BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005758
(678 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375 OS=Arabidopsis thaliana
GN=At4g18375 PE=2 SV=1
Length = 606
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 176/662 (26%), Positives = 298/662 (45%), Gaps = 109/662 (16%)
Query: 54 NNNTSINNSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWIN 113
NN+ S N R + + + +V YRILC GGVIGKSG +I +IR +T A I
Sbjct: 13 NNSESNRNQKRRISHDKINRDELVV--YRILCPIDVVGGVIGKSGKVINAIRHNTKAKIK 70
Query: 114 VHELIPGDEERIIEI--SDTRRRDPEGRMPS----FSPAQEALFLIHDRILESDGGGGFY 167
V + + G +R+I I S +++ G S AQ+AL ++D I+ SD
Sbjct: 71 VFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASD------ 124
Query: 168 GEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI 227
EE V + R++V L+GK G+ I+++R T+ +++
Sbjct: 125 ----EENNTKTNVDRDDNK------ECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKV 174
Query: 228 LPRDHSLPR--CVSMSEEIVQVVGDINNVKNAVAIISSRLRESQHRDR------------ 273
+ +D S P C + +V + G+ +VK A+ +S+ + + R+
Sbjct: 175 VSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINPRENIPLDSTSQDVPA 234
Query: 274 ------SHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGAR----FSGSNYRSNNYGPR 323
S ++ F+ + D++ + A PS A F G Y P
Sbjct: 235 ASVIVPSDLSNSVYPQTGFYSNQDHI--LQQGAGVPSYFNALSVSDFQG--YAETAANPV 290
Query: 324 PSGYSIEAGAAPMSDSVQPFYG----EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGV 379
P + A + P++ F G E+LVF++LCP+ + RVIG+ ++ ++ G
Sbjct: 291 P----VFASSLPVT---HGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGS 343
Query: 380 DLKVADPVD--GSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLL 437
++V D G DE +I +++ E PDD A EA+L +Q I D A+ + +LL
Sbjct: 344 CIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYINDEDAEN---VKMQLL 400
Query: 438 VPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSG--TDELVQIVGEIQAARD 494
V S IGC+ G+ GS ++E+R+ T ANI C+S D+LV++ GE+ + RD
Sbjct: 401 VSSKVIGCVIGKSGSVINEIRKRTNANI----------CISKGKKDDLVEVSGEVSSVRD 450
Query: 495 ALVEVTTRLRSYLY--RDFFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDPPA 552
AL+++ RLR + +D PP+ T + + +S T + ++ +
Sbjct: 451 ALIQIVLRLREDVLGDKDSVATRKPPAR---TDNCSFLSGSSNAGYTLPSFMSSMAS-TS 506
Query: 553 ATHQSVQIPATSQPSKEAAGSVSETVKQNESERREDVPTVINRVPLPLVTRSTLEVVLPD 612
H PA GS P R+P + S LE+++P
Sbjct: 507 GFHGYGSFPA----GDNVLGSTG--------------PYSYGRLP----SSSALEILIPA 544
Query: 613 YAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFIL 672
+A+ K++ K L +SGA + + + I +SGT EQ+ A++++Q F++
Sbjct: 545 HAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENLVQAFVM 604
Query: 673 ST 674
ST
Sbjct: 605 ST 606
>sp|O42254|IF2B1_CHICK Insulin-like growth factor 2 mRNA-binding protein 1 OS=Gallus
gallus GN=IGF2BP1 PE=1 SV=1
Length = 576
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 105/434 (24%), Positives = 179/434 (41%), Gaps = 79/434 (18%)
Query: 77 VTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH-ELIPGDEERIIEISDTRRRD 135
V R+L G +IGK G+ I++I + T + I+VH + G E+ I I T
Sbjct: 194 VDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHST---- 249
Query: 136 PEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATR 195
PEG A +I + I++ + +E V +
Sbjct: 250 PEG-------CSAACKMILE-IMQKEAKDTKTADE---------------------VPLK 280
Query: 196 MVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNV 254
++ VG L+GK G+ ++++ +T+T+I I +D +L E + V G I N
Sbjct: 281 ILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTL----YNPERTITVKGSIENC 336
Query: 255 KNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSN 314
A I ++RE+ D + + H +P +N A F S
Sbjct: 337 CKAEQEIMKKVREAYENDVAAMSLQSH----------LIPGLNLAAV------GLFPAS- 379
Query: 315 YRSNNYGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQ 374
SN P PS S GAAP S + P E + P VG +IG+ ++ L
Sbjct: 380 --SNAVPPPPSSVS---GAAPYSSFMPP---EQETVHVFIPAQAVGAIIGKKGQHIKQLS 431
Query: 375 NEIGVDLKVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIIT 433
+K+A P S +++ I+ GP + F AQ + G ++ +
Sbjct: 432 RFASASIKIAPPETPDSKVRMVVIT---GPPEAQFKAQGRIYGKLKEENFFGPKEEVKLE 488
Query: 434 TRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAA 492
T + VP+S G + G+ G +++E++ T A + ++ R++ P +V+I+G A+
Sbjct: 489 THIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD--ENEQVIVKIIGHFYAS 545
Query: 493 -------RDALVEV 499
RD L +V
Sbjct: 546 QMAQRKIRDILAQV 559
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2 SV=3
Length = 371
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 144/335 (42%), Gaps = 26/335 (7%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 100
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + I + + A +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + + +P + T+ V I G DA+++ ++ + + T P
Sbjct: 161 AQVQV-AGDMLP---NSTERAVTISG----TPDAIIQCVKQICVVMLESPPKGATIPYRP 212
Query: 522 GPTGSALVVEAASPIDITPAREV---QTVTDPPAATHQSVQIPATSQPSKEAAGSVSETV 578
P + ++ I + +T Q P Q + G
Sbjct: 213 KPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLH 272
Query: 579 KQNESERREDVPTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVS 638
E++ + ++ P ST E+ +P+ + +I + T + +MSGA +
Sbjct: 273 SSEEAQNLMGQSSGLDASP----PASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIK 328
Query: 639 LVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILS 673
+ +++ I I+GTP + AQ ++ + S
Sbjct: 329 IANATEGSSERQITITGTPANISLAQYLINARLTS 363
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 135/359 (37%), Gaps = 91/359 (25%)
Query: 75 LMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGD-EERIIEISDTRR 133
L VT T R+L H + G +IGK G +K +R+ +GA IN+ E G+ ERI+ I+
Sbjct: 42 LNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPERIVTITG--- 95
Query: 134 RDPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVA 193
+A+F I Y EE+ N A
Sbjct: 96 ------------PTDAIFKAFAMIA--------YKFEEDI-----------INSMSNSPA 124
Query: 194 T-------RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQ 246
T R+VV G L+GKGG I+++R T Q+++ LP +E V
Sbjct: 125 TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV--AGDMLPNS---TERAVT 179
Query: 247 VVGDINNVKNAVAIISSRLRESQHRDRS--HFHGRLHSPDRFFPDDDY-------VPHMN 297
+ G + + V I + ES + + + +P F Y +PH +
Sbjct: 180 ISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPD 239
Query: 298 NTAR-----------------RPSMDGARFS-GSNYRSNNYGPRPSGYSIEAGAAPMSDS 339
+ P+ G + S+ + N + SG D+
Sbjct: 240 QLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGL----------DA 289
Query: 340 VQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
P +L P D +G +IG + ++ G +K+A+ +GS E+ ITI+
Sbjct: 290 SPPASTHELTI----PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 344
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 62 SNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH-ELIPG 120
SN+ A S P T R++ + G +IGK GS IK IR+ TGA + V +++P
Sbjct: 120 SNSPATSKPP-------VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 172
Query: 121 DEERIIEISDT 131
ER + IS T
Sbjct: 173 STERAVTISGT 183
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 187 GGGNRVAT-RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIV 245
GG N T R+++ VG ++GK G+ +++MR E+ +I I + + P E IV
Sbjct: 40 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--SEGNCP------ERIV 91
Query: 246 QVVGDINNVKNAVAIISSRLRE 267
+ G + + A A+I+ + E
Sbjct: 92 TITGPTDAIFKAFAMIAYKFEE 113
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 91 GGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDT 131
G +IG+ G+ I IRQ +GA I + G ER I I+ T
Sbjct: 306 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGT 346
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2
Length = 371
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 144/335 (42%), Gaps = 26/335 (7%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+I+TI+ GP D +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTIT---GPTDAI 100
Query: 408 FPAQEALLH-----IQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A + + I + + A +T RL+VP+S+ G L G+ GS + E+R STG
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + + +P + T+ V I G DA+++ ++ + + T P
Sbjct: 161 AQVQV-AGDMLP---NSTERAVTISG----TPDAIIQCVKQICVVMLESPPKGATIPYRP 212
Query: 522 GPTGSALVVEAASPIDITPAREV---QTVTDPPAATHQSVQIPATSQPSKEAAGSVSETV 578
P + ++ I + +T Q P Q + G
Sbjct: 213 KPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLH 272
Query: 579 KQNESERREDVPTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVS 638
E++ + ++ P ST E+ +P+ + +I + T + +MSGA +
Sbjct: 273 SSEEAQNLMGQSSGLDASP----PASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIK 328
Query: 639 LVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILS 673
+ +++ I I+GTP + AQ ++ + S
Sbjct: 329 IANATEGSSERQITITGTPANISLAQYLINARLTS 363
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 147/371 (39%), Gaps = 95/371 (25%)
Query: 65 RANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGD-EE 123
R S + L VT T R+L H + G +IGK G +K +R+ +GA IN+ E G+ E
Sbjct: 32 RMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GNCPE 88
Query: 124 RIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGG 183
RI+ I+ +A+F I Y EE+
Sbjct: 89 RIVTITG---------------PTDAIFKAFAMIA--------YKFEEDI---------- 115
Query: 184 GFRGGGNRVAT-------RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDH 232
N AT R+VV G L+GKGG I+++R T Q+++ LP +
Sbjct: 116 -INSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--N 172
Query: 233 SLPRCVSMS---EEIVQVVGDINNVKNAVAIISSRLRESQ--HRDRSHFHGRLHSPDRFF 287
S R V++S + I+Q V I V ++ S + + +R + + + + +
Sbjct: 173 STERAVTISGTPDAIIQCVKQI-----CVVMLESPPKGATIPYRPKPASTPVIFAGGQAY 227
Query: 288 --------PDDDYVPHMNNTARR-----------PSMDGARFS-GSNYRSNNYGPRPSGY 327
P D + ++ A + P+ G + S+ + N + SG
Sbjct: 228 TIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGL 287
Query: 328 SIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPV 387
D+ P +L P D +G +IG + ++ G +K+A+
Sbjct: 288 ----------DASPPASTHELTI----PNDLIGCIIGRQGTKINEIRQMSGAQIKIANAT 333
Query: 388 DGSDEQIITIS 398
+GS E+ ITI+
Sbjct: 334 EGSSERQITIT 344
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 62 SNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH-ELIPG 120
SN+ A S P T R++ + G +IGK GS IK IR+ TGA + V +++P
Sbjct: 120 SNSPATSKPP-------VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 172
Query: 121 DEERIIEISDT 131
ER + IS T
Sbjct: 173 STERAVTISGT 183
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 91 GGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDT 131
G +IG+ G+ I IRQ +GA I + G ER I I+ T
Sbjct: 306 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGT 346
>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1
Length = 365
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 145/367 (39%), Gaps = 81/367 (22%)
Query: 75 LMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGD-EERIIEISDTRR 133
L VT T R+L H + G +IGK G +K +R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLAGPTN 66
Query: 134 RDPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVA 193
+A +I D+ LE D V
Sbjct: 67 A-----------IFKAFAMIIDK-LEEDISSSMTNSTAASR---------------PPVT 99
Query: 194 TRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMSEEIVQVVG 249
R+VV G L+GKGG I+++R T Q+++ LP +S R ++++ I Q +
Sbjct: 100 LRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIA-GIPQSI- 155
Query: 250 DINNVKNAVAIISSRLRESQHRDRS-HFHGRLHSPDRFFP----------DDDYVPHMN- 297
I VK ++ L +S + + + + S F D PH
Sbjct: 156 -IECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTP 214
Query: 298 NTARRPSMDGARFSGSNYRSNNYGPRP---------------------SGYSIEAGAAPM 336
+ P ++G + P+P +G+S G
Sbjct: 215 SMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS---GIESS 271
Query: 337 SDSVQPFYGEDLVFR-----MLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSD 391
S V+ ++G D + + P D +G +IG + ++ G +K+A+PV+GS
Sbjct: 272 SPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST 331
Query: 392 EQIITIS 398
++ +TI+
Sbjct: 332 DRQVTIT 338
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 94/188 (50%), Gaps = 15/188 (7%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALL-----HIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + + +P + T+ + I G Q+ + + ++ + L + + T P
Sbjct: 129 AQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRP 184
Query: 522 GPTGSALV 529
P+ S ++
Sbjct: 185 KPSSSPVI 192
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 53 MNNNTSINNSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWI 112
+ + S + +N+ A S P T R++ + G +IGK G IK IR+ TGA +
Sbjct: 79 LEEDISSSMTNSTAASRPP-------VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 113 NVH-ELIPGDEERIIEIS 129
V +++P ER I I+
Sbjct: 132 QVAGDMLPNSTERAITIA 149
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 78 TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPE 137
TT++ + + G +IG+ G+ I IRQ +GA I + + G +R + I+
Sbjct: 287 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT-------- 338
Query: 138 GRMPSFSPAQEALFLIHDRILESDGGGG 165
G S S AQ +LI+ R+ GG G
Sbjct: 339 GSAASISLAQ---YLINVRLSSETGGMG 363
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 183 GGFRGGGNRVAT-RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMS 241
G GG N T R+++ VG ++GK G+ +++MR E+ +I I + + P
Sbjct: 4 GVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCP------ 55
Query: 242 EEIVQVVGDINNVKNAVAIISSRLRE 267
E I+ + G N + A A+I +L E
Sbjct: 56 ERIITLAGPTNAIFKAFAMIIDKLEE 81
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 436 LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARD 494
L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD V I G +
Sbjct: 292 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQVTITGSAASISL 346
Query: 495 ALVEVTTRLRS 505
A + RL S
Sbjct: 347 AQYLINVRLSS 357
>sp|O19048|PCBP1_RABIT Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2
SV=1
Length = 356
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 140/358 (39%), Gaps = 71/358 (19%)
Query: 75 LMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRR 134
L VT T R+L H + G +IGK G +K IR+ +GA IN+ E ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTG---- 63
Query: 135 DPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVAT 194
P+ + +A +I D+ LE D V
Sbjct: 64 ------PT-NAIFKAFAMIIDK-LEEDINSSMTNSTAASR---------------PPVTL 100
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+VV G L+GKGG I+++R T Q+++ LP + +E + + G +V
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV--AGDMLP---NSTERAITIAGVPQSV 155
Query: 255 KNAVAIISSRLRESQHRDRSHFHGRLHS-PDRFFPDDDYV---------------PHMNN 298
V I + E+ + GR+ + P + P V PH +
Sbjct: 156 TECVKQICLVMLETLSQSP---QGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATH 212
Query: 299 TARRPSMDGARFSGSNYRS-------NNYGPRPSGYSIEAGAAPMS--DSVQP---FYGE 346
P +D G + S N + S +++ G + DS P Y
Sbjct: 213 DLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWA 272
Query: 347 DL------VFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
L + P + +G +IG + ++ G +K+A+PV+GS + +TI+
Sbjct: 273 SLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT 330
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 153/352 (43%), Gaps = 54/352 (15%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLT---GPTNAI 68
Query: 408 FPAQEALL-----HIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A ++ I + + + A +T RL+VP+++ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + + +P + T+ + I G Q+ + + ++ + L S
Sbjct: 129 AQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETL------------SQ 172
Query: 522 GPTGSALVV-----EAASPIDITPARE-VQTVTDPPAATHQSVQIPATSQPSKEAAGSVS 575
P G + + A+SP+ ++ P ATH ++ P S + ++S
Sbjct: 173 SPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHD-LEGPPLDAYSIQGQHTIS 231
Query: 576 --ETVKQNESERREDVPTVIN------------------RVPLPLVTRSTLEVVLPDYAV 615
+ K N+ R++ +++ L T++T E+ +P+ +
Sbjct: 232 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLI 291
Query: 616 PKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVL 667
+I + + +MSGA + + + + + I+G+ + AQ ++
Sbjct: 292 GCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343
Score = 39.7 bits (91), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 32/114 (28%)
Query: 59 INNSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH-EL 117
IN+S + + + P T R++ + G +IGK G IK IR+ TGA + V ++
Sbjct: 83 INSSMTNSTAASRPP-----VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM 137
Query: 118 IPGDEERIIEIS------------------DTRRRDPEGR--------MPSFSP 145
+P ER I I+ +T + P+GR MP+ SP
Sbjct: 138 LPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSP 191
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 79 TTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEG 138
TT+ + + G +IG+ G+ I IRQ +GA I + + G R + I+ G
Sbjct: 280 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT--------G 331
Query: 139 RMPSFSPAQEALFLIHDRILESDGGG 164
S S AQ +LI+ R+ G G
Sbjct: 332 SAASISLAQ---YLINARLSSEKGMG 354
>sp|P60335|PCBP1_MOUSE Poly(rC)-binding protein 1 OS=Mus musculus GN=Pcbp1 PE=1 SV=1
Length = 356
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 140/358 (39%), Gaps = 71/358 (19%)
Query: 75 LMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRR 134
L VT T R+L H + G +IGK G +K IR+ +GA IN+ E ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTG---- 63
Query: 135 DPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVAT 194
P+ + +A +I D+ LE D V
Sbjct: 64 ------PT-NAIFKAFAMIIDK-LEEDINSSMTNSTAASR---------------PPVTL 100
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+VV G L+GKGG I+++R T Q+++ LP + +E + + G +V
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV--AGDMLP---NSTERAITIAGVPQSV 155
Query: 255 KNAVAIISSRLRESQHRDRSHFHGRLHS-PDRFFPDDDYV---------------PHMNN 298
V I + E+ + GR+ + P + P V PH +
Sbjct: 156 TECVKQICLVMLETLSQSP---QGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATH 212
Query: 299 TARRPSMDGARFSGSNYRS-------NNYGPRPSGYSIEAGAAPMS--DSVQP---FYGE 346
P +D G + S N + S +++ G + DS P Y
Sbjct: 213 DLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWA 272
Query: 347 DL------VFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
L + P + +G +IG + ++ G +K+A+PV+GS + +TI+
Sbjct: 273 SLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT 330
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 153/352 (43%), Gaps = 54/352 (15%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLT---GPTNAI 68
Query: 408 FPAQEALL-----HIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A ++ I + + + A +T RL+VP+++ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + + +P + T+ + I G Q+ + + ++ + L S
Sbjct: 129 AQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETL------------SQ 172
Query: 522 GPTGSALVV-----EAASPIDITPARE-VQTVTDPPAATHQSVQIPATSQPSKEAAGSVS 575
P G + + A+SP+ ++ P ATH ++ P S + ++S
Sbjct: 173 SPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHD-LEGPPLDAYSIQGQHTIS 231
Query: 576 --ETVKQNESERREDVPTVIN------------------RVPLPLVTRSTLEVVLPDYAV 615
+ K N+ R++ +++ L T++T E+ +P+ +
Sbjct: 232 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLI 291
Query: 616 PKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVL 667
+I + + +MSGA + + + + + I+G+ + AQ ++
Sbjct: 292 GCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343
Score = 39.7 bits (91), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 32/114 (28%)
Query: 59 INNSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH-EL 117
IN+S + + + P T R++ + G +IGK G IK IR+ TGA + V ++
Sbjct: 83 INSSMTNSTAASRPP-----VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM 137
Query: 118 IPGDEERIIEIS------------------DTRRRDPEGR--------MPSFSP 145
+P ER I I+ +T + P+GR MP+ SP
Sbjct: 138 LPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSP 191
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 79 TTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEG 138
TT+ + + G +IG+ G+ I IRQ +GA I + + G R + I+ G
Sbjct: 280 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT--------G 331
Query: 139 RMPSFSPAQEALFLIHDRILESDGGG 164
S S AQ +LI+ R+ G G
Sbjct: 332 SAASISLAQ---YLINARLSSEKGMG 354
>sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2
Length = 356
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 140/358 (39%), Gaps = 71/358 (19%)
Query: 75 LMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRR 134
L VT T R+L H + G +IGK G +K IR+ +GA IN+ E ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTG---- 63
Query: 135 DPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVAT 194
P+ + +A +I D+ LE D V
Sbjct: 64 ------PT-NAIFKAFAMIIDK-LEEDINSSMTNSTAASR---------------PPVTL 100
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+VV G L+GKGG I+++R T Q+++ LP + +E + + G +V
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV--AGDMLP---NSTERAITIAGVPQSV 155
Query: 255 KNAVAIISSRLRESQHRDRSHFHGRLHS-PDRFFPDDDYV---------------PHMNN 298
V I + E+ + GR+ + P + P V PH +
Sbjct: 156 TECVKQICLVMLETLSQSP---QGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATH 212
Query: 299 TARRPSMDGARFSGSNYRS-------NNYGPRPSGYSIEAGAAPMS--DSVQP---FYGE 346
P +D G + S N + S +++ G + DS P Y
Sbjct: 213 DLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWA 272
Query: 347 DL------VFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
L + P + +G +IG + ++ G +K+A+PV+GS + +TI+
Sbjct: 273 SLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT 330
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 153/352 (43%), Gaps = 54/352 (15%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLT---GPTNAI 68
Query: 408 FPAQEALL-----HIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A ++ I + + + A +T RL+VP+++ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + + +P + T+ + I G Q+ + + ++ + L S
Sbjct: 129 AQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETL------------SQ 172
Query: 522 GPTGSALVV-----EAASPIDITPARE-VQTVTDPPAATHQSVQIPATSQPSKEAAGSVS 575
P G + + A+SP+ ++ P ATH ++ P S + ++S
Sbjct: 173 SPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHD-LEGPPLDAYSIQGQHTIS 231
Query: 576 --ETVKQNESERREDVPTVIN------------------RVPLPLVTRSTLEVVLPDYAV 615
+ K N+ R++ +++ L T++T E+ +P+ +
Sbjct: 232 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLI 291
Query: 616 PKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVL 667
+I + + +MSGA + + + + + I+G+ + AQ ++
Sbjct: 292 GCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343
Score = 39.7 bits (91), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 32/114 (28%)
Query: 59 INNSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH-EL 117
IN+S + + + P T R++ + G +IGK G IK IR+ TGA + V ++
Sbjct: 83 INSSMTNSTAASRPP-----VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM 137
Query: 118 IPGDEERIIEIS------------------DTRRRDPEGR--------MPSFSP 145
+P ER I I+ +T + P+GR MP+ SP
Sbjct: 138 LPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSP 191
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 79 TTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEG 138
TT+ + + G +IG+ G+ I IRQ +GA I + + G R + I+ G
Sbjct: 280 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT--------G 331
Query: 139 RMPSFSPAQEALFLIHDRILESDGGG 164
S S AQ +LI+ R+ G G
Sbjct: 332 SAASISLAQ---YLINARLSSEKGMG 354
>sp|Q5E9A3|PCBP1_BOVIN Poly(rC)-binding protein 1 OS=Bos taurus GN=PCBP1 PE=2 SV=1
Length = 356
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 140/358 (39%), Gaps = 71/358 (19%)
Query: 75 LMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRR 134
L VT T R+L H + G +IGK G +K IR+ +GA IN+ E ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTG---- 63
Query: 135 DPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVAT 194
P+ + +A +I D+ LE D V
Sbjct: 64 ------PT-NAIFKAFAMIIDK-LEEDINSSMTNSTAASR---------------PPVTL 100
Query: 195 RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNV 254
R+VV G L+GKGG I+++R T Q+++ LP + +E + + G +V
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV--AGDMLP---NSTERAITIAGVPQSV 155
Query: 255 KNAVAIISSRLRESQHRDRSHFHGRLHS-PDRFFPDDDYV---------------PHMNN 298
V I + E+ + GR+ + P + P V PH +
Sbjct: 156 TECVKQICLVMLETLSQSP---QGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATH 212
Query: 299 TARRPSMDGARFSGSNYRS-------NNYGPRPSGYSIEAGAAPMS--DSVQP---FYGE 346
P +D G + S N + S +++ G + DS P Y
Sbjct: 213 DLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWA 272
Query: 347 DL------VFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITIS 398
L + P + +G +IG + ++ G +K+A+PV+GS + +TI+
Sbjct: 273 SLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT 330
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 153/352 (43%), Gaps = 54/352 (15%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLT---GPTNAI 68
Query: 408 FPAQEALL-----HIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A ++ I + + + A +T RL+VP+++ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRDFFQKETPPSST 521
A +Q+ + + +P + T+ + I G Q+ + + ++ + L S
Sbjct: 129 AQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETL------------SQ 172
Query: 522 GPTGSALVV-----EAASPIDITPARE-VQTVTDPPAATHQSVQIPATSQPSKEAAGSVS 575
P G + + A+SP+ ++ P ATH ++ P S + ++S
Sbjct: 173 SPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHD-LEGPPLDAYSIQGQHTIS 231
Query: 576 --ETVKQNESERREDVPTVIN------------------RVPLPLVTRSTLEVVLPDYAV 615
+ K N+ R++ +++ L T++T E+ +P+ +
Sbjct: 232 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLI 291
Query: 616 PKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVL 667
+I + + +MSGA + + + + + I+G+ + AQ ++
Sbjct: 292 GCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343
Score = 39.7 bits (91), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 32/114 (28%)
Query: 59 INNSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH-EL 117
IN+S + + + P T R++ + G +IGK G IK IR+ TGA + V ++
Sbjct: 83 INSSMTNSTAASRPP-----VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM 137
Query: 118 IPGDEERIIEIS------------------DTRRRDPEGR--------MPSFSP 145
+P ER I I+ +T + P+GR MP+ SP
Sbjct: 138 LPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSP 191
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 79 TTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEG 138
TT+ + + G +IG+ G+ I IRQ +GA I + + G R + I+ G
Sbjct: 280 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT--------G 331
Query: 139 RMPSFSPAQEALFLIHDRILESDGGG 164
S S AQ +LI+ R+ G G
Sbjct: 332 SAASISLAQ---YLINARLSSEKGMG 354
>sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 OS=Mus musculus GN=Pcbp2 PE=1 SV=1
Length = 362
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 141/361 (39%), Gaps = 72/361 (19%)
Query: 75 LMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGD-EERIIEISDTRR 133
L VT T R+L H + G +IGK G +K +R+ +GA IN+ E G+ ERII ++
Sbjct: 10 LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLAGPTN 66
Query: 134 RDPEGRMPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVA 193
+A +I D+ LE D V
Sbjct: 67 A-----------IFKAFAMIIDK-LEEDISSSMTNSTAASR---------------PPVT 99
Query: 194 TRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRI----LPRDHSLPRCVSMS---EEIVQ 246
R+VV G L+GKGG I+++R T Q+++ LP +S R ++++ + I++
Sbjct: 100 LRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGIPQSIIE 157
Query: 247 VVGDINNV--KNAVAIISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYV--PHMN-NTAR 301
V I V ++ ++ R F G DR+ D PH +
Sbjct: 158 CVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAG---GQDRYSTGSDSASFPHTTPSMCL 214
Query: 302 RPSMDGARFSGSNYRSNNYGPRPS-----GYSIEAGAAPMSDSVQPFYG----------- 345
P ++G + P+P +++ PM+ F G
Sbjct: 215 NPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGY 274
Query: 346 --------EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITI 397
+ + P D +G +IG + ++ G +K+A+PV+GS ++ +TI
Sbjct: 275 WAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 334
Query: 398 S 398
+
Sbjct: 335 T 335
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDEL 407
L R+L +VG +IG+ V+ ++ E G + +++ E+IIT++ GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLA---GPTNAI 68
Query: 408 FPAQEALL-----HIQTRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTG 461
F A ++ I + + + A +T RL+VP+S+ G L G+ G + E+R STG
Sbjct: 69 FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 462 ANIQI 466
A +Q+
Sbjct: 129 AQVQV 133
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 53 MNNNTSINNSNNRANSNPKDPSLMVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWI 112
+ + S + +N+ A S P T R++ + G +IGK G IK IR+ TGA +
Sbjct: 79 LEEDISSSMTNSTAASRPP-------VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 113 NVH-ELIPGDEERIIEIS 129
V +++P ER I I+
Sbjct: 132 QVAGDMLPNSTERAITIA 149
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 78 TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPE 137
TT++ + + G +IG+ G+ I IRQ +GA I + + G +R + I+
Sbjct: 284 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT-------- 335
Query: 138 GRMPSFSPAQEALFLIHDRILESDGGGG 165
G S S AQ +LI+ R+ GG G
Sbjct: 336 GSAASISLAQ---YLINVRLSSETGGMG 360
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 183 GGFRGGGNRVAT-RMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMS 241
G GG N T R+++ VG ++GK G+ +++MR E+ +I I + + P
Sbjct: 4 GVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCP------ 55
Query: 242 EEIVQVVGDINNVKNAVAIISSRLRE 267
E I+ + G N + A A+I +L E
Sbjct: 56 ERIITLAGPTNAIFKAFAMIIDKLEE 81
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 436 LLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARD 494
L +P+ IGC+ GR G+ ++E+R+ +GA I+I + E TD V I G +
Sbjct: 289 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----GSTDRQVTITGSAASISL 343
Query: 495 ALVEVTTRLRS 505
A + RL S
Sbjct: 344 AQYLINVRLSS 354
>sp|O88477|IF2B1_MOUSE Insulin-like growth factor 2 mRNA-binding protein 1 OS=Mus musculus
GN=Igf2bp1 PE=1 SV=1
Length = 577
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 176/433 (40%), Gaps = 86/433 (19%)
Query: 82 RILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH-ELIPGDEERIIEISDTRRRDPEGRM 140
R+L G +IGK G+ I++I + T + I+VH + G E+ I + T PEG
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHST----PEG-- 252
Query: 141 PSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSR 200
S + L ++H ++ + V +++
Sbjct: 253 -CSSACKMILEIMHKEAKDTKTA--------------------------DEVPLKILAHN 285
Query: 201 MHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVA 259
VG L+GK G+ ++++ +T+T+I I +D +L E + V G I N A
Sbjct: 286 NFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYN----PERTITVKGAIENCCRAEQ 341
Query: 260 IISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNN 319
I ++RE+ D + + H +P +N + +
Sbjct: 342 EIMKKVREAYENDVAAMSLQSH----------LIPGLN------------LAAVGLFPAS 379
Query: 320 YGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGV 379
P S GAAP S +Q E + ++ P VG +IG+ ++ L
Sbjct: 380 SSAVPPPPSSVTGAAPYSSFMQA--PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASA 437
Query: 380 DLKVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLV 438
+K+A P S +++ I+ GP + F AQ + G ++ + T + V
Sbjct: 438 SIKIAPPETPDSKVRMVVIT---GPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRV 494
Query: 439 PSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDE----LVQIVGEIQAA- 492
P+S G + G+ G +++E++ T A + ++ R++ P DE +V+I+G A+
Sbjct: 495 PASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP------DENDQVIVKIIGHFYASQ 547
Query: 493 ------RDALVEV 499
RD L +V
Sbjct: 548 MAQRKIRDILAQV 560
>sp|Q9NZI8|IF2B1_HUMAN Insulin-like growth factor 2 mRNA-binding protein 1 OS=Homo sapiens
GN=IGF2BP1 PE=1 SV=2
Length = 577
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 176/433 (40%), Gaps = 86/433 (19%)
Query: 82 RILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH-ELIPGDEERIIEISDTRRRDPEGRM 140
R+L G +IGK G+ I++I + T + I+VH + G E+ I + T PEG
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHST----PEG-- 252
Query: 141 PSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSR 200
S + L ++H ++ + V +++
Sbjct: 253 -CSSACKMILEIMHKEAKDTKTA--------------------------DEVPLKILAHN 285
Query: 201 MHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVA 259
VG L+GK G+ ++++ +T+T+I I +D +L E + V G I N A
Sbjct: 286 NFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYN----PERTITVKGAIENCCRAEQ 341
Query: 260 IISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNN 319
I ++RE+ D + + H +P +N + +
Sbjct: 342 EIMKKVREAYENDVAAMSLQSH----------LIPGLN------------LAAVGLFPAS 379
Query: 320 YGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGV 379
P S GAAP S +Q E + ++ P VG +IG+ ++ L
Sbjct: 380 SSAVPPPPSSVTGAAPYSSFMQA--PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASA 437
Query: 380 DLKVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLV 438
+K+A P S +++ I+ GP + F AQ + G ++ + T + V
Sbjct: 438 SIKIAPPETPDSKVRMVIIT---GPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRV 494
Query: 439 PSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDE----LVQIVGEIQAA- 492
P+S G + G+ G +++E++ T A + ++ R++ P DE +V+I+G A+
Sbjct: 495 PASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP------DENDQVIVKIIGHFYASQ 547
Query: 493 ------RDALVEV 499
RD L +V
Sbjct: 548 MAQRKIRDILAQV 560
>sp|Q8CGX0|IF2B1_RAT Insulin-like growth factor 2 mRNA-binding protein 1 OS=Rattus
norvegicus GN=Igf2bp1 PE=1 SV=1
Length = 577
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 96/433 (22%), Positives = 175/433 (40%), Gaps = 86/433 (19%)
Query: 82 RILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVH-ELIPGDEERIIEISDTRRRDPEGRM 140
R+L G +IGK G+ I++I + T + I+VH + G E+ I + T PEG
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHST----PEG-- 252
Query: 141 PSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSR 200
S + L ++H ++ + V +++
Sbjct: 253 -CSSACKMILEIMHKEAKDTKTA--------------------------DEVPLKILAHN 285
Query: 201 MHVGCLLGKGGKIIEQMRMETKTQIRILP-RDHSLPRCVSMSEEIVQVVGDINNVKNAVA 259
VG L+GK G+ ++++ +T+T+I I +D +L E + V G I N A
Sbjct: 286 NFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYN----PERTITVKGAIENCCRAEQ 341
Query: 260 IISSRLRESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNN 319
I ++RE+ D + + H +P +N + +
Sbjct: 342 EIMKKVREAYENDVAAMSLQSH----------LIPGLN------------LAAVGLFPAS 379
Query: 320 YGPRPSGYSIEAGAAPMSDSVQPFYGEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGV 379
P S GAAP +Q E + ++ P VG +IG+ ++ L
Sbjct: 380 SSAVPPPPSSVTGAAPYGSFMQA--PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASA 437
Query: 380 DLKVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGADKDNIITTRLLV 438
+K+A P S +++ I+ GP + F AQ + G ++ + T + V
Sbjct: 438 SIKIAPPETPDSKVRMVVIT---GPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRV 494
Query: 439 PSSEIGCLEGRDG-SLSEMRRSTGANIQILSREEVPACVSGTDE----LVQIVGEIQAA- 492
P+S G + G+ G +++E++ T A + ++ R++ P DE +V+I+G A+
Sbjct: 495 PASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP------DENDQVIVKIIGHFYASQ 547
Query: 493 ------RDALVEV 499
RD L +V
Sbjct: 548 MAQRKIRDILAQV 560
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1
PE=1 SV=3
Length = 644
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 35/190 (18%)
Query: 83 ILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIP---GDEERIIEISDTRRRDPEGR 139
I+ KAG VIGK G IK +++ G + + + P G ++ + D +
Sbjct: 190 IMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKE 249
Query: 140 MPSFSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVS 199
M L LI D+ GGF E EYG R GGN + +
Sbjct: 250 M--------VLELIRDQ-------GGFR-EVRNEYGS---------RIGGNE-GIDVPIP 283
Query: 200 RMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVA 259
R VG ++G+ G++I++++ + +I+ P D + P E I Q+ G + ++A
Sbjct: 284 RFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP------ERIAQITGPPDRCQHAAE 337
Query: 260 IISSRLRESQ 269
II+ LR Q
Sbjct: 338 IITDLLRSVQ 347
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3
PE=1 SV=2
Length = 572
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 36/199 (18%)
Query: 78 TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHE--LIPGDEERIIEISDTRRRD 135
+T IL K G VIG+ G IK +++ TG + + + +P ++ + I+ +
Sbjct: 162 STIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFK- 220
Query: 136 PEGRMPSFSPAQEALFLIHDRILESDGGG--GFYGEEEEEYGGGGGVGGGGFRGGGNRVA 193
Q+A ++ + I E D G G+ GGG +
Sbjct: 221 ----------VQQAREMVLEIIREKDQADFRGVRGDFNSRMGGG---------------S 255
Query: 194 TRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINN 253
+ V R VG ++G+ G++I++++ + +I+ P D P E QV+G +
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP------ERAAQVMGPPDR 309
Query: 254 VKNAVAIISSRLRESQHRD 272
++A IIS + +Q RD
Sbjct: 310 CQHAAHIISELILTAQERD 328
Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 118/289 (40%), Gaps = 42/289 (14%)
Query: 417 IQTRIVD------LGA--DKDNIITTRLLVPSSEIGCLEGRDG-SLSEMRRSTGANIQIL 467
+Q R +D LGA + +IT VP +G + GR G +S ++ +G IQI
Sbjct: 55 VQKRPLDDGVGNQLGALVHQRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIA 114
Query: 468 SRE----EVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY--LYRDFFQKET----- 516
S E P ++GT E I+ A+ L ++ R R+ + D T
Sbjct: 115 SESSGIPERPCVLTGTPE------SIEQAKRLLGQIVDRCRNGPGFHNDIDSNSTIQEIL 168
Query: 517 -PPSSTGPTGSALVV----EAASPIDITPAREVQTVTDPPAAT--HQSVQIPATSQPSKE 569
P S G LV+ E + ++ + D P T + ++I + ++
Sbjct: 169 IPASKVG-----LVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQ 223
Query: 570 AAGSVSETVKQNESERREDVPTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRF 629
A V E +++ + V N + ++EV +P +AV +I ++ ++ +
Sbjct: 224 AREMVLEIIREKDQADFRGVRGDFNS----RMGGGSIEVSVPRFAVGIVIGRNGEMIKKI 279
Query: 630 SEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQDAD 678
+G + ++ Q+ G P++ + A ++ IL+ Q+ D
Sbjct: 280 QNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILTAQERD 328
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 269,941,601
Number of Sequences: 539616
Number of extensions: 12850876
Number of successful extensions: 162698
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 317
Number of HSP's that attempted gapping in prelim test: 60655
Number of HSP's gapped (non-prelim): 45640
length of query: 678
length of database: 191,569,459
effective HSP length: 124
effective length of query: 554
effective length of database: 124,657,075
effective search space: 69060019550
effective search space used: 69060019550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)