Query 005757
Match_columns 679
No_of_seqs 255 out of 1105
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 06:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005757.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005757hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 10.2 78 0.0057 25.8 3.0 31 306-336 4-34 (129)
2 d1tuba2 d.79.2.1 (A:246-440) T 8.5 69 0.005 28.0 2.1 29 271-299 143-173 (195)
3 d1khba1 c.91.1.1 (A:260-622) C 7.8 1.5E+02 0.011 28.6 4.3 33 119-151 324-361 (363)
4 d1tubb2 d.79.2.1 (B:246-437) T 6.8 1.1E+02 0.008 26.3 2.6 29 271-299 135-165 (184)
5 d1nu9c1 a.8.6.1 (C:1-145) Stap 6.4 4E+02 0.029 21.7 5.7 30 233-262 112-141 (145)
6 d2e74h1 f.23.27.1 (H:3-29) Pet 6.0 2.7E+02 0.019 15.8 3.2 17 395-411 10-26 (27)
7 d1ug3a1 a.118.1.14 (A:1235-142 5.7 2E+02 0.015 24.7 3.8 31 306-336 7-37 (193)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 5.4 4E+02 0.029 20.7 5.4 23 12-34 24-46 (133)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 5.3 3.5E+02 0.025 16.7 3.5 16 346-361 14-29 (37)
10 d1lvfa_ a.47.2.1 (A:) Syntaxin 5.2 6E+02 0.044 19.1 6.3 37 119-155 9-63 (106)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.18 E-value=78 Score=25.80 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCCChHhHhhhcCCcc
Q 005757 306 TKLMERVEATFVKHFANGNHRKGMHTLRPKA 336 (679)
Q Consensus 306 ~~l~~~ve~ly~~~f~~g~~~~a~~~Lr~~~ 336 (679)
+.|.++++.+...+|.+||.++|...++...
T Consensus 4 ~~l~kk~~~ll~EY~~~~D~~Ea~~~l~eL~ 34 (129)
T d2nsza1 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4678899999999999999999888877543
No 2
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=8.51 E-value=69 Score=28.05 Aligned_cols=29 Identities=10% Similarity=0.365 Sum_probs=18.8
Q ss_pred HHHHHHhhhhcCCC-cchHHHHHH-cccCCC
Q 005757 271 FSKIMKKYDKITSR-NASKAYLQM-VDNSNL 299 (679)
Q Consensus 271 f~KIlKK~DK~~~~-~~~~~~~~~-v~~~~f 299 (679)
|.+|++||||.... ..-+.|.+. ++..-|
T Consensus 143 f~~i~~~Fdkl~~rkAflh~Y~~egmee~eF 173 (195)
T d1tuba2 143 WARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 173 (195)
T ss_dssp HHHHHHHHHHHTTTTCCTTTGGGGSCCSSSS
T ss_pred HHHHHHHHHHHHhhchHHHHhcccCCcHHHH
Confidence 56778999998764 345667643 555444
No 3
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.78 E-value=1.5e+02 Score=28.59 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 005757 119 RRLDDEFNKVVSFYKKKVE-----EAVAEADELSKQMN 151 (679)
Q Consensus 119 ~~Ld~EL~KV~~Fy~~k~~-----E~~~r~~~L~~ql~ 151 (679)
+...+|++.+.++|.++.. |+.++++.|+++|+
T Consensus 324 ~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~ 361 (363)
T d1khba1 324 EFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRIS 361 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 4567899999999976653 67776666666664
No 4
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=6.82 E-value=1.1e+02 Score=26.31 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=19.9
Q ss_pred HHHHHHhhhhcCCC-cchHHHHH-HcccCCC
Q 005757 271 FSKIMKKYDKITSR-NASKAYLQ-MVDNSNL 299 (679)
Q Consensus 271 f~KIlKK~DK~~~~-~~~~~~~~-~v~~~~f 299 (679)
|.+|++||||.... ..-+.|.+ .++..-|
T Consensus 135 f~~~~~~fd~l~~kkAflh~Y~~egmee~eF 165 (184)
T d1tubb2 135 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 165 (184)
T ss_dssp HHTHHHHHHHTCCCCCCCHHHHTSSCCSTTT
T ss_pred HHHHHHHHHHHHhcChhHHhhccCCCcHHhH
Confidence 56788999999875 45677875 3554433
No 5
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=6.41 E-value=4e+02 Score=21.71 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=24.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005757 233 SFSRNELKKAEALMTRAFVEFYQKLRLLKS 262 (679)
Q Consensus 233 ~f~~~~~~~a~~~Lk~a~~e~y~~l~~L~~ 262 (679)
.+..+++......|+.|+-+|..++..+++
T Consensus 112 ~LTm~EyN~I~~sLk~Ave~F~kEVk~Iq~ 141 (145)
T d1nu9c1 112 DLTMREYNELTESLKSAVKDFEKDVEIIEN 141 (145)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567788889999999999999988775
No 6
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.96 E-value=2.7e+02 Score=15.82 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhcC
Q 005757 395 LHMLMYAGDIYFWKRYR 411 (679)
Q Consensus 395 l~~~l~~~n~~iw~~~~ 411 (679)
+..+-|++.+-+|-+.|
T Consensus 10 lvvftwsiamvvwgrng 26 (27)
T d2e74h1 10 LVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHhhheeeeEEEccCC
Confidence 44556788888898876
No 7
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.74 E-value=2e+02 Score=24.69 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcCCChHhHhhhcCCcc
Q 005757 306 TKLMERVEATFVKHFANGNHRKGMHTLRPKA 336 (679)
Q Consensus 306 ~~l~~~ve~ly~~~f~~g~~~~a~~~Lr~~~ 336 (679)
+++.++++.+...+|..||.++|...++...
T Consensus 7 ee~~kk~~~il~Ey~~~~D~~Ea~~~l~el~ 37 (193)
T d1ug3a1 7 EELEKKSKAIIEEYLHLNDMKEAVQCVQELA 37 (193)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566788899999999999999999888654
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.38 E-value=4e+02 Score=20.75 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=16.1
Q ss_pred chHHHHhcCChhhHHHHHHHHhh
Q 005757 12 VQEWREAYMDYNYLKTILKEILH 34 (679)
Q Consensus 12 vPEWr~~YidYk~LKk~Ik~~~~ 34 (679)
+..|...--+|..++..|+.+..
T Consensus 24 i~~l~~~~~e~~~~~~~L~~l~~ 46 (133)
T d1fxkc_ 24 MEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55666666677788888877753
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.32 E-value=3.5e+02 Score=16.72 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 005757 346 FLGTFFGFSLALIVAV 361 (679)
Q Consensus 346 ~~Gl~~G~~~~l~~~~ 361 (679)
+.+++.|..++...++
T Consensus 14 rtsLy~GlLlifvl~v 29 (37)
T d2axtl1 14 RTSLYLGLLLILVLAL 29 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5667777655444443
No 10
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.24 E-value=6e+02 Score=19.14 Aligned_cols=37 Identities=8% Similarity=0.197 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Q 005757 119 RRLDDEFNKVVSFYKK------------------KVEEAVAEADELSKQMNALIA 155 (679)
Q Consensus 119 ~~Ld~EL~KV~~Fy~~------------------k~~E~~~r~~~L~~ql~~l~~ 155 (679)
..+...++++...|.. ...|+...+..++.||+.|..
T Consensus 9 ~EVq~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~ 63 (106)
T d1lvfa_ 9 GEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDE 63 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556666666655554 356777777778888887754
Done!