Query 005755
Match_columns 679
No_of_seqs 519 out of 3562
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 13:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 2.1E-81 4.6E-86 615.4 17.2 285 325-633 3-287 (303)
2 KOG0374 Serine/threonine speci 100.0 2.5E-77 5.4E-82 633.1 26.9 321 325-664 9-330 (331)
3 KOG0373 Serine/threonine speci 100.0 6.8E-74 1.5E-78 553.7 17.2 286 325-634 6-292 (306)
4 PTZ00480 serine/threonine-prot 100.0 3.9E-72 8.5E-77 591.7 29.8 294 325-634 11-304 (320)
5 cd07420 MPP_RdgC Drosophila me 100.0 2.8E-71 6.1E-76 586.1 31.2 285 324-628 6-320 (321)
6 cd07419 MPP_Bsu1_C Arabidopsis 100.0 3.3E-71 7.2E-76 587.8 30.6 303 328-630 1-311 (311)
7 PTZ00244 serine/threonine-prot 100.0 1.1E-70 2.3E-75 577.5 28.8 290 324-629 3-292 (294)
8 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 1.6E-70 3.4E-75 574.8 29.8 283 325-631 2-284 (285)
9 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.3E-70 2.8E-75 577.6 28.5 291 325-631 2-292 (293)
10 PTZ00239 serine/threonine prot 100.0 4.9E-70 1.1E-74 574.2 30.5 286 325-634 3-289 (303)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 7.3E-69 1.6E-73 568.8 30.8 292 320-635 11-308 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 3.7E-68 8E-73 562.3 31.8 286 326-634 4-300 (305)
13 smart00156 PP2Ac Protein phosp 100.0 5.6E-68 1.2E-72 553.2 28.8 269 348-630 1-269 (271)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 2.9E-65 6.4E-70 547.5 31.5 300 321-630 8-365 (377)
15 KOG0371 Serine/threonine prote 100.0 3.7E-65 8.1E-70 503.8 12.9 286 325-634 20-305 (319)
16 KOG0375 Serine-threonine phosp 100.0 3.1E-64 6.7E-69 514.9 11.9 276 347-635 60-346 (517)
17 KOG0377 Protein serine/threoni 100.0 8.3E-54 1.8E-58 447.4 14.1 283 325-628 121-429 (631)
18 KOG0376 Serine-threonine phosp 100.0 6.9E-48 1.5E-52 413.6 15.0 274 348-635 183-462 (476)
19 cd00144 MPP_PPP_family phospho 100.0 1.7E-32 3.7E-37 278.3 19.9 218 378-616 1-224 (225)
20 cd07425 MPP_Shelphs Shewanella 99.9 2.1E-23 4.5E-28 210.3 14.2 185 378-601 1-196 (208)
21 PRK13625 bis(5'-nucleosyl)-tet 99.9 3.3E-23 7.1E-28 214.0 12.2 131 376-508 2-146 (245)
22 cd07422 MPP_ApaH Escherichia c 99.9 2.9E-22 6.2E-27 207.5 7.4 130 377-519 1-135 (257)
23 cd07413 MPP_PA3087 Pseudomonas 99.9 7.1E-21 1.5E-25 193.9 16.0 123 378-505 2-143 (222)
24 cd07423 MPP_PrpE Bacillus subt 99.9 2.1E-21 4.5E-26 199.3 11.6 129 376-507 2-142 (234)
25 PRK00166 apaH diadenosine tetr 99.8 1.4E-20 3.1E-25 196.9 16.9 125 376-513 2-131 (275)
26 TIGR00668 apaH bis(5'-nucleosy 99.8 8E-21 1.7E-25 197.2 11.7 128 376-517 2-135 (279)
27 PRK11439 pphA serine/threonine 99.8 3.3E-20 7.2E-25 188.4 11.9 120 375-505 17-146 (218)
28 cd07424 MPP_PrpA_PrpB PrpA and 99.8 1.6E-19 3.5E-24 181.8 13.1 147 375-539 1-157 (207)
29 cd07421 MPP_Rhilphs Rhilph pho 99.8 9.3E-20 2E-24 189.4 10.9 82 376-457 3-85 (304)
30 PHA02239 putative protein phos 99.8 3.7E-19 8.1E-24 182.4 13.4 140 376-538 2-184 (235)
31 PRK09968 serine/threonine-spec 99.8 1.5E-18 3.3E-23 176.3 11.1 120 375-505 15-144 (218)
32 KOG0379 Kelch repeat-containin 99.7 1.1E-16 2.3E-21 180.8 16.3 137 5-160 117-254 (482)
33 KOG4693 Uncharacterized conser 99.7 3.1E-16 6.8E-21 157.5 10.4 147 3-165 133-286 (392)
34 KOG4441 Proteins containing BT 99.6 1.2E-15 2.6E-20 175.1 14.8 151 3-179 325-478 (571)
35 KOG0379 Kelch repeat-containin 99.6 4.3E-15 9.3E-20 167.8 16.5 159 2-189 63-222 (482)
36 PLN02153 epithiospecifier prot 99.6 1.5E-14 3.2E-19 156.5 18.0 141 5-162 80-232 (341)
37 KOG4441 Proteins containing BT 99.6 6.1E-15 1.3E-19 169.3 15.5 134 5-164 375-508 (571)
38 PLN02153 epithiospecifier prot 99.6 2.1E-14 4.5E-19 155.4 18.4 139 3-160 26-172 (341)
39 PHA02713 hypothetical protein; 99.6 1.1E-14 2.3E-19 167.4 16.5 154 3-179 344-515 (557)
40 PHA02713 hypothetical protein; 99.6 1.4E-14 3E-19 166.5 17.0 150 4-179 297-466 (557)
41 PLN02193 nitrile-specifier pro 99.6 2.4E-14 5.2E-19 161.5 18.0 136 5-162 223-358 (470)
42 PLN02193 nitrile-specifier pro 99.6 3.2E-14 6.9E-19 160.5 18.6 139 3-161 169-308 (470)
43 TIGR03548 mutarot_permut cycli 99.6 5.8E-14 1.3E-18 150.7 17.7 136 2-163 65-202 (323)
44 PHA03098 kelch-like protein; P 99.5 5.1E-14 1.1E-18 161.2 16.0 133 4-162 336-471 (534)
45 KOG1230 Protein containing rep 99.5 2.4E-14 5.2E-19 151.4 11.9 144 11-173 79-232 (521)
46 KOG4693 Uncharacterized conser 99.5 2.7E-14 5.9E-19 143.7 11.0 141 2-160 80-229 (392)
47 PHA03098 kelch-like protein; P 99.5 9.9E-14 2.1E-18 158.8 17.1 133 5-163 289-422 (534)
48 PHA02790 Kelch-like protein; P 99.5 8.5E-14 1.8E-18 157.5 15.7 121 3-160 355-475 (480)
49 TIGR03548 mutarot_permut cycli 99.5 4.1E-13 8.8E-18 144.1 18.4 134 4-161 7-153 (323)
50 KOG1230 Protein containing rep 99.5 1.2E-13 2.7E-18 146.1 13.6 145 3-164 125-289 (521)
51 PHA02790 Kelch-like protein; P 99.5 4.4E-13 9.6E-18 151.6 16.3 124 6-161 267-390 (480)
52 TIGR03547 muta_rot_YjhT mutatr 99.4 2.3E-12 4.9E-17 139.5 16.1 131 3-153 56-223 (346)
53 TIGR03547 muta_rot_YjhT mutatr 99.4 5.2E-12 1.1E-16 136.7 16.8 134 5-164 12-185 (346)
54 KOG4152 Host cell transcriptio 99.3 6.9E-12 1.5E-16 135.4 12.5 139 2-156 202-364 (830)
55 PRK14131 N-acetylneuraminic ac 99.3 1.5E-11 3.3E-16 135.0 15.2 138 3-160 77-253 (376)
56 PRK14131 N-acetylneuraminic ac 99.3 3.1E-11 6.7E-16 132.5 16.3 125 3-141 132-289 (376)
57 KOG4152 Host cell transcriptio 99.2 2.9E-11 6.2E-16 130.7 10.9 152 9-179 90-267 (830)
58 PF00149 Metallophos: Calcineu 99.1 5.2E-10 1.1E-14 104.5 10.3 77 376-458 2-84 (200)
59 COG0639 ApaH Diadenosine tetra 99.0 6.7E-10 1.5E-14 103.5 7.5 147 453-606 2-155 (155)
60 cd00841 MPP_YfcE Escherichia c 98.7 3.1E-07 6.7E-12 87.8 15.8 59 376-452 1-59 (155)
61 PRK09453 phosphodiesterase; Pr 98.7 4.4E-08 9.6E-13 96.7 9.2 68 376-453 2-77 (182)
62 PF13964 Kelch_6: Kelch motif 98.7 3.5E-08 7.6E-13 76.5 6.5 46 52-100 1-46 (50)
63 PLN02772 guanylate kinase 98.7 1.2E-07 2.6E-12 103.3 11.7 90 47-156 19-109 (398)
64 PF12850 Metallophos_2: Calcin 98.7 3.5E-07 7.7E-12 86.8 13.2 60 376-453 2-61 (156)
65 PF07646 Kelch_2: Kelch motif; 98.6 1.2E-07 2.5E-12 73.4 6.0 46 52-100 1-48 (49)
66 TIGR00040 yfcE phosphoesterase 98.5 2E-06 4.2E-11 82.9 14.9 61 376-451 2-63 (158)
67 PF01344 Kelch_1: Kelch motif; 98.5 1.6E-07 3.4E-12 71.6 5.0 46 52-100 1-46 (47)
68 cd07379 MPP_239FB Homo sapiens 98.5 1E-06 2.2E-11 82.7 11.0 117 377-588 2-120 (135)
69 cd07397 MPP_DevT Myxococcus xa 98.4 1.8E-06 4E-11 88.6 12.3 113 376-507 2-160 (238)
70 PF13418 Kelch_4: Galactose ox 98.4 2.9E-07 6.2E-12 70.9 4.6 46 52-100 1-47 (49)
71 cd07388 MPP_Tt1561 Thermus the 98.4 2.3E-06 5E-11 87.5 12.3 70 376-452 6-75 (224)
72 cd00838 MPP_superfamily metall 98.4 3E-06 6.6E-11 76.5 11.3 117 378-588 1-119 (131)
73 PF13415 Kelch_3: Galactose ox 98.3 1.8E-06 3.9E-11 66.7 5.8 48 10-61 1-49 (49)
74 PF13415 Kelch_3: Galactose ox 98.2 2.5E-06 5.5E-11 65.8 5.9 48 62-130 1-49 (49)
75 PF13854 Kelch_5: Kelch motif 98.2 2.4E-06 5.3E-11 63.9 5.5 41 49-92 1-42 (42)
76 KOG2437 Muskelin [Signal trans 98.2 2.5E-06 5.5E-11 93.1 6.6 135 10-158 272-415 (723)
77 PF07646 Kelch_2: Kelch motif; 98.2 3.7E-06 8.1E-11 64.9 5.6 43 121-163 1-46 (49)
78 cd07394 MPP_Vps29 Homo sapiens 98.2 7.2E-05 1.6E-09 73.9 16.2 57 377-451 2-64 (178)
79 PF13964 Kelch_6: Kelch motif 98.1 5.3E-06 1.1E-10 64.2 5.7 44 121-164 1-45 (50)
80 cd07392 MPP_PAE1087 Pyrobaculu 98.1 8E-05 1.7E-09 72.8 14.5 65 377-453 1-66 (188)
81 PF13854 Kelch_5: Kelch motif 98.0 8.5E-06 1.8E-10 61.0 5.2 37 121-157 4-42 (42)
82 COG3055 Uncharacterized protei 98.0 2.5E-05 5.5E-10 82.9 9.2 114 5-143 41-158 (381)
83 PLN02772 guanylate kinase 97.9 5.6E-05 1.2E-09 82.7 10.3 83 2-92 27-110 (398)
84 cd07403 MPP_TTHA0053 Thermus t 97.9 0.00014 3.1E-09 67.9 11.6 56 378-450 1-56 (129)
85 smart00612 Kelch Kelch domain. 97.8 2.4E-05 5.2E-10 58.7 4.7 47 64-132 1-47 (47)
86 PF01344 Kelch_1: Kelch motif; 97.8 1.4E-05 3.1E-10 60.6 3.2 40 121-160 1-41 (47)
87 cd07399 MPP_YvnB Bacillus subt 97.7 0.0026 5.5E-08 64.7 18.8 71 559-630 135-213 (214)
88 PRK05340 UDP-2,3-diacylglucosa 97.7 0.00011 2.4E-09 75.9 8.5 207 376-620 2-231 (241)
89 cd07400 MPP_YydB Bacillus subt 97.7 0.00076 1.6E-08 63.5 13.4 29 560-588 101-129 (144)
90 PF13418 Kelch_4: Galactose ox 97.7 3.1E-05 6.6E-10 59.6 3.2 42 121-162 1-44 (49)
91 KOG0376 Serine-threonine phosp 97.7 1.1E-05 2.5E-10 88.6 1.0 238 347-606 14-299 (476)
92 cd07404 MPP_MS158 Microscilla 97.6 5E-05 1.1E-09 73.5 4.2 67 377-452 1-68 (166)
93 PRK11340 phosphodiesterase Yae 97.5 0.00021 4.5E-09 75.3 7.6 69 376-452 51-125 (271)
94 cd07385 MPP_YkuE_C Bacillus su 97.4 0.00021 4.6E-09 72.2 6.1 69 376-452 3-76 (223)
95 COG0622 Predicted phosphoester 97.3 0.0084 1.8E-07 59.0 15.9 64 376-453 3-66 (172)
96 TIGR01854 lipid_A_lpxH UDP-2,3 97.3 0.00049 1.1E-08 70.7 7.4 206 377-620 1-229 (231)
97 COG3055 Uncharacterized protei 97.3 0.0013 2.9E-08 70.2 10.2 129 5-153 87-251 (381)
98 TIGR03729 acc_ester putative p 97.2 0.00076 1.6E-08 69.5 7.2 68 376-452 1-74 (239)
99 cd07395 MPP_CSTP1 Homo sapiens 97.2 0.025 5.5E-07 58.9 18.4 59 561-621 195-254 (262)
100 cd07390 MPP_AQ1575 Aquifex aeo 97.1 0.0019 4.1E-08 63.0 8.6 40 410-454 45-84 (168)
101 smart00612 Kelch Kelch domain. 97.1 0.0008 1.7E-08 50.3 4.6 47 12-63 1-47 (47)
102 cd00840 MPP_Mre11_N Mre11 nucl 97.0 0.0014 3.1E-08 65.9 7.2 73 376-454 1-91 (223)
103 PF03089 RAG2: Recombination a 97.0 0.0039 8.5E-08 64.7 10.1 114 12-141 40-174 (337)
104 KOG2437 Muskelin [Signal trans 97.0 0.0003 6.5E-09 77.3 1.9 94 48-160 256-359 (723)
105 PRK04036 DNA polymerase II sma 97.0 0.0032 7E-08 72.1 10.0 117 375-504 244-388 (504)
106 cd07396 MPP_Nbla03831 Homo sap 97.0 0.0023 5E-08 67.2 8.1 73 376-454 2-88 (267)
107 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.9 0.0019 4E-08 67.8 6.8 70 377-452 1-86 (262)
108 cd07398 MPP_YbbF-LpxH Escheric 96.9 0.0023 5E-08 64.3 7.3 29 559-587 176-204 (217)
109 cd07391 MPP_PF1019 Pyrococcus 96.8 0.0034 7.4E-08 61.4 7.7 44 410-453 44-89 (172)
110 KOG0918 Selenium-binding prote 96.8 0.00021 4.6E-09 76.7 -1.3 211 408-632 48-264 (476)
111 PHA02546 47 endonuclease subun 96.7 0.0033 7.2E-08 68.4 7.4 71 376-452 2-89 (340)
112 cd07402 MPP_GpdQ Enterobacter 96.7 0.0059 1.3E-07 62.4 8.3 69 376-452 1-83 (240)
113 COG1409 Icc Predicted phosphoh 96.6 0.085 1.8E-06 55.0 16.8 73 376-456 2-82 (301)
114 TIGR00619 sbcd exonuclease Sbc 96.5 0.0064 1.4E-07 63.5 7.1 71 376-452 2-88 (253)
115 cd08165 MPP_MPPE1 human MPPE1 96.4 0.0044 9.5E-08 59.9 5.4 44 410-453 41-90 (156)
116 PRK10966 exonuclease subunit S 96.4 0.0089 1.9E-07 66.7 8.2 43 410-453 42-88 (407)
117 TIGR00024 SbcD_rel_arch putati 96.3 0.012 2.6E-07 60.4 8.0 40 410-453 61-103 (225)
118 PRK11148 cyclic 3',5'-adenosin 96.3 0.011 2.4E-07 62.2 8.0 69 376-452 16-98 (275)
119 cd07386 MPP_DNA_pol_II_small_a 96.3 0.027 5.8E-07 58.2 10.5 42 410-453 38-95 (243)
120 cd00839 MPP_PAPs purple acid p 96.2 0.028 6.1E-07 59.4 10.4 37 560-596 181-217 (294)
121 cd07393 MPP_DR1119 Deinococcus 96.2 0.012 2.5E-07 60.6 7.2 46 560-607 181-229 (232)
122 cd07383 MPP_Dcr2 Saccharomyces 96.2 0.017 3.8E-07 57.6 8.1 41 410-450 44-87 (199)
123 cd08163 MPP_Cdc1 Saccharomyces 95.9 0.15 3.3E-06 53.4 14.0 36 547-582 188-226 (257)
124 COG2129 Predicted phosphoester 95.8 1.2 2.6E-05 45.4 19.2 203 376-620 5-217 (226)
125 TIGR00583 mre11 DNA repair pro 95.8 0.029 6.3E-07 62.4 8.3 72 376-453 5-124 (405)
126 cd07401 MPP_TMEM62_N Homo sapi 95.5 0.03 6.5E-07 58.5 6.8 27 564-590 190-216 (256)
127 cd08164 MPP_Ted1 Saccharomyces 95.1 0.064 1.4E-06 53.7 7.4 65 382-451 24-110 (193)
128 COG2908 Uncharacterized protei 95.1 0.096 2.1E-06 53.7 8.7 196 379-622 2-229 (237)
129 cd07384 MPP_Cdc1_like Saccharo 95.0 0.053 1.2E-06 53.2 6.5 44 410-453 48-101 (171)
130 cd07380 MPP_CWF19_N Schizosacc 94.8 0.064 1.4E-06 51.6 6.2 68 378-450 1-68 (150)
131 cd08166 MPP_Cdc1_like_1 unchar 94.7 0.039 8.4E-07 55.3 4.6 42 410-451 45-92 (195)
132 COG1408 Predicted phosphohydro 94.5 0.089 1.9E-06 55.9 7.0 71 375-453 45-119 (284)
133 PF07250 Glyoxal_oxid_N: Glyox 94.3 0.13 2.9E-06 53.3 7.7 87 2-105 120-213 (243)
134 cd00845 MPP_UshA_N_like Escher 93.8 0.12 2.7E-06 53.3 6.3 66 376-451 2-81 (252)
135 COG1407 Predicted ICC-like pho 93.6 0.24 5.2E-06 50.9 7.8 68 374-453 19-111 (235)
136 COG4186 Predicted phosphoester 92.3 0.54 1.2E-05 45.2 7.6 44 410-457 48-91 (186)
137 COG1311 HYS2 Archaeal DNA poly 91.6 1.7 3.7E-05 48.9 11.6 199 376-619 227-460 (481)
138 PF07250 Glyoxal_oxid_N: Glyox 91.5 0.63 1.4E-05 48.4 7.8 63 6-72 73-138 (243)
139 PF14582 Metallophos_3: Metall 90.7 0.3 6.4E-06 49.9 4.3 73 375-453 6-103 (255)
140 PLN02533 probable purple acid 90.5 0.42 9.1E-06 53.8 5.8 25 561-585 311-335 (427)
141 COG0420 SbcD DNA repair exonuc 90.4 0.81 1.7E-05 50.7 7.9 44 410-453 43-89 (390)
142 cd07410 MPP_CpdB_N Escherichia 90.4 0.45 9.7E-06 50.1 5.7 21 563-583 208-229 (277)
143 PF08321 PPP5: PPP5 TPR repeat 89.1 1.4 3E-05 39.1 6.8 53 311-373 43-95 (95)
144 KOG3662 Cell division control 87.5 1.1 2.4E-05 49.6 6.3 57 390-451 81-143 (410)
145 cd07378 MPP_ACP5 Homo sapiens 86.4 1.4 3.1E-05 46.0 6.3 24 561-584 190-213 (277)
146 cd07387 MPP_PolD2_C PolD2 (DNA 84.7 32 0.0007 36.1 15.2 50 574-627 205-256 (257)
147 cd07412 MPP_YhcR_N Bacillus su 84.7 1.3 2.9E-05 47.1 5.0 66 376-451 2-87 (288)
148 PF12768 Rax2: Cortical protei 84.3 13 0.00029 39.5 12.3 121 15-159 2-127 (281)
149 cd07408 MPP_SA0022_N Staphyloc 84.0 2 4.4E-05 44.7 6.0 65 376-451 2-81 (257)
150 PF06874 FBPase_2: Firmicute f 82.6 1.2 2.6E-05 51.5 3.8 69 560-630 507-585 (640)
151 cd07411 MPP_SoxB_N Thermus the 81.2 3.2 7E-05 43.4 6.2 35 411-451 55-94 (264)
152 cd00842 MPP_ASMase acid sphing 78.3 4.5 9.7E-05 42.8 6.3 45 410-454 71-124 (296)
153 TIGR01640 F_box_assoc_1 F-box 73.5 72 0.0016 32.2 13.5 121 8-158 3-129 (230)
154 PRK09419 bifunctional 2',3'-cy 73.3 4.7 0.0001 51.2 5.6 66 376-451 662-735 (1163)
155 cd07409 MPP_CD73_N CD73 ecto-5 71.7 9.5 0.00021 40.3 6.6 24 560-583 193-217 (281)
156 PF08268 FBA_3: F-box associat 66.4 64 0.0014 29.6 10.3 86 7-98 2-88 (129)
157 KOG2476 Uncharacterized conser 66.4 12 0.00027 41.9 6.1 71 374-449 5-75 (528)
158 PF04042 DNA_pol_E_B: DNA poly 65.4 8 0.00017 38.7 4.3 72 377-454 1-93 (209)
159 cd07406 MPP_CG11883_N Drosophi 64.3 13 0.00029 38.6 5.9 57 385-451 21-82 (257)
160 KOG3325 Membrane coat complex 63.8 26 0.00055 33.8 6.9 104 377-523 3-108 (183)
161 cd07405 MPP_UshA_N Escherichia 62.5 12 0.00025 39.8 5.0 19 566-584 200-221 (285)
162 PF03089 RAG2: Recombination a 61.6 20 0.00044 38.0 6.4 62 11-73 102-175 (337)
163 PF07893 DUF1668: Protein of u 57.6 81 0.0018 34.4 10.7 82 7-98 114-215 (342)
164 COG0737 UshA 5'-nucleotidase/2 56.5 16 0.00034 42.2 5.2 69 375-451 27-114 (517)
165 COG3855 Fbp Uncharacterized pr 55.3 13 0.00028 41.7 3.9 57 560-617 514-580 (648)
166 TIGR01640 F_box_assoc_1 F-box 53.4 2.5E+02 0.0054 28.2 13.9 103 29-153 71-174 (230)
167 cd07407 MPP_YHR202W_N Saccharo 52.5 22 0.00047 37.9 5.0 38 410-452 53-97 (282)
168 KOG2863 RNA lariat debranching 51.8 19 0.00041 39.3 4.4 72 376-453 2-89 (456)
169 cd08162 MPP_PhoA_N Synechococc 46.4 31 0.00067 37.2 5.1 69 377-451 3-90 (313)
170 PTZ00235 DNA polymerase epsilo 46.0 63 0.0014 34.5 7.2 76 375-452 28-122 (291)
171 TIGR00282 metallophosphoestera 41.5 57 0.0012 34.5 6.0 67 376-452 2-71 (266)
172 KOG1432 Predicted DNA repair e 41.3 33 0.00071 37.4 4.2 44 410-453 103-148 (379)
173 PRK11138 outer membrane biogen 41.2 5E+02 0.011 28.5 13.9 105 7-156 66-179 (394)
174 PRK09419 bifunctional 2',3'-cy 40.1 37 0.0008 43.3 5.2 23 561-583 256-279 (1163)
175 COG1768 Predicted phosphohydro 40.1 55 0.0012 32.6 5.1 40 410-453 46-87 (230)
176 PRK09420 cpdB bifunctional 2', 40.0 44 0.00094 39.9 5.5 69 373-451 24-121 (649)
177 TIGR01390 CycNucDiestase 2',3' 39.6 43 0.00092 39.8 5.3 66 376-451 4-98 (626)
178 PF12768 Rax2: Cortical protei 38.1 94 0.002 33.1 7.1 58 83-159 17-76 (281)
179 PRK11138 outer membrane biogen 37.0 3.4E+02 0.0074 29.8 11.7 30 57-96 330-361 (394)
180 PF09637 Med18: Med18 protein; 35.2 41 0.00088 35.1 3.8 41 560-603 139-179 (250)
181 TIGR01530 nadN NAD pyrophospha 34.8 71 0.0015 37.3 6.1 37 410-451 52-93 (550)
182 KOG2679 Purple (tartrate-resis 32.5 33 0.00072 36.3 2.5 69 376-452 45-126 (336)
183 PRK05583 ribosomal protein L7A 31.5 45 0.00097 30.1 2.9 68 553-621 14-90 (104)
184 PF07893 DUF1668: Protein of u 30.9 3.3E+02 0.0071 29.7 10.1 57 57-141 71-127 (342)
185 cd07382 MPP_DR1281 Deinococcus 30.9 1.2E+02 0.0026 31.8 6.4 66 376-451 1-69 (255)
186 KOG3339 Predicted glycosyltran 30.8 1.7E+02 0.0037 29.4 6.9 92 409-505 40-144 (211)
187 PRK09558 ushA bifunctional UDP 30.6 67 0.0015 37.4 5.0 18 566-583 236-256 (551)
188 PRK11907 bifunctional 2',3'-cy 28.5 87 0.0019 38.4 5.5 67 375-451 116-212 (814)
189 PTZ00422 glideosome-associated 28.0 71 0.0015 35.7 4.3 23 563-585 239-261 (394)
190 PF06874 FBPase_2: Firmicute f 27.3 93 0.002 36.6 5.2 40 410-454 187-226 (640)
191 PF12641 Flavodoxin_3: Flavodo 25.7 2.4E+02 0.0051 27.4 7.0 64 378-444 2-72 (160)
192 TIGR03075 PQQ_enz_alc_DH PQQ-d 23.4 1.2E+03 0.026 27.0 14.2 116 7-156 66-190 (527)
193 KOG3947 Phosphoesterases [Gene 22.8 64 0.0014 34.2 2.6 62 376-453 63-127 (305)
194 KOG2055 WD40 repeat protein [G 22.8 4.1E+02 0.0089 30.3 8.8 74 6-96 264-339 (514)
195 COG0634 Hpt Hypoxanthine-guani 21.7 7.6E+02 0.017 24.6 9.6 92 345-443 9-125 (178)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-81 Score=615.39 Aligned_cols=285 Identities=41% Similarity=0.721 Sum_probs=272.7
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 005755 325 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 404 (679)
Q Consensus 325 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~ 404 (679)
+++.|+.|.+.. .+.+.++..||.++.+||.+|++|+.++.|++|||||||||+||+.+|+..|-++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 578899998863 578999999999999999999999999999999999999999999999999988876
Q ss_pred CCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhh
Q 005755 405 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 484 (679)
Q Consensus 405 ~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 484 (679)
+|+|||||||||-+|+|+++||++||++||++|+|||||||++.++..|||++||.+|||. ..+|+.+.++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~---~~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS---ANVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCC---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999984 58999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 005755 485 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 564 (679)
Q Consensus 485 ~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~ 564 (679)
++||++|+|+++|||||||+||++.+++||+.+.|-.+++.++ .++|||||||.+ ..||.-++||+| +.||.+++
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee---~~g~~~SPRGaG-ylFG~dvv 218 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEE---GPGWGLSPRGAG-YLFGEDVV 218 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCccc---CCCcccCCCCcc-ccccHHHH
Confidence 9999999999999999999999999999999999999999877 799999999986 459999999999 78999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecCCCC
Q 005755 565 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPP 633 (679)
Q Consensus 565 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~~~~ 633 (679)
++||+.||+++|+|+||.|++||++.++++|+|||||||||+.++|.||||.+++++...|++|...+.
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~~ 287 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAPQ 287 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHHheeeccccCcceEeeecchh
Confidence 999999999999999999999999999999999999999999999999999999999999999987653
No 2
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.5e-77 Score=633.14 Aligned_cols=321 Identities=48% Similarity=0.843 Sum_probs=287.4
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhC-CCCCC
Q 005755 325 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYG-FPSTA 403 (679)
Q Consensus 325 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g-~~~~~ 403 (679)
++++|..++..............|+++||.+||..+.++|..+|+++++++||+|||||||||.||+++|+..| +|+..
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~ 88 (331)
T KOG0374|consen 9 LDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQ 88 (331)
T ss_pred HHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcc
Confidence 56777777766544444444556999999999999999999999999999999999999999999999999999 88776
Q ss_pred CCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhh
Q 005755 404 GDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQL 483 (679)
Q Consensus 404 ~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~ 483 (679)
+|||||||||||++|+||++||+++|++||++|++||||||++.+|+.|||++||.++|++ ..+|+.|+++
T Consensus 89 ------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~~~ 159 (331)
T KOG0374|consen 89 ------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFNDA 159 (331)
T ss_pred ------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999964 5799999999
Q ss_pred hccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhH
Q 005755 484 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDR 563 (679)
Q Consensus 484 f~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~ 563 (679)
|++||++|+|+++|+||||||+|.+.++++|+.|.||.+.++.+ +++|||||||+. .+.||.+|.||.+ +.||+++
T Consensus 160 f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~--~~~g~~~n~Rg~s-~~fg~~~ 235 (331)
T KOG0374|consen 160 FNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDD--DVPGWEENDRGVS-FTFGPAV 235 (331)
T ss_pred HhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCC--CCCCcccCCCcee-eEecHHH
Confidence 99999999999999999999999999999999999998887766 999999999986 3789999999999 8999999
Q ss_pred HHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecCCCCCCCCCCCCCc
Q 005755 564 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPE 643 (679)
Q Consensus 564 ~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (679)
+++||+++++++||||||+|+||||+|++++++||||||+|||.++|+||+|.|++++.|++++++|.... +. .
T Consensus 236 v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~~~~----~~--~ 309 (331)
T KOG0374|consen 236 VEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPEGGI----DK--D 309 (331)
T ss_pred HHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCCeEEEEEecccccc----cc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999995311 00 1
Q ss_pred ccchhhHHHHhhcCCCCCCCC
Q 005755 644 RVIDDMWMQELNIQRPPTPTR 664 (679)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~ 664 (679)
......|..+.+..++.++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~ 330 (331)
T KOG0374|consen 310 KIEALGVGSDKKAILSTSKLS 330 (331)
T ss_pred cccccccccccccccccccCC
Confidence 112233444556666666654
No 3
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-74 Score=553.69 Aligned_cols=286 Identities=38% Similarity=0.706 Sum_probs=269.6
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 005755 325 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 404 (679)
Q Consensus 325 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~ 404 (679)
.|+.|+...+.+ .|+++|+..||+.++++|..|.++..++.|+.|||||||||.||+++|+..|--|+.
T Consensus 6 ~d~wi~~vk~ck----------yLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t- 74 (306)
T KOG0373|consen 6 LDQWIETVKKCK----------YLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT- 74 (306)
T ss_pred HHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc-
Confidence 356666665543 589999999999999999999999999999999999999999999999998876655
Q ss_pred CCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhh
Q 005755 405 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 484 (679)
Q Consensus 405 ~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 484 (679)
+|||+|||||||.+|+|++.+|+.||.+||.+|.|||||||.+.+...|||++||..+||. ...|+.+.++|
T Consensus 75 -----nYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGn---an~wkycckVF 146 (306)
T KOG0373|consen 75 -----NYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGN---ANVWKYCCKVF 146 (306)
T ss_pred -----ceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCC---chHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999986 47999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 005755 485 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 564 (679)
Q Consensus 485 ~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~ 564 (679)
+.|+++|+|+++|+|||||+||.+.++|||+.|.|..++|..+ .+|||+||||++ ++.|.-++||+| +.||.+++
T Consensus 147 D~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G-~fcDlmWSDPed---ve~W~vSpRGAG-wlFGskVt 221 (306)
T KOG0373|consen 147 DFLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPED---VETWAVSPRGAG-WLFGSKVT 221 (306)
T ss_pred hhhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC-CccceeccChhh---hhhheeCCCCcc-eeechhhh
Confidence 9999999999999999999999999999999999999999887 799999999975 788999999999 78999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCe-EEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecCCCCC
Q 005755 565 SDFCKRNKLQLIIRAHECVMDGFERFAQGQ-LITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 634 (679)
Q Consensus 565 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~-liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~~~~~ 634 (679)
.+|+..|+|++|+|+||.|++||++.+++| |+|||||||||++++|.|+||.++++++-++|+|..+|..
T Consensus 222 ~eF~~iN~L~LicRaHQLV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd~ 292 (306)
T KOG0373|consen 222 TEFNHINNLNLICRAHQLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPDN 292 (306)
T ss_pred HHHHhccchHHHHhHHHHHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCCc
Confidence 999999999999999999999999988888 9999999999999999999999999999999999877643
No 4
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=3.9e-72 Score=591.74 Aligned_cols=294 Identities=47% Similarity=0.860 Sum_probs=275.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 005755 325 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 404 (679)
Q Consensus 325 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~ 404 (679)
++++|+.+++.+.+++. ....|+++||.+||++|+++|++||+++++.+|++|||||||||.+|.++|+..++++..
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 68899999987766542 223689999999999999999999999999999999999999999999999999998765
Q ss_pred CCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhh
Q 005755 405 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 484 (679)
Q Consensus 405 ~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 484 (679)
+|||||||||||++++||+.+|+++|+.+|.+|++||||||...++..|||+.||..+|+ ..+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~----~~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT----IKLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999994 47999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 005755 485 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 564 (679)
Q Consensus 485 ~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~ 564 (679)
++||+||+|+++||||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWSDP~~--~~~~~~~s~RG~g-~~FG~~~~ 234 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTG-LLCDLLWSDPDK--DVQGWADNERGVS-YVFSQEIV 234 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccc-hhhheeecCccc--ccCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887654 899999999985 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecCCCCC
Q 005755 565 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 634 (679)
Q Consensus 565 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~~~~~ 634 (679)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.|.|.+..
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999886544
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=2.8e-71 Score=586.10 Aligned_cols=285 Identities=33% Similarity=0.587 Sum_probs=256.3
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecC----CeEEEccCCCCHHHHHHHHHHhCC
Q 005755 324 LHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGF 399 (679)
Q Consensus 324 ~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~----pi~ViGDIHG~~~dL~~l~~~~g~ 399 (679)
.++++|+.|++.. .|+++++.+||++|+++|++||+++++.. |++|||||||||.||+++|+..|+
T Consensus 6 ~~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~ 75 (321)
T cd07420 6 HIDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGL 75 (321)
T ss_pred HHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCC
Confidence 3688999998743 47899999999999999999999999986 899999999999999999999998
Q ss_pred CCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhh
Q 005755 400 PSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTR 479 (679)
Q Consensus 400 ~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~ 479 (679)
|+... +|||||||||||++|+||+.+|++||++||++|++||||||.+.++..|||++||..+|+.. +..+|..
T Consensus 76 ~~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~~ 149 (321)
T cd07420 76 PSPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILRL 149 (321)
T ss_pred CCccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHHH
Confidence 86532 89999999999999999999999999999999999999999999999999999999999753 4679999
Q ss_pred hhhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCccc-----CC---------------------Ccceeeec
Q 005755 480 FNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM-----DA---------------------GSIILMDL 533 (679)
Q Consensus 480 ~~~~f~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~-----~~---------------------~~~~~~dl 533 (679)
++++|++||+||+|+++||||||||++ ..++++|+.++|+... +. ...+++||
T Consensus 150 ~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 228 (321)
T cd07420 150 LEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDI 228 (321)
T ss_pred HHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhhee
Confidence 999999999999999999999999997 5799999999884211 10 01367899
Q ss_pred ccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEE
Q 005755 534 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA 613 (679)
Q Consensus 534 LWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga 613 (679)
|||||... ...|.+++||.| +.||++++++||++|++++||||||++++||+++++++|||||||||||+.++|+||
T Consensus 229 LWSDP~~~--~~~~~~~~RG~g-~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~ga 305 (321)
T cd07420 229 LWSDPKAQ--KGCKPNTFRGGG-CYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGA 305 (321)
T ss_pred eecCCccC--CCCCccCCCCCc-cccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEE
Confidence 99999853 233666789999 689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCceEEeEEe
Q 005755 614 ILVVGRGLVVVPKLI 628 (679)
Q Consensus 614 ~l~i~~~~~~~~~~~ 628 (679)
+|.|++++.+.+..|
T Consensus 306 vl~i~~~~~~~f~~~ 320 (321)
T cd07420 306 YIKLGPDLTPHFVQY 320 (321)
T ss_pred EEEECCCCceeEEEe
Confidence 999999998888765
No 6
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=3.3e-71 Score=587.78 Aligned_cols=303 Identities=74% Similarity=1.267 Sum_probs=279.5
Q ss_pred HHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCC--CC
Q 005755 328 IISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTA--GD 405 (679)
Q Consensus 328 ~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~--~~ 405 (679)
+|++|++|+.|+++....+.|+++|+.+||++|+++|++||+++++.+|++|||||||||.+|.++|+.+|+++.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 4788999999999888888999999999999999999999999999999999999999999999999999988641 22
Q ss_pred CceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCC--ccchhhhhhhhh
Q 005755 406 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGEN--DGIWAWTRFNQL 483 (679)
Q Consensus 406 ~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~--~~~~~~~~~~~~ 483 (679)
....+|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. .+..+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 223489999999999999999999999999999999999999999999999999999999999762 335799999999
Q ss_pred hccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCC---CCCCc-eee
Q 005755 484 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNA---RGPGL-VTF 559 (679)
Q Consensus 484 f~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~---Rg~g~-~~f 559 (679)
|++||++++++++++||||||+|.+.++++|+.+.||...+....+++|+|||||...+...+|.+|. ||.|. +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998544444589999999998765567888887 99994 789
Q ss_pred ChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecC
Q 005755 560 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 630 (679)
Q Consensus 560 g~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~ 630 (679)
|++++++||++||+++||||||++++||+++++++|||||||||||+.++|+||+|+|+++++++|++|+|
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 7
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.1e-70 Score=577.48 Aligned_cols=290 Identities=41% Similarity=0.781 Sum_probs=270.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCC
Q 005755 324 LHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTA 403 (679)
Q Consensus 324 ~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~ 403 (679)
+++++|.++++...+.. .....+++++|.+||++++++|++||+++++.+|++|||||||||.+|+++|+..++++.+
T Consensus 3 ~~~~~i~~~~~~~~~~~--~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~~ 80 (294)
T PTZ00244 3 LVQTLIEKMLTVKGNRT--QRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYS 80 (294)
T ss_pred hHHHHHHHHHhcccCCC--ccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCcc
Confidence 56888999988654432 2334689999999999999999999999999999999999999999999999999998765
Q ss_pred CCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhh
Q 005755 404 GDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQL 483 (679)
Q Consensus 404 ~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~ 483 (679)
+|||||||||||++|+||+.+|+++|+.+|.++++||||||...++..|||++||..+|+ ..+|..++++
T Consensus 81 ------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~ 150 (294)
T PTZ00244 81 ------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN----IKLFKAFTDV 150 (294)
T ss_pred ------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh----HHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999994 4699999999
Q ss_pred hccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhH
Q 005755 484 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDR 563 (679)
Q Consensus 484 f~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~ 563 (679)
|++||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||+++
T Consensus 151 f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~ 226 (294)
T PTZ00244 151 FNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRG-ILCDLLWADPED--EVRGFLESDRGVS-YLFGEDI 226 (294)
T ss_pred HHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccc-hhheeeecCccc--ccCCCCcCCCCCc-cccCHHH
Confidence 99999999999999999999999999999999999999877654 889999999975 3578999999999 7899999
Q ss_pred HHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEec
Q 005755 564 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIH 629 (679)
Q Consensus 564 ~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~ 629 (679)
+++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+++++|.
T Consensus 227 ~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~ 292 (294)
T PTZ00244 227 VNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIP 292 (294)
T ss_pred HHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEee
Confidence 999999999999999999999999999999999999999999999999999999999999998764
No 8
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=1.6e-70 Score=574.76 Aligned_cols=283 Identities=42% Similarity=0.754 Sum_probs=266.9
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 005755 325 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 404 (679)
Q Consensus 325 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~ 404 (679)
++++|+.+++.. .|+++++.+||++|+++|++||+++++.+|++|||||||||.+|+++|+..++++..
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 467888888642 478999999999999999999999999999999999999999999999999988765
Q ss_pred CCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhh
Q 005755 405 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 484 (679)
Q Consensus 405 ~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 484 (679)
+|||||||||||++|+||+.+|++||+.+|.+|++||||||...++..|||++||..+|+. ..+|..++++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999964 36999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 005755 485 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 564 (679)
Q Consensus 485 ~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~ 564 (679)
++||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||... .+|.+|+||.| +.||++++
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~~~Rg~g-~~fg~~~~ 217 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDI---EGWGISPRGAG-YLFGQDVV 217 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCcc---CCCCcCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887655 7899999999863 68999999999 68999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecCC
Q 005755 565 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPL 631 (679)
Q Consensus 565 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~~ 631 (679)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++++.++.|.|.
T Consensus 218 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~ 284 (285)
T cd07415 218 EEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAA 284 (285)
T ss_pred HHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 9
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.3e-70 Score=577.55 Aligned_cols=291 Identities=49% Similarity=0.895 Sum_probs=271.1
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 005755 325 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 404 (679)
Q Consensus 325 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~ 404 (679)
++++|+.+++.+.++. .....++++++.+||++|+++|++||+++++++|++||||||||+.+|.++|+..++++.+
T Consensus 2 ~~~~i~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRP--GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCC--cccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 4678888888765543 2334689999999999999999999999999999999999999999999999999998766
Q ss_pred CCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhh
Q 005755 405 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 484 (679)
Q Consensus 405 ~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 484 (679)
+|||||||||||++++||+.+|+++|+.+|.++++||||||.+.++..|||++||..+|+ ..+|..++++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN----IKLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999984 46999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 005755 485 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 564 (679)
Q Consensus 485 ~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~ 564 (679)
++||++|++++++||||||++|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~ 225 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQG-LLCDLLWSDPDK--DVQGWGENDRGVS-FTFGKDVV 225 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchh-hHhhhhccCccc--ccCCCccCCCCcc-eecCHHHH
Confidence 9999999999999999999999999999999999999877654 899999999985 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecCC
Q 005755 565 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPL 631 (679)
Q Consensus 565 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~~ 631 (679)
++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|+|.
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~~ 292 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 292 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998763
No 10
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=4.9e-70 Score=574.17 Aligned_cols=286 Identities=41% Similarity=0.763 Sum_probs=266.1
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 005755 325 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 404 (679)
Q Consensus 325 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~ 404 (679)
++++|+.+++.. .|+++++.+||++|+++|++||+++++.+|++|||||||||.+|.++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 477888887642 478999999999999999999999999999999999999999999999999887655
Q ss_pred CCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhh
Q 005755 405 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 484 (679)
Q Consensus 405 ~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 484 (679)
+|||||||||||++++||+.+|+++|+.+|.+|++||||||.+.++..|||++||..+|+. ..+|..++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~---~~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGN---SNPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcC---hhHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999974 25899999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 005755 485 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 564 (679)
Q Consensus 485 ~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~ 564 (679)
++||++|+|++++|||||||+|.+.++++|+.++||.+.+..+ .++|+|||||.. ..+|.+|+||.| +.||++++
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~~~Rg~g-~~fg~~~~ 218 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEE---VEYWAVNSRGAG-YLFGAKVT 218 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccc---cCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887665 789999999975 468999999999 68999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecC-CeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecCCCCC
Q 005755 565 SDFCKRNKLQLIIRAHECVMDGFERFAQ-GQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 634 (679)
Q Consensus 565 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~-~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~~~~~ 634 (679)
++||++||+++||||||++++||+++++ ++|||||||||||+..+|+||+|.+++++++.++.|.|.+..
T Consensus 219 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~~ 289 (303)
T PTZ00239 219 KEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPES 289 (303)
T ss_pred HHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCcc
Confidence 9999999999999999999999998665 459999999999999999999999999999999999987543
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=7.3e-69 Score=568.84 Aligned_cols=292 Identities=35% Similarity=0.635 Sum_probs=269.4
Q ss_pred CchhHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCC----eEEEccCCCCHHHHHHHHH
Q 005755 320 SPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFD 395 (679)
Q Consensus 320 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~p----i~ViGDIHG~~~dL~~l~~ 395 (679)
-+.++++++|+.+.+.+ .|+.+++.+||++|.++|++||+++++..| ++|||||||||.+|+++|+
T Consensus 11 i~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~ 80 (316)
T cd07417 11 VTLEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFE 80 (316)
T ss_pred CCHHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHH
Confidence 35677899999998753 478999999999999999999999999877 9999999999999999999
Q ss_pred HhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccch
Q 005755 396 EYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIW 475 (679)
Q Consensus 396 ~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~ 475 (679)
..|+++..+ +|||||||||||++|+|||.+|++||+.+|++|++||||||.+.++..|||..||..+|+ ..
T Consensus 81 ~~g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~----~~ 151 (316)
T cd07417 81 LNGLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYN----EQ 151 (316)
T ss_pred hcCCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhccc----HH
Confidence 999986542 799999999999999999999999999999999999999999999999999999999984 46
Q ss_pred hhhhhhhhhccCCceEEEcCcEEEecCCc-CCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCC
Q 005755 476 AWTRFNQLFNCLPLAALIEKKIICMHGGI-GRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGP 554 (679)
Q Consensus 476 ~~~~~~~~f~~LPlaa~i~~~ilcvHgGi-~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~ 554 (679)
+|..++++|++||+++++++++||||||| ++.+.++++|++++||.+.+..+ +++|+|||||.+ ..+|.+|+||.
T Consensus 152 l~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~s~Rg~ 227 (316)
T cd07417 152 MFDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSG-LMCELLWSDPQP---QPGRSPSKRGV 227 (316)
T ss_pred HHHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccc-cceeeeecCCCC---CCCCCccCCCC
Confidence 99999999999999999999999999999 56788999999999998776544 899999999985 35899999999
Q ss_pred CceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcC-CceEEeEEecCCCC
Q 005755 555 GLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGR-GLVVVPKLIHPLPP 633 (679)
Q Consensus 555 g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~-~~~~~~~~~~~~~~ 633 (679)
| +.||++++++||++||+++||||||++++||+++++++|+|||||||||+..+|+||+|.|++ ++++.++.|.|.+.
T Consensus 228 g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~ 306 (316)
T cd07417 228 G-CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPH 306 (316)
T ss_pred c-eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCC
Confidence 9 689999999999999999999999999999999999999999999999999999999999999 89999999988765
Q ss_pred CC
Q 005755 634 PL 635 (679)
Q Consensus 634 ~~ 635 (679)
..
T Consensus 307 ~~ 308 (316)
T cd07417 307 PN 308 (316)
T ss_pred CC
Confidence 43
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=3.7e-68 Score=562.28 Aligned_cols=286 Identities=37% Similarity=0.649 Sum_probs=261.4
Q ss_pred HHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCCC
Q 005755 326 KKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGD 405 (679)
Q Consensus 326 ~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~ 405 (679)
+-+++.+.+.. .|+++++.+||++|+++|++||+++++++|++|||||||||.||.++|+..+.++.+
T Consensus 4 ~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~-- 71 (305)
T cd07416 4 DVLKAHFMREG----------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT-- 71 (305)
T ss_pred HHHHHHHHcCC----------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc--
Confidence 45666666543 378999999999999999999999999999999999999999999999999988765
Q ss_pred CceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhhc
Q 005755 406 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFN 485 (679)
Q Consensus 406 ~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~ 485 (679)
+|||||||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||..||..+|+ ..+|..++++|+
T Consensus 72 ----~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~----~~l~~~~~~~f~ 143 (305)
T cd07416 72 ----RYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMEAFD 143 (305)
T ss_pred ----eEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhcc----HHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999884 468999999999
Q ss_pred cCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCcc----CCCCCC-CCCCCceeeC
Q 005755 486 CLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSI----EGLRPN-ARGPGLVTFG 560 (679)
Q Consensus 486 ~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~----~g~~~n-~Rg~g~~~fg 560 (679)
+||+++++++++|||||||+|.+.++++|++++||.+.+..+ +++|+|||||...+.. .+|.+| .||.| +.||
T Consensus 144 ~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g-~~fG 221 (305)
T cd07416 144 CLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCS-YFYS 221 (305)
T ss_pred hccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCc-eecC
Confidence 999999999999999999999999999999999998876654 7899999999753321 358876 89999 7899
Q ss_pred hhHHHHHHHHcCCeEEEecccccccceEEecCC------eEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecCCCCC
Q 005755 561 PDRVSDFCKRNKLQLIIRAHECVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 634 (679)
Q Consensus 561 ~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~------~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~~~~~ 634 (679)
++++++||++||+++||||||++++||++++++ +||||||||||||.++|+||+|.|+++. +.++.|.+.+..
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~~~ 300 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPHP 300 (305)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCCCC
Confidence 999999999999999999999999999998886 9999999999999999999999999985 688999887654
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=5.6e-68 Score=553.23 Aligned_cols=269 Identities=48% Similarity=0.880 Sum_probs=255.4
Q ss_pred cCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHH
Q 005755 348 LDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLET 427 (679)
Q Consensus 348 l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slev 427 (679)
++++++.+||++|+++|++||++++++.|++||||||||+.+|.++|+..+.++.+ +|||||||||||++|+||
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~ 74 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEV 74 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHH
Confidence 36789999999999999999999999999999999999999999999999987665 899999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEEEcCcEEEecCCcCCC
Q 005755 428 ITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRS 507 (679)
Q Consensus 428 l~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~ilcvHgGi~p~ 507 (679)
+.+|++||+.+|.++++||||||...++..|||++||..+|+ ..+|..++++|++||+++++++++|||||||+|.
T Consensus 75 l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~----~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~ 150 (271)
T smart00156 75 ILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG----EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD 150 (271)
T ss_pred HHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC----HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCc
Confidence 999999999999999999999999999999999999999984 4799999999999999999999999999999999
Q ss_pred CCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccce
Q 005755 508 IHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGF 587 (679)
Q Consensus 508 l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~ 587 (679)
+.++++|+.++||.+.+... +++|+|||||.. ...+|.+|+||.| +.||++++++||++||+++||||||++++||
T Consensus 151 ~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~ 226 (271)
T smart00156 151 LTTLDDIRKLKRPQEPPDEG-LLIDLLWSDPDQ--PVDGFQPSIRGAS-YYFGPDAVDEFLKKNNLKLIIRAHQVVDDGY 226 (271)
T ss_pred cCCHHHHhcccCCCCCCchh-hhhheeecCCCc--ccCCCccCCCCCc-cccCHHHHHHHHHHCCCeEEEecCcccCCcE
Confidence 99999999999998876554 899999999964 3578999999999 6899999999999999999999999999999
Q ss_pred EEecCCeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecC
Q 005755 588 ERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 630 (679)
Q Consensus 588 ~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~ 630 (679)
+++++++|||||||||||+..+|+||+|.|+++++++++.|.|
T Consensus 227 ~~~~~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~ 269 (271)
T smart00156 227 EFFHDRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKP 269 (271)
T ss_pred EEecCCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999998876
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=2.9e-65 Score=547.54 Aligned_cols=300 Identities=33% Similarity=0.585 Sum_probs=258.9
Q ss_pred chhHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeec----CCeEEEccCCCCHHHHHHHHHH
Q 005755 321 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDE 396 (679)
Q Consensus 321 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~----~pi~ViGDIHG~~~dL~~l~~~ 396 (679)
+.+.++.||+.+......-++......|+.++|.+||++|+++|++||++++++ +|++||||||||+.+|+++|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~ 87 (377)
T cd07418 8 TNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLED 87 (377)
T ss_pred CHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHH
Confidence 345568888887543211122333346899999999999999999999999998 8999999999999999999999
Q ss_pred hCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchh
Q 005755 397 YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWA 476 (679)
Q Consensus 397 ~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~ 476 (679)
.|+++.+. +|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||.+||..+|+.. +..+
T Consensus 88 ~g~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l 161 (377)
T cd07418 88 AGFPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHV 161 (377)
T ss_pred hCCCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHH
Confidence 99886542 79999999999999999999999999999999999999999999999999999999999753 4579
Q ss_pred hhhhhhhhccCCceEEEcCcEEEecCCc---------------------------CCCCCCHHHhhhccCCc-ccCCCc-
Q 005755 477 WTRFNQLFNCLPLAALIEKKIICMHGGI---------------------------GRSIHSVEQIEKLERPI-TMDAGS- 527 (679)
Q Consensus 477 ~~~~~~~f~~LPlaa~i~~~ilcvHgGi---------------------------~p~l~~l~~I~~i~Rp~-~~~~~~- 527 (679)
|+.++++|++||++++|++++||||||| +|.+.++++|+.++||. +.+..+
T Consensus 162 ~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~ 241 (377)
T cd07418 162 YRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGS 241 (377)
T ss_pred HHHHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCc
Confidence 9999999999999999999999999999 45578999999999985 444332
Q ss_pred -ceeeecccCCCCCCCccCCCCCC-CCCCCceeeChhHHHHHHHHcCCeEEEecccc------------cccceEEecC-
Q 005755 528 -IILMDLLWSDPTENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHEC------------VMDGFERFAQ- 592 (679)
Q Consensus 528 -~~~~dlLWsDP~~~~~~~g~~~n-~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~------------v~~G~~~~~~- 592 (679)
.+++|||||||.. ..+|.+| .||.| +.||++++++||++|++++||||||| |++||+++++
T Consensus 242 ~~i~~dlLWSDP~~---~~g~~~~~~RG~g-~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~ 317 (377)
T cd07418 242 NLIPGDVLWSDPSL---TPGLSPNKQRGIG-LLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDV 317 (377)
T ss_pred cccceeeEeeCCcc---CCCCCccCCCCCc-cccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccC
Confidence 2478999999985 3578887 79999 68999999999999999999999996 6899999887
Q ss_pred --CeEEEEeeccccC------CCCCCeEEEEEEcCCc--eEEeEEecC
Q 005755 593 --GQLITLFSATNYC------GTANNAGAILVVGRGL--VVVPKLIHP 630 (679)
Q Consensus 593 --~~liTvFSa~~Y~------~~~~N~ga~l~i~~~~--~~~~~~~~~ 630 (679)
++||||||||||| +.++|+||+++++.+- ...|+.|..
T Consensus 318 ~~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~ 365 (377)
T cd07418 318 ESGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEA 365 (377)
T ss_pred CCCcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEeec
Confidence 9999999999999 5789999999997643 456666644
No 15
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-65 Score=503.79 Aligned_cols=286 Identities=41% Similarity=0.721 Sum_probs=269.7
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 005755 325 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 404 (679)
Q Consensus 325 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~ 404 (679)
++..|..|.+.+ .+++.++..||+.|+++|.+|.+|..+..|++||||+||||+||+++|+..|..++.
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 466777777764 578889999999999999999999999999999999999999999999988887665
Q ss_pred CCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhh
Q 005755 405 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 484 (679)
Q Consensus 405 ~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 484 (679)
+|+|+|||||||++|.|++.+|.++|++||++|.+||||||...+...|||++||.+|||. ..+|+.|.+.|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~---anvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGN---ANVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhccc---ccchHHhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999985 47999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 005755 485 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 564 (679)
Q Consensus 485 ~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~ 564 (679)
+++|+.|+|+++|||+|||++|++.+++.++.+.|-.+++.++ .+||||||||+. .-||..++||.| +.||.+..
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpdd---r~gwg~sprgag-~tfg~di~ 235 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDD---RCGWGISPRGAG-YTFGQDIS 235 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCccc---CCCCCCCCCCCC-cccchhhH
Confidence 9999999999999999999999999999999999988888877 688999999975 689999999999 79999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecCCCCC
Q 005755 565 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 634 (679)
Q Consensus 565 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~~~~~ 634 (679)
++|-.+||+++|.|+||.+++||.|.+...++|||||||||+.++|.+|+|.+++.....|..|.|.+..
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~k 305 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPRK 305 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996543
No 16
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=3.1e-64 Score=514.91 Aligned_cols=276 Identities=38% Similarity=0.658 Sum_probs=252.2
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHH
Q 005755 347 FLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE 426 (679)
Q Consensus 347 ~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~sle 426 (679)
.|+++....|+.++..+|++|++++++++||.|||||||||.||+++|+..|.|... +|+|||||||||.+|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 378999999999999999999999999999999999999999999999999888665 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEEEcCcEEEecCCcCC
Q 005755 427 TITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGR 506 (679)
Q Consensus 427 vl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~ilcvHgGi~p 506 (679)
|+++|.+||+.||+.++|||||||++.+...|.|+.||..+|. ..+|+.+.+.|++|||||+.++++||||||+||
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYs----e~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhcc----HHHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 9999999999999999999999999999999999999999994 579999999999999999999999999999999
Q ss_pred CCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCc----cCCCCCC-CCCCCceeeChhHHHHHHHHcCCeEEEeccc
Q 005755 507 SIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS----IEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHE 581 (679)
Q Consensus 507 ~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~----~~g~~~n-~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe 581 (679)
.+.++++|+++.|..++|..+ .+||||||||.++.+ .+.|.+| .||++ |.|...++.+||+.|||--|||+||
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS-yfysy~A~C~FLq~nnLLSIiRAHE 287 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS-YFYSYPAVCEFLQNNNLLSIIRAHE 287 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhhhccccccccccccCcccccc-ceechHHHHHHHHhCCchhhhhhhh
Confidence 999999999999999999877 899999999976322 2457777 79999 6899999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEeeccccCCCCCCeEEEEEEcCCceEEeEEecCCCCCC
Q 005755 582 CVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPL 635 (679)
Q Consensus 582 ~v~~G~~~~~~~------~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~~~~~~~ 635 (679)
.+.-||..+... .||||||||||-+.++|+||||...++. +....|.-.|..+
T Consensus 288 AQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNV-MNIRQFncSPHPY 346 (517)
T KOG0375|consen 288 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPHPY 346 (517)
T ss_pred hhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhccc-ceeeccCCCCCCc
Confidence 999999876554 6999999999999999999999987654 4556665544433
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-54 Score=447.35 Aligned_cols=283 Identities=33% Similarity=0.621 Sum_probs=250.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeec----CCeEEEccCCCCHHHHHHHHHHhCCC
Q 005755 325 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDEYGFP 400 (679)
Q Consensus 325 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l~----~pi~ViGDIHG~~~dL~~l~~~~g~~ 400 (679)
++.+|+.+-..+ .|....+..|+.+|+++|++-|++-+++ ..|.||||+||.++||+-+|.+.|+|
T Consensus 121 i~~lieaFk~kq----------~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlP 190 (631)
T KOG0377|consen 121 IDLLIEAFKKKQ----------RLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLP 190 (631)
T ss_pred HHHHHHHHHHhh----------hccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCC
Confidence 466777654432 4788899999999999999999999985 46999999999999999999999999
Q ss_pred CCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhh
Q 005755 401 STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRF 480 (679)
Q Consensus 401 ~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~ 480 (679)
+.+. -|||.||+||||.+|+|||++|+++-+.||..|||-|||||+..+|-.|||..|...+|... +..+...+
T Consensus 191 S~~n-----pYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~l 264 (631)
T KOG0377|consen 191 SSSN-----PYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFL 264 (631)
T ss_pred CCCC-----CeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHH
Confidence 8874 79999999999999999999999999999999999999999999999999999999999765 67888899
Q ss_pred hhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccC---------CcccCC------------CcceeeecccCCCC
Q 005755 481 NQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLER---------PITMDA------------GSIILMDLLWSDPT 539 (679)
Q Consensus 481 ~~~f~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~R---------p~~~~~------------~~~~~~dlLWsDP~ 539 (679)
.++|.|||++.+|+.+||+||||||.. ++++-|.+|+| |++... +++.+.|+|||||.
T Consensus 265 eevy~WLPi~tiid~~ilvvHGGiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~ 343 (631)
T KOG0377|consen 265 EEVYRWLPIGTIIDSRILVVHGGISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQ 343 (631)
T ss_pred HHHHHhcchhhhcccceEEEecCcccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcc
Confidence 999999999999999999999999986 67777777765 221100 23467899999998
Q ss_pred CCCccCCCCCC-CCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEc
Q 005755 540 ENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG 618 (679)
Q Consensus 540 ~~~~~~g~~~n-~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~ 618 (679)
. ..|..|| -||.| ++||+|++.+||++++++++||+|||.++||||.++++|+|||||+||.....|+||++.+.
T Consensus 344 ~---~~GC~pNt~RGgG-~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl~ 419 (631)
T KOG0377|consen 344 A---TMGCVPNTLRGGG-CYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKLG 419 (631)
T ss_pred c---ccCCCcccccCCc-ceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEeC
Confidence 6 4678888 69999 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeEEe
Q 005755 619 RGLVVVPKLI 628 (679)
Q Consensus 619 ~~~~~~~~~~ 628 (679)
+.+.--|...
T Consensus 420 ~~~~PhfvQY 429 (631)
T KOG0377|consen 420 NQLTPHFVQY 429 (631)
T ss_pred CCCCchHHHH
Confidence 8876444333
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=6.9e-48 Score=413.56 Aligned_cols=274 Identities=38% Similarity=0.663 Sum_probs=250.4
Q ss_pred cCHHHHHHHHHHHHHHHhcCCceeeecCC----eEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC
Q 005755 348 LDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH 423 (679)
Q Consensus 348 l~~~~i~~L~~~~~~il~~ep~ll~l~~p----i~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~ 423 (679)
|...-...|+..+..++.++|+++++..| +.|+||+||||.|++++|+..|.|+... .|+|-||+||||..
T Consensus 183 L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs~ 257 (476)
T KOG0376|consen 183 LPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGSW 257 (476)
T ss_pred cccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeeccc
Confidence 45556778899999999999999999765 8999999999999999999999998764 89999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEEEcCcEEEecCC
Q 005755 424 SLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGG 503 (679)
Q Consensus 424 slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~ilcvHgG 503 (679)
|.|++..+++.|+.+|+++|++|||||+..++..|||.+|+..+|.+ ..+..+.++|.+||++.+|+++++.+|||
T Consensus 258 s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte----~~~~~f~~~f~~LPl~~~i~~~~~~~hgg 333 (476)
T KOG0376|consen 258 SVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE----EMFNLFSEVFIWLPLAHLINNKVLVMHGG 333 (476)
T ss_pred ceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH----HHHHhhhhhhccccchhhhcCceEEEecC
Confidence 99999999999999999999999999999999999999999999954 56777779999999999999999999999
Q ss_pred cC-CCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccc
Q 005755 504 IG-RSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHEC 582 (679)
Q Consensus 504 i~-p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~ 582 (679)
+. +.-.++++|++|.|+...+..+ .++|+|||||.. ..|..|+.||.| ..||+|+.++||+.|++++|||+||+
T Consensus 334 lf~~~~v~l~d~r~i~r~~~~~~~~-~~~~~lws~pq~---~~g~s~S~r~~g-~~fG~d~t~~f~~~n~l~~i~rshe~ 408 (476)
T KOG0376|consen 334 LFSPDGVTLEDFRNIDRFEQPPEEG-LMCELLWSDPQP---ANGRSPSKRGVG-LQFGPDVTERFLQDNNLDKIIRSHEV 408 (476)
T ss_pred cCCCCCccHHHHHhhhhccCCcccc-cccccccCCCcc---ccCCCccccCce-eeeCCCchhhHHhhcchHHHhhcccc
Confidence 85 4556899999999995555444 899999999986 478999999999 68999999999999999999999999
Q ss_pred cccceEEecCCeEEEEeeccccCCCCCCeEEEEEEc-CCceEEeEEecCCCCCC
Q 005755 583 VMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG-RGLVVVPKLIHPLPPPL 635 (679)
Q Consensus 583 v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~-~~~~~~~~~~~~~~~~~ 635 (679)
.+.||++-++|+|+|||||||||...+|.||++.++ ++++..+..|.++|..-
T Consensus 409 ~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~ 462 (476)
T KOG0376|consen 409 KDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPD 462 (476)
T ss_pred CCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCC
Confidence 999999999999999999999999999999999998 78888888898877543
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=100.00 E-value=1.7e-32 Score=278.29 Aligned_cols=218 Identities=49% Similarity=0.779 Sum_probs=174.7
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhh
Q 005755 378 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINAL 457 (679)
Q Consensus 378 ~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~ 457 (679)
+|||||||++.+|.++|+..++++.+ .+||||||||||+.+.||+.+|+.++.. |.++++|+||||.+.++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999886554 8999999999999999999999999887 8899999999999998888
Q ss_pred cCChHHHH-----HHhCCCccchhhhhhhhhhccCCceEEEcC-cEEEecCCcCCCCCCHHHhhhccCCcccCCCcceee
Q 005755 458 FGFRLECI-----ERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILM 531 (679)
Q Consensus 458 ~gf~~e~~-----~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~ 531 (679)
+++..+.. ...........+..+.++|..||+++.++. +++|||||+.|.....+++. ..+ ......
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~-~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEP-EDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCc-ccccce
Confidence 77665421 011111234567788899999999999986 99999999999876555544 111 123678
Q ss_pred ecccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCe
Q 005755 532 DLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNA 611 (679)
Q Consensus 532 dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ 611 (679)
+++|+||.... .....+.|+. |+++++.|++.++.+.|||||+++.+|+.....+++|||+|++.|++..+|.
T Consensus 147 ~~lw~r~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~ 219 (225)
T cd00144 147 DLLWSDPLELP--GGFGSSRRGG-----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNK 219 (225)
T ss_pred eeeecCCCCCC--CCCcCCCCCC-----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCcc
Confidence 99999997522 1222333333 8999999999999999999999999998767789999999999999877777
Q ss_pred EEEEE
Q 005755 612 GAILV 616 (679)
Q Consensus 612 ga~l~ 616 (679)
.+++.
T Consensus 220 l~~~~ 224 (225)
T cd00144 220 LAALV 224 (225)
T ss_pred EEEEe
Confidence 77654
No 20
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.90 E-value=2.1e-23 Score=210.34 Aligned_cols=185 Identities=21% Similarity=0.370 Sum_probs=131.7
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCC--ceeeEEEeccccCCCCCcHHHHHHHHHHHHh---cCCCeEEecCCcccc
Q 005755 378 KVFGDLHGQFGDLMRLFDEYGFPSTAGDI--TYIDYLFLGDYVDRGQHSLETITLLLALKIE---YPENVHLIRGNHEAA 452 (679)
Q Consensus 378 ~ViGDIHG~~~dL~~l~~~~g~~~~~~~~--~~~~~vFLGDyVDRG~~slevl~lL~~lk~~---~P~~v~lLrGNHE~~ 452 (679)
+||||||||+..|.++|+..++......+ ....+||+|||||||+++.|||.+|++|+.+ .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 58999999999999999998864321111 1228999999999999999999999999865 457899999999999
Q ss_pred hhhhhcCChHH-HHHHhCCC--ccchhh---hhhhhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCC
Q 005755 453 DINALFGFRLE-CIERMGEN--DGIWAW---TRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAG 526 (679)
Q Consensus 453 ~~~~~~gf~~e-~~~~~~~~--~~~~~~---~~~~~~f~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~ 526 (679)
.++..+.+... ....+... .....+ ..+.+|+..+|+...++ ++++||||++|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~-------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGP-------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHH--------------------
Confidence 98755443221 11111100 001112 24478999999999886 58889999922
Q ss_pred cceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeec
Q 005755 527 SIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSA 601 (679)
Q Consensus 527 ~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa 601 (679)
+|++.-. .+.... .=+.+.+.++|+.++.++||+||+.++.|+..+++++||+|.+.
T Consensus 140 -------~w~r~y~-------~~~~~~----~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYS-------KETSDK----ECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhh-------hhhhhc----cchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 3433210 000000 01235788999999999999999999988766899999999874
No 21
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.89 E-value=3.3e-23 Score=214.04 Aligned_cols=131 Identities=22% Similarity=0.393 Sum_probs=98.7
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCC---CceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccc
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGD---ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 452 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~---~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~ 452 (679)
++.||||||||++.|.++|+++++....+. ....++|||||||||||+|+|||.+|+++. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 489999999999999999999987421100 011289999999999999999999999885 456899999999998
Q ss_pred hhhhhcCC-------hHHHHHHhCCC---ccchhhhhhhhhhccCCceEEEc-CcEEEecCCcCCCC
Q 005755 453 DINALFGF-------RLECIERMGEN---DGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSI 508 (679)
Q Consensus 453 ~~~~~~gf-------~~e~~~~~~~~---~~~~~~~~~~~~f~~LPlaa~i~-~~ilcvHgGi~p~l 508 (679)
.++...+- ..+....|... ....+++.+.++|+.||++..++ ++++|||||+.|..
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~ 146 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDY 146 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHh
Confidence 88755331 12233333221 11235677899999999998774 67999999998863
No 22
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.86 E-value=2.9e-22 Score=207.51 Aligned_cols=130 Identities=25% Similarity=0.423 Sum_probs=101.4
Q ss_pred eEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhh
Q 005755 377 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINA 456 (679)
Q Consensus 377 i~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~ 456 (679)
++||||||||+..|.++|+.+++.+..+ .++||||||||||+|+|||.+|++++ .++++|+||||.+.++.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999998864332 89999999999999999999999986 58999999999999887
Q ss_pred hcCChHH----HHHHhCCCccchhhhhhhhhhccCCceEEEcC-cEEEecCCcCCCCCCHHHhhhccC
Q 005755 457 LFGFRLE----CIERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLER 519 (679)
Q Consensus 457 ~~gf~~e----~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~ilcvHgGi~p~l~~l~~I~~i~R 519 (679)
.+|+... ....+- .......+.+++..+|+...+++ ++++|||||+|.. ++++...+.+
T Consensus 72 ~~g~~~~~~~~t~~~~l---~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~~~~~a~ 135 (257)
T cd07422 72 AAGIKKPKKKDTLDDIL---NAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQALKLAR 135 (257)
T ss_pred hcCccccccHhHHHHHH---hccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHHHHHHHH
Confidence 7665311 111110 11123567899999999998865 8999999999984 5555444433
No 23
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.85 E-value=7.1e-21 Score=193.87 Aligned_cols=123 Identities=23% Similarity=0.331 Sum_probs=92.2
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCC--CceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhh
Q 005755 378 KVFGDLHGQFGDLMRLFDEYGFPSTAGD--ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 455 (679)
Q Consensus 378 ~ViGDIHG~~~dL~~l~~~~g~~~~~~~--~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~ 455 (679)
+||||||||++.|.++|+.+++....+. ....++|||||||||||+|.|||.+|+.++. +.++++|+||||.+.+.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHHH
Confidence 6999999999999999999987532100 0011899999999999999999999999863 34899999999999876
Q ss_pred hhcCC-h----------------HHHHHHhCCCccchhhhhhhhhhccCCceEEEcCcEEEecCCcC
Q 005755 456 ALFGF-R----------------LECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIG 505 (679)
Q Consensus 456 ~~~gf-~----------------~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~ilcvHgGi~ 505 (679)
...+- . .+..+.++. ....++.+.++|+.||+.... ++++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDL-GGVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEE-CCEEEEECCcC
Confidence 54321 0 112222221 123456788999999999877 56999999986
No 24
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.85 E-value=2.1e-21 Score=199.34 Aligned_cols=129 Identities=23% Similarity=0.429 Sum_probs=98.3
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCC----CCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCccc
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAG----DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA 451 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~----~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~ 451 (679)
++.||||||||+..|.++|+.+++.+.+. .....++||||||||||++|.|||.+|++++.. .++++||||||.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE~ 79 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHDN 79 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcHH
Confidence 78999999999999999999998864320 000127999999999999999999999998744 479999999999
Q ss_pred chhhhhcCCh-------HHHHHHhCCCccchhhhhhhhhhccCCceEEEc-CcEEEecCCcCCC
Q 005755 452 ADINALFGFR-------LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRS 507 (679)
Q Consensus 452 ~~~~~~~gf~-------~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~-~~ilcvHgGi~p~ 507 (679)
+.++...+.. .+....|... ...+++.+.++|+.||+...++ ++++|||||+++.
T Consensus 80 ~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 80 KLYRKLQGRNVKITHGLEETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHhcCCCccccCcccchHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 8887543311 1222333211 2245567889999999998875 4799999998875
No 25
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.85 E-value=1.4e-20 Score=196.86 Aligned_cols=125 Identities=21% Similarity=0.388 Sum_probs=97.9
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhh
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 455 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~ 455 (679)
.++||||||||+..|.++|+.+++.+..+ .++||||||||||+|+||+.+|.++ +.++++|+||||.+.+.
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~ 72 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLA 72 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHH
Confidence 37999999999999999999998754332 7999999999999999999999887 35799999999999888
Q ss_pred hhcCChHH----HHHHhCCCccchhhhhhhhhhccCCceEEE-cCcEEEecCCcCCCCCCHHH
Q 005755 456 ALFGFRLE----CIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSIHSVEQ 513 (679)
Q Consensus 456 ~~~gf~~e----~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i-~~~ilcvHgGi~p~l~~l~~ 513 (679)
..+|+... ....+- .....+.+.+++..+|+...+ ++++++||||++|.. ++++
T Consensus 73 ~~~g~~~~~~~~~l~~~l---~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~-~~~~ 131 (275)
T PRK00166 73 VAAGIKRNKKKDTLDPIL---EAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW-DLAT 131 (275)
T ss_pred hhcCCccccchhHHHHHH---ccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC-CHHH
Confidence 77775421 111111 112335578899999999876 568999999999974 4444
No 26
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.84 E-value=8e-21 Score=197.21 Aligned_cols=128 Identities=24% Similarity=0.363 Sum_probs=101.8
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhh
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 455 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~ 455 (679)
.++||||||||++.|.++|+++++.+..+ .++||||||||||+|+|||.++.+++ .++++|+||||.+.+.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~ 72 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLA 72 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHH
Confidence 47999999999999999999999865432 79999999999999999999998874 5688999999999998
Q ss_pred hhcCCh-----HHHHHHhCCCccchhhhhhhhhhccCCceEEEc-CcEEEecCCcCCCCCCHHHhhhc
Q 005755 456 ALFGFR-----LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSIHSVEQIEKL 517 (679)
Q Consensus 456 ~~~gf~-----~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~-~~ilcvHgGi~p~l~~l~~I~~i 517 (679)
..+|+. +.....+ .......+.+++..+|+....+ .++++|||||+|.. ++++....
T Consensus 73 ~~~g~~~~~~~d~l~~~l----~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w-~l~~a~~~ 135 (279)
T TIGR00668 73 VFAGISRNKPKDRLDPLL----EAPDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW-DLQTAKEC 135 (279)
T ss_pred HhcCCCccCchHHHHHHH----HccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC-cHHHHHHH
Confidence 888763 2221112 1234466789999999998664 46999999999984 56654443
No 27
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.82 E-value=3.3e-20 Score=188.43 Aligned_cols=120 Identities=26% Similarity=0.363 Sum_probs=90.2
Q ss_pred CCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchh
Q 005755 375 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 454 (679)
Q Consensus 375 ~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~ 454 (679)
.+++||||||||+..|+++|+.+++.+..+ +++||||||||||+|.|||.+|.. .++++|+||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 489999999999999999999998763322 899999999999999999999965 268899999999988
Q ss_pred hhhcCChHHHHHHhCCC-------ccchhhhhhhhhhccCCceEEEc---CcEEEecCCcC
Q 005755 455 NALFGFRLECIERMGEN-------DGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 505 (679)
Q Consensus 455 ~~~~gf~~e~~~~~~~~-------~~~~~~~~~~~~f~~LPlaa~i~---~~ilcvHgGi~ 505 (679)
+...+-....+...|.. .....+..+.++++.||+...++ +++++||||++
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 76533211122222210 11123345568899999997653 57999999984
No 28
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.81 E-value=1.6e-19 Score=181.85 Aligned_cols=147 Identities=27% Similarity=0.373 Sum_probs=104.9
Q ss_pred CCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchh
Q 005755 375 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 454 (679)
Q Consensus 375 ~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~ 454 (679)
++++|||||||++..|.++++..++.+..+ .++|+|||||||+++.||+.+|.. .++++|+||||.+.+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d-----~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~ 69 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD-----RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAI 69 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC-----EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHH
Confidence 368999999999999999999987643221 799999999999999999999865 368999999999998
Q ss_pred hhhcC--ChHHHHHHhCCCc-----cchhhhhhhhhhccCCceEEEc---CcEEEecCCcCCCCCCHHHhhhccCCcccC
Q 005755 455 NALFG--FRLECIERMGEND-----GIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIGRSIHSVEQIEKLERPITMD 524 (679)
Q Consensus 455 ~~~~g--f~~e~~~~~~~~~-----~~~~~~~~~~~f~~LPlaa~i~---~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~ 524 (679)
....+ +..+.+.+++... ....++.+.++|+.||+...++ .+++|||||+.+... .+.+.. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~-~~~~~~--~~~~-- 144 (207)
T cd07424 70 DALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDW-SDGVGA--VTLR-- 144 (207)
T ss_pred hHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchh-hhhhhc--cccC--
Confidence 87655 3334444443321 1113455778999999998875 379999999965521 111110 0111
Q ss_pred CCcceeeecccCCCC
Q 005755 525 AGSIILMDLLWSDPT 539 (679)
Q Consensus 525 ~~~~~~~dlLWsDP~ 539 (679)
.....+++|+++.
T Consensus 145 --~~~~~~~~w~~~~ 157 (207)
T cd07424 145 --PEDIEELLWSRTR 157 (207)
T ss_pred --cccceeeeeccch
Confidence 1245678998764
No 29
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.81 E-value=9.3e-20 Score=189.42 Aligned_cols=82 Identities=30% Similarity=0.455 Sum_probs=66.4
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCC-CeEEecCCcccchh
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPE-NVHLIRGNHEAADI 454 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~-~v~lLrGNHE~~~~ 454 (679)
.+++||||||+++.|.++|+.+.............+||||||||||++|.||+.+|++++..+|. .+++|+||||.+.+
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 68999999999999999998764321100001127999999999999999999999999999886 68899999998876
Q ss_pred hhh
Q 005755 455 NAL 457 (679)
Q Consensus 455 ~~~ 457 (679)
...
T Consensus 83 ~fL 85 (304)
T cd07421 83 AFL 85 (304)
T ss_pred hHh
Confidence 654
No 30
>PHA02239 putative protein phosphatase
Probab=99.80 E-value=3.7e-19 Score=182.42 Aligned_cols=140 Identities=25% Similarity=0.397 Sum_probs=100.7
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCC--CCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccch
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~--~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
.+++||||||++..|.++++.+... +.+ .+||||||||||++|.||+.+|+.+.. .+.++++|+||||.+.
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~ 74 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEF 74 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHH
Confidence 4799999999999999999987532 222 799999999999999999999999753 4568999999999987
Q ss_pred hhhhcCC--------------hHHHHHHhCCCcc---------------------------chhhhhhhhhhccCCceEE
Q 005755 454 INALFGF--------------RLECIERMGENDG---------------------------IWAWTRFNQLFNCLPLAAL 492 (679)
Q Consensus 454 ~~~~~gf--------------~~e~~~~~~~~~~---------------------------~~~~~~~~~~f~~LPlaa~ 492 (679)
++...+. ..+.+..||-... ...+..+..|++.||+...
T Consensus 75 l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~ 154 (235)
T PHA02239 75 YNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYK 154 (235)
T ss_pred HHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEE
Confidence 6543211 1223334432100 0122445568899999988
Q ss_pred EcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCC
Q 005755 493 IEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDP 538 (679)
Q Consensus 493 i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP 538 (679)
.+ +++|||||+.|.. |++. +...+|+|.+.
T Consensus 155 ~~-~~ifVHAGi~p~~-----------~~~~----q~~~~llWiR~ 184 (235)
T PHA02239 155 ED-KYIFSHSGGVSWK-----------PVEE----QTIDQLIWSRD 184 (235)
T ss_pred EC-CEEEEeCCCCCCC-----------Chhh----CCHhHeEEecc
Confidence 74 6999999998862 2221 13458899984
No 31
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.77 E-value=1.5e-18 Score=176.32 Aligned_cols=120 Identities=25% Similarity=0.300 Sum_probs=87.0
Q ss_pred CCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchh
Q 005755 375 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 454 (679)
Q Consensus 375 ~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~ 454 (679)
+++.||||||||+..|.++|+.+.+.+..+ .++|||||||||++|.||+.+|.+ .+++.||||||.+.+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987653332 799999999999999999999854 378999999999888
Q ss_pred hhhcCChHHHHHHhCCC-------ccchhhhhhhhhhccCCceEEEc---CcEEEecCCcC
Q 005755 455 NALFGFRLECIERMGEN-------DGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 505 (679)
Q Consensus 455 ~~~~gf~~e~~~~~~~~-------~~~~~~~~~~~~f~~LPlaa~i~---~~ilcvHgGi~ 505 (679)
.....-....+...|.. ........+..+++.||+...+. .++++||||++
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 75422111112111110 00012223455889999998763 47899999983
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=180.78 Aligned_cols=137 Identities=25% Similarity=0.430 Sum_probs=117.3
Q ss_pred eeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCCeE
Q 005755 5 ASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAV 84 (679)
Q Consensus 5 A~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v 84 (679)
+.+..+..||+|||++.....+++.+ .++..+.+|......+.+|++|.+|++++++++||||||....... ..++
T Consensus 117 ~~~~~~~~l~lfGG~~~~~~~~~~l~-~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~---~ndl 192 (482)
T KOG0379|consen 117 SLSAVGDKLYLFGGTDKKYRNLNELH-SLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDS---LNDL 192 (482)
T ss_pred eEEEECCeEEEEccccCCCCChhheE-eccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccc---eeee
Confidence 33555689999999996555566665 6788999999998888899999999999999999999999765533 3459
Q ss_pred EEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCC-CCCCcCcEEEEeCCCCccc
Q 005755 85 AVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK-GDILLDDFLVAENSPFQSD 160 (679)
Q Consensus 85 ~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~-~~~~l~dl~~~D~~~~~~~ 160 (679)
|+||+++.+|.++. +.+..|++|.+ |+++++++++||+||.. ++..++|+|.+|+++|+|.
T Consensus 193 ~i~d~~~~~W~~~~--~~g~~P~pR~g-------------H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~ 254 (482)
T KOG0379|consen 193 HIYDLETSTWSELD--TQGEAPSPRYG-------------HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWK 254 (482)
T ss_pred eeeccccccceecc--cCCCCCCCCCC-------------ceEEEECCeEEEEeccccCCceecceEeeecccceee
Confidence 99999999999999 77888765555 99999999999999988 7789999999999998876
No 33
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.66 E-value=3.1e-16 Score=157.52 Aligned_cols=147 Identities=18% Similarity=0.297 Sum_probs=118.9
Q ss_pred eeeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCccc---
Q 005755 3 ATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIE--- 79 (679)
Q Consensus 3 hsA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~--- 79 (679)
|||+...| .||||||...+-..++.....++..+.+|+.+...|.+|.-|..|+++++++.||||||+.+.....-
T Consensus 133 HsAcV~gn-~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~ 211 (392)
T KOG4693|consen 133 HSACVWGN-QMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIH 211 (392)
T ss_pred ceeeEECc-EEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchh
Confidence 78877755 68999999866555556666789999999999988999999999999999999999999975432211
Q ss_pred --CCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCC--CCcCcEEEEeCC
Q 005755 80 --GEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGD--ILLDDFLVAENS 155 (679)
Q Consensus 80 --~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~--~~l~dl~~~D~~ 155 (679)
.-..+.++|+.|..|.+.+ ..+..|. .|..|++++++++||+|||+.+. .-++|+|+||..
T Consensus 212 e~Yc~~i~~ld~~T~aW~r~p--~~~~~P~-------------GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~ 276 (392)
T KOG4693|consen 212 EQYCDTIMALDLATGAWTRTP--ENTMKPG-------------GRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPK 276 (392)
T ss_pred hhhcceeEEEeccccccccCC--CCCcCCC-------------cccccceEEEcceEEEecccchhhhhhhcceeecccc
Confidence 1245889999999999986 4444442 45669999999999999999875 568999999999
Q ss_pred CCccccCCCC
Q 005755 156 PFQSDVNSPL 165 (679)
Q Consensus 156 ~~~~~~~~~~ 165 (679)
+..|+.+.+.
T Consensus 277 t~~W~~I~~~ 286 (392)
T KOG4693|consen 277 TSMWSVISVR 286 (392)
T ss_pred cchheeeecc
Confidence 9888877763
No 34
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.64 E-value=1.2e-15 Score=175.10 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=124.2
Q ss_pred eeeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCC
Q 005755 3 ATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEA 82 (679)
Q Consensus 3 hsA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~ 82 (679)
|.+++..++.||++||.+.....+ +....|+++.++|..+. +++.+|..|++++++|.||++||.++.. ...
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l-~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~----~l~ 396 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRL-SSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK----SLN 396 (571)
T ss_pred cccEEEECCEEEEEccccCCCccc-ceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc----ccc
Confidence 456688889999999999533344 44557999999987654 7999999999999999999999998533 245
Q ss_pred eEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCC-CcCcEEEEeCCC--Ccc
Q 005755 83 AVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDI-LLDDFLVAENSP--FQS 159 (679)
Q Consensus 83 ~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~-~l~dl~~~D~~~--~~~ 159 (679)
++++||+++++|..+++| +++|+.|++++++++||++||.++.. .++++++||..+ |..
T Consensus 397 svE~YDp~~~~W~~va~m------------------~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 397 SVECYDPVTNKWTPVAPM------------------LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred cEEEecCCCCcccccCCC------------------CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 699999999999999988 56788999999999999999998887 999999999665 555
Q ss_pred ccCCCCccCCCCCcccCCcc
Q 005755 160 DVNSPLLTSERAPTHTGSKV 179 (679)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (679)
...++....+...++.+++|
T Consensus 459 ~~~M~~~R~~~g~a~~~~~i 478 (571)
T KOG4441|consen 459 IAPMNTRRSGFGVAVLNGKI 478 (571)
T ss_pred cCCcccccccceEEEECCEE
Confidence 55666667777777777655
No 35
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.63 E-value=4.3e-15 Score=167.77 Aligned_cols=159 Identities=20% Similarity=0.288 Sum_probs=122.0
Q ss_pred eeeeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCC
Q 005755 2 YATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGE 81 (679)
Q Consensus 2 yhsA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~ 81 (679)
.|+|+.. +..+|||||.........-.+.+++.....|....+.|..|.+|++|++++++++||+|||.......+
T Consensus 63 ~hs~~~~-~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~--- 138 (482)
T KOG0379|consen 63 GHSAVLI-GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNL--- 138 (482)
T ss_pred ccceeEE-CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCCh---
Confidence 4677666 778999999986544322124467777778888888899999999999999999999999997534333
Q ss_pred CeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCC-CcCcEEEEeCCCCccc
Q 005755 82 AAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDI-LLDDFLVAENSPFQSD 160 (679)
Q Consensus 82 ~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~-~l~dl~~~D~~~~~~~ 160 (679)
.+++.||+.|++|..+. ..+..|. +|.+|++++++.+||||||..... .++|+|+||+.+.+|
T Consensus 139 ~~l~~~d~~t~~W~~l~--~~~~~P~-------------~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W- 202 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLS--PTGDPPP-------------PRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTW- 202 (482)
T ss_pred hheEeccCCCCcEEEec--CcCCCCC-------------CcccceEEEECCEEEEECCccCcccceeeeeeeccccccc-
Confidence 44999999999999998 4454444 455599999999999999998776 999999999988764
Q ss_pred cCCCCccCCCCCcccCCcccccCCCCCCC
Q 005755 161 VNSPLLTSERAPTHTGSKVNQTNLGYVTT 189 (679)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (679)
.+..+....+.+|++|....
T Consensus 203 ---------~~~~~~g~~P~pR~gH~~~~ 222 (482)
T KOG0379|consen 203 ---------SELDTQGEAPSPRYGHAMVV 222 (482)
T ss_pred ---------eecccCCCCCCCCCCceEEE
Confidence 34444444555677666553
No 36
>PLN02153 epithiospecifier protein
Probab=99.61 E-value=1.5e-14 Score=156.48 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=103.6
Q ss_pred eeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCC--CCCCCCCcceEEEEECCEEEEEecccCCCCcc--cC
Q 005755 5 ASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP--GVAPSPRYQHAAVFVGARLHVTGGALRGGRAI--EG 80 (679)
Q Consensus 5 A~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~--g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~--~~ 80 (679)
+++..+++||||||.+... .+++.+ .+++.+++|+.+... ...|.+|+.|++++++++|||+||.+..+... ..
T Consensus 80 ~~~~~~~~iyv~GG~~~~~-~~~~v~-~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 157 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKR-EFSDFY-SYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPER 157 (341)
T ss_pred EEEEECCEEEEECCCCCCC-ccCcEE-EEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcc
Confidence 4466688999999987543 355654 689999999877532 12488999999999999999999986432110 11
Q ss_pred CCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCC-----C---CCcCcEEEE
Q 005755 81 EAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-----D---ILLDDFLVA 152 (679)
Q Consensus 81 ~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~-----~---~~l~dl~~~ 152 (679)
..++++||+++++|..++.+ +..+ .+|..|++++++++|||+||... + ..++++++|
T Consensus 158 ~~~v~~yd~~~~~W~~l~~~--~~~~-------------~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~y 222 (341)
T PLN02153 158 FRTIEAYNIADGKWVQLPDP--GENF-------------EKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFF 222 (341)
T ss_pred cceEEEEECCCCeEeeCCCC--CCCC-------------CCCCcceEEEECCeEEEEeccccccccCCccceecCceEEE
Confidence 34699999999999998844 2222 24666999999999999999752 1 236889999
Q ss_pred eCCCCccccC
Q 005755 153 ENSPFQSDVN 162 (679)
Q Consensus 153 D~~~~~~~~~ 162 (679)
|..+-+|+..
T Consensus 223 d~~~~~W~~~ 232 (341)
T PLN02153 223 DPASGKWTEV 232 (341)
T ss_pred EcCCCcEEec
Confidence 9887666543
No 37
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.61 E-value=6.1e-15 Score=169.34 Aligned_cols=134 Identities=21% Similarity=0.306 Sum_probs=113.9
Q ss_pred eeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCCeE
Q 005755 5 ASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAV 84 (679)
Q Consensus 5 A~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v 84 (679)
+.+..+|+||+.||++... .+ +....|++..+.|+.+. +++.+|++|++++++++||++||.++.... ..++
T Consensus 375 ~v~~l~g~iYavGG~dg~~-~l-~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~---l~sv 446 (571)
T KOG4441|consen 375 GVAVLDGKLYAVGGFDGEK-SL-NSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGSSNC---LNSV 446 (571)
T ss_pred eeEEECCEEEEEecccccc-cc-ccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCCccc---cceE
Confidence 4578899999999999443 33 56778999999997775 788899999999999999999999775432 4569
Q ss_pred EEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEEEEeCCCCccccCCC
Q 005755 85 AVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSP 164 (679)
Q Consensus 85 ~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~~~D~~~~~~~~~~~ 164 (679)
++|||.+++|..+++| .++|..|++++++++||++||+++...++.+++||..+-+|+...+
T Consensus 447 e~YDP~t~~W~~~~~M------------------~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 447 ECYDPETNTWTLIAPM------------------NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEEcCCCCceeecCCc------------------ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 9999999999999999 6788889999999999999999997788889999988766665543
No 38
>PLN02153 epithiospecifier protein
Probab=99.60 E-value=2.1e-14 Score=155.35 Aligned_cols=139 Identities=18% Similarity=0.153 Sum_probs=100.8
Q ss_pred eeeeEEeCCEEEEEcccCCCCCC-ccceEEEEeCCCCcEEEEeCCCCCCC-CCcceEEEEECCEEEEEecccCCCCcccC
Q 005755 3 ATASARSDGMFLLCGGRDASGAP-LADAYGLLMHRNGQWEWTLAPGVAPS-PRYQHAAVFVGARLHVTGGALRGGRAIEG 80 (679)
Q Consensus 3 hsA~~~~ng~l~vfGG~~~~~~~-l~d~~~l~~~~~~~W~wv~~~g~~P~-pR~~Hsaavvg~~LyV~GG~~~~~~~~~~ 80 (679)
|++ +..++.||||||.+..... .++. ..+++..++|+.+...+..|. .+..|++++++++||||||..... .
T Consensus 26 h~~-~~~~~~iyv~GG~~~~~~~~~~~~-~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~-~--- 99 (341)
T PLN02153 26 HGI-AVVGDKLYSFGGELKPNEHIDKDL-YVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR-E--- 99 (341)
T ss_pred ceE-EEECCEEEEECCccCCCCceeCcE-EEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC-c---
Confidence 544 4557899999999654333 3454 478988888976654343443 345899999999999999986432 2
Q ss_pred CCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCC------CCcCcEEEEeC
Q 005755 81 EAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGD------ILLDDFLVAEN 154 (679)
Q Consensus 81 ~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~------~~l~dl~~~D~ 154 (679)
..++++||+++++|..++++.....| .+|+.|++++++++|||+||.+.. ..++++++||.
T Consensus 100 ~~~v~~yd~~t~~W~~~~~~~~~~~p-------------~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~ 166 (341)
T PLN02153 100 FSDFYSYDTVKNEWTFLTKLDEEGGP-------------EARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI 166 (341)
T ss_pred cCcEEEEECCCCEEEEeccCCCCCCC-------------CCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence 34599999999999998765222222 357779999999999999998643 24678999998
Q ss_pred CCCccc
Q 005755 155 SPFQSD 160 (679)
Q Consensus 155 ~~~~~~ 160 (679)
.+-+|+
T Consensus 167 ~~~~W~ 172 (341)
T PLN02153 167 ADGKWV 172 (341)
T ss_pred CCCeEe
Confidence 775554
No 39
>PHA02713 hypothetical protein; Provisional
Probab=99.60 E-value=1.1e-14 Score=167.40 Aligned_cols=154 Identities=12% Similarity=0.117 Sum_probs=116.8
Q ss_pred eeeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCc-----
Q 005755 3 ATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRA----- 77 (679)
Q Consensus 3 hsA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~----- 77 (679)
+.+++..+|+||++||.+... .+ +....|++.+++|..+. ++|.+|..|++++++++|||+||.++....
T Consensus 344 ~~~~~~~~g~IYviGG~~~~~-~~-~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQNGTN-VE-RTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred ceeEEEECCEEEEECCcCCCC-CC-ceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCcccccccccc
Confidence 445677899999999986432 23 45678999999997665 799999999999999999999998642110
Q ss_pred ---------ccCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCC-CcC
Q 005755 78 ---------IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDI-LLD 147 (679)
Q Consensus 78 ---------~~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~-~l~ 147 (679)
.....++++|||++++|+.++++ ..+|+.|++++++++|||+||.++.. ..+
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m------------------~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~ 480 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF------------------WTGTIRPGVVSHKDDIYVVCDIKDEKNVKT 480 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCC------------------CcccccCcEEEECCEEEEEeCCCCCCccce
Confidence 00135699999999999999987 45677899999999999999987543 345
Q ss_pred cEEEEeCCC---CccccCCCCccCCCCCcccCCcc
Q 005755 148 DFLVAENSP---FQSDVNSPLLTSERAPTHTGSKV 179 (679)
Q Consensus 148 dl~~~D~~~---~~~~~~~~~~~~~~~~~~~~~~~ 179 (679)
.+++||..+ |..-..+|.+......+...++|
T Consensus 481 ~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~i 515 (557)
T PHA02713 481 CIFRYNTNTYNGWELITTTESRLSALHTILHDNTI 515 (557)
T ss_pred eEEEecCCCCCCeeEccccCcccccceeEEECCEE
Confidence 689999765 65555666666666666666555
No 40
>PHA02713 hypothetical protein; Provisional
Probab=99.60 E-value=1.4e-14 Score=166.52 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=111.0
Q ss_pred eeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCCe
Q 005755 4 TASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAA 83 (679)
Q Consensus 4 sA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~ 83 (679)
.+++..++.|||+||.+.....+++ ...|++..+.|..+. ++|.+|..|++++++++|||+||..+.. ...+
T Consensus 297 ~~~a~l~~~IYviGG~~~~~~~~~~-v~~Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~----~~~s 368 (557)
T PHA02713 297 YASAIVDNEIIIAGGYNFNNPSLNK-VYKINIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTN----VERT 368 (557)
T ss_pred eEEEEECCEEEEEcCCCCCCCccce-EEEEECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCC----CCce
Confidence 3456678999999998643334444 446899888886443 7899999999999999999999985432 1346
Q ss_pred EEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCC------------------C
Q 005755 84 VAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDI------------------L 145 (679)
Q Consensus 84 v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~------------------~ 145 (679)
+++||+.+++|..++++ ..+|+.|++++++++|||+||.++.. .
T Consensus 369 ve~Ydp~~~~W~~~~~m------------------p~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 369 IECYTMGDDKWKMLPDM------------------PIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred EEEEECCCCeEEECCCC------------------CcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence 99999999999999987 44677799999999999999986421 3
Q ss_pred cCcEEEEeCCCCccccCCC--CccCCCCCcccCCcc
Q 005755 146 LDDFLVAENSPFQSDVNSP--LLTSERAPTHTGSKV 179 (679)
Q Consensus 146 l~dl~~~D~~~~~~~~~~~--~~~~~~~~~~~~~~~ 179 (679)
++++++||+.+=+|+...| .+......+..+++|
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~I 466 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDI 466 (557)
T ss_pred cceEEEECCCCCeEeecCCCCcccccCcEEEECCEE
Confidence 6789999977644443343 344444444555444
No 41
>PLN02193 nitrile-specifier protein
Probab=99.59 E-value=2.4e-14 Score=161.51 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=106.4
Q ss_pred eeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCCeE
Q 005755 5 ASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAV 84 (679)
Q Consensus 5 A~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v 84 (679)
+++..+++||||||.+.. ..+++.| .+++.+++|+.+...+..|.+|+.|++++++++|||+||.+... ...++
T Consensus 223 ~~v~~~~~lYvfGG~~~~-~~~ndv~-~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~----~~~~~ 296 (470)
T PLN02193 223 RMVSIGSTLYVFGGRDAS-RQYNGFY-SFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA----RLKTL 296 (470)
T ss_pred EEEEECCEEEEECCCCCC-CCCccEE-EEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC----CcceE
Confidence 446678899999998754 3456666 67999999988764455689999999999999999999986432 13459
Q ss_pred EEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEEEEeCCCCccccC
Q 005755 85 AVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVN 162 (679)
Q Consensus 85 ~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~~~D~~~~~~~~~ 162 (679)
++||+.+++|..++. .+..| .+|+.|++++++++|||+||.++. .++++++||..+.+|+..
T Consensus 297 ~~yd~~t~~W~~~~~--~~~~~-------------~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~ 358 (470)
T PLN02193 297 DSYNIVDKKWFHCST--PGDSF-------------SIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQV 358 (470)
T ss_pred EEEECCCCEEEeCCC--CCCCC-------------CCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEe
Confidence 999999999998873 22222 256679999999999999998754 479999999888666544
No 42
>PLN02193 nitrile-specifier protein
Probab=99.59 E-value=3.2e-14 Score=160.51 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=105.8
Q ss_pred eeeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCC-CCcceEEEEECCEEEEEecccCCCCcccCC
Q 005755 3 ATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPS-PRYQHAAVFVGARLHVTGGALRGGRAIEGE 81 (679)
Q Consensus 3 hsA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~-pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~ 81 (679)
|++ +..++.||||||.......+.+.+..+++...+|+.+...+..|. .|..|++++++++||||||..... . .
T Consensus 169 h~~-~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~---~ 243 (470)
T PLN02193 169 HGI-AQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-Q---Y 243 (470)
T ss_pred cEE-EEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-C---C
Confidence 555 455789999999864433333334468888889986655555665 467899999999999999986432 2 3
Q ss_pred CeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEEEEeCCCCcccc
Q 005755 82 AAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDV 161 (679)
Q Consensus 82 ~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~~~D~~~~~~~~ 161 (679)
+++++||+.+++|.+++++. ..| .+|+.|++++++++|||+||.+....+.++++||..+-+|+.
T Consensus 244 ndv~~yD~~t~~W~~l~~~~--~~P-------------~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVE--EGP-------------TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred ccEEEEECCCCEEEEcCcCC--CCC-------------CCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 45999999999999988542 122 256679999999999999999888888999999988766654
No 43
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.57 E-value=5.8e-14 Score=150.66 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=101.9
Q ss_pred eeeeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEE--EEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCccc
Q 005755 2 YATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWE--WTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIE 79 (679)
Q Consensus 2 yhsA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~--wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~ 79 (679)
||++ +..++.||++||.+... .+++.+ .++..+.+|+ |...+ ++|.+|..|++++++++|||+||..... .
T Consensus 65 ~~~~-~~~~~~lyviGG~~~~~-~~~~v~-~~d~~~~~w~~~~~~~~-~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~-- 137 (323)
T TIGR03548 65 YGAS-VSVENGIYYIGGSNSSE-RFSSVY-RITLDESKEELICETIG-NLPFTFENGSACYKDGTLYVGGGNRNGK-P-- 137 (323)
T ss_pred ceEE-EEECCEEEEEcCCCCCC-CceeEE-EEEEcCCceeeeeeEcC-CCCcCccCceEEEECCEEEEEeCcCCCc-c--
Confidence 4544 45578999999987533 355555 5677778884 54443 7899999999999999999999975432 2
Q ss_pred CCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEEEEeCCCCcc
Q 005755 80 GEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQS 159 (679)
Q Consensus 80 ~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~~~D~~~~~~ 159 (679)
..++++||+.+++|++++++ | ..+|..|++++++++|||+||.++.. ..|+++||..+-+|
T Consensus 138 -~~~v~~yd~~~~~W~~~~~~-----p------------~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W 198 (323)
T TIGR03548 138 -SNKSYLFNLETQEWFELPDF-----P------------GEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQW 198 (323)
T ss_pred -CceEEEEcCCCCCeeECCCC-----C------------CCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCee
Confidence 35699999999999998865 1 12466799999999999999987543 46789999887555
Q ss_pred ccCC
Q 005755 160 DVNS 163 (679)
Q Consensus 160 ~~~~ 163 (679)
+...
T Consensus 199 ~~~~ 202 (323)
T TIGR03548 199 QKVA 202 (323)
T ss_pred EECC
Confidence 4433
No 44
>PHA03098 kelch-like protein; Provisional
Probab=99.55 E-value=5.1e-14 Score=161.17 Aligned_cols=133 Identities=15% Similarity=0.141 Sum_probs=102.9
Q ss_pred eeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCCe
Q 005755 4 TASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAA 83 (679)
Q Consensus 4 sA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~ 83 (679)
.+++..++.||++||.+.. ..+++ ...+++.+++|+... ++|.||+.|++++++++|||+||....... ..+
T Consensus 336 ~~~~~~~~~lyv~GG~~~~-~~~~~-v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~---~~~ 407 (534)
T PHA03098 336 PGVTVFNNRIYVIGGIYNS-ISLNT-VESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDEL---LKT 407 (534)
T ss_pred ceEEEECCEEEEEeCCCCC-Eecce-EEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcc---cce
Confidence 3446678999999998743 33434 457899999997654 688999999999999999999997543322 356
Q ss_pred EEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCC---CcCcEEEEeCCCCccc
Q 005755 84 VAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDI---LLDDFLVAENSPFQSD 160 (679)
Q Consensus 84 v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~---~l~dl~~~D~~~~~~~ 160 (679)
+++||+.+++|..++++ ..+|+.|++++++++|||+||..... .++++++||..+-+|+
T Consensus 408 v~~yd~~t~~W~~~~~~------------------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 408 VECFSLNTNKWSKGSPL------------------PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred EEEEeCCCCeeeecCCC------------------CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 99999999999998866 23566699999999999999986432 3677999997765554
Q ss_pred cC
Q 005755 161 VN 162 (679)
Q Consensus 161 ~~ 162 (679)
..
T Consensus 470 ~~ 471 (534)
T PHA03098 470 EL 471 (534)
T ss_pred eC
Confidence 33
No 45
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.55 E-value=2.4e-14 Score=151.43 Aligned_cols=144 Identities=21% Similarity=0.359 Sum_probs=112.3
Q ss_pred CEEEEEcccCCCCC---CccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEEC-CEEEEEecccCCCC--cccCCCeE
Q 005755 11 GMFLLCGGRDASGA---PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVG-ARLHVTGGALRGGR--AIEGEAAV 84 (679)
Q Consensus 11 g~l~vfGG~~~~~~---~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg-~~LyV~GG~~~~~~--~~~~~~~v 84 (679)
..|++|||...+++ ..||+| .|+.+.+.|..+..| ..|+||..|.++++- +.||+|||...... .+--..++
T Consensus 79 eELilfGGEf~ngqkT~vYndLy-~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~ 156 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHVYNDLY-SYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDL 156 (521)
T ss_pred ceeEEecceeecceeEEEeeeee-EEeccccceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhe
Confidence 47999999876543 345655 688899999999877 688899999888885 89999999743211 11124569
Q ss_pred EEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCC----CCcCcEEEEeCCCCccc
Q 005755 85 AVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGD----ILLDDFLVAENSPFQSD 160 (679)
Q Consensus 85 ~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~----~~l~dl~~~D~~~~~~~ 160 (679)
|+||..+++|.++.. .+ -|++|+| |.+++...+|+||||+... .+++|||+||.++++|+
T Consensus 157 W~fd~~trkweql~~--~g-~PS~RSG-------------HRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 157 WLFDLKTRKWEQLEF--GG-GPSPRSG-------------HRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred eeeeeccchheeecc--CC-CCCCCcc-------------ceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 999999999999983 33 4555666 9999999999999998543 57999999999999998
Q ss_pred cCCCCccCCCCCc
Q 005755 161 VNSPLLTSERAPT 173 (679)
Q Consensus 161 ~~~~~~~~~~~~~ 173 (679)
...| +++|.++-
T Consensus 221 Klep-sga~PtpR 232 (521)
T KOG1230|consen 221 KLEP-SGAGPTPR 232 (521)
T ss_pred eccC-CCCCCCCC
Confidence 8888 45455443
No 46
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.54 E-value=2.7e-14 Score=143.71 Aligned_cols=141 Identities=18% Similarity=0.274 Sum_probs=109.3
Q ss_pred eeeeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCC
Q 005755 2 YATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGE 81 (679)
Q Consensus 2 yhsA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~ 81 (679)
|........+++||+|||+.+...+| .+..+++++..|...+..|..|.+|.+|+|+++++.||||||...... .-+
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN-~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~--~FS 156 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACN-LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQ--RFS 156 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccc-eeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHH--hhh
Confidence 44445566779999999987666654 455689999999999999999999999999999999999999854322 114
Q ss_pred CeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCC---------CCcCcEEEE
Q 005755 82 AAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGD---------ILLDDFLVA 152 (679)
Q Consensus 82 ~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~---------~~l~dl~~~ 152 (679)
.+++++|+.|.+|+.+. ..+.+|. =|-.|+++++++.||||||.... .+.+.+..+
T Consensus 157 ~d~h~ld~~TmtWr~~~--Tkg~Ppr-------------wRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~l 221 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMH--TKGDPPR-------------WRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMAL 221 (392)
T ss_pred ccceeEeccceeeeehh--ccCCCch-------------hhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEE
Confidence 46999999999999988 5555553 34459999999999999997532 345667778
Q ss_pred eCCCCccc
Q 005755 153 ENSPFQSD 160 (679)
Q Consensus 153 D~~~~~~~ 160 (679)
|..+-.|+
T Consensus 222 d~~T~aW~ 229 (392)
T KOG4693|consen 222 DLATGAWT 229 (392)
T ss_pred eccccccc
Confidence 87764443
No 47
>PHA03098 kelch-like protein; Provisional
Probab=99.54 E-value=9.9e-14 Score=158.78 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=104.9
Q ss_pred eeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCCeE
Q 005755 5 ASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAV 84 (679)
Q Consensus 5 A~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v 84 (679)
+++..++.||++||.+......++.+ .+++.+++|..+. .+|.+|..|++++++++|||+||..+.. ...++
T Consensus 289 ~~~~~~~~lyv~GG~~~~~~~~~~v~-~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~----~~~~v 360 (534)
T PHA03098 289 GSVVLNNVIYFIGGMNKNNLSVNSVV-SYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSI----SLNTV 360 (534)
T ss_pred eEEEECCEEEEECCCcCCCCeeccEE-EEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCCE----ecceE
Confidence 55677889999999986655555555 6888888885443 6888999999999999999999986422 24569
Q ss_pred EEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCC-CCCcCcEEEEeCCCCccccCC
Q 005755 85 AVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-DILLDDFLVAENSPFQSDVNS 163 (679)
Q Consensus 85 ~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~-~~~l~dl~~~D~~~~~~~~~~ 163 (679)
++||+.+++|..++++ ..+|+.|++++++++|||+||... +..++++++||..+-+|+...
T Consensus 361 ~~yd~~~~~W~~~~~l------------------p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 361 ESWKPGESKWREEPPL------------------IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred EEEcCCCCceeeCCCc------------------CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 9999999999998866 335777999999999999999754 356799999997765544333
No 48
>PHA02790 Kelch-like protein; Provisional
Probab=99.53 E-value=8.5e-14 Score=157.45 Aligned_cols=121 Identities=17% Similarity=0.342 Sum_probs=100.7
Q ss_pred eeeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCC
Q 005755 3 ATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEA 82 (679)
Q Consensus 3 hsA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~ 82 (679)
+.+++..+|+||++||.+.. . +....+++.+++|+.+. ++|.||+.|++++++++|||+||.
T Consensus 355 ~~~~~~~~g~IYviGG~~~~--~--~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~IYv~GG~----------- 416 (480)
T PHA02790 355 NPAVASINNVIYVIGGHSET--D--TTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRRLFLVGRN----------- 416 (480)
T ss_pred ccEEEEECCEEEEecCcCCC--C--ccEEEEeCCCCEEEeCC---CCCCccccceEEEECCEEEEECCc-----------
Confidence 44567789999999998643 1 34567899999997764 689999999999999999999983
Q ss_pred eEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEEEEeCCCCccc
Q 005755 83 AVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSD 160 (679)
Q Consensus 83 ~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~~~D~~~~~~~ 160 (679)
+.+||+++++|+.++++ ..+|..|++++++++|||+||.+++..++.+++||..+=+|+
T Consensus 417 -~e~ydp~~~~W~~~~~m------------------~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 417 -AEFYCESSNTWTLIDDP------------------IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred -eEEecCCCCcEeEcCCC------------------CCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence 56899999999999877 346777999999999999999987666788999998775553
No 49
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.51 E-value=4.1e-13 Score=144.12 Aligned_cols=134 Identities=14% Similarity=0.086 Sum_probs=99.1
Q ss_pred eeeEEeCCEEEEEcccCCCCCCc---------cceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCC
Q 005755 4 TASARSDGMFLLCGGRDASGAPL---------ADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRG 74 (679)
Q Consensus 4 sA~~~~ng~l~vfGG~~~~~~~l---------~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~ 74 (679)
..++..++.|||+||.+....++ ++.+. ++.....|+|...+ .+|.+|..|++++++++|||+||....
T Consensus 7 ~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~-~~~~~~~~~W~~~~-~lp~~r~~~~~~~~~~~lyviGG~~~~ 84 (323)
T TIGR03548 7 CYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYI-AKDENSNLKWVKDG-QLPYEAAYGASVSVENGIYYIGGSNSS 84 (323)
T ss_pred EeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEE-EecCCCceeEEEcc-cCCccccceEEEEECCEEEEEcCCCCC
Confidence 34477888999999987654322 34443 33233445666654 789999888889999999999998643
Q ss_pred CCcccCCCeEEEEECCCCcE----EecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEE
Q 005755 75 GRAIEGEAAVAVLDTAAGVW----LDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFL 150 (679)
Q Consensus 75 ~~~~~~~~~v~vyD~~t~~W----~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~ 150 (679)
. ...++++||+.+.+| ..++++ ..+|+.|++++++++|||+||...+..+++++
T Consensus 85 ~----~~~~v~~~d~~~~~w~~~~~~~~~l------------------p~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~ 142 (323)
T TIGR03548 85 E----RFSSVYRITLDESKEELICETIGNL------------------PFTFENGSACYKDGTLYVGGGNRNGKPSNKSY 142 (323)
T ss_pred C----CceeEEEEEEcCCceeeeeeEcCCC------------------CcCccCceEEEECCEEEEEeCcCCCccCceEE
Confidence 2 245699999999998 455544 23566799999999999999987666789999
Q ss_pred EEeCCCCcccc
Q 005755 151 VAENSPFQSDV 161 (679)
Q Consensus 151 ~~D~~~~~~~~ 161 (679)
+||..+-+|+.
T Consensus 143 ~yd~~~~~W~~ 153 (323)
T TIGR03548 143 LFNLETQEWFE 153 (323)
T ss_pred EEcCCCCCeeE
Confidence 99987755543
No 50
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.51 E-value=1.2e-13 Score=146.13 Aligned_cols=145 Identities=22% Similarity=0.266 Sum_probs=117.2
Q ss_pred eeeeEEeCCEEEEEcccCCCC-----CCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCc
Q 005755 3 ATASARSDGMFLLCGGRDASG-----APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRA 77 (679)
Q Consensus 3 hsA~~~~ng~l~vfGG~~~~~-----~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~ 77 (679)
|.|++...+.+|||||...+- -...|+| +++..+..|+.+..+| .|+||.+|-+++...+|++|||.....+.
T Consensus 125 hq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W-~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~ 202 (521)
T KOG1230|consen 125 HQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW-LFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRD 202 (521)
T ss_pred ceeEEeccCeEEEeccccCCcchhhhhhhhhee-eeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCc
Confidence 667777778999999987532 1346777 6788889999999886 89999999999999999999998765554
Q ss_pred ccCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEE-CCEEEEEcCCCC---------CCCcC
Q 005755 78 IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI-GVRIYIYGGLKG---------DILLD 147 (679)
Q Consensus 78 ~~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~-~g~IYV~GG~~~---------~~~l~ 147 (679)
....++||+||+++-+|.++. +.+.-|.+|+| |.+.+. .+.|||+||++- +...+
T Consensus 203 y~YyNDvy~FdLdtykW~Kle--psga~PtpRSG-------------cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hs 267 (521)
T KOG1230|consen 203 YIYYNDVYAFDLDTYKWSKLE--PSGAGPTPRSG-------------CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHS 267 (521)
T ss_pred eEEeeeeEEEeccceeeeecc--CCCCCCCCCCc-------------ceEEecCCCcEEEEcchhHhhhhhhhhcCceee
Confidence 555778999999999999999 45656766777 888888 899999999853 35789
Q ss_pred cEEEEeCCC-----CccccCCC
Q 005755 148 DFLVAENSP-----FQSDVNSP 164 (679)
Q Consensus 148 dl~~~D~~~-----~~~~~~~~ 164 (679)
||+.++... |+|+...|
T Consensus 268 Dmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 268 DMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred eeeeecCCcCCCcceeEeeccC
Confidence 999998666 88764444
No 51
>PHA02790 Kelch-like protein; Provisional
Probab=99.48 E-value=4.4e-13 Score=151.65 Aligned_cols=124 Identities=23% Similarity=0.240 Sum_probs=97.8
Q ss_pred eEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCCeEE
Q 005755 6 SARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVA 85 (679)
Q Consensus 6 ~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v~ 85 (679)
.+..++.||++||.+.. ..++..+ .|++..+.|..+. ++|.+|..|++++++++||++||..+ ..+++
T Consensus 267 ~~~~~~~lyviGG~~~~-~~~~~v~-~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~-------~~sve 334 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN-EIHNNAI-AVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN-------PTSVE 334 (480)
T ss_pred eEEECCEEEEEcCCCCC-CcCCeEE-EEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC-------CCceE
Confidence 45578899999998643 2333444 6899888886554 68899999999999999999999743 13489
Q ss_pred EEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEEEEeCCCCcccc
Q 005755 86 VLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDV 161 (679)
Q Consensus 86 vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~~~D~~~~~~~~ 161 (679)
.||+.+++|..++++ ..+|+.|++++++++|||+||.++. .+.+++||+.+-+|+.
T Consensus 335 ~ydp~~n~W~~~~~l------------------~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~ 390 (480)
T PHA02790 335 RWFHGDAAWVNMPSL------------------LKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQF 390 (480)
T ss_pred EEECCCCeEEECCCC------------------CCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEe
Confidence 999999999999877 3467779999999999999998644 3678899976644443
No 52
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.42 E-value=2.3e-12 Score=139.52 Aligned_cols=131 Identities=14% Similarity=0.159 Sum_probs=93.8
Q ss_pred eeeeEEeCCEEEEEcccCCCC-----CCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEE-EECCEEEEEecccCCC-
Q 005755 3 ATASARSDGMFLLCGGRDASG-----APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAV-FVGARLHVTGGALRGG- 75 (679)
Q Consensus 3 hsA~~~~ng~l~vfGG~~~~~-----~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaa-vvg~~LyV~GG~~~~~- 75 (679)
+.+++..++.|||+||..... ..+++.+ .|++..++|+.+.. .+|.+|++|+++ +++++|||+||.....
T Consensus 56 ~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~-~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~ 132 (346)
T TIGR03547 56 QAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVY-RYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIF 132 (346)
T ss_pred cceEEEECCEEEEEeCCCCCCCCCcceecccEE-EEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHH
Confidence 345567789999999986432 1355555 68999999987642 467788888777 7899999999975310
Q ss_pred -Ccc----------------------------cCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceE
Q 005755 76 -RAI----------------------------EGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHA 126 (679)
Q Consensus 76 -~~~----------------------------~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Ha 126 (679)
... ....++++||+.+++|+.++++ | ..+|+.|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~-----p------------~~~r~~~~ 195 (346)
T TIGR03547 133 DGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN-----P------------FLGTAGSA 195 (346)
T ss_pred HHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC-----C------------CCcCCCce
Confidence 000 0025699999999999998866 1 12467799
Q ss_pred EEEECCEEEEEcCCCCCC-CcCcEEEEe
Q 005755 127 SASIGVRIYIYGGLKGDI-LLDDFLVAE 153 (679)
Q Consensus 127 a~~~~g~IYV~GG~~~~~-~l~dl~~~D 153 (679)
+++++++|||+||..... ...++++||
T Consensus 196 ~~~~~~~iyv~GG~~~~~~~~~~~~~y~ 223 (346)
T TIGR03547 196 IVHKGNKLLLINGEIKPGLRTAEVKQYL 223 (346)
T ss_pred EEEECCEEEEEeeeeCCCccchheEEEE
Confidence 999999999999986443 335566665
No 53
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.40 E-value=5.2e-12 Score=136.70 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=92.9
Q ss_pred eeEEeCCEEEEEcccCCCCCCccceEEEEeC--CCCcEEEEeCCCCCC-CCCcceEEEEECCEEEEEecccCCCC--ccc
Q 005755 5 ASARSDGMFLLCGGRDASGAPLADAYGLLMH--RNGQWEWTLAPGVAP-SPRYQHAAVFVGARLHVTGGALRGGR--AIE 79 (679)
Q Consensus 5 A~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~--~~~~W~wv~~~g~~P-~pR~~Hsaavvg~~LyV~GG~~~~~~--~~~ 79 (679)
+++..++.|||+||... ++ +..++. ..++|..+. ++| .+|..|++++++++|||+||...... ...
T Consensus 12 ~~~~~~~~vyv~GG~~~-----~~-~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~ 82 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAG-----TS-WYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQ 82 (346)
T ss_pred eEEEECCEEEEEccccC-----Ce-eEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcce
Confidence 34566889999999742 23 335564 446676543 577 58999999999999999999853210 001
Q ss_pred CCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEE-EECCEEEEEcCCCCC---------------
Q 005755 80 GEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASA-SIGVRIYIYGGLKGD--------------- 143 (679)
Q Consensus 80 ~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~-~~~g~IYV~GG~~~~--------------- 143 (679)
...++++||+.+++|++++.. .| ..|+.|+++ +++++|||+||.++.
T Consensus 83 ~~~~v~~Yd~~~~~W~~~~~~----~p-------------~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 145 (346)
T TIGR03547 83 VFDDVYRYDPKKNSWQKLDTR----SP-------------VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKD 145 (346)
T ss_pred ecccEEEEECCCCEEecCCCC----CC-------------CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCcc
Confidence 134599999999999998621 12 134557776 789999999998642
Q ss_pred -------------------CCcCcEEEEeCCCCccccCCC
Q 005755 144 -------------------ILLDDFLVAENSPFQSDVNSP 164 (679)
Q Consensus 144 -------------------~~l~dl~~~D~~~~~~~~~~~ 164 (679)
..++++++||..+-+|+...|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~ 185 (346)
T TIGR03547 146 SEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE 185 (346)
T ss_pred chhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc
Confidence 124789999987755554443
No 54
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.34 E-value=6.9e-12 Score=135.40 Aligned_cols=139 Identities=24% Similarity=0.390 Sum_probs=105.9
Q ss_pred eeeeeEE-----eCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccC---
Q 005755 2 YATASAR-----SDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALR--- 73 (679)
Q Consensus 2 yhsA~~~-----~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~--- 73 (679)
-|+|... ...+||||||.. +..|.|.|. ++.++..|......|..|.||.-|+++++|++||||||+.-
T Consensus 202 SHTAViY~eKDs~~skmvvyGGM~--G~RLgDLW~-Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~ 278 (830)
T KOG4152|consen 202 SHTAVIYTEKDSKKSKMVVYGGMS--GCRLGDLWT-LDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVM 278 (830)
T ss_pred cceeEEEEeccCCcceEEEEcccc--cccccceeE-EecceeecccccccCCCCCCcccccceeecceeEEecceeeeec
Confidence 3788744 236899999997 678889996 57788889888888999999999999999999999999841
Q ss_pred -CCC------cccCCCeEEEEECCCCcEEecccC--cCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCC--
Q 005755 74 -GGR------AIEGEAAVAVLDTAAGVWLDRNGL--VTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-- 142 (679)
Q Consensus 74 -~~~------~~~~~~~v~vyD~~t~~W~~i~~~--~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~-- 142 (679)
... -....+++.+++..+..|..+-.- .....|- +|..|.+++++.+||++-|.++
T Consensus 279 ~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR-------------~RAGHCAvAigtRlYiWSGRDGYr 345 (830)
T KOG4152|consen 279 DDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPR-------------ARAGHCAVAIGTRLYIWSGRDGYR 345 (830)
T ss_pred cccccccccceeeeccceeeeeecchheeeeeecccccccccc-------------ccccceeEEeccEEEEEeccchhh
Confidence 000 011256788999999999887421 1111332 4666999999999999999876
Q ss_pred -----CCCcCcEEEEeCCC
Q 005755 143 -----DILLDDFLVAENSP 156 (679)
Q Consensus 143 -----~~~l~dl~~~D~~~ 156 (679)
.....|+|-+|+..
T Consensus 346 KAwnnQVCCkDlWyLdTek 364 (830)
T KOG4152|consen 346 KAWNNQVCCKDLWYLDTEK 364 (830)
T ss_pred HhhccccchhhhhhhcccC
Confidence 25678888888765
No 55
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.33 E-value=1.5e-11 Score=134.99 Aligned_cols=138 Identities=16% Similarity=0.209 Sum_probs=94.4
Q ss_pred eeeeEEeCCEEEEEcccCC-C----CCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEE-ECCEEEEEecccCCC-
Q 005755 3 ATASARSDGMFLLCGGRDA-S----GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF-VGARLHVTGGALRGG- 75 (679)
Q Consensus 3 hsA~~~~ng~l~vfGG~~~-~----~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaav-vg~~LyV~GG~~~~~- 75 (679)
+.+++..++.||||||... . ...+++.| .|++..++|+.+.. ..|.+|+.|++++ .+++|||+||.....
T Consensus 77 ~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~-~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~ 153 (376)
T PRK14131 77 QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVY-KYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIF 153 (376)
T ss_pred cceEEEECCEEEEEcCCCCCCCCCceeEcccEE-EEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHH
Confidence 3445677899999999864 1 12344555 68988888977642 3577788898777 899999999974310
Q ss_pred -Ccc----------------------------cCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceE
Q 005755 76 -RAI----------------------------EGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHA 126 (679)
Q Consensus 76 -~~~----------------------------~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Ha 126 (679)
... .-..++++||+.+++|..+.++ | ..+|+.|+
T Consensus 154 ~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~-----p------------~~~~~~~a 216 (376)
T PRK14131 154 DGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES-----P------------FLGTAGSA 216 (376)
T ss_pred HHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC-----C------------CCCCCcce
Confidence 000 0124699999999999998755 1 12466699
Q ss_pred EEEECCEEEEEcCCCCC-CCcCcEEEE--eCCCCccc
Q 005755 127 SASIGVRIYIYGGLKGD-ILLDDFLVA--ENSPFQSD 160 (679)
Q Consensus 127 a~~~~g~IYV~GG~~~~-~~l~dl~~~--D~~~~~~~ 160 (679)
+++++++|||+||.... ....+++.+ |..+.+|+
T Consensus 217 ~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~ 253 (376)
T PRK14131 217 VVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ 253 (376)
T ss_pred EEEECCEEEEEeeeECCCcCChhheEEEecCCCccee
Confidence 99999999999997443 345566654 44444444
No 56
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.31 E-value=3.1e-11 Score=132.52 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=83.2
Q ss_pred eeeeEEeCCEEEEEcccCCCC--------------------------------CCccceEEEEeCCCCcEEEEeCCCCCC
Q 005755 3 ATASARSDGMFLLCGGRDASG--------------------------------APLADAYGLLMHRNGQWEWTLAPGVAP 50 (679)
Q Consensus 3 hsA~~~~ng~l~vfGG~~~~~--------------------------------~~l~d~~~l~~~~~~~W~wv~~~g~~P 50 (679)
|++.+..+++||++||.+... ....+.+..|++..+.|..+. ++|
T Consensus 132 ~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p 208 (376)
T PRK14131 132 HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESP 208 (376)
T ss_pred eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCC
Confidence 455455899999999986310 001245668999999997654 566
Q ss_pred C-CCcceEEEEECCEEEEEecccCCCCcccCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEE
Q 005755 51 S-PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASAS 129 (679)
Q Consensus 51 ~-pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~ 129 (679)
. +|..|++++++++|||+||....+.... ....+.||+++++|.+++++ |.+|.+ .....++.+.+++
T Consensus 209 ~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~-~~~~~~~~~~~~~W~~~~~~-----p~~~~~-----~~~~~~~~~~a~~ 277 (376)
T PRK14131 209 FLGTAGSAVVIKGNKLWLINGEIKPGLRTD-AVKQGKFTGNNLKWQKLPDL-----PPAPGG-----SSQEGVAGAFAGY 277 (376)
T ss_pred CCCCCcceEEEECCEEEEEeeeECCCcCCh-hheEEEecCCCcceeecCCC-----CCCCcC-----CcCCccceEecee
Confidence 4 7889999999999999999754321111 11234568899999999876 222322 0001223455678
Q ss_pred ECCEEEEEcCCC
Q 005755 130 IGVRIYIYGGLK 141 (679)
Q Consensus 130 ~~g~IYV~GG~~ 141 (679)
++++|||+||.+
T Consensus 278 ~~~~iyv~GG~~ 289 (376)
T PRK14131 278 SNGVLLVAGGAN 289 (376)
T ss_pred ECCEEEEeeccC
Confidence 899999999975
No 57
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.24 E-value=2.9e-11 Score=130.73 Aligned_cols=152 Identities=22% Similarity=0.363 Sum_probs=113.5
Q ss_pred eCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCC------CCCCCCCcceEEEEECCEEEEEecccCCCCc-----
Q 005755 9 SDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP------GVAPSPRYQHAAVFVGARLHVTGGALRGGRA----- 77 (679)
Q Consensus 9 ~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~------g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~----- 77 (679)
...+||+|||....+.+.||.|. ....+|+|-... |.+|-||-+|+..+++++.|+|||..+....
T Consensus 90 dGtrilvFGGMvEYGkYsNdLYE---LQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNv 166 (830)
T KOG4152|consen 90 DGTRILVFGGMVEYGKYSNDLYE---LQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNV 166 (830)
T ss_pred cCceEEEEccEeeeccccchHHH---hhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCccccc
Confidence 34789999999988888888654 456789887664 7788899999999999999999998543211
Q ss_pred ccCCCeEEEEECCCC----cEEecccCcCCCCCCCCCCCCCCccccccccceEEEEE------CCEEEEEcCCCCCCCcC
Q 005755 78 IEGEAAVAVLDTAAG----VWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI------GVRIYIYGGLKGDILLD 147 (679)
Q Consensus 78 ~~~~~~v~vyD~~t~----~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~------~g~IYV~GG~~~~~~l~ 147 (679)
-...+++++++..-+ -|.... ..|..|.+|-+ |+++++ ..+||||||++ +..+.
T Consensus 167 PrYLnDlY~leL~~Gsgvv~W~ip~--t~Gv~P~pRES-------------HTAViY~eKDs~~skmvvyGGM~-G~RLg 230 (830)
T KOG4152|consen 167 PRYLNDLYILELRPGSGVVAWDIPI--TYGVLPPPRES-------------HTAVIYTEKDSKKSKMVVYGGMS-GCRLG 230 (830)
T ss_pred chhhcceEEEEeccCCceEEEeccc--ccCCCCCCccc-------------ceeEEEEeccCCcceEEEEcccc-ccccc
Confidence 112455888887744 388766 66776655555 999998 46899999996 45689
Q ss_pred cEEEEeCCCCccc-----cCCCCccCCCCCcccCCcc
Q 005755 148 DFLVAENSPFQSD-----VNSPLLTSERAPTHTGSKV 179 (679)
Q Consensus 148 dl~~~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 179 (679)
|+|-+|..++.|. -..|.+.+-++++.+..|+
T Consensus 231 DLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKM 267 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKM 267 (830)
T ss_pred ceeEEecceeecccccccCCCCCCcccccceeeccee
Confidence 9999998876665 3456666777777665444
No 58
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.09 E-value=5.2e-10 Score=104.45 Aligned_cols=77 Identities=29% Similarity=0.361 Sum_probs=57.0
Q ss_pred CeEEEccCCCCHHHH---HHHH-HHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHH--HHHHHhcCCCeEEecCCc
Q 005755 376 PVKVFGDLHGQFGDL---MRLF-DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLL--LALKIEYPENVHLIRGNH 449 (679)
Q Consensus 376 pi~ViGDIHG~~~dL---~~l~-~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL--~~lk~~~P~~v~lLrGNH 449 (679)
+|.++||+|+.+... .+.+ ........+ .+|++||++|++..+.+..... +..+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 488999999999987 3333 222222222 6899999999999988877765 566667778999999999
Q ss_pred ccchhhhhc
Q 005755 450 EAADINALF 458 (679)
Q Consensus 450 E~~~~~~~~ 458 (679)
|.......+
T Consensus 76 D~~~~~~~~ 84 (200)
T PF00149_consen 76 DYYSGNSFY 84 (200)
T ss_dssp SSHHHHHHH
T ss_pred ccceecccc
Confidence 998766544
No 59
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=99.01 E-value=6.7e-10 Score=103.52 Aligned_cols=147 Identities=35% Similarity=0.502 Sum_probs=118.1
Q ss_pred hhhhhcCChHHHHHHhCCCccchhhhh---hhhhhccCCceEEEcC-cEEEecCCcCCCC-CCHHHhhhccCCc--ccCC
Q 005755 453 DINALFGFRLECIERMGENDGIWAWTR---FNQLFNCLPLAALIEK-KIICMHGGIGRSI-HSVEQIEKLERPI--TMDA 525 (679)
Q Consensus 453 ~~~~~~gf~~e~~~~~~~~~~~~~~~~---~~~~f~~LPlaa~i~~-~ilcvHgGi~p~l-~~l~~I~~i~Rp~--~~~~ 525 (679)
.++..+|+.++|...++.. ..|.. +.++|+.||+.+++++ .++|.|+++++.+ ..+++++.+.|.. ....
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 3556788888888777542 35666 9999999999999988 9999999999976 6788888887765 3333
Q ss_pred CcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccC
Q 005755 526 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 605 (679)
Q Consensus 526 ~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~ 605 (679)
.+ ...+.+|+++... ....|.+++||.+. .| .+....|+..+....+.|+|+.+..++...+.+..+|.|++++||
T Consensus 79 ~g-~~~~~~~~~~~~~-~~~~w~~~~~g~~~-~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 79 AG-HTHDLLWSDPDGG-DRRIWNPGPRGVPR-DG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cc-ccccccCCCCCCC-cccccccCCCCCCc-cc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 33 4566699998742 24679999999983 34 688888998888888999999999999987776899999999998
Q ss_pred C
Q 005755 606 G 606 (679)
Q Consensus 606 ~ 606 (679)
.
T Consensus 155 ~ 155 (155)
T COG0639 155 Y 155 (155)
T ss_pred C
Confidence 3
No 60
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.74 E-value=3.1e-07 Score=87.83 Aligned_cols=59 Identities=25% Similarity=0.373 Sum_probs=47.7
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccc
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 452 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~ 452 (679)
++.++||+||++..+.++++.+.. .+ .++++||+++++.... + .....+++++||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~--~~~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------L--ELKAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------h--hcCCcEEEEeCCCCCc
Confidence 478999999999999999998754 22 7999999999998765 1 2234699999999974
No 61
>PRK09453 phosphodiesterase; Provisional
Probab=98.71 E-value=4.4e-08 Score=96.71 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=52.1
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC--------cHHHHHHHHHHHHhcCCCeEEecC
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH--------SLETITLLLALKIEYPENVHLIRG 447 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~--------slevl~lL~~lk~~~P~~v~lLrG 447 (679)
++.|++|+||++..|.++++.+.....+ .++++||++|+|++ ..|++.+|..+ ...+++++|
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~G 71 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRG 71 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEcc
Confidence 4789999999999999998876433233 79999999999873 45666666443 347999999
Q ss_pred Ccccch
Q 005755 448 NHEAAD 453 (679)
Q Consensus 448 NHE~~~ 453 (679)
|||...
T Consensus 72 NhD~~~ 77 (182)
T PRK09453 72 NCDSEV 77 (182)
T ss_pred CCcchh
Confidence 999743
No 62
>PF13964 Kelch_6: Kelch motif
Probab=98.71 E-value=3.5e-08 Score=76.51 Aligned_cols=46 Identities=33% Similarity=0.561 Sum_probs=39.9
Q ss_pred CCcceEEEEECCEEEEEecccCCCCcccCCCeEEEEECCCCcEEecccC
Q 005755 52 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 100 (679)
Q Consensus 52 pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v~vyD~~t~~W~~i~~~ 100 (679)
||.+|++++++++|||+||...... ..+++++||+++++|+++++|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~---~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGK---YSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCC---ccccEEEEcCCCCcEEECCCC
Confidence 7999999999999999999976422 245699999999999999977
No 63
>PLN02772 guanylate kinase
Probab=98.67 E-value=1.2e-07 Score=103.31 Aligned_cols=90 Identities=20% Similarity=0.312 Sum_probs=73.7
Q ss_pred CCCCCCCcceEEEEECCEEEEEecccCCCCcccCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceE
Q 005755 47 GVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHA 126 (679)
Q Consensus 47 g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Ha 126 (679)
|.-+.||..|+++.+++++|||||++..+... ..+++||+.+++|.... +.|..|.+|-| |+
T Consensus 19 ~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~---~~v~i~D~~t~~W~~P~--V~G~~P~~r~G-------------hS 80 (398)
T PLN02772 19 GFGVKPKNRETSVTIGDKTYVIGGNHEGNTLS---IGVQILDKITNNWVSPI--VLGTGPKPCKG-------------YS 80 (398)
T ss_pred CccCCCCCcceeEEECCEEEEEcccCCCcccc---ceEEEEECCCCcEeccc--ccCCCCCCCCc-------------ce
Confidence 34566899999999999999999987754333 34999999999999988 78888887777 99
Q ss_pred EEEE-CCEEEEEcCCCCCCCcCcEEEEeCCC
Q 005755 127 SASI-GVRIYIYGGLKGDILLDDFLVAENSP 156 (679)
Q Consensus 127 a~~~-~g~IYV~GG~~~~~~l~dl~~~D~~~ 156 (679)
++++ +++|+|+++..+. -+++|.+...+
T Consensus 81 a~v~~~~rilv~~~~~~~--~~~~w~l~~~t 109 (398)
T PLN02772 81 AVVLNKDRILVIKKGSAP--DDSIWFLEVDT 109 (398)
T ss_pred EEEECCceEEEEeCCCCC--ccceEEEEcCC
Confidence 9999 5899999986544 37888887554
No 64
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.66 E-value=3.5e-07 Score=86.76 Aligned_cols=60 Identities=30% Similarity=0.495 Sum_probs=43.5
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccch
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
+|.++||+|++...+.++++.+. ..+ .++++||++|+ .+++.++..+ .++.++||||...
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~--~~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYIN--EPD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHT--TES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred EEEEEeCCCCChhHHHHHHHHhc--CCC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 47899999999999999999882 122 68889999993 7777777554 6999999999644
No 65
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.58 E-value=1.2e-07 Score=73.39 Aligned_cols=46 Identities=35% Similarity=0.632 Sum_probs=38.4
Q ss_pred CCcceEEEEECCEEEEEecc--cCCCCcccCCCeEEEEECCCCcEEecccC
Q 005755 52 PRYQHAAVFVGARLHVTGGA--LRGGRAIEGEAAVAVLDTAAGVWLDRNGL 100 (679)
Q Consensus 52 pR~~Hsaavvg~~LyV~GG~--~~~~~~~~~~~~v~vyD~~t~~W~~i~~~ 100 (679)
||++|++++++++|||+||. .... ....++++||+++++|++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~---~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGG---SSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCC---cccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 2222 2355699999999999998854
No 66
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.54 E-value=2e-06 Score=82.90 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=45.7
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCC-CCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCccc
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA 451 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~-~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~ 451 (679)
.+.|++|+||++..+..+++..... ..+ .++++||++ +.+++.+|..+. ..++.++||||.
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 4789999999998777666655433 223 789999999 467777775542 359999999997
No 67
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.51 E-value=1.6e-07 Score=71.57 Aligned_cols=46 Identities=33% Similarity=0.520 Sum_probs=38.9
Q ss_pred CCcceEEEEECCEEEEEecccCCCCcccCCCeEEEEECCCCcEEecccC
Q 005755 52 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 100 (679)
Q Consensus 52 pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v~vyD~~t~~W~~i~~~ 100 (679)
||+.|++++++++|||+||...... ...++++||+++++|.++++|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~---~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQ---PTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSS---BEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCc---eeeeEEEEeCCCCEEEEcCCC
Confidence 6999999999999999999977332 245699999999999999865
No 68
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.49 E-value=1e-06 Score=82.66 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=76.2
Q ss_pred eEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcH--HHHHHHHHHHHhcCCCeEEecCCcccchh
Q 005755 377 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL--ETITLLLALKIEYPENVHLIRGNHEAADI 454 (679)
Q Consensus 377 i~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~sl--evl~lL~~lk~~~P~~v~lLrGNHE~~~~ 454 (679)
+.++||+||++. .+ .....+ .+|++||+++++...- +.+.++..++ .| .+++++||||....
T Consensus 2 i~~isD~H~~~~----~~---~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~~ 65 (135)
T cd07379 2 FVCISDTHSRHR----TI---SIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTLD 65 (135)
T ss_pred EEEEeCCCCCCC----cC---cCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcCC
Confidence 789999999987 11 112222 6888999999986532 2344443332 22 36789999995311
Q ss_pred hhhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecc
Q 005755 455 NALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLL 534 (679)
Q Consensus 455 ~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlL 534 (679)
.-+.+|+++||.+.... +.+
T Consensus 66 -------------------------------------~~~~~ilv~H~~p~~~~-----------------------~~~ 85 (135)
T cd07379 66 -------------------------------------PEDTDILVTHGPPYGHL-----------------------DLV 85 (135)
T ss_pred -------------------------------------CCCCEEEEECCCCCcCc-----------------------ccc
Confidence 11346899998542210 000
Q ss_pred cCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceE
Q 005755 535 WSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 588 (679)
Q Consensus 535 WsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~ 588 (679)
+ + . ..+|.+.+.+++++.+.+++|-||.-.+.|++
T Consensus 86 ~--~----------------~-~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 86 S--S----------------G-QRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred c--c----------------C-cccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 0 0 0 23577889999999999999999999988887
No 69
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.44 E-value=1.8e-06 Score=88.65 Aligned_cols=113 Identities=20% Similarity=0.185 Sum_probs=70.9
Q ss_pred CeEEEccCCCCHHHHH-HHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchh
Q 005755 376 PVKVFGDLHGQFGDLM-RLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 454 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~-~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~ 454 (679)
.|.++|||||++.... +.++..+ .+ .+||+||+++. +.+++..|..+ +..++.++||||....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~---pD------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ---PD------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC---CC------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 4789999999987642 3444332 12 79999999864 56776666554 3468999999997553
Q ss_pred hh---hcCCh------------------------------------------HHHHHHhCCCccchhhhhhhhhhccCCc
Q 005755 455 NA---LFGFR------------------------------------------LECIERMGENDGIWAWTRFNQLFNCLPL 489 (679)
Q Consensus 455 ~~---~~gf~------------------------------------------~e~~~~~~~~~~~~~~~~~~~~f~~LPl 489 (679)
.. .+... .++...|+ -...++.+..+++.++.
T Consensus 66 ~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fg---i~s~~eA~~~ive~~~~ 142 (238)
T cd07397 66 ATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYG---VISLEESAQRIIAAAKK 142 (238)
T ss_pred ccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhC---CCCHHHHHHHHHHHhhh
Confidence 21 00001 13444443 12344556677777764
Q ss_pred eEEEcCcEEEecCCcCCC
Q 005755 490 AALIEKKIICMHGGIGRS 507 (679)
Q Consensus 490 aa~i~~~ilcvHgGi~p~ 507 (679)
+...+..||+.|+++.-.
T Consensus 143 ~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 143 APPDLPLILLAHNGPSGL 160 (238)
T ss_pred cCCCCCeEEEeCcCCcCC
Confidence 444445799999998654
No 70
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.42 E-value=2.9e-07 Score=70.93 Aligned_cols=46 Identities=26% Similarity=0.538 Sum_probs=30.6
Q ss_pred CCcceEEEEE-CCEEEEEecccCCCCcccCCCeEEEEECCCCcEEecccC
Q 005755 52 PRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 100 (679)
Q Consensus 52 pR~~Hsaavv-g~~LyV~GG~~~~~~~~~~~~~v~vyD~~t~~W~~i~~~ 100 (679)
||++|+++.+ +++|||+||....+..+++ +|+||+++++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d---~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLND---LWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE------EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCC---EEEEECCCCEEEECCCC
Confidence 7999999998 4899999999765444444 99999999999998654
No 71
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.41 E-value=2.3e-06 Score=87.45 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=55.1
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccc
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 452 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~ 452 (679)
.|.+++||||++..|.++++.......+ .+|++||++++|+..-++..++..|. ..+..+++++||||..
T Consensus 6 kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~-~l~~pv~~V~GNhD~~ 75 (224)
T cd07388 6 YVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILG-EAHLPTFYVPGPQDAP 75 (224)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHH-hcCCceEEEcCCCChH
Confidence 5899999999999999999876322223 79999999999977767777766664 3334799999999975
No 72
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.39 E-value=3e-06 Score=76.50 Aligned_cols=117 Identities=23% Similarity=0.336 Sum_probs=82.6
Q ss_pred EEEccCCCCHHHHHHHH--HHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhh
Q 005755 378 KVFGDLHGQFGDLMRLF--DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 455 (679)
Q Consensus 378 ~ViGDIHG~~~dL~~l~--~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~ 455 (679)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 47999999999888765 222112122 68899999999998877766644444456678999999999
Q ss_pred hhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeeccc
Q 005755 456 ALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLW 535 (679)
Q Consensus 456 ~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLW 535 (679)
|+++|..+.+...... +
T Consensus 70 -----------------------------------------i~~~H~~~~~~~~~~~----------------------~ 86 (131)
T cd00838 70 -----------------------------------------ILLTHGPPYDPLDELS----------------------P 86 (131)
T ss_pred -----------------------------------------EEEeccCCCCCchhhc----------------------c
Confidence 8889988866421000 0
Q ss_pred CCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceE
Q 005755 536 SDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 588 (679)
Q Consensus 536 sDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~ 588 (679)
. .......+...+...+.+++|-||.-....+.
T Consensus 87 ~--------------------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 87 D--------------------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred c--------------------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 0 00145677888899999999999998766554
No 73
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.27 E-value=1.8e-06 Score=66.70 Aligned_cols=48 Identities=27% Similarity=0.561 Sum_probs=39.0
Q ss_pred CCEEEEEcccC-CCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEE
Q 005755 10 DGMFLLCGGRD-ASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV 61 (679)
Q Consensus 10 ng~l~vfGG~~-~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavv 61 (679)
+++||||||.+ .....++|.| .++..+..|+.+ +.+|.+|+.|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~-~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVW-VFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEE-EEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57899999999 4566777877 678888888755 579999999999874
No 74
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.23 E-value=2.5e-06 Score=65.84 Aligned_cols=48 Identities=31% Similarity=0.462 Sum_probs=35.9
Q ss_pred CCEEEEEecccC-CCCcccCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEE
Q 005755 62 GARLHVTGGALR-GGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI 130 (679)
Q Consensus 62 g~~LyV~GG~~~-~~~~~~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~ 130 (679)
+++||||||... .... .+++|+||+.+++|+++..+ |. +|+.|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~---~nd~~~~~~~~~~W~~~~~~-----P~-------------~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTR---LNDVWVFDLDTNTWTRIGDL-----PP-------------PRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCE---ecCEEEEECCCCEEEECCCC-----CC-------------CccceEEEEC
Confidence 579999999972 3333 34599999999999998544 33 5666999864
No 75
>PF13854 Kelch_5: Kelch motif
Probab=98.23 E-value=2.4e-06 Score=63.92 Aligned_cols=41 Identities=37% Similarity=0.514 Sum_probs=33.6
Q ss_pred CCCCCcceEEEEECCEEEEEecccC-CCCcccCCCeEEEEECCCC
Q 005755 49 APSPRYQHAAVFVGARLHVTGGALR-GGRAIEGEAAVAVLDTAAG 92 (679)
Q Consensus 49 ~P~pR~~Hsaavvg~~LyV~GG~~~-~~~~~~~~~~v~vyD~~t~ 92 (679)
.|.+|+.|++++++++|||+||.+. ..... +++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~---~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYS---NDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEE---CcEEEEECCCC
Confidence 4889999999999999999999984 33333 45999998763
No 76
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.18 E-value=2.5e-06 Score=93.08 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=98.0
Q ss_pred CCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECC--EEEEEecccCCC--CcccCCCeEE
Q 005755 10 DGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGA--RLHVTGGALRGG--RAIEGEAAVA 85 (679)
Q Consensus 10 ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~--~LyV~GG~~~~~--~~~~~~~~v~ 85 (679)
++.+|++||.++- ..+.|.|. |....+.|.....-+..|..|.+|-++..-. +||+.|-..+.+ ...+.-.++|
T Consensus 272 ~~CiYLYGGWdG~-~~l~DFW~-Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW 349 (723)
T KOG2437|consen 272 TECVYLYGGWDGT-QDLADFWA-YSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFW 349 (723)
T ss_pred CcEEEEecCcccc-hhHHHHHh-hcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceE
Confidence 4589999999964 35678884 5656677987776677999999999998755 899999654322 1123345699
Q ss_pred EEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCE--EEEEcCCCC--C-CCcCcEEEEeCCCCc
Q 005755 86 VLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVR--IYIYGGLKG--D-ILLDDFLVAENSPFQ 158 (679)
Q Consensus 86 vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~--IYV~GG~~~--~-~~l~dl~~~D~~~~~ 158 (679)
+||..++.|.-++-- ... -.| +..-|.|.+++.+.+ ||||||..- + ..+.-+|.||+..-.
T Consensus 350 ~FDi~~~~W~~ls~d--t~~---dGG-------P~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~ 415 (723)
T KOG2437|consen 350 RFDIDTNTWMLLSED--TAA---DGG-------PKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQT 415 (723)
T ss_pred EEecCCceeEEeccc--ccc---cCC-------cceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCcc
Confidence 999999999987622 110 001 235678999999887 999999743 2 567889999977643
No 77
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.17 E-value=3.7e-06 Score=64.90 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=37.0
Q ss_pred cccceEEEEECCEEEEEcCC---CCCCCcCcEEEEeCCCCccccCC
Q 005755 121 RRCRHASASIGVRIYIYGGL---KGDILLDDFLVAENSPFQSDVNS 163 (679)
Q Consensus 121 ~R~~Haa~~~~g~IYV~GG~---~~~~~l~dl~~~D~~~~~~~~~~ 163 (679)
+|+.|++++++++|||+||. ......+|+++||+.+.+|+...
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 47889999999999999999 45578999999999998876443
No 78
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.16 E-value=7.2e-05 Score=73.87 Aligned_cols=57 Identities=28% Similarity=0.454 Sum_probs=41.2
Q ss_pred eEEEccCC-CCHH-----HHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcc
Q 005755 377 VKVFGDLH-GQFG-----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 450 (679)
Q Consensus 377 i~ViGDIH-G~~~-----dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE 450 (679)
|.||+|.| |.-. .+.++|+.. ..+ .++.+||+++ .+++.+|..++ ..++.++||||
T Consensus 2 i~viSDtHl~~~~~~~~~~~~~~~~~~---~~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D 63 (178)
T cd07394 2 VLVIGDLHIPHRASDLPAKFKKLLVPG---KIQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFD 63 (178)
T ss_pred EEEEEecCCCCCchhhHHHHHHHhccC---CCC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCC
Confidence 78999999 6543 355555541 122 7889999987 77777776552 25899999999
Q ss_pred c
Q 005755 451 A 451 (679)
Q Consensus 451 ~ 451 (679)
.
T Consensus 64 ~ 64 (178)
T cd07394 64 E 64 (178)
T ss_pred c
Confidence 6
No 79
>PF13964 Kelch_6: Kelch motif
Probab=98.12 E-value=5.3e-06 Score=64.21 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=37.8
Q ss_pred cccceEEEEECCEEEEEcCCCC-CCCcCcEEEEeCCCCccccCCC
Q 005755 121 RRCRHASASIGVRIYIYGGLKG-DILLDDFLVAENSPFQSDVNSP 164 (679)
Q Consensus 121 ~R~~Haa~~~~g~IYV~GG~~~-~~~l~dl~~~D~~~~~~~~~~~ 164 (679)
+|+.|++++++++|||+||... ...++++++||..+.+|+...|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence 4777999999999999999988 6889999999988877765444
No 80
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=98.08 E-value=8e-05 Score=72.81 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=44.1
Q ss_pred eEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCc-HHHHHHHHHHHHhcCCCeEEecCCcccch
Q 005755 377 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 377 i~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-levl~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
|.++|||||++..+.. ........+ -+|+.||++++|... .+.+..|. ..+..++.++||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~----~~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLL----AIGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHH----hcCCCEEEEcCCCCCHH
Confidence 5789999999998876 222111222 688999999999763 33332332 23456999999999754
No 81
>PF13854 Kelch_5: Kelch motif
Probab=98.04 E-value=8.5e-06 Score=60.97 Aligned_cols=37 Identities=32% Similarity=0.677 Sum_probs=32.7
Q ss_pred cccceEEEEECCEEEEEcCCCC--CCCcCcEEEEeCCCC
Q 005755 121 RRCRHASASIGVRIYIYGGLKG--DILLDDFLVAENSPF 157 (679)
Q Consensus 121 ~R~~Haa~~~~g~IYV~GG~~~--~~~l~dl~~~D~~~~ 157 (679)
+|+.|++++++++||||||..+ +..++|+|+||+.++
T Consensus 4 ~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 4 PRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 5777999999999999999984 678999999998763
No 82
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.98 E-value=2.5e-05 Score=82.89 Aligned_cols=114 Identities=21% Similarity=0.295 Sum_probs=77.4
Q ss_pred eeEEeCCEEEEEcccCCCCCCccceEEEEeCCCC--cEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCC-cccCC
Q 005755 5 ASARSDGMFLLCGGRDASGAPLADAYGLLMHRNG--QWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGR-AIEGE 81 (679)
Q Consensus 5 A~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~--~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~-~~~~~ 81 (679)
|++..+.++||-=|.. + ..|...+.++. .|+... ..+-.+|-+..+++++++||||||...... .+...
T Consensus 41 ~Ga~ig~~~YVGLGs~--G----~afy~ldL~~~~k~W~~~a--~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~ 112 (381)
T COG3055 41 AGALIGDTVYVGLGSA--G----TAFYVLDLKKPGKGWTKIA--DFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVF 112 (381)
T ss_pred ccceecceEEEEeccC--C----ccceehhhhcCCCCceEcc--cCCCcccccchheeeCCeEEEeeccccCCCCCceEe
Confidence 4566677888753422 2 12334444443 365443 234458999999999999999999853221 12335
Q ss_pred CeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECC-EEEEEcCCCCC
Q 005755 82 AAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGV-RIYIYGGLKGD 143 (679)
Q Consensus 82 ~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g-~IYV~GG~~~~ 143 (679)
+++++||+.+++|.++. +..|+. ..+ |+++.+++ +||++||.+..
T Consensus 113 nd~Y~y~p~~nsW~kl~--t~sP~g--l~G-------------~~~~~~~~~~i~f~GGvn~~ 158 (381)
T COG3055 113 NDAYRYDPSTNSWHKLD--TRSPTG--LVG-------------ASTFSLNGTKIYFFGGVNQN 158 (381)
T ss_pred eeeEEecCCCChhheec--cccccc--ccc-------------ceeEecCCceEEEEccccHH
Confidence 67999999999999998 334433 344 88899987 99999998753
No 83
>PLN02772 guanylate kinase
Probab=97.89 E-value=5.6e-05 Score=82.75 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=61.9
Q ss_pred eeeeeEEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEE-CCEEEEEecccCCCCcccC
Q 005755 2 YATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEG 80 (679)
Q Consensus 2 yhsA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavv-g~~LyV~GG~~~~~~~~~~ 80 (679)
+|+|.+.. .++|||||++..+... +.++.++..++.|......|..|.||.+|+++++ +++|+|+++-...
T Consensus 27 ~~tav~ig-dk~yv~GG~~d~~~~~-~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~------ 98 (398)
T PLN02772 27 RETSVTIG-DKTYVIGGNHEGNTLS-IGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP------ 98 (398)
T ss_pred cceeEEEC-CEEEEEcccCCCcccc-ceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC------
Confidence 57776664 5899999987644344 4455788877777766666999999999999999 5799999875331
Q ss_pred CCeEEEEECCCC
Q 005755 81 EAAVAVLDTAAG 92 (679)
Q Consensus 81 ~~~v~vyD~~t~ 92 (679)
..++|.+...|-
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 245888877664
No 84
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.88 E-value=0.00014 Score=67.91 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=39.4
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcc
Q 005755 378 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 450 (679)
Q Consensus 378 ~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE 450 (679)
.|++|.||..+.+.++.... ...+ .++++||+. .+++.++..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 38999999988777766642 2222 799999984 35556665542 235899999999
No 85
>smart00612 Kelch Kelch domain.
Probab=97.84 E-value=2.4e-05 Score=58.68 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=36.8
Q ss_pred EEEEEecccCCCCcccCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECC
Q 005755 64 RLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGV 132 (679)
Q Consensus 64 ~LyV~GG~~~~~~~~~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g 132 (679)
+|||+||.... .. ..++++||+++++|..++++ ..+|+.|+++++++
T Consensus 1 ~iyv~GG~~~~-~~---~~~v~~yd~~~~~W~~~~~~------------------~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QR---LKSVEVYDPETNKWTPLPSM------------------PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ce---eeeEEEECCCCCeEccCCCC------------------CCccccceEEEeCC
Confidence 48999998542 22 45699999999999998877 45677899988764
No 86
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.82 E-value=1.4e-05 Score=60.64 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=35.1
Q ss_pred cccceEEEEECCEEEEEcCCCC-CCCcCcEEEEeCCCCccc
Q 005755 121 RRCRHASASIGVRIYIYGGLKG-DILLDDFLVAENSPFQSD 160 (679)
Q Consensus 121 ~R~~Haa~~~~g~IYV~GG~~~-~~~l~dl~~~D~~~~~~~ 160 (679)
+|+.|++++++++|||+||.+. ...++++++||..+-+|+
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 41 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWE 41 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEE
Confidence 4788999999999999999988 788999999998876654
No 87
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.73 E-value=0.0026 Score=64.65 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=40.9
Q ss_pred eChhHHHHHHHHc-CCeEEEecccccccceEEe-----cCCeEEEEeeccccCCCCCC-eEEEEEEcCC-ceEEeEEecC
Q 005755 559 FGPDRVSDFCKRN-KLQLIIRAHECVMDGFERF-----AQGQLITLFSATNYCGTANN-AGAILVVGRG-LVVVPKLIHP 630 (679)
Q Consensus 559 fg~~~~~~fl~~n-~l~~IiRgHe~v~~G~~~~-----~~~~liTvFSa~~Y~~~~~N-~ga~l~i~~~-~~~~~~~~~~ 630 (679)
.+...+.+.++++ ++++++-||.-. .+.... .++.+..+++....-...+| .=.++.++.+ ..+.++.+.|
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeCCC
Confidence 4566788889988 799999999654 333332 23445555443211111122 1145666665 4777777765
No 88
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.71 E-value=0.00011 Score=75.92 Aligned_cols=207 Identities=17% Similarity=0.223 Sum_probs=101.5
Q ss_pred CeEEEccCCCCH------HHHHHHHHHhCCCCCCCCCceeeEEEeccccCC-------CCCcHHHHHHHHHHHHhcCCCe
Q 005755 376 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-------GQHSLETITLLLALKIEYPENV 442 (679)
Q Consensus 376 pi~ViGDIHG~~------~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDR-------G~~slevl~lL~~lk~~~P~~v 442 (679)
++++++|+|... ..|+++++..... .+ .++++||++|. .+...+++.+|..|+. .+-.+
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~-~d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~-~g~~v 73 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEARQ-AD------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSD-SGVPC 73 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhhcc-CC------EEEEccceeccccccCcCCHHHHHHHHHHHHHHH-cCCeE
Confidence 578999999542 2355555432111 12 78899999985 2334567777777753 33479
Q ss_pred EEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEEEc-CcEEEecCCcCCCCCCH-HHhhhccC-
Q 005755 443 HLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSIHSV-EQIEKLER- 519 (679)
Q Consensus 443 ~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~-~~ilcvHgGi~p~l~~l-~~I~~i~R- 519 (679)
++++||||..... ...+..| . .++.. |....++ .+++++||-.-+.-... ..++++-|
T Consensus 74 ~~v~GNHD~~~~~-------~~~~~~g----~-------~~l~~-~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~ 134 (241)
T PRK05340 74 YFMHGNRDFLLGK-------RFAKAAG----M-------TLLPD-PSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRN 134 (241)
T ss_pred EEEeCCCchhhhH-------HHHHhCC----C-------EEeCC-cEEEEECCEEEEEECCcccccCCHHHHHHHHHHhC
Confidence 9999999974311 1111111 1 11111 2222333 46999999876532211 11223222
Q ss_pred CcccCCCcceeeecccCCCCCCCcc-CCCC-----CCC-CCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecC
Q 005755 520 PITMDAGSIILMDLLWSDPTENDSI-EGLR-----PNA-RGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQ 592 (679)
Q Consensus 520 p~~~~~~~~~~~dlLWsDP~~~~~~-~g~~-----~n~-Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~ 592 (679)
|... .-++.=.+...-.+ ..+. .+. +..-.....++.+.+.+++.+.+.+|-||.-.+.=.....+
T Consensus 135 ~~~~-------~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~ 207 (241)
T PRK05340 135 PWLQ-------WLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAG 207 (241)
T ss_pred HHHH-------HHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCC
Confidence 1100 00000000000000 0000 001 11112334667888999999999999999876543333223
Q ss_pred CeEEEEeeccccCCCCCCeEEEEEEcCC
Q 005755 593 GQLITLFSATNYCGTANNAGAILVVGRG 620 (679)
Q Consensus 593 ~~liTvFSa~~Y~~~~~N~ga~l~i~~~ 620 (679)
+.-++-.+-++. ...+.++.++.+
T Consensus 208 ~~~~~~~~lgdw----~~~~~~~~~~~~ 231 (241)
T PRK05340 208 GQPATRIVLGDW----HEQGSVLKVDAD 231 (241)
T ss_pred CcceEEEEeCCC----CCCCeEEEEECC
Confidence 211222222222 223677777765
No 89
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.70 E-value=0.00076 Score=63.47 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHcCCeEEEecccccccceE
Q 005755 560 GPDRVSDFCKRNKLQLIIRAHECVMDGFE 588 (679)
Q Consensus 560 g~~~~~~fl~~n~l~~IiRgHe~v~~G~~ 588 (679)
+.+.+.+++++.++++++-||.-....+.
T Consensus 101 ~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 101 DAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 55678889999999999999998765544
No 90
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.69 E-value=3.1e-05 Score=59.55 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=27.5
Q ss_pred cccceEEEEE-CCEEEEEcCCCCC-CCcCcEEEEeCCCCccccC
Q 005755 121 RRCRHASASI-GVRIYIYGGLKGD-ILLDDFLVAENSPFQSDVN 162 (679)
Q Consensus 121 ~R~~Haa~~~-~g~IYV~GG~~~~-~~l~dl~~~D~~~~~~~~~ 162 (679)
+|+.|+++.+ +++||||||.+.. ..++|+++||..+-+|+..
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 4888999999 5899999999876 6999999999888666543
No 91
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.69 E-value=1.1e-05 Score=88.58 Aligned_cols=238 Identities=11% Similarity=0.003 Sum_probs=161.0
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecC----CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCC
Q 005755 347 FLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 422 (679)
Q Consensus 347 ~l~~~~i~~L~~~~~~il~~ep~ll~l~~----pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~ 422 (679)
.|...++..+++.+.+++..+|+...+.+ -.+.++|.||.+.|+.++++.- | ... .-|++-|++++++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P-~~~----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--P-TYI----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--c-hhh----heeeeccHHHHhHH
Confidence 46778899999999999999998887743 4889999999999999988763 2 211 16999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEEEcCcEEEecC
Q 005755 423 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHG 502 (679)
Q Consensus 423 ~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~ilcvHg 502 (679)
...+.+..|...+...|+...+.|++||+..+-..++|..+....+++. +..++..+...+-. |++...++.++=-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~-~s~~~~~~~~~~~~-~i~~~y~g~~le~~- 163 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK-KSVVEMKIDEEDMD-LIESDYSGPVLEDH- 163 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC-cccccccccccccc-ccccccCCcccccc-
Confidence 9999999999999999999999999999999999999988877766543 22233323322222 14555544333222
Q ss_pred CcCCCCCCHHHhhh-----------------------------ccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCC
Q 005755 503 GIGRSIHSVEQIEK-----------------------------LERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARG 553 (679)
Q Consensus 503 Gi~p~l~~l~~I~~-----------------------------i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg 553 (679)
. .+++.+.. +.-++++. .-.|..|+++.... ..+-...++
T Consensus 164 ----k-vt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~----~~~d~~~sv~gd~h--Gqfydl~ni 232 (476)
T KOG0376|consen 164 ----K-VTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEIS----VPGDVKISVCGDTH--GQFYDLLNI 232 (476)
T ss_pred ----h-hhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEee----cCCCceEEecCCcc--ccccchhhh
Confidence 1 11222111 11122221 33467888886421 122333455
Q ss_pred CCceeeChhHHHHHHHHcCCeEEEecccccc-----------cc-eEEec---CCeEEEEeeccccCC
Q 005755 554 PGLVTFGPDRVSDFCKRNKLQLIIRAHECVM-----------DG-FERFA---QGQLITLFSATNYCG 606 (679)
Q Consensus 554 ~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~-----------~G-~~~~~---~~~liTvFSa~~Y~~ 606 (679)
-+ ...+++....||.+.++.-+++.|.-+. ++ |.... .+.+++||+++.+|-
T Consensus 233 f~-l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 233 FE-LNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred Hh-hcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 55 3457778888898888888888886541 21 21111 235899999999874
No 92
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.62 E-value=5e-05 Score=73.51 Aligned_cols=67 Identities=25% Similarity=0.217 Sum_probs=45.1
Q ss_pred eEEEccCCCCHHHHHHHHHH-hCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccc
Q 005755 377 VKVFGDLHGQFGDLMRLFDE-YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 452 (679)
Q Consensus 377 i~ViGDIHG~~~dL~~l~~~-~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~ 452 (679)
+.+++|||+....+...+.. ......+ -++++||+++++.....+. ++. ....+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~--~~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLL--ALKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHH--hhcCCccEEEeCCCcceE
Confidence 46899999998777655421 1111112 6888999999987665544 222 223456799999999985
No 93
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.52 E-value=0.00021 Score=75.30 Aligned_cols=69 Identities=19% Similarity=0.062 Sum_probs=48.1
Q ss_pred CeEEEccCCCC----HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCC--CCcHHHHHHHHHHHHhcCCCeEEecCCc
Q 005755 376 PVKVFGDLHGQ----FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG--QHSLETITLLLALKIEYPENVHLIRGNH 449 (679)
Q Consensus 376 pi~ViGDIHG~----~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG--~~slevl~lL~~lk~~~P~~v~lLrGNH 449 (679)
.|.+++|||.. ...+.++++...-...+ -++++|||+|++ ...-++..+|..|+... .++.+.|||
T Consensus 51 rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNH 122 (271)
T PRK11340 51 KILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNH 122 (271)
T ss_pred EEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCC
Confidence 48999999976 45567777665332222 688899999954 23345566677776544 499999999
Q ss_pred ccc
Q 005755 450 EAA 452 (679)
Q Consensus 450 E~~ 452 (679)
|..
T Consensus 123 D~~ 125 (271)
T PRK11340 123 DRP 125 (271)
T ss_pred Ccc
Confidence 963
No 94
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.43 E-value=0.00021 Score=72.20 Aligned_cols=69 Identities=29% Similarity=0.291 Sum_probs=48.2
Q ss_pred CeEEEccCCCCHH----HHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcH-HHHHHHHHHHHhcCCCeEEecCCcc
Q 005755 376 PVKVFGDLHGQFG----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-ETITLLLALKIEYPENVHLIRGNHE 450 (679)
Q Consensus 376 pi~ViGDIHG~~~----dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~sl-evl~lL~~lk~~~P~~v~lLrGNHE 450 (679)
.+.+++|+|+... .+.++++.......+ -+|++||++|.+.... ++..++..++ .+..++++.||||
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD 74 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHD 74 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCcc
Confidence 5889999998743 566666655322222 6888999999987765 4455554443 3456999999999
Q ss_pred cc
Q 005755 451 AA 452 (679)
Q Consensus 451 ~~ 452 (679)
..
T Consensus 75 ~~ 76 (223)
T cd07385 75 YY 76 (223)
T ss_pred cc
Confidence 74
No 95
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.35 E-value=0.0084 Score=58.98 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=42.6
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccch
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
.|.|++|.||...+..+..+.......+ .+|.+||++...... ++.-....+++.++||.|...
T Consensus 3 ~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~~--------~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 3 KILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTLD--------ALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred EEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccchH--------HhhcccccceEEEEccCCCcc
Confidence 4789999999996555555444333333 688899999865432 111102368999999999743
No 96
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.33 E-value=0.00049 Score=70.65 Aligned_cols=206 Identities=15% Similarity=0.180 Sum_probs=99.5
Q ss_pred eEEEccCCCCH------HHHHHHHHHhCCCCCCCCCceeeEEEeccccCCC-----CC--cHHHHHHHHHHHHhcCCCeE
Q 005755 377 VKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-----QH--SLETITLLLALKIEYPENVH 443 (679)
Q Consensus 377 i~ViGDIHG~~------~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG-----~~--slevl~lL~~lk~~~P~~v~ 443 (679)
+++++|+|... ..|++.+..... ..+ .++++||++|.. +. .-+++.+|..|+.. +..|+
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~-~~d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEAR-KAD------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999543 234555544321 122 688899999952 11 13456666666533 45799
Q ss_pred EecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEE-EcCcEEEecCCcCCCCC-CHHHhhhccC-C
Q 005755 444 LIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAAL-IEKKIICMHGGIGRSIH-SVEQIEKLER-P 520 (679)
Q Consensus 444 lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~-i~~~ilcvHgGi~p~l~-~l~~I~~i~R-p 520 (679)
++.||||...-. ...... +. .++.. +.... -+.+++++||-.-..-. ...-.+++-| |
T Consensus 73 ~v~GNHD~~~~~-------~~~~~~----gi-------~~l~~-~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~ 133 (231)
T TIGR01854 73 FMHGNRDFLIGK-------RFAREA----GM-------TLLPD-PSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQP 133 (231)
T ss_pred EEcCCCchhhhH-------HHHHHC----CC-------EEECC-CEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCH
Confidence 999999974211 001111 11 11111 11222 24689999997543211 1111222211 1
Q ss_pred ccc------CC-CcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCC
Q 005755 521 ITM------DA-GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQG 593 (679)
Q Consensus 521 ~~~------~~-~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~ 593 (679)
... +. ....+...+++..... ....+ .-.....+..++++++..+.+++|-||.-.+.=+.+..++
T Consensus 134 ~~~~~~~~l~~~~r~~l~~~~~~~s~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~ 206 (231)
T TIGR01854 134 WLQRLFLHLPLAVRVKLARKIRAESRAD---KQMKS----QDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADG 206 (231)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHh---cCCCc----chhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCC
Confidence 100 00 0001222233321110 00000 1123356778899999999999999999765434332233
Q ss_pred eEEEEeeccccCCCCCCeEEEEEEcCC
Q 005755 594 QLITLFSATNYCGTANNAGAILVVGRG 620 (679)
Q Consensus 594 ~liTvFSa~~Y~~~~~N~ga~l~i~~~ 620 (679)
.-++-+.-.+.. ..+.+++++++
T Consensus 207 ~~~~~~~lgdW~----~~~~~~~~~~~ 229 (231)
T TIGR01854 207 QPATRIVLGDWY----RQGSILRVDAD 229 (231)
T ss_pred CccEEEEECCCc----cCCeEEEEcCC
Confidence 222333333331 23556666553
No 97
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.0013 Score=70.15 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=87.7
Q ss_pred eeEEeCCEEEEEcccCCCC----CCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECC-EEEEEecccCCC----
Q 005755 5 ASARSDGMFLLCGGRDASG----APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGA-RLHVTGGALRGG---- 75 (679)
Q Consensus 5 A~~~~ng~l~vfGG~~~~~----~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~-~LyV~GG~~~~~---- 75 (679)
+.+..+++||+|||..... ..++|.+ .+++.+++|..+... .|....+|+++.+++ ++|++||++..-
T Consensus 87 ~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y-~y~p~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~y 163 (381)
T COG3055 87 VAAVIGGKLYVFGGYGKSVSSSPQVFNDAY-RYDPSTNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGY 163 (381)
T ss_pred hheeeCCeEEEeeccccCCCCCceEeeeeE-EecCCCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhh
Confidence 3477899999999986432 2355555 689999999877633 677788999999988 999999986210
Q ss_pred ------------------------C--cccCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEE
Q 005755 76 ------------------------R--AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASAS 129 (679)
Q Consensus 76 ------------------------~--~~~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~ 129 (679)
+ .......++.|||++++|+..... | -.++|..+.+.
T Consensus 164 f~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~-----p------------f~~~aGsa~~~ 226 (381)
T COG3055 164 FEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN-----P------------FYGNAGSAVVI 226 (381)
T ss_pred HHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC-----c------------ccCccCcceee
Confidence 0 001134589999999999876522 1 23567666666
Q ss_pred ECCEEEEEcCC-CCCCCcCcEEEEe
Q 005755 130 IGVRIYIYGGL-KGDILLDDFLVAE 153 (679)
Q Consensus 130 ~~g~IYV~GG~-~~~~~l~dl~~~D 153 (679)
-++++.++=|. ..+.....++.++
T Consensus 227 ~~n~~~lInGEiKpGLRt~~~k~~~ 251 (381)
T COG3055 227 KGNKLTLINGEIKPGLRTAEVKQAD 251 (381)
T ss_pred cCCeEEEEcceecCCccccceeEEE
Confidence 67766666654 3444455566655
No 98
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.20 E-value=0.00076 Score=69.51 Aligned_cols=68 Identities=25% Similarity=0.190 Sum_probs=45.5
Q ss_pred CeEEEccCCCCH-----H-HHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCc
Q 005755 376 PVKVFGDLHGQF-----G-DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 449 (679)
Q Consensus 376 pi~ViGDIHG~~-----~-dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNH 449 (679)
.|.+++|+|+++ . .|.++++...-...+ -+|+.||++++.+...+++..|..+ .+..++++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 378999999764 1 244555544322222 6889999999876555555544442 345799999999
Q ss_pred ccc
Q 005755 450 EAA 452 (679)
Q Consensus 450 E~~ 452 (679)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 964
No 99
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.17 E-value=0.025 Score=58.85 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=34.2
Q ss_pred hhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEE-EEEEcCCc
Q 005755 561 PDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA-ILVVGRGL 621 (679)
Q Consensus 561 ~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga-~l~i~~~~ 621 (679)
...+.+.|++.++++++-||.-....... ++--.-+-.++.++-..++.|. ++.++++.
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 254 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGRY--GGLEMVVTSAIGAQLGNDKSGLRIVKVTEDK 254 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceEE--CCEEEEEcCceecccCCCCCCcEEEEECCCc
Confidence 35677788999999999999987665432 3321112233333333334443 66665543
No 100
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.11 E-value=0.0019 Score=62.99 Aligned_cols=40 Identities=33% Similarity=0.492 Sum_probs=29.6
Q ss_pred eEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchh
Q 005755 410 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 454 (679)
Q Consensus 410 ~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~ 454 (679)
.+|++||+++++..... +.+|.+ .+..+++++||||....
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~----~~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSR----LNGRKHLIKGNHDSSLE 84 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHh----CCCCeEEEeCCCCchhh
Confidence 79999999999986543 333333 34579999999997543
No 101
>smart00612 Kelch Kelch domain.
Probab=97.10 E-value=0.0008 Score=50.26 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=35.8
Q ss_pred EEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECC
Q 005755 12 MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGA 63 (679)
Q Consensus 12 ~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~ 63 (679)
+|||+||... ...+++ ...+++.+++|+.+. ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~-~~~~~~-v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG-GQRLKS-VEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC-Cceeee-EEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999875 234444 457899999997554 7899999999988764
No 102
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=97.04 E-value=0.0014 Score=65.89 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=45.8
Q ss_pred CeEEEccCC-CCH--------------HHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhc--
Q 005755 376 PVKVFGDLH-GQF--------------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEY-- 438 (679)
Q Consensus 376 pi~ViGDIH-G~~--------------~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~-- 438 (679)
.++.++|+| |.. ..|.++++.......+ .+|+.||++|....+.+.+..+...-.+.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 378899999 322 2345555544322222 68999999998876655444443332222
Q ss_pred -CCCeEEecCCcccchh
Q 005755 439 -PENVHLIRGNHEAADI 454 (679)
Q Consensus 439 -P~~v~lLrGNHE~~~~ 454 (679)
.-.++++.||||....
T Consensus 75 ~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 75 AGIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCCEEEecCCCCCccc
Confidence 4569999999997554
No 103
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.03 E-value=0.0039 Score=64.72 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=68.3
Q ss_pred EEEEEcccCCCCCCccceEEEEeCCCC--c-----EEEEeCCCCCCCCCcceEEEEEC---C-EEEEEecccCC---C--
Q 005755 12 MFLLCGGRDASGAPLADAYGLLMHRNG--Q-----WEWTLAPGVAPSPRYQHAAVFVG---A-RLHVTGGALRG---G-- 75 (679)
Q Consensus 12 ~l~vfGG~~~~~~~l~d~~~l~~~~~~--~-----W~wv~~~g~~P~pR~~Hsaavvg---~-~LyV~GG~~~~---~-- 75 (679)
..+|.||++.........|-+.....+ + ...-+.-|+.|.+||+|++-++. . -.++|||+..- .
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 456789998654433334433222222 1 11122238999999999988873 2 36779998621 1
Q ss_pred -----CcccCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCC
Q 005755 76 -----RAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK 141 (679)
Q Consensus 76 -----~~~~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~ 141 (679)
.+++-.-.|+..|++-+.++...-. .- . ..-..|.+.+-++.||+.||..
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lp--El-~-------------dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLP--EL-Q-------------DGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccch--hh-c-------------CCeEEEEEEecCceEEEEccEE
Confidence 1122234578888888876554311 00 1 1233498999999999999964
No 104
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=97.00 E-value=0.0003 Score=77.33 Aligned_cols=94 Identities=17% Similarity=0.099 Sum_probs=73.1
Q ss_pred CCCCCCcceEEEEECC--EEEEEecccCCCCcccCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccce
Q 005755 48 VAPSPRYQHAAVFVGA--RLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRH 125 (679)
Q Consensus 48 ~~P~pR~~Hsaavvg~--~LyV~GG~~~~~~~~~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~H 125 (679)
.-|..|.+|.++...+ .+|++||+++ +.+.+++|.|....+.|+.++ ..+.-|. .|.+|
T Consensus 256 ~~p~~RgGHQMV~~~~~~CiYLYGGWdG----~~~l~DFW~Y~v~e~~W~~iN--~~t~~PG-------------~RsCH 316 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQTECVYLYGGWDG----TQDLADFWAYSVKENQWTCIN--RDTEGPG-------------ARSCH 316 (723)
T ss_pred cCccccCcceEEEeCCCcEEEEecCccc----chhHHHHHhhcCCcceeEEee--cCCCCCc-------------chhhh
Confidence 4588999999998765 9999999977 344566999999999999988 3343332 57779
Q ss_pred EEEEECC--EEEEEcCCCCC------CCcCcEEEEeCCCCccc
Q 005755 126 ASASIGV--RIYIYGGLKGD------ILLDDFLVAENSPFQSD 160 (679)
Q Consensus 126 aa~~~~g--~IYV~GG~~~~------~~l~dl~~~D~~~~~~~ 160 (679)
.++.--. ++|+.|-+-+. ...+|+|+||.++-.|+
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~ 359 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWM 359 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeE
Confidence 9998765 99999986432 45799999998775543
No 105
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.96 E-value=0.0032 Score=72.07 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=60.0
Q ss_pred CCeEEEccCC-CCH----HHHHHHHHHhC-CCCC----CCCCceeeEEEeccccCC-CCCc---------------HHHH
Q 005755 375 APVKVFGDLH-GQF----GDLMRLFDEYG-FPST----AGDITYIDYLFLGDYVDR-GQHS---------------LETI 428 (679)
Q Consensus 375 ~pi~ViGDIH-G~~----~dL~~l~~~~g-~~~~----~~~~~~~~~vFLGDyVDR-G~~s---------------levl 428 (679)
..+++++||| |.- ..+..+++.+. ..+. ..++ ..+|++||+||. |.+. -++.
T Consensus 244 ~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~--d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~ 321 (504)
T PRK04036 244 VYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRV--KYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAA 321 (504)
T ss_pred cEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcC--CEEEEeCcccccccCCccchhhccchhhHHHHHHHH
Confidence 4689999999 653 22344444332 2111 0011 278999999994 3211 1344
Q ss_pred HHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHH-hCCCccchhhhhhhhhhccCCceEEEcC-cEEEecCCc
Q 005755 429 TLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIER-MGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGI 504 (679)
Q Consensus 429 ~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~-~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~ilcvHgGi 504 (679)
.+|..+. ..-.|++++||||.........-..+++.. +... -..++.. |....+++ +++++||-.
T Consensus 322 ~~L~~L~--~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~--------~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 322 EYLKQIP--EDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEH--------NVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHHHhhh--cCCeEEEecCCCcchhhccCCCCccHHHHHhcCcC--------CeEEecC-CeEEEECCEEEEEECCCC
Confidence 4444443 234699999999976533222211222222 2110 1122333 55444444 788999864
No 106
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.95 E-value=0.0023 Score=67.15 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=46.9
Q ss_pred CeEEEccCC-CC------------HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC-cHHHHHHHHHHHHhcCCC
Q 005755 376 PVKVFGDLH-GQ------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-SLETITLLLALKIEYPEN 441 (679)
Q Consensus 376 pi~ViGDIH-G~------------~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~-slevl~lL~~lk~~~P~~ 441 (679)
.+.+++|+| +. ...|.++++.+.....+ -+|++||+++.|.. +.+-+..++++-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 478999999 22 35566666665322222 68889999998873 223344333333333457
Q ss_pred eEEecCCcccchh
Q 005755 442 VHLIRGNHEAADI 454 (679)
Q Consensus 442 v~lLrGNHE~~~~ 454 (679)
++.+.||||....
T Consensus 76 ~~~v~GNHD~~~~ 88 (267)
T cd07396 76 VHHVLGNHDLYNP 88 (267)
T ss_pred EEEecCccccccc
Confidence 9999999998543
No 107
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.91 E-value=0.0019 Score=67.83 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=44.2
Q ss_pred eEEEccCCCCHHHHHHHHHHhCC---CCCCCCCceeeEEEeccccCCCC-CcHHHHH------HHH---HH---HHhcCC
Q 005755 377 VKVFGDLHGQFGDLMRLFDEYGF---PSTAGDITYIDYLFLGDYVDRGQ-HSLETIT------LLL---AL---KIEYPE 440 (679)
Q Consensus 377 i~ViGDIHG~~~dL~~l~~~~g~---~~~~~~~~~~~~vFLGDyVDRG~-~slevl~------lL~---~l---k~~~P~ 440 (679)
|+|+||+||++..+.+.++.... .+.+ -+|++||+-..+. ..++.+. -+. ++ ..+.|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 68999999999888775544321 1222 6888999965433 3344332 111 11 223566
Q ss_pred CeEEecCCcccc
Q 005755 441 NVHLIRGNHEAA 452 (679)
Q Consensus 441 ~v~lLrGNHE~~ 452 (679)
-+++|-||||..
T Consensus 75 ~t~fi~GNHE~~ 86 (262)
T cd00844 75 LTIFIGGNHEAS 86 (262)
T ss_pred eEEEECCCCCCH
Confidence 689999999974
No 108
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.90 E-value=0.0023 Score=64.34 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=22.3
Q ss_pred eChhHHHHHHHHcCCeEEEecccccccce
Q 005755 559 FGPDRVSDFCKRNKLQLIIRAHECVMDGF 587 (679)
Q Consensus 559 fg~~~~~~fl~~n~l~~IiRgHe~v~~G~ 587 (679)
..+..+.+.++..+.+++|-||.-...-.
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~~ 204 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPALH 204 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCeE
Confidence 45566777888999999999998765433
No 109
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=96.84 E-value=0.0034 Score=61.40 Aligned_cols=44 Identities=25% Similarity=0.244 Sum_probs=27.5
Q ss_pred eEEEeccccCCCCCc--HHHHHHHHHHHHhcCCCeEEecCCcccch
Q 005755 410 DYLFLGDYVDRGQHS--LETITLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 410 ~~vFLGDyVDRG~~s--levl~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
.+|++||++|..... .+...+-+......+-.+++++||||...
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccch
Confidence 799999999865432 22222111112234557999999999743
No 110
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.00021 Score=76.71 Aligned_cols=211 Identities=9% Similarity=-0.117 Sum_probs=140.7
Q ss_pred eeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhhccC
Q 005755 408 YIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCL 487 (679)
Q Consensus 408 ~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~L 487 (679)
+...|+|+++++++.+.++.+-+.+..++.|-.+...+++||+ ..++++++........+...+|+..++.+..+
T Consensus 48 ~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~-----~~~~~R~~LVlp~l~S~riyvid~~~ep~~~~ 122 (476)
T KOG0918|consen 48 YLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHG-----DSSFKRRYLVLPSLNSGRIYVIDVKTEPRKPS 122 (476)
T ss_pred ceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhcc-----CcchhhhheeecccccCceEEEEeccCcCccc
Confidence 4478999999999999999999999999998888899999994 35666777666666667788899999999999
Q ss_pred CceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcceeeecccCCCCCCCc--cCCCCCCCCCCCceeeChh--H
Q 005755 488 PLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS--IEGLRPNARGPGLVTFGPD--R 563 (679)
Q Consensus 488 Plaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~--~~g~~~n~Rg~g~~~fg~~--~ 563 (679)
+..++.. +|+|.||+..|+..+...+.++.-..--+..+ ..+. |-++.+.+. ...|. .++.. ..||-| .
T Consensus 123 l~k~i~~-~il~~~~l~~Pht~hcla~g~v~vs~lGd~~g--n~kg-~f~llD~~~~~k~tw~--~~~~~-p~~gyDfwy 195 (476)
T KOG0918|consen 123 LEKTIDP-DILEKTGLACPHTSHCLASGNVMVSCLGDAEG--NAKG-GFLLLDSDFNEKGTWE--KPGHS-PLFGYDFWY 195 (476)
T ss_pred eeeeech-hhHhhcCCcCCcccccccCCCeeEEeeccccc--CCcC-CeEEecCccceecccc--cCCCc-cccccceee
Confidence 9998876 89999999999977666655332111001110 1111 333322110 11121 11111 222322 2
Q ss_pred HHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcCC--ceEEeEEecCCC
Q 005755 564 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRG--LVVVPKLIHPLP 632 (679)
Q Consensus 564 ~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~~--~~~~~~~~~~~~ 632 (679)
.-.++...+.+.+.+.|.-...++..+.++ ++.++..-|.-...+.++.+.++.+ +....+.+|...
T Consensus 196 qpr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p~ 264 (476)
T KOG0918|consen 196 QPRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNPS 264 (476)
T ss_pred ccccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCCCcceEEeeeccCCC
Confidence 334555666777788887543344445565 8899999998888899999999875 334555565533
No 111
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.73 E-value=0.0033 Score=68.43 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=44.4
Q ss_pred CeEEEccCC-C-----------CHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCC-CCcHHHHHHHHH--H--HHhc
Q 005755 376 PVKVFGDLH-G-----------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLA--L--KIEY 438 (679)
Q Consensus 376 pi~ViGDIH-G-----------~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG-~~slevl~lL~~--l--k~~~ 438 (679)
+++.++|+| | +...|.++++...-...+ .+|+.||++|+. +.+.+++.++.. + -...
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~ 75 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEA 75 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 478899999 4 223444554444222222 688999999985 455555544433 2 1233
Q ss_pred CCCeEEecCCcccc
Q 005755 439 PENVHLIRGNHEAA 452 (679)
Q Consensus 439 P~~v~lLrGNHE~~ 452 (679)
+-.|++|.||||..
T Consensus 76 gi~v~~I~GNHD~~ 89 (340)
T PHA02546 76 GITLHVLVGNHDMY 89 (340)
T ss_pred CCeEEEEccCCCcc
Confidence 45799999999974
No 112
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.66 E-value=0.0059 Score=62.39 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=43.6
Q ss_pred CeEEEccCCCC------------HHHHHHHHHHhCCC--CCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCC
Q 005755 376 PVKVFGDLHGQ------------FGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPEN 441 (679)
Q Consensus 376 pi~ViGDIHG~------------~~dL~~l~~~~g~~--~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~ 441 (679)
++.+++|||=. ...|.++++.+.-. ..+ -+|++||+++.|.. +....+..+..+.+-.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSP--ESYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCH--HHHHHHHHHHhhcCCC
Confidence 37899999944 34566666654332 222 68899999998753 2222222222233567
Q ss_pred eEEecCCcccc
Q 005755 442 VHLIRGNHEAA 452 (679)
Q Consensus 442 v~lLrGNHE~~ 452 (679)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 89999999974
No 113
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.61 E-value=0.085 Score=54.96 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=49.7
Q ss_pred CeEEEccCCCC------HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHH--HHhcCCCeEEecC
Q 005755 376 PVKVFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLAL--KIEYPENVHLIRG 447 (679)
Q Consensus 376 pi~ViGDIHG~------~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~l--k~~~P~~v~lLrG 447 (679)
.+..|+|+|-- ...+..+++.+.....+ -+|+.||+.+.|. .+-+..+..+ +...|..+++++|
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~vpG 73 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGE--PEEYRRLKELLARLELPAPVIVVPG 73 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCC--HHHHHHHHHHHhhccCCCceEeeCC
Confidence 47789999977 34555666766644334 7999999999963 2222333222 2367788999999
Q ss_pred Ccccchhhh
Q 005755 448 NHEAADINA 456 (679)
Q Consensus 448 NHE~~~~~~ 456 (679)
|||....+.
T Consensus 74 NHD~~~~~~ 82 (301)
T COG1409 74 NHDARVVNG 82 (301)
T ss_pred CCcCCchHH
Confidence 999876553
No 114
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.46 E-value=0.0064 Score=63.46 Aligned_cols=71 Identities=23% Similarity=0.228 Sum_probs=44.7
Q ss_pred CeEEEccCCC-C-----------HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHH----HHHHHHHHhcC
Q 005755 376 PVKVFGDLHG-Q-----------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 439 (679)
Q Consensus 376 pi~ViGDIHG-~-----------~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl----~lL~~lk~~~P 439 (679)
.++.++|+|- . +..|.++++.+.-...+ .+|+.||++|+...+.+.. .+|..|+...|
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~ 75 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDANP 75 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4788999993 2 22344444443222222 6889999999987665543 33444443333
Q ss_pred CCeEEecCCcccc
Q 005755 440 ENVHLIRGNHEAA 452 (679)
Q Consensus 440 ~~v~lLrGNHE~~ 452 (679)
-.++++.||||..
T Consensus 76 i~v~~i~GNHD~~ 88 (253)
T TIGR00619 76 IPIVVISGNHDSA 88 (253)
T ss_pred ceEEEEccCCCCh
Confidence 5799999999974
No 115
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.45 E-value=0.0044 Score=59.88 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=27.8
Q ss_pred eEEEeccccCCCCCc-HHHH-HHHHHHHHh---c-CCCeEEecCCcccch
Q 005755 410 DYLFLGDYVDRGQHS-LETI-TLLLALKIE---Y-PENVHLIRGNHEAAD 453 (679)
Q Consensus 410 ~~vFLGDyVDRG~~s-levl-~lL~~lk~~---~-P~~v~lLrGNHE~~~ 453 (679)
.+||+||++|.+... -+.. .++..++.. . +..++++.||||...
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 799999999987642 1221 222222222 2 346999999999743
No 116
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.40 E-value=0.0089 Score=66.68 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=30.1
Q ss_pred eEEEeccccCCCCCcHHHH----HHHHHHHHhcCCCeEEecCCcccch
Q 005755 410 DYLFLGDYVDRGQHSLETI----TLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 410 ~~vFLGDyVDRG~~slevl----~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
.+|+.||++|++..+.+.. .++..|+. .+-.|+++.||||...
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVVLAGNHDSVA 88 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEcCCCCChh
Confidence 6889999999986654433 23344442 2356999999999753
No 117
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.33 E-value=0.012 Score=60.44 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=26.8
Q ss_pred eEEEeccccCCCCCc---HHHHHHHHHHHHhcCCCeEEecCCcccch
Q 005755 410 DYLFLGDYVDRGQHS---LETITLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 410 ~~vFLGDyVDRG~~s---levl~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
.+|++||+++..... -++..+|..+ ...+++++||||...
T Consensus 61 ~vIi~GDl~h~~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 61 ALIINGDLKHEFKKGLEWRFIREFIEVT----FRDLILIRGNHDALI 103 (225)
T ss_pred EEEEcCccccccCChHHHHHHHHHHHhc----CCcEEEECCCCCCcc
Confidence 799999999765543 2222333332 247999999999743
No 118
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.32 E-value=0.011 Score=62.19 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=45.0
Q ss_pred CeEEEccCC-C-----------CHHHHHHHHHHhCCC--CCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCC
Q 005755 376 PVKVFGDLH-G-----------QFGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPEN 441 (679)
Q Consensus 376 pi~ViGDIH-G-----------~~~dL~~l~~~~g~~--~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~ 441 (679)
.++.|+|+| . ....|.++++.+... ..+ -+|+.||++|.|. .+-+..++..-.+.+..
T Consensus 16 ~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D------~vvitGDl~~~~~--~~~~~~~~~~l~~l~~P 87 (275)
T PRK11148 16 RILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD------LIVATGDLAQDHS--SEAYQHFAEGIAPLRKP 87 (275)
T ss_pred EEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC------EEEECCCCCCCCC--HHHHHHHHHHHhhcCCc
Confidence 488999999 1 245577777665321 122 5888999999874 33333333333344567
Q ss_pred eEEecCCcccc
Q 005755 442 VHLIRGNHEAA 452 (679)
Q Consensus 442 v~lLrGNHE~~ 452 (679)
++++.||||..
T Consensus 88 v~~v~GNHD~~ 98 (275)
T PRK11148 88 CVWLPGNHDFQ 98 (275)
T ss_pred EEEeCCCCCCh
Confidence 99999999973
No 119
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.30 E-value=0.027 Score=58.24 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=26.2
Q ss_pred eEEEeccccCCCCC------------cHH----HHHHHHHHHHhcCCCeEEecCCcccch
Q 005755 410 DYLFLGDYVDRGQH------------SLE----TITLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 410 ~~vFLGDyVDRG~~------------sle----vl~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
.+|++||++|+... ..+ +..+|..|. ..-.|+++.||||...
T Consensus 38 ~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 38 YLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP--SHIKIIIIPGNHDAVR 95 (243)
T ss_pred EEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--cCCeEEEeCCCCCccc
Confidence 78899999997310 111 222333332 2356999999999753
No 120
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=96.22 E-value=0.028 Score=59.37 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHcCCeEEEecccccccceEEecCCeEE
Q 005755 560 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLI 596 (679)
Q Consensus 560 g~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~li 596 (679)
....+.+.++++++++++-||.-..+-+....+++++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~ 217 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV 217 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec
Confidence 3456778899999999999999764433334455544
No 121
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=96.19 E-value=0.012 Score=60.55 Aligned_cols=46 Identities=9% Similarity=-0.001 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHcCCeEEEecccccccceE---EecCCeEEEEeeccccCCC
Q 005755 560 GPDRVSDFCKRNKLQLIIRAHECVMDGFE---RFAQGQLITLFSATNYCGT 607 (679)
Q Consensus 560 g~~~~~~fl~~n~l~~IiRgHe~v~~G~~---~~~~~~liTvFSa~~Y~~~ 607 (679)
+...+.+.+++.++++++-||.-...-.. ...+| |+.+++|.=|-.
T Consensus 181 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~~~ 229 (232)
T cd07393 181 DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADYLN 229 (232)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchhcC
Confidence 45677888899999999999986533222 11233 567777765543
No 122
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=96.17 E-value=0.017 Score=57.62 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=30.2
Q ss_pred eEEEeccccCCCCCc---HHHHHHHHHHHHhcCCCeEEecCCcc
Q 005755 410 DYLFLGDYVDRGQHS---LETITLLLALKIEYPENVHLIRGNHE 450 (679)
Q Consensus 410 ~~vFLGDyVDRG~~s---levl~lL~~lk~~~P~~v~lLrGNHE 450 (679)
.+|++||+++.+... .+.+..++.......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 689999999977653 55565555543444557899999999
No 123
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=95.92 E-value=0.15 Score=53.38 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.4
Q ss_pred CCCCCCCCC--ce-eeChhHHHHHHHHcCCeEEEecccc
Q 005755 547 LRPNARGPG--LV-TFGPDRVSDFCKRNKLQLIIRAHEC 582 (679)
Q Consensus 547 ~~~n~Rg~g--~~-~fg~~~~~~fl~~n~l~~IiRgHe~ 582 (679)
+.+.+++.| +- .-.++..++.|++.+-.+|.-||+-
T Consensus 188 ~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH 226 (257)
T cd08163 188 KTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDH 226 (257)
T ss_pred CCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCC
Confidence 344444444 11 3478899999999999999999974
No 124
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=95.80 E-value=1.2 Score=45.39 Aligned_cols=203 Identities=18% Similarity=0.199 Sum_probs=116.9
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEecccc--CCCCCcHHHHH-HHHHHHHhcCCCeEEecCCcccc
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV--DRGQHSLETIT-LLLALKIEYPENVHLIRGNHEAA 452 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyV--DRG~~slevl~-lL~~lk~~~P~~v~lLrGNHE~~ 452 (679)
.+..+.|+||.+..|.++++.......+ -+|+.||+. +.|+.-.-... .+..++ .+.-.|+.++||-|..
T Consensus 5 kil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~~~~~~~~~e~l~-~~~~~v~avpGNcD~~ 77 (226)
T COG2129 5 KILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKEVAEELNKLEALK-ELGIPVLAVPGNCDPP 77 (226)
T ss_pred eEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchHHHHhhhHHHHHH-hcCCeEEEEcCCCChH
Confidence 5789999999999999998887643333 678899999 87764322221 134444 2346899999998876
Q ss_pred hhhhhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEEEcCcEEEecCCcCCCCC------CHHHhhhccCC-cccCC
Q 005755 453 DINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIH------SVEQIEKLERP-ITMDA 525 (679)
Q Consensus 453 ~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~ilcvHgGi~p~l~------~l~~I~~i~Rp-~~~~~ 525 (679)
.+-.. ....+ ..+.. -..-+++-.||-=||..|.-. +-++|....+- +....
T Consensus 78 ~v~~~-------l~~~~----~~v~~----------~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~ 136 (226)
T COG2129 78 EVIDV-------LKNAG----VNVHG----------RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKAD 136 (226)
T ss_pred HHHHH-------HHhcc----ccccc----------ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhccc
Confidence 54322 11121 11111 112344545555677776421 34555543221 11111
Q ss_pred CcceeeecccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccC
Q 005755 526 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 605 (679)
Q Consensus 526 ~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~Y~ 605 (679)
+ ...=++.--|-.+...+ ++-| ...-|..++.+++++.+-.+.|-||=-...|++.- + =||+-.|.-.
T Consensus 137 ~--~~~Il~~HaPP~gt~~d----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~i-G---~TivVNPG~~ 204 (226)
T COG2129 137 N--PVNILLTHAPPYGTLLD----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKI-G---NTIVVNPGPL 204 (226)
T ss_pred C--cceEEEecCCCCCcccc----CCCC--ccccchHHHHHHHHHhCCceEEEeeeccccccccc-C---CeEEECCCCc
Confidence 1 00011222332222222 2333 23458999999999999999999986666777642 1 2666666543
Q ss_pred CCCCCeEEEEEEcCC
Q 005755 606 GTANNAGAILVVGRG 620 (679)
Q Consensus 606 ~~~~N~ga~l~i~~~ 620 (679)
+ .-..|++.++++
T Consensus 205 ~--~g~yA~i~l~~~ 217 (226)
T COG2129 205 G--EGRYALIELEKE 217 (226)
T ss_pred c--CceEEEEEecCc
Confidence 2 235688888777
No 125
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.76 E-value=0.029 Score=62.45 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=52.4
Q ss_pred CeEEEccCCCC------------HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHh------
Q 005755 376 PVKVFGDLHGQ------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIE------ 437 (679)
Q Consensus 376 pi~ViGDIHG~------------~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~------ 437 (679)
.|.+++|+|-- +..|.++++.+.-...+ -+|+.||++|+..-|.+++..++.+-.+
T Consensus 5 KIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~ 78 (405)
T TIGR00583 5 RILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDK 78 (405)
T ss_pred EEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccCC
Confidence 58899999942 45667777766433323 6888999999999999988776554332
Q ss_pred ------------------------------cCCCeEEecCCcccch
Q 005755 438 ------------------------------YPENVHLIRGNHEAAD 453 (679)
Q Consensus 438 ------------------------------~P~~v~lLrGNHE~~~ 453 (679)
..-.||.|-||||...
T Consensus 79 p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 79 PCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1236999999999864
No 126
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.49 E-value=0.03 Score=58.48 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.3
Q ss_pred HHHHHHHcCCeEEEecccccccceEEe
Q 005755 564 VSDFCKRNKLQLIIRAHECVMDGFERF 590 (679)
Q Consensus 564 ~~~fl~~n~l~~IiRgHe~v~~G~~~~ 590 (679)
+.+.+++.++++++-||.-...+.+..
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceee
Confidence 778899999999999999887774543
No 127
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=95.10 E-value=0.064 Score=53.70 Aligned_cols=65 Identities=20% Similarity=0.129 Sum_probs=39.7
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCc-HHHHHHHHHHHHhc---------------------C
Q 005755 382 DLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEY---------------------P 439 (679)
Q Consensus 382 DIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-levl~lL~~lk~~~---------------------P 439 (679)
|++|+=.=|.++++..-..-.- ..++||||++|.|--+ -|--.....++..+ .
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~P-----d~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKP-----DAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGK 98 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCC-----CEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCC
Confidence 4456655667777665332111 1688999999987532 33334444554433 1
Q ss_pred CCeEEecCCccc
Q 005755 440 ENVHLIRGNHEA 451 (679)
Q Consensus 440 ~~v~lLrGNHE~ 451 (679)
-.+++|.||||.
T Consensus 99 i~~i~V~GNHDI 110 (193)
T cd08164 99 TPLINIAGNHDV 110 (193)
T ss_pred ceEEEECCcccC
Confidence 356889999998
No 128
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.09 E-value=0.096 Score=53.69 Aligned_cols=196 Identities=22% Similarity=0.258 Sum_probs=102.2
Q ss_pred EEccCCCC------HHHHHHHHHHhCCCCCCCCCceeeEEEeccccC--CCCC-----cHHHHHHHHHHHHhcCCCeEEe
Q 005755 379 VFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVD--RGQH-----SLETITLLLALKIEYPENVHLI 445 (679)
Q Consensus 379 ViGDIHG~------~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVD--RG~~-----slevl~lL~~lk~~~P~~v~lL 445 (679)
.|+|+|=. -+-|+++++.... ..+ .+.+|||++| .|.. --+|...|..+ .....++|.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~-a~~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL-ARKGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHH-HhcCCeEEEe
Confidence 68898844 2344555555322 222 7889999998 3332 23444444444 3456789999
Q ss_pred cCCcccchhhhhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEEE---cCcEEEecCCcCCCCCC------------
Q 005755 446 RGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI---EKKIICMHGGIGRSIHS------------ 510 (679)
Q Consensus 446 rGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i---~~~ilcvHgGi~p~l~~------------ 510 (679)
.||||. .+...+ ....| .+.-+|-..++ +.+++++||-.-.....
T Consensus 74 ~GN~Df-ll~~~f------~~~~g-------------~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~ 133 (237)
T COG2908 74 HGNHDF-LLGKRF------AQEAG-------------GMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWA 133 (237)
T ss_pred cCchHH-HHHHHH------HhhcC-------------ceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccH
Confidence 999994 332221 11121 12234444333 57999999965432110
Q ss_pred HHHhhhccCCcccCCCcceeeecccCCCCCCCccCCCCCCCCCCC--ceeeChhHHHHHHHHcCCeEEEecccccccceE
Q 005755 511 VEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG--LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 588 (679)
Q Consensus 511 l~~I~~i~Rp~~~~~~~~~~~dlLWsDP~~~~~~~g~~~n~Rg~g--~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~ 588 (679)
..+..-+.+|+.... .+..=+|+.- .|.+...... +....+..+.+-+++++++.+|-||.-.+..-.
T Consensus 134 ~~~~lflnl~l~~R~---ri~~k~r~~s-------~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 134 WLQLLFLNLPLRVRR---RIAYKIRSLS-------SWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHHHHhHHHHHH---HHHHHHHHhh-------HHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc
Confidence 111111122222000 0111144443 1222111111 123467788888999999999999987655444
Q ss_pred EecCCeEEEEeeccccC--CCCCCeEEEEEEcCCce
Q 005755 589 RFAQGQLITLFSATNYC--GTANNAGAILVVGRGLV 622 (679)
Q Consensus 589 ~~~~~~liTvFSa~~Y~--~~~~N~ga~l~i~~~~~ 622 (679)
.. + ..|| |.-...++++.++.+..
T Consensus 204 i~--~--------~~yi~lGdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 204 IP--G--------ITYINLGDWVSEGSILEVDDGGL 229 (237)
T ss_pred CC--C--------ceEEecCcchhcceEEEEecCcE
Confidence 32 1 2232 33335678998887753
No 129
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=95.02 E-value=0.053 Score=53.17 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=28.5
Q ss_pred eEEEeccccCCCCCc--HHHHHHHHHHHHhc--------CCCeEEecCCcccch
Q 005755 410 DYLFLGDYVDRGQHS--LETITLLLALKIEY--------PENVHLIRGNHEAAD 453 (679)
Q Consensus 410 ~~vFLGDyVDRG~~s--levl~lL~~lk~~~--------P~~v~lLrGNHE~~~ 453 (679)
.+||+||++|.+... .+...++..++..+ ...+++|.||||...
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 799999999988743 22222332222221 356999999999853
No 130
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.81 E-value=0.064 Score=51.63 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=48.6
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcc
Q 005755 378 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 450 (679)
Q Consensus 378 ~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE 450 (679)
.|+||+||+++.+..-++.+.-. .+. +.-+|++||+..-.... +-+.-++.=+.+.|--.|++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k--~gp--Fd~~ic~Gdff~~~~~~-~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKK--KGP--FDALLCVGDFFGDDEDD-EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcc--cCC--eeEEEEecCccCCccch-hhHHHHhcCCccCCCCEEEECCCCC
Confidence 48999999999998888775321 222 22678899999866555 3344444445578888999999998
No 131
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=94.70 E-value=0.039 Score=55.35 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=31.8
Q ss_pred eEEEeccccCCCCCc--HHHHHHHHHHHHhcC----CCeEEecCCccc
Q 005755 410 DYLFLGDYVDRGQHS--LETITLLLALKIEYP----ENVHLIRGNHEA 451 (679)
Q Consensus 410 ~~vFLGDyVDRG~~s--levl~lL~~lk~~~P----~~v~lLrGNHE~ 451 (679)
-+|||||++|.|+.+ .|.+..+..++..++ -.++.|.||||-
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDI 92 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDI 92 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCc
Confidence 689999999999853 346666666664433 468899999996
No 132
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=94.46 E-value=0.089 Score=55.92 Aligned_cols=71 Identities=24% Similarity=0.239 Sum_probs=45.8
Q ss_pred CCeEEEccCCCCHHH--HHHHHHHhCCCCCCCCCceeeEEEeccccCC-CCCc-HHHHHHHHHHHHhcCCCeEEecCCcc
Q 005755 375 APVKVFGDLHGQFGD--LMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-GQHS-LETITLLLALKIEYPENVHLIRGNHE 450 (679)
Q Consensus 375 ~pi~ViGDIHG~~~d--L~~l~~~~g~~~~~~~~~~~~~vFLGDyVDR-G~~s-levl~lL~~lk~~~P~~v~lLrGNHE 450 (679)
.+|+-++|+|-.... ..+.+........+ -+++.|||+|+ .+.. -.++..|..|+ .|-.+|.+.||||
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~--~~~gv~av~GNHd 116 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLK--APLGVFAVLGNHD 116 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhh--ccCCEEEEecccc
Confidence 359999999987655 22223222221112 68999999996 5544 44555555554 4568999999997
Q ss_pred cch
Q 005755 451 AAD 453 (679)
Q Consensus 451 ~~~ 453 (679)
...
T Consensus 117 ~~~ 119 (284)
T COG1408 117 YGV 119 (284)
T ss_pred ccc
Confidence 643
No 133
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.34 E-value=0.13 Score=53.34 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=57.3
Q ss_pred eeeeeEEeCCEEEEEcccCCCCCCccceEEEEeCC---CCcEEE--EeCC-CCCCCCCcceEEEEECCEEEEEecccCCC
Q 005755 2 YATASARSDGMFLLCGGRDASGAPLADAYGLLMHR---NGQWEW--TLAP-GVAPSPRYQHAAVFVGARLHVTGGALRGG 75 (679)
Q Consensus 2 yhsA~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~---~~~W~w--v~~~-g~~P~pR~~Hsaavvg~~LyV~GG~~~~~ 75 (679)
|.|+....||+++|.||+... .+.++..+ ...+.+ +... ...+..-|=+..+.-+++||+++.+.
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--- 190 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--- 190 (243)
T ss_pred cccceECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC---
Confidence 788889999999999999832 23333321 112222 2211 13455666677777899999998761
Q ss_pred CcccCCCeEEEEECCCCcE-EecccCcCCCC
Q 005755 76 RAIEGEAAVAVLDTAAGVW-LDRNGLVTSSR 105 (679)
Q Consensus 76 ~~~~~~~~v~vyD~~t~~W-~~i~~~~~~~~ 105 (679)
-.+||..++++ .+++.+..+++
T Consensus 191 --------s~i~d~~~n~v~~~lP~lPg~~R 213 (243)
T PF07250_consen 191 --------SIIYDYKTNTVVRTLPDLPGGPR 213 (243)
T ss_pred --------cEEEeCCCCeEEeeCCCCCCCce
Confidence 45889999987 67777644444
No 134
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.79 E-value=0.12 Score=53.28 Aligned_cols=66 Identities=32% Similarity=0.332 Sum_probs=41.2
Q ss_pred CeEEEccCCCCH---------HHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcH-----HHHHHHHHHHHhcCCC
Q 005755 376 PVKVFGDLHGQF---------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-----ETITLLLALKIEYPEN 441 (679)
Q Consensus 376 pi~ViGDIHG~~---------~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~sl-----evl~lL~~lk~~~P~~ 441 (679)
.|+.++|+||.+ ..|.++++...-...+ .-+|..||+++....+- .++..|.++. -
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g-----~ 71 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNALG-----Y 71 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhcC-----C
Confidence 478899999887 4556666665322111 14567999999887643 4444443331 2
Q ss_pred eEEecCCccc
Q 005755 442 VHLIRGNHEA 451 (679)
Q Consensus 442 v~lLrGNHE~ 451 (679)
.++..||||.
T Consensus 72 d~~~~GNHe~ 81 (252)
T cd00845 72 DAVTIGNHEF 81 (252)
T ss_pred CEEeeccccc
Confidence 3345699996
No 135
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=93.57 E-value=0.24 Score=50.95 Aligned_cols=68 Identities=26% Similarity=0.395 Sum_probs=43.5
Q ss_pred cCCeEEEccCCCCHHHHH----------------HHH----HHhCCCCCCCCCceeeEEEeccccCCCCC-----cHHHH
Q 005755 374 RAPVKVFGDLHGQFGDLM----------------RLF----DEYGFPSTAGDITYIDYLFLGDYVDRGQH-----SLETI 428 (679)
Q Consensus 374 ~~pi~ViGDIHG~~~dL~----------------~l~----~~~g~~~~~~~~~~~~~vFLGDyVDRG~~-----slevl 428 (679)
...+.|+.|+|=-|+..+ +.+ +.++ + + ++|.+||.-.-.+. ..|+.
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~--p-~------~lIilGD~KH~~~~~~~~e~~~~~ 89 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYG--P-K------RLIILGDLKHEFGKSLRQEKEEVR 89 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcC--C-C------EEEEcCccccccCccccccHHHHH
Confidence 468999999996554433 222 2221 1 1 79999999874433 34555
Q ss_pred HHHHHHHHhcCCCeEEecCCcccch
Q 005755 429 TLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 429 ~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
.++-.++.. .+.+++||||...
T Consensus 90 ~f~~~~~~~---evi~i~GNHD~~i 111 (235)
T COG1407 90 EFLELLDER---EVIIIRGNHDNGI 111 (235)
T ss_pred HHHHHhccC---cEEEEeccCCCcc
Confidence 555444433 5999999999844
No 136
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=92.32 E-value=0.54 Score=45.22 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=30.3
Q ss_pred eEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhh
Q 005755 410 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINAL 457 (679)
Q Consensus 410 ~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~ 457 (679)
.+.+|||+.-.-..--+...++.+| |++++|++||||-..-...
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~~~~ 91 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHPMYR 91 (186)
T ss_pred eEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCccccc
Confidence 6888999987555444444444443 6899999999997544333
No 137
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=91.56 E-value=1.7 Score=48.85 Aligned_cols=199 Identities=20% Similarity=0.180 Sum_probs=103.5
Q ss_pred CeEEEccCCC-CHHHH----HHHHHHhCCCCCCCCCceeeEEE-eccccCCC------------CCcHHHHHHHHHHHHh
Q 005755 376 PVKVFGDLHG-QFGDL----MRLFDEYGFPSTAGDITYIDYLF-LGDYVDRG------------QHSLETITLLLALKIE 437 (679)
Q Consensus 376 pi~ViGDIHG-~~~dL----~~l~~~~g~~~~~~~~~~~~~vF-LGDyVDRG------------~~slevl~lL~~lk~~ 437 (679)
.+.+++|+|= ...-+ .++++.++-+.. -....+|+. .||.||.. .+..|-...+..+-..
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~ 304 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ 304 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh
Confidence 4789999995 33333 333344433321 112336665 77999942 1334444555555555
Q ss_pred cCCC--eEEecCCcccchhhhhcCChHHH-HHHhCCCccchhhhhhhhhhccCCceEEEcC-cEEEecCCcCCCCCCHHH
Q 005755 438 YPEN--VHLIRGNHEAADINALFGFRLEC-IERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQ 513 (679)
Q Consensus 438 ~P~~--v~lLrGNHE~~~~~~~~gf~~e~-~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~ilcvHgGi~p~l~~l~~ 513 (679)
-|.+ |++.+||||..-.....-++.|. ...| ...+-.|=.=|.-.-+++ .+|..|| .++++
T Consensus 305 vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf---------~~~n~~~v~NP~~~~l~G~~vL~~hG------~sidD 369 (481)
T COG1311 305 VPEHIKVFIMPGNHDAVRQALPQPHFPELIKSLF---------SLNNLLFVSNPALVSLHGVDVLIYHG------RSIDD 369 (481)
T ss_pred CCCCceEEEecCCCCccccccCCCCcchhhcccc---------cccceEecCCCcEEEECCEEEEEecC------CCHHH
Confidence 5655 77899999987554333233322 2222 222212222244444443 6778887 46666
Q ss_pred hhhccCCcccCCCcc-------------eeeecccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecc
Q 005755 514 IEKLERPITMDAGSI-------------ILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAH 580 (679)
Q Consensus 514 I~~i~Rp~~~~~~~~-------------~~~dlLWsDP~~~~~~~g~~~n~Rg~g~~~fg~~~~~~fl~~n~l~~IiRgH 580 (679)
|...-...+.+.... ..-+-+|.-|...| +| ++ .---++++-||
T Consensus 370 ii~~vP~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD---------------~l---VI-----eevPDv~~~Gh 426 (481)
T COG1311 370 IIKLVPGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKD---------------YL---VI-----EEVPDVFHTGH 426 (481)
T ss_pred HHhhCCCCCccchHHHHHHHHHhcccCCCCCCccccccCCcC---------------ce---ee-----ccCCcEEEEcc
Confidence 655433322211111 11223444443211 01 11 11246788899
Q ss_pred cccccceEEecCCeEEEEeeccccCCCCCCeEEEEEEcC
Q 005755 581 ECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGR 619 (679)
Q Consensus 581 e~v~~G~~~~~~~~liTvFSa~~Y~~~~~N~ga~l~i~~ 619 (679)
+.. .|+..+.+.++|..++-+..-. .+-++.|+.
T Consensus 427 vh~-~g~~~y~gv~~vns~T~q~qTe----fqk~vni~p 460 (481)
T COG1311 427 VHK-FGTGVYEGVNLVNSGTWQEQTE----FQKMVNINP 460 (481)
T ss_pred ccc-cceeEEeccceEEeeeecchhc----cceEEEecC
Confidence 987 8999888889998888876543 234454443
No 138
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.50 E-value=0.63 Score=48.36 Aligned_cols=63 Identities=27% Similarity=0.474 Sum_probs=44.3
Q ss_pred eEEeCCEEEEEcccCCCCCCccceEEEEeCCC--CcEEEEeCCCCCCCCCcceEEEEE-CCEEEEEeccc
Q 005755 6 SARSDGMFLLCGGRDASGAPLADAYGLLMHRN--GQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGAL 72 (679)
Q Consensus 6 ~~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~--~~W~wv~~~g~~P~pR~~Hsaavv-g~~LyV~GG~~ 72 (679)
+...||.+++.||... +.. ...++.+.. ..-+|.+.+..+-.+|...++..+ +++++|+||..
T Consensus 73 ~~L~dG~ll~tGG~~~-G~~---~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDND-GNK---AIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CCCCCCCEEEeCCCCc-ccc---ceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 3567899999999864 222 233445432 233566666668899999988877 68999999986
No 139
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=90.66 E-value=0.3 Score=49.87 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=43.2
Q ss_pred CCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCc-------------------------HHHHH
Q 005755 375 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------------------LETIT 429 (679)
Q Consensus 375 ~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-------------------------levl~ 429 (679)
..|..++|.||+++-|.++.+...-...+ -+||+||++-....+ .|.|.
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 45889999999999999998765322223 699999998755433 33333
Q ss_pred HHHHHHHhcCCCeEEecCCcccch
Q 005755 430 LLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 430 lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
-++..--..+--+++|+||||...
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SH
T ss_pred HHHHHHHhcCCcEEEecCCCCchH
Confidence 444444455667999999999854
No 140
>PLN02533 probable purple acid phosphatase
Probab=90.45 E-value=0.42 Score=53.79 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=20.9
Q ss_pred hhHHHHHHHHcCCeEEEeccccccc
Q 005755 561 PDRVSDFCKRNKLQLIIRAHECVMD 585 (679)
Q Consensus 561 ~~~~~~fl~~n~l~~IiRgHe~v~~ 585 (679)
.+.++..++++++++++-||.-..+
T Consensus 311 r~~le~Ll~~~~VdlvlsGH~H~Ye 335 (427)
T PLN02533 311 KESMETLLYKARVDLVFAGHVHAYE 335 (427)
T ss_pred HHHHHHHHHHhCCcEEEecceeccc
Confidence 3578889999999999999997533
No 141
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=90.40 E-value=0.81 Score=50.70 Aligned_cols=44 Identities=27% Similarity=0.350 Sum_probs=34.5
Q ss_pred eEEEeccccCCCCCcHHHHHHHHHHHHhcC---CCeEEecCCcccch
Q 005755 410 DYLFLGDYVDRGQHSLETITLLLALKIEYP---ENVHLIRGNHEAAD 453 (679)
Q Consensus 410 ~~vFLGDyVDRG~~slevl~lL~~lk~~~P---~~v~lLrGNHE~~~ 453 (679)
-+|.-||+.|++.-|.+++.++...-.+.- -.|++|.||||...
T Consensus 43 ~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 43 FVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred EEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 588899999999999888877665433322 36999999999865
No 142
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=90.40 E-value=0.45 Score=50.09 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=15.8
Q ss_pred HHHHHHHH-cCCeEEEeccccc
Q 005755 563 RVSDFCKR-NKLQLIIRAHECV 583 (679)
Q Consensus 563 ~~~~fl~~-n~l~~IiRgHe~v 583 (679)
...++++. -++++||-||+-+
T Consensus 208 ~~~~la~~~~~vD~IlgGHsH~ 229 (277)
T cd07410 208 AAYELAEEVPGIDAILTGHQHR 229 (277)
T ss_pred HHHHHHhcCCCCcEEEeCCCcc
Confidence 34566666 6899999999865
No 143
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=89.10 E-value=1.4 Score=39.12 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=34.8
Q ss_pred CCcccccCCCchhHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeee
Q 005755 311 PTKKFTRQRSPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQL 373 (679)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~L~~~~~~il~~ep~ll~l 373 (679)
...+++...-+..+++.||+.+-+.+ .|....+..|+.++.++|+++|++++|
T Consensus 43 ~GP~l~~~~it~efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 43 DGPRLEDEPITLEFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp -SS--BTTB--HHHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 33344422234567899999977543 478889999999999999999999986
No 144
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=87.52 E-value=1.1 Score=49.61 Aligned_cols=57 Identities=32% Similarity=0.389 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC--cHHHHHHHHHHHHhcCC----CeEEecCCccc
Q 005755 390 LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH--SLETITLLLALKIEYPE----NVHLIRGNHEA 451 (679)
Q Consensus 390 L~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~--slevl~lL~~lk~~~P~----~v~lLrGNHE~ 451 (679)
|.+.|+..-+.-.-+ -++||||++|-|.. .-|--.....+|..|+. .+..+.||||-
T Consensus 81 lrr~f~~~~~~lkPd-----vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 81 LRRSFDMSQWRLKPD-----VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred HHHHHHHHHhccCCC-----EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 445565544332111 57889999998874 35556666667766664 58889999996
No 145
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=86.45 E-value=1.4 Score=45.97 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.1
Q ss_pred hhHHHHHHHHcCCeEEEecccccc
Q 005755 561 PDRVSDFCKRNKLQLIIRAHECVM 584 (679)
Q Consensus 561 ~~~~~~fl~~n~l~~IiRgHe~v~ 584 (679)
...+.++++++++++++-||.-..
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~~ 213 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHNL 213 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccc
Confidence 356788999999999999998653
No 146
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=84.73 E-value=32 Score=36.14 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=29.5
Q ss_pred eEEEecccccccceEEec--CCeEEEEeeccccCCCCCCeEEEEEEcCCceEEeEE
Q 005755 574 QLIIRAHECVMDGFERFA--QGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKL 627 (679)
Q Consensus 574 ~~IiRgHe~v~~G~~~~~--~~~liTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~ 627 (679)
..++-|||.. -|.+.+. +++-+.+.|.|.|..+ .-++|+-=+++++.+..
T Consensus 205 hVyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs~t---~~~vlvdl~tLe~~~v~ 256 (257)
T cd07387 205 HVYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFSKT---GTAVLVNLRTLECEPIS 256 (257)
T ss_pred CEEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcCcC---CEEEEEECCcCcEEEEe
Confidence 3456688875 4555443 3667788888988642 23344444567776543
No 147
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=84.72 E-value=1.3 Score=47.05 Aligned_cols=66 Identities=26% Similarity=0.345 Sum_probs=40.1
Q ss_pred CeEEEccCCCCHHH--------------HHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC-c-----HHHHHHHHHHH
Q 005755 376 PVKVFGDLHGQFGD--------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-S-----LETITLLLALK 435 (679)
Q Consensus 376 pi~ViGDIHG~~~d--------------L~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~-s-----levl~lL~~lk 435 (679)
.|+.+.|+||++.. |..+++....... ..-+|..||+++..+. + ..++.+|-++.
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~-----~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g 76 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNP-----NSLFVSAGDLIGASPFESALLQDEPTIEALNAMG 76 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCC-----CeEEEeCCcccccccchhhcccCCcHHHHHHhhC
Confidence 36789999998653 5555655432211 1256679999987654 2 24455555553
Q ss_pred HhcCCCeEEecCCccc
Q 005755 436 IEYPENVHLIRGNHEA 451 (679)
Q Consensus 436 ~~~P~~v~lLrGNHE~ 451 (679)
. . .+..||||.
T Consensus 77 ~----D-a~t~GNHef 87 (288)
T cd07412 77 V----D-ASAVGNHEF 87 (288)
T ss_pred C----e-eeeeccccc
Confidence 1 2 355699995
No 148
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.29 E-value=13 Score=39.50 Aligned_cols=121 Identities=18% Similarity=0.169 Sum_probs=65.5
Q ss_pred EEcccC-CCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEE-CCEEEEEecccCCCCcccCCCeEEEEECCCC
Q 005755 15 LCGGRD-ASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAG 92 (679)
Q Consensus 15 vfGG~~-~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavv-g~~LyV~GG~~~~~~~~~~~~~v~vyD~~t~ 92 (679)
++||.. ..+..-...+++++....+|..+- .--.. .=++..+. +++|||.|-.+..+. ....+..||..+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g---~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd~~~~ 74 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPG---NGISG-TVTDLQWASNNQLLVGGNFTLNGT---NSSNLATYDFKNQ 74 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCC---CCceE-EEEEEEEecCCEEEEEEeeEECCC---CceeEEEEecCCC
Confidence 345554 333311245778999889895432 21111 11344445 667777664433221 1345899999999
Q ss_pred cEEecccCcCCCCCCCCCCCCCCccccccccceEEEEE--C-CEEEEEcCCCCCCCcCcEEEEeCCCCcc
Q 005755 93 VWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI--G-VRIYIYGGLKGDILLDDFLVAENSPFQS 159 (679)
Q Consensus 93 ~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~--~-g~IYV~GG~~~~~~l~dl~~~D~~~~~~ 159 (679)
+|..+........|. + -.+.... + ..+|+.|... .-..-+..||-++|..
T Consensus 75 ~w~~~~~~~s~~ipg-------------p--v~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~dGs~W~~ 127 (281)
T PF12768_consen 75 TWSSLGGGSSNSIPG-------------P--VTALTFISNDGSNFWVAGRSA--NGSTFLMKYDGSSWSS 127 (281)
T ss_pred eeeecCCcccccCCC-------------c--EEEEEeeccCCceEEEeceec--CCCceEEEEcCCceEe
Confidence 998887421001110 0 0222222 2 5688888762 2223477899999875
No 149
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=83.97 E-value=2 Score=44.72 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=37.8
Q ss_pred CeEEEccCCCCHH----------HHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCc-----HHHHHHHHHHHHhcCC
Q 005755 376 PVKVFGDLHGQFG----------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPE 440 (679)
Q Consensus 376 pi~ViGDIHG~~~----------dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-----levl~lL~~lk~~~P~ 440 (679)
.|.-+.|+||++. .+..+++...-.+ ..-+|..||+++..+.+ ..++..|-.+. -
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~------~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~ 71 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLD------NDLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----Y 71 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcC------CEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----C
Confidence 3678899999854 3555555543211 12566799999976543 22333333321 2
Q ss_pred CeEEecCCccc
Q 005755 441 NVHLIRGNHEA 451 (679)
Q Consensus 441 ~v~lLrGNHE~ 451 (679)
.+ +..||||.
T Consensus 72 d~-~~~GNHef 81 (257)
T cd07408 72 DA-VTPGNHEF 81 (257)
T ss_pred cE-Eccccccc
Confidence 33 45699995
No 150
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=82.57 E-value=1.2 Score=51.52 Aligned_cols=69 Identities=26% Similarity=0.268 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHcCCe----EEEecccccc--cceE-EecCCeEEEE---eeccccCCCCCCeEEEEEEcCCceEEeEEec
Q 005755 560 GPDRVSDFCKRNKLQ----LIIRAHECVM--DGFE-RFAQGQLITL---FSATNYCGTANNAGAILVVGRGLVVVPKLIH 629 (679)
Q Consensus 560 g~~~~~~fl~~n~l~----~IiRgHe~v~--~G~~-~~~~~~liTv---FSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~ 629 (679)
.++..+..|+.+||+ .||-||.+|. +|=. .-++||++.| ||.. |....+=+|=-| |.+.--+....-+
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TGIAGYTL-iyNS~gl~L~~H~ 584 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTGIAGYTL-IYNSYGLQLVAHQ 584 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccCccceEE-EecCCcceeccCC
Confidence 567888899999999 9999999986 5643 4689999999 7765 555544445444 4343334444444
Q ss_pred C
Q 005755 630 P 630 (679)
Q Consensus 630 ~ 630 (679)
|
T Consensus 585 p 585 (640)
T PF06874_consen 585 P 585 (640)
T ss_pred C
Confidence 4
No 151
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=81.20 E-value=3.2 Score=43.39 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=20.5
Q ss_pred EEEeccccCCCCCc-----HHHHHHHHHHHHhcCCCeEEecCCccc
Q 005755 411 YLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRGNHEA 451 (679)
Q Consensus 411 ~vFLGDyVDRG~~s-----levl~lL~~lk~~~P~~v~lLrGNHE~ 451 (679)
+|..||+++..+.+ ..++.+|-++ + --.+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g-~da~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----G-VDAMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----C-CeEEe-ccccc
Confidence 45599999887643 2334444333 2 22344 99996
No 152
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=78.32 E-value=4.5 Score=42.84 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=29.5
Q ss_pred eEEEeccccCCCCCcH--H------HHHHHHHHHHhcCC-CeEEecCCcccchh
Q 005755 410 DYLFLGDYVDRGQHSL--E------TITLLLALKIEYPE-NVHLIRGNHEAADI 454 (679)
Q Consensus 410 ~~vFLGDyVDRG~~sl--e------vl~lL~~lk~~~P~-~v~lLrGNHE~~~~ 454 (679)
-+|+.||+|+.+.... + .-.+...++..+|. .|+.+.||||....
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~ 124 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV 124 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc
Confidence 5888999998876421 1 22233335544553 59999999998654
No 153
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=73.54 E-value=72 Score=32.17 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=65.0
Q ss_pred EeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEE-EECC-----EEEEEecccCCCCcccCC
Q 005755 8 RSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAV-FVGA-----RLHVTGGALRGGRAIEGE 81 (679)
Q Consensus 8 ~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaa-vvg~-----~LyV~GG~~~~~~~~~~~ 81 (679)
.+||.+.+..+ ..+.+.+|.++.|.++..+...+.....+... -.+. |++.+....... ..
T Consensus 3 sCnGLlc~~~~---------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~----~~ 69 (230)
T TIGR01640 3 PCDGLICFSYG---------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR----NQ 69 (230)
T ss_pred ccceEEEEecC---------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC----CC
Confidence 46887766542 23558899999998775331100001111111 1121 455554332111 12
Q ss_pred CeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEEEEeCCCCc
Q 005755 82 AAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQ 158 (679)
Q Consensus 82 ~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~~~D~~~~~ 158 (679)
..+++|+..++.|+.+... ++ .. ...+. .+.++|.||-+.-...+.....+..||..+-+
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~----~~--~~----------~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~ 129 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECS----PP--HH----------PLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSER 129 (230)
T ss_pred ccEEEEEeCCCCccccccC----CC--Cc----------cccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccce
Confidence 3589999999999987632 11 00 11122 67889999988754322222258889977633
No 154
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=73.28 E-value=4.7 Score=51.22 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=38.6
Q ss_pred CeEEEccCCCCHHHH---HHHHHHhCCCCCCCCCceeeEEEeccccCCCCCc-----HHHHHHHHHHHHhcCCCeEEecC
Q 005755 376 PVKVFGDLHGQFGDL---MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRG 447 (679)
Q Consensus 376 pi~ViGDIHG~~~dL---~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-----levl~lL~~lk~~~P~~v~lLrG 447 (679)
.|+.+.|+||.+..+ ..+++...-.... .-+|..||+++..+.+ ..++.+|-++. --.+..|
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~G 731 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPN-----TILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFG 731 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCC-----eEEEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEec
Confidence 378899999986443 4444443211111 1233389999987644 23444444432 3356899
Q ss_pred Cccc
Q 005755 448 NHEA 451 (679)
Q Consensus 448 NHE~ 451 (679)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9996
No 155
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=71.70 E-value=9.5 Score=40.35 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHc-CCeEEEeccccc
Q 005755 560 GPDRVSDFCKRN-KLQLIIRAHECV 583 (679)
Q Consensus 560 g~~~~~~fl~~n-~l~~IiRgHe~v 583 (679)
|.+.-.+++++. ++++||-||+-+
T Consensus 193 G~~~d~~la~~~~giD~IiggH~H~ 217 (281)
T cd07409 193 GYEVDKEIARKVPGVDVIVGGHSHT 217 (281)
T ss_pred CchhHHHHHHcCCCCcEEEeCCcCc
Confidence 444334555554 799999998654
No 156
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=66.44 E-value=64 Score=29.59 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=55.4
Q ss_pred EEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCCeEEE
Q 005755 7 ARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAV 86 (679)
Q Consensus 7 ~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v~v 86 (679)
...||.+|-.+-... ......-.++.++.+|+.+..|............+-++|+|-++.-..... ...-++|+
T Consensus 2 icinGvly~~a~~~~---~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~iWv 75 (129)
T PF08268_consen 2 ICINGVLYWLAWSED---SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSIDIWV 75 (129)
T ss_pred EEECcEEEeEEEECC---CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEEEEE
Confidence 346888877655411 112445568889999998886622334555667778899988876443211 12345899
Q ss_pred E-ECCCCcEEecc
Q 005755 87 L-DTAAGVWLDRN 98 (679)
Q Consensus 87 y-D~~t~~W~~i~ 98 (679)
+ |.+..+|.+..
T Consensus 76 LeD~~k~~Wsk~~ 88 (129)
T PF08268_consen 76 LEDYEKQEWSKKH 88 (129)
T ss_pred eeccccceEEEEE
Confidence 8 57778999875
No 157
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.37 E-value=12 Score=41.89 Aligned_cols=71 Identities=17% Similarity=0.323 Sum_probs=53.1
Q ss_pred cCCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCc
Q 005755 374 RAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 449 (679)
Q Consensus 374 ~~pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNH 449 (679)
++.|.||||.-|.+..|.+-.+...-. .| ++.-++++|++.+--.++-|++.+...- ...|-.+|++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk--~G--pFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKK--SG--PFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhc--CC--CceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 478999999999999998877665322 12 1225788999999877888888877654 36777788877665
No 158
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=65.39 E-value=8 Score=38.69 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=37.0
Q ss_pred eEEEccCCCC-----HHHHHHHHHHhC-CCCCCCCCceeeEEEeccccCCCCCcH-------------HHHHHHHHHHHh
Q 005755 377 VKVFGDLHGQ-----FGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRGQHSL-------------ETITLLLALKIE 437 (679)
Q Consensus 377 i~ViGDIHG~-----~~dL~~l~~~~g-~~~~~~~~~~~~~vFLGDyVDRG~~sl-------------evl~lL~~lk~~ 437 (679)
|+|++|+|=. ++-|.++|..+. ..... .+|++|+++|.-.... +-+..+..+...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~------~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPD------VLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTEC------EEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCc------EEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5677887755 556666676554 22222 7999999999633221 111122221111
Q ss_pred c--CCCeEEecCCcccchh
Q 005755 438 Y--PENVHLIRGNHEAADI 454 (679)
Q Consensus 438 ~--P~~v~lLrGNHE~~~~ 454 (679)
. --+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 1 2478999999998655
No 159
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=64.26 E-value=13 Score=38.61 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC-----cHHHHHHHHHHHHhcCCCeEEecCCccc
Q 005755 385 GQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-----SLETITLLLALKIEYPENVHLIRGNHEA 451 (679)
Q Consensus 385 G~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~-----slevl~lL~~lk~~~P~~v~lLrGNHE~ 451 (679)
|-+..+..+++...-... ..-+|..||+++..+. ...++..|-.+. --+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~-----~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENP-----NTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCC-----CEEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 446666677766543211 1146669999987753 244555555443 23567899995
No 160
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.75 E-value=26 Score=33.76 Aligned_cols=104 Identities=29% Similarity=0.370 Sum_probs=66.8
Q ss_pred eEEEccCCC--CHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchh
Q 005755 377 VKVFGDLHG--QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 454 (679)
Q Consensus 377 i~ViGDIHG--~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~ 454 (679)
+.++||+|= .-.+|-.-|+++-.|.. + ..++++|++ -|.|++.+|..+- ..++++||--|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgk---i--~hilctGNl-----cs~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGK---I--QHILCTGNL-----CSKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCc---e--eEEEEeCCc-----chHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 578999984 34455555666555532 2 178999996 4678999987764 6899999977653
Q ss_pred hhhcCChHHHHHHhCCCccchhhhhhhhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCccc
Q 005755 455 NALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM 523 (679)
Q Consensus 455 ~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~ilcvHgGi~p~l~~l~~I~~i~Rp~~~ 523 (679)
.+|.+.. ...+-.-||-||||-.--...+.+.+.-+.|-+++
T Consensus 67 -----------~~yP~~k----------------vvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldv 108 (183)
T KOG3325|consen 67 -----------LKYPENK----------------VVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDV 108 (183)
T ss_pred -----------ccCCccc----------------eEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCC
Confidence 2332210 00111238999999754444677777777786554
No 161
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=62.47 E-value=12 Score=39.85 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=14.0
Q ss_pred HHHHH---cCCeEEEecccccc
Q 005755 566 DFCKR---NKLQLIIRAHECVM 584 (679)
Q Consensus 566 ~fl~~---n~l~~IiRgHe~v~ 584 (679)
++.++ .++++||=||+-+.
T Consensus 200 ~lA~~~~~~giD~IigGHsH~~ 221 (285)
T cd07405 200 EMARALPAGGLDLIVGGHSQDP 221 (285)
T ss_pred HHHHhcCCCCCCEEEeCCCCcc
Confidence 45555 58999999997653
No 162
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=61.59 E-value=20 Score=37.97 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=38.0
Q ss_pred CEEEEEcccCCC--CCCccc----------eEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccC
Q 005755 11 GMFLLCGGRDAS--GAPLAD----------AYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALR 73 (679)
Q Consensus 11 g~l~vfGG~~~~--~~~l~d----------~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~ 73 (679)
...++||||..- +..... .+.+.+..-+..+....| ++-.....|.+..-++.+|++||-.-
T Consensus 102 ta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar~D~VYilGGHsl 175 (337)
T PF03089_consen 102 TACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLARNDCVYILGGHSL 175 (337)
T ss_pred EEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEecCceEEEEccEEc
Confidence 467889999742 111111 123444444444433333 45557788999999999999999753
No 163
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=57.65 E-value=81 Score=34.43 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=45.7
Q ss_pred EEeCCEEEEEcccCCCCCCcc---ceEEEEe--------CCCCcEEEEeCCCCCCCCCcc-------eEEEEE-CCEEEE
Q 005755 7 ARSDGMFLLCGGRDASGAPLA---DAYGLLM--------HRNGQWEWTLAPGVAPSPRYQ-------HAAVFV-GARLHV 67 (679)
Q Consensus 7 ~~~ng~l~vfGG~~~~~~~l~---d~~~l~~--------~~~~~W~wv~~~g~~P~pR~~-------Hsaavv-g~~LyV 67 (679)
...+++||+..........-. ..+..+. .....|.|...|. +|-.+.. .+-+++ |..|+|
T Consensus 114 v~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~v 192 (342)
T PF07893_consen 114 VSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFV 192 (342)
T ss_pred EEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEE
Confidence 445677998866543211100 0344442 2456699988663 3333322 244455 556777
Q ss_pred E-ecccCCCCcccCCCeEEEEECCCCcEEecc
Q 005755 68 T-GGALRGGRAIEGEAAVAVLDTAAGVWLDRN 98 (679)
Q Consensus 68 ~-GG~~~~~~~~~~~~~v~vyD~~t~~W~~i~ 98 (679)
. -|.. ..++.||+++.+|.+.-
T Consensus 193 S~~~~~---------~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 193 SVNGRR---------WGTYSFDTESHEWRKHG 215 (342)
T ss_pred EecCCc---------eEEEEEEcCCcceeecc
Confidence 3 2221 13899999999999874
No 164
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=56.52 E-value=16 Score=42.18 Aligned_cols=69 Identities=26% Similarity=0.296 Sum_probs=41.4
Q ss_pred CCeEEEccCCCCHH------------HHHHHHHHhCCCCCCCCCceeeEEE-eccccCCCC------CcHHHHHHHHHHH
Q 005755 375 APVKVFGDLHGQFG------------DLMRLFDEYGFPSTAGDITYIDYLF-LGDYVDRGQ------HSLETITLLLALK 435 (679)
Q Consensus 375 ~pi~ViGDIHG~~~------------dL~~l~~~~g~~~~~~~~~~~~~vF-LGDyVDRG~------~slevl~lL~~lk 435 (679)
-.|+-..|+||.+. .+-++.........+.. . .+++ .||+++..+ ....++.+|-.|+
T Consensus 27 l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~--~-~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~ 103 (517)
T COG0737 27 LTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENK--N-VLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG 103 (517)
T ss_pred EEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcC--C-eEEEeCCcccCCccccccccCCChHHHHHhhcC
Confidence 45788999999998 44444322221111111 1 3344 999999844 3345666666665
Q ss_pred HhcCCCeEEecCCccc
Q 005755 436 IEYPENVHLIRGNHEA 451 (679)
Q Consensus 436 ~~~P~~v~lLrGNHE~ 451 (679)
-=.+-.||||.
T Consensus 104 -----yDa~tiGNHEF 114 (517)
T COG0737 104 -----YDAMTLGNHEF 114 (517)
T ss_pred -----CcEEeeccccc
Confidence 23577899997
No 165
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=55.26 E-value=13 Score=41.70 Aligned_cols=57 Identities=28% Similarity=0.315 Sum_probs=41.0
Q ss_pred ChhHHHHHHHHcCCe----EEEecccccccceE---EecCCeEEEE---eeccccCCCCCCeEEEEEE
Q 005755 560 GPDRVSDFCKRNKLQ----LIIRAHECVMDGFE---RFAQGQLITL---FSATNYCGTANNAGAILVV 617 (679)
Q Consensus 560 g~~~~~~fl~~n~l~----~IiRgHe~v~~G~~---~~~~~~liTv---FSa~~Y~~~~~N~ga~l~i 617 (679)
.++...+.|+.+||+ .||-||.+|.++-. .-++||+|-| ||- -|..+.+=+|--|..
T Consensus 514 de~ic~kil~eFGLdpe~ghiINGHtPVke~~GE~PIKAngKliVIDGGFsk-AYqs~TgiAGYTllY 580 (648)
T COG3855 514 DEEICRKILEEFGLDPEGGHIINGHTPVKEKNGENPIKANGKLIVIDGGFSK-AYQSTTGIAGYTLLY 580 (648)
T ss_pred hHHHHHHHHHHhCCCcccCceecCCCcccccCCCCCccCCCeEEEEcCchhh-hhhcccccceeEeee
Confidence 456778899999998 79999999976432 4589999988 664 365555555544433
No 166
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=53.45 E-value=2.5e+02 Score=28.20 Aligned_cols=103 Identities=9% Similarity=0.032 Sum_probs=59.7
Q ss_pred eEEEEeCCCCcEEEEeCCCCCCCCCcceEEEEECCEEEEEecccCCCCcccCCCeEEEEECCCCcEEe-cccCcCCCCCC
Q 005755 29 AYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLD-RNGLVTSSRTS 107 (679)
Q Consensus 29 ~~~l~~~~~~~W~wv~~~g~~P~pR~~Hsaavvg~~LyV~GG~~~~~~~~~~~~~v~vyD~~t~~W~~-i~~~~~~~~p~ 107 (679)
...++...++.|+.+... .+.....+..++++|.||-+.-...+. ....+..||.++.+|.. ++. |.
T Consensus 71 ~~~Vys~~~~~Wr~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~----~~~~IvsFDl~~E~f~~~i~~------P~ 138 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECS--PPHHPLKSRGVCINGVLYYLAYTLKTN----PDYFIVSFDVSSERFKEFIPL------PC 138 (230)
T ss_pred cEEEEEeCCCCccccccC--CCCccccCCeEEECCEEEEEEEECCCC----CcEEEEEEEcccceEeeeeec------Cc
Confidence 456777788889776522 222122223778899999887442211 01258899999999995 542 11
Q ss_pred CCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEEEEe
Q 005755 108 KGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAE 153 (679)
Q Consensus 108 ~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~~~D 153 (679)
.... .......+.++|++.+....... ..-++|+++
T Consensus 139 ~~~~---------~~~~~~L~~~~G~L~~v~~~~~~-~~~~IWvl~ 174 (230)
T TIGR01640 139 GNSD---------SVDYLSLINYKGKLAVLKQKKDT-NNFDLWVLN 174 (230)
T ss_pred cccc---------cccceEEEEECCEEEEEEecCCC-CcEEEEEEC
Confidence 1110 11123456778998887654322 225788876
No 167
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=52.49 E-value=22 Score=37.85 Aligned_cols=38 Identities=24% Similarity=0.127 Sum_probs=23.1
Q ss_pred eEEEeccccCCCCCc-------HHHHHHHHHHHHhcCCCeEEecCCcccc
Q 005755 410 DYLFLGDYVDRGQHS-------LETITLLLALKIEYPENVHLIRGNHEAA 452 (679)
Q Consensus 410 ~~vFLGDyVDRG~~s-------levl~lL~~lk~~~P~~v~lLrGNHE~~ 452 (679)
-+|..||+++.-+.+ .-++.++-.+. -=.+..||||.-
T Consensus 53 Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~mg-----yDa~tlGNHEFd 97 (282)
T cd07407 53 LLVDTGDLHDGNGLSDASPPPGSYSNPIFRMMP-----YDLLTIGNHELY 97 (282)
T ss_pred EEEeCCCccCCeeceeeecCCChHHHHHHHhcC-----CcEEeecccccC
Confidence 355599999865432 22344444432 446789999983
No 168
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=51.77 E-value=19 Score=39.29 Aligned_cols=72 Identities=26% Similarity=0.415 Sum_probs=43.6
Q ss_pred CeEEEccCCCCHHHHHHHHHH---hCCCCCCCCCceeeEEEeccccC-CCCCcHHHHH------------HHHHHHHhcC
Q 005755 376 PVKVFGDLHGQFGDLMRLFDE---YGFPSTAGDITYIDYLFLGDYVD-RGQHSLETIT------------LLLALKIEYP 439 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~---~g~~~~~~~~~~~~~vFLGDyVD-RG~~slevl~------------lL~~lk~~~P 439 (679)
+|.|-|=-||+++.+-+-+.. .|-.+.+ -+|++||+=- |...-+.++. --+.=.++.|
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~tkVD------LLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~AP 75 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGNTKVD------LLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAP 75 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCCCCcc------EEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCc
Confidence 477889999999998855443 3322333 6888999853 3322222211 1111133456
Q ss_pred CCeEEecCCcccch
Q 005755 440 ENVHLIRGNHEAAD 453 (679)
Q Consensus 440 ~~v~lLrGNHE~~~ 453 (679)
=--++|=||||.+.
T Consensus 76 VlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 76 VLTIFIGGNHEASN 89 (456)
T ss_pred eeEEEecCchHHHH
Confidence 56678999999875
No 169
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=46.37 E-value=31 Score=37.25 Aligned_cols=69 Identities=22% Similarity=0.120 Sum_probs=38.3
Q ss_pred eEEEccCCCCHH------HHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC-------------cHHHHHHHHHHHHh
Q 005755 377 VKVFGDLHGQFG------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-------------SLETITLLLALKIE 437 (679)
Q Consensus 377 i~ViGDIHG~~~------dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~-------------slevl~lL~~lk~~ 437 (679)
|+-+.|+||++. .+..+++...-..... ....-+|..||.+.-++. ..-++.+|-++.
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~-~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAAE-YDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhcc-CCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 567889999964 3333344432110000 011246669999876543 334455555554
Q ss_pred cCCCeEEecCCccc
Q 005755 438 YPENVHLIRGNHEA 451 (679)
Q Consensus 438 ~P~~v~lLrGNHE~ 451 (679)
-=.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 33577999995
No 170
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=46.03 E-value=63 Score=34.54 Aligned_cols=76 Identities=13% Similarity=0.258 Sum_probs=48.4
Q ss_pred CCeEEEccCCC----CHHHHHHHHHHhC-CCCCCCCCceeeEEEeccccCCC----CCc----HHHHHHHHHH-HHhcC-
Q 005755 375 APVKVFGDLHG----QFGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRG----QHS----LETITLLLAL-KIEYP- 439 (679)
Q Consensus 375 ~pi~ViGDIHG----~~~dL~~l~~~~g-~~~~~~~~~~~~~vFLGDyVDRG----~~s----levl~lL~~l-k~~~P- 439 (679)
..++|+||+|= .++.|.++|+.+. .-+++ . ...-+||+|+++-+. ..+ .|-..-|..+ ..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~-~-~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPEN-E-LPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCccc-C-CCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 45899999994 5777888888773 21211 1 133799999998763 222 2333334332 23455
Q ss_pred ----CCeEEecCCcccc
Q 005755 440 ----ENVHLIRGNHEAA 452 (679)
Q Consensus 440 ----~~v~lLrGNHE~~ 452 (679)
.++++++|-.|-.
T Consensus 106 L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHhcCeEEEECCCCCCC
Confidence 6899999999974
No 171
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=41.52 E-value=57 Score=34.50 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=43.7
Q ss_pred CeEEEccCCCC--HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCC-CCcHHHHHHHHHHHHhcCCCeEEecCCcccc
Q 005755 376 PVKVFGDLHGQ--FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEAA 452 (679)
Q Consensus 376 pi~ViGDIHG~--~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG-~~slevl~lL~~lk~~~P~~v~lLrGNHE~~ 452 (679)
.|.++|||=|. -..|...|..+......+ -+|..||...-| --+-++...|+.+- -.++.+ |||+.-
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D-----~vIaNgEn~~gG~Gi~~~~~~~L~~~G----vDviT~-GNH~~D 71 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQAD-----LVIANGENTTHGKGLTLKIYEFLKQSG----VNYITM-GNHTWF 71 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCC-----EEEEcCcccCCCCCCCHHHHHHHHhcC----CCEEEc-cchhcc
Confidence 47899999999 455566665554322110 345579999766 45678888887653 345555 999974
No 172
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=41.29 E-value=33 Score=37.39 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=29.4
Q ss_pred eEEEeccccCCCC--CcHHHHHHHHHHHHhcCCCeEEecCCcccch
Q 005755 410 DYLFLGDYVDRGQ--HSLETITLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 410 ~~vFLGDyVDRG~--~slevl~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
-+||+||.|+.-. +..++|...++=-+.+.=-.-.+.||||+..
T Consensus 103 lVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 103 LVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred EEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 6899999999621 3344555555545555445678999999753
No 173
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=41.24 E-value=5e+02 Score=28.46 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=56.1
Q ss_pred EEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCC----CC---CCCcceEEEEECCEEEEEecccCCCCccc
Q 005755 7 ARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGV----AP---SPRYQHAAVFVGARLHVTGGALRGGRAIE 79 (679)
Q Consensus 7 ~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~----~P---~pR~~Hsaavvg~~LyV~GG~~~~~~~~~ 79 (679)
+..++++|+.+... .+..++..+++-.|...... .+ .++..-+.++.++++|+.+ .
T Consensus 66 vv~~~~vy~~~~~g--------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-~-------- 128 (394)
T PRK11138 66 AVAYNKVYAADRAG--------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS-E-------- 128 (394)
T ss_pred EEECCEEEEECCCC--------eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc-C--------
Confidence 66788888865321 22345666666444432211 00 1122224566788888733 2
Q ss_pred CCCeEEEEECCCC--cEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEEEEeCCC
Q 005755 80 GEAAVAVLDTAAG--VWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSP 156 (679)
Q Consensus 80 ~~~~v~vyD~~t~--~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~~~D~~~ 156 (679)
...++.+|.+++ .|+.-..- . ...+.++.++.+|+..+- ..++.+|..+
T Consensus 129 -~g~l~ald~~tG~~~W~~~~~~---~------------------~~ssP~v~~~~v~v~~~~------g~l~ald~~t 179 (394)
T PRK11138 129 -KGQVYALNAEDGEVAWQTKVAG---E------------------ALSRPVVSDGLVLVHTSN------GMLQALNESD 179 (394)
T ss_pred -CCEEEEEECCCCCCcccccCCC---c------------------eecCCEEECCEEEEECCC------CEEEEEEccC
Confidence 123889998886 48653210 0 012234567888875431 2478888654
No 174
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=40.10 E-value=37 Score=43.35 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=16.1
Q ss_pred hhHHHHHHHH-cCCeEEEeccccc
Q 005755 561 PDRVSDFCKR-NKLQLIIRAHECV 583 (679)
Q Consensus 561 ~~~~~~fl~~-n~l~~IiRgHe~v 583 (679)
++++.+..++ -++++||-||+-.
T Consensus 256 en~~~~la~~~~gID~Il~GHsH~ 279 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQHG 279 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCCcc
Confidence 3445566655 4899999999743
No 175
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=40.05 E-value=55 Score=32.65 Aligned_cols=40 Identities=30% Similarity=0.330 Sum_probs=29.5
Q ss_pred eEEEecccc--CCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccch
Q 005755 410 DYLFLGDYV--DRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 453 (679)
Q Consensus 410 ~~vFLGDyV--DRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~ 453 (679)
.++.-||+- -|=+...|-+.+|-+| |+.=+++|||||.+.
T Consensus 46 iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw 87 (230)
T COG1768 46 IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWW 87 (230)
T ss_pred EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCcccc
Confidence 466678875 3555666667777665 788899999999864
No 176
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=39.97 E-value=44 Score=39.91 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=40.5
Q ss_pred ecCCeEEEccCCCCHHH----------------HHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcH-----------
Q 005755 373 LRAPVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL----------- 425 (679)
Q Consensus 373 l~~pi~ViGDIHG~~~d----------------L~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~sl----------- 425 (679)
+.-.|.-..|+||++.. +..+++...-.. ...-+|-.||.+...+.+-
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-----~n~llvD~GD~~qGsp~~~~~~~~~~~~g~ 98 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEA-----KNSVLVDNGDLIQGSPLGDYMAAKGLKAGD 98 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhC-----CCEEEEECCCcCCCchhhhhhhhccccCCC
Confidence 34567889999999743 223333332111 1124566999998665431
Q ss_pred --HHHHHHHHHHHhcCCCeEEecCCccc
Q 005755 426 --ETITLLLALKIEYPENVHLIRGNHEA 451 (679)
Q Consensus 426 --evl~lL~~lk~~~P~~v~lLrGNHE~ 451 (679)
-++..|-.|. -=....||||.
T Consensus 99 ~~p~i~amN~lg-----yDa~tlGNHEF 121 (649)
T PRK09420 99 VHPVYKAMNTLD-----YDVGNLGNHEF 121 (649)
T ss_pred cchHHHHHHhcC-----CcEEeccchhh
Confidence 2455555553 34678899996
No 177
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=39.55 E-value=43 Score=39.80 Aligned_cols=66 Identities=20% Similarity=0.082 Sum_probs=37.7
Q ss_pred CeEEEccCCCCHHH----------------HHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCc-------------HH
Q 005755 376 PVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------LE 426 (679)
Q Consensus 376 pi~ViGDIHG~~~d----------------L~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-------------le 426 (679)
.|+-..||||++.. +..+++...-... ..-+|-.||.+...+.+ .-
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p 78 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVK-----NSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHP 78 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCC-----CeEEEECCCcCCCccchhhhhhccccCCCcCh
Confidence 46778999999753 2333443321111 12455699999865533 12
Q ss_pred HHHHHHHHHHhcCCCeEEecCCccc
Q 005755 427 TITLLLALKIEYPENVHLIRGNHEA 451 (679)
Q Consensus 427 vl~lL~~lk~~~P~~v~lLrGNHE~ 451 (679)
++.+|-.|. -=....||||.
T Consensus 79 ~~~~mN~lg-----yDa~tlGNHEF 98 (626)
T TIGR01390 79 VYKAMNLLK-----YDVGNLGNHEF 98 (626)
T ss_pred HHHHHhhcC-----ccEEecccccc
Confidence 444444443 33577899995
No 178
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=38.06 E-value=94 Score=33.12 Aligned_cols=58 Identities=7% Similarity=0.055 Sum_probs=37.6
Q ss_pred eEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEE-CCEEEEEcCCCCCC-CcCcEEEEeCCCCcc
Q 005755 83 AVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI-GVRIYIYGGLKGDI-LLDDFLVAENSPFQS 159 (679)
Q Consensus 83 ~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~-~g~IYV~GG~~~~~-~l~dl~~~D~~~~~~ 159 (679)
.++.||+.+.+|..+..-..| -- +++..+ ++.|||.|-+.-.. ....+-.||...-.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G------------------~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISG------------------TV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred EEEEEECCCCEeecCCCCceE------------------EE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 499999999999987633112 11 333333 78899888775544 455566777665444
No 179
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=36.99 E-value=3.4e+02 Score=29.77 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=19.1
Q ss_pred EEEEECCEEEEEecccCCCCcccCCCeEEEEECCCCc--EEe
Q 005755 57 AAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WLD 96 (679)
Q Consensus 57 saavvg~~LyV~GG~~~~~~~~~~~~~v~vyD~~t~~--W~~ 96 (679)
+.++.++++|+.... ..++++|..+++ |+.
T Consensus 330 sp~v~~g~l~v~~~~----------G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 330 APVLYNGYLVVGDSE----------GYLHWINREDGRFVAQQ 361 (394)
T ss_pred CCEEECCEEEEEeCC----------CEEEEEECCCCCEEEEE
Confidence 455678888764221 238889988875 543
No 180
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=35.21 E-value=41 Score=35.13 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=34.3
Q ss_pred ChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccc
Q 005755 560 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATN 603 (679)
Q Consensus 560 g~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~~ 603 (679)
....+.+||+.+|..+. +|++.+||.|+.++-+|+||---.
T Consensus 139 ~~~~~~~fl~~lGy~~~---~Eyv~~G~~F~~g~i~I~l~ri~~ 179 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRFD---YEYVVEGYRFFKGDIVIELFRIFK 179 (250)
T ss_dssp SSSSHHHHHHHTTEEEE---EEEEEEEEEEEECCEEEEEEEEEE
T ss_pred CCCCHHHHHHHcCCceE---EEEEEEEEEEEECCEEEEEEEEEe
Confidence 45678899999998765 999999999999998888876443
No 181
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=34.82 E-value=71 Score=37.27 Aligned_cols=37 Identities=24% Similarity=0.089 Sum_probs=23.6
Q ss_pred eEEEeccccCCCCCc-----HHHHHHHHHHHHhcCCCeEEecCCccc
Q 005755 410 DYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRGNHEA 451 (679)
Q Consensus 410 ~~vFLGDyVDRG~~s-----levl~lL~~lk~~~P~~v~lLrGNHE~ 451 (679)
-+|..||.+...+.+ ..++.+|-++. --.+..||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g-----~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAAG-----FDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhccC-----CCEEEeccccc
Confidence 466799999765432 33444444443 44678999996
No 182
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=33 Score=36.26 Aligned_cols=69 Identities=29% Similarity=0.350 Sum_probs=42.8
Q ss_pred CeEEEcc--CCCCHHHHHHHHHHhCCCCCCCCCceeeE-EEecccc-CCCC---------CcHHHHHHHHHHHHhcCCCe
Q 005755 376 PVKVFGD--LHGQFGDLMRLFDEYGFPSTAGDITYIDY-LFLGDYV-DRGQ---------HSLETITLLLALKIEYPENV 442 (679)
Q Consensus 376 pi~ViGD--IHG~~~dL~~l~~~~g~~~~~~~~~~~~~-vFLGDyV-DRG~---------~slevl~lL~~lk~~~P~~v 442 (679)
.+.|||| .+|.|..-+-.+.....- +.-++ ++ |-+||-+ |-|. .+.|-+.---+|. +..
T Consensus 45 sflvvGDwGr~g~~nqs~va~qmg~ig-e~l~i---dfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQ----kpW 116 (336)
T KOG2679|consen 45 SFLVVGDWGRRGSFNQSQVALQMGEIG-EKLDI---DFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQ----KPW 116 (336)
T ss_pred EEEEEcccccCCchhHHHHHHHHHhHH-Hhccc---eEEEecCCcccccCCCCCCChhHHhhhhhcccCcccc----cch
Confidence 4899999 799998877666553322 11112 44 4499966 5554 3444444444443 357
Q ss_pred EEecCCcccc
Q 005755 443 HLIRGNHEAA 452 (679)
Q Consensus 443 ~lLrGNHE~~ 452 (679)
+.+.||||..
T Consensus 117 y~vlGNHDyr 126 (336)
T KOG2679|consen 117 YSVLGNHDYR 126 (336)
T ss_pred hhhccCcccc
Confidence 8899999974
No 183
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=31.55 E-value=45 Score=30.06 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCCceeeChhHHHHHHHHcCCeEEEecccccccceEE------ecCCeEEEEeec---cccCCCCCCeEEEEEEcCCc
Q 005755 553 GPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFER------FAQGQLITLFSA---TNYCGTANNAGAILVVGRGL 621 (679)
Q Consensus 553 g~g~~~fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~------~~~~~liTvFSa---~~Y~~~~~N~ga~l~i~~~~ 621 (679)
.+|.+.+|.+.+.+-+++...+++|.+-++-+++-+- +++-.+++.|+. ..-||. .+.+++.+.++.+
T Consensus 14 rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 14 KAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred HhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 3455789999999999999999999999998887542 234567888776 245775 3477777777654
No 184
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=30.91 E-value=3.3e+02 Score=29.75 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=36.7
Q ss_pred EEEEECCEEEEEecccCCCCcccCCCeEEEEECCCCcEEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEE
Q 005755 57 AAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYI 136 (679)
Q Consensus 57 saavvg~~LyV~GG~~~~~~~~~~~~~v~vyD~~t~~W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV 136 (679)
.+++.+.+|++.+.. ..+.+||+++..=...+.+ ..+...-.++.++++||+
T Consensus 71 F~al~gskIv~~d~~----------~~t~vyDt~t~av~~~P~l------------------~~pk~~pisv~VG~~LY~ 122 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS----------GRTLVYDTDTRAVATGPRL------------------HSPKRCPISVSVGDKLYA 122 (342)
T ss_pred EEEecCCeEEEEcCC----------CCeEEEECCCCeEeccCCC------------------CCCCcceEEEEeCCeEEE
Confidence 344458888887554 1278999999865544432 112223467778999999
Q ss_pred EcCCC
Q 005755 137 YGGLK 141 (679)
Q Consensus 137 ~GG~~ 141 (679)
.-...
T Consensus 123 m~~~~ 127 (342)
T PF07893_consen 123 MDRSP 127 (342)
T ss_pred eeccC
Confidence 98764
No 185
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=30.86 E-value=1.2e+02 Score=31.85 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=40.4
Q ss_pred CeEEEccCCCCHHH--HHHHHHHhCCCCCCCCCceeeEEEeccccCCC-CCcHHHHHHHHHHHHhcCCCeEEecCCccc
Q 005755 376 PVKVFGDLHGQFGD--LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEA 451 (679)
Q Consensus 376 pi~ViGDIHG~~~d--L~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG-~~slevl~lL~~lk~~~P~~v~lLrGNHE~ 451 (679)
.|.++|||=|.... +...|..+.-.... + -+|-.||..--| .-+-++...|..+.. .+..+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~-D----~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI-D----FVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC-C----EEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-ccccc
Confidence 37899999998643 34444443211111 0 244479998766 367788888877642 34444 99985
No 186
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=30.76 E-value=1.7e+02 Score=29.40 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=62.0
Q ss_pred eeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchhhhhcCChH---HHHHHh---------CCCccchh
Q 005755 409 IDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRL---ECIERM---------GENDGIWA 476 (679)
Q Consensus 409 ~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~~~~~gf~~---e~~~~~---------~~~~~~~~ 476 (679)
..+|||| .|-+--|++.||-+|+.+|-.+.++ .|+-|.+..++.--|.. +|..++ |...-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3689998 5889999999999999999766555 89999988876655442 121111 11111234
Q ss_pred hhhhhhhhccCCceEEEcCcEEEecC-CcC
Q 005755 477 WTRFNQLFNCLPLAALIEKKIICMHG-GIG 505 (679)
Q Consensus 477 ~~~~~~~f~~LPlaa~i~~~ilcvHg-Gi~ 505 (679)
|..+..+.-.+++...+-..++.+-| |-.
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NGPGTC 144 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNGPGTC 144 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECCCCcE
Confidence 56666777777777777667777776 543
No 187
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=30.56 E-value=67 Score=37.40 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=13.7
Q ss_pred HHHHHc---CCeEEEeccccc
Q 005755 566 DFCKRN---KLQLIIRAHECV 583 (679)
Q Consensus 566 ~fl~~n---~l~~IiRgHe~v 583 (679)
+++++. ++++||=||+-.
T Consensus 236 ~la~~~~~~~IDvIlgGHsH~ 256 (551)
T PRK09558 236 EMARSLPAGGLDMIVGGHSQD 256 (551)
T ss_pred HHHHhCCccCceEEEeCCCCc
Confidence 455555 799999999863
No 188
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=28.53 E-value=87 Score=38.40 Aligned_cols=67 Identities=21% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCeEEEccCCCCHHHH----------------HHHHHHhCCCCCCCCCceeeEEEeccccCCCCCc--------------
Q 005755 375 APVKVFGDLHGQFGDL----------------MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------- 424 (679)
Q Consensus 375 ~pi~ViGDIHG~~~dL----------------~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-------------- 424 (679)
-.|+-..|+||++... ..+++...-.. ...-+|..||++..-+.+
T Consensus 116 LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-----~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~ 190 (814)
T PRK11907 116 VRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-----PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQ 190 (814)
T ss_pred EEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-----CCEEEEecCCCCCCCcccchhhhccccccCcc
Confidence 4578899999996432 22233321110 112456699999865432
Q ss_pred HHHHHHHHHHHHhcCCCeEEecCCccc
Q 005755 425 LETITLLLALKIEYPENVHLIRGNHEA 451 (679)
Q Consensus 425 levl~lL~~lk~~~P~~v~lLrGNHE~ 451 (679)
.-++.+|-.|. .=.+..||||.
T Consensus 191 ~P~i~amN~LG-----yDA~tLGNHEF 212 (814)
T PRK11907 191 HPMYAALEALG-----FDAGTLGNHEF 212 (814)
T ss_pred hHHHHHHhccC-----CCEEEechhhc
Confidence 12455555553 34678899996
No 189
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=27.97 E-value=71 Score=35.72 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCeEEEeccccccc
Q 005755 563 RVSDFCKRNKLQLIIRAHECVMD 585 (679)
Q Consensus 563 ~~~~fl~~n~l~~IiRgHe~v~~ 585 (679)
.++-.|+++++++.|-||+-..+
T Consensus 239 ~L~PLL~ky~VdlYisGHDH~lq 261 (394)
T PTZ00422 239 YLLPLLKDAQVDLYISGYDRNME 261 (394)
T ss_pred HHHHHHHHcCcCEEEEccccceE
Confidence 67789999999999999997543
No 190
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=27.35 E-value=93 Score=36.63 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=34.6
Q ss_pred eEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEEecCCcccchh
Q 005755 410 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 454 (679)
Q Consensus 410 ~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~lLrGNHE~~~~ 454 (679)
++-.+||+.||||.+--++..|+... +|=+-.||||-..+
T Consensus 187 hLHIvGDIyDRGp~pd~ImD~Lm~~h-----svDIQWGNHDIlWM 226 (640)
T PF06874_consen 187 HLHIVGDIYDRGPRPDKIMDRLMNYH-----SVDIQWGNHDILWM 226 (640)
T ss_pred heeecccccCCCCChhHHHHHHhcCC-----CccccccchHHHHH
Confidence 67789999999999999999998753 78899999996543
No 191
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=25.68 E-value=2.4e+02 Score=27.44 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=42.3
Q ss_pred EEEccCCCCHHHHHHHHH-HhCC----CCC--CCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeEE
Q 005755 378 KVFGDLHGQFGDLMRLFD-EYGF----PST--AGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHL 444 (679)
Q Consensus 378 ~ViGDIHG~~~dL~~l~~-~~g~----~~~--~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~l 444 (679)
+|+.=.+||-..+-+.+. .++. +.. ......-.+||||=.+|+|.-.-++..+|-.|+ +++|++
T Consensus 2 IvYsS~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~---~KkV~l 72 (160)
T PF12641_consen 2 IVYSSRTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDKDMKEFLKKLK---GKKVAL 72 (160)
T ss_pred EEEECCCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCHHHHHHHHHcc---CCeEEE
Confidence 556667788777765543 3332 000 000223379999999999999999999998875 456665
No 192
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=23.40 E-value=1.2e+03 Score=27.04 Aligned_cols=116 Identities=15% Similarity=0.213 Sum_probs=56.6
Q ss_pred EEeCCEEEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCC----CC---CCCcceEEEEECCEEEEEecccCCCCccc
Q 005755 7 ARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGV----AP---SPRYQHAAVFVGARLHVTGGALRGGRAIE 79 (679)
Q Consensus 7 ~~~ng~l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~----~P---~pR~~Hsaavvg~~LyV~GG~~~~~~~~~ 79 (679)
...+++||+..... ..+ .++..+++-.|...... .+ ......+.++.++++|+.. .
T Consensus 66 vv~~g~vyv~s~~g-------~v~-AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~-------- 128 (527)
T TIGR03075 66 LVVDGVMYVTTSYS-------RVY-ALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-L-------- 128 (527)
T ss_pred EEECCEEEEECCCC-------cEE-EEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-C--------
Confidence 56678887754311 223 34666666333322211 01 0011224566778887632 1
Q ss_pred CCCeEEEEECCCCc--EEecccCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcCCCCCCCcCcEEEEeCCC
Q 005755 80 GEAAVAVLDTAAGV--WLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSP 156 (679)
Q Consensus 80 ~~~~v~vyD~~t~~--W~~i~~~~~~~~p~~r~~~~~~~~~l~~R~~Haa~~~~g~IYV~GG~~~~~~l~dl~~~D~~~ 156 (679)
...++.+|.++++ |..-..- ... + ....-+-++.+++||+-...........+..||..+
T Consensus 129 -dg~l~ALDa~TGk~~W~~~~~~---~~~----~---------~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~T 190 (527)
T TIGR03075 129 -DARLVALDAKTGKVVWSKKNGD---YKA----G---------YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKT 190 (527)
T ss_pred -CCEEEEEECCCCCEEeeccccc---ccc----c---------ccccCCcEEECCEEEEeecccccCCCcEEEEEECCC
Confidence 1238999998875 8653210 000 0 011123456788888753221112334677888654
No 193
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=22.83 E-value=64 Score=34.21 Aligned_cols=62 Identities=27% Similarity=0.320 Sum_probs=38.1
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCcHHHHHH---HHHHHHhcCCCeEEecCCcccc
Q 005755 376 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITL---LLALKIEYPENVHLIRGNHEAA 452 (679)
Q Consensus 376 pi~ViGDIHG~~~dL~~l~~~~g~~~~~~~~~~~~~vFLGDyVDRG~~slevl~l---L~~lk~~~P~~v~lLrGNHE~~ 452 (679)
..+.|+|.|....+.. ..|+.+ -++-+||+-.-|. +-||+.+ +-+|.-+ .=+.|+||||..
T Consensus 63 r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~-~~ev~~fn~~~gslph~---yKIVIaGNHELt 126 (305)
T KOG3947|consen 63 RFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGL-PEEVIKFNEWLGSLPHE---YKIVIAGNHELT 126 (305)
T ss_pred EEEEecCcccccCccc------cCCCCc------eEEeccCCccccC-HHHHHhhhHHhccCcce---eeEEEeecccee
Confidence 4899999998766643 233322 3567999877654 2344433 3333322 336799999985
Q ss_pred h
Q 005755 453 D 453 (679)
Q Consensus 453 ~ 453 (679)
.
T Consensus 127 F 127 (305)
T KOG3947|consen 127 F 127 (305)
T ss_pred e
Confidence 4
No 194
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=22.81 E-value=4.1e+02 Score=30.26 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=40.6
Q ss_pred eEEeCCE-EEEEcccCCCCCCccceEEEEeCCCCcEEEEeCCCCCCCCCcce-EEEEECCEEEEEecccCCCCcccCCCe
Q 005755 6 SARSDGM-FLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQH-AAVFVGARLHVTGGALRGGRAIEGEAA 83 (679)
Q Consensus 6 ~~~~ng~-l~vfGG~~~~~~~l~d~~~l~~~~~~~W~wv~~~g~~P~pR~~H-saavvg~~LyV~GG~~~~~~~~~~~~~ 83 (679)
.-..+|. .++++|+. ..+..|+..+..-+.+..+...+ .+.-+ -.+...+..+++-|..+ .
T Consensus 264 ~f~p~G~~~i~~s~rr-------ky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G---------~ 326 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRR-------KYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNG---------H 326 (514)
T ss_pred eecCCCceEEEecccc-------eEEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEcccCc---------e
Confidence 3333555 66667664 22334555444454554443333 22222 23345566777777643 3
Q ss_pred EEEEECCCCcEEe
Q 005755 84 VAVLDTAAGVWLD 96 (679)
Q Consensus 84 v~vyD~~t~~W~~ 96 (679)
++++...|++|..
T Consensus 327 I~lLhakT~eli~ 339 (514)
T KOG2055|consen 327 IHLLHAKTKELIT 339 (514)
T ss_pred EEeehhhhhhhhh
Confidence 8889999999954
No 195
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.65 E-value=7.6e+02 Score=24.57 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=62.0
Q ss_pred ccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCC----------------------
Q 005755 345 RFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST---------------------- 402 (679)
Q Consensus 345 ~~~l~~~~i~~L~~~~~~il~~ep~ll~l~~pi~ViGDIHG~~~dL~~l~~~~g~~~~---------------------- 402 (679)
...+++++|.+=|.+..+.+.++-.= ...++||=++|++--+-.++..+.++.+
T Consensus 9 evLisee~I~~ri~ela~~I~~~y~g----~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~ 84 (178)
T COG0634 9 EVLISEEQIKARIKELAAQITEDYGG----KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKIL 84 (178)
T ss_pred eEeeCHHHHHHHHHHHHHHHHHhhCC----CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEe
Confidence 45789999998888877766665322 5678999999999877777777666532
Q ss_pred ---CCCCceeeEEEeccccCCCCCcHHHHHHHHHHHHhcCCCeE
Q 005755 403 ---AGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVH 443 (679)
Q Consensus 403 ---~~~~~~~~~vFLGDyVDRG~~slevl~lL~~lk~~~P~~v~ 443 (679)
+.++...++|.+=|++|-|.-=-++..+|. .+-|..+.
T Consensus 85 kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~---~r~a~sv~ 125 (178)
T COG0634 85 KDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLK---ERGAKSVR 125 (178)
T ss_pred cccccCCCCCeEEEEecccccChhHHHHHHHHH---hCCCCeEE
Confidence 112223479999999998864444444443 34455543
Done!