probs=167.7
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
.+..+++++.|+++.+|+|+|++|++||+++|+||||||||||||+|+|..+|+ +|+|.+++. ..+||++
T Consensus 312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~-------~~igy~~ 381 (638)
T PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG-------IKLGYFA 381 (638)
T ss_pred eEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC-------EEEEEec
Confidence 455667778888888999999999999999999999999999999999998764 788988632 2599999
Q ss_pred cCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 158 QDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 158 Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|+. .+.+..|+.+++.- .. .....+.++++|+.+++.. ..++++ +.|||||||||+||++|+.
T Consensus 382 Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 382 QHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred CcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHHHHHhc
Confidence 974 35566788777531 11 1123456788999999963 455444 4699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE-EecChhhHHH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL-YFGKGSEAMS 307 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 307 (679)
+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.++..+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999987 34 9999999964 588899999999999997 8898887644
No 340
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.8e-34 Score=280.73 Aligned_cols=153 Identities=26% Similarity=0.391 Sum_probs=134.7
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI 161 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~ 161 (679)
.+++++|+++.+++++ +++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|. .++|++|+..
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~--------~i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGI--------TPVYKPQYID 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCE--------EEEEEcccCC
Confidence 3567788888899985 899999999999999999999999999999864 799999874 2788888532
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
||||||||++|||+|+.+|++++|
T Consensus 72 --------------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 72 --------------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred --------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCCccHHHHHhCCeEEEEeCCeEEEe--cChh
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRG-KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF--GKGS 303 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~--G~~~ 303 (679)
||||+|||+.++..+.+.|+++++++ .|||++||++. .+.++||++++|+++..++. |+|.
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999999999999999999998765 99999999964 57789999999998766654 5554
No 341
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=346.24 Aligned_cols=222 Identities=28% Similarity=0.448 Sum_probs=201.3
Q ss_pred CccCCCCccccccccc-eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----ccc
Q 005754 77 SSTDDQGSTAKIQERT-ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HIS 150 (679)
Q Consensus 77 ~~~~~~~~~~~~~~~~-iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~ 150 (679)
......++++.|+.+. +++++|+.|++||+.+++|||||||||++|+|.|..+| .+|+++++|.+... ..+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~---t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP---TSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC---CcceEEEecCccccccchhhhh
Confidence 3455677788888777 99999999999999999999999999999999999886 47899999887643 257
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
+.+||+||+|.+++.+|.+|++.+.++++ ..+..+..+.++.+++.+||.+.+|+.++ .+|||+|||+++|.
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAI 711 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHH
Confidence 78999999999999999999999999886 45567777889999999999999888765 59999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
||+.+|++++|||||+|+||.+++.+.++++++.+.|+.||+|||.. +|...+|||+.+|.+|++...|++++....|.
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 99999999999999999999999999999999999888999999995 57999999999999999999999999998875
No 342
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=5.6e-34 Score=270.18 Aligned_cols=138 Identities=31% Similarity=0.547 Sum_probs=125.3
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+++|+++.+|+++|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|. +.++|++|
T Consensus 7 ~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~-------~~i~~~~~------ 70 (144)
T cd03221 7 SKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST-------VKIGYFEQ------ 70 (144)
T ss_pred EEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe-------EEEEEEcc------
Confidence 3444455799999999999999999999999999999999999876 4799999883 46899998
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
||+|||||++|||+|+.+|++++||||
T Consensus 71 -----------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 71 -----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|+|||+.++..+.+.|+++ ++||+++||++. ++.+++|++++|++|+
T Consensus 98 ~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 98 TNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred ccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999987 479999999965 5778999999999985
No 343
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.5e-33 Score=275.31 Aligned_cols=160 Identities=25% Similarity=0.345 Sum_probs=132.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
.+++|+|+|+++++|++++|+||||||||||||+|.+ .+|++.+++... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~-~~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLP-KFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCccc-ccccccEEEEhH-----------
Confidence 4679999999999999999999999999999999963 267888877632 222345788877
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhC--CCeEEEeCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLIN--PSLLILDEPTS 246 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~--P~lllLDEPts 246 (679)
.+.++.++|... .+. .++.||||||||++||++|+.+ |+++||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 135677787642 333 4567999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEe
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~ 299 (679)
|||+.++..+.+.|++++++|+|||++||++. .+ +.+|++++|.+|+..+.
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~~ 169 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKSG 169 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCCC
Confidence 99999999999999999878999999999975 34 68999999976554333
No 344
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.4e-34 Score=276.57 Aligned_cols=203 Identities=29% Similarity=0.421 Sum_probs=168.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc----ccCcEEEEecCC--CC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH----ISKRTGFVTQDD--IL 162 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~----~~~~i~yv~Q~~--~l 162 (679)
..+++|+++|++|.+|+++.|+|.||||||||+|+|+|.+.|+ +|+|.++|.+.++. ....++-|+||+ ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt 93 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHHhhHHHHHhcchhhCC
Confidence 3578999999999999999999999999999999999998864 79999999887542 223578899997 46
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLST---KEKTSIAEAVMAE--LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~--lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.||++||+..+......+..+. ...++...+-++. +||++..++++| -|||||||-++++.|-++.|+
T Consensus 94 ~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pk 168 (263)
T COG1101 94 APELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPK 168 (263)
T ss_pred cccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCc
Confidence 999999999998654322222222 2233333444555 466787888777 499999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||+|||=|++|||.+++.+++.=.++.++ +.|.+++||... +...+-+|.++|++|+|+.+-
T Consensus 169 iLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 169 ILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 99999999999999999999999998764 789999999965 588999999999999999764
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.2e-33 Score=328.40 Aligned_cols=203 Identities=25% Similarity=0.372 Sum_probs=166.9
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
++..+++++.|+++++|+|+|++|++|++++|+||||||||||||+|+|+.+|+ +|+|.+ |.. -.+||++
T Consensus 319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~------~~i~y~~ 388 (635)
T PRK11147 319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK------LEVAYFD 388 (635)
T ss_pred eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC------cEEEEEe
Confidence 456677888888888999999999999999999999999999999999998764 788888 432 2599999
Q ss_pred cCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 158 QDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 158 Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
|+. .+++.+||.||+.+..... ... .....+.++++.+++. +..++++ +.|||||||||+||++|+.+
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la~al~~~ 458 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLARLFLKP 458 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcC
Confidence 985 5889999999998743210 011 1234577889999985 3445444 57999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe-CCeEEE-ecChhh
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS-EGRCLY-FGKGSE 304 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~-~G~iv~-~G~~~~ 304 (679)
|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+..+||++++|+ +|++.. .|+-++
T Consensus 459 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 459 SNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 9999999999999999999999999876 459999999954 5788999999998 799864 566554
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=327.78 Aligned_cols=203 Identities=24% Similarity=0.341 Sum_probs=157.7
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL 162 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l 162 (679)
+++++|+++.+|+||||+|++|++++|+||||||||||||+|+|..+|+ +|+|.++|.. .++|++|+...
T Consensus 6 nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~-------~i~~~~q~~~~ 75 (638)
T PRK10636 6 SLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW-------QLAWVNQETPA 75 (638)
T ss_pred EEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC-------EEEEEecCCCC
Confidence 3445566778999999999999999999999999999999999988764 7999988742 37899986533
Q ss_pred CCCCCHHHHHHHHhh-----------------------hcC-CCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcc
Q 005754 163 YPHLTVRETLVFCSL-----------------------LRL-PRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRG 217 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 217 (679)
+ ..|+.+++.-... +.. .......+...+++++++.+|+. +..+.++ ..
T Consensus 76 ~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~-----~~ 149 (638)
T PRK10636 76 L-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV-----SD 149 (638)
T ss_pred C-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch-----hh
Confidence 3 2466554431100 000 00000112345788999999996 4555554 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 218 LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.++||++++|++|++.
T Consensus 150 LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 150 FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999998875 569999999964 588899999999999996
Q ss_pred -EecChhhH
Q 005754 298 -YFGKGSEA 305 (679)
Q Consensus 298 -~~G~~~~~ 305 (679)
|.|+.+..
T Consensus 226 ~~~g~~~~~ 234 (638)
T PRK10636 226 EYTGNYSSF 234 (638)
T ss_pred EecCCHHHH
Confidence 66766543
No 347
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-33 Score=351.35 Aligned_cols=191 Identities=27% Similarity=0.411 Sum_probs=158.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+|+++++||.++|+||||||||||+++|.|.++|. +|.+. ..++.++||+|++.+++. |++|
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~--------~~~~~Iayv~Q~p~Lf~g-TIre 697 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV--------VIRGSVAYVPQVSWIFNA-TVRE 697 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE--------EecCcEEEEcCccccccc-cHHH
Confidence 46899999999999999999999999999999999999874 33331 346789999999999975 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
||.|+.. .+++ +.+++++..+ |.+..+|.+|++ ...||||||||++||||++++|+|+||||
T Consensus 698 NI~fg~~------~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDE 766 (1495)
T PLN03232 698 NILFGSD------FESE----RYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDD 766 (1495)
T ss_pred HhhcCCc------cCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9998631 2222 3344444443 345567889875 55799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 244 PTSGLDSTAAYRLVST-LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~-L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||+||+.+++++++. ++.+ .+|+|+|++||+++ ....+|+|++|++|++++.|+.++..+
T Consensus 767 ptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 767 PLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999988765 4443 35899999999975 467899999999999999999988753
No 348
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.1e-33 Score=276.65 Aligned_cols=206 Identities=26% Similarity=0.359 Sum_probs=180.7
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~l 166 (679)
+.....+|+||||++++||.++|+|+||||||||||+|+|.++|+ +|+|.++|+... -+.-..| +-|.+
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---~G~v~v~G~v~~-li~lg~G-------f~pel 104 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGKVAP-LIELGAG-------FDPEL 104 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC---CceEEEcceEeh-hhhcccC-------CCccc
Confidence 345678999999999999999999999999999999999999974 789999886421 1111222 34679
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
|.+||+.+...+. .+++++.+++++++++.-+|.+..|.++. .+|.||+-|++.|.+...+|++||+||-.+
T Consensus 105 TGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvk-----tYSSGM~aRLaFsia~~~~pdILllDEvla 176 (249)
T COG1134 105 TGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVK-----TYSSGMYARLAFSVATHVEPDILLLDEVLA 176 (249)
T ss_pred chHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchh-----hccHHHHHHHHHhhhhhcCCCEEEEehhhh
Confidence 9999999866542 45788999999999999999998887765 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHc
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~ 312 (679)
--|+.=++.-.+.++++.++++|||+++|++. .+.++|||+++|++|++.+.|+++++.++|++.
T Consensus 177 vGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 177 VGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 99999999999999999888999999999965 699999999999999999999999999988653
No 349
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.6e-34 Score=260.35 Aligned_cols=183 Identities=30% Similarity=0.490 Sum_probs=160.7
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYP 164 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~ 164 (679)
+.++...|.|+|++|.+||++-|||||||||||||..+.|.+.+.-..+|++++|++..+. ..+|++|..+||+.+||
T Consensus 11 ~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFp 90 (213)
T COG4136 11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFP 90 (213)
T ss_pred cCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccc
Confidence 4456789999999999999999999999999999999999988766689999999987653 56789999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.++|.+|+.|+. |...+.+.+++.++..|++.||....+ +.+.+||||||-||++-|+|+..|+.++||||
T Consensus 91 hlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~-----~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEP 161 (213)
T COG4136 91 HLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFH-----QDPATLSGGQRARVALLRALLAQPKALLLDEP 161 (213)
T ss_pred ccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhh-----cChhhcCcchHHHHHHHHHHHhCcceeeeCCc
Confidence 999999998853 455555677778899999999988665 34678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH-HHhCCcEEEEEeCCcc
Q 005754 245 TSGLDSTAAYRLVSTLGS-LVQRGKTIVTSMHQPS 278 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~-l~~~g~tii~~tH~~~ 278 (679)
+|.||..-+.++.+..-. +...|..+|.+|||..
T Consensus 162 FS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 162 FSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999999988754 4556999999999954
No 350
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-34 Score=300.40 Aligned_cols=203 Identities=31% Similarity=0.491 Sum_probs=173.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~ 165 (679)
.+++|+++|+.+++|+.+|++||||+||||++++|...+.+ .+|.|.++|++.. +.+|+-||.||||..||.+
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~---~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND 351 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV---NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC---cCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh
Confidence 47899999999999999999999999999999999999875 4899999998863 3578889999999999875
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIA-----EAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
|...|+.|+.. ..+.++..+.+ .+.++ .+.+..++.||.+.. .|||||||||+|||+++++|+||+
T Consensus 352 -ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgergl-klSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 352 -TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGL-KLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred -hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhee-eccCchHHHHHHHHHHhcCCCEEE
Confidence 99999988631 23444443332 22333 457788999997654 499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||.||+||..+.+++...|++++ .|+|.+++.|..+. + --+|+|++|++|+|++.|+.++++.
T Consensus 423 ~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 423 LDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred EehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence 999999999999999999999987 58999999999875 3 4699999999999999999998765
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.3e-33 Score=324.16 Aligned_cols=203 Identities=22% Similarity=0.375 Sum_probs=160.3
Q ss_pred cCCCCcccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 79 TDDQGSTAKIQ-ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 79 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
+..+++++.|+ ++.+|+|+||+|++|++++|+||||||||||||+|+|+++|+ +|+|.+++ +.++||++
T Consensus 509 L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~-------~~~igyv~ 578 (718)
T PLN03073 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSA-------KVRMAVFS 578 (718)
T ss_pred EEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECC-------ceeEEEEe
Confidence 34455566664 356999999999999999999999999999999999998864 68888764 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
|+. .+.+++.++.........+. .. .+.++++++.+|+.+ ..+. .+..|||||||||+||++|+.+|
T Consensus 579 Q~~--~~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaLAraL~~~p 646 (718)
T PLN03073 579 QHH--VDGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKP 646 (718)
T ss_pred ccc--cccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHHHHHHhcCC
Confidence 985 34566666643321111111 11 245778999999973 3343 45679999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE-EecChhhHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL-YFGKGSEAMS 307 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 307 (679)
++|||||||+|||+.++..+++.|++. .| |||++|||+. .+..+||++++|++|+++ +.|+.++..+
T Consensus 647 ~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 647 HILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999999999999998888765 34 9999999965 588899999999999998 7787776443
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.3e-33 Score=349.21 Aligned_cols=190 Identities=27% Similarity=0.425 Sum_probs=159.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCee-eEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT-GTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~-G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
+++|+|+|+++++||.++|+||||||||||+++|.|.+++. + |+|.+ ++.++||+|++.+++. |++
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l---------~~~Iayv~Q~p~Lfng-TIr 696 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVI---------RGTVAYVPQVSWIFNA-TVR 696 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEE---------cCeEEEEcCccccCCC-CHH
Confidence 46899999999999999999999999999999999999864 5 77764 5579999999999875 999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
|||.|+.. .+ +++.+++++..+| .+..+|.+|++ ...||||||||++||||+.++|+|+|||
T Consensus 697 eNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLD 765 (1622)
T PLN03130 697 DNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFD 765 (1622)
T ss_pred HHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEEC
Confidence 99998632 12 2334455554444 44567889865 5579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 243 EPTSGLDSTAAYRLVS-TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~-~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||+||+++++++++ .++.+. +|+|+|++||++. ....+|+|++|++|++++.|+.++..+
T Consensus 766 EptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 766 DPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999998865 555553 5899999999974 578899999999999999999988753
No 353
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.6e-33 Score=326.20 Aligned_cols=185 Identities=21% Similarity=0.314 Sum_probs=149.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+++++ +|++.+++ ++.++||+|++.+++. |++|
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~e 533 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA-------KGKLFYVPQRPYMTLG-TLRD 533 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC-------CCcEEEECCCCCCCCc-CHHH
Confidence 46999999999999999999999999999999999998763 57887753 4579999999998887 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG----NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
|+.++....... .....++.++++++.+++.+..+++.| ....+.||||||||++|||+|+++|+++||||||+
T Consensus 534 ni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts 611 (659)
T TIGR00954 534 QIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611 (659)
T ss_pred HHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 998753211000 000113456788999999765543221 11346899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
|||+.+++.+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.
T Consensus 612 ~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 612 AVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 9999999999998876 3899999999975 3588999999973
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.1e-33 Score=321.34 Aligned_cols=199 Identities=23% Similarity=0.346 Sum_probs=153.7
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
++.|+++.+|+||||+|++|++++|+||||||||||||+|+|..+|+ +|+|.++|.. .++|++|.+....
T Consensus 10 s~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~-------~~~~l~q~~~~~~ 79 (635)
T PRK11147 10 WLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL-------IVARLQQDPPRNV 79 (635)
T ss_pred EEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC-------EEEEeccCCCCCC
Confidence 33445567999999999999999999999999999999999998764 7999987632 2577777653333
Q ss_pred CCCHHHHHHHH------------------------------hhhc--CCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005754 165 HLTVRETLVFC------------------------------SLLR--LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212 (679)
Q Consensus 165 ~lTV~E~l~~~------------------------------~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 212 (679)
..+|.+++..+ ..+. .. .....+...+++++++.+|+.. +
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~--~----- 151 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLGLDP--D----- 151 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCCCCC--C-----
Confidence 34565553210 0000 00 0000123456888999999963 3
Q ss_pred ccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 213 ~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+.+..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++. .|||++|||+. .+.++||++++|+
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~-~l~~~~d~i~~L~ 227 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRS-FIRNMATRIVDLD 227 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHH-HHHHhcCeEEEEE
Confidence 3455799999999999999999999999999999999999999999999873 59999999964 5788999999999
Q ss_pred CCeEE-EecChhhH
Q 005754 293 EGRCL-YFGKGSEA 305 (679)
Q Consensus 293 ~G~iv-~~G~~~~~ 305 (679)
+|+++ |.|+.++.
T Consensus 228 ~G~i~~~~g~~~~~ 241 (635)
T PRK11147 228 RGKLVSYPGNYDQY 241 (635)
T ss_pred CCEEEEecCCHHHH
Confidence 99997 56776653
No 355
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-33 Score=264.78 Aligned_cols=184 Identities=26% Similarity=0.418 Sum_probs=160.9
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc---ccCcEEEEec
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH---ISKRTGFVTQ 158 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~---~~~~i~yv~Q 158 (679)
++++-..+.+.++.++||++.+||++-|.|||||||||||++|+|+..|+ +|+|.++|..+... .++.+-|+-.
T Consensus 6 ~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~~~~l~yLGH 82 (209)
T COG4133 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGH 82 (209)
T ss_pred hhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhHHHHHHHhhc
Confidence 44555567789999999999999999999999999999999999999874 79999998876542 3467788888
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
.+.+=+.|||.|||.|...+... ...+.+.+.++.+||....|.+++ .||-||||||+|||-+++.+++
T Consensus 83 ~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pL 151 (209)
T COG4133 83 QPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPL 151 (209)
T ss_pred cccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCc
Confidence 88888999999999997665422 123457888999999998888876 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 152 WiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 152 WILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred eeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999999999999999999999999999864
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.4e-33 Score=318.55 Aligned_cols=190 Identities=26% Similarity=0.346 Sum_probs=157.7
Q ss_pred CCcccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEE-----------ECCCCcccc-
Q 005754 82 QGSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-----------TNNNKPTKH- 148 (679)
Q Consensus 82 ~~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~-----------~~g~~~~~~- 148 (679)
..++++|+.+ .+|++++ .+++||+++|+||||||||||||+|+|+++|+ .|+|. ++|.+....
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~ 152 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYF 152 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHH
Confidence 4478889875 5999999 99999999999999999999999999999874 68886 788764321
Q ss_pred -----ccCcEEEEecCCCCCCC---CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH
Q 005754 149 -----ISKRTGFVTQDDILYPH---LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG 220 (679)
Q Consensus 149 -----~~~~i~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 220 (679)
.+.++++.+|.....|. .||+|++... +.+++++++++.+||.+..|+.++ .|||
T Consensus 153 ~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSg 215 (590)
T PRK13409 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSG 215 (590)
T ss_pred HHHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 12345666665443333 3999998631 233568899999999887666554 6999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 221 GERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 221 GerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++|.++
T Consensus 216 Ge~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 216 GELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999988 999999999965 588999999999864
No 357
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-33 Score=259.92 Aligned_cols=216 Identities=26% Similarity=0.411 Sum_probs=172.1
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC---CCcc-----c--
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN---NKPT-----K-- 147 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g---~~~~-----~-- 147 (679)
..+..+++|.|+...-.+||||++.|||+++|+|.|||||||||++|++++.|+ .|+|.+.. ++.. +
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhhhchHH
Confidence 456778899999999999999999999999999999999999999999999875 56676643 2211 1
Q ss_pred ---cccCcEEEEecCCC--CCCCC----CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCccc
Q 005754 148 ---HISKRTGFVTQDDI--LYPHL----TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGI 218 (679)
Q Consensus 148 ---~~~~~i~yv~Q~~~--l~~~l----TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 218 (679)
.+|..-|+|.|++. +-... .+.|-++-.. .......++.+.++|+++.++.. .+ +..++.+
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G------~RHYG~iR~~a~~WL~~VEI~~~---Ri-DD~PrtF 152 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG------ARHYGNIRAEAQDWLEEVEIDLD---RI-DDLPRTF 152 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhh------hhhhhhHHHHHHHHHHhcccCcc---cc-cCccccc
Confidence 12335799999863 32222 3444443211 11234566778889999988753 23 4568899
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 219 SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 219 SgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
|||+|||+.|||-|++.|+++|+||||.|||...+..++++++.|..+ |.+++++|||.. -+.-++||.++|++|+++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk~g~vv 231 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQGQVV 231 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeecCCCEe
Confidence 999999999999999999999999999999999999999999999865 999999999965 356689999999999999
Q ss_pred EecChhhHHH
Q 005754 298 YFGKGSEAMS 307 (679)
Q Consensus 298 ~~G~~~~~~~ 307 (679)
+.|-.+.+++
T Consensus 232 e~GLTDrvLD 241 (258)
T COG4107 232 ESGLTDRVLD 241 (258)
T ss_pred cccccccccc
Confidence 9998877643
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-32 Score=262.31 Aligned_cols=147 Identities=41% Similarity=0.742 Sum_probs=130.8
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI 161 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~ 161 (679)
+++.++.+|+++|+++++|++++|+||||||||||+++|+|.+++ ..|++.++|.+... ..++.++|++|
T Consensus 7 ~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--- 80 (157)
T cd00267 7 FRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEELRRRIGYVPQ--- 80 (157)
T ss_pred EEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHHHHhceEEEee---
Confidence 344456799999999999999999999999999999999999875 47999999875432 33567888888
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|||||+||++||++++.+|++++|
T Consensus 81 --------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 81 --------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred --------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
||||+|||+.++..+.+.|+++.+.++|++++||++. .+...||++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999877899999999965 5777899999999875
No 359
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.98 E-value=1.3e-31 Score=335.82 Aligned_cols=195 Identities=26% Similarity=0.428 Sum_probs=158.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+|+++++||+++|+|||||||||||++|+|.++| .+|+|.++| .++||+|++.+++ .||+|
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~---~~G~i~~~g---------~i~yv~Q~~~l~~-~Ti~e 717 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVHMKG---------SVAYVPQQAWIQN-DSLRE 717 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc---CCcEEEECC---------EEEEEcCCccccC-CcHHH
Confidence 4699999999999999999999999999999999999886 478999886 4899999998875 69999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAE--AVMAELGL-TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|+.|+.. ..++..++.++ ++.+.++. .+..+|.+|+ .+..||||||||++|||||+.+|++++||||||+
T Consensus 718 NI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~sa 790 (1522)
T TIGR00957 718 NILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790 (1522)
T ss_pred HhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9998532 12222222111 12233333 3344577775 4678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH--hCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 248 LDSTAAYRLVSTLGSLV--QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~--~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||+.+++.+.+.+.+.. .+|+|+|++||++. ....+|+|++|++|+++..|+.+++.+
T Consensus 791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999997542 35899999999975 346699999999999999999988753
No 360
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=1.5e-31 Score=253.05 Aligned_cols=207 Identities=26% Similarity=0.424 Sum_probs=178.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC--CC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI--LY 163 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~--l~ 163 (679)
...+++.|||++++|+-+||+|.||||||||.|+|+|.++| ++|+|.+||++... ...++|-++|||+. +-
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P---TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~N 101 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC---CCceEEECCccccccchHhhhhheeeeecCCccccC
Confidence 34689999999999999999999999999999999999987 47999999987532 23467999999974 66
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
|.+.+.+-|.... ++...+..+++++++.+.|+.+||-... .+-+++.||-||||||++||||+.+|+|++.||
T Consensus 102 PRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdh----an~~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 102 PRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDH----ANYYPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccc----cccchhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 7777777776654 3445567788889999999999996421 234577899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
..++||...+.++.++..+|.++ |.+-|.++.+.. -+..++|+|++|++|++++.|++.+++
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCChhhhh
Confidence 99999999999999999999865 999999999865 588999999999999999999998863
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=3.7e-31 Score=330.95 Aligned_cols=192 Identities=29% Similarity=0.486 Sum_probs=157.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
.+++|+|+|++|++||+++|+|||||||||||++|+|..+| .+|+|.++| .++||+|++.+++. ||+
T Consensus 438 ~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~---~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~ 504 (1490)
T TIGR01271 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP---SEGKIKHSG---------RISFSPQTSWIMPG-TIK 504 (1490)
T ss_pred cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECC---------EEEEEeCCCccCCc-cHH
Confidence 36799999999999999999999999999999999999986 478999987 48999999999885 999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSI-----AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
||+.|+... .....++. .++.++.+ .+..+|.+|++ +..||||||||++||||++.+|+++|||||
T Consensus 505 eNI~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep 575 (1490)
T TIGR01271 505 DNIIFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSP 575 (1490)
T ss_pred HHHHhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999986321 11111111 12222222 22335667754 678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 245 TSGLDSTAAYRLVST-LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 245 tsgLD~~~~~~i~~~-L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||+.++..+++. ++++. +|+|+|++||++.. ...||++++|++|+++..|+.++..
T Consensus 576 ~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 576 FTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999984 66664 48999999999753 4569999999999999999988875
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=3.7e-31 Score=331.31 Aligned_cols=195 Identities=30% Similarity=0.429 Sum_probs=153.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
++++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++ +.++|++|++.+++ .|
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~---------~~i~yv~Q~~~l~~-~T 736 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE---------RSIAYVPQQAWIMN-AT 736 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC---------CeEEEEeCCCccCC-Cc
Confidence 34577999999999999999999999999999999999998864 6888752 46999999998875 69
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKT-----SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
|+||+.|... ...+... ..+++.++.+ .+..++.+|. .+..||||||||++|||||+.+|+++|||
T Consensus 737 v~enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLD 807 (1560)
T PTZ00243 737 VRGNILFFDE------EDAARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLD 807 (1560)
T ss_pred HHHHHHcCCh------hhHHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999988421 1111111 1223334444 1122344553 46789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||++||+.++..+++.+.....+|+|+|++||++. ....+|+|++|++|++++.|+.++..
T Consensus 808 EP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 808 DPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999998754322335899999999975 34789999999999999999988764
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.8e-31 Score=299.30 Aligned_cols=203 Identities=29% Similarity=0.450 Sum_probs=164.4
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI 161 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~ 161 (679)
.++++.|+.+.+|+|+|+++.+|+.+||+|+||||||||||+|+|...|+ +|+|...+. .+++|++|++.
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~-------~~v~~l~Q~~~ 76 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG-------LRVGYLSQEPP 76 (530)
T ss_pred eeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC-------ceEEEeCCCCC
Confidence 44566677899999999999999999999999999999999999998764 677776532 35899999999
Q ss_pred CCCCCCHHHHHHHHhhhc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005754 162 LYPHLTVRETLVFCSLLR-------------LPRT--------------LSTKEKTSIAEAVMAELGLTKCENTIIGNSF 214 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 214 (679)
..+..||.+.+.-+..-. ++.. ...-+.+.+++.++..+|+.+. +++++
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~--- 152 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS--- 152 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh---
Confidence 999999999886532100 0000 0001123567788888999876 55555
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
+||||||.||+||++|+.+|++|||||||++||..+...+-+.|++. +| |+|++||| +..+-+.|++|+-++.|
T Consensus 153 --~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t~I~~ld~g 226 (530)
T COG0488 153 --SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVATHILELDRG 226 (530)
T ss_pred --hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhhheEEecCC
Confidence 69999999999999999999999999999999999999999999854 46 99999999 67788999999999999
Q ss_pred eEE-EecChhh
Q 005754 295 RCL-YFGKGSE 304 (679)
Q Consensus 295 ~iv-~~G~~~~ 304 (679)
++. |.|.-+.
T Consensus 227 ~l~~y~Gny~~ 237 (530)
T COG0488 227 KLTPYKGNYSS 237 (530)
T ss_pred ceeEecCCHHH
Confidence 875 5565443
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.5e-30 Score=265.03 Aligned_cols=198 Identities=23% Similarity=0.339 Sum_probs=135.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHhcCcCC---C--CCeeeEEEECCCCcc-cccc-CcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTML-NVLAGRLHQ---G--HGLTGTILTNNNKPT-KHIS-KRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL-~~L~G~~~~---~--~~~~G~i~~~g~~~~-~~~~-~~i~yv~Q~~~ 161 (679)
+..+|+||||++++||+++|+||||||||||+ ..+...-++ + ....+........+. ...+ ....+..|++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 45799999999999999999999999999996 444321000 0 000000000000010 0111 23444444432
Q ss_pred --CCCCCCHH---HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 162 --LYPHLTVR---ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 162 --l~~~lTV~---E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
+.|..+|. |...+...+. ......++ .+.++.++|.+ ..+ ..++.||||||||++||++|+.+
T Consensus 87 ~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 87 TSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLS-----RSAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred CCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCccccc-----CccCcCCHHHHHHHHHHHHHHhC
Confidence 23444554 2222211111 11222233 46789999975 233 44568999999999999999999
Q ss_pred C--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEec
Q 005754 236 P--SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFG 300 (679)
Q Consensus 236 P--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G 300 (679)
| +++||||||+|||+.++..+.+.|++++++|.|||++||++. .+ ++||++++| ++|+++++|
T Consensus 156 p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 156 LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 8 599999999999999999999999999888999999999975 34 699999999 899999876
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=2.3e-31 Score=310.38 Aligned_cols=214 Identities=22% Similarity=0.283 Sum_probs=150.9
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc-----cc-----
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP-----TK----- 147 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~-----~~----- 147 (679)
.+..+++++.|+++.+|+|+||+|++|+++||+|||||||||||++|+|+.....+..|+|.+.++.. +.
T Consensus 177 ~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~ 256 (718)
T PLN03073 177 DIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVL 256 (718)
T ss_pred eEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHH
Confidence 35667888888888899999999999999999999999999999999996421112345555432210 00
Q ss_pred --------cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHH-------------------HHHHHHHHHHHHc
Q 005754 148 --------HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTK-------------------EKTSIAEAVMAEL 200 (679)
Q Consensus 148 --------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~-------------------~~~~~v~~~l~~l 200 (679)
..++.+++++|++.+... ++.++...... ...+.. ..++++.+++..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l 331 (718)
T PLN03073 257 NTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANK----DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL 331 (718)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccc----cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 011224555554322111 11111100000 000111 2334566777788
Q ss_pred CCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 201 GLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 201 gL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
|+. +..++ .+..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||+. .
T Consensus 332 gl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~-~ 402 (718)
T PLN03073 332 SFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAR-E 402 (718)
T ss_pred CCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCH-H
Confidence 885 33333 34579999999999999999999999999999999999999999999886 68999999995 4
Q ss_pred HHHHhCCeEEEEeCCeEE-EecChhhH
Q 005754 280 RVYQMFDKVLVLSEGRCL-YFGKGSEA 305 (679)
Q Consensus 280 ~i~~~~D~v~lL~~G~iv-~~G~~~~~ 305 (679)
.+..+||++++|++|++. |.|+.++.
T Consensus 403 ~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 403 FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 578899999999999996 67776543
No 366
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.8e-29 Score=260.94 Aligned_cols=196 Identities=27% Similarity=0.369 Sum_probs=150.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-----cCc-----CCCC--------CeeeEEEECCCCccccccC-
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-----GRL-----HQGH--------GLTGTILTNNNKPTKHISK- 151 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~-----G~~-----~~~~--------~~~G~i~~~g~~~~~~~~~- 151 (679)
..-|+|||.+|+.|++++|.|+||||||||++.+. ... .|.. ...-.+.++..++....|.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 44689999999999999999999999999998552 110 0100 0112355555443221111
Q ss_pred -----------------------------cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 005754 152 -----------------------------RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202 (679)
Q Consensus 152 -----------------------------~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 202 (679)
.+.|..++...+..+||.|++.|...++ ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 2445555655667899999999865431 12456778999999
Q ss_pred Cc-cccccccCccCcccCHHHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 203 TK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN---PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 203 ~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~---P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
.. ..+ +.++.||||||||+.||++|+.+ |++++|||||+|||+..+..+.+.|++++++|.|||+++|++.
T Consensus 159 ~~l~l~-----~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhc-----CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 233 34567999999999999999996 7999999999999999999999999999988999999999975
Q ss_pred HHHHHhCCeEEEE------eCCeEEEecCh
Q 005754 279 SRVYQMFDKVLVL------SEGRCLYFGKG 302 (679)
Q Consensus 279 ~~i~~~~D~v~lL------~~G~iv~~G~~ 302 (679)
..+.+|+++.| ++|++++.|++
T Consensus 234 --~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 --VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred --HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 34679999999 79999999974
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.9e-30 Score=240.20 Aligned_cols=192 Identities=27% Similarity=0.397 Sum_probs=160.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC--CCCc-------cc--cc-cCcEEEEec
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN--NNKP-------TK--HI-SKRTGFVTQ 158 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~--g~~~-------~~--~~-~~~i~yv~Q 158 (679)
-++|+|+||+++.||++++=||||+|||||||+|.|.+.|+ +|+|++. |... .+ +. ++.+|||.|
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ 100 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence 46999999999999999999999999999999999999875 6777764 2211 11 22 456999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
.-...|..+..|.++-...- ...+.+..+.++.+++.+|++.+..-.+ .+.+.||||||||.|||.++.+=+|
T Consensus 101 FLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaRgfivd~pI 173 (235)
T COG4778 101 FLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIARGFIVDYPI 173 (235)
T ss_pred HHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhhhhhccCce
Confidence 98888888877776654432 2456777888899999999998754432 3668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
|+|||||++||..++..++++|++-+.+|..+|=+-|| .+--...+||++-+..
T Consensus 174 LLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 174 LLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred EEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 99999999999999999999999998899999999999 4434678999998864
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=6.9e-30 Score=239.08 Aligned_cols=133 Identities=45% Similarity=0.749 Sum_probs=118.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCHH
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
|+|||+++++||+++|+|+||||||||+++|+|..++ .+|.|.++|.+... ..++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999999999999999875 58999999877643 4567899999999999999999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
|| ...++++++++.+++.+..++.++. ....||||||||++||+||+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 98 2334588899999998877777754 347899999999999999999999999999996
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=3.4e-29 Score=300.49 Aligned_cols=191 Identities=27% Similarity=0.467 Sum_probs=161.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
.+.|+|||++|++|+++||+||-|||||+||.+|.|..+. .+|++.++|. ++||+|++-++.. ||||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs---------iaYv~Q~pWI~ng-Tvre 600 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS---------VAYVPQQPWIQNG-TVRE 600 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe---------EEEeccccHhhCC-cHHH
Confidence 3489999999999999999999999999999999998874 5889999875 8999999998875 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
||.|+..+ . +++-+++++...|. ..-.|.||++ .-.||||||||+++|||+-++.+|+|||.
T Consensus 601 NILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGEr-GinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 601 NILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIGER-GINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred hhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceecCC-ccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 99997432 2 23344555554443 3445778865 44699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|.|++|++...++.+..-+..-+++|+|++|||. +....+|+|++|++|++...|+.+|..+
T Consensus 670 plSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 9999999999999877665445689999999985 4688999999999999999999999873
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4.1e-29 Score=299.79 Aligned_cols=201 Identities=27% Similarity=0.394 Sum_probs=167.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
..+|||||++|+|||.+||+|..|||||||+++|-++..| .+|+|.+||.++.+ .+|++++.+||||.+|.+
T Consensus 1153 p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~---~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG- 1228 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP---AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG- 1228 (1381)
T ss_pred cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc---cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-
Confidence 4699999999999999999999999999999999999875 47999999988754 679999999999999987
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIA-----EAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|||+||.-.. ..++++..+.. .+.++ .++...|+.+.+ ....+|-||||.+++||||+++++||+|
T Consensus 1229 TvR~NLDPf~------e~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1229 TVRFNLDPFD------EYSDDEIWEALERCQLKDVVS--SLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred ccccccCccc------ccCHHHHHHHHHHhChHHHHh--hCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 9999985211 22333332222 12222 333445666653 4567999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||.|++.|+++-..|.+.||+--+ ++|||.+-|+.+. +. -+|||+||++|+++++|+|.+.++
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-Vm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-VM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-hh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 999999999999999999998543 7999999999875 55 489999999999999999998864
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=5.9e-29 Score=247.96 Aligned_cols=166 Identities=17% Similarity=0.240 Sum_probs=129.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC------CeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCC
Q 005754 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH------GLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 95 ~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~------~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lT 167 (679)
+++++++++| +++|+||||||||||+++|+|+..+.. ...|++.++|..... ..++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999999875431 123467666665422 2356899999998765
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh----hCCCeEEEeC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML----INPSLLILDE 243 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~P~lllLDE 243 (679)
|.. . ..++++++++. .+..+ ..+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~-----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKV-----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCccc-----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12345666666 33333 345679999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
||+|||+..+..+.+.|+++++ +.|||++||++. ..+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999999999999999865 689999999974 3578999999974
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=268.92 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=162.8
Q ss_pred CCccCCCCccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEE
Q 005754 76 TSSTDDQGSTAKIQE-RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTG 154 (679)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~ 154 (679)
......+++++.|++ +.+++++||.|.+|+.+||+||||+|||||||+|+|...|. +|.|.+.- .-++|
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~-------~v~ig 388 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGE-------TVKIG 388 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCC-------ceEEE
Confidence 345566777778855 68999999999999999999999999999999999988763 78777642 23589
Q ss_pred EEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHH
Q 005754 155 FVTQDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 155 yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
|..|+. .+.+..|+.|++.-.. +. ..+..+...|..+++... ..+ .++.||||||.|+.+|+.+
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~----~~-----~~e~~~r~~L~~f~F~~~~~~~-----~v~~LSGGEk~Rl~La~ll 454 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGF----PD-----GDEQEVRAYLGRFGFTGEDQEK-----PVGVLSGGEKARLLLAKLL 454 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhC----cc-----ccHHHHHHHHHHcCCChHHHhC-----chhhcCHhHHHHHHHHHHh
Confidence 999986 4457889999886321 11 114567889999999742 233 4557999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEe-cChhhHH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF-GKGSEAM 306 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~-G~~~~~~ 306 (679)
+.+|.+|||||||+.||..+...+.+.|.+. .-|||++|||. ..+-+++++++.+.+ ++..+ |.-++..
T Consensus 455 ~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred ccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999999999999999999876 46999999994 568999999999998 55444 7655543
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.9e-27 Score=259.51 Aligned_cols=201 Identities=26% Similarity=0.436 Sum_probs=171.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecC---CCCCC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQD---DILYP 164 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~---~~l~~ 164 (679)
.++|+||++++||+++|.|-=|||+|-|+++|.|..++ .+|+|.++|++.. ...+..++|||.| ..++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 58999999999999999999999999999999996553 4899999998643 2456789999987 46899
Q ss_pred CCCHHHHHHHHhhhcCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 165 HLTVRETLVFCSLLRLP-R-TLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
.++|.||+.++...+.. . ..+....++.+++..+.+++.. ..+. .+..||||.||||.|||.|..+|++|||
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~-----~v~~LSGGNQQKVvlarwL~~~p~vLil 425 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ-----PIGTLSGGNQQKVVLARWLATDPKVLIL 425 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc-----hhhcCCchhhhhHHHHHHHhcCCCEEEE
Confidence 99999999887332221 1 3556666778899999998853 2223 4557999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
||||.|.|.-++.+|.++|++++++|++||++|.+. +|+..+||||++|++|+++..=+.
T Consensus 426 DEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 426 DEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred CCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999999995 579999999999999999874433
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=6.1e-29 Score=233.84 Aligned_cols=196 Identities=30% Similarity=0.449 Sum_probs=167.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV 168 (679)
-|-.+|+++..||++-++|||||||||||-.++|+.+ .+|+|.++|.+... ++.|.-+|..|+..-...|.|
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~----~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC----CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 4678999999999999999999999999999999986 38999999988643 456777899888766666889
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-----hCC--CeEEE
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-----INP--SLLIL 241 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-----~~P--~lllL 241 (679)
..++... . +.++....++++.+.++|++... +.++.|||||-|||-+|...+ .|| ++|++
T Consensus 90 ~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~-----Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 90 WHYLTLH----Q----PDKTRTELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred hhhhhhc----C----chHHHHHHHHHHHhhhcccchhh-----hhhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 8887642 2 34566667888999999987554 345689999999999997665 355 69999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||.++||...+..+-..|.+++.+|.+||++.||.+. ..+.+|++++|++|+++..|..+|++
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999999999999999999999875 78899999999999999999998874
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.7e-27 Score=244.84 Aligned_cols=190 Identities=18% Similarity=0.324 Sum_probs=133.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC----------------cCCCCC---eee--EEEECCCCc
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR----------------LHQGHG---LTG--TILTNNNKP 145 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~----------------~~~~~~---~~G--~i~~~g~~~ 145 (679)
.|+++.++++++ |++++|+|||||||||||++|++. +.++.+ ..+ ++.+++.+.
T Consensus 11 sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 11 SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCC
Confidence 466777888887 789999999999999999999843 222211 122 344444211
Q ss_pred -------cccccCcEEEEecCCCCCC-CCCHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCccCc
Q 005754 146 -------TKHISKRTGFVTQDDILYP-HLTVRETLVFCSLLRLPRTLST-KEKTSIAEAVMAELGLTKCENTIIGNSFIR 216 (679)
Q Consensus 146 -------~~~~~~~i~yv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 216 (679)
....++.++|++|+..+++ ..|..|...+............ .....++ .+.+++.+..+ ..++
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~-----~~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQ-----QEMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhcccccc-----cccc
Confidence 1135677999999887776 4677776666554332211000 0001122 23344443333 3456
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 217 GISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++|||+++|++ ++.++||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 799999999999999974 5899999999999999999999999999866 78999999984 4789999999986
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.9e-28 Score=247.10 Aligned_cols=181 Identities=16% Similarity=0.213 Sum_probs=135.7
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~l 166 (679)
.|+++.+++++++ ++++|+||||||||||+++|.-. +|.+.....++++++++|+..+++.+
T Consensus 13 ~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 13 SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhHHHHhcCCCCCCCC
Confidence 5677889999987 79999999999999999999721 22221111235689999998888999
Q ss_pred CHHHHHHHHhhhcCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh----C
Q 005754 167 TVRETLVFCSLLRLP-----RTLSTKEKTS--IAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI----N 235 (679)
Q Consensus 167 TV~E~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~----~ 235 (679)
|++|++.+....... .....++... ..+++++.++|.+..++.+ +.||+|||||++||++++. +
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~ 149 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKP 149 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCC
Confidence 999987665432100 0011111110 1255667778877666544 4699999999999999974 4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
|+++++||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.++||++++|..
T Consensus 150 p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 150 TPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 799999999999999999999999999864 67888888985 57899999999974
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1.6e-26 Score=239.15 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=134.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCC-Cc-c-----ccccCcEEEEecCC---------CCCCCCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN-KP-T-----KHISKRTGFVTQDD---------ILYPHLT 167 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~-~~-~-----~~~~~~i~yv~Q~~---------~l~~~lT 167 (679)
..+++|+||||||||||+++|++.+.+. ..|++...+. +. . ......+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 3499999999999999999999987642 1244554443 11 0 11234799999985 3456789
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCccCcccCHHHHHHHHHHHHH
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT---------------IIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
|.+++......+.... .++...+++.++|+.+|+...... ...+..++.||||||||++||++|
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 9988865432110000 122334678889999998621000 112345678999999999999999
Q ss_pred h----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 233 L----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 233 ~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+ .+|+++++||||+|||+.++..+.+.|+++. +|.|||++||++ ++.+.+|+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 4789999999999999999999999999985 489999999994 5788999999876
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=5.4e-25 Score=270.86 Aligned_cols=138 Identities=28% Similarity=0.359 Sum_probs=112.3
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHh---hCCC
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEML---INPS 237 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~---~~P~ 237 (679)
.+...||.|+|.+...-........++..+++ ++|+.+||.+. .+.. +.+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999886542211112234455566 47899999864 4443 4579999999999999998 6999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe------CCeEEEecChhhHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS------EGRCLYFGKGSEAMS 307 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 307 (679)
++||||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999988999999999975 45 8999999996 799999999988653
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=1.1e-25 Score=225.68 Aligned_cols=164 Identities=19% Similarity=0.293 Sum_probs=122.7
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHh----cCcCCCCCeeeEEEECCCCcc-ccccCcEEEEecCC-----CCCCCC
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLA----GRLHQGHGLTGTILTNNNKPT-KHISKRTGFVTQDD-----ILYPHL 166 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~----G~~~~~~~~~G~i~~~g~~~~-~~~~~~i~yv~Q~~-----~l~~~l 166 (679)
.++++.+| +++|+|||||||||||++|. |...++ .|.+..+..... ...+..+++++|++ .....+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34567788 99999999999999999995 776543 233221111111 13345799999987 344556
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH------HHHHHHHhhCCCeEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR------VSIAHEMLINPSLLI 240 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~IA~aL~~~P~lll 240 (679)
|+.|++.+. +..+ +++.+ ++.++.||+||||| ++||++++.+|++++
T Consensus 92 ~~~~~~~~~---------~~~~----~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 92 AILENVIFC---------HQGE----SNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hHhhceeee---------chHH----HHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 888888542 1111 22222 23355799999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 241 LDEPTSGLDSTAAY-RLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 241 LDEPtsgLD~~~~~-~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
+||||++||+.++. .+.+.|++++++ |.|||++||++. ....+|+++.|.+
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 99999999999999 999999999876 899999999964 4578999999964
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=2.6e-25 Score=224.56 Aligned_cols=179 Identities=18% Similarity=0.145 Sum_probs=122.9
Q ss_pred eceEEEEe-CCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCC-C-c-cccccCcEEEEecCCCCCCCCCHHH
Q 005754 95 NGITGMVS-PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN-K-P-TKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 95 ~~vs~~i~-~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~-~-~-~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
++++|... +|++++|+|||||||||||++|++.+... ..+....+.. . . .......+++++|++.... ++..
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r 93 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVER 93 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEE
Confidence 55666543 58999999999999999999999644211 1122221100 0 0 1123456899999863211 1111
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh----------CCCeEE
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI----------NPSLLI 240 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~----------~P~lll 240 (679)
.. ..+..+..+.+ .++..++.+..+ ..++.||||||||++||++|+. +|++++
T Consensus 94 ~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ll 156 (213)
T cd03279 94 SR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALF 156 (213)
T ss_pred ec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEE
Confidence 10 12222222211 123333433333 3456799999999999999985 578999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|||||+|||+.++..+.+.|++++++|.|||++||++. .+...+|+++++++|.
T Consensus 157 lDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 157 IDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999999999999999999999877999999999975 5788999999999875
No 381
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=2.9e-24 Score=231.49 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=175.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc----cc--cccCcEEEEecCC---C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP----TK--HISKRTGFVTQDD---I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~----~~--~~~~~i~yv~Q~~---~ 161 (679)
...+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. +. ..+..++|||.|. .
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~G 347 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHG 347 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCHHHHHhcCCccCChhhccCc
Confidence 45789999999999999999999999999999999998652 59999999874 11 2345799999985 5
Q ss_pred CCCCCCHHHHHHHHhhhcC----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 162 LYPHLTVRETLVFCSLLRL----PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
+.+.+|+.||+.+...-+. .........++.++++++++++..... ....+.||||++||+-+||+|..+|+
T Consensus 348 lv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a~~LSGGNqQK~IlaREl~~~p~ 423 (501)
T COG3845 348 LVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPARSLSGGNQQKLILARELARRPD 423 (501)
T ss_pred cccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----CcchhhcCCcceehhhhhhhhccCCC
Confidence 7889999999987654321 112456777888999999999873211 12356799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+|++.+||.|||..+.+.|.+.|.+.+++|+.|++++-+. +++++++|||.+|.+|+++...++++
T Consensus 424 lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 424 LLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred EEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCceeccccccc
Confidence 9999999999999999999999999999999999999996 57999999999999999998887765
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=243.43 Aligned_cols=181 Identities=30% Similarity=0.441 Sum_probs=145.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+..|++.++.+++||.+.|.||||||||||+|+|+|+.+.. +|+|... ....+-|+||.|.+... |.+|
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P-------~~~~~lflpQ~PY~p~G-tLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP-------ADSALLFLPQRPYLPQG-TLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC-------CCCceEEecCCCCCCCc-cHHH
Confidence 47899999999999999999999999999999999999753 4665443 12347899999998776 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD 249 (679)
-+.|.... ++ -..+.+.++|.++||++..++.=+ ++--+.||+|||||+++||.|+++|++++|||.|++||
T Consensus 475 ~l~YP~~~------~~-~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 475 ALCYPNAA------PD-FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHhCCCCC------CC-CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 99874321 11 223457788999999886654322 12356799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 250 STAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 250 ~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+.++..+++.|++-. .+.|||-+.|++. +..+.++.+-+.
T Consensus 548 e~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 999999999998732 3799999999964 567777766554
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=6.7e-24 Score=251.73 Aligned_cols=125 Identities=30% Similarity=0.427 Sum_probs=105.5
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCC---CeEEE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINP---SLLIL 241 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P---~lllL 241 (679)
+||.|++.|...+. + ..+..+.|+.+||... .+. .+..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998865431 1 1234578999999752 333 34579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+++.|+++.++|.|||+++|++. .+ ..+|+++.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999888999999999975 34 689999999 689999999998764
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=7.7e-25 Score=228.51 Aligned_cols=188 Identities=24% Similarity=0.307 Sum_probs=151.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV 168 (679)
-+..||++|+.||++-|+|.||||||||++.|.|+.+|+ +|+|.+||++.+. +.|+-++-|+-|..+|+.+--
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~ 414 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG 414 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC
Confidence 467899999999999999999999999999999999974 7999999998753 456667777877777765322
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
.|+ . ...+.++..|+++.|.+...-.=|+-..-.||.|||||+++-.||+-+-+|+++||=.+--
T Consensus 415 ~e~------------~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQ 479 (546)
T COG4615 415 PEG------------K---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQ 479 (546)
T ss_pred Ccc------------C---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccC
Confidence 221 0 1234567788888776643222122234579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH-HHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 249 DSTAAYRLVSTLGS-LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 249 D~~~~~~i~~~L~~-l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||.-++.+.+.+-- ++++|+||+.+|||. .-|..+||++.+++|++++.-
T Consensus 480 DPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 480 DPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred ChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 99999999887765 466799999999995 368999999999999998754
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=5.8e-23 Score=243.39 Aligned_cols=125 Identities=29% Similarity=0.415 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhh---CCCeEE
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLI---NPSLLI 240 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~---~P~lll 240 (679)
.+||.|.+.|...+. ...+..++|+.+||... .+ +.+++||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~-----~~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhc-----CccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467888887764321 01134578889999752 33 3456799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 305 (679)
|||||+|||+..+..+++.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999888999999999975 34 679999999 78999999998764
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=227.71 Aligned_cols=212 Identities=23% Similarity=0.318 Sum_probs=141.8
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEec
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q 158 (679)
+...+++..+.++.+++|++|++.+|+-++|+|+|||||||+|++|+|+..|.....+.-.++ +.......+.+-+|.+
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~av~~v~~ 154 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQAVQAVVM 154 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHHHHHHHhh
Confidence 345566777888999999999999999999999999999999999999988743322221221 1111110111111110
Q ss_pred CCCCCCCCCHHHHHHHHh-hh-----------------cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccC
Q 005754 159 DDILYPHLTVRETLVFCS-LL-----------------RLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGIS 219 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~-~~-----------------~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 219 (679)
. .-..+.-+.+.. .+ |. ..+.....+.++..+|..+|-. +..+ +.+.++|
T Consensus 155 ~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~~-----k~~~~~S 223 (614)
T KOG0927|consen 155 E-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQD-----KKVKDLS 223 (614)
T ss_pred h-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHHH-----HHhhccC
Confidence 0 000000010000 00 00 0122233344556666666654 3333 3456799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe-EEE
Q 005754 220 GGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR-CLY 298 (679)
Q Consensus 220 gGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~-iv~ 298 (679)
||+|+|+++||+|..+|++|+|||||+|||..+..-+-+.|.+..+ + ++|+++|. .+.+-..|.+|+-|.+++ +.|
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHS-QDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecc-hhhhhhHhhhhheecccceeee
Confidence 9999999999999999999999999999999999999988876532 1 89999998 556889999999999999 456
Q ss_pred ecChhhH
Q 005754 299 FGKGSEA 305 (679)
Q Consensus 299 ~G~~~~~ 305 (679)
.|+-++-
T Consensus 301 ~Gnydqy 307 (614)
T KOG0927|consen 301 EGNYDQY 307 (614)
T ss_pred cCCHHHH
Confidence 6776553
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=4.5e-23 Score=205.85 Aligned_cols=169 Identities=19% Similarity=0.181 Sum_probs=120.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCCCCCCCCCH
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
++++++++.+| +.+|+|||||||||||.+|........... ..|.... ......+.+++|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~----~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDT----NRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccc----cccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 46788888888 889999999999999999975332111000 0111100 0113457888887665541
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH----hhCCCeEEEeCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM----LINPSLLILDEP 244 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL----~~~P~lllLDEP 244 (679)
... ...++.++++++. .+..++ .++.||+|||||++||++| +.+|++++||||
T Consensus 84 --------------~~~-~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 --------------PLC-VLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred --------------cCC-HHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 011 1123456677766 443443 4557999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR---GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~---g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|+|||+.++..+.+.|+++.++ +.|||+++|++. ++.+ +|+|.+|..++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence 9999999999999999998653 469999999976 4655 59999998754
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=3.6e-23 Score=199.98 Aligned_cols=211 Identities=23% Similarity=0.314 Sum_probs=163.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC-eeeEEEECCCCc---c-cc----ccCcEEEEecCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG-LTGTILTNNNKP---T-KH----ISKRTGFVTQDD 160 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~-~~G~i~~~g~~~---~-~~----~~~~i~yv~Q~~ 160 (679)
..+++++||+++..||+-+++|.||||||-..|+|.|..+..=. +.....+++.+. + ++ ..+.|+++||++
T Consensus 19 ~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP 98 (330)
T COG4170 19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCc
Confidence 45689999999999999999999999999999999998763111 111223333221 1 11 234688999998
Q ss_pred C--CCCCCCHHHHHHHHhhhcCCCCC-------CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 161 I--LYPHLTVRETLVFCSLLRLPRTL-------STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 161 ~--l~~~lTV~E~l~~~~~~~~~~~~-------~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
. +-|.-+|...|--. .|... .-..+++++-++|.++|+.+..| +-..++.+|.-||-|+|.||.|
T Consensus 99 ~sCLDPS~~iG~QlIq~----IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--IM~SYP~ElTeGE~QKVMIA~A 172 (330)
T COG4170 99 QSCLDPSERVGRQLIQN----IPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--IMRSYPYELTEGECQKVMIAIA 172 (330)
T ss_pred hhhcChHHHHHHHHHhh----CccccccchHhhhhchhHHHHHHHHHHhccccHHH--HHHhCcchhccCcceeeeeehh
Confidence 5 44444444333211 11110 11234567888999999998777 4556889999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
++.+|++|+.||||+.+|+.++.++..+|.++.+ +|.||++++||.. .+-+.||++-+|.=|+-++.++.+++++
T Consensus 173 ~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 173 LANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999975 5999999999975 5899999999999999999999888754
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=214.17 Aligned_cols=188 Identities=22% Similarity=0.305 Sum_probs=145.7
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
..++-.+++.+++ .-|+-=.++|..||+++++||||-||||+.++|+|.++|+. |. ...-+++|=|
T Consensus 342 lv~y~~~~k~~g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~----------~~~~~vSyKP 407 (591)
T COG1245 342 LVEYPDLKKTYGD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS----------EEDLKVSYKP 407 (591)
T ss_pred eeecchheeecCc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----------CccceEeecc
Confidence 3455556666663 34555567778889999999999999999999999999864 32 1123578888
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|.-.--...||++.+.-...-+... .....++++-|+|+...+..+. +|||||.|||+||.+|..+++
T Consensus 408 QyI~~~~~gtV~~~l~~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 408 QYISPDYDGTVEDLLRSAIRSAFGS-------SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred eeecCCCCCcHHHHHHHhhhhhccc-------chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccC
Confidence 8754445679999886543221111 1223567888899887766554 699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+++||||++.||.+.+..+-+.|++... .++|.+++.||.. .+--++||+++.+
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 9999999999999999999999999986 4899999999965 3666889998875
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=2.7e-23 Score=224.93 Aligned_cols=199 Identities=22% Similarity=0.297 Sum_probs=151.6
Q ss_pred ccCCCCcccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEE
Q 005754 78 STDDQGSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFV 156 (679)
Q Consensus 78 ~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv 156 (679)
.+.+.+.+..|.++ .++++++|-|+.++.+|++||||+|||||||++.|.+.|. .|.+.-.- ..++++-
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~-------H~~~~~y 458 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHS-------HNKLPRY 458 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccccccc-------cccchhh
Confidence 34455666667655 6999999999999999999999999999999999999874 45443221 2223444
Q ss_pred ecC--CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 157 TQD--DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 157 ~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
.|. +.+--+.++-|++.-.. +.....+.+..+|.++||....+ +...+.||+|||+||..|+.++.
T Consensus 459 ~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q----~~p~~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 459 NQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQ----VVPMSQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccc----ccchhhcccccchhHHHHHHHhc
Confidence 443 23333567777764211 11234456788999999984333 23455799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE-EecCh
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL-YFGKG 302 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv-~~G~~ 302 (679)
.|.+|+|||||+|||..+...+-+.|.+. ..+||+++||-. -|-++++++++..+|.+. +.|..
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999998875 458999999965 588999999999987764 55643
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=7e-23 Score=211.49 Aligned_cols=180 Identities=15% Similarity=0.194 Sum_probs=118.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC--------CCcc---ccccCcEEEEecCCCC-CCCCCHH
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN--------NKPT---KHISKRTGFVTQDDIL-YPHLTVR 169 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g--------~~~~---~~~~~~i~yv~Q~~~l-~~~lTV~ 169 (679)
.++ +++|+|||||||||||++|++...+. .|.+..++ .... ....-.+.|..|++.. .-..+++
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 344 99999999999999999999977532 23332221 1100 0111224444443221 1011111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccC--------ccCcccCHHHHHHHHHHHHH
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT---------IIGN--------SFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~--------~~~~~LSgGerqRv~IA~aL 232 (679)
+... ..+... +....+.++++++.+|+...... .+.+ ..+..||||||||++||+++
T Consensus 97 ~~~~---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al 170 (247)
T cd03275 97 GGSS---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLF 170 (247)
T ss_pred CCce---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHH
Confidence 1110 001111 11123345688888998643211 1111 12378999999999999999
Q ss_pred hhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 233 LIN----PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 233 ~~~----P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
+.+ |+++|+||||+|||+..+..+.+.|++++++|.+||++||++ ++.+.+|++++|.+
T Consensus 171 ~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 171 AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 875 899999999999999999999999999987799999999994 46789999999974
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.85 E-value=1.2e-20 Score=205.83 Aligned_cols=188 Identities=22% Similarity=0.309 Sum_probs=144.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
..+.+|+|++|+.|+-+.|.||||||||+||++|+|+.+. ..|.+....... .+.+-||||.|.+.-. |.||
T Consensus 448 ~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~~----~~~lfflPQrPYmt~G-TLRd 519 (659)
T KOG0060|consen 448 DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDGG----PKDLFFLPQRPYMTLG-TLRD 519 (659)
T ss_pred ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccCC----CCceEEecCCCCcccc-chhh
Confidence 5688999999999999999999999999999999999874 356665432211 1458999999987555 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI------IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+.|....-. ..++....+++.+.|+.++|.|..... +--.....||+||+||++.||-+.++|++-+|||.
T Consensus 520 QvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 520 QVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred eeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 9988632111 111222345567778888877654432 11123457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
||++|......+.+.+++ .|.|.|-+.|..+ +.++=|.++-|+.
T Consensus 598 TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 598 TSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred hhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999888775 4999999999964 5676788888864
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.1e-21 Score=211.30 Aligned_cols=196 Identities=23% Similarity=0.294 Sum_probs=136.7
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC-C
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD-D 160 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~-~ 160 (679)
++.+-.||++.+|++-++.+..|..++|+|+||+|||||||+|+. |.| .+-+..++.+ --+++-. +
T Consensus 84 ~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v--~~f~veqE~~--g~~t~~~~~ 150 (582)
T KOG0062|consen 84 DNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQV--SGFHVEQEVR--GDDTEALQS 150 (582)
T ss_pred eeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCc--CccCchhhee--ccchHHHhh
Confidence 345566889999999999999999999999999999999999986 111 1111111111 1122211 1
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTK-EKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+-.+.++.+.+.--.. +... +..+...++|..+|.++-. -...+++||||=|.|+++||||..+|+||
T Consensus 151 ~l~~D~~~~dfl~~e~~------l~~~~~l~ei~~~~L~glGFt~em----q~~pt~slSGGWrMrlaLARAlf~~pDlL 220 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKE------LLAGLTLEEIYDKILAGLGFTPEM----QLQPTKSLSGGWRMRLALARALFAKPDLL 220 (582)
T ss_pred hhhccHHHHHHHHhhhh------hhccchHHHHHHHHHHhCCCCHHH----HhccccccCcchhhHHHHHHHHhcCCCEE
Confidence 22223333332221100 1111 3344455588889887532 12446689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE-EEecChhh
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC-LYFGKGSE 304 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i-v~~G~~~~ 304 (679)
||||||+.||..+..-+.+.|..+ +.|+|+++|| +..+-..|..|+.+++-++ .|.|+-++
T Consensus 221 LLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 221 LLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred eecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 999999999999999999998876 4799999999 5567788888888877665 35565444
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=4.5e-21 Score=191.78 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=110.0
Q ss_pred eeeceEEEEeCCe-EEEEECCCCCcHHHHHHHHh-cCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 93 ILNGITGMVSPGE-ILAILGPSGSGKSTMLNVLA-GRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 93 iL~~vs~~i~~Ge-~~allGpnGsGKSTLL~~L~-G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
-+-++|+++.+|+ +++|.||||||||||||+|+ +.+.+. .| ......-...++|..|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~---~G------~~vp~~~~~~~~~~~~~~~~l------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQ---SG------LPIPAAEGSSLPVFENIFADI------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHH---cC------CCccccccccCcCccEEEEec-------
Confidence 4558999999995 89999999999999999998 221110 11 000000001233433321110
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
+..+..+ .....+|+||||++.|+++ +.+|+++++|||++|||+
T Consensus 80 ------------------------------g~~~~l~-----~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~ 123 (200)
T cd03280 80 ------------------------------GDEQSIE-----QSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDP 123 (200)
T ss_pred ------------------------------Cchhhhh-----cCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCH
Confidence 1110001 1123599999999999977 589999999999999999
Q ss_pred HHHHHHH-HHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 251 TAAYRLV-STLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 251 ~~~~~i~-~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
..+..+. ..++++.+.|.|+|++||+. ++.+++|+++.|.+|++.+.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999996 47888877799999999983 578999999999999998874
No 395
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=1.4e-20 Score=189.94 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=69.2
Q ss_pred cCcccCHHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEeCCccHHHHHhCC-
Q 005754 214 FIRGISGGERKRVSIAHEM----LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-G-KTIVTSMHQPSSRVYQMFD- 286 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL----~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tii~~tH~~~~~i~~~~D- 286 (679)
.+..||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... +.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 4568999999999877554 4799999999999999999999999999999876 5 589999999654 566776
Q ss_pred -eEEEEeCCe
Q 005754 287 -KVLVLSEGR 295 (679)
Q Consensus 287 -~v~lL~~G~ 295 (679)
++++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.83 E-value=7.6e-20 Score=176.71 Aligned_cols=197 Identities=21% Similarity=0.245 Sum_probs=146.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEec--------
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQ-------- 158 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q-------- 158 (679)
.+++-|+|++++.|..+.++|.||||||||||+|+|.--- ..|.|.++|..+-. .-.....|.--
T Consensus 27 dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv---~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ 103 (291)
T KOG2355|consen 27 DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV---GGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGI 103 (291)
T ss_pred CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc---cCCeEEEcCcCccccccccccCceeEecccccccccc
Confidence 4789999999999999999999999999999999996432 13778888865421 11112333321
Q ss_pred --CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 159 --DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 159 --~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+-.+-.+.++.+.| |+.. ... . +|-+++++.|+++-.. ..+.+|-|||+||.|+..|++.=
T Consensus 104 agevplq~D~sae~mi-fgV~-----g~d-p---~Rre~LI~iLDIdl~W-------RmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 104 AGEVPLQGDISAEHMI-FGVG-----GDD-P---ERREKLIDILDIDLRW-------RMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred cccccccccccHHHHH-hhcc-----CCC-h---hHhhhhhhheeccceE-------EEeeccccchhhhHHHHhcccce
Confidence 22233456776655 3221 111 1 3455677777765321 23469999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
++|+|||-|--||..++..+++.|++-++ +|.||+..||--. -+.....+++.|++|+++-.-+.+.+.++
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEecCCeeeeccccchhhhh
Confidence 99999999999999999999999999876 5999999999854 47788999999999999876555554443
No 397
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.83 E-value=8.1e-22 Score=195.98 Aligned_cols=205 Identities=27% Similarity=0.458 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHH-ccCchhH-HHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005754 409 NQFSILLHRSLKE-RKHESLN-TLRVFQVIAASLLSGIMWWHSDF-REVQDRLGLFFFISVFWGVLPSVNAVFAFPQERA 485 (679)
Q Consensus 409 ~Q~~~L~~R~~~~-~r~~~~~-~~r~~~~i~~~ll~G~~f~~~~~-~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~~er~ 485 (679)
+|++.+++|+++. +|++... ..+++..++.++++|.+|.+.++ .+..++.|++++.+....+....+....+..||.
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERG 80 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcc
Confidence 5999999999986 6777776 78999999999999999998764 2233678888887776654555555577889999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 005754 486 IFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDA 565 (679)
Q Consensus 486 v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~~ 565 (679)
.+.||+.++.|++.+|.+||.+.+++..++.++++.++.|++.|++.+ +|+.+++++++..+++.++|.++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 158 (210)
T PF01061_consen 81 TLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSF 158 (210)
T ss_pred ccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhh
Confidence 999999999999999999999999999999999999999999999888 677888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHh
Q 005754 566 KQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQY 615 (679)
Q Consensus 566 ~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef 615 (679)
+.+..+.+++..++++++|.++| .+|+|++|+.|+||++|++|++..++|
T Consensus 159 ~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 159 RDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999998 899999999999999999999999886
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=7e-20 Score=197.59 Aligned_cols=182 Identities=23% Similarity=0.332 Sum_probs=142.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
+++.+++..++.-+..+++|+||+||||++|++.|...|. .|.+.++ .|.+++|-.|...-+-.+.|.+.
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~-------~r~ri~~f~Qhhvd~l~~~v~~v 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRH-------PRLRIKYFAQHHVDFLDKNVNAV 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeec-------ccceecchhHhhhhHHHHHhHHH
Confidence 5889999999999999999999999999999999987753 4544443 25679999997554434455443
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
.+....+ |. ..+ +..++-+..+||+.- +....+.+||||||-||++|.....+|.+|+|||||+.||-.
T Consensus 448 -d~~~~~~-pG-~~~----ee~r~hl~~~Gl~g~----la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~d 516 (582)
T KOG0062|consen 448 -DFMEKSF-PG-KTE----EEIRRHLGSFGLSGE----LALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD 516 (582)
T ss_pred -HHHHHhC-CC-CCH----HHHHHHHHhcCCCch----hhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHH
Confidence 2323332 22 223 335566889999742 223346789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
+-..+.+.|+.. +..||++||+ .+.+..+|+.+++.++|++.-
T Consensus 517 sl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 517 SLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 999999998876 4589999999 456889999999999999864
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=2.3e-19 Score=176.07 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=68.7
Q ss_pred cCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 218 ISGGERKRVSIAHEML----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 218 LSgGerqRv~IA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 689999999999999999999999999999877899999999964 4678999999975
No 400
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=7.7e-20 Score=192.59 Aligned_cols=189 Identities=27% Similarity=0.385 Sum_probs=143.4
Q ss_pred ccCCCCccccc-cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEE
Q 005754 78 STDDQGSTAKI-QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFV 156 (679)
Q Consensus 78 ~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv 156 (679)
+....+++..| +.++.+++++|-|.--..+||+||||.||||||++|.|.+.|. .|+.. +..+-+||+.
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~R-------KnhrL~iG~F 655 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELR-------KNHRLRIGWF 655 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhh-------ccceeeeech
Confidence 34456667777 6678999999999999999999999999999999999998874 34322 2234568998
Q ss_pred ecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 157 TQDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 157 ~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
-|.. .|-..-|.-|.|.-. +. ++..+ +...|-.+||...++|. .+..||||||-||++|.--+.
T Consensus 656 dQh~~E~L~~Eetp~EyLqr~--FN----lpyq~----ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 656 DQHANEALNGEETPVEYLQRK--FN----LPYQE----ARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALG 721 (807)
T ss_pred hhhhHHhhccccCHHHHHHHh--cC----CChHH----HHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcC
Confidence 8864 344556777766421 12 23332 45578889999888874 356799999999999988889
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
.|+||||||||++||.++...+-+.|++. +..||+++||... +.+.--.++++.+-
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccC
Confidence 99999999999999999999999998876 4589999999542 44444456666543
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=3e-20 Score=197.56 Aligned_cols=174 Identities=28% Similarity=0.373 Sum_probs=127.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCe-eeEE-------EECCCCcccccc------CcEEEEecC----CCC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL-TGTI-------LTNNNKPTKHIS------KRTGFVTQD----DIL 162 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~-~G~i-------~~~g~~~~~~~~------~~i~yv~Q~----~~l 162 (679)
.++|++++|+||||-||||-+|+|+|.+.|.-|. .+.. .+.|......++ -++..=+|. +..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 5799999999999999999999999998874331 1100 011111111011 122223443 222
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+.. ||.|.|.- .+.+...+++++.++|++..|+.+ +.|||||-||++||.+++++.+++++|
T Consensus 177 ~KG-~v~elLk~------------~de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADvY~FD 238 (591)
T COG1245 177 VKG-KVGELLKK------------VDERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVYFFD 238 (591)
T ss_pred hcc-hHHHHHHh------------hhhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCEEEEc
Confidence 222 67776532 122345788999999998766554 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
||||-||...+....+.+++|++.+++||++.||.. -+--++|-|.++..
T Consensus 239 EpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 239 EPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred CCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 999999999999999999999988999999999964 35567888888863
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=1.7e-19 Score=180.24 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=107.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++.+++|+++.. |++++|+||||||||||||+|+|...- ...|.+... -.+++|.+.+++.+|+.
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a-----~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA-----SSFELPPVKIFTSIRVS 77 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec-----CccCcccceEEEeccch
Confidence 356888887775 799999999999999999999985521 112322211 13667778899999999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD 249 (679)
|++.+... ....+ .+++.++++.+++ .+|+++++|||++|||
T Consensus 78 d~l~~~~s------~~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD 119 (199)
T cd03283 78 DDLRDGIS------YFYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTN 119 (199)
T ss_pred hccccccC------hHHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCC
Confidence 99976431 11222 2557777776652 6899999999999999
Q ss_pred HHHHHHHH-HHHHHHHhCCcEEEEEeCCccHHHHHh--CCeEEEE
Q 005754 250 STAAYRLV-STLGSLVQRGKTIVTSMHQPSSRVYQM--FDKVLVL 291 (679)
Q Consensus 250 ~~~~~~i~-~~L~~l~~~g~tii~~tH~~~~~i~~~--~D~v~lL 291 (679)
+..+..+. ..++++.+.|.|+|++||++. .+... .+++..+
T Consensus 120 ~~~~~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 120 SRERQAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 99998875 478888877999999999965 34333 3444443
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=3.2e-19 Score=187.65 Aligned_cols=193 Identities=22% Similarity=0.401 Sum_probs=143.7
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-----CCeeeEEEECCCCccccccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-----HGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-----~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
++..+.....+|+|+|++++||++++|+|+|||||||||++|+|....- .+.+|.|.+.... ..+.+|
T Consensus 388 Gv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iP 460 (593)
T COG2401 388 GVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIP 460 (593)
T ss_pred cchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccC
Confidence 3344455678999999999999999999999999999999999964321 1245555442211 123445
Q ss_pred cCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 158 QDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 158 Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
-+. .-|...|+.|.+.- .+. +...+.++|++.||.+.- .-.+..+.||-|||.|+.||.++...|
T Consensus 461 ge~Ep~f~~~tilehl~s-----~tG------D~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerp 526 (593)
T COG2401 461 GEYEPEFGEVTILEHLRS-----KTG------DLNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERP 526 (593)
T ss_pred cccccccCchhHHHHHhh-----ccC------chhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCC
Confidence 432 23445677776631 111 123456789999997632 223456789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHh-CCeEEEEeCCeEE
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCL 297 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv 297 (679)
.+++.||-.|.||+.++..+.+-|.+++++ |.|.+++||+|. -+-++ -|+++++.-|++.
T Consensus 527 n~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 527 NVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred CcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 999999999999999999999999999865 999999999975 35555 6888888766654
No 404
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=2.3e-18 Score=212.85 Aligned_cols=128 Identities=21% Similarity=0.352 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC---CCeEEE
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN---PSLLIL 241 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~---P~lllL 241 (679)
.|||.|.+.|... ..+..+.-+.|..+||.... +| +...+|||||.||+-||.+|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 4678887776421 11233445678899998642 44 35667999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe------CCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS------EGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 307 (679)
||||+||++...+.+++.|++|.+.|.|||++.|++ ++.+.+|.|+-|. .|+|++.|+|+++.+
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999999996 4678899999994 489999999999854
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=8.6e-19 Score=197.64 Aligned_cols=128 Identities=30% Similarity=0.452 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC---CeEEE
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP---SLLIL 241 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P---~lllL 241 (679)
.|||.|...|.... ....+.-+.|..+||.-. ++| ....+|||||.|||-+|.+|..+. .+++|
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 47888888775421 122334456778899753 245 356689999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 307 (679)
||||+||-....+++++.|.+|.++|.|||++.|++ ++.+.+|.|+-| ..|+|++.|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999996 478999999999 3589999999999865
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.78 E-value=2.1e-19 Score=182.55 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=115.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEE-EEecCCCCCCCCCH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTG-FVTQDDILYPHLTV 168 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~-yv~Q~~~l~~~lTV 168 (679)
.+.+.+|++++.++|++++|.||||+||||||++++-.. +..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV--------------------LMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH--------------------HHHHhCCCcCcccEEEe----
Confidence 457899999999999999999999999999999998210 011222 4444322111
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH--hhCCCeEEEeCC--
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM--LINPSLLILDEP-- 244 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL--~~~P~lllLDEP-- 244 (679)
.+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 -----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~ 120 (222)
T cd03285 72 -----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGR 120 (222)
T ss_pred -----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcC
Confidence 123345556665321 346999999999999999 899999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 245 -TSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 245 -tsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|++||+.+.... .++.+.+ .|.++|++||+ .++.+++|++..+++|++...++
T Consensus 121 gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 121 GTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3355554 48999999996 46889999999999999987764
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.4e-18 Score=180.68 Aligned_cols=76 Identities=25% Similarity=0.365 Sum_probs=68.6
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 217 GISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
.||||||||+++|++++. +|+++++||||+|||+.++..+.+.|+++.+ +.|+|++||++. +...+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999997654 9999999999999999999999999999865 789999999974 568999999998
Q ss_pred CCe
Q 005754 293 EGR 295 (679)
Q Consensus 293 ~G~ 295 (679)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 753
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.77 E-value=4.2e-18 Score=164.67 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=68.1
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 217 GISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 399999999999999987 78999999999999999999999999998766899999999964 567899999986
Q ss_pred C
Q 005754 293 E 293 (679)
Q Consensus 293 ~ 293 (679)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 409
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.74 E-value=3.9e-18 Score=183.89 Aligned_cols=173 Identities=21% Similarity=0.372 Sum_probs=127.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
..+...+||.|++|-.+.|+||||||||+|.++|+|+.+. ..|.... + ...++-|+||.|.+- .-|.+|
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---y~g~L~~---P----~~~~mFYIPQRPYms-~gtlRD 563 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---YNGLLSI---P----RPNNIFYIPQRPYMS-GGTLRD 563 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---cCCeeec---C----CCcceEeccCCCccC-cCcccc
Confidence 4578999999999999999999999999999999999873 2333322 1 123489999998765 447777
Q ss_pred HHHHHhh---hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc----cCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 171 TLVFCSL---LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNS----FIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~----~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
.+-|... ++ .+..++ +..+.+|+.+.|++...+-.|-. ...-||||||||+++||.+-++|+.-+|||
T Consensus 564 QIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 564 QIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred eeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 7655321 11 012222 33556666666665444332211 223599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
.||+..+.....+.+..++ .|.+.|-+||+|+ +.++
T Consensus 639 cTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~ 674 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKY 674 (728)
T ss_pred hhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHH
Confidence 9999999988888887764 4999999999997 4544
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.74 E-value=1.6e-17 Score=197.68 Aligned_cols=136 Identities=26% Similarity=0.398 Sum_probs=109.2
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLS------TKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
+-.+||.|.+.|...+..+.... -++..++++ .|+.+||.+. .|+. +..|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~-----~~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCc-----hhhCCHHHHHHHHHHHHHhhC
Confidence 34689999999855443221000 013334454 6788898764 4544 457999999999999999999
Q ss_pred C--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 236 P--SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
| ++++|||||+|||+..+..+++.|++++++|.|||+++|++. ++ ..||+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 999999999999999999999999999888999999999975 35 569999999 899999999998864
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=3.1e-17 Score=194.85 Aligned_cols=135 Identities=27% Similarity=0.394 Sum_probs=106.1
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLST------KEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
-.|||.|.+.|...+........ .+..+++ +.|..+||... .+ +.+.+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCC
Confidence 46899999988765432210000 1112222 23667788653 33 455689999999999999999986
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 237 --SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 237 --~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
+++||||||+|||+..+..+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999988999999999964 34 589999999 899999999998864
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.72 E-value=8.4e-18 Score=168.40 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=104.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHH
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFC 175 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 175 (679)
..++++.+|++++|+|||||||||||++|++..-. ...|. .. ...+..+++..|. +..++..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~--~~~g~------~~-~~~~~~i~~~dqi---~~~~~~~d~i--- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL--AQIGC------FV-PAESASIPLVDRI---FTRIGAEDSI--- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH--HHcCC------Cc-cccccccCCcCEE---EEEecCcccc---
Confidence 34455568999999999999999999999953211 01111 10 0111233443221 1111111110
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 005754 176 SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255 (679)
Q Consensus 176 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~ 255 (679)
+ ...+.++++++| +..+.+++.+|+++++||||+|||+.....
T Consensus 86 -------------------------------~-----~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 86 -------------------------------S-----DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred -------------------------------c-----CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 0 011246666665 666678899999999999999999999888
Q ss_pred HHH-HHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 256 LVS-TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 256 i~~-~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.. .++.+.+.+.++|++||++ ++.+.++++..+..|++...++..+
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 865 4666777789999999985 4677899999999999998886544
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.5e-16 Score=166.55 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=63.1
Q ss_pred CcccCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC
Q 005754 215 IRGISGGERKRVSIAHEML---------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~ 285 (679)
.+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. . +++++|+.. .+..++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q-~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---Q-TFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---C-EEEEeCCch-hccchh
Confidence 4458999999999999985 6999999999999999999999999998753 3 455555433 466666
Q ss_pred ---CeEEEEeCCeE
Q 005754 286 ---DKVLVLSEGRC 296 (679)
Q Consensus 286 ---D~v~lL~~G~i 296 (679)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999986
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.68 E-value=1.1e-16 Score=160.37 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=98.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcE-EEEecCCCCCCCCCH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT-GFVTQDDILYPHLTV 168 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i-~yv~Q~~~l~~~lTV 168 (679)
++.+.+|+++++++|++++|+||||+||||+++++++..-- .++ .+| +.....+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--------------------a~~G~~v---pa~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--------------------AQIGCFV---PAEYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--------------------HHcCCCc---chhhcCccC
Confidence 46799999999999999999999999999999999986421 011 122 223445566
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
.|++... ++..+..+ +..+.+|+|++|+ ..+.+++++|+++++|||++|+
T Consensus 72 ~d~I~~~------------------------~~~~d~~~-----~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt 121 (204)
T cd03282 72 FNRLLSR------------------------LSNDDSME-----RNLSTFASEMSET-AYILDYADGDSLVLIDELGRGT 121 (204)
T ss_pred hhheeEe------------------------cCCccccc-----hhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence 6665321 11111111 1223699999975 4556788999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhCCcEEEEEeCCcc
Q 005754 249 DSTAAYRL-VSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 249 D~~~~~~i-~~~L~~l~~~g~tii~~tH~~~ 278 (679)
|+.....+ ...++.+.+.|.++|++||+..
T Consensus 122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 122 SSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99876665 4567778878999999999853
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2e-17 Score=174.50 Aligned_cols=210 Identities=24% Similarity=0.338 Sum_probs=145.2
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc---CCCCC---eeeEEEECCCCccc----cccC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL---HQGHG---LTGTILTNNNKPTK----HISK 151 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~---~~~~~---~~G~i~~~g~~~~~----~~~~ 151 (679)
++.+-.-.++..+.|-|+.|-.|..++|+||||-||||||+-|+.+. +|.-. -+-+|..+...... .-.+
T Consensus 268 EnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~k 347 (807)
T KOG0066|consen 268 ENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKK 347 (807)
T ss_pred eeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHH
Confidence 33344445678899999999999999999999999999999999863 22110 12233333322110 0011
Q ss_pred cEEEEecCC-----CCCCCCCHHHHHHH-HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH
Q 005754 152 RTGFVTQDD-----ILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR 225 (679)
Q Consensus 152 ~i~yv~Q~~-----~l~~~lTV~E~l~~-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 225 (679)
+...+..++ .--...|+.|-+.- +..+|.. .....+.++..+|.-||.+.- +-++....+|||=|.|
T Consensus 348 Rl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFskE----MQ~rPt~kFSGGWRMR 420 (807)
T KOG0066|consen 348 RLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSKE----MQERPTTKFSGGWRMR 420 (807)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCChh----HhcCCccccCCceeee
Confidence 222221111 11234577776643 2333321 122344567788998988753 2244556799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE-ecCh
Q 005754 226 VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY-FGKG 302 (679)
Q Consensus 226 v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~-~G~~ 302 (679)
|++||||...|.+|.|||||+.||..+...+-+.|..+. +|.++++||-. .+-..|..|+.|++-++-| .|.-
T Consensus 421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhhhhhhhhhcchH
Confidence 999999999999999999999999999999988888875 59999999955 5888999999999877754 4543
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.63 E-value=1.3e-15 Score=154.08 Aligned_cols=157 Identities=21% Similarity=0.168 Sum_probs=108.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++.+.+|+++..++ ++++|.||||||||||||++++..-. +..| .... ..+..++++.| +++.+++.
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~~g------~~vp-~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQIG------SFVP-ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hccC------Ceec-cccceecceee---EeccCCch
Confidence 35689999999987 99999999999999999999875421 1111 1111 11345777765 56777777
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH--HHHHHHHHHHHHhhCCCeEEEeCC---
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG--GERKRVSIAHEMLINPSLLILDEP--- 244 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~IA~aL~~~P~lllLDEP--- 244 (679)
|++..+ .|. .|+++++-+...+.+|++++||||
T Consensus 84 ~~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~g 121 (216)
T cd03284 84 DDLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRG 121 (216)
T ss_pred hhhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 776432 111 123333333344579999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+++|.... ....++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++
T Consensus 122 t~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 122 TSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 888887552 23455555665 89999999994 57889999888888998877766554
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.56 E-value=7.5e-15 Score=152.83 Aligned_cols=139 Identities=22% Similarity=0.273 Sum_probs=94.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 179 (679)
.-++|+||||||||||+++|+|.++++ +|++.++|++.. .++.+.+++++|++ +.+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 578999999999999999999999863 789999987653 23444567788864 334455544321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 005754 180 LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259 (679)
Q Consensus 180 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~ 259 (679)
+.+ | ........+|+++++|||++ .+.+..+
T Consensus 182 ------k~~--------------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 182 ------KAE--------------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ------HHH--------------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 000 0 12223336999999999974 3344445
Q ss_pred HHHHHhCCcEEEEEeCCccHH-H-----------HHhCCeEEEEeCCeEEEecChhhH
Q 005754 260 LGSLVQRGKTIVTSMHQPSSR-V-----------YQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 260 L~~l~~~g~tii~~tH~~~~~-i-----------~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++.+ ++|.++|+++|++..+ + ..+|||+++|++|+ ..|+++++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 5554 4699999999985431 2 26689999999887 55655543
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.56 E-value=2.9e-14 Score=151.04 Aligned_cols=178 Identities=26% Similarity=0.372 Sum_probs=134.0
Q ss_pred ccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 90 ERTILNGITGMVSPG-----EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 90 ~~~iL~~vs~~i~~G-----e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
.+.-+.+..+.|+.| |++..+|.||-||||++++++|+++|+.+ |++- .-.++|=||.-.-=.
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~--~e~p----------~lnVSykpqkispK~ 415 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG--GEIP----------VLNVSYKPQKISPKR 415 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc--Cccc----------ccceeccccccCccc
Confidence 355677888888877 57899999999999999999999987532 2221 224677788754434
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.-||++.+.-- .| +.-...+-+.++++-|.+++..|.. +.+|||||.|||++|..|-..+++++.|||
T Consensus 416 ~~tvR~ll~~k--Ir-----~ay~~pqF~~dvmkpL~ie~i~dqe-----vq~lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 416 EGTVRQLLHTK--IR-----DAYMHPQFVNDVMKPLQIENIIDQE-----VQGLSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred cchHHHHHHHH--hH-----hhhcCHHHHHhhhhhhhHHHHHhHH-----hhcCCchhhHHHHHHHhcCCCCceEEecCc
Confidence 56899877531 11 0111224467788888888766544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 245 TSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
.+-||++.+..--+.+++.. +.++|-.++.||.-- .--++|||++..
T Consensus 484 sAylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 484 SAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred hhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 99999999999999998864 568899999999532 234788888754
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.51 E-value=1.2e-14 Score=143.63 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=58.3
Q ss_pred cccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV-STLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+..
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 358888777444332 34599999999999999999887775 556777774 89999999996 47788876444444
Q ss_pred CeEEE
Q 005754 294 GRCLY 298 (679)
Q Consensus 294 G~iv~ 298 (679)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 44433
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.47 E-value=1.7e-12 Score=141.35 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=65.7
Q ss_pred CcccCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC
Q 005754 215 IRGISGGERKRVSIAHEML---------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~ 285 (679)
...+|+||+|++.||+.|+ .+|+|++||||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhh
Confidence 3569999999999999886 699999999999999999999999998764 457899999854 344443
Q ss_pred --CeEEEEeCCeE
Q 005754 286 --DKVLVLSEGRC 296 (679)
Q Consensus 286 --D~v~lL~~G~i 296 (679)
++++.+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57899999987
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.45 E-value=4.3e-14 Score=143.18 Aligned_cols=88 Identities=27% Similarity=0.438 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005754 191 SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266 (679)
Q Consensus 191 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 266 (679)
+.+.+.+...++... .+|||||.+++||.-|+ ...++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 345556666655432 69999999999997663 45689999999999999999999999999875
Q ss_pred CcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 267 GKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 267 g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+.-+|++||++ .+++.+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999995 4789999988764
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=5.5e-13 Score=134.74 Aligned_cols=131 Identities=26% Similarity=0.273 Sum_probs=87.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--cCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC-CCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR--LHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP-HLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~--~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~-~lT 167 (679)
+.+-+|+++.=..+.+++|.||||+|||||||.++.. +. ..|..... . .-.++|..|....+. ..+
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la----~~G~~v~a-----~--~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA----HIGSFVPA-----D--SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH----hCCCeeEc-----C--CcEEeeeeeeeeeeCCccC
Confidence 3455666654222389999999999999999999842 22 12322211 0 223667666422111 111
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccC--HHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGIS--GGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+.+ ++| .-|-||++++++++.+|+++|+|||+
T Consensus 85 i~~----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~ 118 (213)
T cd03281 85 VSS----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFG 118 (213)
T ss_pred hhh----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEecccc
Confidence 111 122 33679999999999999999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHhC---CcEEEEEeCCcc
Q 005754 246 SGLDSTAAYRL-VSTLGSLVQR---GKTIVTSMHQPS 278 (679)
Q Consensus 246 sgLD~~~~~~i-~~~L~~l~~~---g~tii~~tH~~~ 278 (679)
+|+|+.....+ ...++++.++ +.++|++||++.
T Consensus 119 ~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 119 KGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 99999765555 5688888764 358999999964
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.43 E-value=3.3e-13 Score=159.16 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=94.0
Q ss_pred ccceeec-----eEEEEeCC-eEEEEECCCCCcHHHHHHHHhcC-cCCCCCeeeEEEECCCCccccccCcEEEEecCCCC
Q 005754 90 ERTILNG-----ITGMVSPG-EILAILGPSGSGKSTMLNVLAGR-LHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL 162 (679)
Q Consensus 90 ~~~iL~~-----vs~~i~~G-e~~allGpnGsGKSTLL~~L~G~-~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l 162 (679)
.++++++ +|+.+.+| ++++|.||||+|||||||+|+|. +.+ ..| ..........++|..|...
T Consensus 302 rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G------~~Vpa~~~~~~~~~d~i~~- 371 (771)
T TIGR01069 302 RHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF---QSG------IPIPANEHSEIPYFEEIFA- 371 (771)
T ss_pred cCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH---HhC------CCccCCccccccchhheee-
Confidence 3456654 78888887 99999999999999999999987 221 111 1100000011222222100
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
..... + .+. ...+.+|+|+++++.|++.+ .+|+++|+|
T Consensus 372 --------------------~i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlD 409 (771)
T TIGR01069 372 --------------------DIGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFD 409 (771)
T ss_pred --------------------ecChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEec
Confidence 00000 0 011 01235999999999998776 889999999
Q ss_pred CCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEeCCcc
Q 005754 243 EPTSGLDSTAAYRL-VSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 243 EPtsgLD~~~~~~i-~~~L~~l~~~g~tii~~tH~~~ 278 (679)
||++|+|+.....+ ..+|+.+.+.|.++|++||+..
T Consensus 410 E~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 410 ELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99999999999999 5788888888999999999964
No 424
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.38 E-value=1e-10 Score=119.85 Aligned_cols=216 Identities=15% Similarity=0.177 Sum_probs=146.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHhcCC---C--chhHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHh
Q 005754 422 RKHESLNTLRVFQVIAASLLSGIMWWHS---D--FREVQD----RLGLFFFISVFWGVLPSVNAVFA-FPQERAIFMKER 491 (679)
Q Consensus 422 ~r~~~~~~~r~~~~i~~~ll~G~~f~~~---~--~~~~~~----r~g~lf~~~~~~~~~~~~~~i~~-f~~er~v~~rE~ 491 (679)
.|++.....-+.+-+++.+++|.++-+. + ..+... -.|.+.+.....+.. .+... .-.|+.++.|=+
T Consensus 7 ~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~ 83 (236)
T TIGR01247 7 IRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF---SGISVIWDRQFGFLKEIL 83 (236)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHhCHHHHHH
Confidence 4555555556677777777777766431 1 111111 123333222222211 11111 112333333333
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 005754 492 ASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTI 571 (679)
Q Consensus 492 ~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~~~~A~~~ 571 (679)
..=-+...|+++|.+.+++..++..+++..+.+++.+++. ..++..++..++..++..++|.++++..++.+.++.+
T Consensus 84 -~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i 160 (236)
T TIGR01247 84 -VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQII 160 (236)
T ss_pred -hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3333678999999999999999999999999888877553 3455555556666778899999999999999999999
Q ss_pred HHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCccccCcccccccccCC
Q 005754 572 VTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQ 649 (679)
Q Consensus 572 ~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~~~~~~~~~~~~~ 649 (679)
.+++..+++.+||.+.| .+|+|++|+.+++|++|+.|++-..-.++. + .
T Consensus 161 ~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~----------------~-------------~ 211 (236)
T TIGR01247 161 MSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS----------------P-------------T 211 (236)
T ss_pred HHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC----------------c-------------c
Confidence 99999999999999998 899999999999999999998654322221 0 0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q 005754 650 ISPLVSIGAFLSMFVGYRLLAYL 672 (679)
Q Consensus 650 ~~~~~~~~iL~~~~~~f~~l~~~ 672 (679)
.+.+.++++++++.+++.+++..
T Consensus 212 ~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 212 FPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 14556788888888888877754
No 425
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.36 E-value=6.7e-12 Score=127.36 Aligned_cols=139 Identities=20% Similarity=0.236 Sum_probs=89.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC-cCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR-LHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~-~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
++.+.+|+++.+++|++++|.||||+||||+|+++++. +.+ ..|..... .. -.++|..|- +..+..
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a-~~------~~~~~~~~i---~~~~~~ 83 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPA-SS------ATLSIFDSV---LTRMGA 83 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEc-Cc------eEEeccceE---EEEecC
Confidence 35789999999999999999999999999999999993 332 23432221 11 112332221 111111
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccC--HHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGIS--GGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
.|++. .++| ..|-+|++-...-+.+|+++|+|||.+
T Consensus 84 ~d~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~ 121 (222)
T cd03287 84 SDSIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGR 121 (222)
T ss_pred ccccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCC
Confidence 11110 0111 123444444444567899999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHhC-CcEEEEEeCCccHHHHHhC
Q 005754 247 GLDSTAAYRL-VSTLGSLVQR-GKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 247 gLD~~~~~~i-~~~L~~l~~~-g~tii~~tH~~~~~i~~~~ 285 (679)
|.|+.....+ ...++.+.+. +.++|++||++. +.++.
T Consensus 122 gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 122 GTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred CCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 9998777775 5677788776 899999999964 44444
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.34 E-value=8.5e-13 Score=140.08 Aligned_cols=174 Identities=26% Similarity=0.343 Sum_probs=120.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC--eeeEEEE------CCCCccccccC------cEEEEecCCCCCC---
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILT------NNNKPTKHISK------RTGFVTQDDILYP--- 164 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~--~~G~i~~------~g~~~~~~~~~------~i~yv~Q~~~l~~--- 164 (679)
+||++.+++|.||-||||-|++++|..+|.-| ..+-.+- .|.+....+.+ +.-.=||.-..+|
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999887432 1110000 01100000000 0000122111111
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
..+|.+++. ....++..+++++.+.|.+..++-+ ..|||||-||.+||.+-+.+.++.++|||
T Consensus 178 k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 178 KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 123444332 2223335677888888887665544 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
.+-||...+..-...++.+...++=||++.||.+- +--+.|-+..|..
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEec
Confidence 99999999999999999999889999999999763 4556788887763
No 427
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.34 E-value=4e-11 Score=120.37 Aligned_cols=148 Identities=13% Similarity=0.103 Sum_probs=122.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005754 497 TLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTM 576 (679)
Q Consensus 497 ~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~~~~A~~~~~~~~ 576 (679)
+...++++|++..++..+++.+++..+.|++.|++.. .++.+++++++..++..++|.++++++++...+. +.+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4567899999999999999999999999999999864 5667777778888899999999999998765444 33445
Q ss_pred HHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCccccCcccccccccCCCCchH
Q 005754 577 LAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLV 654 (679)
Q Consensus 577 ~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~~~~~~~~~~~~~~~~~~ 654 (679)
.+.++++|.+.| .+|.|++|+.|++|++|+.+++-...+.+.. .+.|.
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~~------------------------------~~~~~ 183 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGND------------------------------GTLWQ 183 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCcH------------------------------HHHHH
Confidence 566677888888 9999999999999999999999766554310 14577
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 655 SIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 655 ~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
++++++++.+++.++++...|+-|
T Consensus 184 ~~~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 184 AVAVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888999999999999999988765
No 428
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.34 E-value=1.3e-12 Score=116.63 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=58.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.+... ..++.+++++|+ ++. -
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-I 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-h
Confidence 56899999999999999999999999999999986 4568888876532 345567777777 443 5
Q ss_pred CHHHHHHH
Q 005754 167 TVRETLVF 174 (679)
Q Consensus 167 TV~E~l~~ 174 (679)
|++|||.+
T Consensus 70 ti~~Ni~~ 77 (107)
T cd00820 70 RLRLNIFL 77 (107)
T ss_pred hHHhhcee
Confidence 99999986
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.28 E-value=7.7e-12 Score=143.97 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=70.2
Q ss_pred cccCHHHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 216 RGISGGERKRVSIAHEMLIN----PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~----P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999974 45789999999
Q ss_pred eCCe
Q 005754 292 SEGR 295 (679)
Q Consensus 292 ~~G~ 295 (679)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 430
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.26 E-value=1.2e-10 Score=129.09 Aligned_cols=173 Identities=20% Similarity=0.271 Sum_probs=113.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc---c---------ccccCcEEEEec
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP---T---------KHISKRTGFVTQ 158 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~---~---------~~~~~~i~yv~Q 158 (679)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. . ..+++.+.+|.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 4689999 999999999999999999999999999988763 57777755432 1 124567888887
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH-HHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA-HEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA-~aL~~~P~ 237 (679)
.+.-. -.+....+.+ .. +.|.+..-|- |.++- ...++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a-------------~~-iAEyfr~~g~----~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA-------------TA-IAEYFRDQGL----NVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH-------------HH-HHHHHHHCCC----cEEEE---EeChH-----HHHHHHHHHH----
Confidence 54321 0111111111 01 1222222232 11111 00111 11111 1111
Q ss_pred eEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 238 LLILDEP--TSGLDSTAAYRLVSTLGSLVQ--RGK-----TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 238 lllLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.+.|| |+|+|+.....+.+.++++.+ +|. ||++.+||..+ .+||++..+.+|+++..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123454 789999999999999999974 575 99999999763 7899999999999999998765
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.25 E-value=8.1e-12 Score=147.78 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=63.3
Q ss_pred cccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS-TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
+.+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. +++.+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 46999999999999988 8999999999999999999998864 677787789999999999542 33344444433 45
Q ss_pred eEEE
Q 005754 295 RCLY 298 (679)
Q Consensus 295 ~iv~ 298 (679)
.+.+
T Consensus 466 ~~~~ 469 (782)
T PRK00409 466 SVEF 469 (782)
T ss_pred EEEE
Confidence 5544
No 432
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=6.4e-11 Score=134.77 Aligned_cols=138 Identities=24% Similarity=0.391 Sum_probs=105.6
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV------MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+..|++.|.+.|...+.+... ........+.++ |..+||.-. -.++...+|||||.||+-||..+-++=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YL----tL~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYL----TLSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcc----cccccCCCcChhHHHHHHHHHHhcccc
Confidence 345788888888766543211 111112222333 334577643 224566789999999999999998775
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHHH
Q 005754 237 --SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAMS 307 (679)
Q Consensus 237 --~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 307 (679)
=+++||||+.||-+..-+.+++.|++|++.|-|+|++.||+ +....+|+|+-| ..|+|++.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 47799999999999999999999999999999999999995 478899999998 4689999999999874
No 433
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.24 E-value=5.7e-12 Score=127.21 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 005754 222 ERKRVSIAHEMLINPSLLILDEPT-----SGLDSTAAYRLVSTLGSLVQ 265 (679)
Q Consensus 222 erqRv~IA~aL~~~P~lllLDEPt-----sgLD~~~~~~i~~~L~~l~~ 265 (679)
|++++.||++++.+|+++++|||| +|||+.+++.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
No 434
>PRK10869 recombination and repair protein; Provisional
Probab=99.24 E-value=2.2e-11 Score=139.29 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=69.8
Q ss_pred cccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 216 RGISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +..++|+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 699999999984 56899999999
Q ss_pred eCCe
Q 005754 292 SEGR 295 (679)
Q Consensus 292 ~~G~ 295 (679)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8743
No 435
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=2.3e-11 Score=149.56 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=74.8
Q ss_pred CccCcccCHHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHH
Q 005754 212 NSFIRGISGGERKRVSIAHEMLI----------NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRV 281 (679)
Q Consensus 212 ~~~~~~LSgGerqRv~IA~aL~~----------~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i 281 (679)
++.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|++|||++. ..
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~ 1023 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FR 1023 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HH
Confidence 34577899999999999999986 79999999999999999999999999999888999999999965 57
Q ss_pred HHhCCeEEEEeCC
Q 005754 282 YQMFDKVLVLSEG 294 (679)
Q Consensus 282 ~~~~D~v~lL~~G 294 (679)
..++|+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 8899999999753
No 436
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.23 E-value=1.9e-11 Score=140.91 Aligned_cols=79 Identities=32% Similarity=0.457 Sum_probs=70.0
Q ss_pred cCcccCHHHHHHHHHHHHHh----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHH
Q 005754 214 FIRGISGGERKRVSIAHEML----------INPSLLILDEPT-SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVY 282 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL~----------~~P~lllLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~ 282 (679)
.+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 35689999999999999887 599999999998 789999999999999998 5899999999964 56
Q ss_pred HhCCeEEEEeC-CeE
Q 005754 283 QMFDKVLVLSE-GRC 296 (679)
Q Consensus 283 ~~~D~v~lL~~-G~i 296 (679)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 554
No 437
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.23 E-value=5.3e-09 Score=108.56 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=148.9
Q ss_pred HHHHHHHHHHH-ccC-chhHHHHHHHHHHHHHHHHHHhcCC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 005754 411 FSILLHRSLKE-RKH-ESLNTLRVFQVIAASLLSGIMWWHS-DF-REVQDRLGLFFFISVFWGVLPSVNAVF-----AFP 481 (679)
Q Consensus 411 ~~~L~~R~~~~-~r~-~~~~~~r~~~~i~~~ll~G~~f~~~-~~-~~~~~r~g~lf~~~~~~~~~~~~~~i~-----~f~ 481 (679)
...+.+|.++. +|+ +......+++-++.-+++|..+-.. +. .+ .+. .-|+.....++..+.++.. .+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y--~~f~~pg~l~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSY--AAFLAAGMVATSAMTASTFETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566898865 465 4555566777777777777776432 11 11 111 1122111111111111111 111
Q ss_pred H--hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 482 Q--ERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALG 559 (679)
Q Consensus 482 ~--er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~is 559 (679)
. |+..+.|-+..-. ++..+.+||++.+.-..++..++...+.++ .|..+. ......+.++++..++..++|+++|
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2333333333333 778999999999987777777665555443 344433 3344444555667777789999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCcccc
Q 005754 560 AIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDA 637 (679)
Q Consensus 560 a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~ 637 (679)
++.++.+.+..+..+++.+++.+||.+.| .+|.|++|+.+++|+.|+.|++=..-+++.
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~------------------- 221 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP------------------- 221 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC-------------------
Confidence 99999999999999999999999999988 999999999999999999998654422221
Q ss_pred CcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005754 638 SCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRL 677 (679)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i 677 (679)
. .+.|.++++++++.+++..++....|+-
T Consensus 222 ---~--------~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 222 ---G--------TQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred ---c--------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0335567788888888888888777663
No 438
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.21 E-value=7.7e-12 Score=128.95 Aligned_cols=177 Identities=17% Similarity=0.229 Sum_probs=105.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeE--EEECCCCcc--ccccC---cEEEEecCCCCCCCCCH---
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGT--ILTNNNKPT--KHISK---RTGFVTQDDILYPHLTV--- 168 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~--i~~~g~~~~--~~~~~---~i~yv~Q~~~l~~~lTV--- 168 (679)
+.+.+||.++|+||+|+|||||++.|++....... ... +.+-+++.. .++.+ .+-.+.+-+. .+...+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f-dv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP-EVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccC-CeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 46789999999999999999999999997754211 122 221222111 11211 1222333222 111000
Q ss_pred HHHHHHHhhhcC-CCC----CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH--------HHHHHHHHHHhhC
Q 005754 169 RETLVFCSLLRL-PRT----LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE--------RKRVSIAHEMLIN 235 (679)
Q Consensus 169 ~E~l~~~~~~~~-~~~----~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--------rqRv~IA~aL~~~ 235 (679)
+.-+..+..++. ... ++. ..+..+..+.+ .+ ...+.+|||| +||+++||++..+
T Consensus 89 ~~~~~~a~~~~~~G~~vll~iDe---i~r~a~a~~ev---------~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~ 155 (249)
T cd01128 89 EMVLEKAKRLVEHGKDVVILLDS---ITRLARAYNTV---------VP-PSGKILSGGVDANALHKPKRFFGAARNIEEG 155 (249)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEC---HHHhhhhhhhc---------cc-cCCCCCCCCcChhhhhhhHHHHHHhcCCCCC
Confidence 011111111100 000 000 01111112222 22 2344589999 9999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 236 PSLLILDEPTSGLDSTAAYR-LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....+|.|.+|+.|++
T Consensus 156 gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 156 GSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred CceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 999999 999999755544 54 5666556889999999965 4688999999999987
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.21 E-value=3.5e-11 Score=121.58 Aligned_cols=64 Identities=25% Similarity=0.490 Sum_probs=54.6
Q ss_pred CcccCHHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 215 IRGISGGERKRVSIAHEMLINP---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~~~P---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
...+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3457999999999998888777 899999999999999999999999988777889999999974
No 440
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.19 E-value=1.1e-08 Score=106.06 Aligned_cols=232 Identities=16% Similarity=0.190 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCC-Cc------hhH-----HHHHHHHHHHHHHHHHHHHHH
Q 005754 409 NQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHS-DF------REV-----QDRLGLFFFISVFWGVLPSVN 475 (679)
Q Consensus 409 ~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~-~~------~~~-----~~r~g~lf~~~~~~~~~~~~~ 475 (679)
++++.+++|.++. .|++.....-+++-++.-+++|.+|-.. +. .+. .--.|.+-+...+.++. .
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~---~ 78 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ---S 78 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---h
Confidence 6789999999886 5766666667788888888888877431 10 110 11112222222211111 1
Q ss_pred HHH-HHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHH
Q 005754 476 AVF-AFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGL 554 (679)
Q Consensus 476 ~i~-~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~ 554 (679)
+.. ..-.|+..+.+=+.... +...+.++|++..+-..+++.+++.++.+. .|.+.....++.....+++..+...++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111 11122334444444444 778899999999988888877665555443 366555444444444555566778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CC---hhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCC
Q 005754 555 GLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KM---PSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD 629 (679)
Q Consensus 555 g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~i---p~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~ 629 (679)
|.++|+++++.+.+..+.++++.+++..+|.+.+ .+ |.|++|+.+++|+.|..|++=.. +.+.
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~----------- 224 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ----------- 224 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC-----------
Confidence 9999999999999998888888899999998866 44 88999999999999999877532 2110
Q ss_pred CCCCccccCcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 630 RHGSSRDASCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 630 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
..|..+.+++++.+++..++....|+-+
T Consensus 225 ---------------------~~~~~~~~~~~~~~v~~~~~~~~fr~~~ 252 (253)
T TIGR03861 225 ---------------------LNLPALGWTLGATTLFTLLAFWGFDPQH 252 (253)
T ss_pred ---------------------cchhHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1144556777888888888888777643
No 441
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.18 E-value=1.2e-10 Score=117.87 Aligned_cols=135 Identities=24% Similarity=0.276 Sum_probs=89.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++.+-+|+++..++|++++|.||||+||||+++++++..-.. .. |-..... ...++++ +.++..+...
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~------G~~vpa~-~~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QM------GMDVPAK-SMRLSLV---DRIFTRIGAR 83 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--Hc------CCccCcc-ccEeccc---cEEEEecCcc
Confidence 467899999999999999999999999999999999853210 01 1111110 0112211 2222222222
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH--HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG--GERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|++.. ++|. -|-+|++-....+.+|+++|+|||.+|
T Consensus 84 d~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~G 121 (218)
T cd03286 84 DDIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRG 121 (218)
T ss_pred ccccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCC
Confidence 22211 0111 234444444444578999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhC-CcEEEEEeCCcc
Q 005754 248 LDSTAAYRLVST-LGSLVQR-GKTIVTSMHQPS 278 (679)
Q Consensus 248 LD~~~~~~i~~~-L~~l~~~-g~tii~~tH~~~ 278 (679)
+|+.....+... ++.+.+. +.++|++||++.
T Consensus 122 t~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 122 TSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 999999999888 7788775 899999999964
No 442
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.17 E-value=2.7e-10 Score=116.56 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=92.1
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005754 100 MVSPGEILAILGPSGSGKSTM-LNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLL 178 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTL-L~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~ 178 (679)
-+++|++++|.|+|||||||| ++.+.+..+++ .++.|+..+ .|..+.+.....+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-------------------~~~~yi~~e------~~~~~~~~~~~~~ 74 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-------------------YSVSYVSTQ------LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-------------------CcEEEEeCC------CCHHHHHHHHHHh
Confidence 379999999999999999999 78988865421 113444421 3555555443322
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCC----CH
Q 005754 179 RLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML----INPSLLILDEPTSGL----DS 250 (679)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~P~lllLDEPtsgL----D~ 250 (679)
.. . .++.... + ... +.+.. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+
T Consensus 75 g~--~---------~~~~~~~-~--~l~---~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~ 136 (230)
T PRK08533 75 GY--D---------INKKLIS-G--KLL---YIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASE 136 (230)
T ss_pred CC--c---------hHHHhhc-C--cEE---EEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcch
Confidence 21 0 0111110 0 000 00001 136777665555544333 369999999999999 88
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCccH------HHHHhCCeEEEEe
Q 005754 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSS------RVYQMFDKVLVLS 292 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~g~tii~~tH~~~~------~i~~~~D~v~lL~ 292 (679)
.....+.+.+++++++|.|+++++|+... .+..++|-|+.|+
T Consensus 137 ~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 137 VAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 88899999999998888888777664320 0133557777775
No 443
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.15 E-value=1.4e-08 Score=103.78 Aligned_cols=220 Identities=16% Similarity=0.169 Sum_probs=138.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHhcCCC-chhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHhcCCCCC
Q 005754 422 RKHESLNTLRVFQVIAASLLSGIMWWHSD-FREVQD-RLGLFFFISVFWGVLPSVNAVFAFPQER--AIFMKERASGMYT 497 (679)
Q Consensus 422 ~r~~~~~~~r~~~~i~~~ll~G~~f~~~~-~~~~~~-r~g~lf~~~~~~~~~~~~~~i~~f~~er--~v~~rE~~~g~Y~ 497 (679)
.|+|.....-+.+.+++-++.+.+|-+.. .+..+. -.|.+-+..++ .+....-.....|| ..+.|=+..-. +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVTHNRGATFIPVLMALAAIS---TAFTGQAIAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccCCcchhHhhHHHHHHHHHH---HHHHHHHHHHHHHHHhCHHHHHhcCCC-c
Confidence 35666555555666666666666665421 111211 12222222221 11122222333443 35555554444 7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 005754 498 LSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIM---DAKQASTIVTV 574 (679)
Q Consensus 498 ~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~---~~~~A~~~~~~ 574 (679)
+..|+++|++..++..++..+++. +++++.|++.....+ ..+..+++..+.+.+++.+++++.+ +.+.+..++.+
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999998888777655554 556677887653322 3333344444556677777777764 55555788888
Q ss_pred HHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCccccCcccccccccCCCCc
Q 005754 575 TMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISP 652 (679)
Q Consensus 575 ~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~~~~~~~~~~~~~~~~ 652 (679)
+..+++++||.+.| .+|.|++|+.+++|++|+.+++-..-..+. +....
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~-----------------------------~~~~~ 206 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV-----------------------------DTFGA 206 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC-----------------------------ChhhH
Confidence 88999999999998 999999999999999999998654322211 01245
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 005754 653 LVSIGAFLSMFVGYRLLAYLALRR 676 (679)
Q Consensus 653 ~~~~~iL~~~~~~f~~l~~~~L~~ 676 (679)
|.++++++++.+++..++....||
T Consensus 207 ~~~~~~l~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 207 VRDLVVVLAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678888888888888888777665
No 444
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.13 E-value=2.6e-10 Score=109.74 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=56.2
Q ss_pred ccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 210 vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
.|.+..+..|.||-=---+.+. .++.-+++||||-++|.|.-+..++..|+++++.|.-+|+.||.|-
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred cCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 3444556789999755444443 3567899999999999999999999999999999999999999974
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.11 E-value=6.9e-10 Score=109.06 Aligned_cols=80 Identities=20% Similarity=0.101 Sum_probs=65.8
Q ss_pred ccCcccCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEeCCccH----
Q 005754 213 SFIRGISGGERK------RVSIAHEMLINPSLLILDEPTSGLD---STAAYRLVSTLGSLVQRGKTIVTSMHQPSS---- 279 (679)
Q Consensus 213 ~~~~~LSgGerq------Rv~IA~aL~~~P~lllLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tii~~tH~~~~---- 279 (679)
..+..+|+||+| +.........+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++|+...
T Consensus 67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc
Confidence 345578999998 4444555667999999999999999 888888999999998889999999998643
Q ss_pred ----HHHHhCCeEEEEe
Q 005754 280 ----RVYQMFDKVLVLS 292 (679)
Q Consensus 280 ----~i~~~~D~v~lL~ 292 (679)
.+..++|.++.|+
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 2567899999887
No 446
>PRK13695 putative NTPase; Provisional
Probab=99.09 E-value=9.5e-11 Score=114.53 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=64.7
Q ss_pred cccCHHHHHHHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 216 RGISGGERKRVSIAHEMLINPSLLILDEP--TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~P~lllLDEP--tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
..+||+|+-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|.++|+++|+. .+...+|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 35999999999999999999999999995 43444 445666777666799999999983 35678999999999
Q ss_pred CeEEEec
Q 005754 294 GRCLYFG 300 (679)
Q Consensus 294 G~iv~~G 300 (679)
|++...-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997764
No 447
>PRK03918 chromosome segregation protein; Provisional
Probab=99.07 E-value=3.3e-10 Score=137.55 Aligned_cols=78 Identities=28% Similarity=0.352 Sum_probs=69.0
Q ss_pred cCcccCHHHHHH------HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCe
Q 005754 214 FIRGISGGERKR------VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDK 287 (679)
Q Consensus 214 ~~~~LSgGerqR------v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~ 287 (679)
.+..|||||+++ ++||++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 467899999994 5556678899999999999999999999999999999877788999999996 36789999
Q ss_pred EEEEeC
Q 005754 288 VLVLSE 293 (679)
Q Consensus 288 v~lL~~ 293 (679)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
No 448
>PRK15066 inner membrane transport permease; Provisional
Probab=99.05 E-value=1.5e-07 Score=97.78 Aligned_cols=237 Identities=13% Similarity=0.119 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHc-cCchh-HHHHHHHHHHHHHHHHHHhcCC-Cc-hhH--HH--HHHHHHHHHHHHHHHHHHHHHH
Q 005754 407 WLNQFSILLHRSLKER-KHESL-NTLRVFQVIAASLLSGIMWWHS-DF-REV--QD--RLGLFFFISVFWGVLPSVNAVF 478 (679)
Q Consensus 407 ~~~Q~~~L~~R~~~~~-r~~~~-~~~r~~~~i~~~ll~G~~f~~~-~~-~~~--~~--r~g~lf~~~~~~~~~~~~~~i~ 478 (679)
.|+-++.+.+|.++.. |+... ...-+++.++..+++|.++-.. +. .+. .. -.|.+-+.....+.. .+..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~---~~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYS---NVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3567888999998864 43322 2334455555666666654321 11 111 11 113332222221111 1122
Q ss_pred HHHHhhHH-HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 479 AFPQERAI-FMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLA 557 (679)
Q Consensus 479 ~f~~er~v-~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~ 557 (679)
.+..+|.. ..++...---+...+.+++++...-..++..++..++.+...|.+... ...++..+++..++....|.+
T Consensus 83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 22233311 112212223477889999999887776776666655555444665432 223333333333333445888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCcc
Q 005754 558 LGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSR 635 (679)
Q Consensus 558 isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c 635 (679)
+|.+.++.+.+..+.++++.+++..+|.+.| ++|.|++|+.+++|+.|..|++=..-+.+.
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~~----------------- 223 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGIS----------------- 223 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCCC-----------------
Confidence 8888999988899999999999999998888 899999999999999999998753322110
Q ss_pred ccCcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 636 DASCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
....|.++++++++.+++.+++....|+-+
T Consensus 224 -------------~~~~~~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 224 -------------DVPLWLAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred -------------CccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 013467888899999999999988888754
No 449
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.04 E-value=6.5e-10 Score=136.36 Aligned_cols=80 Identities=29% Similarity=0.249 Sum_probs=69.7
Q ss_pred ccCcccCHHHHHHHHHHHHHhh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 213 SFIRGISGGERKRVSIAHEMLI--------NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 213 ~~~~~LSgGerqRv~IA~aL~~--------~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
+.+++|||||++|++||++|+. +|++||+||||+|||+.+...+++.|..+.+.|+||+++||.. ....++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 4577899999999999999996 8999999999999999999999999999998899999999974 334555
Q ss_pred CCeEEEEeC
Q 005754 285 FDKVLVLSE 293 (679)
Q Consensus 285 ~D~v~lL~~ 293 (679)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 666666654
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.03 E-value=6.5e-10 Score=118.68 Aligned_cols=143 Identities=14% Similarity=0.199 Sum_probs=93.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCCHHHHHHHH
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLTVRETLVFC 175 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 175 (679)
+++.+++|+.++|.||+|||||||+++|++.++++ .+.+.+....... .....+.++.+...-
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~~------------- 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGGQ------------- 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCCC-------------
Confidence 56788899999999999999999999999998753 3445553211000 001122222211000
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 005754 176 SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255 (679)
Q Consensus 176 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~ 255 (679)
+ ...++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 201 -------------------------~-------------~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 201 -------------------------G-------------LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -------------------------C-------------cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 000111 1134456778999999999996 34
Q ss_pred HHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 256 i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+.+.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56667766643456799999976 45679999999999998888877765
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.00 E-value=9.5e-09 Score=123.05 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=64.5
Q ss_pred hhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHH--------HHHhCCeEEEEeCCeEEEecChh
Q 005754 233 LINPSLLILDEPTSGL-DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSR--------VYQMFDKVLVLSEGRCLYFGKGS 303 (679)
Q Consensus 233 ~~~P~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~--------i~~~~D~v~lL~~G~iv~~G~~~ 303 (679)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||++... +.+.||++++|.+|++...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 5799999999999999 79999999999999998899999999998642 1368999999999998766633
Q ss_pred hHHHHHHHcCC
Q 005754 304 EAMSYFESVGF 314 (679)
Q Consensus 304 ~~~~~f~~~g~ 314 (679)
++++..|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34455553
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.98 E-value=2.5e-09 Score=101.58 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=48.2
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 218 ISGGERKRVSIAHEMLINPSLLILDEPTS----------GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 218 LSgGerqRv~IA~aL~~~P~lllLDEPts----------gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.+.++.++...+++...+|+++++|||++ +.|......+.+++..+.+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45666677888888999999999999994 455555666666666665569999999998754
No 453
>PRK01156 chromosome segregation protein; Provisional
Probab=98.94 E-value=2.6e-09 Score=129.93 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=67.0
Q ss_pred cCcccCHHHHHHHHH------HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-cEEEEEeCCccHHHHHh
Q 005754 214 FIRGISGGERKRVSI------AHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QR-G-KTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 214 ~~~~LSgGerqRv~I------A~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tii~~tH~~~~~i~~~ 284 (679)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .|||++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 489999999999999999999999999999998654 33 3 48999999964 5689
Q ss_pred CCeEEEEe
Q 005754 285 FDKVLVLS 292 (679)
Q Consensus 285 ~D~v~lL~ 292 (679)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
No 454
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.92 E-value=4.7e-09 Score=115.63 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=107.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .|.+...|+.. .+|+|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg--------------------~ev~e 199 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG--------------------REVKD 199 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc--------------------ccHHH
Confidence 4577775 999999999999999999999999999987653 45555544321 46666
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-------hCCCeEEEeC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-------INPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-------~~P~lllLDE 243 (679)
.+.... ..-|+.+. ..+ .....-|.|+|+|+..+.+.+ .++-++++||
T Consensus 200 ~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 200 FIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred HHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 554211 11122110 111 123468999999999998877 6899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
||++.|+. .++-..+.+....|.+..+.+|.+ .+.+-+ -...+|.+...+.
T Consensus 255 lTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~ERa---g~~~~GSiT~~~t 305 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLERS---GKTQKGSITGIYT 305 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHHHh---ccCCCcceEEEEE
Confidence 99999996 555556666654588888888842 344433 3357888866554
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.86 E-value=2.6e-08 Score=102.01 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=94.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhc-CcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHh
Q 005754 98 TGMVSPGEILAILGPSGSGKSTMLNVLAG-RLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCS 176 (679)
Q Consensus 98 s~~i~~Ge~~allGpnGsGKSTLL~~L~G-~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 176 (679)
.+=+++|.++.|.|++|+|||||...++- ..+. .+.+.|+..+ -+..+.+.-..
T Consensus 19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-------------------g~~~~y~~~e------~~~~~~~~~~~ 73 (234)
T PRK06067 19 GGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-------------------GKKVYVITTE------NTSKSYLKQME 73 (234)
T ss_pred CCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-------------------CCEEEEEEcC------CCHHHHHHHHH
Confidence 45689999999999999999999988752 1211 1123444432 12333332211
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh--CCCeEEEeCCCCC---CCHH
Q 005754 177 LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSG---LDST 251 (679)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~--~P~lllLDEPtsg---LD~~ 251 (679)
.+.. . - ++.+. -|.-...+.... .....|.++++.+.....++. +|+++++||||+. +|..
T Consensus 74 ~~g~--~--~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~ 139 (234)
T PRK06067 74 SVKI--D--I-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEED 139 (234)
T ss_pred HCCC--C--h-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHH
Confidence 1111 0 0 00000 011011010000 112356788999999999998 8999999999964 5555
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCccH------HHHHhCCeEEEEeC
Q 005754 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSS------RVYQMFDKVLVLSE 293 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~tii~~tH~~~~------~i~~~~D~v~lL~~ 293 (679)
....+++.++.++++|.|+++++|+... .+..++|-++.|+.
T Consensus 140 ~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 140 DILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5566666677777789999999998642 14566777777763
No 456
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.85 E-value=3.4e-09 Score=132.10 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=67.7
Q ss_pred ccCcccCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeE
Q 005754 213 SFIRGISGGERKRVSIAHEML----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKV 288 (679)
Q Consensus 213 ~~~~~LSgGerqRv~IA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v 288 (679)
..+..||||||+|++||++++ .+|+++||||||+|||+.+...+.+.|+.+++ +.+||++||++. ....||++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhH
Confidence 356789999999999999985 56799999999999999999999999999875 478999999975 45789999
Q ss_pred EEEe
Q 005754 289 LVLS 292 (679)
Q Consensus 289 ~lL~ 292 (679)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8765
No 457
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.85 E-value=4.8e-09 Score=131.87 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=64.3
Q ss_pred cccccCccCcccCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEeC
Q 005754 207 NTIIGNSFIRGISGGERK------RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-----RGKTIVTSMH 275 (679)
Q Consensus 207 ~~~vg~~~~~~LSgGerq------Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~~tH 275 (679)
|+.++ ..+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.|||++||
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 44443 23579999999 99999999999999999999999999999999999988742 3789999999
Q ss_pred CccHHHHHhC
Q 005754 276 QPSSRVYQMF 285 (679)
Q Consensus 276 ~~~~~i~~~~ 285 (679)
++. .+..+|
T Consensus 1269 d~~-~~~~~~ 1277 (1311)
T TIGR00606 1269 DED-FVELLG 1277 (1311)
T ss_pred CHH-HHHHHh
Confidence 965 466654
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.83 E-value=1.8e-08 Score=100.83 Aligned_cols=57 Identities=12% Similarity=0.327 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 227 ~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+|+++|..+|+++++|||. |.++...++ +.+..|..++.|+|.++ ..+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 665543333 34567999999999975 346788887664
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.80 E-value=3e-08 Score=101.96 Aligned_cols=136 Identities=25% Similarity=0.379 Sum_probs=85.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC-CCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-NKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPR 182 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g-~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 182 (679)
|++..|+||+|+|||||.--++--.. .|.-+..+ ... .-..++-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~--~~~~~Vlyi~~Ed---------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV--TEPGRVVYLSAED---------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc--CCCceEEEEECCC----------------------
Confidence 67889999999999999987764332 12111111 111 1123455554322
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH----------------HHhhCCCeEEEeCCCC
Q 005754 183 TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH----------------EMLINPSLLILDEPTS 246 (679)
Q Consensus 183 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~----------------aL~~~P~lllLDEPts 246 (679)
+..+..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 --~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~ 121 (239)
T cd01125 52 --PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLV 121 (239)
T ss_pred --CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChH
Confidence 22334455666666666544333221 1244555554433 335799999999 765
Q ss_pred ------CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCcc
Q 005754 247 ------GLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPS 278 (679)
Q Consensus 247 ------gLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~ 278 (679)
.+|+.....+++.|++++++ |.|||+++|..-
T Consensus 122 ~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 122 SFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999865 999999999853
No 460
>PRK02224 chromosome segregation protein; Provisional
Probab=98.75 E-value=2e-08 Score=122.13 Aligned_cols=77 Identities=34% Similarity=0.430 Sum_probs=67.1
Q ss_pred CcccCHHHHH------HHHHHHHHhhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEeCCccHHH
Q 005754 215 IRGISGGERK------RVSIAHEMLIN-----P-SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK-TIVTSMHQPSSRV 281 (679)
Q Consensus 215 ~~~LSgGerq------Rv~IA~aL~~~-----P-~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tii~~tH~~~~~i 281 (679)
+..||||||+ |++++++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5689999999 89999988864 3 67999999999999999999999999987664 8999999974 4
Q ss_pred HHhCCeEEEEeC
Q 005754 282 YQMFDKVLVLSE 293 (679)
Q Consensus 282 ~~~~D~v~lL~~ 293 (679)
...+|+++.|.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999974
No 461
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.74 E-value=1.6e-08 Score=126.19 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=68.5
Q ss_pred cCcccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEE
Q 005754 214 FIRGISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVL 289 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~ 289 (679)
.+..||||||++++||++|+. +|++++||||++|||+..+..+.+.|+++++ +.++|++||++. ....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 456899999999999999985 6799999999999999999999999999865 478999999963 678999998
Q ss_pred EEeC
Q 005754 290 VLSE 293 (679)
Q Consensus 290 lL~~ 293 (679)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8764
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.74 E-value=4.5e-08 Score=109.40 Aligned_cols=151 Identities=22% Similarity=0.277 Sum_probs=92.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.++++.+..+++|++++++||||+||||++..|++.+... .| .++++++.+|. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G-------------~~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HG-------------ASKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cC-------------CCeEEEEeCCc---cchhHHHH
Confidence 3566777778899999999999999999999999976421 11 12578888875 34789999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHH-HHHHHHHHhhCC-----CeEEEeCCC
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERK-RVSIAHEMLINP-----SLLILDEPT 245 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~IA~aL~~~P-----~lllLDEPt 245 (679)
|.+.+..... +........+..+...++.+....++. +...+++. .+.-..+++.++ .+|.||.++
T Consensus 305 Lr~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 305 LRIYGKILGV---PVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHHHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 9986654321 111111223334455666665444443 22222322 233444455554 689999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~g~tii~~tH 275 (679)
.+ ..+.+.++.....+.+=++.|+
T Consensus 377 ~~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 377 HG------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred cH------HHHHHHHHHhccCCCCEEEEeC
Confidence 87 3445555555555555455555
No 463
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.69 E-value=3.9e-07 Score=83.21 Aligned_cols=59 Identities=31% Similarity=0.320 Sum_probs=46.4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCcEEEEEeC
Q 005754 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS------TLGSLVQRGKTIVTSMH 275 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~------~L~~l~~~g~tii~~tH 275 (679)
...+++..+..+.++--.+|.++++||+..-.+......... ........+..+|+++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 467888888888888877789999999999999998887765 22333345789999998
No 464
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.64 E-value=2.1e-06 Score=88.89 Aligned_cols=165 Identities=24% Similarity=0.305 Sum_probs=121.4
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 005754 483 ERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALG-AI 561 (679)
Q Consensus 483 er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~is-a~ 561 (679)
++..+.|=..+...+ ..+++++.+.......+...+...+..+..|. .....+..+..++.+..+...++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455533 56777777777777666666666666666662 2334455555666667777788888666 36
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCccccCc
Q 005754 562 IMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASC 639 (679)
Q Consensus 562 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~~~ 639 (679)
..+.+.+..++.++..++.+++|.+.| .+|.|++|+.++.|..|+.+++-.....+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------------------- 253 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------------------- 253 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc--------------------
Confidence 677888888888999999999999998 8999999999999999999998876554421
Q ss_pred ccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 640 KFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
. .+.|.++++++++.+++.+++.+.+|+.+
T Consensus 254 -~--------~~~~~~~~~l~~~~~v~~~~~~~~~~~~~ 283 (286)
T COG0842 254 -N--------DGIWISLLILLLFAVVFLLLGLLLLRRRR 283 (286)
T ss_pred -h--------hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 12677888999999999999999998754
No 465
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.64 E-value=3.3e-08 Score=109.02 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=70.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----------cccCcEEEEecC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----------HISKRTGFVTQD 159 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----------~~~~~i~yv~Q~ 159 (679)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++....|.+..++.+... ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35689999 9999999999999999999999999999887654344666555544321 123468999999
Q ss_pred CCCCCCCCHHHHHHHHhhh
Q 005754 160 DILYPHLTVRETLVFCSLL 178 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~ 178 (679)
...+..+++.|++.+.+..
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 9999999999999876654
No 466
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.60 E-value=2.3e-08 Score=110.10 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=43.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP 145 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~ 145 (679)
+++|++||+++++||+++|+|||||||||||+ +|+..|+. .|+|.++|.+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEEC
Confidence 46899999999999999999999999999999 67766532 24799998764
No 467
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.57 E-value=2.1e-06 Score=82.22 Aligned_cols=128 Identities=13% Similarity=0.036 Sum_probs=92.5
Q ss_pred HHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 481 PQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEF--IAFVQTLLVLLGYVLVSQGLGLAL 558 (679)
Q Consensus 481 ~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~--~~f~~f~~~~~l~~~~~~s~g~~i 558 (679)
-.|+..+.|-+..-. +.+.|+++|++...-..+++.++..++.+. .|.+... ...+.++++..+.......++..+
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~ 92 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAM 92 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888887777 679999999999999999998877777754 4877653 222233333333344445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHH
Q 005754 559 GAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLI 611 (679)
Q Consensus 559 sa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~ 611 (679)
+...++.+..+ ...++++++.+.+|.+.| ++|.|++|+.+++|++|+.+++=
T Consensus 93 a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 93 ALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 55555555433 456677777788888888 99999999999999999999874
No 468
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.1e-07 Score=103.75 Aligned_cols=60 Identities=23% Similarity=0.278 Sum_probs=55.3
Q ss_pred cccCHHHHHHHHHHHHHhh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 216 RGISGGERKRVSIAHEMLI---------NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~---------~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
..+|.||+|++.||..|+. +|+|+|||||+++||+..+..+++.|++. |.+|++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3589999999999999999 99999999999999999999999999764 779999999864
No 469
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.53 E-value=6.4e-07 Score=99.63 Aligned_cols=176 Identities=19% Similarity=0.231 Sum_probs=105.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---------cccCcEEEEecCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---------HISKRTGFVTQDDI 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---------~~~~~i~yv~Q~~~ 161 (679)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.+.-+.+-..+.+... .+++.+.++.+.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~ 229 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ 229 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC
Confidence 5689999 9999999999999999999999999999887643222222233333211 12233444444332
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH-HHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG-GERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~IA~aL~~~P~lll 240 (679)
++.+-..- + ..... +.+.+...|- |..+- ...|+- -|-+| .|+ +.
T Consensus 230 -----~p~~r~~~-~----------~~a~t-~AE~frd~G~----~Vll~---~DslTr~A~A~R-Eis---------l~ 275 (440)
T TIGR01026 230 -----SPLLRLKG-A----------YVATA-IAEYFRDQGK----DVLLL---MDSVTRFAMAQR-EIG---------LA 275 (440)
T ss_pred -----CHHHHHHH-H----------HHHHH-HHHHHHHCCC----CEEEE---EeChHHHHHHHH-HHH---------Hh
Confidence 12121110 0 00011 1122222232 11111 011221 11122 111 33
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHhCCc-------EEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 241 LDEP--TSGLDSTAAYRLVSTLGSLVQRGK-------TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 241 LDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.|| +.|+|+.....+-+++.+....+. ||++.+||..+ .++|++..+.+|+++.++...+
T Consensus 276 ~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 276 AGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred cCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhh
Confidence 5675 559999999999999999876666 88889999643 4789999999999999887665
No 470
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.52 E-value=2.7e-06 Score=102.61 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=54.7
Q ss_pred HHHHHhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHH--hCCeEEEEeCCeEE
Q 005754 228 IAHEMLINPSLLILDEPTSGL-DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQ--MFDKVLVLSEGRCL 297 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~--~~D~v~lL~~G~iv 297 (679)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.. +.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 577788999999999999999 7999999999999999889999999999764 443 23333333344444
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.52 E-value=4.4e-09 Score=119.05 Aligned_cols=165 Identities=20% Similarity=0.232 Sum_probs=96.8
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHH--hcCcCCCCCeeeEEEECCCCcccccc---CcEEEEecCCCCCCCCC
Q 005754 94 LNGI-TGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNNNKPTKHIS---KRTGFVTQDDILYPHLT 167 (679)
Q Consensus 94 L~~v-s~~i~~Ge~~allGpnGsGKSTLL~~L--~G~~~~~~~~~G~i~~~g~~~~~~~~---~~i~yv~Q~~~l~~~lT 167 (679)
|+.+ .+=+.+|..+.|.||+|||||||..-+ .|....+ +..+++........+. +..|+-.++..--
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~---- 82 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDE---- 82 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc----
Confidence 4454 457889999999999999999999866 3443311 2233443333222221 2344433321100
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH--HHHhhCCCeEEEeCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA--HEMLINPSLLILDEPT 245 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA--~aL~~~P~lllLDEPt 245 (679)
+++.+ .. ..+.. ..+.+++.+++.+..+. ..+.+|+|++|||.|+ .+|...|+..
T Consensus 83 --g~l~~---~~---~~~~~----~~~~~~~~~~l~~~l~~-----i~~~ls~g~~qRVvIDSl~aL~~~~~~~------ 139 (484)
T TIGR02655 83 --GKLFI---LD---ASPDP----EGQDVVGGFDLSALIER-----INYAIRKYKAKRVSIDSVTAVFQQYDAV------ 139 (484)
T ss_pred --CceEE---Ee---cCchh----ccccccccCCHHHHHHH-----HHHHHHHhCCcEEEEeehhHhhhhcCch------
Confidence 00000 00 00000 01112333444433332 2346999999999999 6666665543
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHH-------H-HHhCCeEEEEe
Q 005754 246 SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSR-------V-YQMFDKVLVLS 292 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~-------i-~~~~D~v~lL~ 292 (679)
...+..+.++++.+++.|.|+|+++|++... + ..++|.|+.|+
T Consensus 140 ----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5678889999999988899999999986420 1 45789999987
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.51 E-value=5.9e-07 Score=97.43 Aligned_cols=56 Identities=13% Similarity=0.320 Sum_probs=42.4
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 227 ~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
+++.+|-.+|+++++||+. |+.+....++ .+..|.+++.|+|..+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3566888999999999997 8888865544 3567999999999854 34566777554
No 473
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.49 E-value=3.7e-07 Score=111.19 Aligned_cols=79 Identities=29% Similarity=0.377 Sum_probs=70.4
Q ss_pred ccCcccCHHHHHHHHHHHHHh------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 213 SFIRGISGGERKRVSIAHEML------IN--PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 213 ~~~~~LSgGerqRv~IA~aL~------~~--P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
+.+..|||||+-.++||.+|+ .+ -+.+||||||..||+.+...++++|.++...+.+|+++||++ ++...
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 367789999999988887764 45 599999999999999999999999999998899999999995 57889
Q ss_pred CCeEEEEeC
Q 005754 285 FDKVLVLSE 293 (679)
Q Consensus 285 ~D~v~lL~~ 293 (679)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999999875
No 474
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.49 E-value=4.8e-08 Score=99.60 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=26.4
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 005754 94 LNGI-TGMVSPGEILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 94 L~~v-s~~i~~Ge~~allGpnGsGKSTLL~~L~ 125 (679)
|+.+ .+-+++|++++|.||+|+|||||...++
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 4443 4568999999999999999999988655
No 475
>PRK14079 recF recombination protein F; Provisional
Probab=98.45 E-value=3.5e-07 Score=99.44 Aligned_cols=75 Identities=25% Similarity=0.282 Sum_probs=62.2
Q ss_pred cccCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCC
Q 005754 216 RGISGGERKRVSIAHEML---------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D 286 (679)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|-+|+.| ..+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCc
Confidence 348999999999999998 899999999999999999999999888653 23555555433 4799
Q ss_pred eEEEEeCCeEEE
Q 005754 287 KVLVLSEGRCLY 298 (679)
Q Consensus 287 ~v~lL~~G~iv~ 298 (679)
+++.+.+|++.-
T Consensus 334 ~~~~~~~~~~~~ 345 (349)
T PRK14079 334 LTLRIEAGVFTP 345 (349)
T ss_pred eEEEEeccEecC
Confidence 999999988753
No 476
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.43 E-value=5e-07 Score=108.63 Aligned_cols=137 Identities=21% Similarity=0.245 Sum_probs=84.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.|-+|+++. +.+.++.|.|||++||||+||.++-..-- ...| .|||=+..- +++.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il--Aq~G-----------------~~VPa~~a~---i~~~d- 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL--AQIG-----------------SFVPAESAR---IGIVD- 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH--HhcC-----------------CceeccceE---ecccC-
Confidence 355667776 66789999999999999999998753210 0011 122211100 00111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh--CCCeEEEeCC---CC
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEP---TS 246 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~--~P~lllLDEP---ts 246 (679)
.+..++|-. +...+++|-=+.....++..|-. +++++|+||| |+
T Consensus 652 -----------------------~I~triga~--------d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 652 -----------------------RIFTRIGAS--------DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -----------------------eeeeccCcc--------cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 111111211 11223577766666777766654 8999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCe
Q 005754 247 GLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDK 287 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~ 287 (679)
.+|..+ ....+++.+.+. |.+++++||.. ++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 888433 455666777765 58999999993 57777775
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.41 E-value=2.4e-07 Score=92.32 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=64.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhh-hcCCCCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL-LRLPRTL 184 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~~~~~~ 184 (679)
+++|.||||||||||.++|++.+. .+ .+.++++|+.. ..++..+....... ...+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~--~~------------------~~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~-- 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG--NP------------------KVVIISQDSYY-KDLSHEELEERKNNNYDHPD-- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--CC------------------CeEEEEecccc-cccccccHHHhccCCCCCCC--
Confidence 579999999999999999999762 11 12334444322 22233332221110 01111
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 185 STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 185 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
....+...+.+..+...+..+.+. ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 58 --~~~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 --AFDFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred --cccHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 112233445666665544333332 3477777776555 5678999999999998876
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.40 E-value=6.3e-07 Score=88.66 Aligned_cols=83 Identities=19% Similarity=0.143 Sum_probs=58.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCC--CCCCCCCHH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDD--ILYPHLTVR 169 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~--~l~~~lTV~ 169 (679)
..+=+.+.+++|+.++|+||||||||||+++|+|.++++ .|.+.+.+..... ..+..++++.|.+ ...+..|+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344455678899999999999999999999999998753 5677776543211 1234566666543 346678999
Q ss_pred HHHHHHhhh
Q 005754 170 ETLVFCSLL 178 (679)
Q Consensus 170 E~l~~~~~~ 178 (679)
+.+....+.
T Consensus 91 ~~l~~~lR~ 99 (186)
T cd01130 91 DLLRSALRM 99 (186)
T ss_pred HHHHHHhcc
Confidence 988776543
No 479
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.26 E-value=2.6e-06 Score=106.35 Aligned_cols=162 Identities=15% Similarity=0.234 Sum_probs=88.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHh
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCS 176 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 176 (679)
+++..+++++++|+|++|+|||||++.+++.... ...|.+++++...... .. .+-.++... .+..
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~-~~--~~~~~~~~~-------~~~~--- 264 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKS-ME--IYSSANPDD-------YNMK--- 264 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccc-hh--hcccccccc-------cchh---
Confidence 4567788999999999999999999999887653 3467887765321110 00 000000000 0000
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 005754 177 LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256 (679)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i 256 (679)
....++.+.++++..++. +. .+ ++.|+| |..++-+|+||+- |.. ..
T Consensus 265 ---------~~l~~~~l~~il~~~~~~------~~-----~~-~~~~~~------L~~krvLLVLDdv----~~~---~~ 310 (1153)
T PLN03210 265 ---------LHLQRAFLSEILDKKDIK------IY-----HL-GAMEER------LKHRKVLIFIDDL----DDQ---DV 310 (1153)
T ss_pred ---------HHHHHHHHHHHhCCCCcc------cC-----CH-HHHHHH------HhCCeEEEEEeCC----CCH---HH
Confidence 001122334444443331 11 12 556665 3355567889984 433 33
Q ss_pred HHHHHHHH---hCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhhHHHHHHHcCC
Q 005754 257 VSTLGSLV---QRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314 (679)
Q Consensus 257 ~~~L~~l~---~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~ 314 (679)
++.|.... ..|.+||+|||+... +... +|+++-+.. =+.+++.+.|....+
T Consensus 311 l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 311 LDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 44444432 358999999999542 3222 566655531 144678888876544
No 480
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.25 E-value=1.2e-06 Score=110.03 Aligned_cols=60 Identities=30% Similarity=0.385 Sum_probs=53.3
Q ss_pred cCcccCHHHHHHHH----HHHH--------HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005754 214 FIRGISGGERKRVS----IAHE--------MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 214 ~~~~LSgGerqRv~----IA~a--------L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~ 276 (679)
...+||||||||++ +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|+++|.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 35789999999996 5644 45899999999999999999999999999888 7899999987
No 481
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.23 E-value=2.5e-05 Score=94.05 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=44.2
Q ss_pred HHhhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 231 EMLINPSLLILDEPTSGLD-STAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 889999999999999889999999999754
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.15 E-value=1.3e-06 Score=85.81 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=43.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--ccc-CcEEEEecCCCCCCCCCHHHHHHH
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HIS-KRTGFVTQDDILYPHLTVRETLVF 174 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~-~~i~yv~Q~~~l~~~lTV~E~l~~ 174 (679)
+||+++|+|+||||||||+++|+|++.+ +.++|.+... ..+ ...|+.+|+...++..++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998764 3556554322 111 234566666544455555555443
No 483
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.14 E-value=7.8e-05 Score=89.92 Aligned_cols=46 Identities=28% Similarity=0.273 Sum_probs=42.3
Q ss_pred hhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 233 LINPSLLILDEPTSGLD-STAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45899999999999999 78899999999999888999999999975
No 484
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.14 E-value=3.7e-06 Score=93.12 Aligned_cols=75 Identities=23% Similarity=0.266 Sum_probs=55.8
Q ss_pred Cccccc-cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC---CCccc--------ccc
Q 005754 83 GSTAKI-QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN---NKPTK--------HIS 150 (679)
Q Consensus 83 ~~~~~~-~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g---~~~~~--------~~~ 150 (679)
++++.+ .+..+++.++ .+.+||.++|+||||+||||||++|+++.+++ .|.+...| .+... ..+
T Consensus 144 ~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~e~~~~~l~~~r~ 219 (450)
T PRK06002 144 RVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVREFLEDTLADNLK 219 (450)
T ss_pred cceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHHHHhHHHHHHhhC
Confidence 334444 2356888886 89999999999999999999999999988764 56776654 33211 123
Q ss_pred CcEEEEecCCC
Q 005754 151 KRTGFVTQDDI 161 (679)
Q Consensus 151 ~~i~yv~Q~~~ 161 (679)
+.+++|+|.+.
T Consensus 220 rtI~vV~qsd~ 230 (450)
T PRK06002 220 KAVAVVATSDE 230 (450)
T ss_pred CeEEEEEcCCC
Confidence 57999999875
No 485
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.12 E-value=7.4e-05 Score=78.11 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=33.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-..|+++.+-+.+|+++.|.|++|+|||||+..++...
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789988899999999999999999999998887643
No 486
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.10 E-value=3.5e-06 Score=67.75 Aligned_cols=37 Identities=41% Similarity=0.646 Sum_probs=29.7
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 94 LNGITGMVSP-GEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 94 L~~vs~~i~~-Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
+++.++++.+ |+++.|.|||||||||||++|.=.+.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456677775 569999999999999999999865543
No 487
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.08 E-value=7.1e-06 Score=71.46 Aligned_cols=49 Identities=35% Similarity=0.408 Sum_probs=37.7
Q ss_pred cCcccCHHHH-HHHHHHHHH------hh------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 005754 214 FIRGISGGER-KRVSIAHEM------LI------NPSLLILDEPTSGLDSTAAYRLVSTLGS 262 (679)
Q Consensus 214 ~~~~LSgGer-qRv~IA~aL------~~------~P~lllLDEPtsgLD~~~~~~i~~~L~~ 262 (679)
..+++||||| ..+.++.++ -. .|.+++||||+++||+..+..+++.|++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3567999999 555544433 22 3689999999999999999999999874
No 488
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.08 E-value=0.0023 Score=66.03 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=91.8
Q ss_pred HHHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---hhhhchhcccc--ccchHHHHHHHHHHHHHHHHHH
Q 005754 485 AIFMKERASGMY--------TLSSYFMSRIIGDLPVELILPT---VFLIIIYWMTG--FKPEFIAFVQTLLVLLGYVLVS 551 (679)
Q Consensus 485 ~v~~rE~~~g~Y--------~~~ay~la~~l~~lp~~~~~~~---if~~i~Y~~~g--l~~~~~~f~~f~~~~~l~~~~~ 551 (679)
..+.+||++|.. +...+.++|.++-+-..++..+ ++....++... -..+...++..++..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 345556666543 4578999999988755443332 12222221111 1124555555555556667788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcc-cCCC--hhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccC
Q 005754 552 QGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYY-VHKM--PSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCF 628 (679)
Q Consensus 552 ~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~-i~~i--p~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~ 628 (679)
.++|.++|+++.+...|..++..+... ++.|+- +.++ |.+.+|+.|+||..|-.+.. ++. +
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g~------i--- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDGLASLLWGGSAYTISELGLSYHYESIS-----RGV------I--- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHHHhhhcchhHHHHHHHcCHHHHHHHHH-----cCc------c---
Confidence 899999999999988887655433222 222321 2344 88999999999977754422 110 0
Q ss_pred CCCCCccccCcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 005754 629 DRHGSSRDASCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRR 676 (679)
Q Consensus 629 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~ 676 (679)
.+.++.+.+.+.+.+..++...+++
T Consensus 215 -----------------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 -----------------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred -----------------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1345667777777888777776653
No 489
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.07 E-value=1.8e-05 Score=72.84 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEeCCcc
Q 005754 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-----RGKTIVTSMHQPS 278 (679)
Q Consensus 223 rqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~~tH~~~ 278 (679)
++..........++.++++||.-.. ++.....+.+.+..+.. .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444445566778999999998765 66677788888888753 4788999988643
No 490
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=0.0014 Score=68.43 Aligned_cols=201 Identities=15% Similarity=0.179 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHH-ccCchhH-HHH----HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 005754 407 WLNQFSILLHRSLKE-RKHESLN-TLR----VFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLP--SVNAVF 478 (679)
Q Consensus 407 ~~~Q~~~L~~R~~~~-~r~~~~~-~~r----~~~~i~~~ll~G~~f~~~~~~~~~~r~g~lf~~~~~~~~~~--~~~~i~ 478 (679)
.++.++.|.+|.++. .|+..+- .-- +++.++++++.|.+.-.- ..+..-.++.-...+.+.+ ...+..
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~----~~~~~~~l~~G~~~w~f~~~~i~~~~~ 91 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP----GLNFLAYLLAGLILWFFFSEAISEGAG 91 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456778899999986 4655432 222 344445555555554332 1122112222222222221 122334
Q ss_pred HHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 479 AFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLAL 558 (679)
Q Consensus 479 ~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i 558 (679)
.+.+...++.|-+ .++..+.+++++.++-...+..++....+-+.-+.. + ..+..+...+.+..+.+.++|+++
T Consensus 92 s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 92 SVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred HhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554332 288899999999998777776665555555444443 3 344444455556667778888998
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCC
Q 005754 559 GAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGD 617 (679)
Q Consensus 559 sa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~ 617 (679)
|++..-+..-..+.+.++-+++..+|.+=+ ++|.-++|+.++||+.+-.|..=..-+.+
T Consensus 166 a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 166 ASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred HhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 888665555555555666666777776544 89999999999999999999876655554
No 491
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.99 E-value=9.7e-06 Score=82.89 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=48.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeE-EEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGT-ILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLL 178 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~-i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~ 178 (679)
.+..+++|.||||||||||.+.|++++++.++...- +..++........+..+++++.+ .++..++.+.+.+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 456799999999999999999999998764322112 44554333222333457766533 33556777766554443
No 492
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.99 E-value=2.1e-05 Score=87.25 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=67.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCC---Cccc----cc---cCcEEEE----
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN---KPTK----HI---SKRTGFV---- 156 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~---~~~~----~~---~~~i~yv---- 156 (679)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.+.+.|+ +... .+ ..+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 4588988 999999999999999999999999999987432 2356666453 2211 11 1234455
Q ss_pred -ecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005754 157 -TQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203 (679)
Q Consensus 157 -~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 203 (679)
+|++. +.+.+ +...+.-..+..........+...+..++++.++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 77752 23322 333332211111111113356677788889998884
No 493
>PRK08149 ATP synthase SpaL; Validated
Probab=97.98 E-value=1.4e-05 Score=88.22 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=56.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~~ 161 (679)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++....|.|..+|.+... ...+++++|+....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 35789999 9999999999999999999999999999887654455888888876532 12356888876543
No 494
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.97 E-value=0.00011 Score=72.44 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCccccccccCccCcccCHHHHHHHH--HHHHHhh-CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005754 193 AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVS--IAHEMLI-NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266 (679)
Q Consensus 193 v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~--IA~aL~~-~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 266 (679)
+.+.++..++.- -.+.+ ....+|+||+|++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 127 i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 127 MIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 444555555431 12332 34468999999987 5544433 33443 99999999999999999988764
No 495
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.93 E-value=2.6e-05 Score=87.63 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=43.1
Q ss_pred hCCCeEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCcEEEEEeCCccH-------HHHHhCCeEEEEeCCe
Q 005754 234 INPSLLILDEPTSGL----D-----STAAYRLVSTLGSLVQ-RGKTIVTSMHQPSS-------RVYQMFDKVLVLSEGR 295 (679)
Q Consensus 234 ~~P~lllLDEPtsgL----D-----~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~-------~i~~~~D~v~lL~~G~ 295 (679)
.+|+++++|.-++=. + .....+++..|.++++ .|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999876421 1 2234556666777765 59999999996432 1467899999998654
No 496
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.93 E-value=0.00027 Score=72.62 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=34.3
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCcEEEEEeCCcc
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVST-LGSLVQ-RGKTIVTSMHQPS 278 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~-L~~l~~-~g~tii~~tH~~~ 278 (679)
+.+..++|+||+..|=++.....+... ++.|.+ .+..++++||...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 446789999999999999998877554 455777 4889999999864
No 497
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.90 E-value=4.7e-06 Score=83.80 Aligned_cols=28 Identities=39% Similarity=0.516 Sum_probs=26.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++|++++|.||||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999865
No 498
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.89 E-value=1.3e-05 Score=84.65 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=47.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT---NNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~---~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 179 (679)
.++||.||||||||||+++|.+++... +..|.+.+ ||.......++..++. |+..+++.+++.+.+.+...++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~-~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRW-PEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhc-CCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 699999999999999999999987521 11344433 4433322223335543 6666677788888777655443
No 499
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.88 E-value=0.00027 Score=77.40 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=61.8
Q ss_pred ccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC-----CHHHHHH----------HHHHHHHHH-hCCcEEEEEeCCccHH
Q 005754 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGL-----DSTAAYR----------LVSTLGSLV-QRGKTIVTSMHQPSSR 280 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL-----D~~~~~~----------i~~~L~~l~-~~g~tii~~tH~~~~~ 280 (679)
.=||-.-|=.+|..||=...++||+||=||+- |...+.. +.+.+++|. +.|.+.|+++-- +..
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgd 400 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGD 400 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chh
Confidence 46999999999999999999999999999974 4444443 366677774 458766666655 456
Q ss_pred HHHhCCeEEEEeCCeE
Q 005754 281 VYQMFDKVLVLSEGRC 296 (679)
Q Consensus 281 i~~~~D~v~lL~~G~i 296 (679)
.+..+|+|++|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8999999999987554
No 500
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.87 E-value=8.2e-05 Score=81.06 Aligned_cols=28 Identities=39% Similarity=0.568 Sum_probs=25.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++|.+++|.||+||||||+|++|.+.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999999999774
Done!