Query 005757
Match_columns 679
No_of_seqs 255 out of 1105
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 13:19:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1162 Predicted small molecu 100.0 6E-120 1E-124 1000.6 48.6 555 1-679 1-585 (617)
2 PF03124 EXS: EXS family; Int 100.0 5.1E-67 1.1E-71 565.1 23.6 294 384-679 2-338 (345)
3 COG5409 EXS domain-containing 100.0 2.9E-51 6.3E-56 417.3 14.4 317 346-679 4-360 (384)
4 PF03105 SPX: SPX domain; Int 100.0 7.4E-32 1.6E-36 280.7 20.4 267 1-294 1-274 (275)
5 KOG1161 Protein involved in va 100.0 1E-31 2.2E-36 274.9 18.4 177 1-325 1-177 (310)
6 COG5036 SPX domain-containing 99.9 3.3E-24 7.1E-29 223.2 14.9 168 1-324 1-168 (509)
7 COG5408 SPX domain-containing 99.8 1.4E-19 3E-24 185.5 16.2 55 240-294 237-291 (296)
8 PF10777 YlaC: Inner membrane 54.8 87 0.0019 29.8 8.7 16 347-362 36-51 (155)
9 KOG4460 Nuclear pore complex, 39.9 5.7E+02 0.012 29.6 13.5 37 119-155 605-644 (741)
10 PF14193 DUF4315: Domain of un 38.1 95 0.0021 26.7 5.7 34 119-156 4-37 (83)
11 PF03904 DUF334: Domain of unk 27.4 6.9E+02 0.015 25.6 17.0 32 123-154 46-77 (230)
12 COG3872 Predicted metal-depend 24.4 6E+02 0.013 26.7 9.7 37 392-428 156-195 (318)
13 PF04568 IATP: Mitochondrial A 20.7 3.5E+02 0.0077 24.1 6.4 39 112-150 60-99 (100)
No 1
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-120 Score=1000.59 Aligned_cols=555 Identities=54% Similarity=0.895 Sum_probs=479.3
Q ss_pred CCchhHHhhhcchHHHHhcCChhhHHHHHHHHhhhhhcccCCCCccccccccccccchhhhhcccccccccccCCCCCCC
Q 005757 1 MKFGKEFEAQLVQEWREAYMDYNYLKTILKEILHFKQKHTASPMTATTKEGRSLKRKVSFYRAFSGLTNKYRSYSPRKYR 80 (679)
Q Consensus 1 MKFgk~L~~~~vPEWr~~YidYk~LKk~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (679)
|||||+|++|++|||+++||||+.|||+||++.+....
T Consensus 1 MKFgk~~~~q~~pEW~~ay~dY~~lK~~l~~i~~~~~~------------------------------------------ 38 (617)
T KOG1162|consen 1 MKFGKELESQLVPEWRQAYIDYKYLKKLLKEIIENKPS------------------------------------------ 38 (617)
T ss_pred CcchHHHHHhcCHHHHHHhhhHHHHHHHHHHHHhcCCC------------------------------------------
Confidence 99999999999999999999999999999999863211
Q ss_pred CCccchhhhccccCCCchhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005757 81 HEEDEAILVSSTVDEGDQYQTMFLMSSDEGGQFEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIALRIKI 160 (679)
Q Consensus 81 ~~e~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~r~~~ 160 (679)
. | ++++....++.++.|..||+.||.||+|||+||.+|++|+.+|.+.|++||+++.+.|.+-
T Consensus 39 ~-~----------------~t~~~~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~~ 101 (617)
T KOG1162|consen 39 S-E----------------ETTFLMVSEEGGEFEEVFFRRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALIALRVKS 101 (617)
T ss_pred c-C----------------ccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 0 0 1111222244568899999999999999999999999999999999999999998876420
Q ss_pred CCcchhhchhhhHHhhhhhcccCCCCCCCcccccCCcccchhhhhhhcccCCCCCCcccccccccccCcccccccHHHHH
Q 005757 161 DDPIKQQGQLHMEKIQELEMSSEGSSDGKTRADMNGFSRASLEVLDHVKLNVEPETPVSILKGVLMTSKSDRSFSRNELK 240 (679)
Q Consensus 161 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~~~~~~ 240 (679)
. ++.. .+. ++ ++ ....|+++ ++
T Consensus 102 ~------------------~~~~--------~~~---~~-------------------~~---------~~~~f~~~-~~ 123 (617)
T KOG1162|consen 102 R------------------SSVD--------ISD---RA-------------------AR---------LRGKFTKV-LR 123 (617)
T ss_pred c------------------cccc--------ccc---cc-------------------ch---------hhhhhhHH-HH
Confidence 0 0000 000 00 00 11225566 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHHHcccCCCCChHHHHHHHHHHHHHHHHHh
Q 005757 241 KAEALMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQMVDNSNLGSSDEVTKLMERVEATFVKHF 320 (679)
Q Consensus 241 ~a~~~Lk~a~~e~y~~l~~L~~f~~LN~tgf~KIlKK~DK~~~~~~~~~~~~~v~~~~f~~~~~l~~l~~~ve~ly~~~f 320 (679)
+++++||.|+.|+|+.|.+||+|+.||.|||+||+|||||.++++. ..|++.|+.++|.+++++++|+.+||++|+++|
T Consensus 124 ~~e~~lk~af~Efy~~L~llk~y~~lN~~~f~KI~KKyDK~~~~~~-~~~~~~v~~s~f~~~~~i~~l~~~Ve~~f~~~f 202 (617)
T KOG1162|consen 124 KAEEKLKLAFSEFYLKLRLLKNYQFLNVTAFRKILKKYDKITSRDA-KRYVKMVDKSYFTSSDEITRLMLEVEETFTKHF 202 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999988 889999999999999999999999999999999
Q ss_pred cCCChHhHhhhcCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhhhHHHHHHHHHHHH
Q 005757 321 ANGNHRKGMHTLRPKAKRERHTITFFLGTFFGFSLALIVAVVVAIHARNILESPGRTQYMENIFPLYSFFGYIILHMLMY 400 (679)
Q Consensus 321 ~~g~~~~a~~~Lr~~~~~~~~~~~F~~Gl~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~l~ 400 (679)
++|||++||+.||++ +++.|..+|.+|++.||++.+.++++++++.+++...+ +..|++.++|+|+ +++++++++++
T Consensus 203 an~nr~~~m~~lr~~-~~e~h~~~~~~~f~~g~~~~l~val~~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~v~l~~fl~ 279 (617)
T KOG1162|consen 203 ANGNRRKAMKVLRPK-LKEKHRPTFSTGFFVGCGIGLSVALVALIYLRNILQSE-QRFYMETMFPLYG-FGLVVLHKFLY 279 (617)
T ss_pred hCCChhHhhhhcCCc-ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHH-HHHHHHHHHHh
Confidence 999999999999999 88999999999999999999999998888888877765 7889999999998 89999999999
Q ss_pred HHHHHHHhhcCCCceeeecccCCCCcchhhHHHHHHHHHHHHHHHHHhhcccccCccCchhhHHHHH--------hhc--
Q 005757 401 AGDIYFWKRYRVNYSFIFGLKQGTELGYREVLLLSSGLAVLTFSCALSNLDMEMDPRTKSFRALTEV--------VPL-- 470 (679)
Q Consensus 401 ~~n~~iw~~~~INY~~IFe~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~~~l--------~pl-- 470 (679)
|+|+|+|+++||||+||||+++++++++++++++++..++++.++++.++++..++.+....|+..+ .|+
T Consensus 280 ~~niy~W~~~rVNy~fIf~~~~~~~l~~~~~l~i~~~~~~~~~l~~l~~l~~~~~~~~~~~~Pl~ll~~~~~~L~~Pf~~ 359 (617)
T KOG1162|consen 280 NVNIYEWSRTRVNYKFIFEFDQRTELGYRDILLIHNTNGILEFLPVLKNLDMSMSGQTTELSPLILLLLFFFLLVCPFNT 359 (617)
T ss_pred cCchHHHHHhcCCceeeecCCccccccHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcccchHHHHHHHHheeeccchh
Confidence 9999999999999999999999999999999999999999999999999888776654111121111 111
Q ss_pred -------------------cccceecCceehhhhhhhHHHhhhchhhhheeeecCCCCCCCCCCCCcchhhHHHHHHHhh
Q 005757 471 -------------------GLLIVTLPDFFLADQLTSQVQALRSLEFYVCYYGWGDFKRRSNNCNQSEIFQKFYVVIAII 531 (679)
Q Consensus 471 -------------------~l~~V~F~df~laDqltSl~~~l~d~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~l 531 (679)
++..|.|+|||+|||+||++.+++|+++++|+|++|+|..++ +|..++.+..+.++++++
T Consensus 360 fY~sSRf~ll~~l~rvi~spl~~V~~~DFfl~Dql~S~v~a~~~l~~~~C~y~~~~~~~~~-~~~~~~~~~~~~~iva~l 438 (617)
T KOG1162|consen 360 FYRSSRFWLLKRLFRVLSSPLYKVLFVDFFLADQLTSLVLALRDLEFFICYYGTGDFQARR-TCYCKDDYIEFQSIVAVL 438 (617)
T ss_pred hhHhhHHHHHHHHHHHHhccceeeccccccHHHHHHHHHHHHHhHHHhheeeccccccccc-ccccccchHHHHHHHHHH
Confidence 112299999999999999999999999999999999876554 666666666788999999
Q ss_pred hHHHHHHHHHHHhhhcCCccchhhhHHHHHHHHHHHHHHHHhccCCc-hHHHHHHHHHhhhhhhHHHHHHHhhhccccCC
Q 005757 532 PYWFRFLQCLRRLFEEQDRVHGLNALKYSSTIVAVATRTIYSLRAGK-TLLIVAAASSGVATIANTYWDIAIDWGLLRRN 610 (679)
Q Consensus 532 P~~~R~~QClrry~d~~~~~hl~Na~KY~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~s~ys~~WDv~mDWgL~~~~ 610 (679)
|+|+|++||+|||+|++..+|++||+||+++++++++..+|+...+. .|+++|++++.+||+|+++||++|||||+.++
T Consensus 439 P~~~RfLQClRR~~d~~~~~hL~NAlKY~~~i~~v~~~~~y~~~~~~~~~~~l~~~~s~vaS~y~~~WDvv~DWgLl~~~ 518 (617)
T KOG1162|consen 439 PYWFRFLQCLRRYRDEKAFPHLLNALKYSTTILAVMLTTLYRILPGSSLWFALWILSSKVASLYTTYWDVVMDWGLLNRK 518 (617)
T ss_pred HHHHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHheeccccccc
Confidence 99999999999999998899999999999999999999999988875 99999999999999999999999999999999
Q ss_pred CCCccccccccCCCCchhhhHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHHHhhcceecC
Q 005757 611 SRNPWLRDKLIVPIRSVYFIAMVLNILLRLAWMQTVLGFTEAPFLHRTALIAVVASLEIIRRGIWNFFR 679 (679)
Q Consensus 611 ~~~~~LR~~l~y~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~~~~~~~~~lEi~RR~iWn~fR 679 (679)
++ |+||++++||++|+||+||+.|++||++|++.++........ .+.++++++.+||+|||+|||||
T Consensus 519 ~~-~~lRd~l~~p~k~vYy~aiv~N~vLR~aW~~~~i~~~~~~~~-~~~~~~i~a~LEIiRRfiWnfFR 585 (617)
T KOG1162|consen 519 SK-PWLRDNLLYPQKWVYYSAIVLNFVLRFAWFFKTILVFHEEFL-SDSMVFIMALLEIIRRFIWNFFR 585 (617)
T ss_pred Cc-hhhHHHhcccchheehhHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhhhHHHH
Confidence 98 999999999999999999999999999998776532211222 67888999999999999999998
No 2
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=5.1e-67 Score=565.11 Aligned_cols=294 Identities=37% Similarity=0.672 Sum_probs=247.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeeecccCCCCcchhhHHHHHHHHHHHHHHHHHhhccccc---C-ccCc
Q 005757 384 FPLYSFFGYIILHMLMYAGDIYFWKRYRVNYSFIFGLKQGTELGYREVLLLSSGLAVLTFSCALSNLDMEM---D-PRTK 459 (679)
Q Consensus 384 ~pl~~~~~l~~l~~~l~~~n~~iw~~~~INY~~IFe~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~-~~~~ 459 (679)
+|+||+++++++++|+||+|+++|+++||||++|||+||++++++++++.+++.+++++.++++.++.... . +...
T Consensus 2 ~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 81 (345)
T PF03124_consen 2 PPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANW 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccch
Confidence 67899999999999999999999999999999999999999999999999988888877777666543211 1 1110
Q ss_pred ---hhhHHH--------HHhhc---------------------cccceecCceehhhhhhhHHHhhhchhhhheeeecCC
Q 005757 460 ---SFRALT--------EVVPL---------------------GLLIVTLPDFFLADQLTSQVQALRSLEFYVCYYGWGD 507 (679)
Q Consensus 460 ---~y~~~~--------~l~pl---------------------~l~~V~F~df~laDqltSl~~~l~d~~~~~c~~~~~~ 507 (679)
.+.|+. .+.|. ++..|+|+|||+||||||++++++|+++++|+|..+.
T Consensus 82 ~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~ 161 (345)
T PF03124_consen 82 YFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGS 161 (345)
T ss_pred hhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 011111 11232 1122999999999999999999999999999999866
Q ss_pred CCCCCCCCCCcchhhHHHHHHHhhhHHHHHHHHHHHhhhcCCc-cchhhhHHHHHHHHHHHHHHHHhccCCch----HHH
Q 005757 508 FKRRSNNCNQSEIFQKFYVVIAIIPYWFRFLQCLRRLFEEQDR-VHGLNALKYSSTIVAVATRTIYSLRAGKT----LLI 582 (679)
Q Consensus 508 ~~~~~~~c~~~~~~~~~~~~~~~lP~~~R~~QClrry~d~~~~-~hl~Na~KY~~~~~~~~~~~~~~~~~~~~----~~~ 582 (679)
..+.+++|++.+.+ ..|+++++|++||++||+|||+|+++. +||+||+||++++++++++..++.+++.. +..
T Consensus 162 ~~~~~~~c~~~~~~--~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (345)
T PF03124_consen 162 FTSPSNQCGSSSWY--IDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIWLFI 239 (345)
T ss_pred ccCCCCcCccccHh--HHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 55567899987654 248999999999999999999999998 99999999999998888888777665543 778
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhccccCC--CCCccccccccCCCCchhhhHHHHHHHHHHHHHHHhhhcCCCcchhhhHH
Q 005757 583 VAAASSGVATIANTYWDIAIDWGLLRRN--SRNPWLRDKLIVPIRSVYFIAMVLNILLRLAWMQTVLGFTEAPFLHRTAL 660 (679)
Q Consensus 583 ~~~~~~~i~s~ys~~WDv~mDWgL~~~~--~~~~~LR~~l~y~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~~~ 660 (679)
+|++++++||+||++|||+|||||++++ +++++||++++||+|++||+||+.|+++||+|++++.+.......+.+.+
T Consensus 240 ~w~~~~~i~s~Ys~~WDv~~DWgL~~~~~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~~~ 319 (345)
T PF03124_consen 240 LWIIFALINSLYSFYWDVKMDWGLFQPKKKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHIDNSEIF 319 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCccccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 8999999999999999999999999987 78999999999999999999999999999999999876431113357888
Q ss_pred HHHHHHHHHHHhhcceecC
Q 005757 661 IAVVASLEIIRRGIWNFFR 679 (679)
Q Consensus 661 ~~~~~~lEi~RR~iWn~fR 679 (679)
.++++++||+||++|||||
T Consensus 320 ~~~~~~lEi~RR~iWnffR 338 (345)
T PF03124_consen 320 IFILAILEIFRRFIWNFFR 338 (345)
T ss_pred HHHHHHHHHHHHHhhheee
Confidence 8999999999999999998
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-51 Score=417.27 Aligned_cols=317 Identities=27% Similarity=0.435 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCc-cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeeecccCCC
Q 005757 346 FLGTFFGFSLALIVAVVVAIHARNILESPGR-TQYMENIFPLYSFFGYIILHMLMYAGDIYFWKRYRVNYSFIFGLKQGT 424 (679)
Q Consensus 346 ~~Gl~~G~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~pl~~~~~l~~l~~~l~~~n~~iw~~~~INY~~IFe~~~~~ 424 (679)
++|+-.|.++++...+..+ ++...+ ......+.++|.++.+..+...++++|+|+|+|.+|||++||+++...
T Consensus 4 vv~~~~g~~l~l~~~i~~l------~~~~~~~~~~~~ill~lw~~~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~ 77 (384)
T COG5409 4 VVGLEKGVSLSLGLYIQNL------LNVGEPQSFIVLILLALWGGWILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLS 77 (384)
T ss_pred eeeeeccccccHHHHHHHh------eeCCchHHHHHHHHHHHHhHHHHHHHHHHHhcCceeeEEeccccchhhhhHhHhh
Confidence 3566666666554443322 232222 222456778888887877778899999999999999999999987653
Q ss_pred C----cchhhHHH-HH---HHHHHHHHHHHHh----hccc---------------ccCc------cCchhh--HHHHHhh
Q 005757 425 E----LGYREVLL-LS---SGLAVLTFSCALS----NLDM---------------EMDP------RTKSFR--ALTEVVP 469 (679)
Q Consensus 425 ~----l~~~~~~~-~~---~~~~~~~l~~~~~----~l~~---------------~~~~------~~~~y~--~~~~l~p 469 (679)
. ...+.-.. +. +..+.+...|... .+.. -+.| .++.|. .+.+++-
T Consensus 78 ~~a~~~~~dfh~~~i~~~~~~~slfiFl~~v~g~~~~l~~~~~~P~l~v~~vf~~ll~Pf~ii~y~sRr~Li~sliRv~l 157 (384)
T COG5409 78 STARNFNLDFHRIIIPFHFFTTSLFIFLNAVEGLKFILLFVYFLPLLQVGTVFWFLLKPFQIIYYWSRRYLIESLIRVFL 157 (384)
T ss_pred hhhcccchhhHHHhhhHHHHHHHHHHHHHHhhccccceehhhhccHHHHHHHHHHhhcccceeeecchhhHHHHHHHHHH
Confidence 3 22111110 00 0011111111100 0000 0001 011111 1122333
Q ss_pred ccccceecCceehhhhhhhHHHhhhchhhhheeeecCCCCCCCCCCCCcchhhHHHHHHHhhhHHHHHHHHHHHhhhcCC
Q 005757 470 LGLLIVTLPDFFLADQLTSQVQALRSLEFYVCYYGWGDFKRRSNNCNQSEIFQKFYVVIAIIPYWFRFLQCLRRLFEEQD 549 (679)
Q Consensus 470 l~l~~V~F~df~laDqltSl~~~l~d~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~lP~~~R~~QClrry~d~~~ 549 (679)
.+...|+|.||++||++||++++++|+..++|+|..- +. .+ -|.+++.. +.++++++|.++|++||+|||+|+++
T Consensus 158 ~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~~~-~~-~p-Lc~sshs~--~~g~~~~lP~ivR~lQCLRry~ds~~ 232 (384)
T COG5409 158 FGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYSLL-FR-EP-LCKSSHSD--LSGLAALLPVIVRFLQCLRRYRDSLH 232 (384)
T ss_pred hccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHhhh-cc-cc-ccccCCcc--hHhHHHhhHHHHHHHHHHHHHHhhhh
Confidence 3444599999999999999999999999999999742 11 12 58776643 56789999999999999999999987
Q ss_pred -ccchhhhHHHHHHHHHHHHHHHHhccC-CchHHHHHHHHHhhhhhhHHHHHHHhhhccccCCCC-CccccccccCCCCc
Q 005757 550 -RVHGLNALKYSSTIVAVATRTIYSLRA-GKTLLIVAAASSGVATIANTYWDIAIDWGLLRRNSR-NPWLRDKLIVPIRS 626 (679)
Q Consensus 550 -~~hl~Na~KY~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~s~ys~~WDv~mDWgL~~~~~~-~~~LR~~l~y~~~~ 626 (679)
.|||.||+||++++.+.....+|+..+ +...++++++++.+||+||+.|||+|||++..+.++ ++-.|++++++
T Consensus 233 ~fphLlNALKYs~~i~v~~~~~~~r~~~~~~~l~~l~~~~a~lnS~yT~~WDV~mDW~l~~~~~~~~~~kr~~~~l~--- 309 (384)
T COG5409 233 EFPHLLNALKYSLNIPVLFCLWLYRVYEGEERLFHLQIWFALLNSIYTSFWDVFMDWSLDSLTSLRSWSKRAVTLLK--- 309 (384)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHhccCcceeehHHHHHHHHHHHHHHhHHhheeeeecccccchhccccchhHHH---
Confidence 499999999999997777778888776 456778889999999999999999999999876654 46678877754
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCcchh-hhHHHHHHHHHHHHHhhcceecC
Q 005757 627 VYFIAMVLNILLRLAWMQTVLGFTEAPFLH-RTALIAVVASLEIIRRGIWNFFR 679 (679)
Q Consensus 627 ~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~-~~~~~~~~~~lEi~RR~iWn~fR 679 (679)
|++||+.|+++|++|+++..+.. ...+ .+...++++++||+|||+|++||
T Consensus 310 -y~~a~~inFllR~~Wi~~~~~~~--~~~~~~~~~~F~m~~lEi~RR~vW~~Fr 360 (384)
T COG5409 310 -YHIAMIINFLLRFSWIVYYLPPN--HIQHSADIFIFIMQLLEILRRFVWVFFR 360 (384)
T ss_pred -HHHHHHHHHHHHHHHHHhhcchh--hhhhhhhhHHHHHHHHHHHHhheeeEEE
Confidence 99999999999999999986432 2333 33333789999999999999998
No 4
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=100.00 E-value=7.4e-32 Score=280.73 Aligned_cols=267 Identities=30% Similarity=0.396 Sum_probs=142.5
Q ss_pred CCchhHHhhhcchHHHHhcCChhhHHHHHHHHhhhhhcccCCCCccccccccccccchhhhhcccccccccccCCCCCCC
Q 005757 1 MKFGKEFEAQLVQEWREAYMDYNYLKTILKEILHFKQKHTASPMTATTKEGRSLKRKVSFYRAFSGLTNKYRSYSPRKYR 80 (679)
Q Consensus 1 MKFgk~L~~~~vPEWr~~YidYk~LKk~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (679)
|||||+|+.++||||+++|||||.|||+||+++.............. ......+ . .+...+....
T Consensus 1 MKFgk~L~~~~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~-----~~~~~~~--~--------~~~~~~~~~~ 65 (275)
T PF03105_consen 1 MKFGKQLQENAVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLS-----SISISSS--S--------SSSSRSSSNS 65 (275)
T ss_pred CCchHHHHHhcCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccc-----hhhhhhh--h--------hccccccccc
Confidence 99999999999999999999999999999999886554321111000 0000000 0 0000000000
Q ss_pred CCccchhhhccccCCCchhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005757 81 HEEDEAILVSSTVDEGDQYQTMFLMSSDEGGQFEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIALRIKI 160 (679)
Q Consensus 81 ~~e~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~r~~~ 160 (679)
.....+-. .......... .......+.+.+|+..|+.||+||+.||.++++|+.++++.|+.|++.+...+...
T Consensus 66 ~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~ 139 (275)
T PF03105_consen 66 FESTSPSS-SNTSPSSSNS-----EQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKS 139 (275)
T ss_pred cccccccc-cccccccccc-----chhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 00000000 0000000000 00011235788999999999999999999999999999999999999997764422
Q ss_pred CCcchhhchhhhHHhhhhhcccCCCCCC-Ccccc-----cCCcccchhhhhhhcccCCCCCCcccc-cccccccCccccc
Q 005757 161 DDPIKQQGQLHMEKIQELEMSSEGSSDG-KTRAD-----MNGFSRASLEVLDHVKLNVEPETPVSI-LKGVLMTSKSDRS 233 (679)
Q Consensus 161 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~ 233 (679)
...... + ........+.. ...+++. ..+.. .+...... ....... +.....+... ............
T Consensus 140 ~~~~~~-~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 213 (275)
T PF03105_consen 140 SDKYNW-N-QSSQLSSSSNI-FSSSSSASAGSSNSSSASRRSQRFSS-ESSKQSS-NSESDAESDNNRGDRSSDKPFLS- 213 (275)
T ss_pred cccccc-c-cchhhcccccc-ccCccccccCCccccccccccccchh-hhhhccC-CCCcccccccccccccccccccc-
Confidence 100000 0 00000000000 0000000 00000 00000000 0000000 0000000000 000000000111
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHHHc
Q 005757 234 FSRNELKKAEALMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQMV 294 (679)
Q Consensus 234 f~~~~~~~a~~~Lk~a~~e~y~~l~~L~~f~~LN~tgf~KIlKK~DK~~~~~~~~~~~~~v 294 (679)
.....+.+++..|++++.|+|++|.+|++|++||+|||+||||||||++++++++.||+.|
T Consensus 214 ~~~~~~~~~~~~l~~~~~e~y~~l~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v 274 (275)
T PF03105_consen 214 SSQKSLKKARKQLKKAFIELYRELELLKSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEV 274 (275)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhhcc
Confidence 3345667788999999999999999999999999999999999999999999999999864
No 5
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1e-31 Score=274.93 Aligned_cols=177 Identities=25% Similarity=0.398 Sum_probs=149.7
Q ss_pred CCchhHHhhhcchHHHHhcCChhhHHHHHHHHhhhhhcccCCCCccccccccccccchhhhhcccccccccccCCCCCCC
Q 005757 1 MKFGKEFEAQLVQEWREAYMDYNYLKTILKEILHFKQKHTASPMTATTKEGRSLKRKVSFYRAFSGLTNKYRSYSPRKYR 80 (679)
Q Consensus 1 MKFgk~L~~~~vPEWr~~YidYk~LKk~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (679)
|||||+|++..+|||+++|||||.|||.||+....... + +
T Consensus 1 MkFGk~L~~~~l~ew~~~yinYk~LKK~lK~~~~~~~~---------------------------------------~-~ 40 (310)
T KOG1161|consen 1 MKFGKYLKEELLPEWKDKYINYKELKKLLKQYSIQTAD---------------------------------------S-S 40 (310)
T ss_pred CchhHHHHHhhhhhHhhhhcCHHHHHHHHHHhcccccc---------------------------------------C-C
Confidence 99999999999999999999999999999987431000 0 0
Q ss_pred CCccchhhhccccCCCchhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005757 81 HEEDEAILVSSTVDEGDQYQTMFLMSSDEGGQFEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIALRIKI 160 (679)
Q Consensus 81 ~~e~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~r~~~ 160 (679)
. + ...|..|++.||+||+||+.|+.+|++|+.+|+++|++|.++ ..
T Consensus 41 ~-------------~---------------~~~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~--~~---- 86 (310)
T KOG1161|consen 41 P-------------D---------------SRDESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA--LS---- 86 (310)
T ss_pred c-------------c---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cc----
Confidence 0 0 125889999999999999999999999999999999998865 10
Q ss_pred CCcchhhchhhhHHhhhhhcccCCCCCCCcccccCCcccchhhhhhhcccCCCCCCcccccccccccCcccccccHHHHH
Q 005757 161 DDPIKQQGQLHMEKIQELEMSSEGSSDGKTRADMNGFSRASLEVLDHVKLNVEPETPVSILKGVLMTSKSDRSFSRNELK 240 (679)
Q Consensus 161 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~~~~~~ 240 (679)
.++ |. ...
T Consensus 87 ~~~-----------------------------------------------------~~------------~~~------- 94 (310)
T KOG1161|consen 87 LEP-----------------------------------------------------PS------------AEE------- 94 (310)
T ss_pred cCC-----------------------------------------------------cc------------hhH-------
Confidence 000 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHHHcccCCCCChHHHHHHHHHHHHHHHHHh
Q 005757 241 KAEALMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQMVDNSNLGSSDEVTKLMERVEATFVKHF 320 (679)
Q Consensus 241 ~a~~~Lk~a~~e~y~~l~~L~~f~~LN~tgf~KIlKK~DK~~~~~~~~~~~~~v~~~~f~~~~~l~~l~~~ve~ly~~~f 320 (679)
+ ..|++++.++..++.+|.+|++||+|||+||||||||.+|...+..|..+|..+||++.+.+++|+.+++.+|+..+
T Consensus 95 -~-~~lr~~l~~~~~em~~L~~fs~LN~tGf~KILKK~DKrtg~~l~~~f~~~l~~~Pf~~~e~~~~Lv~e~~~l~~~l~ 172 (310)
T KOG1161|consen 95 -M-KELREELVDFHGEMVLLENFSRLNYTGFAKILKKHDKRTGYRLRPYFQVRLLHQPFFTTEQLFRLVYEISILLDLLR 172 (310)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccccccHHHHHHHhCCCchhhhHHHHHHHHHHHHHHhc
Confidence 1 57889999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred cCCCh
Q 005757 321 ANGNH 325 (679)
Q Consensus 321 ~~g~~ 325 (679)
..++.
T Consensus 173 ~~~~~ 177 (310)
T KOG1161|consen 173 PSNRN 177 (310)
T ss_pred ccccc
Confidence 87754
No 6
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.3e-24 Score=223.25 Aligned_cols=168 Identities=24% Similarity=0.338 Sum_probs=139.6
Q ss_pred CCchhHHhhhcchHHHHhcCChhhHHHHHHHHhhhhhcccCCCCccccccccccccchhhhhcccccccccccCCCCCCC
Q 005757 1 MKFGKEFEAQLVQEWREAYMDYNYLKTILKEILHFKQKHTASPMTATTKEGRSLKRKVSFYRAFSGLTNKYRSYSPRKYR 80 (679)
Q Consensus 1 MKFgk~L~~~~vPEWr~~YidYk~LKk~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (679)
|+||+.|+++.+|+|++.||||..|||.+|+-.. + ++|
T Consensus 1 M~Fg~~L~~~ly~p~k~~YinYe~LK~~lK~~~~---~---------------------------------------~~w 38 (509)
T COG5036 1 MRFGKKLKNNLYPPYKYSYINYENLKKLLKESEE---E---------------------------------------GSW 38 (509)
T ss_pred CchhHHHHhccCcccccccCCHHHHHHHHhhccc---c---------------------------------------CCC
Confidence 9999999999999999999999999999998211 0 113
Q ss_pred CCccchhhhccccCCCchhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005757 81 HEEDEAILVSSTVDEGDQYQTMFLMSSDEGGQFEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIALRIKI 160 (679)
Q Consensus 81 ~~e~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~r~~~ 160 (679)
+ .++|++|++.||.||+||..|...|.+|+.+|+++|++|..+....
T Consensus 39 ~-----------------------------e~dEsdFVe~Ld~eLeKVY~F~~~k~~ev~erl~~leeq~~~~i~~---- 85 (509)
T COG5036 39 S-----------------------------ESDESDFVEELDKELEKVYGFQLSKYSEVMERLRTLEEQTDEAIQE---- 85 (509)
T ss_pred c-----------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhc----
Confidence 3 1568999999999999999999999999999999999999743211
Q ss_pred CCcchhhchhhhHHhhhhhcccCCCCCCCcccccCCcccchhhhhhhcccCCCCCCcccccccccccCcccccccHHHHH
Q 005757 161 DDPIKQQGQLHMEKIQELEMSSEGSSDGKTRADMNGFSRASLEVLDHVKLNVEPETPVSILKGVLMTSKSDRSFSRNELK 240 (679)
Q Consensus 161 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~~~~~~ 240 (679)
-++ ..+
T Consensus 86 -----------------~ds---------------------------------------------------~~~------ 91 (509)
T COG5036 86 -----------------LDS---------------------------------------------------DNF------ 91 (509)
T ss_pred -----------------ccC---------------------------------------------------Ccc------
Confidence 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHHHcccCCCCChHHHHHHHHHHHHHHHHHh
Q 005757 241 KAEALMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQMVDNSNLGSSDEVTKLMERVEATFVKHF 320 (679)
Q Consensus 241 ~a~~~Lk~a~~e~y~~l~~L~~f~~LN~tgf~KIlKK~DK~~~~~~~~~~~~~v~~~~f~~~~~l~~l~~~ve~ly~~~f 320 (679)
.+.+.|...+.+.|.+|.+||+|||.||+|||||.+|..+.+.|-.++...||+ ++.++.|+.+++.||....
T Consensus 92 ------~~~LeE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~~y~lkpvfqvrLk~~p~~-se~yd~Ll~kis~LY~~lR 164 (509)
T COG5036 92 ------PKILEEELDTVHDLAKFSRLNFTGFKKIVKKHDKHTGYSLKPVFQVRLKAKPFF-SEQYDPLLYKISSLYNILR 164 (509)
T ss_pred ------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCCceechhHHHHhccCCcc-hhhhcHHHHHHHHHHHHHH
Confidence 013344445889999999999999999999999999999999998889888985 5999999999999999999
Q ss_pred cCCC
Q 005757 321 ANGN 324 (679)
Q Consensus 321 ~~g~ 324 (679)
++++
T Consensus 165 ~~~~ 168 (509)
T COG5036 165 SSLS 168 (509)
T ss_pred hcCC
Confidence 9887
No 7
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.82 E-value=1.4e-19 Score=185.54 Aligned_cols=55 Identities=36% Similarity=0.563 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHHHc
Q 005757 240 KKAEALMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQMV 294 (679)
Q Consensus 240 ~~a~~~Lk~a~~e~y~~l~~L~~f~~LN~tgf~KIlKK~DK~~~~~~~~~~~~~v 294 (679)
...+..|+++++++|..|+.|++|++||+|||+||+|||||.+++++...||+..
T Consensus 237 ~q~R~~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~ 291 (296)
T COG5408 237 YQKRSLLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRS 291 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 3456799999999999999999999999999999999999999999999999763
No 8
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=54.85 E-value=87 Score=29.83 Aligned_cols=16 Identities=6% Similarity=-0.035 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 005757 347 LGTFFGFSLALIVAVV 362 (679)
Q Consensus 347 ~Gl~~G~~~~l~~~~~ 362 (679)
-|+++|+.++-+..++
T Consensus 36 P~L~~~M~~~y~~~~~ 51 (155)
T PF10777_consen 36 PYLCLAMYAAYLAVAA 51 (155)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3777776665443333
No 9
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.85 E-value=5.7e+02 Score=29.61 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=27.0
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005757 119 RRLDDEFNKV---VSFYKKKVEEAVAEADELSKQMNALIA 155 (679)
Q Consensus 119 ~~Ld~EL~KV---~~Fy~~k~~E~~~r~~~L~~ql~~l~~ 155 (679)
..+++|.++| ..|-.++.+|+.++-+.|+..+++|..
T Consensus 605 ~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~ 644 (741)
T KOG4460|consen 605 SYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLH 644 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4555665555 457778888888888888888887753
No 10
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=38.12 E-value=95 Score=26.71 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005757 119 RRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIAL 156 (679)
Q Consensus 119 ~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~ 156 (679)
..+++|++|+. .|.+|+..|+..|+.|..++.+.
T Consensus 4 eKi~~eieK~k----~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 4 EKIRAEIEKTK----EKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999986 89999999999999998887654
No 11
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=27.44 E-value=6.9e+02 Score=25.64 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005757 123 DEFNKVVSFYKKKVEEAVAEADELSKQMNALI 154 (679)
Q Consensus 123 ~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~ 154 (679)
.||++=++|-.....|+.++.+..+++++++.
T Consensus 46 ~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ 77 (230)
T PF03904_consen 46 QELKRQNKLIIKYLSEIEEKQDIREKNLKEIK 77 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777777777777777766653
No 12
>COG3872 Predicted metal-dependent enzyme [General function prediction only]
Probab=24.38 E-value=6e+02 Score=26.66 Aligned_cols=37 Identities=11% Similarity=-0.018 Sum_probs=24.1
Q ss_pred HHHHHHHHHHH---HHHHHhhcCCCceeeecccCCCCcch
Q 005757 392 YIILHMLMYAG---DIYFWKRYRVNYSFIFGLKQGTELGY 428 (679)
Q Consensus 392 l~~l~~~l~~~---n~~iw~~~~INY~~IFe~~~~~~l~~ 428 (679)
+++.|+|..+. =--+++.+|--|+-|+--..+.+|+.
T Consensus 156 lfl~YI~~Is~~~~IkRVFQYHGAEHk~I~~YE~~leLTp 195 (318)
T COG3872 156 LFLGYIWIISFTPDIKRVFQYHGAEHKVINCYENGLELTP 195 (318)
T ss_pred HHHHHHHHHhccHHHHHHHHhcCccceeEeeeccCCcCCh
Confidence 33444444332 23589999999999987666666654
No 13
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.70 E-value=3.5e+02 Score=24.10 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=20.6
Q ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005757 112 QFEVVFFRRLD-DEFNKVVSFYKKKVEEAVAEADELSKQM 150 (679)
Q Consensus 112 ~~e~~Ff~~Ld-~EL~KV~~Fy~~k~~E~~~r~~~L~~ql 150 (679)
..|+.||...+ ++|+++..=..++.+.-.+++++|++++
T Consensus 60 A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 60 AQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44666766555 4455555444444444555555555544
Done!