Query 005757
Match_columns 679
No_of_seqs 255 out of 1105
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pp5_A BRK1, protein brick1; t 42.6 94 0.0032 24.9 7.3 41 114-154 18-58 (73)
2 2akf_A Coronin-1A; coiled coil 41.4 66 0.0023 20.9 5.0 28 120-151 3-30 (32)
3 3p8c_E Probable protein brick1 40.2 1.1E+02 0.0037 24.7 7.3 41 114-154 18-58 (75)
4 2l2r_A Antimicrobial peptide e 36.3 11 0.00037 25.5 0.8 10 538-547 9-18 (37)
5 2l5g_B Putative uncharacterize 24.6 1.3E+02 0.0043 21.4 4.6 27 116-146 9-35 (42)
6 4ev6_A Magnesium transport pro 22.9 6E+02 0.021 25.7 13.2 32 249-280 198-229 (339)
7 2iub_A CORA, divalent cation t 19.5 5.7E+02 0.02 26.2 11.0 29 248-276 221-249 (363)
8 2pnv_A Small conductance calci 17.9 1.6E+02 0.0055 21.1 4.1 23 133-155 15-37 (43)
9 2p2u_A HOST-nuclease inhibitor 16.4 2.5E+02 0.0087 26.0 6.5 41 116-156 34-74 (171)
10 3t98_B Nucleoporin NUP58/NUP45 15.8 4.8E+02 0.017 21.7 10.7 28 129-156 7-34 (93)
No 1
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=42.64 E-value=94 Score=24.88 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005757 114 EVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALI 154 (679)
Q Consensus 114 e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~ 154 (679)
..+|.+.+...+.|+.+|-..=..-+..|+..++.+|+.+.
T Consensus 18 nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE 58 (73)
T 3pp5_A 18 QREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILD 58 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999888876655555555555555555543
No 2
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=41.43 E-value=66 Score=20.91 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005757 120 RLDDEFNKVVSFYKKKVEEAVAEADELSKQMN 151 (679)
Q Consensus 120 ~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~ 151 (679)
.|++|+.|++.-.+ ++.+|++.|+.-++
T Consensus 3 rlee~~r~l~~ivq----~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQ----KLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 57788888877654 56667777776554
No 3
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=40.17 E-value=1.1e+02 Score=24.70 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005757 114 EVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALI 154 (679)
Q Consensus 114 e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~ 154 (679)
..+|.+.+..-+.++.+|-..=..-+..|+..|+.+|+.+.
T Consensus 18 nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LE 58 (75)
T 3p8c_E 18 NREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALE 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999888876655555555555555555543
No 4
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=36.28 E-value=11 Score=25.50 Aligned_cols=10 Identities=50% Similarity=0.826 Sum_probs=8.6
Q ss_pred HHHHHHhhhc
Q 005757 538 LQCLRRLFEE 547 (679)
Q Consensus 538 ~QClrry~d~ 547 (679)
.||+|||.|.
T Consensus 9 rqC~Rr~ede 18 (37)
T 2l2r_A 9 SQCMRRHEDE 18 (37)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHhccCC
Confidence 5999999885
No 5
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.59 E-value=1.3e+02 Score=21.42 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005757 116 VFFRRLDDEFNKVVSFYKKKVEEAVAEADEL 146 (679)
Q Consensus 116 ~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L 146 (679)
+=...+|+|++|+. +|..++..|+..|
T Consensus 9 qkI~kVdrEI~Kte----~kI~~lqkKlkeL 35 (42)
T 2l5g_B 9 QNMDRVDREITMVE----QQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34567788888764 3444444443333
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=22.94 E-value=6e+02 Score=25.72 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhh
Q 005757 249 AFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDK 280 (679)
Q Consensus 249 a~~e~y~~l~~L~~f~~LN~tgf~KIlKK~DK 280 (679)
.+.++-+++..|++...-|.....++.+....
T Consensus 198 ~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~ 229 (339)
T 4ev6_A 198 KILGLRKTLVYFHKSLIANRDVLVLLKRKYLP 229 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBT
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Confidence 34455555666666666677777777665433
No 7
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=19.48 E-value=5.7e+02 Score=26.22 Aligned_cols=29 Identities=10% Similarity=0.120 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHH
Q 005757 248 RAFVEFYQKLRLLKSYCFLNQLAFSKIMK 276 (679)
Q Consensus 248 ~a~~e~y~~l~~L~~f~~LN~tgf~KIlK 276 (679)
+.+.++-+++..|++...-+...+.++.+
T Consensus 221 ~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 249 (363)
T 2iub_A 221 QRTHQLKRNLVELRKTIWPLREVLSSLYR 249 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566667777777777788888888775
No 8
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=17.94 E-value=1.6e+02 Score=21.07 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005757 133 KKKVEEAVAEADELSKQMNALIA 155 (679)
Q Consensus 133 ~~k~~E~~~r~~~L~~ql~~l~~ 155 (679)
....+++.+|+..|+.+|+.+..
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777654
No 9
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=16.36 E-value=2.5e+02 Score=25.97 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005757 116 VFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIAL 156 (679)
Q Consensus 116 ~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~ 156 (679)
+=-..++.|+++|...|....+.+..+++.|+..++.+...
T Consensus 34 ~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~ 74 (171)
T 2p2u_A 34 EIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATL 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468899999999999999999999999999999998764
No 10
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=15.82 E-value=4.8e+02 Score=21.66 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005757 129 VSFYKKKVEEAVAEADELSKQMNALIAL 156 (679)
Q Consensus 129 ~~Fy~~k~~E~~~r~~~L~~ql~~l~~~ 156 (679)
..||.+..+++.+++..++.+++.+..+
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~ 34 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENH 34 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777788888888888888887654
Done!