Query 005754
Match_columns 679
No_of_seqs 463 out of 3164
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:33:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4.8E-48 1.6E-52 415.3 29.0 204 91-306 41-252 (366)
2 2olj_A Amino acid ABC transpor 100.0 1.9E-47 6.5E-52 395.9 29.5 205 90-306 36-247 (263)
3 3rlf_A Maltose/maltodextrin im 100.0 6.8E-48 2.3E-52 416.6 27.2 213 83-307 8-223 (381)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 4E-48 1.4E-52 415.7 24.3 212 84-307 10-228 (359)
5 3tif_A Uncharacterized ABC tra 100.0 2.4E-47 8.3E-52 389.2 28.3 206 91-305 18-232 (235)
6 1b0u_A Histidine permease; ABC 100.0 1.2E-47 4.1E-52 397.7 25.6 207 88-306 16-241 (262)
7 3gfo_A Cobalt import ATP-bindi 100.0 1E-47 3.5E-52 400.3 23.7 205 91-307 21-233 (275)
8 1z47_A CYSA, putative ABC-tran 100.0 3.2E-47 1.1E-51 408.8 26.7 213 82-306 18-234 (355)
9 1vpl_A ABC transporter, ATP-bi 100.0 2.6E-47 8.8E-52 393.6 24.8 209 87-307 24-235 (256)
10 2pcj_A ABC transporter, lipopr 100.0 4.1E-47 1.4E-51 384.9 24.5 202 88-302 14-223 (224)
11 2it1_A 362AA long hypothetical 100.0 7.5E-47 2.6E-51 407.2 26.7 212 84-307 9-223 (362)
12 1g6h_A High-affinity branched- 100.0 2.2E-47 7.4E-52 394.8 20.7 208 88-304 17-239 (257)
13 2yyz_A Sugar ABC transporter, 100.0 5.9E-47 2E-51 407.6 24.8 211 85-307 10-223 (359)
14 1g29_1 MALK, maltose transport 100.0 1.4E-46 4.9E-51 407.0 27.3 210 86-307 11-229 (372)
15 1oxx_K GLCV, glucose, ABC tran 100.0 6.9E-47 2.3E-51 407.0 24.2 209 86-306 11-229 (353)
16 1ji0_A ABC transporter; ATP bi 100.0 5.7E-47 2E-51 387.7 21.5 206 88-306 16-227 (240)
17 4g1u_C Hemin import ATP-bindin 100.0 7.4E-47 2.5E-51 392.4 22.0 204 89-306 22-236 (266)
18 1v43_A Sugar-binding transport 100.0 1.2E-46 4.3E-51 406.9 23.4 209 87-307 20-231 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 3.7E-46 1.3E-50 400.1 22.7 208 83-306 6-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 8.5E-46 2.9E-50 378.8 22.7 206 84-306 7-215 (240)
21 2ihy_A ABC transporter, ATP-bi 100.0 6.5E-46 2.2E-50 387.8 22.2 207 90-305 33-250 (279)
22 2yz2_A Putative ABC transporte 100.0 1E-45 3.5E-50 384.1 21.4 204 91-307 20-227 (266)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 1.4E-45 4.9E-50 379.6 20.1 208 88-304 13-230 (250)
24 2nq2_C Hypothetical ABC transp 100.0 1.5E-44 5.1E-49 372.5 25.3 197 90-305 17-215 (253)
25 2zu0_C Probable ATP-dependent 100.0 2.1E-44 7.2E-49 374.3 25.4 218 89-314 31-260 (267)
26 2ff7_A Alpha-hemolysin translo 100.0 1.5E-44 5.2E-49 371.2 19.7 201 90-306 21-231 (247)
27 2ixe_A Antigen peptide transpo 100.0 1E-44 3.5E-49 377.4 18.5 202 91-307 32-245 (271)
28 2qi9_C Vitamin B12 import ATP- 100.0 3.5E-44 1.2E-48 368.7 21.5 196 92-305 14-220 (249)
29 3nh6_A ATP-binding cassette SU 100.0 2.7E-44 9.2E-49 379.5 20.8 200 91-307 67-277 (306)
30 1mv5_A LMRA, multidrug resista 100.0 2.3E-44 7.8E-49 369.1 16.8 204 89-307 13-226 (243)
31 2ghi_A Transport protein; mult 100.0 7.8E-43 2.7E-47 361.2 22.5 199 91-307 33-242 (260)
32 1sgw_A Putative ABC transporte 100.0 5.7E-44 2E-48 358.9 13.4 196 83-296 15-210 (214)
33 2pjz_A Hypothetical protein ST 100.0 3.7E-43 1.3E-47 363.8 19.2 193 91-306 18-214 (263)
34 2pze_A Cystic fibrosis transme 100.0 3.9E-42 1.3E-46 349.5 19.7 190 90-306 20-217 (229)
35 2cbz_A Multidrug resistance-as 100.0 5E-42 1.7E-46 350.4 19.7 196 91-307 18-217 (237)
36 3gd7_A Fusion complex of cysti 100.0 2E-42 6.9E-47 376.2 14.4 200 90-307 33-242 (390)
37 2yl4_A ATP-binding cassette SU 100.0 3.3E-40 1.1E-44 379.6 25.4 202 91-306 357-569 (595)
38 3b60_A Lipid A export ATP-bind 100.0 1.5E-40 5E-45 381.6 22.2 201 91-307 356-567 (582)
39 4a82_A Cystic fibrosis transme 100.0 9.8E-41 3.4E-45 382.6 20.6 200 91-307 354-564 (578)
40 3b5x_A Lipid A export ATP-bind 100.0 1.1E-40 3.8E-45 382.6 19.4 201 91-307 356-567 (582)
41 3qf4_A ABC transporter, ATP-bi 100.0 1.4E-40 4.8E-45 381.8 20.1 200 91-307 356-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 2.4E-40 8.1E-45 380.8 15.2 200 91-307 368-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 3E-39 1E-43 339.0 19.8 188 91-306 51-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 3.3E-39 1.1E-43 399.9 16.1 202 91-307 1092-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 1E-37 3.5E-42 386.5 22.1 201 90-307 430-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 2.6E-37 9E-42 382.0 18.9 202 91-307 403-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 1E-36 3.5E-41 376.7 20.3 206 91-307 1046-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 4.2E-36 1.4E-40 344.3 21.9 202 80-307 359-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 4.6E-36 1.6E-40 340.4 18.6 202 81-308 290-494 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 4E-35 1.4E-39 332.1 20.2 202 81-306 272-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2.1E-34 7.1E-39 329.9 21.2 201 83-308 351-560 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 8.5E-35 2.9E-39 339.0 17.4 209 90-306 30-297 (670)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-34 3.7E-39 329.1 13.3 191 82-294 25-234 (538)
54 2iw3_A Elongation factor 3A; a 100.0 9.7E-34 3.3E-38 335.7 21.0 193 83-307 440-635 (986)
55 3bk7_A ABC transporter ATP-bin 100.0 1.3E-34 4.4E-39 332.1 12.9 192 82-295 95-305 (607)
56 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-32 7.1E-37 318.9 20.3 201 91-306 335-639 (670)
57 2iw3_A Elongation factor 3A; a 100.0 4.7E-33 1.6E-37 329.9 12.9 192 91-301 686-981 (986)
58 3j16_B RLI1P; ribosome recycli 100.0 2.1E-31 7.1E-36 305.1 12.6 197 82-298 81-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.4E-31 4.8E-36 303.0 9.1 190 85-297 6-216 (538)
60 3pih_A Uvrabc system protein A 100.0 7.2E-30 2.4E-34 302.4 23.6 201 91-306 597-901 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 4.4E-30 1.5E-34 302.2 17.1 199 92-306 638-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1E-29 3.5E-34 298.8 17.7 197 93-305 512-825 (842)
63 2ygr_A Uvrabc system protein A 100.0 1.9E-29 6.5E-34 297.9 17.9 200 92-307 656-960 (993)
64 4aby_A DNA repair protein RECN 100.0 7.9E-28 2.7E-32 264.3 19.1 206 90-300 47-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.4E-31 4.8E-36 297.4 -11.1 185 95-305 129-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.7E-25 9.3E-30 240.6 16.7 84 213-298 275-364 (365)
67 3b85_A Phosphate starvation-in 99.9 4.4E-28 1.5E-32 242.3 -7.0 146 86-278 8-159 (208)
68 1e69_A Chromosome segregation 99.9 4.2E-24 1.4E-28 227.5 11.8 89 214-305 216-311 (322)
69 4gp7_A Metallophosphoesterase; 99.9 7.4E-25 2.5E-29 212.0 5.4 143 96-278 1-160 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 1.6E-26 5.5E-31 252.8 -12.6 170 91-288 36-247 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 4.9E-24 1.7E-28 207.9 4.8 148 106-298 2-159 (178)
72 2v9p_A Replication protein E1; 99.9 7.3E-27 2.5E-31 245.8 -18.1 168 80-312 103-271 (305)
73 1znw_A Guanylate kinase, GMP k 99.9 1.1E-26 3.8E-31 231.5 -17.1 183 89-293 7-203 (207)
74 3b9q_A Chloroplast SRP recepto 99.9 3.2E-23 1.1E-27 218.6 0.6 174 93-296 89-284 (302)
75 2dpy_A FLII, flagellum-specifi 99.8 2.4E-23 8.1E-28 230.1 -2.8 190 77-305 130-342 (438)
76 2vf7_A UVRA2, excinuclease ABC 99.8 8.6E-21 2.9E-25 223.2 18.4 110 189-306 356-474 (842)
77 2o5v_A DNA replication and rep 99.8 1.1E-20 3.8E-25 203.4 13.0 86 212-305 259-354 (359)
78 3qkt_A DNA double-strand break 99.8 3.4E-20 1.2E-24 198.7 16.7 78 213-292 244-327 (339)
79 2og2_A Putative signal recogni 99.8 6E-22 2.1E-26 213.0 1.4 172 95-296 148-341 (359)
80 3sop_A Neuronal-specific septi 99.8 4.3E-23 1.5E-27 214.3 -7.6 146 106-277 4-150 (270)
81 2pt7_A CAG-ALFA; ATPase, prote 99.8 6.5E-22 2.2E-26 211.2 -0.7 133 91-296 158-292 (330)
82 1z6g_A Guanylate kinase; struc 99.8 1.9E-24 6.4E-29 217.5 -19.3 154 91-265 10-175 (218)
83 3aez_A Pantothenate kinase; tr 99.8 1E-23 3.5E-28 223.3 -15.2 123 101-250 87-209 (312)
84 1cr0_A DNA primase/helicase; R 99.8 5E-21 1.7E-25 200.8 3.7 184 91-296 22-237 (296)
85 2jeo_A Uridine-cytidine kinase 99.8 1.6E-21 5.5E-26 199.2 -0.6 180 88-309 9-189 (245)
86 3pih_A Uvrabc system protein A 99.8 3.1E-20 1E-24 220.2 9.6 138 163-307 409-560 (916)
87 4ad8_A DNA repair protein RECN 99.8 1.2E-19 4E-24 205.3 12.5 78 214-294 393-473 (517)
88 2obl_A ESCN; ATPase, hydrolase 99.8 2.5E-20 8.5E-25 200.0 4.8 190 78-305 45-253 (347)
89 1tf7_A KAIC; homohexamer, hexa 99.8 1.6E-19 5.4E-24 204.6 10.3 156 98-295 275-444 (525)
90 2o8b_B DNA mismatch repair pro 99.8 1.9E-20 6.7E-25 225.3 1.9 165 84-303 761-938 (1022)
91 1tf7_A KAIC; homohexamer, hexa 99.8 4.6E-22 1.6E-26 225.4 -12.0 172 86-294 20-210 (525)
92 2r6f_A Excinuclease ABC subuni 99.8 1.1E-18 3.6E-23 205.9 15.8 135 164-306 450-599 (972)
93 3thx_A DNA mismatch repair pro 99.8 4.4E-19 1.5E-23 211.2 10.0 161 89-305 647-811 (934)
94 2ygr_A Uvrabc system protein A 99.8 1.5E-18 5.3E-23 205.2 13.9 137 163-307 466-617 (993)
95 2ehv_A Hypothetical protein PH 99.8 8.3E-20 2.8E-24 185.4 0.6 161 100-292 26-206 (251)
96 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 2.3E-18 7.8E-23 162.6 9.9 83 212-296 52-142 (148)
97 2eyu_A Twitching motility prot 99.7 4.4E-19 1.5E-23 183.2 3.7 133 92-293 15-147 (261)
98 4a74_A DNA repair and recombin 99.7 3.9E-19 1.3E-23 178.1 1.5 154 99-295 20-201 (231)
99 3thx_B DNA mismatch repair pro 99.7 2.7E-18 9.3E-23 203.9 6.2 155 90-298 659-816 (918)
100 3asz_A Uridine kinase; cytidin 99.7 2E-20 6.8E-25 186.0 -10.5 146 101-278 3-162 (211)
101 2qnr_A Septin-2, protein NEDD5 99.7 1.1E-19 3.6E-24 191.7 -6.4 162 83-278 3-168 (301)
102 1ewq_A DNA mismatch repair pro 99.7 2.7E-18 9.3E-23 201.0 4.6 134 89-285 564-704 (765)
103 1rj9_A FTSY, signal recognitio 99.7 3.7E-18 1.3E-22 180.0 0.6 148 103-278 101-259 (304)
104 1wb9_A DNA mismatch repair pro 99.7 8.8E-18 3E-22 197.7 3.5 158 89-301 593-752 (800)
105 1pzn_A RAD51, DNA repair and r 99.6 8.1E-18 2.8E-22 180.9 -0.9 165 93-300 119-308 (349)
106 1nlf_A Regulatory protein REPA 99.6 8E-16 2.7E-20 159.9 12.4 151 100-278 26-182 (279)
107 2w0m_A SSO2452; RECA, SSPF, un 99.6 3E-17 1E-21 164.1 0.9 167 91-294 9-192 (235)
108 2i3b_A HCR-ntpase, human cance 99.6 1.6E-18 5.6E-23 170.4 -8.7 156 104-300 1-169 (189)
109 2qag_C Septin-7; cell cycle, c 99.6 3.2E-17 1.1E-21 179.8 -1.8 161 79-276 12-176 (418)
110 1s96_A Guanylate kinase, GMP k 99.6 3.8E-17 1.3E-21 164.3 -1.2 152 97-311 9-164 (219)
111 3jvv_A Twitching mobility prot 99.6 2.6E-16 8.8E-21 169.4 4.9 134 92-294 113-246 (356)
112 3szr_A Interferon-induced GTP- 99.6 3.4E-17 1.2E-21 188.3 -5.0 165 107-308 48-238 (608)
113 1pui_A ENGB, probable GTP-bind 99.6 8.8E-16 3E-20 151.5 3.0 172 82-269 7-202 (210)
114 3kta_B Chromosome segregation 99.5 1.3E-14 4.3E-19 140.5 10.4 90 214-306 61-157 (173)
115 2qag_B Septin-6, protein NEDD5 99.5 1.4E-15 4.8E-20 166.3 2.3 175 85-276 22-218 (427)
116 2cvh_A DNA repair and recombin 99.5 7.8E-14 2.7E-18 138.4 14.5 153 93-294 8-185 (220)
117 2bdt_A BH3686; alpha-beta prot 99.5 1.2E-17 3.9E-22 163.2 -15.3 169 104-305 2-182 (189)
118 1zp6_A Hypothetical protein AT 99.5 7.7E-17 2.6E-21 157.1 -12.0 153 100-275 5-159 (191)
119 2ewv_A Twitching motility prot 99.5 7.6E-15 2.6E-19 159.0 2.0 132 92-292 126-257 (372)
120 2gza_A Type IV secretion syste 99.4 1.2E-14 4.2E-19 156.8 1.8 137 93-295 164-303 (361)
121 2bbw_A Adenylate kinase 4, AK4 99.4 6.7E-17 2.3E-21 164.8 -15.7 152 103-266 26-199 (246)
122 1htw_A HI0065; nucleotide-bind 99.4 2.3E-15 7.9E-20 143.6 -4.4 85 83-174 12-97 (158)
123 1lw7_A Transcriptional regulat 99.4 1.6E-16 5.5E-21 171.7 -15.0 172 93-292 157-342 (365)
124 3auy_A DNA double-strand break 99.4 5.8E-13 2E-17 144.2 12.5 78 213-293 276-360 (371)
125 2rcn_A Probable GTPase ENGC; Y 99.4 6.7E-14 2.3E-18 150.1 4.9 139 94-265 206-346 (358)
126 1n0w_A DNA repair protein RAD5 99.4 1.7E-13 5.9E-18 138.1 6.8 153 99-294 19-209 (243)
127 1nij_A Hypothetical protein YJ 99.4 4.1E-17 1.4E-21 173.2 -20.9 163 105-286 5-197 (318)
128 2f1r_A Molybdopterin-guanine d 99.4 2E-15 6.7E-20 146.0 -8.1 138 105-267 3-163 (171)
129 2qm8_A GTPase/ATPase; G protei 99.4 7.1E-16 2.4E-20 165.0 -12.9 173 79-265 30-260 (337)
130 2yhs_A FTSY, cell division pro 99.4 1.6E-14 5.4E-19 160.0 -3.0 153 94-276 283-448 (503)
131 3e70_C DPA, signal recognition 99.3 1.9E-13 6.6E-18 145.3 2.9 142 102-277 127-279 (328)
132 1w1w_A Structural maintenance 99.3 2.6E-12 8.8E-17 141.8 10.8 76 215-292 331-410 (430)
133 2kjq_A DNAA-related protein; s 99.3 1.1E-12 3.8E-17 123.7 6.1 97 92-278 29-126 (149)
134 1udx_A The GTP-binding protein 99.3 7.3E-14 2.5E-18 153.0 -2.9 170 94-288 147-319 (416)
135 1odf_A YGR205W, hypothetical 3 99.3 9.9E-14 3.4E-18 145.2 -2.5 131 102-252 29-169 (290)
136 3ec2_A DNA replication protein 99.3 3E-12 1E-16 123.7 8.2 48 232-279 97-145 (180)
137 1p9r_A General secretion pathw 99.3 9.7E-15 3.3E-19 160.2 -14.1 149 78-241 143-315 (418)
138 3lda_A DNA repair protein RAD5 99.2 2.4E-11 8.4E-16 132.4 11.7 154 99-295 173-364 (400)
139 1sxj_E Activator 1 40 kDa subu 99.2 1.1E-11 3.6E-16 132.4 6.9 135 107-279 39-176 (354)
140 2yv5_A YJEQ protein; hydrolase 99.2 5.9E-13 2E-17 140.2 -3.2 121 101-231 162-301 (302)
141 3c8u_A Fructokinase; YP_612366 99.2 1.2E-13 4E-18 137.2 -8.3 165 101-310 19-184 (208)
142 2oap_1 GSPE-2, type II secreti 99.2 3.7E-14 1.3E-18 159.5 -14.0 176 91-286 247-458 (511)
143 1in4_A RUVB, holliday junction 99.1 2.6E-13 8.8E-18 144.8 -9.4 178 80-287 20-211 (334)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 5.5E-14 1.9E-18 152.7 -16.6 171 100-304 16-210 (392)
145 2x8a_A Nuclear valosin-contain 99.0 1.1E-13 3.9E-18 143.6 -18.5 143 88-259 30-189 (274)
146 2dr3_A UPF0273 protein PH0284; 99.0 1E-10 3.5E-15 117.8 2.5 60 234-293 127-196 (247)
147 1lvg_A Guanylate kinase, GMP k 99.0 7.8E-14 2.7E-18 137.7 -20.1 57 228-293 116-173 (198)
148 1t9h_A YLOQ, probable GTPase E 99.0 5.1E-11 1.8E-15 125.3 -0.8 118 99-225 168-303 (307)
149 1u0l_A Probable GTPase ENGC; p 98.9 1.2E-10 4E-15 122.5 1.1 106 100-220 165-294 (301)
150 1sq5_A Pantothenate kinase; P- 98.9 2.6E-11 8.9E-16 127.9 -4.9 94 79-178 38-155 (308)
151 2r6a_A DNAB helicase, replicat 98.9 6E-09 2E-13 115.6 11.4 180 91-296 190-401 (454)
152 1vma_A Cell division protein F 98.9 7.6E-10 2.6E-14 116.5 3.8 113 97-264 97-212 (306)
153 2px0_A Flagellar biosynthesis 98.8 5.2E-09 1.8E-13 109.6 8.9 141 102-299 103-247 (296)
154 2zr9_A Protein RECA, recombina 98.8 5.3E-09 1.8E-13 112.1 9.1 148 99-301 56-237 (349)
155 1ls1_A Signal recognition part 98.8 5E-09 1.7E-13 109.7 8.2 127 84-263 82-209 (295)
156 1iy2_A ATP-dependent metallopr 98.8 9.7E-13 3.3E-17 136.4 -20.9 130 84-238 55-190 (278)
157 3tr0_A Guanylate kinase, GMP k 98.8 2.8E-10 9.6E-15 111.6 -3.0 67 98-171 1-71 (205)
158 1ixz_A ATP-dependent metallopr 98.8 1.4E-12 4.8E-17 133.1 -20.6 130 84-238 31-166 (254)
159 2ius_A DNA translocase FTSK; n 98.8 4.7E-10 1.6E-14 125.5 -2.5 165 96-278 159-343 (512)
160 3k1j_A LON protease, ATP-depen 98.7 1.4E-10 4.9E-15 133.2 -8.1 167 83-262 39-227 (604)
161 3euj_A Chromosome partition pr 98.7 3.5E-09 1.2E-13 117.6 2.1 52 90-145 16-67 (483)
162 1oix_A RAS-related protein RAB 98.6 4.9E-09 1.7E-13 101.9 1.2 38 224-263 152-189 (191)
163 3lnc_A Guanylate kinase, GMP k 98.6 1.1E-09 3.6E-14 110.2 -4.7 39 91-129 14-53 (231)
164 3hr8_A Protein RECA; alpha and 98.5 7.3E-08 2.5E-12 103.3 5.3 37 93-129 48-86 (356)
165 1svm_A Large T antigen; AAA+ f 98.5 1E-10 3.5E-15 126.5 -17.2 144 91-246 156-312 (377)
166 2ce7_A Cell division protein F 98.4 1.4E-07 4.7E-12 105.0 6.4 59 220-278 93-165 (476)
167 1qhl_A Protein (cell division 98.4 1.4E-08 4.9E-13 102.1 -3.9 58 98-159 22-91 (227)
168 2xau_A PRE-mRNA-splicing facto 98.4 5E-07 1.7E-11 106.5 8.5 74 215-289 188-263 (773)
169 4eun_A Thermoresistant glucoki 98.4 1.7E-08 5.9E-13 99.0 -3.4 63 91-160 16-81 (200)
170 2qtf_A Protein HFLX, GTP-bindi 98.3 7E-07 2.4E-11 96.1 8.2 152 103-265 177-353 (364)
171 2f9l_A RAB11B, member RAS onco 98.3 3.5E-07 1.2E-11 89.1 4.7 37 226-264 130-166 (199)
172 2j41_A Guanylate kinase; GMP, 98.2 5.5E-07 1.9E-11 87.9 3.3 31 100-130 2-32 (207)
173 4a1f_A DNAB helicase, replicat 98.2 1.2E-06 4E-11 93.2 5.7 129 92-275 34-164 (338)
174 3uie_A Adenylyl-sulfate kinase 98.1 3.1E-08 1.1E-12 97.2 -6.8 52 89-144 10-63 (200)
175 3nwj_A ATSK2; P loop, shikimat 98.1 1.5E-07 5.1E-12 96.1 -2.3 49 81-129 20-73 (250)
176 2e87_A Hypothetical protein PH 98.1 5.1E-06 1.8E-10 89.0 9.0 61 216-278 230-293 (357)
177 2dhr_A FTSH; AAA+ protein, hex 98.1 8.1E-09 2.8E-13 115.5 -13.8 132 88-246 50-187 (499)
178 1fnn_A CDC6P, cell division co 98.1 9E-06 3.1E-10 87.0 10.5 44 234-278 124-170 (389)
179 1jjv_A Dephospho-COA kinase; P 98.1 4.6E-07 1.6E-11 88.9 0.1 81 218-309 60-141 (206)
180 1kgd_A CASK, peripheral plasma 98.0 1.4E-06 4.8E-11 83.9 2.4 28 102-129 3-30 (180)
181 3vaa_A Shikimate kinase, SK; s 98.0 1.7E-06 5.8E-11 84.6 2.8 39 90-128 11-49 (199)
182 3kta_A Chromosome segregation 98.0 2.5E-06 8.4E-11 81.8 3.9 35 95-130 18-52 (182)
183 4e22_A Cytidylate kinase; P-lo 98.0 3.9E-07 1.3E-11 92.9 -2.3 63 92-160 18-96 (252)
184 1zu4_A FTSY; GTPase, signal re 98.0 1.1E-06 3.9E-11 92.8 0.8 76 94-172 95-184 (320)
185 3t34_A Dynamin-related protein 97.9 2.7E-05 9.4E-10 83.3 10.8 57 218-275 155-212 (360)
186 2z4s_A Chromosomal replication 97.9 2E-06 6.8E-11 94.9 1.7 95 234-330 193-295 (440)
187 3b9p_A CG5977-PA, isoform A; A 97.9 6.7E-05 2.3E-09 77.5 13.1 73 219-291 97-186 (297)
188 3a00_A Guanylate kinase, GMP k 97.9 2.9E-06 1E-10 82.0 2.3 27 104-130 1-27 (186)
189 1ega_A Protein (GTP-binding pr 97.8 9.8E-06 3.3E-10 84.8 5.0 63 218-288 101-169 (301)
190 3tau_A Guanylate kinase, GMP k 97.8 6.9E-06 2.4E-10 80.9 3.3 29 102-130 6-34 (208)
191 1v5w_A DMC1, meiotic recombina 97.8 7.6E-05 2.6E-09 79.5 11.6 139 99-277 117-274 (343)
192 3bh0_A DNAB-like replicative h 97.8 1.5E-05 5.2E-10 83.9 6.0 133 91-276 55-190 (315)
193 2z43_A DNA repair and recombin 97.8 7.9E-05 2.7E-09 78.6 11.5 138 99-276 102-257 (324)
194 3tqc_A Pantothenate kinase; bi 97.8 1.8E-06 6.3E-11 91.1 -2.3 44 86-129 68-117 (321)
195 2vp4_A Deoxynucleoside kinase; 97.7 8.4E-06 2.9E-10 81.6 2.3 38 100-144 16-53 (230)
196 2dy1_A Elongation factor G; tr 97.7 1.3E-05 4.5E-10 92.9 3.7 131 98-278 3-137 (665)
197 2qt1_A Nicotinamide riboside k 97.7 2.2E-05 7.5E-10 76.9 4.0 29 100-128 17-45 (207)
198 2qby_A CDC6 homolog 1, cell di 97.6 1.3E-05 4.6E-10 85.2 1.8 28 102-129 43-70 (386)
199 1knq_A Gluconate kinase; ALFA/ 97.5 5.4E-05 1.8E-09 71.8 3.4 27 102-128 6-32 (175)
200 1kag_A SKI, shikimate kinase I 97.5 4.4E-05 1.5E-09 72.1 2.7 27 103-129 3-29 (173)
201 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 6.5E-05 2.2E-09 70.2 3.8 30 96-126 16-45 (149)
202 3ney_A 55 kDa erythrocyte memb 97.4 4.6E-05 1.6E-09 74.7 2.8 28 102-129 17-44 (197)
203 3kl4_A SRP54, signal recogniti 97.4 0.00045 1.6E-08 75.7 10.8 125 103-276 96-223 (433)
204 3llm_A ATP-dependent RNA helic 97.4 6.1E-05 2.1E-09 75.5 3.1 67 219-287 162-229 (235)
205 1rz3_A Hypothetical protein rb 97.4 4.9E-05 1.7E-09 74.3 2.0 30 101-130 19-48 (201)
206 3lxx_A GTPase IMAP family memb 97.4 0.00086 2.9E-08 67.0 11.0 43 234-276 111-155 (239)
207 2p67_A LAO/AO transport system 97.3 1.7E-05 6E-10 84.4 -1.8 49 82-130 34-82 (341)
208 3cf0_A Transitional endoplasmi 97.3 0.00053 1.8E-08 71.4 9.4 29 100-128 45-73 (301)
209 1w1w_A Structural maintenance 97.3 9.3E-05 3.2E-09 81.2 3.4 32 99-130 21-52 (430)
210 3cr8_A Sulfate adenylyltranfer 97.2 6.7E-05 2.3E-09 84.8 1.2 43 100-144 365-408 (552)
211 1ypw_A Transitional endoplasmi 97.2 0.00021 7.1E-09 84.7 5.4 30 100-129 234-263 (806)
212 3m6a_A ATP-dependent protease 97.2 3.1E-05 1.1E-09 87.6 -1.7 56 83-142 88-143 (543)
213 1u94_A RECA protein, recombina 97.2 0.0055 1.9E-07 65.4 15.8 34 94-127 51-86 (356)
214 1l8q_A Chromosomal replication 97.2 0.00079 2.7E-08 70.5 8.8 45 233-277 96-141 (324)
215 3bos_A Putative DNA replicatio 97.1 0.00026 9E-09 69.8 4.5 44 234-277 103-148 (242)
216 3qks_A DNA double-strand break 97.1 0.00028 9.5E-09 69.3 3.8 31 96-127 16-46 (203)
217 4eaq_A DTMP kinase, thymidylat 97.1 0.00019 6.6E-09 71.9 2.7 38 93-130 12-52 (229)
218 2i1q_A DNA repair and recombin 97.0 0.0036 1.2E-07 65.6 12.2 28 99-126 93-120 (322)
219 2w58_A DNAI, primosome compone 97.0 0.0014 4.6E-08 63.5 8.1 25 105-129 55-79 (202)
220 3h4m_A Proteasome-activating n 97.0 0.00089 3E-08 68.5 6.8 28 101-128 48-75 (285)
221 2b8t_A Thymidine kinase; deoxy 97.0 0.0018 6.2E-08 64.6 8.6 53 235-292 89-150 (223)
222 1cke_A CK, MSSA, protein (cyti 96.9 0.0004 1.4E-08 68.5 3.5 57 104-160 5-74 (227)
223 2pez_A Bifunctional 3'-phospho 96.9 0.00044 1.5E-08 65.8 3.6 28 102-129 3-30 (179)
224 2q6t_A DNAB replication FORK h 96.9 0.002 6.9E-08 70.8 9.2 130 92-275 188-318 (444)
225 4fcw_A Chaperone protein CLPB; 96.9 0.0011 3.6E-08 68.7 6.1 25 105-129 48-72 (311)
226 1np6_A Molybdopterin-guanine d 96.8 0.00061 2.1E-08 65.4 3.8 38 105-142 7-44 (174)
227 1m2o_B GTP-binding protein SAR 96.8 0.0012 4.2E-08 63.3 5.5 36 91-127 11-46 (190)
228 3d8b_A Fidgetin-like protein 1 96.8 0.0065 2.2E-07 64.7 11.7 27 102-128 115-141 (357)
229 2www_A Methylmalonic aciduria 96.8 0.00061 2.1E-08 72.7 3.5 29 102-130 72-100 (349)
230 2qor_A Guanylate kinase; phosp 96.8 0.00056 1.9E-08 66.7 3.0 29 100-128 8-36 (204)
231 3ice_A Transcription terminati 96.7 0.00047 1.6E-08 74.0 2.4 51 78-128 133-198 (422)
232 1y63_A LMAJ004144AAA protein; 96.7 0.0006 2E-08 65.4 2.9 32 96-127 2-33 (184)
233 2v1u_A Cell division control p 96.7 0.0018 6.1E-08 68.6 6.9 27 102-128 42-68 (387)
234 3bgw_A DNAB-like replicative h 96.7 0.0036 1.2E-07 68.9 9.4 35 93-127 186-220 (444)
235 2gj8_A MNME, tRNA modification 96.7 0.00082 2.8E-08 63.5 3.3 27 102-128 2-28 (172)
236 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0059 2E-07 61.2 9.8 27 102-128 37-63 (262)
237 1sxj_C Activator 1 40 kDa subu 96.7 0.00018 6.3E-09 76.0 -1.5 47 84-130 24-72 (340)
238 2if2_A Dephospho-COA kinase; a 96.6 0.00081 2.8E-08 65.3 2.8 21 106-126 3-23 (204)
239 1mky_A Probable GTP-binding pr 96.6 0.0015 5.1E-08 71.7 5.2 39 106-144 182-229 (439)
240 2qag_A Septin-2, protein NEDD5 96.6 0.00042 1.4E-08 74.2 0.5 44 80-129 19-62 (361)
241 3auy_A DNA double-strand break 96.5 0.0012 4.1E-08 70.8 3.9 31 94-125 16-46 (371)
242 2ffh_A Protein (FFH); SRP54, s 96.4 0.00071 2.4E-08 74.0 1.2 53 85-144 83-135 (425)
243 2ga8_A Hypothetical 39.9 kDa p 96.4 0.00022 7.6E-09 75.9 -2.8 39 91-129 9-49 (359)
244 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.031 1E-06 58.6 13.7 27 102-128 43-69 (322)
245 2yvu_A Probable adenylyl-sulfa 96.4 0.0017 5.9E-08 62.1 3.5 28 102-129 11-38 (186)
246 3lxw_A GTPase IMAP family memb 96.4 0.0065 2.2E-07 61.2 8.0 24 106-129 23-46 (247)
247 1m7g_A Adenylylsulfate kinase; 96.3 0.0015 5E-08 64.1 2.8 29 101-129 22-50 (211)
248 3cm0_A Adenylate kinase; ATP-b 96.3 0.0019 6.4E-08 61.5 3.5 26 102-127 2-27 (186)
249 2wji_A Ferrous iron transport 96.3 0.0019 6.6E-08 60.2 3.4 23 106-128 5-27 (165)
250 3t61_A Gluconokinase; PSI-biol 96.3 0.0016 5.3E-08 63.2 2.8 25 104-128 18-42 (202)
251 2r8r_A Sensor protein; KDPD, P 96.2 0.0027 9.3E-08 63.3 3.9 80 231-317 80-181 (228)
252 1f6b_A SAR1; gtpases, N-termin 96.2 0.00044 1.5E-08 67.0 -1.9 36 91-127 13-48 (198)
253 3kb2_A SPBC2 prophage-derived 96.1 0.0026 8.9E-08 59.4 3.3 23 106-128 3-25 (173)
254 1q57_A DNA primase/helicase; d 96.1 0.087 3E-06 58.6 16.3 34 93-126 231-264 (503)
255 1xp8_A RECA protein, recombina 96.1 0.075 2.6E-06 56.8 15.0 27 100-126 70-96 (366)
256 1qhx_A CPT, protein (chloramph 96.1 0.003 1E-07 59.6 3.6 26 104-129 3-28 (178)
257 1q3t_A Cytidylate kinase; nucl 96.1 0.0027 9.3E-08 63.3 3.4 28 101-128 13-40 (236)
258 2qgz_A Helicase loader, putati 96.0 0.0054 1.9E-07 64.0 5.5 52 233-284 212-265 (308)
259 1lv7_A FTSH; alpha/beta domain 96.0 0.0021 7E-08 64.9 2.2 35 93-129 36-70 (257)
260 3cmw_A Protein RECA, recombina 96.0 0.02 7E-07 72.0 11.4 29 100-128 728-756 (1706)
261 2wjg_A FEOB, ferrous iron tran 96.0 0.0031 1.1E-07 59.7 3.1 22 106-127 9-30 (188)
262 2zej_A Dardarin, leucine-rich 96.0 0.003 1E-07 60.0 3.1 23 106-128 4-26 (184)
263 1xx6_A Thymidine kinase; NESG, 95.9 0.025 8.5E-07 54.9 9.3 53 235-292 81-142 (191)
264 1kht_A Adenylate kinase; phosp 95.9 0.004 1.4E-07 59.2 3.5 25 104-128 3-27 (192)
265 2chg_A Replication factor C sm 95.9 0.023 7.7E-07 54.5 8.7 41 235-277 102-142 (226)
266 3r20_A Cytidylate kinase; stru 95.9 0.0041 1.4E-07 62.5 3.4 25 104-128 9-33 (233)
267 2rhm_A Putative kinase; P-loop 95.8 0.0038 1.3E-07 59.5 2.9 27 102-128 3-29 (193)
268 1xjc_A MOBB protein homolog; s 95.8 0.0044 1.5E-07 59.0 3.3 25 105-129 5-29 (169)
269 1j8m_F SRP54, signal recogniti 95.8 0.0012 4E-08 68.9 -0.9 35 95-130 89-124 (297)
270 2ze6_A Isopentenyl transferase 95.8 0.0046 1.6E-07 62.6 3.4 24 105-128 2-25 (253)
271 2p5t_B PEZT; postsegregational 95.7 0.0032 1.1E-07 63.6 2.2 36 93-129 22-57 (253)
272 1vht_A Dephospho-COA kinase; s 95.7 0.0051 1.8E-07 60.3 3.6 24 103-126 3-26 (218)
273 2ohf_A Protein OLA1, GTP-bindi 95.7 0.0043 1.5E-07 67.1 3.1 29 99-127 17-45 (396)
274 3lw7_A Adenylate kinase relate 95.7 0.0052 1.8E-07 57.1 3.3 19 106-124 3-21 (179)
275 3co5_A Putative two-component 95.7 0.02 6.9E-07 52.3 7.2 42 235-277 75-116 (143)
276 3trf_A Shikimate kinase, SK; a 95.6 0.0061 2.1E-07 57.9 3.4 26 103-128 4-29 (185)
277 2v54_A DTMP kinase, thymidylat 95.6 0.0064 2.2E-07 58.5 3.6 26 103-128 3-28 (204)
278 1ex7_A Guanylate kinase; subst 95.6 0.0056 1.9E-07 59.3 3.1 23 106-128 3-25 (186)
279 2jaq_A Deoxyguanosine kinase; 95.6 0.0063 2.1E-07 58.4 3.4 24 106-129 2-25 (205)
280 3iij_A Coilin-interacting nucl 95.6 0.0056 1.9E-07 58.0 3.0 26 103-128 10-35 (180)
281 2plr_A DTMP kinase, probable t 95.5 0.0073 2.5E-07 58.3 3.7 27 103-129 3-29 (213)
282 2j9r_A Thymidine kinase; TK1, 95.5 0.025 8.6E-07 55.8 7.6 53 235-292 101-162 (214)
283 1ly1_A Polynucleotide kinase; 95.5 0.0078 2.7E-07 56.5 3.5 22 105-126 3-24 (181)
284 2qp9_X Vacuolar protein sortin 95.4 0.05 1.7E-06 57.8 10.1 27 102-128 82-108 (355)
285 1gvn_B Zeta; postsegregational 95.4 0.0073 2.5E-07 62.4 3.4 27 102-128 31-57 (287)
286 1via_A Shikimate kinase; struc 95.4 0.0076 2.6E-07 56.9 3.1 23 106-128 6-28 (175)
287 3vfd_A Spastin; ATPase, microt 95.4 0.075 2.6E-06 57.0 11.3 26 103-128 147-172 (389)
288 2wwf_A Thymidilate kinase, put 95.4 0.0079 2.7E-07 58.3 3.3 27 102-128 8-34 (212)
289 1gtv_A TMK, thymidylate kinase 95.3 0.0041 1.4E-07 60.4 1.2 24 106-129 2-25 (214)
290 2c95_A Adenylate kinase 1; tra 95.3 0.0078 2.7E-07 57.5 3.1 27 102-128 7-33 (196)
291 1uf9_A TT1252 protein; P-loop, 95.3 0.0085 2.9E-07 57.6 3.3 23 105-127 9-31 (203)
292 1ko7_A HPR kinase/phosphatase; 95.3 0.011 3.9E-07 61.8 4.2 38 89-127 130-167 (314)
293 1tev_A UMP-CMP kinase; ploop, 95.2 0.011 3.6E-07 56.3 3.6 24 104-127 3-26 (196)
294 1nn5_A Similar to deoxythymidy 95.2 0.0091 3.1E-07 57.9 3.2 27 102-128 7-33 (215)
295 3k53_A Ferrous iron transport 95.2 0.0077 2.6E-07 61.4 2.8 23 106-128 5-27 (271)
296 1nks_A Adenylate kinase; therm 95.1 0.0096 3.3E-07 56.5 3.0 24 106-129 3-26 (194)
297 2qmh_A HPR kinase/phosphorylas 95.1 0.021 7.1E-07 55.8 5.3 38 89-127 20-57 (205)
298 2ged_A SR-beta, signal recogni 95.0 0.011 3.9E-07 56.0 3.0 24 105-128 49-72 (193)
299 2bwj_A Adenylate kinase 5; pho 94.9 0.0098 3.4E-07 56.9 2.5 27 102-128 10-36 (199)
300 1aky_A Adenylate kinase; ATP:A 94.9 0.014 4.8E-07 57.2 3.6 27 102-128 2-28 (220)
301 1z2a_A RAS-related protein RAB 94.9 0.012 4.1E-07 54.0 2.9 23 106-128 7-29 (168)
302 2z0h_A DTMP kinase, thymidylat 94.9 0.013 4.6E-07 55.8 3.3 23 106-128 2-24 (197)
303 3cmw_A Protein RECA, recombina 94.9 0.25 8.4E-06 62.4 15.3 74 227-300 451-558 (1706)
304 3cmu_A Protein RECA, recombina 94.9 0.06 2E-06 68.7 9.9 76 225-300 449-558 (2050)
305 2nzj_A GTP-binding protein REM 94.8 0.014 4.7E-07 54.1 3.2 23 106-128 6-28 (175)
306 2erx_A GTP-binding protein DI- 94.8 0.014 4.8E-07 53.7 3.2 22 106-127 5-26 (172)
307 3ake_A Cytidylate kinase; CMP 94.8 0.013 4.5E-07 56.4 3.2 23 106-128 4-26 (208)
308 3q72_A GTP-binding protein RAD 94.8 0.011 3.9E-07 54.2 2.4 23 106-128 4-26 (166)
309 1kao_A RAP2A; GTP-binding prot 94.8 0.014 4.7E-07 53.3 3.0 23 106-128 5-27 (167)
310 2dyk_A GTP-binding protein; GT 94.8 0.014 4.8E-07 53.3 3.0 23 106-128 3-25 (161)
311 2vli_A Antibiotic resistance p 94.8 0.011 3.7E-07 55.8 2.3 26 103-128 4-29 (183)
312 1u8z_A RAS-related protein RAL 94.7 0.014 4.8E-07 53.4 2.9 23 106-128 6-28 (168)
313 1zd8_A GTP:AMP phosphotransfer 94.7 0.014 4.9E-07 57.5 3.1 27 102-128 5-31 (227)
314 2ce2_X GTPase HRAS; signaling 94.7 0.013 4.4E-07 53.4 2.5 23 106-128 5-27 (166)
315 3q85_A GTP-binding protein REM 94.7 0.016 5.3E-07 53.5 3.1 22 107-128 5-26 (169)
316 3hu3_A Transitional endoplasmi 94.7 0.037 1.3E-06 61.5 6.7 28 101-128 235-262 (489)
317 1z0j_A RAB-22, RAS-related pro 94.7 0.015 5.2E-07 53.4 3.0 23 106-128 8-30 (170)
318 3tw8_B RAS-related protein RAB 94.7 0.015 5E-07 54.1 2.9 23 106-128 11-33 (181)
319 1z08_A RAS-related protein RAB 94.6 0.016 5.3E-07 53.4 3.0 23 106-128 8-30 (170)
320 1ek0_A Protein (GTP-binding pr 94.6 0.016 5.4E-07 53.2 2.9 23 106-128 5-27 (170)
321 3b1v_A Ferrous iron uptake tra 94.6 0.016 5.4E-07 59.4 3.2 23 106-128 5-27 (272)
322 3fb4_A Adenylate kinase; psych 94.6 0.017 5.9E-07 56.2 3.3 23 106-128 2-24 (216)
323 3iev_A GTP-binding protein ERA 94.6 0.016 5.3E-07 60.5 3.2 23 106-128 12-34 (308)
324 2cdn_A Adenylate kinase; phosp 94.6 0.019 6.5E-07 55.3 3.6 25 104-128 20-44 (201)
325 1wms_A RAB-9, RAB9, RAS-relate 94.6 0.016 5.6E-07 53.8 3.0 23 106-128 9-31 (177)
326 1c1y_A RAS-related protein RAP 94.6 0.016 5.6E-07 53.0 2.9 22 106-127 5-26 (167)
327 1ky3_A GTP-binding protein YPT 94.6 0.017 5.7E-07 53.8 3.0 23 106-128 10-32 (182)
328 2pbr_A DTMP kinase, thymidylat 94.5 0.019 6.3E-07 54.6 3.3 23 106-128 2-24 (195)
329 1fzq_A ADP-ribosylation factor 94.5 0.014 4.8E-07 55.2 2.4 22 106-127 18-39 (181)
330 1g16_A RAS-related protein SEC 94.5 0.015 5.1E-07 53.5 2.5 22 107-128 6-27 (170)
331 1zuh_A Shikimate kinase; alpha 94.5 0.02 6.7E-07 53.5 3.4 24 105-128 8-31 (168)
332 4b4t_I 26S protease regulatory 94.5 0.18 6.1E-06 54.8 11.3 28 102-129 214-241 (437)
333 2lkc_A Translation initiation 94.5 0.022 7.4E-07 53.0 3.7 25 104-128 8-32 (178)
334 1ukz_A Uridylate kinase; trans 94.5 0.02 6.9E-07 55.1 3.5 24 104-127 15-38 (203)
335 1svi_A GTP-binding protein YSX 94.5 0.015 5.3E-07 55.1 2.6 23 106-128 25-47 (195)
336 1e6c_A Shikimate kinase; phosp 94.5 0.017 5.8E-07 53.9 2.8 23 106-128 4-26 (173)
337 2orv_A Thymidine kinase; TP4A 94.5 0.19 6.4E-06 50.1 10.5 53 234-292 89-150 (234)
338 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.022 7.6E-07 57.7 3.7 26 103-128 3-28 (260)
339 3dl0_A Adenylate kinase; phosp 94.4 0.02 6.9E-07 55.8 3.3 23 106-128 2-24 (216)
340 2fn4_A P23, RAS-related protei 94.4 0.017 5.7E-07 53.8 2.6 22 106-127 11-32 (181)
341 2pt5_A Shikimate kinase, SK; a 94.4 0.022 7.6E-07 52.9 3.4 23 106-128 2-24 (168)
342 1zak_A Adenylate kinase; ATP:A 94.4 0.017 5.7E-07 56.8 2.6 26 103-128 4-29 (222)
343 3pqc_A Probable GTP-binding pr 94.4 0.017 5.7E-07 54.5 2.6 23 106-128 25-47 (195)
344 1r2q_A RAS-related protein RAB 94.4 0.019 6.6E-07 52.6 2.9 22 106-127 8-29 (170)
345 4dsu_A GTPase KRAS, isoform 2B 94.4 0.019 6.6E-07 53.8 3.0 23 106-128 6-28 (189)
346 3clv_A RAB5 protein, putative; 94.3 0.02 6.7E-07 54.2 3.0 23 106-128 9-31 (208)
347 2hxs_A RAB-26, RAS-related pro 94.3 0.022 7.5E-07 52.9 3.2 23 106-128 8-30 (178)
348 1qf9_A UMP/CMP kinase, protein 94.3 0.022 7.4E-07 53.9 3.2 25 104-128 6-30 (194)
349 1upt_A ARL1, ADP-ribosylation 94.3 0.02 7E-07 52.7 2.9 22 106-127 9-30 (171)
350 2cxx_A Probable GTP-binding pr 94.3 0.018 6.2E-07 54.2 2.6 22 107-128 4-25 (190)
351 2iyv_A Shikimate kinase, SK; t 94.3 0.019 6.4E-07 54.4 2.6 24 105-128 3-26 (184)
352 2oil_A CATX-8, RAS-related pro 94.3 0.021 7E-07 54.2 2.9 23 106-128 27-49 (193)
353 3bc1_A RAS-related protein RAB 94.3 0.021 7E-07 53.7 2.9 23 106-128 13-35 (195)
354 1r8s_A ADP-ribosylation factor 94.2 0.022 7.5E-07 52.2 2.9 21 107-127 3-23 (164)
355 3tlx_A Adenylate kinase 2; str 94.2 0.027 9.1E-07 56.5 3.7 26 103-128 28-53 (243)
356 1moz_A ARL1, ADP-ribosylation 94.1 0.014 4.8E-07 54.6 1.5 21 106-126 20-40 (183)
357 2g6b_A RAS-related protein RAB 94.1 0.023 7.9E-07 52.9 2.9 23 106-128 12-34 (180)
358 2a9k_A RAS-related protein RAL 94.1 0.023 7.9E-07 53.1 2.9 23 106-128 20-42 (187)
359 1z0f_A RAB14, member RAS oncog 94.1 0.024 8.1E-07 52.6 2.9 23 106-128 17-39 (179)
360 3t1o_A Gliding protein MGLA; G 94.1 0.026 8.8E-07 53.3 3.2 24 106-129 16-39 (198)
361 1wf3_A GTP-binding protein; GT 94.1 0.025 8.5E-07 58.8 3.4 25 103-128 7-31 (301)
362 2y8e_A RAB-protein 6, GH09086P 94.1 0.021 7.2E-07 52.9 2.5 22 106-127 16-37 (179)
363 2efe_B Small GTP-binding prote 94.0 0.025 8.6E-07 52.7 3.0 23 106-128 14-36 (181)
364 3con_A GTPase NRAS; structural 94.0 0.024 8.4E-07 53.5 2.9 23 106-128 23-45 (190)
365 2grj_A Dephospho-COA kinase; T 94.0 0.028 9.7E-07 54.5 3.3 24 104-127 12-35 (192)
366 1jbk_A CLPB protein; beta barr 94.0 0.032 1.1E-06 52.1 3.6 28 102-129 41-68 (195)
367 1uj2_A Uridine-cytidine kinase 94.0 0.028 9.5E-07 56.5 3.3 24 105-128 23-46 (252)
368 3t5d_A Septin-7; GTP-binding p 93.9 0.022 7.4E-07 58.1 2.5 22 107-128 11-32 (274)
369 1nrj_B SR-beta, signal recogni 93.9 0.025 8.7E-07 54.8 2.9 23 106-128 14-36 (218)
370 4ag6_A VIRB4 ATPase, type IV s 93.9 0.024 8.2E-07 60.9 2.9 45 235-279 262-309 (392)
371 2bov_A RAla, RAS-related prote 93.9 0.026 9E-07 53.8 2.9 23 106-128 16-38 (206)
372 3dm5_A SRP54, signal recogniti 93.9 0.47 1.6E-05 51.8 13.2 27 103-129 99-125 (443)
373 1vg8_A RAS-related protein RAB 93.9 0.027 9.2E-07 53.9 3.0 23 106-128 10-32 (207)
374 3iby_A Ferrous iron transport 93.9 0.025 8.4E-07 57.4 2.8 23 106-128 3-25 (256)
375 1ksh_A ARF-like protein 2; sma 93.9 0.028 9.5E-07 52.9 3.0 25 104-128 18-42 (186)
376 3ihw_A Centg3; RAS, centaurin, 93.8 0.028 9.6E-07 53.3 3.0 22 106-127 22-43 (184)
377 2bme_A RAB4A, RAS-related prot 93.8 0.025 8.5E-07 53.1 2.5 23 106-128 12-34 (186)
378 2gf9_A RAS-related protein RAB 93.8 0.028 9.6E-07 53.2 2.9 23 106-128 24-46 (189)
379 3cbq_A GTP-binding protein REM 93.8 0.023 7.9E-07 54.5 2.3 22 106-127 25-46 (195)
380 2xb4_A Adenylate kinase; ATP-b 93.8 0.032 1.1E-06 55.0 3.4 23 106-128 2-24 (223)
381 2dby_A GTP-binding protein; GD 93.8 0.026 9E-07 60.4 2.9 21 107-127 4-24 (368)
382 3tkl_A RAS-related protein RAB 93.8 0.029 9.8E-07 53.1 2.9 23 106-128 18-40 (196)
383 3u61_B DNA polymerase accessor 93.8 0.28 9.5E-06 50.7 10.7 42 235-278 105-147 (324)
384 3kkq_A RAS-related protein M-R 93.7 0.03 1E-06 52.4 2.9 23 106-128 20-42 (183)
385 2gf0_A GTP-binding protein DI- 93.7 0.027 9.2E-07 53.5 2.6 22 106-127 10-31 (199)
386 2xtp_A GTPase IMAP family memb 93.7 0.028 9.5E-07 56.5 2.8 23 106-128 24-46 (260)
387 1a7j_A Phosphoribulokinase; tr 93.7 0.018 6.1E-07 59.6 1.4 26 103-128 4-29 (290)
388 1m7b_A RND3/RHOE small GTP-bin 93.7 0.027 9.4E-07 53.0 2.5 23 106-128 9-31 (184)
389 2fg5_A RAB-22B, RAS-related pr 93.7 0.028 9.5E-07 53.5 2.6 23 106-128 25-47 (192)
390 1mh1_A RAC1; GTP-binding, GTPa 93.7 0.031 1.1E-06 52.2 2.9 22 106-127 7-28 (186)
391 1zbd_A Rabphilin-3A; G protein 93.6 0.033 1.1E-06 53.2 3.1 23 106-128 10-32 (203)
392 3v9p_A DTMP kinase, thymidylat 93.6 0.03 1E-06 55.9 2.8 30 100-129 21-50 (227)
393 3be4_A Adenylate kinase; malar 93.6 0.032 1.1E-06 54.6 3.0 25 104-128 5-29 (217)
394 1z06_A RAS-related protein RAB 93.6 0.033 1.1E-06 52.7 3.0 22 106-127 22-43 (189)
395 2il1_A RAB12; G-protein, GDP, 93.6 0.031 1.1E-06 53.2 2.8 23 106-128 28-50 (192)
396 3a1s_A Iron(II) transport prot 93.6 0.034 1.2E-06 56.4 3.2 23 106-128 7-29 (258)
397 1njg_A DNA polymerase III subu 93.6 0.0075 2.6E-07 58.7 -1.7 43 234-278 125-167 (250)
398 4dhe_A Probable GTP-binding pr 93.5 0.019 6.6E-07 55.8 1.2 23 106-128 31-53 (223)
399 2f6r_A COA synthase, bifunctio 93.5 0.032 1.1E-06 57.2 3.0 22 105-126 76-97 (281)
400 4edh_A DTMP kinase, thymidylat 93.5 0.042 1.4E-06 54.1 3.7 28 102-129 4-31 (213)
401 2wsm_A Hydrogenase expression/ 93.5 0.032 1.1E-06 54.2 2.8 24 105-128 31-54 (221)
402 2cjw_A GTP-binding protein GEM 93.5 0.034 1.2E-06 53.2 2.9 22 106-127 8-29 (192)
403 2a5j_A RAS-related protein RAB 93.5 0.035 1.2E-06 52.6 2.9 23 106-128 23-45 (191)
404 3bwd_D RAC-like GTP-binding pr 93.5 0.036 1.2E-06 51.7 2.9 23 106-128 10-32 (182)
405 3oes_A GTPase rhebl1; small GT 93.5 0.031 1.1E-06 53.6 2.5 23 106-128 26-48 (201)
406 3i8s_A Ferrous iron transport 93.4 0.033 1.1E-06 56.9 2.8 23 106-128 5-27 (274)
407 1jwy_B Dynamin A GTPase domain 93.4 0.033 1.1E-06 57.5 2.9 23 106-128 26-48 (315)
408 3a8t_A Adenylate isopentenyltr 93.4 0.048 1.6E-06 57.6 4.1 26 103-128 39-64 (339)
409 1zd9_A ADP-ribosylation factor 93.4 0.036 1.2E-06 52.5 2.9 23 106-128 24-46 (188)
410 3umf_A Adenylate kinase; rossm 93.4 0.044 1.5E-06 54.3 3.6 27 102-128 27-53 (217)
411 3t5g_A GTP-binding protein RHE 93.4 0.033 1.1E-06 52.0 2.5 22 106-127 8-29 (181)
412 3tqf_A HPR(Ser) kinase; transf 93.4 0.07 2.4E-06 50.9 4.8 35 91-126 4-38 (181)
413 1x3s_A RAS-related protein RAB 93.4 0.037 1.3E-06 52.2 2.9 23 106-128 17-39 (195)
414 3dz8_A RAS-related protein RAB 93.4 0.033 1.1E-06 52.9 2.5 23 106-128 25-47 (191)
415 2atv_A RERG, RAS-like estrogen 93.4 0.037 1.3E-06 52.7 3.0 23 106-128 30-52 (196)
416 2qu8_A Putative nucleolar GTP- 93.4 0.037 1.3E-06 54.4 3.0 22 106-127 31-52 (228)
417 1jal_A YCHF protein; nucleotid 93.4 0.039 1.3E-06 58.9 3.3 23 105-127 3-25 (363)
418 1zj6_A ADP-ribosylation factor 93.4 0.036 1.2E-06 52.3 2.8 22 106-127 18-39 (187)
419 2o52_A RAS-related protein RAB 93.4 0.035 1.2E-06 53.3 2.8 22 106-127 27-48 (200)
420 2h57_A ADP-ribosylation factor 93.4 0.028 9.5E-07 53.2 2.0 23 106-128 23-45 (190)
421 4bas_A ADP-ribosylation factor 93.4 0.037 1.3E-06 52.5 2.9 23 106-128 19-41 (199)
422 1ltq_A Polynucleotide kinase; 93.4 0.042 1.4E-06 56.4 3.5 22 105-126 3-24 (301)
423 2bcg_Y Protein YP2, GTP-bindin 93.3 0.033 1.1E-06 53.5 2.5 23 106-128 10-32 (206)
424 1e4v_A Adenylate kinase; trans 93.3 0.037 1.3E-06 53.9 3.0 23 106-128 2-24 (214)
425 3reg_A RHO-like small GTPase; 93.3 0.038 1.3E-06 52.5 2.9 23 106-128 25-47 (194)
426 3cph_A RAS-related protein SEC 93.3 0.038 1.3E-06 53.1 2.9 23 106-128 22-44 (213)
427 2p5s_A RAS and EF-hand domain 93.3 0.038 1.3E-06 52.8 2.9 23 106-128 30-52 (199)
428 1ak2_A Adenylate kinase isoenz 93.3 0.046 1.6E-06 54.1 3.6 26 103-128 15-40 (233)
429 2f7s_A C25KG, RAS-related prot 93.3 0.042 1.4E-06 53.2 3.2 23 106-128 27-49 (217)
430 2p65_A Hypothetical protein PF 93.2 0.04 1.4E-06 51.4 2.9 28 102-129 41-68 (187)
431 2h17_A ADP-ribosylation factor 93.2 0.033 1.1E-06 52.3 2.3 22 106-127 23-44 (181)
432 2ew1_A RAS-related protein RAB 93.2 0.036 1.2E-06 53.6 2.5 23 106-128 28-50 (201)
433 2iwr_A Centaurin gamma 1; ANK 93.2 0.033 1.1E-06 51.8 2.2 22 106-127 9-30 (178)
434 3zvl_A Bifunctional polynucleo 93.1 0.046 1.6E-06 59.4 3.5 27 102-128 256-282 (416)
435 2q3h_A RAS homolog gene family 93.1 0.047 1.6E-06 52.1 3.1 23 106-128 22-44 (201)
436 2fv8_A H6, RHO-related GTP-bin 93.1 0.039 1.3E-06 53.2 2.6 23 106-128 27-49 (207)
437 3lv8_A DTMP kinase, thymidylat 93.0 0.047 1.6E-06 54.7 3.2 27 103-129 26-52 (236)
438 3c5c_A RAS-like protein 12; GD 93.0 0.046 1.6E-06 51.8 3.0 23 106-128 23-45 (187)
439 3llu_A RAS-related GTP-binding 93.0 0.046 1.6E-06 52.2 2.9 24 106-129 22-45 (196)
440 1sky_E F1-ATPase, F1-ATP synth 93.0 0.054 1.9E-06 59.6 3.8 34 94-128 142-175 (473)
441 2aka_B Dynamin-1; fusion prote 92.9 0.04 1.4E-06 56.3 2.6 23 106-128 28-50 (299)
442 2fh5_B SR-beta, signal recogni 92.9 0.047 1.6E-06 52.7 2.9 23 106-128 9-31 (214)
443 1gwn_A RHO-related GTP-binding 92.9 0.042 1.4E-06 53.2 2.5 23 106-128 30-52 (205)
444 2fu5_C RAS-related protein RAB 92.9 0.032 1.1E-06 52.2 1.6 22 106-127 10-31 (183)
445 3d3q_A TRNA delta(2)-isopenten 92.9 0.05 1.7E-06 57.5 3.3 24 105-128 8-31 (340)
446 3exa_A TRNA delta(2)-isopenten 92.9 0.059 2E-06 56.3 3.7 25 104-128 3-27 (322)
447 2j1l_A RHO-related GTP-binding 92.9 0.046 1.6E-06 53.1 2.8 22 106-127 36-57 (214)
448 2h92_A Cytidylate kinase; ross 92.8 0.041 1.4E-06 53.6 2.4 25 104-128 3-27 (219)
449 2zts_A Putative uncharacterize 92.8 0.068 2.3E-06 52.7 4.0 60 233-292 133-206 (251)
450 2b6h_A ADP-ribosylation factor 92.8 0.044 1.5E-06 52.3 2.4 22 106-127 31-52 (192)
451 3tmk_A Thymidylate kinase; pho 92.7 0.056 1.9E-06 53.4 3.2 28 102-129 3-30 (216)
452 4tmk_A Protein (thymidylate ki 92.7 0.057 1.9E-06 53.2 3.2 27 103-129 2-28 (213)
453 2gco_A H9, RHO-related GTP-bin 92.7 0.046 1.6E-06 52.4 2.5 23 106-128 27-49 (201)
454 1qvr_A CLPB protein; coiled co 92.7 0.13 4.5E-06 61.1 7.0 25 105-129 589-613 (854)
455 3ld9_A DTMP kinase, thymidylat 92.7 0.067 2.3E-06 53.1 3.7 28 102-129 19-46 (223)
456 1p5z_B DCK, deoxycytidine kina 92.7 0.044 1.5E-06 55.4 2.4 28 102-129 22-49 (263)
457 3cmu_A Protein RECA, recombina 92.7 0.43 1.5E-05 61.1 11.8 27 100-126 1423-1449(2050)
458 2ocp_A DGK, deoxyguanosine kin 92.7 0.06 2E-06 53.5 3.4 27 103-129 1-27 (241)
459 3def_A T7I23.11 protein; chlor 92.7 0.05 1.7E-06 55.0 2.8 23 106-128 38-60 (262)
460 4djt_A GTP-binding nuclear pro 92.5 0.031 1E-06 54.2 1.0 22 106-127 13-34 (218)
461 1h65_A Chloroplast outer envel 92.5 0.053 1.8E-06 55.0 2.8 23 106-128 41-63 (270)
462 2g3y_A GTP-binding protein GEM 92.5 0.063 2.2E-06 52.6 3.2 22 106-127 39-60 (211)
463 2atx_A Small GTP binding prote 92.5 0.053 1.8E-06 51.3 2.6 22 106-127 20-41 (194)
464 3sr0_A Adenylate kinase; phosp 92.4 0.068 2.3E-06 52.3 3.3 23 106-128 2-24 (206)
465 1sxj_D Activator 1 41 kDa subu 92.4 0.019 6.4E-07 60.1 -0.8 42 235-278 133-174 (353)
466 3crm_A TRNA delta(2)-isopenten 92.4 0.067 2.3E-06 56.2 3.4 24 105-128 6-29 (323)
467 3cpj_B GTP-binding protein YPT 92.3 0.065 2.2E-06 52.3 3.0 23 106-128 15-37 (223)
468 2hf9_A Probable hydrogenase ni 92.2 0.063 2.2E-06 52.3 2.8 24 105-128 39-62 (226)
469 2hup_A RAS-related protein RAB 92.1 0.062 2.1E-06 51.6 2.6 23 106-128 31-53 (201)
470 2x77_A ADP-ribosylation factor 92.1 0.044 1.5E-06 51.7 1.5 21 106-126 24-44 (189)
471 3cnl_A YLQF, putative uncharac 92.1 0.065 2.2E-06 54.5 2.8 25 105-129 100-124 (262)
472 2yc2_C IFT27, small RAB-relate 92.0 0.032 1.1E-06 53.2 0.4 22 106-127 22-43 (208)
473 3foz_A TRNA delta(2)-isopenten 91.9 0.093 3.2E-06 54.7 3.7 25 104-128 10-34 (316)
474 4dcu_A GTP-binding protein ENG 91.9 0.067 2.3E-06 58.8 2.8 51 222-276 89-140 (456)
475 4gzl_A RAS-related C3 botulinu 91.8 0.071 2.4E-06 51.3 2.5 22 106-127 32-53 (204)
476 3q3j_B RHO-related GTP-binding 91.7 0.08 2.7E-06 51.5 2.9 22 106-127 29-50 (214)
477 3pxi_A Negative regulator of g 91.7 0.37 1.3E-05 56.3 9.1 23 106-128 523-545 (758)
478 2orw_A Thymidine kinase; TMTK, 91.7 0.091 3.1E-06 50.3 3.2 53 235-292 76-137 (184)
479 2j0v_A RAC-like GTP-binding pr 91.6 0.075 2.5E-06 51.2 2.5 23 106-128 11-33 (212)
480 3euj_A Chromosome partition pr 91.4 0.24 8E-06 54.9 6.5 71 215-292 377-464 (483)
481 3eph_A TRNA isopentenyltransfe 91.3 0.099 3.4E-06 56.5 3.3 25 104-128 2-26 (409)
482 3p32_A Probable GTPase RV1496/ 91.3 0.14 5E-06 54.1 4.6 27 103-129 78-104 (355)
483 1ypw_A Transitional endoplasmi 91.2 0.03 1E-06 66.2 -0.9 33 97-129 504-536 (806)
484 3n70_A Transport activator; si 91.2 0.098 3.4E-06 47.7 2.8 43 235-279 76-118 (145)
485 2vhj_A Ntpase P4, P4; non- hyd 91.1 0.13 4.3E-06 54.0 3.8 28 99-126 118-145 (331)
486 3syl_A Protein CBBX; photosynt 91.0 0.11 3.8E-06 53.2 3.2 28 102-129 65-92 (309)
487 2r62_A Cell division protease 90.7 0.057 1.9E-06 54.3 0.7 27 100-128 42-68 (268)
488 3gmt_A Adenylate kinase; ssgci 90.7 0.12 4.2E-06 51.4 3.1 23 106-128 10-32 (230)
489 1d2n_A N-ethylmaleimide-sensit 90.5 0.14 4.7E-06 51.7 3.4 27 102-128 62-88 (272)
490 1puj_A YLQF, conserved hypothe 90.5 0.14 4.7E-06 52.7 3.4 24 105-128 121-144 (282)
491 2x2e_A Dynamin-1; nitration, h 90.5 0.092 3.2E-06 55.6 2.1 23 106-128 33-55 (353)
492 3r7w_A Gtpase1, GTP-binding pr 90.4 0.15 5E-06 52.9 3.5 24 104-127 3-26 (307)
493 1wxq_A GTP-binding protein; st 90.3 0.12 4.1E-06 55.8 2.8 41 192-241 181-221 (397)
494 3th5_A RAS-related C3 botulinu 89.7 0.053 1.8E-06 51.9 0.0 21 106-126 32-52 (204)
495 4hlc_A DTMP kinase, thymidylat 90.2 0.17 5.8E-06 49.4 3.6 26 104-129 2-27 (205)
496 2hjg_A GTP-binding protein ENG 90.2 0.12 4.3E-06 56.2 2.9 23 106-128 5-27 (436)
497 1knx_A Probable HPR(Ser) kinas 90.1 0.23 7.8E-06 51.8 4.7 37 89-126 133-169 (312)
498 3l0i_B RAS-related protein RAB 90.1 0.036 1.2E-06 53.0 -1.4 23 106-128 35-57 (199)
499 3gj0_A GTP-binding nuclear pro 90.1 0.098 3.3E-06 50.8 1.8 22 106-127 17-39 (221)
500 3uk6_A RUVB-like 2; hexameric 89.9 0.15 5.1E-06 53.6 3.2 28 102-129 68-95 (368)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.8e-48 Score=415.35 Aligned_cols=204 Identities=25% Similarity=0.377 Sum_probs=183.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
..+|+||||+|++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++++|||||++.++
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~ 117 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCC
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccC
Confidence 5699999999999999999999999999999999999986 48999999987532 2367899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.++...+ ..++++.+++++++|+.+||.+.+++ ++.+|||||||||+|||||+.+|++|||||
T Consensus 118 ~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGqkQRVaIArAL~~~P~lLLlDE 189 (366)
T 3tui_C 118 SSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDQ 189 (366)
T ss_dssp TTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHHHHHHHHHHHTTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999986653 24567778899999999999886654 456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+.++..++++|+++++ .|.|||++||++. .+.++||||++|++|++++.|+++++.
T Consensus 190 PTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 190 ATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999975 4999999999965 588999999999999999999998874
No 2
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.9e-47 Score=395.94 Aligned_cols=205 Identities=28% Similarity=0.465 Sum_probs=180.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQDDILY 163 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~l~ 163 (679)
++++|+||||++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...++.+|||+|++.++
T Consensus 36 ~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~ 112 (263)
T 2olj_A 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112 (263)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCC
T ss_pred CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCC
Confidence 45799999999999999999999999999999999999986 4899999997652 12356799999999999
Q ss_pred CCCCHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 164 PHLTVRETLVFCS-LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 164 ~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+.+||+||+.++. ... ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||||+.+|++||||
T Consensus 113 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqkQRv~lAraL~~~p~lllLD 184 (263)
T 2olj_A 113 PHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSGGQAQRVAIARALAMEPKIMLFD 184 (263)
T ss_dssp TTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 9999999999864 222 234555567889999999998766554 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 185 EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999878999999999965 578899999999999999999998764
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6.8e-48 Score=416.62 Aligned_cols=213 Identities=29% Similarity=0.459 Sum_probs=189.3
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~ 160 (679)
+++++|+++.+|+||||++++||+++|+||||||||||||+|+|+++| .+|+|.++|++... ..++.+|||+|++
T Consensus 8 ~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~ 84 (381)
T 3rlf_A 8 NVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPPAERGVGMVFQSY 84 (381)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCGGGSCEEEECTTC
T ss_pred eEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEECCCCCHHHCCEEEEecCC
Confidence 334455667899999999999999999999999999999999999986 48999999987542 3357899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..+ +++++|||||||||+|||||+.+|++||
T Consensus 85 ~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~-----r~p~~LSGGqrQRVaiArAL~~~P~lLL 156 (381)
T 3rlf_A 85 ALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLD-----RKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (381)
T ss_dssp CCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTT-----CCGGGSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhHCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999987654 3467777889999999999987655 4556899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||||||+..+.++.+.|+++.++ |.|+|++|||+. ++..+||||++|++|+++..|+++++.+
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999765 999999999965 6899999999999999999999998754
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4e-48 Score=415.74 Aligned_cols=212 Identities=29% Similarity=0.460 Sum_probs=185.3
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc----c--ccccCcEEEEe
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP----T--KHISKRTGFVT 157 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~----~--~~~~~~i~yv~ 157 (679)
++++|+++.+|+|||++|++||+++|+||||||||||||+|+|+.+| .+|+|.++|++. . ...++.+|||+
T Consensus 10 ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~i~~~~~~~~~~~r~ig~vf 86 (359)
T 3fvq_A 10 LSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP---DSGEISLSGKTIFSKNTNLPVRERRLGYLV 86 (359)
T ss_dssp EEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEESSSCBCCGGGSCCEEEC
T ss_pred EEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEECcccccccchhhCCEEEEe
Confidence 34445567899999999999999999999999999999999999987 489999999765 1 13457899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++.+|||||||||+|||||+.+|+
T Consensus 87 Q~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 87 QEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGR-----YPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp TTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999975432 23456667889999999999886654 456799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||||||||+..+.++++.|+++. +.|+|||++|||.. ++..+||||++|++|+++..|+++++.+
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999888875 46999999999965 6889999999999999999999998743
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.4e-47 Score=389.24 Aligned_cols=206 Identities=29% Similarity=0.399 Sum_probs=177.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c----ccCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H----ISKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~----~~~~i~yv~Q~~~l 162 (679)
+.+|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... . .++.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 5699999999999999999999999999999999999986 48999999976432 1 13469999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.++...+.....+.++..+++.++++.+||.+.. .++.+.+|||||||||+|||||+.+|++||||
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----~~~~~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----ANHKPNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999876543222345667778899999999998642 12445689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+|||+.++..+++.|++++++ |+|||++||++. +.++||++++|++|+++..+++++.
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 999999999999999999999765 999999999974 4589999999999999999987764
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-47 Score=397.70 Aligned_cols=207 Identities=27% Similarity=0.426 Sum_probs=181.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----------------cccc
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----------------KHIS 150 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----------------~~~~ 150 (679)
|+++++|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...+
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1b0u_A 16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLR 92 (262)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCEEECTTSSEEESCHHHHHHHH
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEccccccccccccccChhhHHHHh
Confidence 4446799999999999999999999999999999999999986 4899999997653 1235
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHH
Q 005754 151 KRTGFVTQDDILYPHLTVRETLVFCS-LLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSI 228 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~I 228 (679)
+.+|||+|++.+++.+||+||+.++. ..+ ..+..+.+++++++++.+||.+. .++. +.+|||||||||+|
T Consensus 93 ~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 93 TRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSI 164 (262)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSC-----GGGSCHHHHHHHHH
T ss_pred cceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCC-----cccCCHHHHHHHHH
Confidence 67999999999999999999999854 222 23455556788999999999876 5544 55799999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 229 AHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 229 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++.
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 165 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999888999999999965 578899999999999999999988764
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1e-47 Score=400.31 Aligned_cols=205 Identities=30% Similarity=0.446 Sum_probs=180.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecCC-CCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQDD-ILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~-~l~ 163 (679)
+.+|+|||++|++||+++|+||||||||||+|+|+|+++| .+|+|.++|++.. ...++.+|||||++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 4599999999999999999999999999999999999986 4899999998752 13467899999986 234
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
..+||+||+.|+.... ..+.++.+++++++++.+||.+..+.. +.+|||||||||+|||||+.+|++|||||
T Consensus 98 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqkQRv~iAraL~~~P~lLlLDE 169 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKP-----THCLSFGQKKRVAIAGVLVMEPKVLILDE 169 (275)
T ss_dssp CSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4789999999976542 345677778899999999998866654 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||+|||+.++..+++.|++++ ++|+|||++||++. .+.++|||+++|++|++++.|+++++.+
T Consensus 170 Pts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred ccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999997 56999999999976 4778999999999999999999988754
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.2e-47 Score=408.79 Aligned_cols=213 Identities=27% Similarity=0.452 Sum_probs=187.6
Q ss_pred CCccccc-cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEec
Q 005754 82 QGSTAKI-QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQ 158 (679)
Q Consensus 82 ~~~~~~~-~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q 158 (679)
++++++| +++++|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.++|++... ..++.+|||+|
T Consensus 18 ~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q 94 (355)
T 1z47_A 18 VGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKRVTDLPPQKRNVGLVFQ 94 (355)
T ss_dssp EEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCGGGSSEEEECG
T ss_pred EEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCEECCcCChhhCcEEEEec
Confidence 3444455 567799999999999999999999999999999999999986 48999999976532 34678999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|++
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANR-----FPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999976543 23556677889999999999886654 4567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||+|||+.++.++.+.|+++.++ |.|+|++|||+. ++..+||++++|++|+++..|+++++.
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999765 999999999964 688999999999999999999998874
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-47 Score=393.60 Aligned_cols=209 Identities=27% Similarity=0.408 Sum_probs=182.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILY 163 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~ 163 (679)
+|+++++|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.+|||+|++.++
T Consensus 24 ~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~ 100 (256)
T 1vpl_A 24 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY 100 (256)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTCHHHHHTTEEEECTTCCCC
T ss_pred EECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCccHHHHhhcEEEEcCCCCCC
Confidence 34456799999999999999999999999999999999999986 48999999976532 3467899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.+....+ ..+.++.+++++++++.+||.+..++. +..|||||||||+|||||+.+|++|||||
T Consensus 101 ~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 101 RNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp TTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 123445557789999999998876654 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||+|||+.++..+++.|++++++|+|||++||++. ++..+||++++|++|++++.|+++++.+
T Consensus 173 Pts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 173 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999878999999999965 5778899999999999999999888754
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.1e-47 Score=384.88 Aligned_cols=202 Identities=31% Similarity=0.424 Sum_probs=176.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------ccc-CcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HIS-KRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~-~~i~yv~Q~ 159 (679)
|+++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..+ +.++||+|+
T Consensus 14 y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 90 (224)
T 2pcj_A 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90 (224)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTEECCSSCHHHHHHHHHHHEEEECSS
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCCCCHHHHHHHHhCcEEEEecC
Confidence 4446799999999999999999999999999999999999986 48999999976532 122 579999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..+.. +++|||||||||+|||||+.+|++|
T Consensus 91 ~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~laral~~~p~ll 162 (224)
T 2pcj_A 91 HYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRK-----PYELSGGEQQRVAIARALANEPILL 162 (224)
T ss_dssp CCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999876543 234455567889999999998876654 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
||||||+|||+.++..+++.|++++++|+|||++|||+. .+ ++||++++|++|++++.|+.
T Consensus 163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 999999999999999999999999877999999999964 35 89999999999999998863
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.5e-47 Score=407.22 Aligned_cols=212 Identities=33% Similarity=0.490 Sum_probs=186.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
++++|+++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|++... ..++.+|||+|+..
T Consensus 9 l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 85 (362)
T 2it1_A 9 IVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVTELPPKDRNVGLVFQNWA 85 (362)
T ss_dssp EEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGTTEEEECTTCC
T ss_pred EEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcCCHhHCcEEEEecCcc
Confidence 34445567899999999999999999999999999999999999986 48999999976532 23578999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|++|||
T Consensus 86 l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 86 LYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNR-----YPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp CCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999986543 23456667889999999999886654 4567999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||||+..+..+.+.|+++.++ |.|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999765 999999999964 6889999999999999999999988743
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.2e-47 Score=394.75 Aligned_cols=208 Identities=26% Similarity=0.374 Sum_probs=179.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDDIL 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~~l 162 (679)
|+++++|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.+|||+|++.+
T Consensus 17 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 93 (257)
T 1g6h_A 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQP 93 (257)
T ss_dssp ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGG
T ss_pred ECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCHHHHHhCCEEEEccCCcc
Confidence 3456799999999999999999999999999999999999986 48999999976532 234579999999999
Q ss_pred CCCCCHHHHHHHHhhh-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 163 YPHLTVRETLVFCSLL-RLPR---------TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
++.+||+||+.++... +... .....+.+++++++++.+||.+..++. ++.|||||||||+|||||
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkQrv~iAraL 168 (257)
T 1g6h_A 94 LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----AGELSGGQMKLVEIGRAL 168 (257)
T ss_dssp GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----chhCCHHHHHHHHHHHHH
Confidence 9999999999986432 1010 012334556789999999998766654 457999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|++++
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999888999999999976 4778999999999999999999887
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.9e-47 Score=407.63 Aligned_cols=211 Identities=28% Similarity=0.441 Sum_probs=184.4
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l 162 (679)
+++|+++++|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.+|||+|+..+
T Consensus 10 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l 86 (359)
T 2yyz_A 10 KKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVLVNDIPPKYREVGMVFQNYAL 86 (359)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGTTEEEECSSCCC
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCEECCCCChhhCcEEEEecCccc
Confidence 3445557799999999999999999999999999999999999986 48999999976532 235789999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+|++||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|++||||
T Consensus 87 ~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 87 YPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDR-----KPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp CTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999875432 23344556789999999999886654 45679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||||+..+..+.+.|+++.++ |.|+|++|||.. ++..+|||+++|++|+++..|+++++.+
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999764 999999999964 5889999999999999999999998753
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.4e-46 Score=407.03 Aligned_cols=210 Identities=30% Similarity=0.452 Sum_probs=185.1
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEe
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVT 157 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~ 157 (679)
++|+++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.+|||+
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~ 87 (372)
T 1g29_1 11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVF 87 (372)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEEEGGGTEECCGGGSSEEEEC
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEEECCEECccccccccCCHhHCCEEEEe
Confidence 344456799999999999999999999999999999999999986 48999999976422 2357899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|+
T Consensus 88 Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 88 QSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp SCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred CCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986543 23456667889999999999886654 456799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||||||||+..+..+.+.|+++.++ |.|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999765 999999999964 6889999999999999999999988753
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.9e-47 Score=407.04 Aligned_cols=209 Identities=30% Similarity=0.466 Sum_probs=184.3
Q ss_pred ccccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEE
Q 005754 86 AKIQERT--ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFV 156 (679)
Q Consensus 86 ~~~~~~~--iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv 156 (679)
++|++++ +|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.+|||
T Consensus 11 ~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v 87 (353)
T 1oxx_K 11 KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASNGKLIVPPEDRKIGMV 87 (353)
T ss_dssp EEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEEEETTEESSCGGGSCEEEE
T ss_pred EEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECcccccccCChhhCCEEEE
Confidence 3444566 99999999999999999999999999999999999986 48999999976422 246789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|
T Consensus 88 ~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~-----~~~~LSGGq~QRvalAraL~~~P 159 (353)
T 1oxx_K 88 FQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGAQQQRVALARALVKDP 159 (353)
T ss_dssp ETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCC
T ss_pred eCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999875432 23566667889999999999886654 45679999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
++|||||||+|||+..+.++.+.|+++.++ |+|+|++|||+. ++..+|||+++|++|+++..|+++++.
T Consensus 160 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999764 999999999965 688999999999999999999998874
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-47 Score=387.72 Aligned_cols=206 Identities=25% Similarity=0.382 Sum_probs=176.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEecCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVTQDDIL 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~Q~~~l 162 (679)
|+++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... . .++.+|||+|++.+
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 92 (240)
T 1ji0_A 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRI 92 (240)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCC
T ss_pred ECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCCHHHHHhCCEEEEecCCcc
Confidence 3446799999999999999999999999999999999999986 48999999976532 1 24569999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++.+||+||+.++.... ...++.+++++++++.++ |.+..++ .++.|||||||||+|||||+.+|++|||
T Consensus 93 ~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 93 FPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp CTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999864211 122344567788999994 8765554 4557999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999878999999999964 578899999999999999999987763
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.4e-47 Score=392.40 Aligned_cols=204 Identities=25% Similarity=0.391 Sum_probs=178.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYP 164 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~ 164 (679)
+++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++... ..++.++|++|++.+++
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAF 98 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCC
Confidence 3567999999999999999999999999999999999999874 7999999987532 34567999999999888
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh------CCCe
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI------NPSL 238 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~------~P~l 238 (679)
.+||+||+.++.... ...+.+++++++++.+||.+..++. +++|||||||||+|||||+. +|++
T Consensus 99 ~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 99 PFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRD-----YRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp CCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred CCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 899999999875432 1223456788999999998876654 45799999999999999999 9999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||+|||+.++..+++.|++++++ |+|||++|||+. ++.++|||+++|++|++++.|+++++.
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999999765 689999999965 578899999999999999999998863
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.2e-46 Score=406.91 Aligned_cols=209 Identities=27% Similarity=0.439 Sum_probs=177.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYP 164 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~ 164 (679)
+|+++++|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.++|++... ..++.+|||+|+..+||
T Consensus 20 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 96 (372)
T 1v43_A 20 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP 96 (372)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGGTEEEEEC------
T ss_pred EECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 34456799999999999999999999999999999999999986 48999999976532 23578999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
++||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|++||||||
T Consensus 97 ~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 97 HMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999875332 23566667889999999999886654 4567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+..+..+.+.|+++.++ |.|+|++|||.. ++..+|||+++|++|+++..|+++++.+
T Consensus 169 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 169 LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999765 999999999965 5889999999999999999999998753
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.7e-46 Score=400.13 Aligned_cols=208 Identities=27% Similarity=0.435 Sum_probs=181.9
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~ 160 (679)
+++++|+++ +|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.+|||+|+.
T Consensus 6 ~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 81 (348)
T 3d31_A 6 SLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKHDIAFVYQNY 81 (348)
T ss_dssp EEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred EEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEECCEECCCCchhhCcEEEEecCc
Confidence 344556667 99999999999999999999999999999999999986 48999999976532 2356899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.++|.+||+||+.|+...+. .++. ++++++++.+||++..++. +++|||||||||+|||||+.+|++||
T Consensus 82 ~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~-----~~~LSgGq~QRvalAraL~~~P~lLL 150 (348)
T 3d31_A 82 SLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVALARALVTNPKILL 150 (348)
T ss_dssp CCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred ccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999765431 1111 6788999999999876644 55799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++..+.+.|+++.+ .|+|+|++|||+. ++..+|||+++|++|+++..|+++++.
T Consensus 151 LDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 151 LDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999975 5999999999964 588999999999999999999998873
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.5e-46 Score=378.81 Aligned_cols=206 Identities=27% Similarity=0.412 Sum_probs=177.2
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
++++|++ +|+|+|+++++ |+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.+|||+|++.
T Consensus 7 l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (240)
T 2onk_A 7 AEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPERRGIGFVPQDYA 80 (240)
T ss_dssp EEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTTTSCCBCCCSSCC
T ss_pred EEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCchhhCcEEEEcCCCc
Confidence 3344543 59999999999 99999999999999999999999986 48999999976532 34567999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++.+||+||+.+....+ .....+++++++++.+||.+..+.. ++.|||||||||+|||||+.+|++|||
T Consensus 81 l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~~~p~lllL 150 (240)
T 2onk_A 81 LFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp CCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred cCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999998864321 1222356788999999998866654 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 151 DEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999764 999999999965 578899999999999999999988764
No 21
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.5e-46 Score=387.80 Aligned_cols=207 Identities=27% Similarity=0.388 Sum_probs=173.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecCCCC-
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQDDIL- 162 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~l- 162 (679)
++++|+||||+|++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...++.+|||+|++.+
T Consensus 33 ~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 45799999999999999999999999999999999999986 4899999997653 1346789999999754
Q ss_pred -CCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 163 -YPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 163 -~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+.+||+||+.++...... .....++..++++++++.+||.+..++. +..|||||||||+|||||+.+|++||
T Consensus 110 ~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqRv~lAraL~~~p~lLl 184 (279)
T 2ihy_A 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----IGYLSTGEKQRVMIARALMGQPQVLI 184 (279)
T ss_dssp SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 3357999999875321100 0011234456788999999998766654 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTI--VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~ti--i~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+|||+.++..+++.|++++++|+|| |++||++. ++.++||++++|++|++++.|+++++
T Consensus 185 LDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 185 LDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999997779999 99999975 47789999999999999999988775
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1e-45 Score=384.06 Aligned_cols=204 Identities=27% Similarity=0.447 Sum_probs=176.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCC-CCCCCCCH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDD-ILYPHLTV 168 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~-~l~~~lTV 168 (679)
+++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.+|||+|++ .+++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 5699999999999999999999999999999999999986 48999999976533 3467899999995 56677999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT--KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
+||+.+..... .+..+.+++++++++.+||. +..++. +++|||||||||+|||||+.+|++|||||||+
T Consensus 97 ~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 167 (266)
T 2yz2_A 97 FDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRV-----PFFLSGGEKRRVAIASVIVHEPDILILDEPLV 167 (266)
T ss_dssp HHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCccc
Confidence 99999864321 11222345688999999998 766554 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++.+
T Consensus 168 ~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999877999999999976 4677899999999999999999888754
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.4e-45 Score=379.58 Aligned_cols=208 Identities=26% Similarity=0.356 Sum_probs=169.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--cCCCCCeeeEEEECCCCccc----c-ccCcEEEEecCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR--LHQGHGLTGTILTNNNKPTK----H-ISKRTGFVTQDD 160 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~--~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~Q~~ 160 (679)
|+++++|+|||+++++||+++|+||||||||||+|+|+|+ ++| .+|+|.++|.+... . .++.++||+|++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 89 (250)
T 2d2e_A 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYP 89 (250)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCC
T ss_pred ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCC
Confidence 3446799999999999999999999999999999999998 544 58999999976532 1 234689999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcc-cCHHHHHHHHHHHHHhhCCCe
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRG-ISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~-LSgGerqRv~IA~aL~~~P~l 238 (679)
.+++.+||+||+.+.............+..++++++++.+||. +..++. +.. |||||||||+|||||+.+|++
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGqkQrv~iAraL~~~p~l 164 (250)
T 2d2e_A 90 VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFSGGEKKRNEILQLLVLEPTY 164 (250)
T ss_dssp C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC----HHHHHHHHHHHHHCCSE
T ss_pred ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999998864311111123344556788999999994 655544 456 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhh
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~ 304 (679)
|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+ ||++++|++|++++.|+++.
T Consensus 165 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 165 AVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999777999999999976 36666 59999999999999999873
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-44 Score=372.50 Aligned_cols=197 Identities=28% Similarity=0.400 Sum_probs=170.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++++|+|+|++|++||+++|+||||||||||||+|+|+++| .+|+|. .++.++||+|++.+++.+||+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~---------~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIE---------VYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC---SEEEEE---------ECSCEEEECSCCCCSSCCBHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---------EeccEEEEcCCCccCCCCCHH
Confidence 46799999999999999999999999999999999999986 478887 356799999999999999999
Q ss_pred HHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 170 ETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 170 E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
||+.++...... ......+.+++++++++.+||.+..++. +..|||||||||+|||||+.+|++|||||||+||
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999986432111 0011234456789999999998866654 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 249 DSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|+ ++.|+++++
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999999999877 999999999965 5778999999999999 999988775
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.1e-44 Score=374.33 Aligned_cols=218 Identities=29% Similarity=0.362 Sum_probs=178.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cc-cCcEEEEecCCCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HI-SKRTGFVTQDDILY 163 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~-~~~i~yv~Q~~~l~ 163 (679)
+++++|+|||++|++||+++|+||||||||||||+|+|+... .+.+|+|.++|.+... .. ++.++||+|++.++
T Consensus 31 ~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 346799999999999999999999999999999999998421 1358999999976532 11 34599999999999
Q ss_pred CCCCHHHHHHHHhh-hc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCc-ccCHHHHHHHHHHHHHhhCCC
Q 005754 164 PHLTVRETLVFCSL-LR---LPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIR-GISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 164 ~~lTV~E~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~-~LSgGerqRv~IA~aL~~~P~ 237 (679)
+.+||.||+.+... .+ .....+.++..++++++++.+||. +..++. +. +|||||||||+|||||+.+|+
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGq~QRv~iAraL~~~p~ 184 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-----VNVGFSGGEKKRNDILQMAVLEPE 184 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-----TTTTCCHHHHHHHHHHHHHHHCCS
T ss_pred ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHHHHHHHHHHHHHHhCCC
Confidence 99999999987531 11 111223445567789999999996 444443 43 499999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhhHHHHHHHcCC
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~ 314 (679)
+|||||||+|||+.++..+++.|++++++|+|||++||++.. +..+ ||++++|++|++++.|+++++.. .+..|+
T Consensus 185 lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 185 LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 999999999999999999999999997779999999999753 5555 89999999999999999987653 344444
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.5e-44 Score=371.20 Aligned_cols=201 Identities=26% Similarity=0.458 Sum_probs=168.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
++.+|+|||++|++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.+|||+|++.+++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~- 96 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 96 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-
Confidence 35799999999999999999999999999999999999986 48999999976532 34567999999998887
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTII------GNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.||+||+.++. + ... .++++++++.+++.+..+... -++.+..|||||||||+|||||+.+|++|
T Consensus 97 ~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 97 RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 59999998752 1 112 234567777888765443221 12346789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++..+++.|++++ +|+|||++||++.. + +.||++++|++|++++.|+++++.
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999995 59999999999763 4 569999999999999999988763
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1e-44 Score=377.39 Aligned_cols=202 Identities=27% Similarity=0.389 Sum_probs=168.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+||||+|++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 5699999999999999999999999999999999999986 48999999976532 24567999999998887 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKE-----KTSIAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++... .....+ ....++++++.+ |+.+..+. .+..|||||||||+|||||+.+|++|
T Consensus 108 tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgGq~QRv~lAraL~~~p~ll 178 (271)
T 2ixe_A 108 SFRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGGQRQAVALARALIRKPRLL 178 (271)
T ss_dssp BHHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cHHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999875321 111111 122346677777 66654443 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++..+++.|+++++ +|+|||++||++. .+ ..||++++|++|+++..|+++++.+
T Consensus 179 lLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999965 5999999999975 34 4699999999999999999988753
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.5e-44 Score=368.68 Aligned_cols=196 Identities=29% Similarity=0.400 Sum_probs=172.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lT 167 (679)
++|+|+|+++++||+++|+||||||||||||+|+|+++| . |+|.++|.+... ..++.++||+|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 479999999999999999999999999999999999875 5 999999976532 34567999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC-------eEE
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-------LLI 240 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~-------lll 240 (679)
|+||+.+... +. .+ +++++++++.+||.+..++. +..|||||||||+|||||+.+|+ +||
T Consensus 90 v~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll 156 (249)
T 2qi9_C 90 VWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 156 (249)
T ss_dssp HHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred HHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE
Confidence 9999987521 11 11 45688899999998866654 45799999999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 157 LDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp ESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999877999999999965 57789999999999999999988775
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.7e-44 Score=379.46 Aligned_cols=200 Identities=29% Similarity=0.471 Sum_probs=168.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+||||+|++||++||+||||||||||+|+|+|+++| .+|+|.++|.+... .+++.+|||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 5699999999999999999999999999999999999986 48999999987542 45778999999999986 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++... ...+ .++++++..++.+ ..++.++ +.+..|||||||||+|||||+.+|+||
T Consensus 143 Tv~eNi~~~~~~-----~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~iL 212 (306)
T 3nh6_A 143 TIADNIRYGRVT-----AGND----EVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAPGII 212 (306)
T ss_dssp EHHHHHHTTSTT-----CCHH----HHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cHHHHHHhhccc-----CCHH----HHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999876321 1222 2344444444432 3456665 356789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||||||+.++..|++.|+++.+ ++|+|++||+++. +. .||+|++|++|++++.|+++++++
T Consensus 213 lLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 213 LLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-HH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-HH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999865 7899999999753 54 599999999999999999998764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-44 Score=369.15 Aligned_cols=204 Identities=29% Similarity=0.396 Sum_probs=172.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYP 164 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~ 164 (679)
+++++|+|||++|++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...++.++||+|++.+++
T Consensus 13 ~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~ 89 (243)
T 1mv5_A 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89 (243)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC
T ss_pred CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc
Confidence 346799999999999999999999999999999999999986 3799999997643 235678999999998887
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTII------GNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
.||+||+.++.. + ... .++++++++.+++.+..+... -++.+..|||||||||+|||||+.+|++
T Consensus 90 -~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 90 -GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp -EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred -ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 599999987421 1 112 234677889999987655432 1234678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||||+|||+.++..+++.|++++ +|+|||++||++. .+ ..||++++|++|++++.|+++++.+
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999997 6999999999975 34 5699999999999999999887653
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7.8e-43 Score=361.16 Aligned_cols=199 Identities=27% Similarity=0.434 Sum_probs=166.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|||++|++||+++|+||||||||||||+|+|++++ +|+|.++|.+... ..++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999863 6999999976532 34678999999999886 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.. .... +++.++++.+++.+ ..++.++ +.+..|||||||||+|||||+.+|++|
T Consensus 108 tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~ll 177 (260)
T 2ghi_A 108 TIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIV 177 (260)
T ss_dssp EHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999987421 1122 23455666666543 3444443 457789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++..+++.|+++++ |+|||++||++.. + ..||++++|++|+++..|+++++..
T Consensus 178 lLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 178 IFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999965 8999999999764 4 5699999999999999999888653
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-44 Score=358.91 Aligned_cols=196 Identities=18% Similarity=0.318 Sum_probs=165.2
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL 162 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l 162 (679)
+++++|++ ++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ..++.++||+|++.+
T Consensus 15 ~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~-~~~~~i~~v~q~~~~ 89 (214)
T 1sgw_A 15 DLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPIT-KVKGKIFFLPEEIIV 89 (214)
T ss_dssp EEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGG-GGGGGEEEECSSCCC
T ss_pred EEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEhh-hhcCcEEEEeCCCcC
Confidence 33444556 799999999999999999999999999999999999986 4899999997654 456789999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+....+.. . .+ +++++++++.+||++. +. .+.+|||||||||+||+||+.+|++||||
T Consensus 90 ~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 90 PRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp CTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999999999987543211 1 11 3567889999999875 44 45579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
|||+|||+.++..+++.|++++++|+|||++||++.. +..++|+++++ +|+|
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 9999999999999999999998678999999999764 77788888755 3544
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.7e-43 Score=363.80 Aligned_cols=193 Identities=23% Similarity=0.262 Sum_probs=168.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEE-EEecCCCCCCCCCH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTG-FVTQDDILYPHLTV 168 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~-yv~Q~~~l~~~lTV 168 (679)
+++|+|+|++++ ||+++|+||||||||||||+|+|++ |+ +|+|.++|.+... ..++.++ ||+|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 579999999999 9999999999999999999999998 74 8999999976432 1256799 99999887 7999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
+||+.+..... .. .+++++++++.+||. +..+++ +.+|||||||||+|||||+.+|++|||||||+|
T Consensus 91 ~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 91 NDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRK-----LYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp HHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred HHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 99999865432 11 134678899999998 766544 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCC-eEEEEeCCeEEEecChhhHH
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD-KVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D-~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+.++..+.+.|+++++ |||++||++. .+.++|| ++++|++|++++.|+++++.
T Consensus 159 LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 159 VDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp CCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred cCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999999999999854 9999999975 4678999 99999999999999998875
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.9e-42 Score=349.48 Aligned_cols=190 Identities=26% Similarity=0.444 Sum_probs=156.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++| +++|++|++.+++. ||+
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g---------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEECS---------CEEEECSSCCCCSB-CHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEECC---------EEEEEecCCcccCC-CHH
Confidence 35799999999999999999999999999999999999986 489999988 38999999998885 999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
||+.++.. .... +.++.++.+++.+. .++.++ +.+..|||||||||+|||||+.+|++||||
T Consensus 87 enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLD 155 (229)
T 2pze_A 87 ENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLD 155 (229)
T ss_dssp HHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99987421 1111 12334444444322 222333 346789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVST-LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~-L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+|||+.++..+++. ++++. +|+|||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999997 45664 4899999999965 34 469999999999999999988764
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5e-42 Score=350.41 Aligned_cols=196 Identities=24% Similarity=0.416 Sum_probs=155.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+|++|++||+++|+||||||||||||+|+|+++| .+|+|.++| .++||+|++.+ +.+||+|
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g---------~i~~v~Q~~~~-~~~tv~e 84 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG---------SVAYVPQQAWI-QNDSLRE 84 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS---------CEEEECSSCCC-CSEEHHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC---------EEEEEcCCCcC-CCcCHHH
Confidence 5699999999999999999999999999999999999986 589999998 38999999865 5789999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD 249 (679)
|+.+.... .....+......++.+.+++.+ ..++.+ ++.+..|||||||||+|||||+.+|++|||||||+|||
T Consensus 85 nl~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 159 (237)
T 2cbz_A 85 NILFGCQL----EEPYYRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159 (237)
T ss_dssp HHHTTSCC----CTTHHHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred HhhCcccc----CHHHHHHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 99875321 1011111011111223333322 112223 34577899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---HHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 250 STAAYRLVSTLG---SLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 250 ~~~~~~i~~~L~---~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+.++..+++.|+ +++ +|+|||++||++.. + ..||++++|++|++++.|+++++.+
T Consensus 160 ~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 160 AHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 999999999995 443 48999999999764 4 5799999999999999999887643
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-42 Score=376.21 Aligned_cols=200 Identities=25% Similarity=0.304 Sum_probs=168.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
++.+|+||||+|++||+++|+||||||||||||+|+|+++ .+|+|.++|++... ..++.+|||||++.+|+
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 4679999999999999999999999999999999999975 37999999987542 34678999999999998
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN------SFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+||+||+.+.. ... +++++++++.++|.+..++.... +....|||||||||+|||||+.+|++|
T Consensus 108 ~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lL 177 (390)
T 3gd7_A 108 GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 177 (390)
T ss_dssp EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999996321 112 34577889999998765543321 112239999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||||||+..+..+.+.|+++. +++|+|++||+.. ....||||++|++|+++..|+++++.+
T Consensus 178 LLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 178 LLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999864 4899999999964 456799999999999999999998754
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.3e-40 Score=379.59 Aligned_cols=202 Identities=29% Similarity=0.480 Sum_probs=170.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+..+ ..+++++||+|++.+++.
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~- 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP---ASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC- 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC---SEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-
Confidence 4699999999999999999999999999999999999986 48999999976532 356789999999999875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.... ...+ +++++++++.+++. +..|+.+|+ .+..||||||||++|||||+++|++|
T Consensus 433 tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~il 505 (595)
T 2yl4_A 433 SIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKIL 505 (595)
T ss_dssp BHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998853210 0112 24466777777764 345777764 46789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|||||||||+.+++.+.+.|+++.+ |+|+|++||+++. + +.||++++|++|++++.|+++++.
T Consensus 506 llDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 506 LLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp EEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEETTEEEEEECSCC--
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999976 8999999999753 4 569999999999999999998864
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.5e-40 Score=381.57 Aligned_cols=201 Identities=27% Similarity=0.395 Sum_probs=171.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++.++||+|++.+++.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~- 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND- 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-
Confidence 5699999999999999999999999999999999999986 48999999977532 356789999999999985
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.. + ..++ ++++++++.+++.+ ..|+.+|+ .+..||||||||++|||||+++|+++
T Consensus 432 tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~il 502 (582)
T 3b60_A 432 TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_dssp BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEE
T ss_pred CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999987531 1 1222 34566677776653 34566664 46789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||||||+.++..+.+.|+++.+ |+|+|++||+++. + +.||++++|++|++++.|+++++.+
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 503 ILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999975 9999999999864 4 5799999999999999999988754
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9.8e-41 Score=382.64 Aligned_cols=200 Identities=30% Similarity=0.466 Sum_probs=169.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++++|||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 5699999999999999999999999999999999999986 48999999987543 456789999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++. + ..+.+ .+.+.++..++ .+..++.+|+ .+..||||||||++|||||+++|+++
T Consensus 430 tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~il 499 (578)
T 4a82_A 430 TVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPIL 499 (578)
T ss_dssp BHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred cHHHHHhcCC----C-CCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998752 1 12222 23344444443 4456677764 46689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||||||+.++..+.+.|+++. +++|+|++||+++. + +.||++++|++|++++.|+++++.+
T Consensus 500 llDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 500 ILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999985 47999999999864 4 5699999999999999999998754
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.1e-40 Score=382.60 Aligned_cols=201 Identities=26% Similarity=0.442 Sum_probs=170.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||.+.. ...+++++||+|++.+++.
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~- 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND- 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-
Confidence 46899999999999999999999999999999999999874 799999997653 2457789999999999875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.. + ..+ +++++++++.+++.+ ..|+.+|+ ....||||||||++|||||+++|++|
T Consensus 432 tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~il 502 (582)
T 3b5x_A 432 TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVL 502 (582)
T ss_pred cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999987531 1 112 234666777777654 34566664 46789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||||||+.++..+.+.|+++.+ |+|+|++||+++. + +.||++++|++|++++.|+++++.+
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 503 ILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999865 9999999999753 4 5799999999999999999988743
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-40 Score=381.77 Aligned_cols=200 Identities=27% Similarity=0.435 Sum_probs=168.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+||.+... .++++++||+|++.+|+.
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG- 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-
Confidence 5699999999999999999999999999999999999986 48999999988643 457789999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.. ..+.++ +.+.++..+ +.+..++.+++ .+..||||||||++|||||+++|++|
T Consensus 432 tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~il 501 (587)
T 3qf4_A 432 TIKENLKWGRE-----DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVL 501 (587)
T ss_dssp EHHHHHTTTCS-----SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEE
T ss_pred cHHHHHhccCC-----CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 99999987521 122322 222333332 34455676764 56789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+.+.|+++. +|+|+|++||+++. ...||||++|++|++++.|+++++.+
T Consensus 502 llDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 502 ILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999985 58999999999753 46899999999999999999998764
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-40 Score=380.82 Aligned_cols=200 Identities=29% Similarity=0.466 Sum_probs=167.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... .++++++||+|++.+|+.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST- 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-
Confidence 5699999999999999999999999999999999999986 48999999987543 456789999999999864
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.. ..++++ ++++++..++ .+..++.+|+ ....||||||||++|||||+++|++|
T Consensus 444 tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~il 513 (598)
T 3qf4_B 444 TVKENLKYGNP-----GATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKIL 513 (598)
T ss_dssp BHHHHHHSSST-----TCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred cHHHHHhcCCC-----CCCHHH----HHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 112222 3333333333 3345566653 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+.+.|+++. +|+|+|++||+++. + +.||+|++|++|++++.|+++++.+
T Consensus 514 llDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 514 ILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999986 58999999999874 4 5599999999999999999998754
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3e-39 Score=338.96 Aligned_cols=188 Identities=26% Similarity=0.447 Sum_probs=153.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+||+|++||+++|+||||||||||||+|+|+++| .+|+|.++| +++||+|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS---------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC---------EEEEEeCCCccCcc-cHHH
Confidence 5699999999999999999999999999999999999875 589999987 38999999988885 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
|+. +. . .... .+++.++.+++.+. .++.++ +.+..|||||||||+|||||+.+|++|||||
T Consensus 118 nl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 32 1 1111 22334455555332 122232 2357899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTL-GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L-~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+|||+.++..+++.+ +++. +|+|||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999974 5554 4899999999974 34 569999999999999999998874
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.3e-39 Score=399.87 Aligned_cols=202 Identities=28% Similarity=0.451 Sum_probs=174.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
.++|+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|.+||.+... .+|++++||||++.+|+.
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g- 1167 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC- 1167 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-
Confidence 56999999999999999999999999999999999999874 7999999987643 578999999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.|+.. |...+.++ +.++++..+ |++..||.+|+ ....||||||||++|||||+++|+||
T Consensus 1168 TIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1168 SIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp EHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred cHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEE
Confidence 99999987532 22334433 444555444 45678999986 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+++...|.+.|+++. +|+|+|+++|+++. ...||||++|++|+|+++|+++++++
T Consensus 1240 iLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred EEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999998875 48999999999874 56799999999999999999999875
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1e-37 Score=386.49 Aligned_cols=201 Identities=27% Similarity=0.436 Sum_probs=173.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
++++|+|+|++|++||.+||+||||||||||+++|.|.++| .+|+|.+||.+... .+|++++||+|++.+|..
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~ 506 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC 506 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccHHHHhhcccccCCcceeeCC
Confidence 36799999999999999999999999999999999999986 48999999987543 567889999999999875
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-------GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
|++|||.|+.. ..+.++ +.++++.. .|++..||.+|++ ...||||||||++||||++++|+|
T Consensus 507 -TI~eNI~~g~~-----~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~I 575 (1321)
T 4f4c_A 507 -TIEENISLGKE-----GITREE----MVAACKMANAEKFIKTLPNGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKI 575 (1321)
T ss_dssp -EHHHHHHTTCT-----TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSE
T ss_pred -chhHHHhhhcc-----cchHHH----HHHHHHHccchhHHHcCCCCCccEecCC-CCCCCHHHHHHHHHHHHHccCCCE
Confidence 99999998631 233333 33333333 3467789999964 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||||+||++++..+.+.|+++.+ |+|+|+++|+++ ..+.||+|++|++|+|++.|+.+|+++
T Consensus 576 liLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 576 LLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999999999864 899999999986 468899999999999999999999864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.6e-37 Score=381.96 Aligned_cols=202 Identities=26% Similarity=0.418 Sum_probs=169.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|||+++++||++||+||||||||||+++|+|+++| .+|+|.++|.+... .+++.+|||+|++.+++.
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~- 478 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT- 478 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-
Confidence 4699999999999999999999999999999999999986 48999999987532 456789999999999976
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIA-----EAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
||+||+.++.. ..+.++..+.+ .+.++. +.+..||.+|+ .+..||||||||++|||||+++|+||+|
T Consensus 479 ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliL 550 (1284)
T 3g5u_A 479 TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLL 550 (1284)
T ss_dssp CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--ccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999998632 12333332222 222332 34566787874 4678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+||+.++..+.+.|+++. +|+|+|+++|+++. + ..||+|++|++|++++.|++++..+
T Consensus 551 DEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 551 DEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp ESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998875 48999999999753 4 5699999999999999999998764
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1e-36 Score=376.68 Aligned_cols=206 Identities=26% Similarity=0.455 Sum_probs=169.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||++||+||||||||||+++|+|+++| .+|+|.++|.+... .++++++||||++.+++ .
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-C 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-S
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-c
Confidence 4689999999999999999999999999999999999986 48999999987642 46788999999998875 6
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHH-H-HH-cCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAV-M-AE-LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~-l-~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
||+||+.++... ...+.++..+..++. + +. -.+.+..||.+|+ .+..|||||||||+|||||+++|+||+|||
T Consensus 1122 ti~eNi~~~~~~---~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDE 1197 (1284)
T 3g5u_A 1122 SIAENIAYGDNS---RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDE 1197 (1284)
T ss_dssp BHHHHHTCCCSS---CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEES
T ss_pred cHHHHHhccCCC---CCCCHHHHHHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999999875321 122333332222211 0 11 1345567888885 467899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||+|||+.++..+.+.|+++ .+|+|||+++|+++. + ..||||++|++|++++.|+++++++
T Consensus 1198 pTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1198 ATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp CSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999885 458999999999874 4 6699999999999999999998754
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.2e-36 Score=344.34 Aligned_cols=202 Identities=22% Similarity=0.270 Sum_probs=169.4
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~ 159 (679)
..+++++.|++ ..|+++|+++++||+++|+||||||||||||+|+|+++|+ +|+|.+ .+.++|++|+
T Consensus 359 ~~~~l~~~~~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~---------~~~i~~v~Q~ 425 (607)
T 3bk7_A 359 EYPRLVKDYGS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW---------DLTVAYKPQY 425 (607)
T ss_dssp EECCEEEECSS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC---------CCCEEEECSS
T ss_pred EEeceEEEecc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE---------eeEEEEEecC
Confidence 34455555654 3689999999999999999999999999999999999874 566654 3469999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
....+.+||.|++....... ....++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|
T Consensus 426 ~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lL 493 (607)
T 3bk7_A 426 IKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIY 493 (607)
T ss_dssp CCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred ccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEE
Confidence 88778899999886531100 112356788999999987666554 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC--CeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE--GRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++..+++.|+++++ +|.|||++|||+. .+..+|||+++|++ |+++..|+++++.+
T Consensus 494 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999974 6999999999965 58889999999986 88899999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.6e-36 Score=340.40 Aligned_cols=202 Identities=23% Similarity=0.268 Sum_probs=167.4
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCC
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~ 160 (679)
.+++++.|++ ..|+++|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.+ ...++||+|+.
T Consensus 290 ~~~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~---------~~~i~~v~Q~~ 356 (538)
T 1yqt_A 290 YPRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW---------DLTVAYKPQYI 356 (538)
T ss_dssp ECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC---------CCCEEEECSSC
T ss_pred EeeEEEEECC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE---------CceEEEEecCC
Confidence 3444445544 3689999999999999999999999999999999999874 566654 24699999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
...+.+||.|++........ ...++++++++.+|+.+..++. +..|||||||||+||++|+.+|++||
T Consensus 357 ~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~qrv~lAraL~~~p~lLl 424 (538)
T 1yqt_A 357 KADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDRE-----VNELSGGELQRVAIAATLLRDADIYL 424 (538)
T ss_dssp CCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHTSCCSEEE
T ss_pred cCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 87788999998865311110 1134578889999997765554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC--CeEEEecChhhHHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE--GRCLYFGKGSEAMSY 308 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~~ 308 (679)
|||||+|||+.++..+++.|+++++ .|.|||++|||.. ++..+|||+++|++ |+++..|+++++.+-
T Consensus 425 LDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 9999999999999999999999974 5999999999964 58889999999986 889999999887653
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4e-35 Score=332.12 Aligned_cols=202 Identities=23% Similarity=0.285 Sum_probs=165.8
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCC
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~ 160 (679)
.+++++.+++ ..|+++|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.+++ +.++|++|+.
T Consensus 272 ~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~--------~~i~~~~q~~ 339 (538)
T 3ozx_A 272 WTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK--------QILSYKPQRI 339 (538)
T ss_dssp ECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC--------CCEEEECSSC
T ss_pred EcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------eeeEeechhc
Confidence 3445555554 4678889999999999999999999999999999999874 78887654 3589999997
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.....+||.||+.+..... .. .....++++++.++|.+..++. +..|||||||||+|||||+.+|++||
T Consensus 340 ~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~QRv~iAraL~~~p~lLl 408 (538)
T 3ozx_A 340 FPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESN-----VNDLSGGELQKLYIAATLAKEADLYV 408 (538)
T ss_dssp CCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred ccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 7667899999998742111 00 1123567889999998766554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC--CeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE--GRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++..+++.|+++++ .|.|||++|||+. ++..+||||++|++ |.....+++.++.
T Consensus 409 LDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999975 5999999999965 68899999999986 6677777776543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=329.88 Aligned_cols=201 Identities=21% Similarity=0.258 Sum_probs=164.7
Q ss_pred Cccccccc-cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEE
Q 005754 83 GSTAKIQE-RTILNGITGMVSPG-----EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFV 156 (679)
Q Consensus 83 ~~~~~~~~-~~iL~~vs~~i~~G-----e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv 156 (679)
+....|.+ +.+++|+|+++++| |+++|+||||||||||||+|+|+.+|+ +|+ .. .+..++|+
T Consensus 351 ~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~------~~---~~~~i~~~ 418 (608)
T 3j16_B 351 SRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQ------DI---PKLNVSMK 418 (608)
T ss_dssp SSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCC------CC---CSCCEEEE
T ss_pred ceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCc------Cc---cCCcEEEe
Confidence 34445543 45899999999999 789999999999999999999999875 343 11 13469999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|+.......||+|++.... + .... ..+.++++++.++|.+..++. +..|||||||||+|||+|+.+|
T Consensus 419 ~q~~~~~~~~tv~e~~~~~~--~--~~~~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 419 PQKIAPKFPGTVRQLFFKKI--R--GQFL---NPQFQTDVVKPLRIDDIIDQE-----VQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp CSSCCCCCCSBHHHHHHHHC--S--STTT---SHHHHHHTHHHHTSTTTSSSB-----SSSCCHHHHHHHHHHHHTTSCC
T ss_pred cccccccCCccHHHHHHHHh--h--cccc---cHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHHhCC
Confidence 99977666679999875422 1 1111 123567899999998866654 5579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC--CeEEEecChhhHHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE--GRCLYFGKGSEAMSY 308 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~~ 308 (679)
++|||||||+|||+.++..+++.|+++++ .|.|||++|||+. ++..+|||+++|++ |+++..|+|++++.-
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999999999999999864 5999999999964 68899999999996 999999999988653
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.5e-35 Score=339.05 Aligned_cols=209 Identities=24% Similarity=0.328 Sum_probs=140.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHhcCcCCCCC----eeeEEEECCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTML---------------------NVLAGRLHQGHG----LTGTILTNNNK 144 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL---------------------~~L~G~~~~~~~----~~G~i~~~g~~ 144 (679)
.+.+|+||||+|++||+++|+||||||||||+ ++++|+..|+.+ ..+.+.+++..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 888887776532 24667777765
Q ss_pred ccccccCcEEEEecCCC-------------------CCCCCCHHHHHHHHhhhcCCCCCCHHHHH------HHHHHHHHH
Q 005754 145 PTKHISKRTGFVTQDDI-------------------LYPHLTVRETLVFCSLLRLPRTLSTKEKT------SIAEAVMAE 199 (679)
Q Consensus 145 ~~~~~~~~i~yv~Q~~~-------------------l~~~lTV~E~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~ 199 (679)
.....++.+++|+|... .++.+||+||+.+......... ...... ....++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 44333445555555432 2467899999987432211110 000000 111235888
Q ss_pred cCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005754 200 LGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINPS--LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 200 lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~--lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~ 276 (679)
+||.+. .++ .+.+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 344 455799999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 277 PSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 277 ~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
+. ....||++++| ++|++++.|+++++.
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 75 34579999999 899999999998864
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-34 Score=329.09 Aligned_cols=191 Identities=27% Similarity=0.334 Sum_probs=155.7
Q ss_pred CCcccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEE---------EECCCCccc----
Q 005754 82 QGSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI---------LTNNNKPTK---- 147 (679)
Q Consensus 82 ~~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i---------~~~g~~~~~---- 147 (679)
++++++|+++ .+|+|+| +|++||+++|+||||||||||||+|+|+++|+.| ++ .++|.....
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G---~~~~~~~~~~~~~~g~~~~~~~~~ 100 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLC---GDNDSWDGVIRAFRGNELQNYFEK 100 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT---TTCCSHHHHHHHTTTSTHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ccCcchhhhHHhhCCccHHHHHHH
Confidence 5677888776 4999999 9999999999999999999999999999987643 33 245544321
Q ss_pred --cccCcEEEEecCCCCCCC---CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH
Q 005754 148 --HISKRTGFVTQDDILYPH---LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE 222 (679)
Q Consensus 148 --~~~~~i~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 222 (679)
..+..+++++|+..+++. .|+.|++.... ..++++++++.+||.+..++. +.+|||||
T Consensus 101 ~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~-----~~~LSgGe 163 (538)
T 1yqt_A 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLERE-----IQHLSGGE 163 (538)
T ss_dssp HHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSB-----GGGCCHHH
T ss_pred HHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCC-----hhhCCHHH
Confidence 112468899987544332 38999875311 123477899999998766654 45799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 223 rqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
||||+||+||+.+|++|||||||++||+.++..+++.|++++++|.|||++||+.. .+..+||+|++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999999999888999999999964 688999999999864
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.7e-34 Score=335.69 Aligned_cols=193 Identities=23% Similarity=0.298 Sum_probs=159.0
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCC-C
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD-I 161 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~-~ 161 (679)
+++++|+++.+|+|+||++++||+++|+||||||||||||+|+| |++ +|.+... ..+++|++|+. .
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~--~~~~~~v~q~~~~ 506 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE--ECRTVYVEHDIDG 506 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT--TSCEEETTCCCCC
T ss_pred eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc--ceeEEEEcccccc
Confidence 45556677889999999999999999999999999999999995 111 2322211 12478999884 6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+++.+||.|++.+ .. . .. +++++++++.+||. +..++++ ..|||||||||+|||+|+.+|++||
T Consensus 507 ~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 507 THSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp CCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred cccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7889999999975 11 1 11 45688899999995 4455444 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE-EecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL-YFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 307 (679)
|||||+|||+.++..+.+.|++ .|.|||++||+.. .+.++||++++|++|+++ +.|++++..+
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999998 5899999999964 588899999999999997 7899988654
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-34 Score=332.07 Aligned_cols=192 Identities=26% Similarity=0.343 Sum_probs=155.9
Q ss_pred CCcccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEE---------EECCCCccc----
Q 005754 82 QGSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI---------LTNNNKPTK---- 147 (679)
Q Consensus 82 ~~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i---------~~~g~~~~~---- 147 (679)
++++++|+++ .+|+|+| ++++||+++|+||||||||||||+|+|+++|+.| ++ .++|.....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G---~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC---EDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTT---TTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCC---ccccccchhhheeCCEehhhhhhh
Confidence 5677788776 4999999 9999999999999999999999999999987644 33 345554321
Q ss_pred --cccCcEEEEecCCCCCC---CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH
Q 005754 148 --HISKRTGFVTQDDILYP---HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE 222 (679)
Q Consensus 148 --~~~~~i~yv~Q~~~l~~---~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 222 (679)
..+..+++++|.....+ ..||.|++... . ..++++++++.+||.+..++.+ ++|||||
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------~-----~~~~~~~~L~~lgL~~~~~~~~-----~~LSGGe 233 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------D-----EVGKFEEVVKELELENVLDREL-----HQLSGGE 233 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-------C-----CSSCHHHHHHHTTCTTGGGSBG-----GGCCHHH
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhh-------H-----HHHHHHHHHHHcCCCchhCCCh-----hhCCHHH
Confidence 12345889998743322 23999998631 0 1134778999999988766554 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 223 rqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+..++|+|++|+++.
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999999999999999888999999999965 5788999999998653
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.1e-32 Score=318.90 Aligned_cols=201 Identities=28% Similarity=0.408 Sum_probs=147.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc-----CcCC-----C--------CCeeeEEEECCCCccccc---
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG-----RLHQ-----G--------HGLTGTILTNNNKPTKHI--- 149 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G-----~~~~-----~--------~~~~G~i~~~g~~~~~~~--- 149 (679)
+.+|+|||++|++||+++|+||||||||||+++|.+ .+.. . ....|.+.+++.+.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 458999999999999999999999999999987641 1000 0 012356677665432100
Q ss_pred ------------------------------------------cCcEEEEecCCCCCC-----------------------
Q 005754 150 ------------------------------------------SKRTGFVTQDDILYP----------------------- 164 (679)
Q Consensus 150 ------------------------------------------~~~i~yv~Q~~~l~~----------------------- 164 (679)
.+..|+++|+..++|
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 012244444433322
Q ss_pred ---------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 165 ---------HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 165 ---------~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
.+||.||+.+.... . ..+++.+.++.+||.... .++.+.+|||||||||+|||||+.+
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~----~~~~~~~LSgG~~qrv~iAraL~~~ 561 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMK----LGQPATTLSGGEAQRVKLAAELHRR 561 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSB----TTCCGGGCCHHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhh----ccCCchhCCHHHHHHHHHHHHHhhC
Confidence 47999999874321 1 224456778889986421 1345568999999999999999998
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 236 P---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
| ++|||||||+|||+.++..+++.|++++++|.|||++|||+. . ...||||++| ++|++++.|+++++.
T Consensus 562 p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 562 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp CCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 7 499999999999999999999999999988999999999975 3 4779999999 899999999998873
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=4.7e-33 Score=329.89 Aligned_cols=192 Identities=26% Similarity=0.382 Sum_probs=149.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCC----CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL----YPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l----~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.+++. .+++|++|+... ....
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P---~sG~I~~~~~-------~~I~yv~Q~~~~~l~~~~~~ 755 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP---TSGEVYTHEN-------CRIAYIKQHAFAHIESHLDK 755 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC---SEEEEEECTT-------CCEEEECHHHHHHGGGCTTS
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEcCc-------cceEeeccchhhhhhccccc
Confidence 5799999999999999999999999999999999999986 4899999863 248899887521 2245
Q ss_pred CHHHHHHHHhhhc------------CC----------------------------------------------------C
Q 005754 167 TVRETLVFCSLLR------------LP----------------------------------------------------R 182 (679)
Q Consensus 167 TV~E~l~~~~~~~------------~~----------------------------------------------------~ 182 (679)
|+.|++.+..... .. .
T Consensus 756 t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~ 835 (986)
T 2iw3_A 756 TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWV 835 (986)
T ss_dssp CHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEE
T ss_pred CHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhccccccc
Confidence 7888776421000 00 0
Q ss_pred CC--------C--------------------------HHHHHHHHHHHHHHcCCCcc--ccccccCccCcccCHHHHHHH
Q 005754 183 TL--------S--------------------------TKEKTSIAEAVMAELGLTKC--ENTIIGNSFIRGISGGERKRV 226 (679)
Q Consensus 183 ~~--------~--------------------------~~~~~~~v~~~l~~lgL~~~--~~~~vg~~~~~~LSgGerqRv 226 (679)
.. + .....++++++++.+||.+. .+. .+++|||||||||
T Consensus 836 ~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~-----~~~~LSGGQkQRV 910 (986)
T 2iw3_A 836 PMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS-----RIRGLSGGQKVKL 910 (986)
T ss_dssp ECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS-----CGGGCCHHHHHHH
T ss_pred ccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC-----CccccCHHHHHHH
Confidence 00 0 00013467889999999742 333 3457999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 227 ~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
+|||+|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||++. .+.++||++++|++|+++..|+
T Consensus 911 aLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 911 VLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999988765 679999999964 5778999999999999987774
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-31 Score=305.06 Aligned_cols=197 Identities=22% Similarity=0.277 Sum_probs=148.3
Q ss_pred CCcccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEE-----------EECCCCccc--
Q 005754 82 QGSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI-----------LTNNNKPTK-- 147 (679)
Q Consensus 82 ~~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i-----------~~~g~~~~~-- 147 (679)
.+++++|+.. ..|++++ .+++||+++|+||||||||||||+|+|+++|+. |+| .+.|.....
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~ 156 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYF 156 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhh
Confidence 3567778765 4677777 689999999999999999999999999998864 444 122322111
Q ss_pred --cccCc--EEEEecCCCC------CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcc
Q 005754 148 --HISKR--TGFVTQDDIL------YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG 217 (679)
Q Consensus 148 --~~~~~--i~yv~Q~~~l------~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 217 (679)
...+. ..+.+|.... -+..++.+++.... . ...++++++++.+||.+..++.+ ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~-----~~ 221 (608)
T 3j16_B 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDI-----EK 221 (608)
T ss_dssp HHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCT-----TT
T ss_pred hHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCCh-----HH
Confidence 01111 2233443211 12235666554311 0 12356888999999988766554 57
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 218 LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ++..++|++++|++|..+
T Consensus 222 LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCccc
Confidence 9999999999999999999999999999999999999999999999888999999999965 688999999999987655
Q ss_pred E
Q 005754 298 Y 298 (679)
Q Consensus 298 ~ 298 (679)
|
T Consensus 301 ~ 301 (608)
T 3j16_B 301 Y 301 (608)
T ss_dssp E
T ss_pred c
Confidence 4
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.4e-31 Score=303.04 Aligned_cols=190 Identities=20% Similarity=0.220 Sum_probs=141.9
Q ss_pred cccccccceeeceEEE-EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEE-----------EECCCCcccc----
Q 005754 85 TAKIQERTILNGITGM-VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI-----------LTNNNKPTKH---- 148 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~-i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i-----------~~~g~~~~~~---- 148 (679)
+.+|+.+- ++-..+. +++||++||+||||||||||||+|+|+++|+ +|++ .++|.+....
T Consensus 6 ~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 6 IHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp EEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred ceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 34554432 3333333 3599999999999999999999999999875 4555 4555543211
Q ss_pred c--cCcEEEEecCCCCC---CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHH
Q 005754 149 I--SKRTGFVTQDDILY---PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGER 223 (679)
Q Consensus 149 ~--~~~i~yv~Q~~~l~---~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 223 (679)
. ...+..+.|..... ...||+|++... +.+++++++++.+|+.+..++.+ +.||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~ 144 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDA-----NILSGGGL 144 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBG-----GGCCHHHH
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 1 12344444443221 224888866421 11234678899999988766554 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
|||+||+||+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. ++..+||+|++|++|...
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence 999999999999999999999999999999999999999976 999999999964 688999999999875443
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=7.2e-30 Score=302.41 Aligned_cols=201 Identities=27% Similarity=0.412 Sum_probs=153.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHhcCcCCCCC---ee------eEEEECCCCcccc----
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTML---------NVLAGRLHQGHG---LT------GTILTNNNKPTKH---- 148 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL---------~~L~G~~~~~~~---~~------G~i~~~g~~~~~~---- 148 (679)
...|+|||++|++|++++|+||||||||||+ +.+.+...+.+. .. +.+.++..+....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 444443322111 12 3344443322100
Q ss_pred -----------------------------------------ccCcEEEEecCCCCCC-----------------------
Q 005754 149 -----------------------------------------ISKRTGFVTQDDILYP----------------------- 164 (679)
Q Consensus 149 -----------------------------------------~~~~i~yv~Q~~~l~~----------------------- 164 (679)
..+..|++.|+..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0123578888776655
Q ss_pred ---------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 165 ---------HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 165 ---------~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
.+||.|++.|.... ....++.++|+.+||.... + ++.+.+|||||||||+|||||+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhC
Confidence 36888888874321 1234567899999996521 2 245668999999999999999987
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 236 P---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
| +||||||||+|||+.++..+++.|++++++|.|||+++|++. ....||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 6 799999999999999999999999999988999999999974 34679999999 899999999999875
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=4.4e-30 Score=302.25 Aligned_cols=199 Identities=28% Similarity=0.404 Sum_probs=151.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-cCc---------CCCC--Ceee------EEEECCCCccccc----
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-GRL---------HQGH--GLTG------TILTNNNKPTKHI---- 149 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~-G~~---------~~~~--~~~G------~i~~~g~~~~~~~---- 149 (679)
..|+|||++|++||+++|+|+||||||||+++|. |.+ .++. ...| .|.+++.+.....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 3699999999999999999999999999999853 211 1211 1233 5778876542100
Q ss_pred -------------------cCcEEEEecCCCCC----------------------C------------------------
Q 005754 150 -------------------SKRTGFVTQDDILY----------------------P------------------------ 164 (679)
Q Consensus 150 -------------------~~~i~yv~Q~~~l~----------------------~------------------------ 164 (679)
.+..||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 12357777643221 1
Q ss_pred --------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 165 --------HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 165 --------~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
.+||.|++.|... . . ..+++.++|+.+||.. ..+. .+..|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTC-----CGGGCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccC-----chhhCCHHHHHHHHHHHHHhcC
Confidence 4678888876421 1 1 1234568899999976 3443 4557999999999999999986
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 236 P---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
| ++|||||||+|||+.++..+++.|++++++|.|||+++|++. . ...||+|++| ++|++++.|+++++.
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 5 999999999999999999999999999988999999999964 3 4789999999 689999999998864
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1e-29 Score=298.77 Aligned_cols=197 Identities=29% Similarity=0.385 Sum_probs=148.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HhcCcC-------CC---------------CCeee-------EEEECC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNV-LAGRLH-------QG---------------HGLTG-------TILTNN 142 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~-L~G~~~-------~~---------------~~~~G-------~i~~~g 142 (679)
+|+|||++|++||+++|+|+||||||||++. |+|.+. ++ ....| .+.+++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 776432 10 01356 688887
Q ss_pred CCcccccc-----------------------C----------------------cEEEEecCCCCCC-------------
Q 005754 143 NKPTKHIS-----------------------K----------------------RTGFVTQDDILYP------------- 164 (679)
Q Consensus 143 ~~~~~~~~-----------------------~----------------------~i~yv~Q~~~l~~------------- 164 (679)
.+.....+ + ..|++..+..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 65421110 1 1222221111222
Q ss_pred -----------C--------CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHH
Q 005754 165 -----------H--------LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 165 -----------~--------lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerq 224 (679)
. +|+.|++.|.. . . ...+++.++|+.+||... .+ +.+..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~--~~~~~~~~~L~~~gL~~~~l~-----~~~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-E--SAIFRALDTLREVGLGYLRLG-----QPATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-S--HHHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-c--hHHHHHHHHHHHcCCCccccc-----CCcccCCHHHHH
Confidence 2 34555544421 1 1 123467899999999863 23 345679999999
Q ss_pred HHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCe
Q 005754 225 RVSIAHEMLIN---PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGR 295 (679)
Q Consensus 225 Rv~IA~aL~~~---P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~ 295 (679)
||+||++|+.+ |+||||||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.||+|++| ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 6999999999999999999999999999988999999999964 45 889999999 6899
Q ss_pred EEEecChhhH
Q 005754 296 CLYFGKGSEA 305 (679)
Q Consensus 296 iv~~G~~~~~ 305 (679)
+++.|+++++
T Consensus 816 Iv~~g~~~el 825 (842)
T 2vf7_A 816 LVAQGTPAEV 825 (842)
T ss_dssp EEEEECHHHH
T ss_pred EEEEcCHHHH
Confidence 9999999876
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.9e-29 Score=297.88 Aligned_cols=200 Identities=26% Similarity=0.391 Sum_probs=149.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-c----CcCC---CCC----eee------EEEECCCCcccc-----
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-G----RLHQ---GHG----LTG------TILTNNNKPTKH----- 148 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~-G----~~~~---~~~----~~G------~i~~~g~~~~~~----- 148 (679)
.+|+|||++|++||+++|+|+||||||||+++|. | .+.+ ..+ ..| .+.+++.+....
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~p 735 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNP 735 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccch
Confidence 3699999999999999999999999999999853 2 1211 111 112 355665543210
Q ss_pred ------------------ccCcEEEEecCCCC----------------------CC------------------------
Q 005754 149 ------------------ISKRTGFVTQDDIL----------------------YP------------------------ 164 (679)
Q Consensus 149 ------------------~~~~i~yv~Q~~~l----------------------~~------------------------ 164 (679)
..+..||++|...+ ++
T Consensus 736 aty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 815 (993)
T 2ygr_A 736 ATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYK 815 (993)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhcc
Confidence 01235666664321 11
Q ss_pred --------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 165 --------HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 165 --------~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
.+||.|++.|... . . ..+++.++|+.+||.. ..+. .+..|||||||||+||++|+.+
T Consensus 816 g~si~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~lgL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~ 881 (993)
T 2ygr_A 816 GKTVSEVLDMSIEEAAEFFEP------I-A--GVHRYLRTLVDVGLGYVRLGQ-----PAPTLSGGEAQRVKLASELQKR 881 (993)
T ss_dssp TBCHHHHHSSBHHHHHHHSTT------C-H--HHHHHHHHHHHTTGGGSBTTC-----CGGGSCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHhhccHHHHHHHhhc------c-h--HHHHHHHHHHHcCCCcccccC-----ccccCCHHHHHHHHHHHHHHhC
Confidence 3577777776321 1 1 1234568899999975 3333 4557999999999999999986
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 236 P---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
| ++|||||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.||+|++| ++|++++.|+++++.
T Consensus 882 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 882 STGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 5 999999999999999999999999999988999999999964 34 789999999 689999999998875
Q ss_pred H
Q 005754 307 S 307 (679)
Q Consensus 307 ~ 307 (679)
+
T Consensus 960 ~ 960 (993)
T 2ygr_A 960 A 960 (993)
T ss_dssp H
T ss_pred h
Confidence 3
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=7.9e-28 Score=264.26 Aligned_cols=206 Identities=17% Similarity=0.190 Sum_probs=147.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-----------------------------------CCe
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-----------------------------------HGL 134 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-----------------------------------~~~ 134 (679)
+..+++++|+++++| +++|+|||||||||||++|.++..+. ...
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~ 125 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG 125 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence 345789999999999 99999999999999999997765421 012
Q ss_pred eeEEEECCCCccc----cc-cCcEEEEecCCCCCCCCCHHHHHHHHhhhcC-----------------------CCCC--
Q 005754 135 TGTILTNNNKPTK----HI-SKRTGFVTQDDILYPHLTVRETLVFCSLLRL-----------------------PRTL-- 184 (679)
Q Consensus 135 ~G~i~~~g~~~~~----~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----------------------~~~~-- 184 (679)
.|.+.+||.+... .+ +..+++++|++.++.. +..+...|...... ....
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~ 204 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESS 204 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5789999987542 22 3348999999876543 55555444221100 0000
Q ss_pred --C------------------------------HHHHHHHHHHHHHHcCCCcccc----------------c---cccC-
Q 005754 185 --S------------------------------TKEKTSIAEAVMAELGLTKCEN----------------T---IIGN- 212 (679)
Q Consensus 185 --~------------------------------~~~~~~~v~~~l~~lgL~~~~~----------------~---~vg~- 212 (679)
. .....+.+++.++.+++.+..- . .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0 0011233455666666654100 0 0110
Q ss_pred -----ccCcc-cCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 213 -----SFIRG-ISGGERKRVSIAHEMLINP--SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 213 -----~~~~~-LSgGerqRv~IA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++ ++...
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~ 361 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAAR 361 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhh
Confidence 11222 6999999999999999999 9999999999999999999999999998 599999999997 35689
Q ss_pred CCeEEEE----eCCeEEEec
Q 005754 285 FDKVLVL----SEGRCLYFG 300 (679)
Q Consensus 285 ~D~v~lL----~~G~iv~~G 300 (679)
||++++| ++|+++...
T Consensus 362 ~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 362 AHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEEEeccCCceEEEE
Confidence 9999999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-31 Score=297.45 Aligned_cols=185 Identities=12% Similarity=0.083 Sum_probs=147.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeee-E-EEECCCCccccccCcEEEEecCCC---CCCCCCHH
Q 005754 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTG-T-ILTNNNKPTKHISKRTGFVTQDDI---LYPHLTVR 169 (679)
Q Consensus 95 ~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G-~-i~~~g~~~~~~~~~~i~yv~Q~~~---l~~~lTV~ 169 (679)
.++|+++++|++++|+||||||||||+|+|+|+.++ .+| + |.++|. .++.++|+||+.. +.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCC-----ccCCeeeeccchhhcccccccchh
Confidence 379999999999999999999999999999999875 478 8 999883 3677999999984 45567999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH--HhhCCCe----EEEeC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE--MLINPSL----LILDE 243 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a--L~~~P~l----llLDE 243 (679)
||+ |+....... . ..+++.++++.+|+.+..+ +..|||||||||+||++ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 643321110 0 1233556777888876543 45799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc--H---HHHHhCCe-----EEEEe-CCeEEEecChhhH
Q 005754 244 -PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS--S---RVYQMFDK-----VLVLS-EGRCLYFGKGSEA 305 (679)
Q Consensus 244 -PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~--~---~i~~~~D~-----v~lL~-~G~iv~~G~~~~~ 305 (679)
||++||+. ...+.+++++ .|.|+|+++|+.. . ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 5555555544 3789999999976 1 46689999 99999 99999 8988655
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=2.7e-25 Score=240.64 Aligned_cols=84 Identities=31% Similarity=0.401 Sum_probs=77.5
Q ss_pred ccCcccCHHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCC
Q 005754 213 SFIRGISGGERKRVSIAHEML------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286 (679)
Q Consensus 213 ~~~~~LSgGerqRv~IA~aL~------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D 286 (679)
+.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||++||++. ..+.+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 456789999999999999999 699999999999999999999999999999888999999999974 468899
Q ss_pred eEEEEeCCeEEE
Q 005754 287 KVLVLSEGRCLY 298 (679)
Q Consensus 287 ~v~lL~~G~iv~ 298 (679)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=4.4e-28 Score=242.34 Aligned_cols=146 Identities=20% Similarity=0.298 Sum_probs=102.9
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC-CCccccccCcEEEEecCCCCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-NKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g-~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+.|+++.+|+|+ ++||+++|+||||||||||||+|+|+ +|+.| +|.... .......++.+||++|++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G---~I~~~~~~~~~~~~~~~ig~v~q~~---- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK---QVSRIILTRPAVEAGEKLGFLPGTL---- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT---SCSEEEEEECSCCTTCCCCSSCC------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC---eeeeEEecCCchhhhcceEEecCCH----
Confidence 456778899996 89999999999999999999999999 77543 331100 011123467799999975
Q ss_pred CCCHHHHH-HHHh----hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 165 HLTVRETL-VFCS----LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 165 ~lTV~E~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+||+ .+.. .+. .... .++++++++. | + ||||||+|||||+.+|++|
T Consensus 76 ----~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~ll 126 (208)
T 3b85_A 76 ----NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFV 126 (208)
T ss_dssp --------CTTTHHHHHHHT--TTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEE
T ss_pred ----HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEE
Confidence 4444 2211 111 0000 1234555543 2 2 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
||||||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 127 lLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 127 ILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp EECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred EEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999999 899999999998 6789999 999964
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=4.2e-24 Score=227.47 Aligned_cols=89 Identities=21% Similarity=0.229 Sum_probs=73.9
Q ss_pred cCcccCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeE-
Q 005754 214 FIRGISGGERKRVSIAHEML----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKV- 288 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v- 288 (679)
.+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|++++ +|.|||++||++. +.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEE
Confidence 45689999999999999997 5789999999999999999999999999985 4899999999953 67899987
Q ss_pred -EEEeCCeE-EEecChhhH
Q 005754 289 -LVLSEGRC-LYFGKGSEA 305 (679)
Q Consensus 289 -~lL~~G~i-v~~G~~~~~ 305 (679)
++|.+|+. +.....+++
T Consensus 293 ~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEEESSSCEEEEECCC---
T ss_pred EEEEeCCEEEEEEEEcchh
Confidence 77887754 444555443
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=7.4e-25 Score=211.97 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=100.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCC-CCCCHHHHHHH
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY-PHLTVRETLVF 174 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~-~~lTV~E~l~~ 174 (679)
||||++++||+++|+||||||||||+|++.+-.. .+++ ... .|+++|++... ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~---------~~~~----d~~---~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE---------VISS----DFC---RGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG---------EEEH----HHH---HHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe---------EEcc----HHH---HHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999998653211 1111 011 25666654210 0001111111
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH---
Q 005754 175 CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST--- 251 (679)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~--- 251 (679)
...+ .....|.....+. ....|||||||++||++++.+|++++|||||++||+.
T Consensus 64 ----------------~~~~-~~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVS-KRLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHH-HHHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHH-HHHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111 1223354433322 2346999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 252 -------------AAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 252 -------------~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
....+.+.|++++++|.|+|++||++.
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 669999999999877999999999964
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=1.6e-26 Score=252.84 Aligned_cols=170 Identities=18% Similarity=0.220 Sum_probs=133.4
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccccc
Q 005754 91 RTILNGITGMVSPGE--------------------ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS 150 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge--------------------~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~ 150 (679)
+.+|++||+++++|+ +++|+||||||||||+|+|+|+.+|+ +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e
Confidence 568999999999999 99999999999999999999998864 577777775432 1
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHH--HHHHHHH
Q 005754 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGG--ERKRVSI 228 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG--erqRv~I 228 (679)
.++++|++ .++.+|+.|++.+.. + +.+++++++.+++.+... . +. |||| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~-~-----~~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDF-F-----II-ISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSE-E-----EE-EESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCC-e-----EE-eCCCCccHHHHHH
Confidence 27899985 577889999875431 1 124678899999876422 1 22 9999 9999999
Q ss_pred HHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEeCCccH-HHHHhCCeE
Q 005754 229 AHEMLI----------NPSLLILDEPTSGLDSTAAYRLVSTLGSLV-----QRG----KTIVTSMHQPSS-RVYQMFDKV 288 (679)
Q Consensus 229 A~aL~~----------~P~lllLDEPtsgLD~~~~~~i~~~L~~l~-----~~g----~tii~~tH~~~~-~i~~~~D~v 288 (679)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+... .+.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999985 333 678899998642 144444443
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=4.9e-24 Score=207.87 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=102.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTL 184 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 184 (679)
.++|+||||||||||+|+|+|++.. ...|... .... ...++.+||++|+. ++.+++ + +.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhh------
Confidence 5899999999999999999998752 2334321 1111 13456799999975 222332 1 110
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH-----HhhCCCeEEEeC--CCCCCCHHHHHHHH
Q 005754 185 STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE-----MLINPSLLILDE--PTSGLDSTAAYRLV 257 (679)
Q Consensus 185 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a-----L~~~P~lllLDE--PtsgLD~~~~~~i~ 257 (679)
+... +... ++.+..||||||||++||++ |+.+|++++||| ||++||+.....+.
T Consensus 63 ----------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 63 ----------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp ----------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred ----------------cCCc--cccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 0000 0111 23456799999999999996 999999999999 99999999999999
Q ss_pred HHHHHHHhCCcEEEEEeC--CccHHHHHhCCeEEEEeCCeEEE
Q 005754 258 STLGSLVQRGKTIVTSMH--QPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 258 ~~L~~l~~~g~tii~~tH--~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
+.|++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 88875 4777888886 234567788887 4566655
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.88 E-value=7.3e-27 Score=245.78 Aligned_cols=168 Identities=17% Similarity=0.192 Sum_probs=128.3
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~ 159 (679)
..+++++.|+ +.+|+|+|++|++|++++|+||||||||||+++|+|++ +|+| ++|++|+
T Consensus 103 ~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I--------------~~~v~q~ 161 (305)
T 2v9p_A 103 NYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV--------------LSFANHK 161 (305)
T ss_dssp HHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE--------------ECGGGTT
T ss_pred EEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE--------------EEEecCc
Confidence 4567777787 67999999999999999999999999999999999987 3566 3456777
Q ss_pred CCCCCCCCHHH-HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 160 DILYPHLTVRE-TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 160 ~~l~~~lTV~E-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.+++. |++| |+.+... .+. .+.+.++.+ |.+..| +..|||||||| ||||+.+|+|
T Consensus 162 ~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~i 218 (305)
T 2v9p_A 162 SHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPL 218 (305)
T ss_dssp SGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCE
T ss_pred cccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCE
Confidence 777664 7776 7655311 111 344555554 444333 34799999999 9999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHc
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~ 312 (679)
|| ||+||+.++..+.. .+|++. ..+.+|+| +|++|++++.|+++++..+|.++
T Consensus 219 Ll----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 219 LV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp EE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred EE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 99 99999999988862 188875 46789999 99999999999999986666543
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=1.1e-26 Score=231.47 Aligned_cols=183 Identities=16% Similarity=0.155 Sum_probs=120.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+.+.+++| .++++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+.....++.++|++|++.+++.+|+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 34567888 79999999999999999999999999998752 22222222222222235679999999888888888
Q ss_pred HHHHHHHhhhcC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 169 RETLVFCSLLRL---PRTLSTKEKTSIAEAV------MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 169 ~E~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.|++........ ....++++.++++++. ++.+|+.+.++ ..++.|| +|+.+|+++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~lS-----------~l~~~p~~~ 145 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKK-----TMPEAVT-----------VFLAPPSWQ 145 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHH-----HCTTSEE-----------EEEECSCHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHH-----hcCCcEE-----------EEEECCCHH
Confidence 877642110000 0012344455555554 44455543332 2344566 899999999
Q ss_pred EEeCCCCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 240 ILDEPTSGL----DSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 240 lLDEPtsgL----D~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
+|||||+|+ |+..+..+.+.++++.+ .|.|+|++||++. ++.++||++++|.+
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 999999998 78899999999999975 5899999999965 68999999999853
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.86 E-value=3.2e-23 Score=218.55 Aligned_cols=174 Identities=16% Similarity=0.143 Sum_probs=133.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cc--cCcEEEEecCCC-
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HI--SKRTGFVTQDDI- 161 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~--~~~i~yv~Q~~~- 161 (679)
.++++|+++++|++++|+||||||||||++.|+|+++++ .|+|.++|.+..+ .+ ++.++|++|++.
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~ 165 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 165 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--C
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCc
Confidence 346789999999999999999999999999999998763 5889998876532 11 346999999988
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC--eE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS--LL 239 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~--ll 239 (679)
++|.+||+|++.++.... . ...+++.+|+.+..+.. +++|| |||++||++|+.+|+ +|
T Consensus 166 ~~~~~~v~e~l~~~~~~~----~--------d~~lldt~gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lL 225 (302)
T 3b9q_A 166 AKAATVLSKAVKRGKEEG----Y--------DVVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILL 225 (302)
T ss_dssp CCHHHHHHHHHHHHHHTT----C--------SEEEECCCCCSSCCHHH-----HHHHH---HHHHHHHTTSTTCCSEEEE
T ss_pred cCHHHHHHHHHHHHHHcC----C--------cchHHhcCCCCcchhHH-----HHHHH---HHHHHHHHhhccCCCeeEE
Confidence 889999999998753211 0 01345677877655444 44699 999999999999999 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCcc--------HHHHHhCCeEEEEeCCeE
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPS--------SRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~--------~~i~~~~D~v~lL~~G~i 296 (679)
+|| ||+|||+.+. ++++.+ .|.|+|++||... +.+....+.|.++..|+.
T Consensus 226 vLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 226 VLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999 9999999854 345553 5899999999432 223456678888888864
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.85 E-value=2.4e-23 Score=230.13 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=150.9
Q ss_pred CccCCCCcccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCC---cc------
Q 005754 77 SSTDDQGSTAKIQ-ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK---PT------ 146 (679)
Q Consensus 77 ~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~---~~------ 146 (679)
.....+++++.|+ +..+|+++ +.+.+||+++|+|||||||||||++|+|+.++ ..|.|.++|+. ..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~---~~G~i~~~G~r~~ev~~~~~~~ 205 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA---DVIVVGLIGERGREVKDFIENI 205 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC---SEEEEEEESCCHHHHHHHHHTT
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEeceecHHHHHHHHhh
Confidence 3466778888887 67899999 99999999999999999999999999999876 37999999983 22
Q ss_pred ---ccccCcEEEEecC-CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH
Q 005754 147 ---KHISKRTGFVTQD-DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE 222 (679)
Q Consensus 147 ---~~~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 222 (679)
..+++.++|++|+ +.+++.+||.+|+.+.+..... -+ .+.. ..+ .....+|+||
T Consensus 206 ~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~------------------~~-~~v~-~~l--d~l~~lS~g~ 263 (438)
T 2dpy_A 206 LGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD------------------RG-QHVL-LIM--DSLTRYAMAQ 263 (438)
T ss_dssp THHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT------------------TT-CEEE-EEE--ECHHHHHHHH
T ss_pred ccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh------------------CC-CCHH-HHH--HhHHHHHHHH
Confidence 1246789999995 5567788999999875432100 00 0100 001 1145699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ---R-GK-----TIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 223 rqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
|||+|| +.+|++ |+|||+.....+.+.++++.+ + |+ ||++++||.+ ..++|++++|.+
T Consensus 264 -qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d 330 (438)
T 2dpy_A 264 -REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD 330 (438)
T ss_dssp -HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS
T ss_pred -HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC
Confidence 999999 889988 999999999999999999876 3 74 9999999986 467999999999
Q ss_pred CeEEEecChhhH
Q 005754 294 GRCLYFGKGSEA 305 (679)
Q Consensus 294 G~iv~~G~~~~~ 305 (679)
|+++..|++.+.
T Consensus 331 G~Ivl~~~~~~~ 342 (438)
T 2dpy_A 331 GHIVLSRRLAEA 342 (438)
T ss_dssp EEEEECHHHHHT
T ss_pred cEEEEeCCHHHc
Confidence 999999987664
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=8.6e-21 Score=223.20 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 005754 189 KTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINP--SLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265 (679)
Q Consensus 189 ~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~~L~~l~~ 265 (679)
..++++ .++.+||.+. .++ .+.+|||||||||.||++|..+| ++|+|||||+|||+...+.+.++|++|++
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~ 429 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR 429 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH
Confidence 344555 5788999764 343 45579999999999999999999 59999999999999999999999999998
Q ss_pred CCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 266 RGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 266 ~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
.|.|||+++|++. +.+.+|+|++| .+|++++.|+++++.
T Consensus 430 ~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 430 GGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred cCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8999999999963 56789999999 789999999988753
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.83 E-value=1.1e-20 Score=203.44 Aligned_cols=86 Identities=22% Similarity=0.169 Sum_probs=77.6
Q ss_pred CccCc-ccCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHH
Q 005754 212 NSFIR-GISGGERKRVSIAHEML---------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRV 281 (679)
Q Consensus 212 ~~~~~-~LSgGerqRv~IA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i 281 (679)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 44566 79999999999999999 8999999999999999999999999998874 799999994 32
Q ss_pred HHhCCeEEEEeCCeEEEecChhhH
Q 005754 282 YQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 282 ~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
No 78
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=3.4e-20 Score=198.68 Aligned_cols=78 Identities=28% Similarity=0.400 Sum_probs=70.4
Q ss_pred ccCcccCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCC
Q 005754 213 SFIRGISGGERK------RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286 (679)
Q Consensus 213 ~~~~~LSgGerq------Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D 286 (679)
+.++.||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++ ++...||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 456789999999 66777888889999999999999999999999999999987789999999995 3688999
Q ss_pred eEEEEe
Q 005754 287 KVLVLS 292 (679)
Q Consensus 287 ~v~lL~ 292 (679)
++++|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.83 E-value=6e-22 Score=213.00 Aligned_cols=172 Identities=16% Similarity=0.152 Sum_probs=132.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cc--cCcEEEEecCCC-CC
Q 005754 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HI--SKRTGFVTQDDI-LY 163 (679)
Q Consensus 95 ~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~--~~~i~yv~Q~~~-l~ 163 (679)
+++|+++++|++++|+||||||||||++.|+|++++. .|+|.++|.+..+ .+ ++.++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999998763 5889998876532 11 346999999988 88
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC--eEEE
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS--LLIL 241 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~--lllL 241 (679)
|.+|++|++.++.... .. ..+++.+|+.+..+.. +++|| |||++|||+|+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHH-----HHHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhH-----HHHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 9999999998754211 00 1245667877655443 44699 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCcc--------HHHHHhCCeEEEEeCCeE
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPS--------SRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~--------~~i~~~~D~v~lL~~G~i 296 (679)
| ||+|||+.+.. +++.+ .|.|+|++||... +......+.|..+..|+.
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999998653 44543 5899999999421 223456678888888764
No 80
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=4.3e-23 Score=214.28 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=95.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTL 184 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 184 (679)
.++|+||||||||||+|+|+|+..| .+|++.++|.+... ..++.++|++|++.+++.+||.||+.|+..... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~---~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS---RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--EN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HH
Confidence 4799999999999999999999876 37899999876543 345689999999999999999999988654321 11
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005754 185 STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264 (679)
Q Consensus 185 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~ 264 (679)
. .+.+.+.++ .+..+. ....||||||||++|||+++. ++++|||++|||+.. .+.++++.
T Consensus 79 ~----~~~i~~~~~----~~~~~~-----~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 C----WEPIEKYIN----EQYEKF-----LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp C----SHHHHHHHH----HHHHHH-----HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred H----HHHHHHHHH----HHHHhh-----hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 1 112222222 122222 234799999999999999876 999999999999987 55666666
Q ss_pred hCCcEEEEEeCCc
Q 005754 265 QRGKTIVTSMHQP 277 (679)
Q Consensus 265 ~~g~tii~~tH~~ 277 (679)
+. .+||+++|..
T Consensus 139 ~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 KV-VNIIPVIAKA 150 (270)
T ss_dssp TT-SEEEEEETTG
T ss_pred hc-CcEEEEEecc
Confidence 66 8999999874
No 81
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.82 E-value=6.5e-22 Score=211.21 Aligned_cols=133 Identities=19% Similarity=0.256 Sum_probs=107.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+++++++|+.+++|++++|+||||||||||||+|+|+++|+ +|.|.++|.+... ..++.+++++
T Consensus 158 ~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~----------- 223 (330)
T 2pt7_A 158 EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF----------- 223 (330)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-----------
T ss_pred HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-----------
Confidence 34899999999999999999999999999999999999863 6899998864211 1223334332
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
+ |||+||++||++|..+|++|++||||+
T Consensus 224 ------------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-- 251 (330)
T 2pt7_A 224 ------------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-- 251 (330)
T ss_dssp ------------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS--
T ss_pred ------------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh--
Confidence 1 899999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 249 DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
.++.+.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+.
T Consensus 252 -----~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 -----SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp -----THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred -----HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2356777777654568999999976 5788999999988753
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.82 E-value=1.9e-24 Score=217.45 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=99.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~~l~~~ 165 (679)
..-|+||||++++|++++|+||||||||||+|+|+|+. | |++.+ |.+.. ...++.++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 45799999999999999999999999999999999987 4 45666 54432 1234679999998766654
Q ss_pred CC-HHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHH-----HHHHhhCCCe
Q 005754 166 LT-VRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSI-----AHEMLINPSL 238 (679)
Q Consensus 166 lT-V~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I-----A~aL~~~P~l 238 (679)
++ +.+++.+. ..... ...+. +.++++++...+. .+. ..+|||||||++| +++|+.+|++
T Consensus 83 ~~~~~~~l~~~-~~~~~~~g~~~----~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYANNFYGTLK----SEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp HHHTTCEEEEE-EETTEEEEEEH----HHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred hhhccchhhhh-hcccccCCCcH----HHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 33 11121110 00000 01111 2355666543321 111 3699999999999 8999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQ 265 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~ 265 (679)
++|||||+++|..+...+.+.|+++.+
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999887754
No 83
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.81 E-value=1e-23 Score=223.33 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=98.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRL 180 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 180 (679)
+++|++++|+||||||||||+++|+|++++.. |. +.+++|+|++.+++. |++||+.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~---------G~-------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWD---------HH-------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTST---------TC-------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccC---------CC-------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 79999999999999999999999999987631 21 468999999999988 999998542211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 181 PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 181 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
..+.....+.+.+.|+.++ ....+.. +..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1222233456778888887 4433333 347999999999999999999999999999999986
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.81 E-value=5e-21 Score=200.80 Aligned_cols=184 Identities=15% Similarity=0.126 Sum_probs=120.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeee-EEEE-CCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTG-TILT-NNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G-~i~~-~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
..+|+++++.+++|++++|+||||||||||++.|+|...+. .| .+.+ ++......+++++..+.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999988653 24 4433 333222233333333333321 123
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH-HHHHHHHHHHhhCCCeEEEeCCCC-
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE-RKRVSIAHEMLINPSLLILDEPTS- 246 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~IA~aL~~~P~lllLDEPts- 246 (679)
.+++.... + +.++..+.++++++..++. +. ..+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~------i~-~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I------ENGKFDQWFDELFGNDTFH------LY-DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H------HHTHHHHHHHHHHSSSCEE------EE-CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C------CHHHHHHHHHHHhccCCEE------EE-CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 33443221 0 1222333445444322221 11 1123588898 66776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHhC-CcEEEEEeCCcc-H--------------------HHHHhCCeEEEEeCCeE
Q 005754 247 --G---LDS-TAAYRLVSTLGSLVQR-GKTIVTSMHQPS-S--------------------RVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 247 --g---LD~-~~~~~i~~~L~~l~~~-g~tii~~tH~~~-~--------------------~i~~~~D~v~lL~~G~i 296 (679)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 6778899999999865 999999999951 2 57789999999998874
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.81 E-value=1.6e-21 Score=199.23 Aligned_cols=180 Identities=9% Similarity=0.077 Sum_probs=110.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
.+++++|+|+||++++|+++||+||||||||||+++|+|++. .+.++ ..++.++|++|++ +++.+|
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc------ccCCceEEEeCCc-CccccC
Confidence 356789999999999999999999999999999999999652 12222 2467799999995 777899
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
+.|++.+...... ...+.....+.+.+.++.+ .+..+. .+..+|+||+||+.+ ++++.+|+++++|||...
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~l--~~~~~~-----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~ 145 (245)
T 2jeo_A 75 AEQKAKALKGQYN-FDHPDAFDNDLMHRTLKNI--VEGKTV-----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVF 145 (245)
T ss_dssp HHHHHHHHTTCCC-TTSGGGBCHHHHHHHHHHH--HTTCCE-----EECCEETTTTEECSS-CEEECCCSEEEEECTTTT
T ss_pred HhHhhhhhccCCC-CCCcccccHHHHHHHHHHH--HCCCCe-----ecccccccccCccCc-eEEecCCCEEEEeCcccc
Confidence 9999876432211 0001111123344455543 233333 345799999999988 588889999999999988
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHH-HhCCeEEEEeCCeEEEecChhhHHHHH
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVY-QMFDKVLVLSEGRCLYFGKGSEAMSYF 309 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~-~~~D~v~lL~~G~iv~~G~~~~~~~~f 309 (679)
.|.. +.++ .+.+|++++|+.. .+. .+++++ ++|+ +.+++.+.+
T Consensus 146 ~~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 146 YSQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp TSHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHH
T ss_pred ccHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 8864 2222 3789999999733 343 334434 5564 566766544
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=3.1e-20 Score=220.24 Aligned_cols=138 Identities=25% Similarity=0.417 Sum_probs=108.4
Q ss_pred CCCCCHHHHHHHHhhhcCCCCC-C-H---HHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 163 YPHLTVRETLVFCSLLRLPRTL-S-T---KEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~-~-~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+..+||.|++.|.....+.... . . ....+...+.|..+||... .+ +.+.+|||||||||+||++|+++|
T Consensus 409 ~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~-----r~~~~LSGGe~QRv~LAraL~~~p 483 (916)
T 3pih_A 409 FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLS-----RSATTLSGGESQRIRLATQIGSGL 483 (916)
T ss_dssp HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTT-----SBGGGCCHHHHHHHHHHHHHHTTC
T ss_pred hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccccc-----CCcccCCHHHHHHHHHHHHHhhCC
Confidence 3457888998875543322111 0 0 1112234567888999754 34 345579999999999999999988
Q ss_pred C--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHHH
Q 005754 237 S--LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAMS 307 (679)
Q Consensus 237 ~--lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 307 (679)
+ +|||||||+|||+.....+++.|++++++|.|||+++||+. ....||+|++| ++|++++.|+++++.+
T Consensus 484 ~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 484 TGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 7 99999999999999999999999999888999999999963 34569999999 8999999999988753
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.80 E-value=1.2e-19 Score=205.29 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=71.5
Q ss_pred cCccc-CHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEE
Q 005754 214 FIRGI-SGGERKRVSIAHEMLINP--SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV 290 (679)
Q Consensus 214 ~~~~L-SgGerqRv~IA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~l 290 (679)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||++||++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 35567 999999999999999999 99999999999999999999999999987 899999999964 4567999999
Q ss_pred EeCC
Q 005754 291 LSEG 294 (679)
Q Consensus 291 L~~G 294 (679)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=2.5e-20 Score=200.05 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=138.1
Q ss_pred ccCCCCcccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---------
Q 005754 78 STDDQGSTAKIQ-ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------- 147 (679)
Q Consensus 78 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------- 147 (679)
....+++++.|+ +..+|+++ +.|.+||+++|+||||||||||+++|+|..+++ .|.+.+.|++..+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSC
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhh
Confidence 445667778887 67899999 999999999999999999999999999998763 6888888865211
Q ss_pred --cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH
Q 005754 148 --HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR 225 (679)
Q Consensus 148 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 225 (679)
.+++.+.+++|.+. +..+.+.-... .....+.....+ .+..+--..+..||+|| ||
T Consensus 121 ~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~ 178 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RD 178 (347)
T ss_dssp HHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HH
T ss_pred hhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HH
Confidence 13455788887542 23332221100 000111111111 11111012356799999 89
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 226 VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ--RGK-----TIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 226 v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||.. ..+||++++|.+|+++.
T Consensus 179 v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 179 VGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp HHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEB
T ss_pred HHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEE
Confidence 9999 688887 999999999999999999974 487 9999999976 46799999999999999
Q ss_pred ecChhhH
Q 005754 299 FGKGSEA 305 (679)
Q Consensus 299 ~G~~~~~ 305 (679)
.|+..+.
T Consensus 247 ~~~l~~~ 253 (347)
T 2obl_A 247 TRELAEE 253 (347)
T ss_dssp CHHHHTT
T ss_pred eCCHHHc
Confidence 9987764
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=1.6e-19 Score=204.58 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=118.5
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005754 98 TGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL 177 (679)
Q Consensus 98 s~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 177 (679)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~-------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE-------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC-------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC-------------CEEEEEEeCCH----HHHHHHHH----
Confidence 4589999999999999999999999999987642 21 12455666531 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH-----H
Q 005754 178 LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST-----A 252 (679)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~-----~ 252 (679)
+.. .+. ++ +...|+.+..+ ..+..|||||+||+.+|+++..+|+++++| ||+|||.. .
T Consensus 330 -~~g--~~~-------~~-~~~~g~~~~~~-----~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MDF-------EE-MERQNLLKIVC-----AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CCH-------HH-HHHTTSEEECC-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CCH-------HH-HHhCCCEEEEE-----eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 121 12 22345544333 345679999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCcc---------HHHHHhCCeEEEEeCCe
Q 005754 253 AYRLVSTLGSLVQRGKTIVTSMHQPS---------SRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 253 ~~~i~~~L~~l~~~g~tii~~tH~~~---------~~i~~~~D~v~lL~~G~ 295 (679)
+..+.++++.+++.|.|||+++|+.. ..+..++|+|++|++|+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999999988999999999971 34667899999999886
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.78 E-value=1.9e-20 Score=225.34 Aligned_cols=165 Identities=19% Similarity=0.121 Sum_probs=116.6
Q ss_pred ccccc-cccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEE-
Q 005754 84 STAKI-QERTILNGITGMVSP-------GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTG- 154 (679)
Q Consensus 84 ~~~~~-~~~~iL~~vs~~i~~-------Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~- 154 (679)
+.+.+ +++.+++|+++.+++ |++++|+||||||||||||+| |++.+ ..++|
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~ 820 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGC 820 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTC
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeE
Confidence 34444 456799999999987 999999999999999999999 87652 12345
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
||||+.. .+||.|++.. + +|+.+.... ....+|+++++ +++|+++++
T Consensus 821 ~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~ 867 (1022)
T 2o8b_B 821 YVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHAT 867 (1022)
T ss_dssp CEESSEE---EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCC
T ss_pred EeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCC
Confidence 9999753 4566555421 1 121111110 12357777665 999999999
Q ss_pred CCCeEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEE--EecChh
Q 005754 235 NPSLLILDEPTSGLDSTAA-YRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL--YFGKGS 303 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv--~~G~~~ 303 (679)
+|+++|||||++|+|+... ..+.++|+.++++ |.++|++||+.. .+...+|++.++ +|++. +.|+++
T Consensus 868 ~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 868 AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEEEEEC------
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCeEEEEEecCcc
Confidence 9999999999999999985 5578999999876 999999999964 467789998887 48887 455543
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=4.6e-22 Score=225.36 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=120.0
Q ss_pred ccccccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecC
Q 005754 86 AKIQERTILNGITG-MVSPGEILAILGPSGSGKSTMLNV--LAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQD 159 (679)
Q Consensus 86 ~~~~~~~iL~~vs~-~i~~Ge~~allGpnGsGKSTLL~~--L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~ 159 (679)
+-.++.++|++||+ .+++||+++|+||||||||||+++ ++|+.+|+ +|.|+++|.+... ..++.+||++|+
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAK 96 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHH
T ss_pred cccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHH
Confidence 33456789999999 999999999999999999999999 78988753 6899999987432 234578999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
....+ ++.+ ..... . +...++++.++|.+..+ +.++.|||| +|+++
T Consensus 97 ~~~~~------~l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~-----~~~~~LS~g-------------~~~~l 142 (525)
T 1tf7_A 97 LVDEG------KLFI---LDASP--D-----PEGQEVVGGFDLSALIE-----RINYAIQKY-------------RARRV 142 (525)
T ss_dssp HHHTT------SEEE---EECCC--C-----SSCCSCCSSHHHHHHHH-----HHHHHHHHH-------------TCSEE
T ss_pred hhccC------cEEE---EecCc--c-----cchhhhhcccCHHHHHH-----HHHHHHHHc-------------CCCEE
Confidence 54211 1110 00000 0 00011122222222111 112235554 58899
Q ss_pred EEeCCCC-----CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHH--------HHHhCCeEEEEeCC
Q 005754 240 ILDEPTS-----GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSR--------VYQMFDKVLVLSEG 294 (679)
Q Consensus 240 lLDEPts-----gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~--------i~~~~D~v~lL~~G 294 (679)
++||||+ +||+..+..+.++++++++.|+|||+++|++... ...+||+|++|++|
T Consensus 143 ilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 143 SIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp EEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred EECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 9999998 4699999999999999988899999999997642 34569999999983
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.78 E-value=1.1e-18 Score=205.91 Aligned_cols=135 Identities=26% Similarity=0.394 Sum_probs=109.9
Q ss_pred CCCCHHHHHHHHhhhcCCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 164 PHLTVRETLVFCSLLRLPRT---LST---KEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
..+||.|++.|...+.++.. ... ++..+++ +.|+.+||... .++ .+.+|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCC
Confidence 46899999999766643220 000 2334455 45889999753 444 45579999999999999999985
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 237 --SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 237 --~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
++|+|||||+|||+...+.+++.|++|++.|.|||+++|++. ....||+|++| .+|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999988999999999963 35689999999 789999999998753
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.76 E-value=4.4e-19 Score=211.23 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=111.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+++.+++|+++.+++|++++|+||||||||||||++++..-. ...| ...... ...++.+ +.
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~--aq~G------~~vpa~-~~~~~~~---d~------- 707 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM--AQIG------CFVPCE-SAEVSIV---DC------- 707 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH--HHHT------CCBSEE-EEEEECC---SE-------
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH--HhcC------Cccccc-cccchHH---HH-------
Confidence 346799999999999999999999999999999999432110 0000 000000 0001110 00
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH--hhCCCeEEEeCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM--LINPSLLILDEPTS 246 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL--~~~P~lllLDEPts 246 (679)
++..+|+.+ ...+++|+|+++++.+|++| +++|+++||||||+
T Consensus 708 ---------------------------i~~~ig~~d--------~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~ 752 (934)
T 3thx_A 708 ---------------------------ILARVGAGD--------SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGR 752 (934)
T ss_dssp ---------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSC
T ss_pred ---------------------------HHHhcCchh--------hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCC
Confidence 111112211 11235888888888888888 99999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 247 GLDSTAAYRL-VSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 247 gLD~~~~~~i-~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+.....+ ..+++.+++ .|.|+|++||+. ++..++|++..+.+|++...++.+++
T Consensus 753 GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 753 GTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 9999999888 677788876 499999999995 36789999999999999988876653
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=1.5e-18 Score=205.23 Aligned_cols=137 Identities=26% Similarity=0.340 Sum_probs=109.6
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLS------TKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
+..+||.|.+.|...+.++.... .++..+++ +.|+.+||... .+ +.+.+|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~-----r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLS-----RAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTT-----CBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccC-----CCcccCCHHHHHHHHHHHHHhhC
Confidence 45689999999855443221000 02334455 35788999753 34 34557999999999999999999
Q ss_pred --CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHHH
Q 005754 236 --PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAMS 307 (679)
Q Consensus 236 --P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 307 (679)
|++|+|||||+|||+...+.+.+.|++|++.|.|||+++|++. ....||+|++| .+|++++.|+++++.+
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 4899999999999999999999999999989999999999963 35689999999 6899999999988754
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.75 E-value=8.3e-20 Score=185.35 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=103.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHh--cCcCCCCCeeeEEEECCCCcccc---ccCcEEEEecCCCCCCCCCHHHHHHH
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLA--GRLHQGHGLTGTILTNNNKPTKH---ISKRTGFVTQDDILYPHLTVRETLVF 174 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~--G~~~~~~~~~G~i~~~g~~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~ 174 (679)
.+++|++++|+||||||||||+++|+ |...++ .|.+.+++...... ..+.+++++|+....+.+++.++...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 78999999999999999999999999 653332 34566666544322 23456777776544444454443321
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC-----
Q 005754 175 CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD----- 249 (679)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD----- 249 (679)
... ......... ....+.++..+......-..+|+++++||||++||
T Consensus 103 ~~~----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 103 VVG----------LPSEEKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred ccc----------cccccceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 100 000000000 01133445444444444468999999999999998
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCccHHH---------HHhC-CeEEEEe
Q 005754 250 STAAYRLVSTLGSLVQRGKTIVTSMHQPSSRV---------YQMF-DKVLVLS 292 (679)
Q Consensus 250 ~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i---------~~~~-D~v~lL~ 292 (679)
+..+..+.++++.++++|+|||+++|+... + ..+| |++++|+
T Consensus 155 ~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 677777999999998889999999999754 4 5788 9999995
No 96
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=2.3e-18 Score=162.62 Aligned_cols=83 Identities=28% Similarity=0.392 Sum_probs=74.2
Q ss_pred CccCcccCHHHHHHHHHH------HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC
Q 005754 212 NSFIRGISGGERKRVSIA------HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 212 ~~~~~~LSgGerqRv~IA------~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~ 285 (679)
++.+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 456778999999999886 899999999999999999999999999999999987799999999996 367899
Q ss_pred CeEEEEe--CCeE
Q 005754 286 DKVLVLS--EGRC 296 (679)
Q Consensus 286 D~v~lL~--~G~i 296 (679)
|++++|+ +|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 9999994 5643
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.74 E-value=4.4e-19 Score=183.17 Aligned_cols=133 Identities=15% Similarity=0.274 Sum_probs=99.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
++|+++| +++|++++|+|||||||||||++|+|.++|+ .+|+|.++|.+.....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 5899999 9999999999999999999999999998752 16889888765421111112222221
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
.+|+.. ..+ |++||++|..+|+++++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 123321 123 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
+...++ +. ++.|.+|++++|+.+ +...+||++.|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 876544 33 356999999999965 5688999988854
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.73 E-value=3.9e-19 Score=178.13 Aligned_cols=154 Identities=20% Similarity=0.236 Sum_probs=96.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--C--eeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHH
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--G--LTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVF 174 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~--~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 174 (679)
+-+++||+++|+||||||||||+++|+|...+.. + ..+.+++++.... ..+.+++++|+..+.+. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 4689999999999999999999999999544311 1 2345666654310 01223344444333322 33333221
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH-HHHHHHHHHHhh-------CCCeEEEeCCCC
Q 005754 175 CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE-RKRVSIAHEMLI-------NPSLLILDEPTS 246 (679)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~IA~aL~~-------~P~lllLDEPts 246 (679)
. ...++++ ++++..+.+++. +|+++++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 1123333 333555555555 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHh-CCcEEEEEeCCcc---HHHHHhCCeEEEEeCCe
Q 005754 247 GLDST-------A-----AYRLVSTLGSLVQ-RGKTIVTSMHQPS---SRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 247 gLD~~-------~-----~~~i~~~L~~l~~-~g~tii~~tH~~~---~~i~~~~D~v~lL~~G~ 295 (679)
++|+. . ..++++.|+++++ .|.|||+++|... ..+...+|+++.|++|+
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99984 2 2378888888865 4999999999532 13678899999998753
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.71 E-value=2.7e-18 Score=203.90 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=104.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++.|++|+|+++++|++++|+||||||||||||++++..... ..| ...... ...++. -+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~~vpa~-~~~i~~---~d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------SYVPAE-EATIGI---VDGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------CCBSSS-EEEEEC---CSEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------ccccch-hhhhhH---HHHHHHhCChH
Confidence 467999999999999999999999999999999998753210 011 000000 011121 12222222222
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD 249 (679)
+++. ...+.+|+||+|++.|+++ +++|+++||||||+|||
T Consensus 727 d~l~---------------------------------------~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNIY---------------------------------------KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHHH---------------------------------------HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 2110 1123589999999999988 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEE-EeCCeEEE
Q 005754 250 STAAYRLV-STLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLV-LSEGRCLY 298 (679)
Q Consensus 250 ~~~~~~i~-~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~l-L~~G~iv~ 298 (679)
+.....+. .+++.+++ .|.|+|++||++. +.+++|+.-- +.++++.+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 99999997 77888865 5999999999964 4566665421 33444433
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.71 E-value=2e-20 Score=185.97 Aligned_cols=146 Identities=19% Similarity=0.208 Sum_probs=114.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCC--CCCCHHHHHHHHhhh
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY--PHLTVRETLVFCSLL 178 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~~ 178 (679)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ +.+|+++++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999998652 489999998776 5689999875431
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH----HHHHHHHHHHhhCCCeEEEeCCCCC-------
Q 005754 179 RLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE----RKRVSIAHEMLINPSLLILDEPTSG------- 247 (679)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe----rqRv~IA~aL~~~P~lllLDEPtsg------- 247 (679)
..+ .....+++.+.++.+++.+..+.+ ...+|+|| +||+++|++++.+|+++++||||++
T Consensus 60 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CCh----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111 112234566778888887654443 34689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCcEEEEEeCCcc
Q 005754 248 LDSTAAYRLVSTLGSL-VQRGKTIVTSMHQPS 278 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l-~~~g~tii~~tH~~~ 278 (679)
||+.....+.+.+++. .++|+|++.++|+..
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999886 456999999999743
No 101
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.71 E-value=1.1e-19 Score=191.69 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=87.2
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC-cCCCCCeeeEEEECCCCcccc-ccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR-LHQGHGLTGTILTNNNKPTKH-ISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~-~~~~~~~~G~i~~~g~~~~~~-~~~~i~yv~Q~~ 160 (679)
+++++|+++.++++++++| +|+||||+|||||++.|+|. ..+ .+| +.++|.+.... ..+.+++++|++
T Consensus 3 ~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 3 NLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ---------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC--
T ss_pred CCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---CCC-cccCCcccCCcceEeeEEEEecCC
Confidence 4567788899999999998 99999999999999999997 554 355 66666554321 135689999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.....+|+.|+..++.... ..+..+..++.+.+. . +.+.+++|||||||+.+||+++ +++
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~-----~~e~~~~l~~~l~~~------~-----~~~~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAIN-----CRDCFKTIISYIDEQ------F-----ERYLHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp -CCEEEEEEEEC----------------CTTHHHHHHHH------H-----HHHHHHHTSSCCTTCCCCCCCE----EEE
T ss_pred CcccCcchhhhhhhhhhcC-----cHHHHHHHHHHHHHH------H-----HHHHHHhCHHhhhhhhhhhhhh----eee
Confidence 8888899999887753221 001111112222111 1 1334579999999999988875 999
Q ss_pred EeCCCCC-CCHHHHHHHHHHHHHHHhC-CcEEEEEeCCcc
Q 005754 241 LDEPTSG-LDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPS 278 (679)
Q Consensus 241 LDEPtsg-LD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~ 278 (679)
+||||++ ||+... +.++++.++ +.++|++.||..
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999984 999873 566666554 789999999964
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.71 E-value=2.7e-18 Score=201.00 Aligned_cols=134 Identities=22% Similarity=0.222 Sum_probs=101.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC-CCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH-QGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~-~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
+++.+++|+|++ |++++|+||||||||||||+|+|+.. +. .|.+. . ..+..+++++| +++.++
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------p-a~~~~i~~v~~---i~~~~~ 627 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------P-AEEAHLPLFDG---IYTRIG 627 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------S-SSEEEECCCSE---EEEECC
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------e-hhccceeeHHH---hhccCC
Confidence 346789999999 99999999999999999999999753 22 23211 1 12345777776 455566
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH--hhCCCeEEEeCC-
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM--LINPSLLILDEP- 244 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL--~~~P~lllLDEP- 244 (679)
+.||+.. ++|+|+++++.+++++ +++|+++|||||
T Consensus 628 ~~d~l~~------------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpg 665 (765)
T 1ewq_A 628 ASDDLAG------------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVG 665 (765)
T ss_dssp C------------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTT
T ss_pred HHHHHHh------------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCC
Confidence 6665421 3789999999999999 999999999999
Q ss_pred --CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC
Q 005754 245 --TSGLDSTAA-YRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 245 --tsgLD~~~~-~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~ 285 (679)
|++||..+. ..+++.|++ .|.|+|++||+.. ..+++
T Consensus 666 rGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 666 RGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 999999875 578887766 5899999999953 44554
No 103
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.68 E-value=3.7e-18 Score=179.96 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=107.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cc--cCcEEEEecCCCCCCCCCHHHHH
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HI--SKRTGFVTQDDILYPHLTVRETL 172 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~--~~~i~yv~Q~~~l~~~lTV~E~l 172 (679)
+|++++|+||||||||||+++|+|+++|+ .|+|.++|.+... .+ ++.++|++|++.+.|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999874 5788998876422 11 34699999999888989999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 005754 173 VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252 (679)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~ 252 (679)
.++..... ...+++..|+.+..+ +-++..++||++|||+++.+|+.++| .||+.+
T Consensus 178 ~~~~~~~~------------d~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARGY------------DLLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHTC------------SEEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCCC------------CEEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 76432100 001223334433211 22455569999999999999995544 566666
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEeCCcc
Q 005754 253 AYRLVSTLGSLVQR-GKTIVTSMHQPS 278 (679)
Q Consensus 253 ~~~i~~~L~~l~~~-g~tii~~tH~~~ 278 (679)
..++++.++++.+. |.|+|++||+..
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 66777778887654 899999999853
No 104
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.67 E-value=8.8e-18 Score=197.74 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=110.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+++.+++|+|++ ++|++++|+||||||||||||+|+|..... .. |..... .+..++++.| +++.+++
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~------G~~vpa-~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YI------GSYVPA-QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TT------TCCBSS-SEEEECCCCE---EEEEEC-
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hc------Ccccch-hcccceeHHH---HHhhCCH
Confidence 346799999999 999999999999999999999999974321 01 111111 1234566555 4555666
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
.|++... + +.+|+|+++ ++.+..++++|+++|||||++|+
T Consensus 660 ~d~l~~~--------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gt 699 (800)
T 1wb9_A 660 ADDLASG--------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGT 699 (800)
T ss_dssp -------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCS
T ss_pred HHHHHhh--------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCC
Confidence 6654321 1 135666654 44445678999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 249 DSTAAYRL-VSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 249 D~~~~~~i-~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|+.....+ .++++.+.+ .|.++|++||+.. +..++|++..+.+|++.+...
T Consensus 700 d~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 700 STYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 99888776 788888887 4999999999964 457889887778888766543
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.65 E-value=8.1e-18 Score=180.91 Aligned_cols=165 Identities=21% Similarity=0.230 Sum_probs=102.9
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCC-CeeeE-EEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 93 ILNGI-TGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGH-GLTGT-ILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 93 iL~~v-s~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~-~~~G~-i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
.|+++ ++.+++|++++|+||||||||||++.|++.. +|+. +..|. +++++.... .++++++++|...+++. +
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-H
Confidence 45555 5899999999999999999999999999976 3322 12366 778776431 13445666666544332 3
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-------hCCCeEE
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-------INPSLLI 240 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-------~~P~lll 240 (679)
+.||+.+... .-|.+|+|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVARA---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEEC---------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEec---------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 4443322100 01455667777777776 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 241 LDEPTSGLDSTA------------AYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 241 LDEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
+||||++||+.. ..++++.|+++++ .|.|||+++|... .....++.......|+++.++
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTT
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeec
Confidence 999999999852 4567777777765 5899999999854 343344455555566655444
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.63 E-value=8e-16 Score=159.87 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=104.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 179 (679)
-+++|++++|+||||||||||++.|++.... |.+. .|..... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 4889999999999999999999999986542 3332 2333211 3457888766432 01222221 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC--CCCHHHH---H
Q 005754 180 LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS--GLDSTAA---Y 254 (679)
Q Consensus 180 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts--gLD~~~~---~ 254 (679)
. .... ...+++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1122 235567788888765443 4557999998875 68889999999999999 9998544 8
Q ss_pred HHHHHHHHHHh-CCcEEEEEeCCcc
Q 005754 255 RLVSTLGSLVQ-RGKTIVTSMHQPS 278 (679)
Q Consensus 255 ~i~~~L~~l~~-~g~tii~~tH~~~ 278 (679)
++++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88899999874 5999999999853
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.63 E-value=3e-17 Score=164.12 Aligned_cols=167 Identities=13% Similarity=0.145 Sum_probs=107.1
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-ccccC---cEEEEecCCCCCCC
Q 005754 91 RTILNGITG-MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISK---RTGFVTQDDILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~-~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-~~~~~---~i~yv~Q~~~l~~~ 165 (679)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+. .|.+.+.+.+.. ....+ .+++.+|+.... .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-K 84 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-T
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-C
Confidence 346777775 79999999999999999999999999876532 233433322211 11100 111111110000 0
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC--eEEEeC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS--LLILDE 243 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~--lllLDE 243 (679)
+++ ++.....++ .. .+ ....|.+|.++...+.....+|+ ++++||
T Consensus 85 ~~~------------------------~~~~~~~~~-~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe 131 (235)
T 2w0m_A 85 LII------------------------IDALMKEKE-DQ----WS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDS 131 (235)
T ss_dssp EEE------------------------EECCC-----CT----TB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEET
T ss_pred EEE------------------------EeccccccC-ce----ee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 000 000000000 00 00 12359999998888887788999 999999
Q ss_pred CCCCC--CHHHHHHHHHHHHHHHh-CCcEEEEEeCCcc-------HHHHHhCCeEEEEeCC
Q 005754 244 PTSGL--DSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPS-------SRVYQMFDKVLVLSEG 294 (679)
Q Consensus 244 PtsgL--D~~~~~~i~~~L~~l~~-~g~tii~~tH~~~-------~~i~~~~D~v~lL~~G 294 (679)
||+++ |+.....+++.|+++++ .|.|||+++|+.. ..+.++||++++|++.
T Consensus 132 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 132 VSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred chHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99888 99999999999999975 5999999999962 2378899999999854
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=1.6e-18 Score=170.36 Aligned_cols=156 Identities=13% Similarity=0.188 Sum_probs=100.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP 181 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 181 (679)
|++++|+||||||||||+++|+|+++ + +| +.++|.... ...++++||++|+. ... ++++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999886 3 35 556554332 23567899999975 111 1111 11100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHH-HHHH---HHhhCCCeEEEeC--CCCCCCHHHHH
Q 005754 182 RTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRV-SIAH---EMLINPSLLILDE--PTSGLDSTAAY 254 (679)
Q Consensus 182 ~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv-~IA~---aL~~~P~lllLDE--PtsgLD~~~~~ 254 (679)
+..+ ..+..++ ++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|.....
T Consensus 67 -------------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 67 -------------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp -------------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH
T ss_pred -------------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH
Confidence 0010 0111333 23456999999988 4444 5789999999999 89999987554
Q ss_pred HHHHHHHHHHhCCcEEEE----EeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 255 RLVSTLGSLVQRGKTIVT----SMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 255 ~i~~~L~~l~~~g~tii~----~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
.+ +++.+...++|+ ++|+.+ ..+.|+|..+.+|+++...
T Consensus 127 ~l----~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 127 AV----RQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HH----HHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HH----HHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 44 444444555553 238753 2456777777888887644
No 109
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=3.2e-17 Score=179.77 Aligned_cols=161 Identities=13% Similarity=0.103 Sum_probs=98.0
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEec
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q 158 (679)
+..+++++.|+++.+++|+||+| +|+||||||||||+|+|+|...+..+ .|.+.+++.. ....+.+++++|
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~--t~~~~~i~~v~q 82 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK--TVQVEQSKVLIK 82 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-------CCEEEEEECC--
T ss_pred EEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc--ceeeeeEEEEEe
Confidence 45667788888899999999998 99999999999999999998764322 2211111111 112346899999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC-
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS- 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~- 237 (679)
++.+++.+||.||+.+..... .......+.+.++ ..++.+++||++|||+++.+|+
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~ 139 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRV 139 (418)
T ss_dssp ----CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-C
T ss_pred cCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCe
Confidence 988888899999987753211 1111111111111 1366778899999999999999
Q ss_pred --eEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005754 238 --LLILDEPT-SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 238 --lllLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~ 276 (679)
++++|||| .|||+... +.++++.. +.+||+++|.
T Consensus 140 ~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 140 QCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp CEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred eEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence 99999999 69999873 44455544 6777777775
No 110
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.60 E-value=3.8e-17 Score=164.33 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=103.1
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH----HHHH
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV----RETL 172 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV----~E~l 172 (679)
-.-..++|++++|+||||||||||+|+|+|+.+|+ ...|.|.+.+.++....++.++|++|++..|+.+|+ .|++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 34467899999999999999999999999988753 467888888776544345678999997655544443 2222
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 005754 173 VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252 (679)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~ 252 (679)
.+. ++. .+.| +++ +.+++..++++||| ||+.+
T Consensus 88 ~~~-----------------------------------~~~--yg~~---~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 88 EVF-----------------------------------GNY--YGTS---REA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EET-----------------------------------TEE--EEEE---HHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHH-----------------------------------hcc--CCCC---HHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 110 000 0112 121 34555668999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHH
Q 005754 253 AYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES 311 (679)
Q Consensus 253 ~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 311 (679)
+.++.+.+. ++.||++++|++.. +.+ |+ +.+| .++++++...+..
T Consensus 120 ~~~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 120 AQQIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHHHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHHH
T ss_pred HHHHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHHH
Confidence 999999876 58999999999653 433 43 6777 5788887776643
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.60 E-value=2.6e-16 Score=169.37 Aligned_cols=134 Identities=19% Similarity=0.304 Sum_probs=92.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.+|+++ ...+|++++|+|||||||||||++|+|.++++. .|.|...+.+.....+...++++|.......+|
T Consensus 113 ~~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~---- 184 (356)
T 3jvv_A 113 EVFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESKKCLVNQREVHRDTLG---- 184 (356)
T ss_dssp HHHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSC----
T ss_pred HHHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhccccceeeeeeccccCC----
Confidence 355555 568899999999999999999999999887531 345544333322222333445555432211111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
-.+ +||++|..+|++|++|||| |.+
T Consensus 185 ------------------------------------------------~~~----~La~aL~~~PdvillDEp~---d~e 209 (356)
T 3jvv_A 185 ------------------------------------------------FSE----ALRSALREDPDIILVGEMR---DLE 209 (356)
T ss_dssp ------------------------------------------------HHH----HHHHHTTSCCSEEEESCCC---SHH
T ss_pred ------------------------------------------------HHH----HHHHHhhhCcCEEecCCCC---CHH
Confidence 111 8999999999999999999 665
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
+. +.+.++++.|.||++|+|+.+. + +.+||++.|..|
T Consensus 210 ~~----~~~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 210 TI----RLALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HH----HHHHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HH----HHHHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 54 4444556779999999999763 4 889999988554
No 112
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.58 E-value=3.4e-17 Score=188.25 Aligned_cols=165 Identities=14% Similarity=0.186 Sum_probs=110.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc-------cccccCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP-------TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~-------~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 179 (679)
++|+|||||||||||++|+|+..|. .+|.|.++|.+. ...+++.++|++|+..+++.+||+|++.+.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999997652 378888888663 1245678999999999999999999997753211
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC------CCCCCHHHH
Q 005754 180 LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP------TSGLDSTAA 253 (679)
Q Consensus 180 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP------tsgLD~~~~ 253 (679)
... ..++.. +++.++.+....|+++++||| |+|||+..+
T Consensus 126 ~~~----------------~~~~s~-------------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~ 170 (608)
T 3szr_A 126 AGE----------------GMGISH-------------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIG 170 (608)
T ss_dssp HCS----------------SSCCCS-------------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHH
T ss_pred cCC----------------ccccch-------------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHH
Confidence 000 001110 111122223358999999999 999999999
Q ss_pred HHHHHHHHHHHhC--CcEEEEEeCCcc------HHHHHh-----CCeEEEEeCCeEEEecChhhHHHH
Q 005754 254 YRLVSTLGSLVQR--GKTIVTSMHQPS------SRVYQM-----FDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 254 ~~i~~~L~~l~~~--g~tii~~tH~~~------~~i~~~-----~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
..+.++++++.++ +.++++++|+.. ..+.+. ...|.++.++.++..|+.+++.+.
T Consensus 171 ~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 171 YKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHH
Confidence 9999999997543 788899999864 122222 245788999888888876554443
No 113
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=8.8e-16 Score=151.45 Aligned_cols=172 Identities=15% Similarity=0.080 Sum_probs=95.8
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc-----CCCCCeeeEEEECCCCccccccCcEEEE
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL-----HQGHGLTGTILTNNNKPTKHISKRTGFV 156 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~-----~~~~~~~G~i~~~g~~~~~~~~~~i~yv 156 (679)
+++++.|+ ..++++ +.+++|+.++|+|+||||||||+|.|+|.. .+ ..|.+...+.. .....+-.
T Consensus 7 ~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~---~~~~~~~l- 76 (210)
T 1pui_A 7 QQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLF---EVADGKRL- 76 (210)
T ss_dssp ----CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEE---EEETTEEE-
T ss_pred hhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEE---EecCCEEE-
Confidence 34444554 356777 888999999999999999999999999976 33 23333221100 00000111
Q ss_pred ecCCCCC----CCCC---HHHHHHHHhh-hcC----------CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCccc
Q 005754 157 TQDDILY----PHLT---VRETLVFCSL-LRL----------PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGI 218 (679)
Q Consensus 157 ~Q~~~l~----~~lT---V~E~l~~~~~-~~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 218 (679)
.+.+.+. +... .+..+..... .+. ....+. ....+.++++..++... .+++ +...+
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~---~v~n-K~D~~ 150 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVL---VLLT-KADKL 150 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEE---EEEE-CGGGS
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeE---EEEe-cccCC
Confidence 1111110 0000 1111211110 000 001121 22234455666666532 1222 24469
Q ss_pred CHHHHHH-HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 005754 219 SGGERKR-VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269 (679)
Q Consensus 219 SgGerqR-v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~t 269 (679)
|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 151 s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 151 ASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp CHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred CchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999 89999999999999999999999999999999999998766644
No 114
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.54 E-value=1.3e-14 Score=140.51 Aligned_cols=90 Identities=20% Similarity=0.266 Sum_probs=72.4
Q ss_pred cCcccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEE
Q 005754 214 FIRGISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVL 289 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~ 289 (679)
.+..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++.+ +.++|++||+. .....+|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 356799999999999999975 4699999999999999999999999999865 46899999985 4678999998
Q ss_pred EEe--CCeE-EEecChhhHH
Q 005754 290 VLS--EGRC-LYFGKGSEAM 306 (679)
Q Consensus 290 lL~--~G~i-v~~G~~~~~~ 306 (679)
.+. +|.. +...+.++..
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEETTEEEEEECCHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHH
Confidence 664 5643 2333444433
No 115
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.4e-15 Score=166.32 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=116.1
Q ss_pred cccccccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEI--LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~--~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l 162 (679)
++.|++.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.... .... ...++.++|++|++.+
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~-~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQP-GVQLQSNTYDLQESNV 93 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCS-SCEEEEEEEEEEC--C
T ss_pred EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCc-cceEeeEEEEeecCcc
Confidence 56777777 9999999999999 99999999999999999999742 121111 1111 1234579999999988
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cc--CccCcccCHHHH
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTK--------EKTSIAEAVMAEL-GLTK----CENTI----IG--NSFIRGISGGER 223 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSgGer 223 (679)
++.+||.||+.|+.. .... ...+..++.|... ++.. ..|+. +. ....++|+-.+
T Consensus 94 ~~~ltv~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D- 166 (427)
T 2qag_B 94 RLKLTIVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD- 166 (427)
T ss_dssp EEEEEEEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-
T ss_pred ccccchhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-
Confidence 889999999866432 1111 1233445556554 5432 12222 10 01124677766
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEeCC
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS-LVQRGKTIVTSMHQ 276 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tii~~tH~ 276 (679)
+.|+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 167 --ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 167 --LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred --HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 7899999999999999999999999999999999987 87789999988865
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.52 E-value=7.8e-14 Score=138.42 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=98.8
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 93 ILNGIT-GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 93 iL~~vs-~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.|+++. +-+++|++++|+||||||||||++.|++ .. + .+.++ +..+.. .+..+-
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~--~-~~v~~----------------i~~~~~----~~~~~~ 62 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS--G-KKVAY----------------VDTEGG----FSPERL 62 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH--C-SEEEE----------------EESSCC----CCHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc--C-CcEEE----------------EECCCC----CCHHHH
Confidence 455555 3689999999999999999999999998 21 1 12233 322221 111111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH--HHHHHHHHHHhhC-CCeEEEeCCCCCC
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE--RKRVSIAHEMLIN-PSLLILDEPTSGL 248 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--rqRv~IA~aL~~~-P~lllLDEPtsgL 248 (679)
....... .... +++++.+.+ ...|+++ ++++..+++++.+ |+++++||||+++
T Consensus 63 ~~~~~~~----~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 63 VQMAETR----GLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHTT----TCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHhc----CCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 1110000 1111 122332211 1244443 6788888899986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CcEEEEEeCCcc------------HHHHHhCCeEEEEeCC
Q 005754 249 DSTA--------AYRLVSTLGSLVQR-GKTIVTSMHQPS------------SRVYQMFDKVLVLSEG 294 (679)
Q Consensus 249 D~~~--------~~~i~~~L~~l~~~-g~tii~~tH~~~------------~~i~~~~D~v~lL~~G 294 (679)
|+.. ..++++.|++++++ |.|||+++|... ..+...+|++++|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9743 35567778888764 899999999754 1467899999999854
No 117
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.50 E-value=1.2e-17 Score=163.18 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=110.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT 183 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 183 (679)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...++++|.....+.+|+.+++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFL--- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHH---
Confidence 789999999999999999999972 246778877543221 234667776544455678888765432110
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccC---ccCccc--CHHHHHHHHHHH------HHhhCCCeEEEeCCCCCCCHHH
Q 005754 184 LSTKEKTSIAEAVMAELGLTKCENTIIGN---SFIRGI--SGGERKRVSIAH------EMLINPSLLILDEPTSGLDSTA 252 (679)
Q Consensus 184 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SgGerqRv~IA~------aL~~~P~lllLDEPtsgLD~~~ 252 (679)
. -+.....+...+. +..+.+ |+|++|++.++. +++.+|+...+|| +||+..
T Consensus 71 --------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 --------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp --------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred --------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0 0100001110000 011234 888888888888 9999999888884 899988
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCC-ccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 253 AYRLVSTLGSLVQRGKTIVTSMHQ-PSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 253 ~~~i~~~L~~l~~~g~tii~~tH~-~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
... .+.++.+.+.+.++|.++|+ +. ++.+.||+|+ ++|+++..|+++-.
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 888 88888886668899999998 65 4788999999 99999999987643
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.47 E-value=7.7e-17 Score=157.14 Aligned_cols=153 Identities=15% Similarity=0.043 Sum_probs=95.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc--ccCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH--ISKRTGFVTQDDILYPHLTVRETLVFCSL 177 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~--~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 177 (679)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... .++.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 367999999999999999999999999722 57889988654221 1234677777543 45788888876432
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 005754 178 LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV 257 (679)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~ 257 (679)
....... ...++.++..+++..... . +..+..+|+|++||+.++|++..+|+++ +|+.....+.
T Consensus 78 ~~~~~~~-----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGY-----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSC-----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCC-----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 1100000 000011111111111110 0 1123469999999999999999999876 6888888888
Q ss_pred HHHHHHHhCCcEEEEEeC
Q 005754 258 STLGSLVQRGKTIVTSMH 275 (679)
Q Consensus 258 ~~L~~l~~~g~tii~~tH 275 (679)
+.++.+.+.+..+|.++|
T Consensus 142 ~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHTTCCGGGGGGEEECTT
T ss_pred HHHhccCcccccEEECCC
Confidence 877766443334444444
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.47 E-value=7.6e-15 Score=159.05 Aligned_cols=132 Identities=15% Similarity=0.285 Sum_probs=98.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.+|++++ +++|++++|+|||||||||||++|+|.++++ .+|.|...+.+.....++.+++|+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee-----------
Confidence 4677776 7899999999999999999999999988752 157887666554333456678888841
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
+|+.. ..+ +.+|+++|..+|+++++|||+ |+.
T Consensus 191 ----------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 22211 124 468999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+... .++. +..|.+|+.|+|+.+ +.+.+||++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6444 3433 356899999999954 677888887664
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.45 E-value=1.2e-14 Score=156.82 Aligned_cols=137 Identities=12% Similarity=0.150 Sum_probs=100.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--ccccCcEEEEe-cCCCCCCCCCHH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--KHISKRTGFVT-QDDILYPHLTVR 169 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--~~~~~~i~yv~-Q~~~l~~~lTV~ 169 (679)
+++++|+.+++|++++|+||||||||||+|+|+|.++++ +|.|.++|.... ...++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 349999999999999999999999999999999999863 689999875321 12456789998 65331
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD 249 (679)
+++++..+|..|+.++..+|+.+++|||..
T Consensus 234 -----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~--- 263 (361)
T 2gza_A 234 -----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG--- 263 (361)
T ss_dssp ----------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS---
T ss_pred -----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH---
Confidence 012222356666667777899999999986
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 250 STAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 250 ~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|.
T Consensus 264 ----~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ----GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ----THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3455667776554568899999964 567889998887764
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.44 E-value=6.7e-17 Score=164.82 Aligned_cols=152 Identities=21% Similarity=0.233 Sum_probs=98.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHh---cCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLA---GRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~---G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 179 (679)
++++++|+||||||||||+++|+ |...+ ..|++..++.+......+.+.+++|+..+++..|+.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 98764 3566666543321222334556678888888889999997643210
Q ss_pred CC-----CCCCHHHHHHHHHHHHHHcCCC--ccc-------cccccCccCcccCHHHHHHHHHHHHH-hhCCCeEEEe--
Q 005754 180 LP-----RTLSTKEKTSIAEAVMAELGLT--KCE-------NTIIGNSFIRGISGGERKRVSIAHEM-LINPSLLILD-- 242 (679)
Q Consensus 180 ~~-----~~~~~~~~~~~v~~~l~~lgL~--~~~-------~~~vg~~~~~~LSgGerqRv~IA~aL-~~~P~lllLD-- 242 (679)
.. ...+... ..++.+....... -.. -..+.++.+..||| |+ ++| +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 00 0111111 1122221111111 000 01122344557999 66 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhC
Q 005754 243 --EPTSGLDSTAAYRLVSTLGSLVQR 266 (679)
Q Consensus 243 --EPtsgLD~~~~~~i~~~L~~l~~~ 266 (679)
|||+|||..+...+.+.|+++.++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999998765
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=2.3e-15 Score=143.60 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=71.1
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccccc-CcEEEEecCCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS-KRTGFVTQDDI 161 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~-~~i~yv~Q~~~ 161 (679)
+++++++++.+++++|+++++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.+...... ++ +++|+..
T Consensus 12 ~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~--~~~q~~~ 85 (158)
T 1htw_A 12 FSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAG--KMIYHFD 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETT--EEEEEEE
T ss_pred HHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCC--cceeccc
Confidence 4566778888999999999999999999999999999999999988 63 6888998877643221 22 7999988
Q ss_pred CCCCCCHHHHHHH
Q 005754 162 LYPHLTVRETLVF 174 (679)
Q Consensus 162 l~~~lTV~E~l~~ 174 (679)
++ .+||.|++.+
T Consensus 86 l~-~ltv~e~l~~ 97 (158)
T 1htw_A 86 LY-RLADPEELEF 97 (158)
T ss_dssp CT-TCSCTTHHHH
T ss_pred cc-cCCcHHHHHH
Confidence 88 8999999965
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.42 E-value=1.6e-16 Score=171.70 Aligned_cols=172 Identities=15% Similarity=0.045 Sum_probs=99.0
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHhcCcCCCCC-eeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 93 ILNGITGMVSP--GEILAILGPSGSGKSTMLNVLAGRLHQGHG-LTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 93 iL~~vs~~i~~--Ge~~allGpnGsGKSTLL~~L~G~~~~~~~-~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
+.+.|++.|++ |+.++|+||||||||||+|+|+|+++++.+ ..|++.+++.... .+..++....
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~------------~~~~~~~~~~- 223 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGG------------DEQAMQYSDY- 223 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSS------------CTTSSCTTTH-
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCC------------CcccCChhHH-
Confidence 45789999999 999999999999999999999999876310 0044443211000 0000111112
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-hCCCeEEEeC---CC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-INPSLLILDE---PT 245 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-~~P~lllLDE---Pt 245 (679)
+++.+... +.......+.+.+-+ .++...+.....+|+|++||..+++++. .+|++++||| |+
T Consensus 224 ~~I~~~~q----------~~~~~~~t~~~nl~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 224 PQMALGHQ----------RYIDYAVRHSHKIAF---IDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp HHHHHHHH----------HHHHHHHHHCSSEEE---ESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred HHHHHHHH----------HHHHHHHhccCCEEE---EeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 22332110 000000000000000 0000001112346778888888888775 5999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 246 ------SGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 246 ------sgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
.++|+..+..+.+.|+++.+ .|.+|++++|. . +..+++|++.+++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 58999999999999999865 48899999975 3 3456666555543
No 124
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.42 E-value=5.8e-13 Score=144.20 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=68.4
Q ss_pred ccCcccCHHHHHHH------HHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC
Q 005754 213 SFIRGISGGERKRV------SIAHEMLIN-PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 213 ~~~~~LSgGerqRv------~IA~aL~~~-P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~ 285 (679)
..+..||||||||+ ++|++|+.+ |+++||||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence 34568999999988 567888999 999999999999999999999999999753 468999999974 57899
Q ss_pred CeEEEEeC
Q 005754 286 DKVLVLSE 293 (679)
Q Consensus 286 D~v~lL~~ 293 (679)
|++++|++
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999973
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.41 E-value=6.7e-14 Score=150.07 Aligned_cols=139 Identities=22% Similarity=0.176 Sum_probs=95.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC-CCCCeeeEEEEC-CCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH-QGHGLTGTILTN-NNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~-~~~~~~G~i~~~-g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
+++++.. .+|++++|+||||||||||+|+|+|... + .+|+|..+ |.......++.+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 4555554 4899999999999999999999999887 5 36788776 544333345679999999989999999984
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
. + ...+.++..+.+.++++.+|+.+..|.. +.++| ||+||++||+++ +++.
T Consensus 282 ~-------l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl---------------i~~~ 332 (358)
T 2rcn_A 282 G-------L-WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA---------------IAET 332 (358)
T ss_dssp C-------C-CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS---------------SCHH
T ss_pred h-------h-cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC---------------CCHH
Confidence 1 1 1245666667788899999998766544 45799 999999999764 3444
Q ss_pred HHHHHHHHHHHHHh
Q 005754 252 AAYRLVSTLGSLVQ 265 (679)
Q Consensus 252 ~~~~i~~~L~~l~~ 265 (679)
-.....++++++.+
T Consensus 333 R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 333 RFENYHRILESMAQ 346 (358)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 45555666666643
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=1.7e-13 Score=138.07 Aligned_cols=153 Identities=20% Similarity=0.279 Sum_probs=85.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc--CcCCCC--CeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHH
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGH--GLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVF 174 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G--~~~~~~--~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 174 (679)
+-+++|++++|+||||||||||++.|++ ..++.. ...|.+++++... + ...+....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~----------------~----~~~~~~~~ 78 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT----------------F----RPERLLAV 78 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC----------------C----CHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC----------------c----CHHHHHHH
Confidence 4589999999999999999999999999 343210 0235555554431 0 11111101
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH-HHHHHHHh--hCCCeEEEeCCCCCCCHH
Q 005754 175 CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR-VSIAHEML--INPSLLILDEPTSGLDST 251 (679)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-v~IA~aL~--~~P~lllLDEPtsgLD~~ 251 (679)
...+. ... +++++.+.+ ....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 79 ~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 79 AERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp HHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred HHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 01110 011 111221111 11244444332 23333444 479999999999999985
Q ss_pred -------H-----HHHHHHHHHHHHhC-CcEEEEEeCCccHH------------------HHHhCCeEEEEeCC
Q 005754 252 -------A-----AYRLVSTLGSLVQR-GKTIVTSMHQPSSR------------------VYQMFDKVLVLSEG 294 (679)
Q Consensus 252 -------~-----~~~i~~~L~~l~~~-g~tii~~tH~~~~~------------------i~~~~D~v~lL~~G 294 (679)
. ...+++.|++++++ |.|||+++|..... +...+|.+++|++|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 34566677777654 99999999964321 12279999999865
No 127
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.40 E-value=4.1e-17 Score=173.23 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=101.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCC-----CCeeeEEEECCCCccc-------------------cccCcEEEE---e
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQG-----HGLTGTILTNNNKPTK-------------------HISKRTGFV---T 157 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~-----~~~~G~i~~~g~~~~~-------------------~~~~~i~yv---~ 157 (679)
++++|+|+||||||||||.|.|..... ....|+|.++|.+... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999986210 0135666666644311 223456777 5
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRT---LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|+..+++..+|.||..++........ .+......+++.++..+++.+..+.. ..+|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 77666667788877654210000000 00000000111223334444433322 2589999999999888999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCC
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D 286 (679)
+|+++ ||| ..+.+.|+++. .+.||++++|++.+ ...++|
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 99987 998 77888888875 58999999998653 334443
No 128
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.39 E-value=2e-15 Score=145.99 Aligned_cols=138 Identities=19% Similarity=0.273 Sum_probs=90.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-------cccc-CcEE----EEecCCCCCCCCCHHHHH
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-------KHIS-KRTG----FVTQDDILYPHLTVRETL 172 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-------~~~~-~~i~----yv~Q~~~l~~~lTV~E~l 172 (679)
++++|+|+||||||||++.|+|++++.+...|.|.++|.+.. ..++ +.+| +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998865445799999987621 1233 3466 788876654 110
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE-------EEeCC
Q 005754 173 VFCSLLRLPRTLSTKEKTSIAEAVMAE-LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL-------ILDEP 244 (679)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll-------lLDEP 244 (679)
. .. +....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 01 111234556665 43 46788876 59999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 005754 245 TSG---LDSTAAYRLVSTLGSLVQRG 267 (679)
Q Consensus 245 tsg---LD~~~~~~i~~~L~~l~~~g 267 (679)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34555677777776666654
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.38 E-value=7.1e-16 Score=164.97 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=114.7
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------ccc
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HIS 150 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~ 150 (679)
+..+++++.|+.+.+|+++|+++++|++++|+||||||||||+|+|+|.+.++ .|+|.+.+.++.. ..+
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHh
Confidence 45567777887788999999999999999999999999999999999988753 5677777655421 235
Q ss_pred CcEEEEecCCCCCCCCC------------HHHHHHHHh-----------------------------hhcCCCCCCHHHH
Q 005754 151 KRTGFVTQDDILYPHLT------------VRETLVFCS-----------------------------LLRLPRTLSTKEK 189 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lT------------V~E~l~~~~-----------------------------~~~~~~~~~~~~~ 189 (679)
+++++++|++.+++..+ ++|.+.... .+..+. ...+.
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~ 184 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDEL 184 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C----
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccH
Confidence 67899999987765321 233321100 000000 00000
Q ss_pred H---HHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHH
Q 005754 190 T---SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI------NPSLLILDEPTSGLDSTAAYRLVSTL 260 (679)
Q Consensus 190 ~---~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~------~P~lllLDEPtsgLD~~~~~~i~~~L 260 (679)
+ +.+.+....+.++ ..|. .....+|+|++|++..+++++. +|++++ ||++|.....++.+.|
T Consensus 185 ~~i~~~i~~~~~ivvlN-K~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 185 QGIKKGIFELADMIAVN-KADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp --CCTTHHHHCSEEEEE-CCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred HHHHHHHhccccEEEEE-chhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 0 0011111112221 1110 1124589999999999999887 688886 9999999999999999
Q ss_pred HHHHh
Q 005754 261 GSLVQ 265 (679)
Q Consensus 261 ~~l~~ 265 (679)
.++.+
T Consensus 256 ~~~~~ 260 (337)
T 2qm8_A 256 EDHRS 260 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.38 E-value=1.6e-14 Score=160.02 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=104.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------c--ccCcEEEEecCCCCC
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------H--ISKRTGFVTQDDILY 163 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~--~~~~i~yv~Q~~~l~ 163 (679)
-+++|+++++|++++|+||||||||||+++|+|++++. .|+|.+++.+..+ . .+++++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998753 5788887655321 1 245799999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-hCC-CeEEE
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-INP-SLLIL 241 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-~~P-~lllL 241 (679)
+.+||++++.++..-.. . . -+++..|+.+... .+-.--+|++.+++++. ..| .++|.
T Consensus 360 p~~tV~e~l~~a~~~~~----D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNI----D------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTTC----S------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCC----C------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 88999999987643110 0 0 0122233322111 11122357888888664 457 45666
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCC
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQ 276 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~ 276 (679)
.++|+|.|.. +.++.+.+ .|.|.|+.||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 5688886543 34455543 48899999994
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.34 E-value=1.9e-13 Score=145.33 Aligned_cols=142 Identities=11% Similarity=0.131 Sum_probs=97.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------ccc--CcEEEEecCCCCCCCCCHHHH
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HIS--KRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~--~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
++|++++|+||||||||||++.|+|.+++. .|+|.++|.+..+ .++ ..+.+++|+..+.|.+||+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999998764 5788887766421 112 246699999999999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
+.++...... . -+++..|+.+..+. ....|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d----------~--vliDtaG~~~~~~~-----l~~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGID----------V--VLIDTAGRSETNRN-----LMDEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCS----------E--EEEEECCSCCTTTC-----HHHHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccch----------h--hHHhhccchhHHHH-----HHHHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 9875321100 0 01222344332221 122343 38888888878888885543
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEEeCCc
Q 005754 252 AAYRLVSTLGSLVQ-RGKTIVTSMHQP 277 (679)
Q Consensus 252 ~~~~i~~~L~~l~~-~g~tii~~tH~~ 277 (679)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 466666777764 589999999964
No 132
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.33 E-value=2.6e-12 Score=141.76 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=69.1
Q ss_pred CcccCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEE
Q 005754 215 IRGISGGERKRVSIAHEML----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV 290 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~l 290 (679)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 3459999999999999999 57999999999999999999999999999876689999999994 46788999999
Q ss_pred Ee
Q 005754 291 LS 292 (679)
Q Consensus 291 L~ 292 (679)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 133
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.32 E-value=1.1e-12 Score=123.66 Aligned_cols=97 Identities=18% Similarity=0.340 Sum_probs=72.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.+|+++ +|+.++|+||||+|||||+++|++...+. | ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g--------------~~~~~~~~~~~~~~------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----G--------------KNAAYIDAASMPLT------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----T--------------CCEEEEETTTSCCC-------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----C--------------CcEEEEcHHHhhHH-------
Confidence 456676 89999999999999999999999987641 2 01233333221100
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
+++.+|++|++|||++ +|..
T Consensus 79 -----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~ 98 (149)
T 2kjq_A 79 -----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNE 98 (149)
T ss_dssp -----------------------------------------------------------GGGGGCSEEEEESTTC-CCSH
T ss_pred -----------------------------------------------------------HHHhCCCEEEEeCccc-cChH
Confidence 1245799999999998 6665
Q ss_pred HHHHHHHHHHHHHhCCcE-EEEEeCCcc
Q 005754 252 AAYRLVSTLGSLVQRGKT-IVTSMHQPS 278 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~t-ii~~tH~~~ 278 (679)
.++.+.+++.++.++|++ +|+++|.+.
T Consensus 99 ~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 99 EQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 588999999998887888 899999654
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.31 E-value=7.3e-14 Score=153.02 Aligned_cols=170 Identities=12% Similarity=0.113 Sum_probs=97.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHH
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLV 173 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 173 (679)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.. .....+++|.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ft-Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFT-TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTC-SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccc-eecceeeEEEecCc--ceEEEEeccc
Confidence 489999999999999999999999999999999742 11222111 12223455554430 0011111100
Q ss_pred HHhhhcCCCCCCHHHH--HHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 174 FCSLLRLPRTLSTKEK--TSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
+............... .++++.++..+++. +.....||+||+||+.+|++|+.+|.++++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000001111111 11122233333433 223456999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHH-HhCCcEEEEEeCCccHHHHHhCCeE
Q 005754 252 AAYRLVSTLGSL-VQRGKTIVTSMHQPSSRVYQMFDKV 288 (679)
Q Consensus 252 ~~~~i~~~L~~l-~~~g~tii~~tH~~~~~i~~~~D~v 288 (679)
.+ ..++.+++. .+.|.+++.+|......+.++++.+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 77 455555544 4457777766544344455555433
No 135
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.30 E-value=9.9e-14 Score=145.20 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=88.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhh----
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL---- 177 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~---- 177 (679)
+++.+++|.||+|||||||.+.|++.+.+. | . . ++.+.+|+||+.+++. ++++|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 468899999999999999999999987631 1 0 1 3446667999988865 88899887521
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCcccCHHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHH
Q 005754 178 LRLPRTLSTKEKTSIAEAVMAELGLTK----CENTIIGNSFIRGISGGERKRVSIA--HEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~IA--~aL~~~P~lllLDEPtsgLD~~ 251 (679)
+.. ...+.....+...+.++.+.-.- .....+ ..+...+||||+||+.+| +++ +|+|+|+|||++++|+.
T Consensus 93 ~~~-~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~-p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQG-RGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVL-PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSS-SCSTTSBCHHHHHHHHHHHTC------CCEEEE-CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhh-ccCcchhHHHHHHHHHHHhhccCccccCcceee-ccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 110 01111112334556667664320 011111 134467999999999997 555 89999999999999986
Q ss_pred H
Q 005754 252 A 252 (679)
Q Consensus 252 ~ 252 (679)
.
T Consensus 169 ~ 169 (290)
T 1odf_A 169 L 169 (290)
T ss_dssp C
T ss_pred c
Confidence 4
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=3e-12 Score=123.66 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=43.1
Q ss_pred HhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 232 MLINPSLLILDEPTS-GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 232 L~~~P~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||.+..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 355999999999995 999999999999999988889999999999754
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.25 E-value=9.7e-15 Score=160.18 Aligned_cols=149 Identities=18% Similarity=0.166 Sum_probs=101.3
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cc
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HI 149 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~ 149 (679)
....++++..++...+|+++ +. ++|++++|+|||||||||||++|+|.++++ .|.|.+.+.+... ..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v 217 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQV 217 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEEC
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEE
Confidence 34556677777777899998 54 899999999999999999999999988763 5778777655421 22
Q ss_pred cCcEEEEe---------cCCCC--CCC----CCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 005754 150 SKRTGFVT---------QDDIL--YPH----LTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNS 213 (679)
Q Consensus 150 ~~~i~yv~---------Q~~~l--~~~----lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 213 (679)
.+.+++.+ |++.. ++. .|+.+++.++..-... .........+.++ .|..+|+.+..
T Consensus 218 ~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~~------- 289 (418)
T 1p9r_A 218 NPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPFL------- 289 (418)
T ss_dssp BGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHHH-------
T ss_pred ccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHHH-------
Confidence 34556655 88755 343 6899998875421100 0000011112223 46778887532
Q ss_pred cCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 214 FIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
.+..|||||+|| ||++|+.+|++..-
T Consensus 290 ~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 290 ISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 234799999999 99999999998763
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.23 E-value=2.4e-11 Score=132.43 Aligned_cols=154 Identities=15% Similarity=0.231 Sum_probs=88.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHH--hcCcCCCCC--eeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHH
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHG--LTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVF 174 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L--~G~~~~~~~--~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 174 (679)
+-+++|++++|+||||||||||++.| .+..+++.+ ..+.+++++.... ........
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~--------------------~~~rl~~~ 232 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF--------------------RPVRLVSI 232 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--------------------CHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc--------------------CHHHHHHH
Confidence 57899999999999999999999954 455543211 2345555554310 00000000
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH-HHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHH
Q 005754 175 CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG-GERKRVSIAHEML--INPSLLILDEPTSGLDST 251 (679)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~IA~aL~--~~P~lllLDEPtsgLD~~ 251 (679)
...+. ... +++++.+- +. +..++ .+.+.+.-+.+++ .+|+++++|||++.+|+.
T Consensus 233 a~~~g----l~~-------~~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 233 AQRFG----LDP-------DDALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp HHHTT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred HHHcC----CCh-------HhHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence 00110 000 01111111 11 11222 1233333333433 469999999999999975
Q ss_pred HH------------HHHHHHHHHHHhC-CcEEEEEeCCcc------------------HHHHHhCCeEEEEeCCe
Q 005754 252 AA------------YRLVSTLGSLVQR-GKTIVTSMHQPS------------------SRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 252 ~~------------~~i~~~L~~l~~~-g~tii~~tH~~~------------------~~i~~~~D~v~lL~~G~ 295 (679)
.. .++++.|++++++ |.|||+++|... ..+...+|.++.|++++
T Consensus 290 ~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 290 FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 43 6788889998865 999999999821 22466789999998763
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=1.1e-11 Score=132.41 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=74.3
Q ss_pred EEEECCCCCcHHHHHHHHhc-CcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC
Q 005754 107 LAILGPSGSGKSTMLNVLAG-RLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT 183 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G-~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 183 (679)
+.|.||||+|||||+++|++ +..+ ..|.+.++|..... ..++.+++++|.+.+.-..+ + . ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP---GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GN 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT---TCCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC---CCCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CC
Confidence 89999999999999999999 5554 25777777654321 22456788888764311100 0 0 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005754 184 LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263 (679)
Q Consensus 184 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l 263 (679)
.... .+++.++.+......+..+ .+|| +..+|+++++|||++ ||+.++..+.+.|++.
T Consensus 104 ~~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 0111 1233333332211111111 3566 788999999999999 9999999999999886
Q ss_pred HhCCcEEEEEeCCccH
Q 005754 264 VQRGKTIVTSMHQPSS 279 (679)
Q Consensus 264 ~~~g~tii~~tH~~~~ 279 (679)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 37899999999753
No 140
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.20 E-value=5.9e-13 Score=140.17 Aligned_cols=121 Identities=19% Similarity=0.200 Sum_probs=80.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCCCccc---ccc-CcEEEEecCCCCC-----CCCCH
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT---NNNKPTK---HIS-KRTGFVTQDDILY-----PHLTV 168 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~---~g~~~~~---~~~-~~i~yv~Q~~~l~-----~~lTV 168 (679)
+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|+..+. ..+ +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~---~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL---RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC---CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC---cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3468999999999999999999999 8775 3678887 7765432 122 3689999998553 78999
Q ss_pred HHHH--HHHh----hhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHH
Q 005754 169 RETL--VFCS----LLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 169 ~E~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
|++ .|.. .++.....+..+...+++++++.++|.+ ..+ .+++.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~-----~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYK-----SYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHH-----HHHHHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH-----HHHHHHHHHHHHHHHHhcc
Confidence 887 4431 0111110112233456889999999985 444 3455799999999999873
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.19 E-value=1.2e-13 Score=137.23 Aligned_cols=165 Identities=18% Similarity=0.154 Sum_probs=94.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRL 180 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 180 (679)
.++|++++|+||||||||||+++|+|++++. + ..+++|++++..++. +..+++........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----------------CceEEEecCCCcCCH-HHHHHhcccccCCC
Confidence 4789999999999999999999999998753 1 124555555544321 12222110000001
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH-HHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 005754 181 PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA-HEMLINPSLLILDEPTSGLDSTAAYRLVST 259 (679)
Q Consensus 181 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA-~aL~~~P~lllLDEPtsgLD~~~~~~i~~~ 259 (679)
+..... ....+.+..+...+..+.++.+. ...+|+||+||++++ ++++.++.++++|||..
T Consensus 80 ~~~~~~----~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------------- 141 (208)
T 3c8u_A 80 PETFDF----EGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------------- 141 (208)
T ss_dssp GGGBCH----HHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-------------
T ss_pred CchhhH----HHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-------------
Confidence 111111 12223333332222233334433 335799999999998 77888888888888741
Q ss_pred HHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 260 L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
.++.+.--.++++.+.....+.+...|. +..|+ +.+++.+.+.
T Consensus 142 -~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 142 -RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp -GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred -HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 1122223467778887655566666662 34454 6667766553
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.18 E-value=3.7e-14 Score=159.45 Aligned_cols=176 Identities=13% Similarity=0.117 Sum_probs=108.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCC------
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILY------ 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~------ 163 (679)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+ .|.|.++|..... .....++++.|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999764 6788887754211 1133456666543322
Q ss_pred ----------------CCCCHHHHHHHHhhhcCCCC----CCHHHHHHHHHHHHHHcCCCc--ccccccc--C---ccCc
Q 005754 164 ----------------PHLTVRETLVFCSLLRLPRT----LSTKEKTSIAEAVMAELGLTK--CENTIIG--N---SFIR 216 (679)
Q Consensus 164 ----------------~~lTV~E~l~~~~~~~~~~~----~~~~~~~~~v~~~l~~lgL~~--~~~~~vg--~---~~~~ 216 (679)
..++..|++.+......... ... ..++++++++.... .....+. + ....
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha----~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~ 399 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHA----GDINQMVYRLESEPLKVPRSMLQFLDIALVQTM 399 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEEC----SSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEE
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccccc----CCHHHHHHHHHhcccccHHHHHhhccEEEEEEE
Confidence 23444444433222111100 000 01223333333211 0000000 0 1234
Q ss_pred ccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EeCCccHHHHHhCC
Q 005754 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVT--SMHQPSSRVYQMFD 286 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~--~tH~~~~~i~~~~D 286 (679)
.+|+|||||+.++. + | |+|||+.....+.+.|.++.++|.|+++ ++|+.. ++...++
T Consensus 400 ~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 400 WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 58999999987751 2 7 9999999888888888877777889885 899864 4655553
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.14 E-value=2.6e-13 Score=144.80 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=110.1
Q ss_pred CCCCccccccccceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCCCccc---c
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPG-------EILAILGPSGSGKSTMLNVLAGRLHQG-HGLTGTILTNNNKPTK---H 148 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~G-------e~~allGpnGsGKSTLL~~L~G~~~~~-~~~~G~i~~~g~~~~~---~ 148 (679)
..+++...++.+.+++++++.+++| +.++|.||||+|||||+++|+|..... ...+|.+..++.+... .
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 3445666777788999999999887 899999999999999999999976311 0124444333322211 1
Q ss_pred -ccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHH
Q 005754 149 -ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT-LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV 226 (679)
Q Consensus 149 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 226 (679)
.++.+.++.|.+.+.+ ++.|++........... .......+.++..+..+++.. +++. +..||+|+|||+
T Consensus 100 ~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~ 171 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRF 171 (334)
T ss_dssp CCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTC
T ss_pred ccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhc
Confidence 2457999999887765 78888854332211000 011122233444455555533 3333 347999999998
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCe
Q 005754 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDK 287 (679)
Q Consensus 227 ~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~ 287 (679)
.++ .+||+.+..++.++|++.++. + ++|++. .+..++++
T Consensus 172 ~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 172 GII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp SEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred Cce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 655 788999999999999988753 4 256643 34555543
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=5.5e-14 Score=152.70 Aligned_cols=171 Identities=17% Similarity=0.134 Sum_probs=118.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcC----C-----CCCeeeEEEECCCCccc-----cccCc---EEEEecCCCC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLH----Q-----GHGLTGTILTNNNKPTK-----HISKR---TGFVTQDDIL 162 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~----~-----~~~~~G~i~~~g~~~~~-----~~~~~---i~yv~Q~~~l 162 (679)
.+++|+.++|+|+||+|||||+|+|+|... + -.+..|.+.++|..... ..++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 1 12367999988743211 11222 3477788888
Q ss_pred CCCCCHHHHH--HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC--Ce
Q 005754 163 YPHLTVRETL--VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP--SL 238 (679)
Q Consensus 163 ~~~lTV~E~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P--~l 238 (679)
.+..+..|++ .|...++. ++.++..++..+ +..+..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchhh
Confidence 8887776655 33332221 111122222211 22233356543 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCCccHHHHHhCCeEE-EEeCC-eEEEecChhh
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSL-VQRGKTIVTSMHQPSSRVYQMFDKVL-VLSEG-RCLYFGKGSE 304 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tii~~tH~~~~~i~~~~D~v~-lL~~G-~iv~~G~~~~ 304 (679)
+++|||+.++|+......++.++++ ++.|.||+ +|+. .++.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 76777864 9985 46889999999 99999 9988876544
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.01 E-value=1.1e-13 Score=143.58 Aligned_cols=143 Identities=13% Similarity=0.162 Sum_probs=96.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC-CC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD-IL 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~-~l 162 (679)
++...+++++++.+++| ++|.||||||||||+++|+|...+ +.+.++|.+... ...+.+++++|.. ..
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~ 102 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNS 102 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 34567899999999999 999999999999999999998653 578888866432 2234577788764 45
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
.|.+++.|++......+ .. ...+ .+.+.. +.....|||||+||+.|++++..+|++| |
T Consensus 103 ~p~i~~~Deid~~~~~r-------~~--~~~~------~~~~~~-----~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D 160 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRR-------SD--RETG------ASVRVV-----NQLLTEMDGLEARQQVFIMAATNRPDII--D 160 (274)
T ss_dssp CSEEEEEETCTTTCC------------------------CTTHH-----HHHHHHHHTCCSTTCEEEEEEESCGGGS--C
T ss_pred CCCeEeeehhhhhhccc-------CC--Ccch------HHHHHH-----HHHHHhhhcccccCCEEEEeecCChhhC--C
Confidence 56666666664321100 00 0000 011212 2334569999999999999999999986 8
Q ss_pred CCCC------------CCCHHHHHHHHHH
Q 005754 243 EPTS------------GLDSTAAYRLVST 259 (679)
Q Consensus 243 EPts------------gLD~~~~~~i~~~ 259 (679)
|++. -.|...+.++++.
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 8864 2355555555544
No 146
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.98 E-value=1e-10 Score=117.81 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=45.7
Q ss_pred hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHH-------HHHhCCeEEEEeC
Q 005754 234 INPSLLILDEPTSGL--DSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSR-------VYQMFDKVLVLSE 293 (679)
Q Consensus 234 ~~P~lllLDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~-------i~~~~D~v~lL~~ 293 (679)
.+|+++++|||++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 6655566666666665 5699999999986531 4578899999974
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.98 E-value=7.8e-14 Score=137.66 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=43.4
Q ss_pred HHH-HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 228 IAH-EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 228 IA~-aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
.++ +++.+|++++|||+|+++|..+.+.|.+.|.++.+. +...|.+ ..+|+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 445 677888888899999999999999999999887653 2334632 46899888753
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.96 E-value=5.1e-11 Score=125.30 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=67.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCCCccc--c-ccCcEEEEecCCCCCC----CCCH
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT---NNNKPTK--H-ISKRTGFVTQDDILYP----HLTV 168 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~---~g~~~~~--~-~~~~i~yv~Q~~~l~~----~lTV 168 (679)
+++.+|++++|+||||+|||||+|+|+|...+ .+|+|.+ +|+..+. . .+..+||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~---~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc---cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 55678999999999999999999999998875 3678876 5654322 1 1222799999987765 6899
Q ss_pred HHHHH--HHhh------hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH
Q 005754 169 RETLV--FCSL------LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR 225 (679)
Q Consensus 169 ~E~l~--~~~~------~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 225 (679)
|++. |... ++...-....+...+++++++.++|.+.+.... ..++.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 3211 111110111223356888999999976432222 2477777763
No 149
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.94 E-value=1.2e-10 Score=122.51 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=68.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCCCccc---cc-cCcEEEEecCCC-----------
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT---NNNKPTK---HI-SKRTGFVTQDDI----------- 161 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~---~g~~~~~---~~-~~~i~yv~Q~~~----------- 161 (679)
++.+|++++|+||||||||||||+|+|+..|+ +|+|.+ +|..... .. .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999998863 788888 7765432 11 236899999974
Q ss_pred -----CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCH
Q 005754 162 -----LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISG 220 (679)
Q Consensus 162 -----l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 220 (679)
++|.+|+ ||+.|.. .. ...+...+++++|+.+||. +..+ ++++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~-----~~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYE-----NYVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHH-----HHHHHHHH
Confidence 5888999 9887752 11 1122345688999999996 4333 33445664
No 150
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.92 E-value=2.6e-11 Score=127.88 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=74.5
Q ss_pred cCCCCccccccccceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeE
Q 005754 79 TDDQGSTAKIQERTILNGITGMV-------------------SPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGT 137 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~ 137 (679)
+..+++++.| .++++++++.+ ++|++++|+||||||||||+++|+|++. |+ +|+
T Consensus 38 i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~ 112 (308)
T 1sq5_A 38 LSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRR 112 (308)
T ss_dssp CCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCC
T ss_pred cchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCe
Confidence 4556667777 36899999988 8999999999999999999999999876 53 677
Q ss_pred EEE---CCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005754 138 ILT---NNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLL 178 (679)
Q Consensus 138 i~~---~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~ 178 (679)
|.+ +|.......++.++++ |+..+++.+|+.+++.+...+
T Consensus 113 i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 113 VELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp EEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred EEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 877 7765433334567888 877788889999999876554
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.87 E-value=6e-09 Score=115.64 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=110.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeee-EEEECCCCcc-ccccCc-EEEEecCCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTG-TILTNNNKPT-KHISKR-TGFVTQDDILYPHLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G-~i~~~g~~~~-~~~~~~-i~yv~Q~~~l~~~lT 167 (679)
-..|+++.+-+++|+++.|.|+||+|||||+..+++...+. .| .+.+.+.+.. ..+.++ .+...+ ..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~ 259 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENVAIFSLEMSAQQLVMRMLCAEGN-------IN 259 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCEEEEESSSCHHHHHHHHHHHHHT-------CC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEEECCCCHHHHHHHHHHHHcC-------CC
Confidence 34688888889999999999999999999999999865421 11 2222211111 111100 000000 00
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh--hCCCeEEEeCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML--INPSLLILDEPT 245 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~--~~P~lllLDEPt 245 (679)
. +. ++. ...+..+ .+++.+.++.++..+.. +-+ ..++|.+|.+ +.++.++ .+|+++++|+++
T Consensus 260 ~-~~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~ 323 (454)
T 2r6a_A 260 A-QN------LRT-GKLTPED-WGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQ 323 (454)
T ss_dssp H-HH------HHT-SCCCHHH-HHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGG
T ss_pred H-HH------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHH
Confidence 0 00 111 1123322 34455566665443321 211 3468999987 5667776 689999999999
Q ss_pred CCCCH--------HHHHHHHHHHHHHHhC-CcEEEEEeC---------C--cc-------HHHHHhCCeEEEEeCCeE
Q 005754 246 SGLDS--------TAAYRLVSTLGSLVQR-GKTIVTSMH---------Q--PS-------SRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 246 sgLD~--------~~~~~i~~~L~~l~~~-g~tii~~tH---------~--~~-------~~i~~~~D~v~lL~~G~i 296 (679)
...++ .....+.+.|+.++++ |.+||+++| + |. ..+.+.+|.|++|.+++.
T Consensus 324 ~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 324 LIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp GSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 87742 3446778888888865 999999999 2 32 136788999999987664
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.86 E-value=7.6e-10 Score=116.50 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=77.5
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHh
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCS 176 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 176 (679)
+++..++|++++|+|||||||||+++.|++.+.+. .|+|.+.+.+.. + ....|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~----r--------------~~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF----R--------------AAAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT----C--------------HHHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc----c--------------HHHHH------
Confidence 45556889999999999999999999999988642 244544332210 0 00011
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHH---HHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 005754 177 LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV---SIAHEMLINPSLLILDEPTSGLDSTAA 253 (679)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv---~IA~aL~~~P~lllLDEPtsgLD~~~~ 253 (679)
....+.+.+|+.. + ...|||+.+++ +|++++..+|+++|+|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1223445556642 1 24689999999 89999999999999999974 3455
Q ss_pred HHHHHHHHHHH
Q 005754 254 YRLVSTLGSLV 264 (679)
Q Consensus 254 ~~i~~~L~~l~ 264 (679)
..+++.|+++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.83 E-value=5.2e-09 Score=109.65 Aligned_cols=141 Identities=14% Similarity=0.186 Sum_probs=88.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP 181 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 181 (679)
++|++++++||||+||||+++.|++.+.+.. | +++.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G--------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H--------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C--------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C--------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 5799999999999999999999999876421 2 24677777652 245666554322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 005754 182 RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261 (679)
Q Consensus 182 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~ 261 (679)
+..|+... . ..+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11233211 0 0122 33355555 45999999999 99999876654444433
Q ss_pred HHH---hCCcEEEE-EeCCccHHHHHhCCeEEEEeCCeEEEe
Q 005754 262 SLV---QRGKTIVT-SMHQPSSRVYQMFDKVLVLSEGRCLYF 299 (679)
Q Consensus 262 ~l~---~~g~tii~-~tH~~~~~i~~~~D~v~lL~~G~iv~~ 299 (679)
-+. ..+.++++ ++|.. .++.+.++++..+..+.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 332 12334555 48874 457788887766666777654
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.83 E-value=5.3e-09 Score=112.08 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=87.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLL 178 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~ 178 (679)
+-+++|+++.|.||||+|||||+..++......+ ..+.|+.-+...- +. .
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g------------------~~vlyi~~E~~~~------~~--~---- 105 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG------------------GIAAFIDAEHALD------PE--Y---- 105 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------------------CCEEEEESSCCCC------HH--H----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC------------------CeEEEEECCCCcC------HH--H----
Confidence 3688999999999999999999888876432110 1234443332110 00 0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC--CCeEEEeCCCCCC--------
Q 005754 179 RLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN--PSLLILDEPTSGL-------- 248 (679)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~--P~lllLDEPtsgL-------- 248 (679)
.+.+|+.. .+-.+-+ ..+. .+-+.++++++.+ |+++++|||++.+
T Consensus 106 ------------------a~~lG~~~-~~l~i~~----~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~ 160 (349)
T 2zr9_A 106 ------------------AKKLGVDT-DSLLVSQ----PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGE 160 (349)
T ss_dssp ------------------HHHTTCCG-GGCEEEC----CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC
T ss_pred ------------------HHHcCCCH-HHeEEec----CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccc
Confidence 11122211 0001111 1233 2345678888765 9999999999998
Q ss_pred --CH---HHHHHHHHHHHHH----HhCCcEEEEEeCCccH---------------HHHHhCCeEEEEeCCeEEEecC
Q 005754 249 --DS---TAAYRLVSTLGSL----VQRGKTIVTSMHQPSS---------------RVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 249 --D~---~~~~~i~~~L~~l----~~~g~tii~~tH~~~~---------------~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|+ ..++.+.+.+++| .+.|.|||+++|.... .+..++|.++.+.+++++..|+
T Consensus 161 ~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 161 MGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2223445555555 3459999999996431 2567899999998877665554
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.82 E-value=5e-09 Score=109.70 Aligned_cols=127 Identities=17% Similarity=0.106 Sum_probs=84.0
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY 163 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~ 163 (679)
+.+.++... ++++++ +|++++++|+||+||||++..|++.+.+. .|++.+.+.+.....
T Consensus 82 l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~-------------- 140 (295)
T 1ls1_A 82 LKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPA-------------- 140 (295)
T ss_dssp HHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHH--------------
T ss_pred HHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHh--------------
Confidence 334444432 778888 99999999999999999999999987642 355666554331100
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
++ +.+ ..+.+..|+..... + .+-+-.+.+|.+|+.+...+++++|+||
T Consensus 141 ---~~-~ql---------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDt 188 (295)
T 1ls1_A 141 ---AR-EQL---------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDT 188 (295)
T ss_dssp ---HH-HHH---------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred ---HH-HHH---------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 00 100 01223345543210 0 0123445678899988889999999999
Q ss_pred C-CCCCCHHHHHHHHHHHHHH
Q 005754 244 P-TSGLDSTAAYRLVSTLGSL 263 (679)
Q Consensus 244 P-tsgLD~~~~~~i~~~L~~l 263 (679)
| +.++|.....++.+..+.+
T Consensus 189 pp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 189 AGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp CCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHhhhc
Confidence 9 9999998888887776654
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.79 E-value=9.7e-13 Score=136.38 Aligned_cols=130 Identities=12% Similarity=0.183 Sum_probs=85.5
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQD 159 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~ 159 (679)
+.+.++...+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ...+.+++++|.
T Consensus 55 l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 127 (278)
T 1iy2_A 55 IVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFET 127 (278)
T ss_dssp HHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence 344455667899999999999 89999999999999999999764 4677777654321 123346677776
Q ss_pred CC-CCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 160 DI-LYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 160 ~~-l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
.. ..+.+++.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|+
T Consensus 128 ~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 128 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPD 189 (278)
T ss_dssp HHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTT
T ss_pred HHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCch
Confidence 43 556677878775322111000 001112222233322 2489999999999999999987
Q ss_pred e
Q 005754 238 L 238 (679)
Q Consensus 238 l 238 (679)
+
T Consensus 190 ~ 190 (278)
T 1iy2_A 190 I 190 (278)
T ss_dssp S
T ss_pred h
Confidence 6
No 157
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.77 E-value=2.8e-10 Score=111.56 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=44.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc----cccccCcEEEEecCCCCCCCCCHHHH
Q 005754 98 TGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP----TKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 98 s~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~----~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++... ....++.++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56788999999999999999999999999863 123333221 12235568899998666555554443
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.76 E-value=1.4e-12 Score=133.08 Aligned_cols=130 Identities=12% Similarity=0.182 Sum_probs=84.5
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQD 159 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~ 159 (679)
+.+.++...+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ...+.+++++|.
T Consensus 31 l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (254)
T 1ixz_A 31 IVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFET 103 (254)
T ss_dssp HHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence 334455667899999999999 99999999999999999999764 4667777644321 122346677776
Q ss_pred C-CCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 160 D-ILYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 160 ~-~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
. ...+.+++.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|+
T Consensus 104 ~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 104 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGG
T ss_pred HHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCch
Confidence 4 3456677777774322111000 001122222333332 2489999999999999999998
Q ss_pred e
Q 005754 238 L 238 (679)
Q Consensus 238 l 238 (679)
+
T Consensus 166 ~ 166 (254)
T 1ixz_A 166 I 166 (254)
T ss_dssp G
T ss_pred h
Confidence 6
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.75 E-value=4.7e-10 Score=125.48 Aligned_cols=165 Identities=17% Similarity=0.155 Sum_probs=94.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhc--CcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCC--CHHHH
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHL--TVRET 171 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G--~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~l--TV~E~ 171 (679)
.+++++.++..++|.|++||||||+|+.|.. +.....+.---+.+|.+.. .+. ....+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~--el~--------~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML--ELS--------VYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS--GGG--------GGTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh--hhh--------hhccCCcccceeecC
Confidence 4788889999999999999999999999875 2222111112233343221 111 00011111 11111
Q ss_pred HHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHH----------HHHHHHhhCCC-eE
Q 005754 172 LVFCS-LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV----------SIAHEMLINPS-LL 239 (679)
Q Consensus 172 l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv----------~IA~aL~~~P~-ll 239 (679)
...+. .++ ....+.++| .++++..|+.+..+.. ......+|+||+||. .+++++...|. ++
T Consensus 229 ~~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 229 MKDAANALR----WCVNEMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 11111 111 012344444 4678888887643210 011225788887752 34556677887 88
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC----CcEEEEEeCCcc
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR----GKTIVTSMHQPS 278 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~----g~tii~~tH~~~ 278 (679)
++||+++-+|.. ...+.+.|.++++. |.++|++||+|+
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999988843 34566666666543 789999999987
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.72 E-value=1.4e-10 Score=133.23 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=102.9
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCC--
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD-- 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~-- 160 (679)
.+..-++...+++++++.+++|+.++|+||||+|||||+++|++...+. ..|.+.+++.+.. .....++++++..
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~-~~~p~i~~~p~g~~~ 115 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPED-ENMPRIKTVPACQGR 115 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTC-TTSCEEEEEETTHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCccc-ccCCcEEEEecchHH
Confidence 3344567788999999999999999999999999999999999988753 2477777766543 2345688888742
Q ss_pred --------------------CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH
Q 005754 161 --------------------ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG 220 (679)
Q Consensus 161 --------------------~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 220 (679)
..+..+++.+|+........+...-. +... ..-+.+|.-+... ....++|+
T Consensus 116 ~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~---~~~~L~G~~~~~~-----~~~g~~~~ 186 (604)
T 3k1j_A 116 RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGA---HAGALLGDVRHDP-----FQSGGLGT 186 (604)
T ss_dssp HHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTC---CHHHHHCEECCCC-----C----CCC
T ss_pred HHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCC---CHHhcCceEEech-----hhcCCccc
Confidence 11111222222110000000000000 0000 0111122111111 11246999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 005754 221 GERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262 (679)
Q Consensus 221 GerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~ 262 (679)
|++|++..++....++.+||+||... |++.....+.+.|.+
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999999988 899988888888864
No 161
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.69 E-value=3.5e-09 Score=117.62 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=46.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP 145 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~ 145 (679)
...+|+|+|+++++ |+++|+|||||||||||++|+|+++|+ +|+|.++|.+.
T Consensus 16 ~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 16 NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 35689999999999 999999999999999999999999874 67888888764
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.64 E-value=4.9e-09 Score=101.93 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l 263 (679)
+.+.+|++|+.+|+++++| ||++|..+..++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999988753
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.61 E-value=1.1e-09 Score=110.19 Aligned_cols=39 Identities=31% Similarity=0.343 Sum_probs=22.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-cCcC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-GRLH 129 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~-G~~~ 129 (679)
.+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 46789999999999999999999999999999999 9875
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.49 E-value=7.3e-08 Score=103.27 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.7
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 93 ILNGIT--GMVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 93 iL~~vs--~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-|+.+- +-+++|+++.|.||||+|||||+..+++...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344443 3689999999999999999999999998654
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.48 E-value=1e-10 Score=126.47 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=81.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCC-CCCCCCHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI-LYPHLTVR 169 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~-l~~~lTV~ 169 (679)
..+|+++++.+++|++++|.||||||||||+++|+|.. .|.+.....+ .......+++++|... ++++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~-~~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLP-LDRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSC-TTTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEecc-chhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999854 3455441111 1111223566666543 23333322
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---ccc----ccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAE---LGLTK-CE---NTI----IGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~~----vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
..+ ..+.... ........+.+.++. +.+.. .. +.. .-+.....+++|+++|+..+.+++..|++
T Consensus 229 ~~~----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGE----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTT----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHH----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 111 0000000 110011222333321 11110 00 000 00123456899999999988888889998
Q ss_pred EE-EeCCCC
Q 005754 239 LI-LDEPTS 246 (679)
Q Consensus 239 ll-LDEPts 246 (679)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 77 999987
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.45 E-value=1.4e-07 Score=104.99 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEeCCcc
Q 005754 220 GGERKRVSIAHEMLINPSLLILDEP----------TSGLDSTAAYRLVSTLGSLV----QRGKTIVTSMHQPS 278 (679)
Q Consensus 220 gGerqRv~IA~aL~~~P~lllLDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~tii~~tH~~~ 278 (679)
|++++|..++++....|.+||+||+ +.|.|......+.++|..+- +.+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5678888899999999999999999 44777777777777777663 34789999999974
No 167
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.36 E-value=1.4e-08 Score=102.13 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=40.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------------ccccCcEEEEecC
Q 005754 98 TGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------------KHISKRTGFVTQD 159 (679)
Q Consensus 98 s~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------------~~~~~~i~yv~Q~ 159 (679)
++++++ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.+.. ...++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 466666 899999999999999999999998874 467777765431 1235679999984
No 168
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.36 E-value=5e-07 Score=106.49 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=59.5
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-eCCccHHHHHhCCeEE
Q 005754 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTS-GLDSTAAYRLVSTLGSLVQRGKTIVTS-MHQPSSRVYQMFDKVL 289 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~~~P~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~~-tH~~~~~i~~~~D~v~ 289 (679)
+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|++| ||++ ..+.+++++.-
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~ 263 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAP 263 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCC
Confidence 44589999999999999999999999999996 999888777777776655456788885 8975 45777787543
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.36 E-value=1.7e-08 Score=99.05 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=37.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc---ccCcEEEEecCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH---ISKRTGFVTQDD 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~---~~~~i~yv~Q~~ 160 (679)
..+..+-....++|++++|+||||||||||+++|++.+ |.+.+++...... .+...++++|+.
T Consensus 16 ~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 16 ENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred hhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 33444444667899999999999999999999999865 5567776553221 122356666653
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.33 E-value=7e-07 Score=96.15 Aligned_cols=152 Identities=22% Similarity=0.229 Sum_probs=86.9
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHhcCcCCCC--------CeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH---
Q 005754 103 PGEI-LAILGPSGSGKSTMLNVLAGRLHQGH--------GLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE--- 170 (679)
Q Consensus 103 ~Ge~-~allGpnGsGKSTLL~~L~G~~~~~~--------~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E--- 170 (679)
+|-. ++|+|++|||||||+|.|+|...... ...|.+.++|.+. .+....|++.+.+ ...|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v--~l~DT~G~i~~lp----~~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI--MLVDTVGFIRGIP----PQIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE--EEEECCCBCSSCC----GGGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE--EEEeCCCchhcCC----HHHHHHHHH
Confidence 3444 99999999999999999999754211 2467888877432 1222344444321 111221
Q ss_pred HHHHHhh----hc-CCCCCCH---HHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH----HHH-hhCCC
Q 005754 171 TLVFCSL----LR-LPRTLST---KEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA----HEM-LINPS 237 (679)
Q Consensus 171 ~l~~~~~----~~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA----~aL-~~~P~ 237 (679)
.+..... +. ....... .+..+.+.++++.+++.+..--.++| +...+|+|+++|+.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 1111100 00 0001111 23334567788888876543223343 2445788888988887 444 33344
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQ 265 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~ 265 (679)
+ +|+|++|......+.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988654
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.31 E-value=3.5e-07 Score=89.06 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005754 226 VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264 (679)
Q Consensus 226 v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~ 264 (679)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887654
No 172
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.20 E-value=5.5e-07 Score=87.93 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=27.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
++++|++++|+||||||||||+++|++...|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998854
No 173
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.18 E-value=1.2e-06 Score=93.23 Aligned_cols=129 Identities=11% Similarity=0.135 Sum_probs=84.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g--------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD--------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT--------CEEEEEES------SSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC--------CeEEEEeC------CCCHHHH
Confidence 456777777999999999999999999999888764321 11 12344332 1333332
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
. .+.......+++.+..+ ..||.+|++|+..|...+.++++++.|+|...
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred H------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 2 22222222222222111 24999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHh-C-CcEEEEEeC
Q 005754 252 AAYRLVSTLGSLVQ-R-GKTIVTSMH 275 (679)
Q Consensus 252 ~~~~i~~~L~~l~~-~-g~tii~~tH 275 (679)
..++...++++.+ . |..+|++-|
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3467777777765 3 678888865
No 174
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.15 E-value=3.1e-08 Score=97.20 Aligned_cols=52 Identities=25% Similarity=0.317 Sum_probs=39.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEE--EECCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI--LTNNNK 144 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i--~~~g~~ 144 (679)
+.....+..++..++|++++|+||||||||||+++|++++.. .|.+ .++|..
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~ 63 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDN 63 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCch
Confidence 344555666777789999999999999999999999998752 2444 666543
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.13 E-value=1.5e-07 Score=96.14 Aligned_cols=49 Identities=29% Similarity=0.432 Sum_probs=36.7
Q ss_pred CCCc-cccc-cccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 81 DQGS-TAKI-QERTILNGITGMVSP---GEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 81 ~~~~-~~~~-~~~~iL~~vs~~i~~---Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+++ ++.| +.+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 20 TGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3444 4555 557799999999999 99999999999999999999998653
No 176
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.11 E-value=5.1e-06 Score=88.98 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=48.1
Q ss_pred cccCHHHHHHHHHHHHHhhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe--CCcc
Q 005754 216 RGISGGERKRVSIAHEMLINPSLLILD-EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM--HQPS 278 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~P~lllLD-EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~t--H~~~ 278 (679)
..+|+||+|++. +.+...++-++++| +|++|+|......+++.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 458999998876 55555677789999 99999999998888888877654 67777777 7753
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.09 E-value=8.1e-09 Score=115.52 Aligned_cols=132 Identities=14% Similarity=0.210 Sum_probs=83.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc----ccCcEEEEecCCC-C
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH----ISKRTGFVTQDDI-L 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~----~~~~i~yv~Q~~~-l 162 (679)
+....+++++++.+++| ++|.||||+|||||+++|++... .+.+.+++.+.... ..+++..++|... .
T Consensus 50 l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~ 122 (499)
T 2dhr_A 50 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRH 122 (499)
T ss_dssp HHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSS
T ss_pred hhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 44556788999999999 89999999999999999999764 45677776543221 1223455666542 3
Q ss_pred CCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 163 YPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
.|.+.+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |
T Consensus 123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--L 182 (499)
T 2dhr_A 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--L 182 (499)
T ss_dssp SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--S
T ss_pred CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--c
Confidence 4445555555321111100 00112333344444443 3788888888888899999987 7
Q ss_pred eCCCC
Q 005754 242 DEPTS 246 (679)
Q Consensus 242 DEPts 246 (679)
||+..
T Consensus 183 D~aLl 187 (499)
T 2dhr_A 183 DPALL 187 (499)
T ss_dssp CTTTS
T ss_pred Ccccc
Confidence 88875
No 178
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.09 E-value=9e-06 Score=86.95 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=36.3
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEeCCcc
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ---RGKTIVTSMHQPS 278 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~---~g~tii~~tH~~~ 278 (679)
.+|.++++||+... |+.....+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45789999999876 88888888888877665 5889999999863
No 179
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.08 E-value=4.6e-07 Score=88.85 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=46.4
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHH-HHHhCCeEEEEeCCeE
Q 005754 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSR-VYQMFDKVLVLSEGRC 296 (679)
Q Consensus 218 LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~-i~~~~D~v~lL~~G~i 296 (679)
.+.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.+++. .+.++|+.+|...+. ....||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~---- 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD---- 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE----
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE----
Confidence 3678889999998888887654332 3345666555555544432 356888888875431 256788888874
Q ss_pred EEecChhhHHHHH
Q 005754 297 LYFGKGSEAMSYF 309 (679)
Q Consensus 297 v~~G~~~~~~~~f 309 (679)
.+++...+..
T Consensus 132 ---~~~e~~~~Rl 141 (206)
T 1jjv_A 132 ---VSPQTQLARS 141 (206)
T ss_dssp ---CCHHHHHHHH
T ss_pred ---CCHHHHHHHH
Confidence 3555544443
No 180
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.03 E-value=1.4e-06 Score=83.94 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=25.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|++++|+||||||||||++.|++..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999765
No 181
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=1.7e-06 Score=84.61 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=24.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
...+++|||+++++|++++|+||+||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999865
No 182
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.02 E-value=2.5e-06 Score=81.83 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=32.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 95 ~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
+++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6889999999 9999999999999999999997654
No 183
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.00 E-value=3.9e-07 Score=92.88 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=44.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh---cCcCCCCCeeeEEE--------ECCCCcc-----ccccCcEEE
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA---GRLHQGHGLTGTIL--------TNNNKPT-----KHISKRTGF 155 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~---G~~~~~~~~~G~i~--------~~g~~~~-----~~~~~~i~y 155 (679)
.++++.+ ++|++++|+|||||||||++++|+ |...+ .+|.+. .+|.+.. ..+++.+++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 91 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDV 91 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCE
Confidence 3444543 789999999999999999999999 87654 367776 6665442 235567889
Q ss_pred EecCC
Q 005754 156 VTQDD 160 (679)
Q Consensus 156 v~Q~~ 160 (679)
++|.+
T Consensus 92 ~~~~~ 96 (252)
T 4e22_A 92 RFVSQ 96 (252)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 98754
No 184
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.98 E-value=1.1e-06 Score=92.81 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=53.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cc-----cCcEEEE-ecC
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HI-----SKRTGFV-TQD 159 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~-----~~~i~yv-~Q~ 159 (679)
++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+..+ .+ +..+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 47899999999999999999999999999999987653 3566665544321 12 4568888 665
Q ss_pred CCCCCCCCHHHHH
Q 005754 160 DILYPHLTVRETL 172 (679)
Q Consensus 160 ~~l~~~lTV~E~l 172 (679)
....|..++.+++
T Consensus 172 ~~~~p~~~~~~~l 184 (320)
T 1zu4_A 172 LNADPASVVFDAI 184 (320)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4444333333433
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.95 E-value=2.7e-05 Score=83.31 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=41.0
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeC
Q 005754 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG-KTIVTSMH 275 (679)
Q Consensus 218 LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~tH 275 (679)
-++.++++..+++..+.+|+++++.-..+..|..+ ...++.++.+...| .+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774334445443 45566777776555 57777766
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.94 E-value=2e-06 Score=94.93 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=60.6
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEE-EeCCeEEEecChhh--HHHH-
Q 005754 234 INPSLLILDEPTSGLDS-TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV-LSEGRCLYFGKGSE--AMSY- 308 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~-~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~l-L~~G~iv~~G~~~~--~~~~- 308 (679)
.+|++|++||+..-.+. .+...+...+.++.+.|+.||+++|.+..++..+.+++.- +..|.++..++++. ..+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999877664 6788899999998888999999999864332222222222 34566666666542 2222
Q ss_pred ---HHHcCCCCCCCCChHHHHHHHh
Q 005754 309 ---FESVGFSPSFPMNPADFLLDLA 330 (679)
Q Consensus 309 ---f~~~g~~~~~~~n~ad~~~~~~ 330 (679)
.+..|...+ ....+++.+..
T Consensus 273 ~~~~~~~~~~i~--~e~l~~la~~~ 295 (440)
T 2z4s_A 273 RKMLEIEHGELP--EEVLNFVAENV 295 (440)
T ss_dssp HHHHHHHTCCCC--TTHHHHHHHHC
T ss_pred HHHHHHcCCCCC--HHHHHHHHHhc
Confidence 333455444 24456665544
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.93 E-value=6.7e-05 Score=77.54 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCcEEEEEeCCcc---HHH
Q 005754 219 SGGERKRVSIAHEMLINPSLLILDEPTSGLDST----------AAYRLVSTLGSLVQ----RGKTIVTSMHQPS---SRV 281 (679)
Q Consensus 219 SgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~----------~~~~i~~~L~~l~~----~g~tii~~tH~~~---~~i 281 (679)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356677777777778899999999998766532 22334444444322 2467788888753 345
Q ss_pred HHhCCeEEEE
Q 005754 282 YQMFDKVLVL 291 (679)
Q Consensus 282 ~~~~D~v~lL 291 (679)
.+-|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 5567765544
No 188
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.91 E-value=2.9e-06 Score=82.05 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=24.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
|++++|+||||||||||+++|+|+.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998763
No 189
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.85 E-value=9.8e-06 Score=84.79 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=43.5
Q ss_pred cCHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-C--cEEEEEeCCccHHHHHhCCeE
Q 005754 218 ISGGERKRVSIAHEML--INPSLLILDEPTSGLDSTA-AYRLVSTLGSLVQR-G--KTIVTSMHQPSSRVYQMFDKV 288 (679)
Q Consensus 218 LSgGerqRv~IA~aL~--~~P~lllLDEPtsgLD~~~-~~~i~~~L~~l~~~-g--~tii~~tH~~~~~i~~~~D~v 288 (679)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. | ..+.++.|+-. .+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 899887 4566666 67889998 7899876 67788888888764 4 35666666633 354555543
No 190
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.83 E-value=6.9e-06 Score=80.95 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=26.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
++|++++|+||||||||||++.|++..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998764
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.82 E-value=7.6e-05 Score=79.48 Aligned_cols=139 Identities=12% Similarity=0.145 Sum_probs=76.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCc-CCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRL-HQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL 177 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~-~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 177 (679)
+-+++|+++.|.||+|+|||||+..++... .+.. . .| ....+.|+.-+..+ ...+-......
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-~------gg------~~~~vlyi~~E~~~----~~~~l~~~~~~ 179 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-G------GY------PGGKIIFIDTENTF----RPDRLRDIADR 179 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-T------TB------CCCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-c------CC------CCCeEEEEECCCCC----CHHHHHHHHHH
Confidence 468999999999999999999999988742 1100 0 00 01234455443321 22222222211
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH-HHHHHHHHHHh----hCCCeEEEeCCCCCCCHH-
Q 005754 178 LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE-RKRVSIAHEML----INPSLLILDEPTSGLDST- 251 (679)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~IA~aL~----~~P~lllLDEPtsgLD~~- 251 (679)
+. ... +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 180 ~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~ 236 (343)
T 1v5w_A 180 FN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDF 236 (343)
T ss_dssp TT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHC
T ss_pred cC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHh
Confidence 11 111 1223322111 1123322 34555566666 568999999999866432
Q ss_pred -----------HHHHHHHHHHHHHhC-CcEEEEEeCCc
Q 005754 252 -----------AAYRLVSTLGSLVQR-GKTIVTSMHQP 277 (679)
Q Consensus 252 -----------~~~~i~~~L~~l~~~-g~tii~~tH~~ 277 (679)
...+++..|++++++ |.+||++.|-.
T Consensus 237 ~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 237 SGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 134566666776654 88998888863
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.82 E-value=1.5e-05 Score=83.87 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=84.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
-.-|+++.+-+++|+++.|.|++|+|||||+.-++..... +| ..+.|+.=+ ++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----------~g--------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----------ND--------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----------TT--------CEEEEEESS------SCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC--------CeEEEEECC------CCHHH
Confidence 3457777777999999999999999999999888753211 01 124444322 33333
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
.. .+.......+.+.+..+ |. ..||.+|++|+..|...+.++++++.|+|...
T Consensus 111 l~------------------~R~~~~~~~i~~~~l~~---~~---~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NI------------------KRLIVTAGSINAQKIKA---AR---RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HH------------------HHHHHHHTTCCHHHHHS---CH---HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HH------------------HHHHHHHcCCCHHHHhc---CC---CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 22 12211111111111110 10 13899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHhC-CcE--EEEEeCC
Q 005754 251 TAAYRLVSTLGSLVQR-GKT--IVTSMHQ 276 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~-g~t--ii~~tH~ 276 (679)
..++.+.++++.++ |.. +|++-|-
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 45567777777654 666 8888763
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.82 E-value=7.9e-05 Score=78.63 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=76.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCc-CCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRL-HQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL 177 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~-~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 177 (679)
+-+++|+++.|.||+|+|||||+..++... .+. . .| | ....+.|+.-+..+ ...+-......
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~-~-~g-----g------~~~~vlyi~~e~~~----~~~~l~~~~~~ 164 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP-E-KG-----G------LSGKAVYIDTEGTF----RWERIENMAKA 164 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG-G-GT-----C------CSCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc-c-cC-----C------CCCeEEEEECCCCC----CHHHHHHHHHH
Confidence 568999999999999999999999888643 210 0 00 0 01234455433221 12221111111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHH-HHHHHHHHHHHh---hCCCeEEEeCCCCCCCH---
Q 005754 178 LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGG-ERKRVSIAHEML---INPSLLILDEPTSGLDS--- 250 (679)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG-erqRv~IA~aL~---~~P~lllLDEPtsgLD~--- 250 (679)
+. ... +++++.+- +. +..++. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 165 ~g----~~~-------~~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~ 221 (324)
T 2z43_A 165 LG----LDI-------DNVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYP 221 (324)
T ss_dssp TT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSC
T ss_pred hC----CCH-------HHHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhc
Confidence 11 111 11222111 11 113333 335677777787 56899999999976532
Q ss_pred -----HH----HHHHHHHHHHHHhC-CcEEEEEeCC
Q 005754 251 -----TA----AYRLVSTLGSLVQR-GKTIVTSMHQ 276 (679)
Q Consensus 251 -----~~----~~~i~~~L~~l~~~-g~tii~~tH~ 276 (679)
.. ..+++..|++++++ |.+||++.|-
T Consensus 222 ~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 222 GRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 24556666666654 8899998775
No 194
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.76 E-value=1.8e-06 Score=91.14 Aligned_cols=44 Identities=30% Similarity=0.265 Sum_probs=37.9
Q ss_pred ccccccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 86 AKIQERTILNGITGMVSPGE------ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge------~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..++.++.|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 68 ~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 68 FYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566778888888888776 999999999999999999999875
No 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.74 E-value=8.4e-06 Score=81.64 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=31.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK 144 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~ 144 (679)
..++|++++|.|+||||||||+++|+|. .|+|.+.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 3368999999999999999999999997 2456666655
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.71 E-value=1.3e-05 Score=92.89 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=72.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCHHHHHH
Q 005754 98 TGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTVRETLV 173 (679)
Q Consensus 98 s~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~ 173 (679)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..... +.++.+++.+|...+... +++.|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n-- 77 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF-- 77 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE--
Confidence 3567889999999999999999999999754321 124555 34433211 223445555554332211 11110
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 005754 174 FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~ 253 (679)
..||+ |.. .++ .......-..+..++++| |+.|+|+.+.
T Consensus 78 -------------------------------liDTp-G~~---~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~ 116 (665)
T 2dy1_A 78 -------------------------------LLDAP-GYG---DFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE 116 (665)
T ss_dssp -------------------------------EEECC-CSG---GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred -------------------------------EEeCC-Ccc---chH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH
Confidence 11111 110 011 111122234677888999 9999998876
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 254 YRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 254 ~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
. .++.+.+.+.++|++.|...
T Consensus 117 ~----~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 R----AWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp H----HHHHHHHTTCCEEEEEECGG
T ss_pred H----HHHHHHHccCCEEEEecCCc
Confidence 3 33334446888888888754
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.67 E-value=2.2e-05 Score=76.87 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=26.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+++|++++|+|+||||||||.+.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999999865
No 198
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.62 E-value=1.3e-05 Score=85.18 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=24.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998664
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.45 E-value=5.4e-05 Score=71.84 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+|++++|+|||||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999864
No 200
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=4.4e-05 Score=72.14 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
No 201
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.45 E-value=6.5e-05 Score=70.18 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=24.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+.++++.+| +.+|+|||||||||+|++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344556665 999999999999999999874
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.45 E-value=4.6e-05 Score=74.74 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=25.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|++++|+||||||||||++.|.+..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998764
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.43 E-value=0.00045 Score=75.66 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=68.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPR 182 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 182 (679)
++.+++++||+|+||||++..|++.+.+.+ +.| .++.-|.. . ....|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kV---------------llv~~D~~--r-~~a~eqL~--------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKV---------------GLVAADVY--R-PAAYDQLL--------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCE---------------EEEEECCS--C-HHHHHHHH---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeE---------------EEEecCcc--c-hhHHHHHH---------
Confidence 588999999999999999999998775321 222 22222210 0 01122221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC-CC--CCHHHHHHHHHH
Q 005754 183 TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT-SG--LDSTAAYRLVST 259 (679)
Q Consensus 183 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt-sg--LD~~~~~~i~~~ 259 (679)
..-+..|+.-... . .+..--+--+-+++.+...+++++|+|+|. .+ .|+....++.++
T Consensus 146 ------------~~~~~~gv~~~~~---~----~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i 206 (433)
T 3kl4_A 146 ------------QLGNQIGVQVYGE---P----NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEM 206 (433)
T ss_dssp ------------HHHHTTTCCEECC---T----TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHH
T ss_pred ------------HHHHhcCCceeec---c----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHH
Confidence 1222334332110 0 011111222234555555689999999997 35 788877777776
Q ss_pred HHHHHhCCcEEEEEeCC
Q 005754 260 LGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 260 L~~l~~~g~tii~~tH~ 276 (679)
++.+......+++..|.
T Consensus 207 ~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 207 YDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHCCSEEEEEEEGGG
T ss_pred HHhhCCcceEEEEeCcc
Confidence 66554344555555554
No 204
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.39 E-value=6.1e-05 Score=75.47 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCe
Q 005754 219 SGGERKRVSIAHEMLINPSLLILDEPTS-GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDK 287 (679)
Q Consensus 219 SgGerqRv~IA~aL~~~P~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~ 287 (679)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+...+-+++++|..-+.+.+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655543 33578899999999976 68877665555555444333456776654445545556553
No 205
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.37 E-value=4.9e-05 Score=74.35 Aligned_cols=30 Identities=37% Similarity=0.433 Sum_probs=27.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
.++|++++|+|+||||||||++.|++.+++
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999998754
No 206
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.35 E-value=0.00086 Score=66.98 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=29.7
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCC
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR--GKTIVTSMHQ 276 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~~tH~ 276 (679)
.+|+++|+..+.+.++......+..+++.+... ..++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 368999999998889887665555554443221 3588888884
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.34 E-value=1.7e-05 Score=84.36 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=42.1
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
.+..++++.+.+++++++.+++|.+++|+|++|+|||||++.|++...+
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 34 RHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3445556677889999999999999999999999999999999997754
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.33 E-value=0.00053 Score=71.36 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=26.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999865
No 209
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.30 E-value=9.3e-05 Score=81.16 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=28.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
+++.+|++++|+|||||||||||++|+++..+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999999998765
No 210
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.22 E-value=6.7e-05 Score=84.84 Aligned_cols=43 Identities=30% Similarity=0.369 Sum_probs=34.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEE-ECCCC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-TNNNK 144 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~-~~g~~ 144 (679)
.+++|++++|+|+||||||||+++|+|++.+.++ |.+. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G--~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGG--RCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS--SCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCC--ceEEEECCcH
Confidence 4789999999999999999999999999876321 2453 66543
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.22 E-value=0.00021 Score=84.66 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=27.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+++|+.++|.||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999764
No 212
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.21 E-value=3.1e-05 Score=87.63 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=44.5
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN 142 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g 142 (679)
++.+.++...+++++++++ +|+.++|+||||+|||||+++|++...+ ..|.+..++
T Consensus 88 ~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~i~~~~ 143 (543)
T 3m6a_A 88 KVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR---KFVRISLGG 143 (543)
T ss_dssp HHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC---EEEEECCCC
T ss_pred HHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC---CeEEEEecc
Confidence 3445555666788888888 8999999999999999999999998753 356666655
No 213
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.20 E-value=0.0055 Score=65.44 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=27.8
Q ss_pred eeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 94 LNGIT--GMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 94 L~~vs--~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
|+.+- +-+++|+++.|.||+|+|||||...++..
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44442 35889999999999999999999887764
No 214
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.18 E-value=0.00079 Score=70.49 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=34.7
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 233 LINPSLLILDEPTS-GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 233 ~~~P~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
..++++|++||+-. .-|......+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999865 2344778889999988887777777777754
No 215
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.15 E-value=0.00026 Score=69.82 Aligned_cols=44 Identities=7% Similarity=0.103 Sum_probs=30.7
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcE-EEEEeCCc
Q 005754 234 INPSLLILDEPTSGL-DSTAAYRLVSTLGSLVQRGKT-IVTSMHQP 277 (679)
Q Consensus 234 ~~P~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~t-ii~~tH~~ 277 (679)
.+|.++++||.-.-- +......+.+.+.++.+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965432 233377788888887766654 77777753
No 216
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.08 E-value=0.00028 Score=69.30 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=25.1
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+.++.+.+| +++|+|||||||||++++|.-.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 345566665 9999999999999999998643
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.07 E-value=0.00019 Score=71.85 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=27.7
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 93 ILNGITGMVS---PGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 93 iL~~vs~~i~---~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4677888777 9999999999999999999999998763
No 218
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.04 E-value=0.0036 Score=65.59 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+-+++|+++.|.||+|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999988875
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.01 E-value=0.0014 Score=63.54 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999998653
No 220
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.98 E-value=0.00089 Score=68.48 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999999864
No 221
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.96 E-value=0.0018 Score=64.61 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=43.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC---------CccHHHHHhCCeEEEEe
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH---------QPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH---------~~~~~i~~~~D~v~lL~ 292 (679)
+|+++++||--. |+. ++++.++.+++.|.+||++-| .+..++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999954 654 355667777777999999999 66678899999999875
No 222
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.93 E-value=0.0004 Score=68.52 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=37.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEE--------CCCCcc-----ccccCcEEEEecCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT--------NNNKPT-----KHISKRTGFVTQDD 160 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~--------~g~~~~-----~~~~~~i~yv~Q~~ 160 (679)
+.+++|+|||||||||+.++|++.+.......|++.. +|.+.. ..+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999865211113455544 444322 12445677777753
No 223
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.92 E-value=0.00044 Score=65.84 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=25.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++|++++|+|++||||||+.+.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999764
No 224
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.90 E-value=0.002 Score=70.83 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=80.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++....... | ..+.|+.=+ ++..+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---------g--------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE---------G--------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---------C--------CCEEEEESS------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---------C--------CeEEEEECC------CCHHHH
Confidence 34666666799999999999999999999988876432100 1 124443321 232221
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
..+... ...++.... +. ...|+..+.+|+.-|...+.+.++++.|+|. ++.
T Consensus 245 ------------------~~R~~~--~~~~i~~~~---l~---~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~- 295 (444)
T 2q6t_A 245 ------------------TLRMMC--SEARIDMNR---VR---LGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTL- 295 (444)
T ss_dssp ------------------HHHHHH--HHTTCCTTT---CC---GGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBH-
T ss_pred ------------------HHHHHH--HHcCCCHHH---Hh---CCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH-
Confidence 111111 122332210 11 1259999999999998888888999988874 333
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEEeC
Q 005754 252 AAYRLVSTLGSLVQ-RGKTIVTSMH 275 (679)
Q Consensus 252 ~~~~i~~~L~~l~~-~g~tii~~tH 275 (679)
.++...++++.+ .|..+|++-+
T Consensus 296 --~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 296 --MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp --HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred --HHHHHHHHHHHHHcCCCEEEEcC
Confidence 345666666654 4777777755
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.85 E-value=0.0011 Score=68.67 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=23.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+.|.||+|+|||||.++|++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 6899999999999999999999764
No 226
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.83 E-value=0.00061 Score=65.37 Aligned_cols=38 Identities=32% Similarity=0.327 Sum_probs=28.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN 142 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g 142 (679)
.+++|+|+||||||||++.|.+.+...+...|.+..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 57899999999999999999987643222356666544
No 227
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.78 E-value=0.0012 Score=63.27 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=20.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
..+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 34789999998888 5689999999999999999974
No 228
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.77 E-value=0.0065 Score=64.68 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
No 229
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.77 E-value=0.00061 Score=72.67 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
+++.+++|+|++|||||||+|.|+|...+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 46789999999999999999999997654
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.77 E-value=0.00056 Score=66.71 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999999865
No 231
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.74 E-value=0.00047 Score=74.01 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=43.5
Q ss_pred ccCCCCccccccc-cceee--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 78 STDDQGSTAKIQE-RTILN--------------GITGMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 78 ~~~~~~~~~~~~~-~~iL~--------------~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.+++++..|.. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3566777777654 55888 899999999999999999999999999999865
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.74 E-value=0.0006 Score=65.44 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=26.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777888999999999999999999999875
No 233
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.0018 Score=68.63 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
No 234
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.72 E-value=0.0036 Score=68.86 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=28.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
-|+.+.+-+++|+++.|.|++|+|||||.--++..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 45555556899999999999999999998777653
No 235
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.66 E-value=0.00082 Score=63.46 Aligned_cols=27 Identities=48% Similarity=0.679 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
No 236
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.66 E-value=0.0059 Score=61.22 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++..-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 444568899999999999999999854
No 237
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.00018 Score=76.04 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=40.3
Q ss_pred ccccccccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCcCC
Q 005754 84 STAKIQERTILNGITGMVSPGEI--LAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~--~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
+...++...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 44455667789999999999998 999999999999999999997653
No 238
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.61 E-value=0.00081 Score=65.26 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 239
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.59 E-value=0.0015 Score=71.72 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=29.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC----CCC-----CeeeEEEECCCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH----QGH-----GLTGTILTNNNK 144 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~----~~~-----~~~G~i~~~g~~ 144 (679)
.++|+|+||+|||||+|.|.|... +.. ...|.+.++|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 699999999999999999999742 111 245777777753
No 240
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.56 E-value=0.00042 Score=74.24 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=35.4
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
...++...++++.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 19 ~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 19 GFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp --CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred EeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 3455566677788899999987 9999999999999999988643
No 241
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.54 E-value=0.0012 Score=70.84 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=27.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~ 125 (679)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 36677788776 99999999999999999986
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.42 E-value=0.00071 Score=73.99 Aligned_cols=53 Identities=17% Similarity=0.067 Sum_probs=39.3
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK 144 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~ 144 (679)
.+.++... +++++. +|++++++|+||+||||++..|++.+.+. .+.|.+.+.+
T Consensus 83 ~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 83 KEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp HHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred HHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 33444433 678887 89999999999999999999999988753 3455554443
No 243
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.41 E-value=0.00022 Score=75.91 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=34.1
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCcC
Q 005754 91 RTILNGITGMVSPGEI--LAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~--~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3477888888889988 99999999999999999998653
No 244
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.41 E-value=0.031 Score=58.60 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
No 245
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.38 E-value=0.0017 Score=62.05 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=25.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|.++.|+|++||||||+.+.|+..+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999998765
No 246
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.38 E-value=0.0065 Score=61.19 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.++|+|++|+|||||+|.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999998643
No 247
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.33 E-value=0.0015 Score=64.05 Aligned_cols=29 Identities=34% Similarity=0.327 Sum_probs=26.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++|.+++|.|++||||||+.+.|++.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999999999775
No 248
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.33 E-value=0.0019 Score=61.51 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 249
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.31 E-value=0.0019 Score=60.21 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.30 E-value=0.0016 Score=63.22 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999865
No 251
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.20 E-value=0.0027 Score=63.31 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=49.0
Q ss_pred HHhhCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEeC-----Cc----------------cHHHHHhCCeE
Q 005754 231 EMLINPSLLILDEPTSG-LDSTAAYRLVSTLGSLVQRGKTIVTSMH-----QP----------------SSRVYQMFDKV 288 (679)
Q Consensus 231 aL~~~P~lllLDEPtsg-LD~~~~~~i~~~L~~l~~~g~tii~~tH-----~~----------------~~~i~~~~D~v 288 (679)
++..+|+++++||+-.- .+........+.+..+...|..++.|+| .. .+.+++.+|.|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v 159 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDL 159 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeE
Confidence 34578999999998642 3322223334444445567889999998 11 12355667777
Q ss_pred EEEeCCeEEEecChhhHHHHHHHcCCCCC
Q 005754 289 LVLSEGRCLYFGKGSEAMSYFESVGFSPS 317 (679)
Q Consensus 289 ~lL~~G~iv~~G~~~~~~~~f~~~g~~~~ 317 (679)
.+++ -+|+++.+.+.+-..-.|
T Consensus 160 ~lvD-------~~p~~l~~rl~~g~vy~~ 181 (228)
T 2r8r_A 160 VLID-------LPPRELLERLRDGKVYVP 181 (228)
T ss_dssp EEBC-------CCHHHHHHHHHTTCCCCT
T ss_pred EEec-------CCHHHHHHHHHCCCccCh
Confidence 7664 478887777665433333
No 252
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.18 E-value=0.00044 Score=67.00 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=30.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 357888888888875 689999999999999999873
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.14 E-value=0.0026 Score=59.40 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 254
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.13 E-value=0.087 Score=58.57 Aligned_cols=34 Identities=26% Similarity=0.149 Sum_probs=27.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 3444444589999999999999999999877764
No 255
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.12 E-value=0.075 Score=56.82 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=24.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 579999999999999999999977764
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.11 E-value=0.003 Score=59.58 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998654
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.09 E-value=0.0027 Score=63.31 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999999754
No 258
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.04 E-value=0.0054 Score=64.05 Aligned_cols=52 Identities=13% Similarity=0.051 Sum_probs=29.9
Q ss_pred hhCCCeEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 233 LINPSLLILDEPT-SGLDSTAAYRLVS-TLGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 233 ~~~P~lllLDEPt-sgLD~~~~~~i~~-~L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
+.++++|++||.- ..+++..+..++. +|......++.+|+||+.+..++...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2344444444554 66554344667888888766555443
No 259
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.04 E-value=0.0021 Score=64.87 Aligned_cols=35 Identities=26% Similarity=0.641 Sum_probs=25.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.++++++..++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455666666666 88999999999999999998653
No 260
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.03 E-value=0.02 Score=72.03 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 49999999999999999999999988754
No 261
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.00 E-value=0.0031 Score=59.65 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 262
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.99 E-value=0.003 Score=59.95 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999863
No 263
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.94 E-value=0.025 Score=54.89 Aligned_cols=53 Identities=13% Similarity=0.317 Sum_probs=41.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC---------CccHHHHHhCCeEEEEe
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH---------QPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH---------~~~~~i~~~~D~v~lL~ 292 (679)
+.+++++||--- +|+. .++.+++++..|..||++-+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999533 6543 36677887778999999999 55678899999998775
No 264
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.92 E-value=0.004 Score=59.19 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 265
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.86 E-value=0.023 Score=54.53 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=29.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
++.++++||. ..+++.....+.+.+.+. ..+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6789999995 457777777777776653 2356677777765
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.86 E-value=0.0041 Score=62.45 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
No 267
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.82 E-value=0.0038 Score=59.51 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998643
No 268
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.81 E-value=0.0044 Score=59.04 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+++|+|++|||||||++.|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998764
No 269
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.80 E-value=0.0012 Score=68.89 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=30.3
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 95 NG-ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 95 ~~-vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
++ +++..+ |++++++|+||+||||++..|++...+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45 777766 999999999999999999999997753
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.76 E-value=0.0046 Score=62.64 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999865
No 271
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.75 E-value=0.0032 Score=63.60 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=29.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344443 567788999999999999999999998654
No 272
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.75 E-value=0.0051 Score=60.25 Aligned_cols=24 Identities=46% Similarity=0.542 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 273
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.71 E-value=0.0043 Score=67.08 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
..+..|..++|+|+||+|||||+|.|+|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34567888999999999999999999996
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.70 E-value=0.0052 Score=57.07 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 005754 106 ILAILGPSGSGKSTMLNVL 124 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L 124 (679)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 275
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.69 E-value=0.02 Score=52.32 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=30.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
+..++++||.- .|++..+..+.+.+.+..+.+..+|++|+.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999964 6788888888888877544456677777654
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.61 E-value=0.0061 Score=57.87 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998654
No 277
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.61 E-value=0.0064 Score=58.53 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999865
No 278
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.61 E-value=0.0056 Score=59.28 Aligned_cols=23 Identities=48% Similarity=0.720 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999987654
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.57 E-value=0.0063 Score=58.43 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998653
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.57 E-value=0.0056 Score=57.99 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++..+.|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999998543
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.54 E-value=0.0073 Score=58.34 Aligned_cols=27 Identities=33% Similarity=0.526 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 282
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.53 E-value=0.025 Score=55.82 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC---------CccHHHHHhCCeEEEEe
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH---------QPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH---------~~~~~i~~~~D~v~lL~ 292 (679)
+.+++++||--- +|+. .++.|++++..|+.||++-+ .+..++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 479999999865 6543 33777887778999999999 77888999999999875
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.46 E-value=0.0078 Score=56.52 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G 126 (679)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 284
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.43 E-value=0.05 Score=57.76 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344568899999999999999999754
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.40 E-value=0.0073 Score=62.39 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..|.++.|.|||||||||+.+.|+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998754
No 286
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.37 E-value=0.0076 Score=56.86 Aligned_cols=23 Identities=43% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999754
No 287
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.36 E-value=0.075 Score=56.98 Aligned_cols=26 Identities=31% Similarity=0.640 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.-+.|.||+|+|||||.+.|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998754
No 288
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.36 E-value=0.0079 Score=58.29 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998754
No 289
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.34 E-value=0.0041 Score=60.45 Aligned_cols=24 Identities=38% Similarity=0.720 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 290
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.32 E-value=0.0078 Score=57.48 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998644
No 291
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.32 E-value=0.0085 Score=57.56 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~ 127 (679)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999975
No 292
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.25 E-value=0.011 Score=61.76 Aligned_cols=38 Identities=37% Similarity=0.323 Sum_probs=33.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
.....+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 130 ~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 130 ARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp CEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3457899988888 7899999999999999999999874
No 293
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.21 E-value=0.011 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999864
No 294
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.20 E-value=0.0091 Score=57.90 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999754
No 295
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.20 E-value=0.0077 Score=61.35 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999964
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.12 E-value=0.0096 Score=56.49 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 297
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.10 E-value=0.021 Score=55.80 Aligned_cols=38 Identities=34% Similarity=0.365 Sum_probs=31.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
.....++..-..+ .|..++|+||+|+|||||...|+.+
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3455778877665 5789999999999999999999865
No 298
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.011 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.95 E-value=0.0098 Score=56.90 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998754
No 300
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.92 E-value=0.014 Score=57.25 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
No 301
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.90 E-value=0.012 Score=54.01 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 302
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.89 E-value=0.013 Score=55.84 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 303
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.88 E-value=0.25 Score=62.41 Aligned_cols=74 Identities=11% Similarity=0.050 Sum_probs=47.2
Q ss_pred HHHHHHh--hCCCeEEEeCCCCCCCH-------------HHHHHHHHHHHHH---H-hCCcEEEEEeCCcc---------
Q 005754 227 SIAHEML--INPSLLILDEPTSGLDS-------------TAAYRLVSTLGSL---V-QRGKTIVTSMHQPS--------- 278 (679)
Q Consensus 227 ~IA~aL~--~~P~lllLDEPtsgLD~-------------~~~~~i~~~L~~l---~-~~g~tii~~tH~~~--------- 278 (679)
.+++.++ .+|+++++|..++=... ...+.+.+.+++| + +.|.+||++.|-..
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4455554 47999999999876641 1223445555555 3 35999999988421
Q ss_pred ------HHHHHhCCeEEEEeCCeEEEec
Q 005754 279 ------SRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 279 ------~~i~~~~D~v~lL~~G~iv~~G 300 (679)
..+...+|-++.+.+.+.+..|
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~~~~~g 558 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIGAVKEG 558 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEEEEEET
T ss_pred ccCCCCcceeeeCCEEEEEEeccccccC
Confidence 2466789988888765443333
No 304
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.88 E-value=0.06 Score=68.75 Aligned_cols=76 Identities=9% Similarity=0.049 Sum_probs=49.0
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---Hh-CCcEEEEEeCCccH------
Q 005754 225 RVSIAHEML--INPSLLILDEPTSGLD-S------------TAAYRLVSTLGSL---VQ-RGKTIVTSMHQPSS------ 279 (679)
Q Consensus 225 Rv~IA~aL~--~~P~lllLDEPtsgLD-~------------~~~~~i~~~L~~l---~~-~g~tii~~tH~~~~------ 279 (679)
-+.+++.++ .+|+++++|.-++=.. + .....+.+.|++| ++ .|.+||++.|-...
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 445666665 4699999999876552 1 1233455666666 44 58999999884211
Q ss_pred ---------HHHHhCCeEEEEeCCeEEEec
Q 005754 280 ---------RVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 280 ---------~i~~~~D~v~lL~~G~iv~~G 300 (679)
.+...+|-++.|.+......|
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~~~~g 558 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred CCcCCCCcchhhhhCCEEEEEEecccccCC
Confidence 366788999998765544433
No 305
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.84 E-value=0.014 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999854
No 306
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.84 E-value=0.014 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 307
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.84 E-value=0.013 Score=56.39 Aligned_cols=23 Identities=48% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999854
No 308
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.78 E-value=0.011 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
No 309
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.77 E-value=0.014 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 310
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.77 E-value=0.014 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999854
No 311
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.76 E-value=0.011 Score=55.82 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=18.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.74 E-value=0.014 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 313
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.72 E-value=0.014 Score=57.50 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++.++.|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998643
No 314
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.70 E-value=0.013 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 315
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.70 E-value=0.016 Score=53.47 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998753
No 316
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.69 E-value=0.037 Score=61.52 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=23.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455568999999999999999998754
No 317
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.66 E-value=0.015 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999864
No 318
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.65 E-value=0.015 Score=54.12 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 319
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.64 E-value=0.016 Score=53.45 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 320
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.61 E-value=0.016 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 321
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.60 E-value=0.016 Score=59.40 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 322
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.60 E-value=0.017 Score=56.23 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 323
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.60 E-value=0.016 Score=60.45 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.60 E-value=0.019 Score=55.33 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+-+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998644
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.57 E-value=0.016 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
No 326
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.57 E-value=0.016 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 327
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.55 E-value=0.017 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 328
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.54 E-value=0.019 Score=54.57 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998755
No 329
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.53 E-value=0.014 Score=55.16 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 330
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.53 E-value=0.015 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999754
No 331
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.52 E-value=0.02 Score=53.49 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++++|.|+.||||||+-+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
No 332
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.18 Score=54.84 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++-.=+.|.||+|+|||+|.++||+...
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 3334488999999999999999998653
No 333
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.51 E-value=0.022 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998743
No 334
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.48 E-value=0.02 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
No 335
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.46 E-value=0.015 Score=55.06 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
No 336
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.46 E-value=0.017 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 337
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.46 E-value=0.19 Score=50.12 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=44.0
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC---------ccHHHHHhCCeEEEEe
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ---------PSSRVYQMFDKVLVLS 292 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~---------~~~~i~~~~D~v~lL~ 292 (679)
.+.+++++||----.| +.+.++.+++.|+.||++-++ +..++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999876643 666666666689999999999 8888999999999875
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.41 E-value=0.022 Score=57.65 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 339
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.40 E-value=0.02 Score=55.77 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
No 340
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.40 E-value=0.017 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999885
No 341
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.38 E-value=0.022 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998744
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.37 E-value=0.017 Score=56.78 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998654
No 343
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.37 E-value=0.017 Score=54.54 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999999864
No 344
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.36 E-value=0.019 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 345
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.35 E-value=0.019 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
No 346
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.33 E-value=0.02 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 347
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.31 E-value=0.022 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.30 E-value=0.022 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
No 349
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.29 E-value=0.02 Score=52.69 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 350
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.28 E-value=0.018 Score=54.15 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999853
No 351
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.26 E-value=0.019 Score=54.45 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+++|+|++||||||+-+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998754
No 352
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.25 E-value=0.021 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 353
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.25 E-value=0.021 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.20 E-value=0.022 Score=52.17 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.17 E-value=0.027 Score=56.49 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++-.++|.||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999998543
No 356
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.13 E-value=0.014 Score=54.64 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
-++|+|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999875
No 357
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.023 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 358
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.10 E-value=0.023 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999753
No 359
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.09 E-value=0.024 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999754
No 360
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.09 E-value=0.026 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 368999999999999999998654
No 361
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.09 E-value=0.025 Score=58.79 Aligned_cols=25 Identities=48% Similarity=0.694 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.| .++|+|++|+|||||+|.|.|..
T Consensus 7 ~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 44 58999999999999999999853
No 362
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.07 E-value=0.021 Score=52.92 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 363
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.02 E-value=0.025 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 364
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.01 E-value=0.024 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 365
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.98 E-value=0.028 Score=54.45 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
.-+++|.|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 366
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.97 E-value=0.032 Score=52.10 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+..+.|.||+|+|||||++.++....
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987653
No 367
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.95 E-value=0.028 Score=56.52 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
No 368
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.94 E-value=0.022 Score=58.13 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||+|.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
No 369
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.93 E-value=0.025 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
No 370
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.90 E-value=0.024 Score=60.89 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=36.6
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 235 NPSLLILDEPTSGLD---STAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 235 ~P~lllLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.|.++++||-=.=++ +.....+.+.+++.++.|..++++||.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 478999999877774 667778888888888888999999998764
No 371
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.90 E-value=0.026 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
No 372
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.90 E-value=0.47 Score=51.81 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999997654
No 373
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.88 E-value=0.027 Score=53.88 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998854
No 374
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.87 E-value=0.025 Score=57.35 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
No 375
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.86 E-value=0.028 Score=52.86 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.=-++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998754
No 376
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.83 E-value=0.028 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999876653
No 377
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.83 E-value=0.025 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 378
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.82 E-value=0.028 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 379
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.80 E-value=0.023 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 380
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.79 E-value=0.032 Score=55.00 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 381
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.78 E-value=0.026 Score=60.41 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 382
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.77 E-value=0.029 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999854
No 383
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.75 E-value=0.28 Score=50.71 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=29.0
Q ss_pred CCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 235 NPSLLILDEPTSGLD-STAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 235 ~P~lllLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
+++++++||.- .|. ......+.+.+.+.. .+..+|++++++.
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 78999999984 344 556666666666543 3567888887754
No 384
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.73 E-value=0.03 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 385
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.72 E-value=0.027 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 386
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.71 E-value=0.028 Score=56.51 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 387
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.70 E-value=0.018 Score=59.60 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=19.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
No 388
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.67 E-value=0.027 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 389
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.028 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 390
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.66 E-value=0.031 Score=52.17 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 391
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.64 E-value=0.033 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998854
No 392
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.62 E-value=0.03 Score=55.86 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=22.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+..+|.++.+.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999987654
No 393
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.62 E-value=0.032 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
|-.+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.59 E-value=0.033 Score=52.65 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 395
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.58 E-value=0.031 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
No 396
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.58 E-value=0.034 Score=56.35 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 397
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.57 E-value=0.0075 Score=58.67 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=30.9
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7887777776666542 23678888888754
No 398
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.55 E-value=0.019 Score=55.81 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.54 E-value=0.032 Score=57.24 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G 126 (679)
.+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 400
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.53 E-value=0.042 Score=54.12 Aligned_cols=28 Identities=43% Similarity=0.644 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-+|.++.+.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987664
No 401
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.53 E-value=0.032 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
No 402
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.52 E-value=0.034 Score=53.21 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 403
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.48 E-value=0.035 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 404
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.46 E-value=0.036 Score=51.67 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 405
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.45 E-value=0.031 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999854
No 406
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.43 E-value=0.033 Score=56.92 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|.+|+|||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
No 407
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.42 E-value=0.033 Score=57.51 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|+.|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 408
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.42 E-value=0.048 Score=57.58 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.++.|+||+|||||||-..|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56789999999999999999999765
No 409
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.41 E-value=0.036 Score=52.47 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|+.|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 410
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.40 E-value=0.044 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++..++.|+||+||||+|.-+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455789999999999999999998654
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.39 E-value=0.033 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
No 412
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.38 E-value=0.07 Score=50.89 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=28.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+..+|..-..+ .|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45666666665 588999999999999999988875
No 413
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.037 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.033 Score=52.86 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 415
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.37 E-value=0.037 Score=52.67 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 416
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.37 E-value=0.037 Score=54.37 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 417
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.36 E-value=0.039 Score=58.93 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~ 127 (679)
-.++|+|.+|+|||||+|.|+|.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999984
No 418
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.36 E-value=0.036 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999863
No 419
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.36 E-value=0.035 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 420
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.36 E-value=0.028 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998864
No 421
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.35 E-value=0.037 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998853
No 422
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.35 E-value=0.042 Score=56.40 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G 126 (679)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 423
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.35 E-value=0.033 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.34 E-value=0.037 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998643
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.32 E-value=0.038 Score=52.46 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 426
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.32 E-value=0.038 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 427
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.31 E-value=0.038 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998753
No 428
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.30 E-value=0.046 Score=54.12 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998654
No 429
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.29 E-value=0.042 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 430
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.22 E-value=0.04 Score=51.39 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+..+.|.||+|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999987653
No 431
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.21 E-value=0.033 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
No 432
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.19 E-value=0.036 Score=53.59 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988743
No 433
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.17 E-value=0.033 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 434
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.11 E-value=0.046 Score=59.40 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.+++.|+|++||||||+.+.|+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999998643
No 435
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.08 E-value=0.047 Score=52.06 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 436
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.06 E-value=0.039 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 437
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.03 E-value=0.047 Score=54.73 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999988664
No 438
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.02 E-value=0.046 Score=51.82 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47999999999999999988743
No 439
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.96 E-value=0.046 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998643
No 440
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.95 E-value=0.054 Score=59.61 Aligned_cols=34 Identities=18% Similarity=0.404 Sum_probs=28.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.+ ..+-+|+..+|+||+|+|||||++.|++..
T Consensus 142 ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 142 VDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 3444 456689999999999999999999998754
No 441
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.92 E-value=0.04 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 442
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.91 E-value=0.047 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 443
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.91 E-value=0.042 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.91 E-value=0.032 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 445
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.90 E-value=0.05 Score=57.47 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999765
No 446
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.90 E-value=0.059 Score=56.33 Aligned_cols=25 Identities=40% Similarity=0.674 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999764
No 447
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.89 E-value=0.046 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 448
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.82 E-value=0.041 Score=53.60 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 449
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.79 E-value=0.068 Score=52.68 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=38.5
Q ss_pred hhCCCeEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHH---------HHHhCCeEEEEe
Q 005754 233 LINPSLLILDEPTS----GLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSR---------VYQMFDKVLVLS 292 (679)
Q Consensus 233 ~~~P~lllLDEPts----gLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~---------i~~~~D~v~lL~ 292 (679)
-.+|+++++|--+. .-|.....+++..|++++++ |.+++++.|..... +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34788888885432 11445566777888888764 99999999864221 234677777764
No 450
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.77 E-value=0.044 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999763
No 451
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.73 E-value=0.056 Score=53.44 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|.++.+.|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999998765
No 452
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.72 E-value=0.057 Score=53.21 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|.++.+-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988664
No 453
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.72 E-value=0.046 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999853
No 454
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.70 E-value=0.13 Score=61.05 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+.|.||+|+|||+|.+.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998664
No 455
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.68 E-value=0.067 Score=53.15 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|.++.+.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987654
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.68 E-value=0.044 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++.+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987653
No 457
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.68 E-value=0.43 Score=61.07 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=25.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
=+++|+.+.|.||+|+|||||...++.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999988865
No 458
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.67 E-value=0.06 Score=53.54 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997653
No 459
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.66 E-value=0.05 Score=54.98 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 460
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.52 E-value=0.031 Score=54.19 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 461
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.49 E-value=0.053 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 462
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.48 E-value=0.063 Score=52.60 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 463
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.47 E-value=0.053 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 464
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.42 E-value=0.068 Score=52.34 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999654
No 465
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.41 E-value=0.019 Score=60.12 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=32.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
+++++++|| ...|++.....+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999988888888877543 345666776654
No 466
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.38 E-value=0.067 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++.|+||+|||||||-+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
No 467
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.26 E-value=0.065 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998854
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.19 E-value=0.063 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.++|+|++|+|||||++-+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 469
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.12 E-value=0.062 Score=51.60 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998743
No 470
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.09 E-value=0.044 Score=51.69 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
-++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999965
No 471
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.06 E-value=0.065 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998654
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.01 E-value=0.032 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 473
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.91 E-value=0.093 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999754
No 474
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.87 E-value=0.067 Score=58.75 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005754 222 ERKRVSIAHEMLINPSLLILDEPT-SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 222 erqRv~IA~aL~~~P~lllLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~ 276 (679)
|++....+...+.+++++++.... .++.... ..+.+.|+ +.++.+|++.+.
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK 140 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNK 140 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEEC
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEEC
Confidence 566666777777888876655444 4555554 44555543 457777777765
No 475
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.76 E-value=0.071 Score=51.31 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 476
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.74 E-value=0.08 Score=51.48 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 477
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.70 E-value=0.37 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999865
No 478
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.67 E-value=0.091 Score=50.34 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=37.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc---------HHHHHhCCeEEEEe
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS---------SRVYQMFDKVLVLS 292 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~---------~~i~~~~D~v~lL~ 292 (679)
+++++++||-=- +|+ .+++.|+++++.|..|+++-++.. ..+...+|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999643 443 366777878778999999988432 44566788886654
No 479
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.63 E-value=0.075 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.39 E-value=0.24 Score=54.86 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=53.1
Q ss_pred CcccCHHHHHHHHHHHH--Hhh--------------CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 215 IRGISGGERKRVSIAHE--MLI--------------NP-SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~a--L~~--------------~P-~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
.+++||||+|-.-+|.+ ++. ++ .++++||. +-+|...+...++.++++ |.-+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 56899999996544433 322 12 57999999 999999999999999976 7777777654
Q ss_pred cHHHHHhCCeEEEEe
Q 005754 278 SSRVYQMFDKVLVLS 292 (679)
Q Consensus 278 ~~~i~~~~D~v~lL~ 292 (679)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2556778888764
No 481
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.32 E-value=0.099 Score=56.46 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..+++|+||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999998754
No 482
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.29 E-value=0.14 Score=54.15 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..-.++|+|++|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445899999999999999999987653
No 483
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.23 E-value=0.03 Score=66.16 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=28.9
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.++.+.+|+.++|.||||+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 355678999999999999999999999998763
No 484
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.22 E-value=0.098 Score=47.72 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
+..+|++||.- .|++..+..+.+.|... ..+..+|++|+.+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 45689999984 68888888888888332 224567777776543
No 485
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.14 E-value=0.13 Score=54.00 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+-+.+|..+.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999875
No 486
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.95 E-value=0.11 Score=53.18 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++.-+.|.||+|+|||||.+.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999987653
No 487
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.72 E-value=0.057 Score=54.34 Aligned_cols=27 Identities=30% Similarity=0.722 Sum_probs=22.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
....| +.|.||+|+|||||.++|+...
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33444 7799999999999999999854
No 488
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.71 E-value=0.12 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+||+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998654
No 489
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.54 E-value=0.14 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..-+.|.||+|+|||||.+.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345578899999999999999999753
No 490
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.52 E-value=0.14 Score=52.65 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.++++|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 468999999999999999999865
No 491
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.46 E-value=0.092 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 492
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.43 E-value=0.15 Score=52.95 Aligned_cols=24 Identities=42% Similarity=0.703 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998875
No 493
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.30 E-value=0.12 Score=55.83 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 192 IAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 192 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
.++++++.++.... ...+|.+|.+++.-..-+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45667777766542 125899998888777666778988887
No 494
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.74 E-value=0.053 Score=51.94 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 489999999999999998875
No 495
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.23 E-value=0.17 Score=49.36 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
|.++++=|+-||||||+.+.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999998664
No 496
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.19 E-value=0.12 Score=56.24 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|.|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 497
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.14 E-value=0.23 Score=51.76 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=29.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
.....+|+.-..+ .|.-++|.|+||+|||||.-.|..
T Consensus 133 a~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 133 ATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred hhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4456788865555 688899999999999999877754
No 498
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.13 E-value=0.036 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 499
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.10 E-value=0.098 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHH-HhcC
Q 005754 106 ILAILGPSGSGKSTMLNV-LAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~-L~G~ 127 (679)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 6554
No 500
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.91 E-value=0.15 Score=53.64 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|..+.|.||+|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999998654
Done!