Query 005758
Match_columns 678
No_of_seqs 324 out of 2280
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 06:40:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvz_A KH type-splicing, FAR u 99.9 1.2E-23 4E-28 200.2 15.2 160 432-675 2-162 (164)
2 3n89_A Defective in GERM LINE 99.9 4.5E-24 1.5E-28 223.4 11.8 229 188-505 26-261 (376)
3 2anr_A Neuro-oncological ventr 99.9 2.2E-23 7.5E-28 201.0 12.8 172 76-269 3-177 (178)
4 3krm_A Insulin-like growth fac 99.9 5.3E-23 1.8E-27 195.4 14.7 156 78-269 2-158 (163)
5 2jzx_A Poly(RC)-binding protei 99.9 4.6E-23 1.6E-27 195.2 11.6 156 429-673 2-159 (160)
6 2jzx_A Poly(RC)-binding protei 99.9 3.8E-23 1.3E-27 195.8 10.5 158 76-267 2-159 (160)
7 3krm_A Insulin-like growth fac 99.9 1.7E-22 5.8E-27 191.9 13.4 153 348-506 3-157 (163)
8 2jvz_A KH type-splicing, FAR u 99.9 4.2E-22 1.4E-26 189.5 14.0 158 79-268 2-161 (164)
9 2anr_A Neuro-oncological ventr 99.9 8.2E-23 2.8E-27 197.0 8.6 156 345-506 3-176 (178)
10 3n89_A Defective in GERM LINE 99.9 2.9E-22 9.9E-27 209.7 12.3 218 346-671 28-259 (376)
11 1j4w_A FUSE binding protein; s 99.9 4.4E-22 1.5E-26 191.1 12.4 168 78-265 2-174 (174)
12 1j4w_A FUSE binding protein; s 99.9 1E-21 3.4E-26 188.6 11.2 152 347-503 2-174 (174)
13 2qnd_A FMR1 protein; KH domain 99.7 1.3E-17 4.6E-22 153.8 9.9 134 431-674 3-143 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 7.3E-17 2.5E-21 148.9 7.6 136 347-505 3-142 (144)
15 1wvn_A Poly(RC)-binding protei 99.6 2.4E-15 8.1E-20 125.0 6.3 74 602-675 4-77 (82)
16 1zzk_A Heterogeneous nuclear r 99.6 5.8E-15 2E-19 122.6 8.3 72 602-673 5-76 (82)
17 2p2r_A Poly(RC)-binding protei 99.6 2.5E-15 8.5E-20 123.0 5.5 72 603-674 4-75 (76)
18 2e3u_A PH-DIM2P, hypothetical 99.6 4.4E-15 1.5E-19 145.6 8.2 151 78-270 33-194 (219)
19 2e3u_A PH-DIM2P, hypothetical 99.5 2.2E-14 7.7E-19 140.6 8.4 139 348-505 34-191 (219)
20 1dtj_A RNA-binding neurooncolo 99.5 2.4E-14 8.1E-19 117.3 7.1 71 603-673 2-75 (76)
21 1x4n_A FAR upstream element bi 99.5 1.8E-14 6.1E-19 122.3 6.4 74 603-676 14-87 (92)
22 1j5k_A Heterogeneous nuclear r 99.5 1.6E-14 5.5E-19 121.9 4.8 72 602-673 12-83 (89)
23 2hh3_A KH-type splicing regula 99.5 8.6E-14 2.9E-18 120.8 7.3 72 604-675 11-82 (106)
24 1ec6_A RNA-binding protein NOV 99.4 3.8E-14 1.3E-18 119.1 4.6 73 603-675 2-77 (87)
25 2axy_A Poly(RC)-binding protei 99.4 5.6E-14 1.9E-18 113.8 5.1 69 603-673 4-72 (73)
26 2hh2_A KH-type splicing regula 99.4 1.8E-13 6.1E-18 119.4 7.8 72 603-674 6-80 (107)
27 2cte_A Vigilin; K homology typ 99.4 2.8E-13 9.7E-18 115.3 7.2 74 601-676 14-87 (94)
28 2opv_A KHSRP protein; KH domai 99.4 4.1E-13 1.4E-17 112.2 8.0 70 603-672 13-84 (85)
29 2dgr_A Ring finger and KH doma 99.4 9.5E-14 3.3E-18 114.8 3.8 69 602-673 8-76 (83)
30 1x4m_A FAR upstream element bi 99.4 2.4E-13 8.2E-18 115.8 5.2 73 602-674 13-87 (94)
31 1we8_A Tudor and KH domain con 99.4 5.2E-13 1.8E-17 116.0 6.7 72 603-674 14-87 (104)
32 2ctm_A Vigilin; K homology typ 99.4 8.1E-13 2.8E-17 112.4 7.5 73 600-673 13-85 (95)
33 1tua_A Hypothetical protein AP 99.4 5.3E-13 1.8E-17 127.5 7.0 148 80-270 5-163 (191)
34 1vig_A Vigilin; RNA-binding pr 99.4 4.5E-13 1.5E-17 107.8 5.5 67 603-671 4-70 (71)
35 2ctl_A Vigilin; K homology typ 99.3 1.3E-12 4.5E-17 111.7 7.2 72 602-673 15-87 (97)
36 2axy_A Poly(RC)-binding protei 99.3 1E-12 3.5E-17 106.4 5.8 70 190-267 3-72 (73)
37 1dtj_A RNA-binding neurooncolo 99.3 1.6E-12 5.4E-17 106.3 6.1 74 191-267 2-75 (76)
38 1zzk_A Heterogeneous nuclear r 99.3 4.2E-12 1.4E-16 105.2 8.7 72 430-506 5-77 (82)
39 1tua_A Hypothetical protein AP 99.3 2.2E-12 7.6E-17 123.2 7.4 139 350-505 6-160 (191)
40 2p2r_A Poly(RC)-binding protei 99.3 1.7E-12 5.8E-17 106.1 5.6 71 430-505 3-74 (76)
41 2ctf_A Vigilin; K homology typ 99.3 6.1E-12 2.1E-16 108.3 8.5 67 604-675 27-94 (102)
42 1wvn_A Poly(RC)-binding protei 99.3 4.9E-12 1.7E-16 104.9 7.4 74 76-160 3-76 (82)
43 1ec6_A RNA-binding protein NOV 99.3 3.3E-12 1.1E-16 107.2 5.6 75 192-269 3-77 (87)
44 2ctk_A Vigilin; K homology typ 99.3 4.6E-12 1.6E-16 109.6 6.5 69 603-673 16-84 (104)
45 2ctj_A Vigilin; K homology typ 99.3 4.6E-12 1.6E-16 107.5 6.1 75 599-675 12-87 (95)
46 1j5k_A Heterogeneous nuclear r 99.3 4.2E-12 1.4E-16 107.0 5.7 74 189-268 11-84 (89)
47 2dgr_A Ring finger and KH doma 99.2 3.6E-12 1.2E-16 105.3 4.5 70 189-267 7-76 (83)
48 2opv_A KHSRP protein; KH domai 99.2 1.6E-11 5.3E-16 102.6 8.3 72 430-504 12-84 (85)
49 1x4n_A FAR upstream element bi 99.2 1.6E-11 5.3E-16 104.1 7.9 74 189-268 12-85 (92)
50 1x4m_A FAR upstream element bi 99.2 1.7E-11 5.8E-16 104.3 6.6 76 189-268 12-87 (94)
51 2ctm_A Vigilin; K homology typ 99.2 3.2E-11 1.1E-15 102.6 7.8 77 426-508 11-88 (95)
52 2hh2_A KH-type splicing regula 99.2 2.5E-11 8.4E-16 105.8 6.8 73 193-268 8-80 (107)
53 2hh3_A KH-type splicing regula 99.2 3.6E-11 1.2E-15 104.2 7.2 71 431-506 10-81 (106)
54 1we8_A Tudor and KH domain con 99.2 6.4E-11 2.2E-15 102.7 8.7 75 429-506 12-87 (104)
55 2cte_A Vigilin; K homology typ 99.2 4.5E-11 1.5E-15 101.7 6.9 73 427-506 12-85 (94)
56 1vig_A Vigilin; RNA-binding pr 99.1 2.2E-11 7.7E-16 97.8 4.6 68 190-265 3-70 (71)
57 2ctl_A Vigilin; K homology typ 99.1 8.4E-11 2.9E-15 100.4 7.9 73 430-506 15-88 (97)
58 2ctk_A Vigilin; K homology typ 99.0 3E-10 1E-14 98.2 5.4 70 191-268 16-85 (104)
59 2ctj_A Vigilin; K homology typ 99.0 3.9E-10 1.3E-14 95.6 5.7 73 188-268 13-86 (95)
60 2ctf_A Vigilin; K homology typ 99.0 6.4E-10 2.2E-14 95.7 6.6 67 191-268 26-93 (102)
61 2cpq_A FragIle X mental retard 98.9 5.9E-10 2E-14 92.7 2.6 65 602-671 13-79 (91)
62 2cpq_A FragIle X mental retard 98.6 8E-08 2.7E-12 79.8 6.7 67 188-265 11-79 (91)
63 1k1g_A SF1-BO isoform; splicin 98.5 3.3E-07 1.1E-11 82.2 7.8 72 602-673 5-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.4 7.8E-07 2.7E-11 78.1 8.6 79 189-267 9-99 (119)
65 2yqr_A KIAA0907 protein; struc 98.3 5.8E-07 2E-11 78.9 6.5 73 603-675 11-101 (119)
66 1k1g_A SF1-BO isoform; splicin 98.3 1.1E-06 3.9E-11 78.7 7.8 79 190-268 5-100 (131)
67 2bl5_A MGC83862 protein, quaki 97.9 8E-06 2.7E-10 73.5 4.2 72 605-676 3-104 (140)
68 2bl5_A MGC83862 protein, quaki 97.8 6.9E-06 2.3E-10 73.9 3.0 76 192-267 2-101 (140)
69 3v69_A Protein filia; RNA-bind 97.8 3.8E-05 1.3E-09 67.5 6.6 66 606-672 58-123 (140)
70 3u1k_A Polyribonucleotide nucl 97.7 2.9E-05 1E-09 87.4 5.5 92 144-265 537-629 (630)
71 3u1k_A Polyribonucleotide nucl 97.4 9.8E-05 3.4E-09 83.1 5.6 85 408-503 537-629 (630)
72 3v69_A Protein filia; RNA-bind 97.1 0.00075 2.6E-08 59.4 6.7 68 193-267 57-124 (140)
73 2cxc_A NUSA; transcription ter 97.0 0.00048 1.6E-08 62.3 4.7 104 79-228 36-139 (144)
74 4aid_A Polyribonucleotide nucl 97.0 0.00032 1.1E-08 79.9 4.3 95 143-267 539-634 (726)
75 2cxc_A NUSA; transcription ter 96.6 0.001 3.5E-08 60.2 3.2 100 348-467 36-139 (144)
76 4aid_A Polyribonucleotide nucl 96.4 0.00065 2.2E-08 77.4 0.8 63 605-673 571-634 (726)
77 2asb_A Transcription elongatio 94.4 0.056 1.9E-06 53.1 6.5 39 192-230 184-222 (251)
78 1k0r_A NUSA; two component arr 93.9 0.086 2.9E-06 54.8 6.8 96 88-230 249-345 (366)
79 3cdi_A Polynucleotide phosphor 93.7 0.018 6.2E-07 65.8 1.6 64 192-267 560-624 (723)
80 1e3p_A Guanosine pentaphosphat 93.3 0.014 4.7E-07 67.1 -0.2 62 192-265 598-660 (757)
81 3cdi_A Polynucleotide phosphor 92.3 0.025 8.6E-07 64.7 0.0 63 604-672 560-623 (723)
82 2asb_A Transcription elongatio 92.1 0.12 4.3E-06 50.7 4.7 94 357-471 126-224 (251)
83 1k0r_A NUSA; two component arr 92.1 0.081 2.8E-06 55.0 3.6 93 357-470 249-346 (366)
84 1hh2_P NUSA, N utilization sub 91.1 0.27 9.4E-06 50.9 6.2 38 192-229 303-340 (344)
85 1e3p_A Guanosine pentaphosphat 90.6 0.013 4.6E-07 67.2 -4.5 60 606-671 600-660 (757)
86 1hh2_P NUSA, N utilization sub 89.4 0.22 7.7E-06 51.5 3.9 93 357-469 245-341 (344)
87 2pt7_G HP1451, hypothetical pr 59.8 4.2 0.00014 36.8 2.3 34 80-113 34-67 (152)
88 1wh9_A 40S ribosomal protein S 58.7 3.8 0.00013 33.7 1.7 28 80-107 36-63 (92)
89 2pt7_G HP1451, hypothetical pr 51.0 7.1 0.00024 35.3 2.3 66 193-268 34-99 (152)
90 2ba0_A Archeal exosome RNA bin 40.0 28 0.00096 33.6 4.8 58 606-669 138-195 (229)
91 1wh9_A 40S ribosomal protein S 39.8 9.9 0.00034 31.2 1.3 28 193-220 36-63 (92)
92 3ukx_C Bimax2 peptide; arm rep 31.9 37 0.0013 20.2 2.5 11 3-13 5-15 (28)
93 3gku_A Probable RNA-binding pr 26.9 20 0.00067 34.6 1.2 34 81-114 94-127 (225)
94 3u5c_D RP13, YS3, 40S ribosoma 26.7 23 0.00079 34.3 1.6 28 81-108 46-73 (240)
95 3gku_A Probable RNA-binding pr 26.2 56 0.0019 31.4 4.2 67 193-267 93-159 (225)
96 3j20_C 30S ribosomal protein S 25.7 23 0.00077 33.8 1.3 27 81-107 42-68 (210)
97 2z0s_A Probable exosome comple 25.5 89 0.0031 30.1 5.7 59 606-670 150-209 (235)
98 2xzm_C KH domain containing pr 23.6 31 0.0011 33.5 1.9 28 80-107 48-75 (243)
99 3iz6_B 40S ribosomal protein S 22.7 23 0.00079 34.1 0.8 29 80-108 45-73 (227)
100 3dhx_A Methionine import ATP-b 21.5 1.5E+02 0.0051 24.5 5.6 48 623-670 35-88 (106)
101 2ba0_A Archeal exosome RNA bin 21.4 1.4E+02 0.0046 28.7 6.0 58 194-263 138-195 (229)
No 1
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=200.20 Aligned_cols=160 Identities=18% Similarity=0.380 Sum_probs=127.5
Q ss_pred eEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhhhhcc
Q 005758 432 ITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYRD 510 (678)
Q Consensus 432 ~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~~~~~~ 510 (678)
++.+|+||.+++|.||||+|+ |++|+++|||+|++.++...+ ...++.|+|+|++++|.+|+.+|.+++.+...
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~-- 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRERDQ-- 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS---SSSCEEEEEEECHHHHHHHHHHHHHHTTCSSS--
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhccC--
Confidence 578999999999999999999 999999999999996533222 34789999999999999999999988754210
Q ss_pred cCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcccCCCCccccccCcccccCCCc
Q 005758 511 FFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPSKEAAGSVSETVKQNESERREDVP 590 (678)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 590 (678)
. + . .++..| +.
T Consensus 77 ---~---------~-------------~-~~~~~~-------------------------~~------------------ 87 (164)
T 2jvz_A 77 ---G---------G-------------F-GDRNEY-------------------------GS------------------ 87 (164)
T ss_dssp ---C---------C-------------C-SSCSSC-------------------------TT------------------
T ss_pred ---C---------C-------------C-CCcccc-------------------------CC------------------
Confidence 0 0 0 000000 00
Q ss_pred ccccCCCCCcccccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHH
Q 005758 591 TVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGF 670 (678)
Q Consensus 591 ~~~~~~~~~~~~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~ 670 (678)
. ...+.+|.||.+++|+||||+|++|++|++.|||+|.|++..+...++.|+|+|++++|++|+.+|+++
T Consensus 88 ----~------~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 157 (164)
T 2jvz_A 88 ----R------IGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDL 157 (164)
T ss_dssp ----S------CSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHH
T ss_pred ----C------CCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHH
Confidence 0 013467889999999999999999999999999999998665555689999999999999999999999
Q ss_pred Hhccc
Q 005758 671 ILSTQ 675 (678)
Q Consensus 671 i~~~~ 675 (678)
|....
T Consensus 158 i~~~~ 162 (164)
T 2jvz_A 158 LQSLR 162 (164)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 87643
No 2
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.90 E-value=4.5e-24 Score=223.36 Aligned_cols=229 Identities=15% Similarity=0.145 Sum_probs=164.9
Q ss_pred CCCceEEEEEEcccccceecccCc--hhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHH
Q 005758 188 GGNRVATRMVVSRMHVGCLLGKGG--KIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRL 265 (678)
Q Consensus 188 ~~~~~~~~l~vp~~~~g~iIGk~G--~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~ 265 (678)
....+|+++.||..+|++||||+| ++|++|+++|||+|+|+..+.... ......+.|+|+|.+++|++|+.+|.+++
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~-~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGT-TPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSS-SCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCccccc-CCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 367899999999999999999999 999999999999999985420010 01245678999999999999999998743
Q ss_pred hcccccCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC
Q 005758 266 RESQHRDRSHFHGRLHSPDRFFPDDDYVPHMNNTARRPSMDGARFSGSNYRSNNYGPRPSGYSIEAGAAPMSDSVQPFYG 345 (678)
Q Consensus 266 ~e~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 345 (678)
.
T Consensus 105 P------------------------------------------------------------------------------- 105 (376)
T 3n89_A 105 H------------------------------------------------------------------------------- 105 (376)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CceEEEEEeeccccceEEeCCchHHHHHHHHhCCeEEEeCCCC--CCCCcEEEEecCCCCCCcchHHHHHHHHHHHHhhc
Q 005758 346 EDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVD--GSDEQIITISSEEGPDDELFPAQEALLHIQTRIVD 423 (678)
Q Consensus 346 ~~~~~~i~vp~~~vg~IIG~~G~~I~~I~~~tg~~I~i~~~~~--~~~er~v~I~G~~g~~~~~~~a~~~i~~i~~~i~~ 423 (678)
+++.+.+|...+.. ..-+..|.+ ++.++|+|.|+.... +.....|+|+|. ..++..|.+++..+++.+.+
T Consensus 106 --l~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~---~~nv~~akeA~~~Ll~~l~~ 177 (376)
T 3n89_A 106 --FTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAR---EKNQHELIEAAKRLNEILFR 177 (376)
T ss_dssp --EEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEE---GGGHHHHHHHHHHHHHHHCC
T ss_pred --ceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcC---hhhHHHHHHHHHHHHHHHHh
Confidence 22333333322221 111234444 567999999965421 113577999964 56777888888888877765
Q ss_pred cCCCCCCceEEEEeecCCcceeeecCCc--h-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHH
Q 005758 424 LGADKDNIITTRLLVPSSEIGCLEGRDG--S-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVT 500 (678)
Q Consensus 424 ~~~~~~~~~~~~l~VP~~~~g~iIGkgG--~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~ 500 (678)
......+.+++.|.|+.++|.+|||++| . |++|+++|||+|+|+.. ..+.........|+|+|++++|.+|..+|.
T Consensus 178 ~e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~-~d~~d~~~~~~~ItItGs~e~V~~Ark~I~ 256 (376)
T 3n89_A 178 ESPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCY-NNRNETRGNIYEIKVVGNIDNVLKARRYIM 256 (376)
T ss_dssp --CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHH
T ss_pred hhcccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCC-CCcccccCCceEEEEEeCHHHHHHHHHHHH
Confidence 4333457899999999999999999999 4 69999999999998532 221111124568999999999999999999
Q ss_pred HHHHh
Q 005758 501 TRLRS 505 (678)
Q Consensus 501 ~~l~~ 505 (678)
++|-=
T Consensus 257 ~lLPv 261 (376)
T 3n89_A 257 DLLPI 261 (376)
T ss_dssp HTSEE
T ss_pred hhCCE
Confidence 98853
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.89 E-value=2.2e-23 Score=201.01 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=131.9
Q ss_pred CccEEEEEEeeCceeceecccCchhHHhHHhHhCCEEEEccC---CCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHH
Q 005758 76 MVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHEL---IPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFL 152 (678)
Q Consensus 76 ~~~~~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v~~~---~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~ 152 (678)
..+++++|+||.+.+|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|+. +++.+|..+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~-----------~~v~~A~~~ 71 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI-----------EALNAVHGF 71 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECH-----------HHHHHHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCH-----------HHHHHHHHH
Confidence 457999999999999999999999999999999999999753 467899999999963 467788888
Q ss_pred HHHHhhccCCCCCCCCCcccccCCCCCCCCCCcCCCCCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCC
Q 005758 153 IHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDH 232 (678)
Q Consensus 153 i~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~ 232 (678)
|.+.+.+....... ..+.....++........++++|+||..++|+||||+|++|++|+++|||+|+|.+..
T Consensus 72 I~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~- 143 (178)
T 2anr_A 72 IAEKIREMPQNVAK-------TEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP- 143 (178)
T ss_dssp HHHHHTCCCCC------------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-
T ss_pred HHHHHhccCCcccc-------CCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC-
Confidence 88887654321100 0000000000001123457899999999999999999999999999999999998532
Q ss_pred CCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhccc
Q 005758 233 SLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQ 269 (678)
Q Consensus 233 ~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~~ 269 (678)
.+....++.|+|+|+.++|.+|+.+|.+++++++
T Consensus 144 ---~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 144 ---DGINLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp -------CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred ---CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 2223578999999999999999999999999864
No 4
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=5.3e-23 Score=195.40 Aligned_cols=156 Identities=21% Similarity=0.306 Sum_probs=130.3
Q ss_pred cEEEEEEeeCceeceecccCchhHHhHHhHhCCEEEEccC-CCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHHHHHH
Q 005758 78 TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHEL-IPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDR 156 (678)
Q Consensus 78 ~~~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v~~~-~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~i~~~ 156 (678)
+-+++|+||.+.+|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|+. ..+.+|...|.+.
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~-----------e~v~~A~~~I~~~ 70 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPP-----------EAQFKAQGRIYGK 70 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECH-----------HHHHHHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCH-----------HHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999875 678899999999963 4678888888888
Q ss_pred hhccCCCCCCCCCcccccCCCCCCCCCCcCCCCCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCC
Q 005758 157 ILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPR 236 (678)
Q Consensus 157 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~ 236 (678)
+.+..... + ......+++|.||..++|+|||++|++|++|+++|||+|.|+. +..|.
T Consensus 71 ~~e~~~~~-----------~----------~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~--~~~~~ 127 (163)
T 3krm_A 71 LKEENFFG-----------P----------KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR--DQTPD 127 (163)
T ss_dssp HHHTTSSC-----------S----------SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT--TCCCC
T ss_pred Hhcccccc-----------c----------ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC--CCCCC
Confidence 86642110 0 1134578899999999999999999999999999999999974 22343
Q ss_pred ccCCCCceeeccCCHHHHHHHHHHHHHHHhccc
Q 005758 237 CVSMSEEIVQVVGDINNVKNAVAIISSRLRESQ 269 (678)
Q Consensus 237 ~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~~ 269 (678)
...++.|+|+|++++|.+|+.+|.+++++..
T Consensus 128 --~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 158 (163)
T 3krm_A 128 --ENDQVIVKIIGHFYASQMAQRKIRDILAQVK 158 (163)
T ss_dssp --TTSEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred --CCCceEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 1334489999999999999999999998853
No 5
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=4.6e-23 Score=195.20 Aligned_cols=156 Identities=23% Similarity=0.389 Sum_probs=128.5
Q ss_pred CCceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhhh
Q 005758 429 DNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYL 507 (678)
Q Consensus 429 ~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~~~ 507 (678)
+..++++|+||.+++|.||||+|+ |++|+++|||+|+|... ...++.|+|.|++++|.+|+.+|.+++.+.+
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-------~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-------TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-------CCCceEEEEEeCHHHHHHHHHHHHHHHHhhc
Confidence 356889999999999999999999 99999999999999642 1368899999999999999999999887642
Q ss_pred hcccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcccCCCCccccccCcccccC
Q 005758 508 YRDFFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPSKEAAGSVSETVKQNESERRE 587 (678)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 587 (678)
... .+. +...
T Consensus 75 ~~~-----------~~~---------------------------------------------~~~~-------------- 84 (160)
T 2jzx_A 75 SSS-----------MTN---------------------------------------------STAA-------------- 84 (160)
T ss_dssp TSC-----------CCS---------------------------------------------SSCC--------------
T ss_pred ccc-----------CCC---------------------------------------------CccC--------------
Confidence 110 000 0000
Q ss_pred CCcccccCCCCCcccccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEec-CCCCCceeEEEEEcCHHHHHHHHHH
Q 005758 588 DVPTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVE-GQPEGTQKIIQISGTPEQVERAQSV 666 (678)
Q Consensus 588 ~~~~~~~~~~~~~~~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~-~~~~~~~r~I~IsGt~eqv~~Ak~l 666 (678)
.....+.+|.||.+++|+||||+|++|++|++.|||+|+|+. +.+...++.|+|+|++++|++|+.+
T Consensus 85 ------------~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~ 152 (160)
T 2jzx_A 85 ------------SRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQ 152 (160)
T ss_dssp ------------CCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHH
T ss_pred ------------CCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHH
Confidence 001357999999999999999999999999999999999974 2345678999999999999999999
Q ss_pred HHHHHhc
Q 005758 667 LQGFILS 673 (678)
Q Consensus 667 I~~~i~~ 673 (678)
|.+++..
T Consensus 153 I~~~i~e 159 (160)
T 2jzx_A 153 ICVVMLE 159 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998864
No 6
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.88 E-value=3.8e-23 Score=195.83 Aligned_cols=158 Identities=30% Similarity=0.440 Sum_probs=130.7
Q ss_pred CccEEEEEEeeCceeceecccCchhHHhHHhHhCCEEEEccCCCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHHHHH
Q 005758 76 MVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHD 155 (678)
Q Consensus 76 ~~~~~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v~~~~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~i~~ 155 (678)
+.+++++|+||.+.+|.||||+|++|++|+++|||+|+|++. ++.+|+|+|+|+. +.+.+|...|.+
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~-----------~~v~~A~~~I~~ 68 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-----------NAIFKAFAMIID 68 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEH-----------HHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCH-----------HHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999875 6789999999963 467788888888
Q ss_pred HhhccCCCCCCCCCcccccCCCCCCCCCCcCCCCCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCC
Q 005758 156 RILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLP 235 (678)
Q Consensus 156 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p 235 (678)
.+.+...... . ..+ ......++++|.||..++|+||||+|++|++|+++|||+|+|.+ +..|
T Consensus 69 ~i~e~~~~~~-~----~~~-----------~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~--~~~~ 130 (160)
T 2jzx_A 69 KLEEDISSSM-T----NST-----------AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLP 130 (160)
T ss_dssp HHHHHHTSCC-C----SSS-----------CCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC--CCST
T ss_pred HHHhhccccC-C----CCc-----------cCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC--CCCC
Confidence 7766322110 0 000 01134589999999999999999999999999999999999974 2344
Q ss_pred CccCCCCceeeccCCHHHHHHHHHHHHHHHhc
Q 005758 236 RCVSMSEEIVQVVGDINNVKNAVAIISSRLRE 267 (678)
Q Consensus 236 ~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e 267 (678)
. ..++.|+|+|++++|.+|+.+|.+++.|
T Consensus 131 ~---~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 131 N---STERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp T---CCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred C---CCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4 6789999999999999999999999876
No 7
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=191.94 Aligned_cols=153 Identities=22% Similarity=0.369 Sum_probs=124.7
Q ss_pred eEEEEEeeccccceEEeCCchHHHHHHHHhCCeEEEeCC-CCCCCCcEEEEecCCCCCCcchHHHHHHHHHHHHhhccCC
Q 005758 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADP-VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGA 426 (678)
Q Consensus 348 ~~~~i~vp~~~vg~IIG~~G~~I~~I~~~tg~~I~i~~~-~~~~~er~v~I~G~~g~~~~~~~a~~~i~~i~~~i~~~~~ 426 (678)
.+++|+||.+++|.|||++|++|++|+++|||+|+|++. .+++.+|+|+|+|+ .+++.+|...|+.++.......+
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~---~e~v~~A~~~I~~~~~e~~~~~~ 79 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGP---PEAQFKAQGRIYGKLKEENFFGP 79 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEEC---HHHHHHHHHHHHHHHHHTTSSCS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhccccccc
Confidence 578999999999999999999999999999999999875 46788999999974 45566666555544433211122
Q ss_pred CCCCceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHh
Q 005758 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRS 505 (678)
Q Consensus 427 ~~~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~ 505 (678)
......+.+|.||.+++|+||||+|+ |++|+++|||+|++. ++..|.. ..++.|+|+|++++|++|+.+|.+++++
T Consensus 80 ~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~-~~~~~~~--~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 80 KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVP-RDQTPDE--NDQVIVKIIGHFYASQMAQRKIRDILAQ 156 (163)
T ss_dssp SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECC-TTCCCCT--TSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEEC-CCCCCCC--CCceEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999 999999999999984 4555542 3445899999999999999999999987
Q ss_pred h
Q 005758 506 Y 506 (678)
Q Consensus 506 ~ 506 (678)
.
T Consensus 157 ~ 157 (163)
T 3krm_A 157 V 157 (163)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.87 E-value=4.2e-22 Score=189.47 Aligned_cols=158 Identities=26% Similarity=0.403 Sum_probs=127.9
Q ss_pred EEEEEEeeCceeceecccCchhHHhHHhHhCCEEEEccC--CCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHHHHHH
Q 005758 79 TTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHEL--IPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDR 156 (678)
Q Consensus 79 ~~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v~~~--~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~i~~~ 156 (678)
++++|+||.+.+|.||||+|++||+|+++|||+|+|++. .+++.+|+|+|+|+. ..+.+|+..|.+.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~-----------~~v~~A~~~I~~i 70 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP-----------YKVQQACEMVMDI 70 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH-----------HHHHHHHHHHHHH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH-----------HHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999653 346788999999953 4678888888888
Q ss_pred hhccCCCCCCCCCcccccCCCCCCCCCCcCCCCCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCC
Q 005758 157 ILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPR 236 (678)
Q Consensus 157 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~ 236 (678)
+.+.... ++. ....|++ ...++++|.||..++|+||||+|++|++|+++|||+|.|.+.+ +
T Consensus 71 i~e~~~~-~~~--~~~~~~~------------~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~---~- 131 (164)
T 2jvz_A 71 LRERDQG-GFG--DRNEYGS------------RIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---G- 131 (164)
T ss_dssp TTCSSSC-CCS--SCSSCTT------------SCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC---T-
T ss_pred HHhccCC-CCC--CccccCC------------CCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC---C-
Confidence 7664321 110 0011211 1235688999999999999999999999999999999998532 2
Q ss_pred ccCCCCceeeccCCHHHHHHHHHHHHHHHhcc
Q 005758 237 CVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (678)
Q Consensus 237 ~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~ 268 (678)
...++.|+|+|+.++|..|+.+|.+++++.
T Consensus 132 --~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 132 --TGPEKIAHIMGPPDRCEHAARIINDLLQSL 161 (164)
T ss_dssp --TSSEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcEEEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 255799999999999999999999999763
No 9
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.87 E-value=8.2e-23 Score=196.98 Aligned_cols=156 Identities=19% Similarity=0.351 Sum_probs=124.9
Q ss_pred CCceEEEEEeeccccceEEeCCchHHHHHHHHhCCeEEEeCC---CCCCCCcEEEEecCCCCCCcchHHHHHHHHHHHHh
Q 005758 345 GEDLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADP---VDGSDEQIITISSEEGPDDELFPAQEALLHIQTRI 421 (678)
Q Consensus 345 ~~~~~~~i~vp~~~vg~IIG~~G~~I~~I~~~tg~~I~i~~~---~~~~~er~v~I~G~~g~~~~~~~a~~~i~~i~~~i 421 (678)
+.+++++|+||.+++|.|||++|++|++|+++|||+|+|.+. .+++.+|+|+|+|+ .+++.+|..+|..+....
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~---~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT---IEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC---HHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC---HHHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999999999999999999764 25678999999975 456666766665444321
Q ss_pred hccC--------------CCCCCceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEE
Q 005758 422 VDLG--------------ADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIV 486 (678)
Q Consensus 422 ~~~~--------------~~~~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~ 486 (678)
.... ...+...+++|.||.+++|+||||+|+ |++|+++|||+|+|.+....| .+.++.|+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~~v~I~ 156 (178)
T 2anr_A 80 PQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---NLQNRVVTVS 156 (178)
T ss_dssp CCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEEEEE
T ss_pred CCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---CCCceEEEEE
Confidence 1100 012235789999999999999999999 999999999999997543323 3478999999
Q ss_pred ecHHHHHHHHHHHHHHHHhh
Q 005758 487 GEIQAARDALVEVTTRLRSY 506 (678)
Q Consensus 487 G~~~~v~~A~~~I~~~l~~~ 506 (678)
|++++|++|+.+|.++|++.
T Consensus 157 G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 157 GEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999763
No 10
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.87 E-value=2.9e-22 Score=209.70 Aligned_cols=218 Identities=11% Similarity=0.101 Sum_probs=160.3
Q ss_pred CceEEEEEeeccccceEEeCCc--hHHHHHHHHhCCeEEEeCCC-----CCCCCcEEEEecCCCCCCcchHHHHHHHHHH
Q 005758 346 EDLVFRMLCPIDKVGRVIGESE--GIVELLQNEIGVDLKVADPV-----DGSDEQIITISSEEGPDDELFPAQEALLHIQ 418 (678)
Q Consensus 346 ~~~~~~i~vp~~~vg~IIG~~G--~~I~~I~~~tg~~I~i~~~~-----~~~~er~v~I~G~~g~~~~~~~a~~~i~~i~ 418 (678)
..++.++.||.++|+.|||++| ++|++|+++|||+|+|++.. +......|+|+|. .+++.+|..+|..+.
T Consensus 28 ~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~---~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 28 TRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY---FGDVDRARMLMRRNC 104 (376)
T ss_dssp TEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE---HHHHHHHHHHHHHSC
T ss_pred CEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC---HHHHHHHHHHHHhcC
Confidence 6789999999999999999999 99999999999999998754 1134578999964 567787777665421
Q ss_pred HHhhccCCCCCCceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHH
Q 005758 419 TRIVDLGADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALV 497 (678)
Q Consensus 419 ~~i~~~~~~~~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~ 497 (678)
.+++.+.+|...+.. ...+. |.. ++.++++|.+++.... .......|+|+|...+++.|++
T Consensus 105 ------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~---~~~~sd~V~IrG~~~nv~~ake 166 (376)
T 3n89_A 105 ------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEK---NGIVTTYLRITAREKNQHELIE 166 (376)
T ss_dssp ------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEEEEEEEEEGGGHHHHHH
T ss_pred ------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccc---cCCCCCEEEEEcChhhHHHHHH
Confidence 456777777644332 11234 555 6789999998654221 1113567999999998888888
Q ss_pred HHHHHHHhhhhcccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcccCCCCccc
Q 005758 498 EVTTRLRSYLYRDFFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPSKEAAGSVSET 577 (678)
Q Consensus 498 ~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 577 (678)
.+..+|+... +.. .
T Consensus 167 A~~~Ll~~l~-~~e---~-------------------------------------------------------------- 180 (376)
T 3n89_A 167 AAKRLNEILF-RES---P-------------------------------------------------------------- 180 (376)
T ss_dssp HHHHHHHHHC-C-----C--------------------------------------------------------------
T ss_pred HHHHHHHHHH-hhh---c--------------------------------------------------------------
Confidence 8777775521 100 0
Q ss_pred cccCcccccCCCcccccCCCCCcccccEEEEEecCCCcCeeecCCC--chHHHHHHHcCCeEEEecCCC----CCceeEE
Q 005758 578 VKQNESERREDVPTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSK--TLLTRFSEMSGASVSLVEGQP----EGTQKII 651 (678)
Q Consensus 578 ~~~g~~~~~~~~~~~~~~~~~~~~~~~t~~v~VP~~~vg~IIGkgG--~~I~~Ir~~sGA~I~i~~~~~----~~~~r~I 651 (678)
.....++++|.|+.++|.+|||++| ..|++|+++|||+|.+|+..+ ......|
T Consensus 181 ---------------------~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~I 239 (376)
T 3n89_A 181 ---------------------APENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEI 239 (376)
T ss_dssp ---------------------CCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEE
T ss_pred ---------------------ccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEE
Confidence 0002478999999999999999999 456999999999999985432 1235689
Q ss_pred EEEcCHHHHHHHHHHHHHHH
Q 005758 652 QISGTPEQVERAQSVLQGFI 671 (678)
Q Consensus 652 ~IsGt~eqv~~Ak~lI~~~i 671 (678)
+|+|++++|++|+..|++++
T Consensus 240 tItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 240 KVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEESCHHHHHHHHHHHHHTS
T ss_pred EEEeCHHHHHHHHHHHHhhC
Confidence 99999999999999999986
No 11
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.87 E-value=4.4e-22 Score=191.11 Aligned_cols=168 Identities=23% Similarity=0.355 Sum_probs=126.0
Q ss_pred cEEEEEEeeCceeceecccCchhHHhHHhHhCCEEEEccCCCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 005758 78 TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRI 157 (678)
Q Consensus 78 ~~~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v~~~~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~i~~~i 157 (678)
+.+++|+||.+.+|.||||+|++||+|+++|||+|+|++..+++.+|+|+|+|+. +.+.+|+.+|.+.+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~-----------~~v~~A~~~I~~~~ 70 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPP-----------DRAQHAAEIITDLL 70 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECH-----------HHHHHHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCH-----------HHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999876667889999999963 46778888888777
Q ss_pred hccCCCCCCCCCcccccCCCC-CCCCCC-c---CCCCCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCC
Q 005758 158 LESDGGGGFYGEEEEEYGGGG-GVGGGG-F---RGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDH 232 (678)
Q Consensus 158 ~e~~~~~~~~~~~~~~~~~~~-~~~~~~-~---~~~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~ 232 (678)
.+..... +. ..+|.+ +.+.+. . ......++++|.||..++|+||||+|++|++|+++|||+|+|.+..
T Consensus 71 ~~~~~~~-~~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~- 143 (174)
T 1j4w_A 71 RSVQAGN-PG-----GPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP- 143 (174)
T ss_dssp HHHC-----------------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC-
T ss_pred HhcccCC-CC-----CCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC-
Confidence 6643210 00 000000 000000 0 0012356899999999999999999999999999999999998531
Q ss_pred CCCCccCCCCceeeccCCHHHHHHHHHHHHHHH
Q 005758 233 SLPRCVSMSEEIVQVVGDINNVKNAVAIISSRL 265 (678)
Q Consensus 233 ~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~ 265 (678)
+.+..+.++.|+|+|+.++|.+|+.+|.++|
T Consensus 144 --~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 144 --PPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp --TTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred --CCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 2233467899999999999999999998864
No 12
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.86 E-value=1e-21 Score=188.57 Aligned_cols=152 Identities=20% Similarity=0.316 Sum_probs=123.1
Q ss_pred ceEEEEEeeccccceEEeCCchHHHHHHHHhCCeEEEeCCCCCCCCcEEEEecCCCCCCcchHHHHHHHHHHHHhhccCC
Q 005758 347 DLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGA 426 (678)
Q Consensus 347 ~~~~~i~vp~~~vg~IIG~~G~~I~~I~~~tg~~I~i~~~~~~~~er~v~I~G~~g~~~~~~~a~~~i~~i~~~i~~~~~ 426 (678)
..+++|+||.+++|.|||++|++|++|+++|||+|+|.+..+++.+|+|+|+|+ .+++.+|+.+|..+.........
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~---~~~v~~A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP---PDRAQHAAEIITDLLRSVQAGNP 78 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC---HHHHHHHHHHHHHHHHHHC----
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHhcccCCC
Confidence 357899999999999999999999999999999999987656778899999975 56788888877766654421100
Q ss_pred --------------------CCCCceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEE
Q 005758 427 --------------------DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQI 485 (678)
Q Consensus 427 --------------------~~~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I 485 (678)
......+++|.||.+++|+||||+|+ |++|+++|||+|+|.+. . +.+..+.++.|+|
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~-~-~~~~~~~~~~v~I 156 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRN-P-PPNADPNMKLFTI 156 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECC-C-TTTSCTTEEEEEE
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCC-C-CCCCCCCceEEEE
Confidence 01224688999999999999999999 99999999999999642 2 2233457899999
Q ss_pred EecHHHHHHHHHHHHHHH
Q 005758 486 VGEIQAARDALVEVTTRL 503 (678)
Q Consensus 486 ~G~~~~v~~A~~~I~~~l 503 (678)
+|++++|++|+.+|.++|
T Consensus 157 ~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 157 RGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp ECCHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHHhC
Confidence 999999999999998764
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.72 E-value=1.3e-17 Score=153.85 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=104.6
Q ss_pred ceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhhhhc
Q 005758 431 IITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSYLYR 509 (678)
Q Consensus 431 ~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~~~~~ 509 (678)
.++.+|+||.+.+|.+||++|+ |+.|++++|++|...++ ..+..+...++|++|.+|..+ | +
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~--------~~~~~i~~~~~p~~v~~~~~~----l-~---- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE--------DTCTFHIYGEDQDAVKKARSF----L-E---- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET--------TTTEEEEEESSHHHHHHHHHH----H-C----
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC--------CchheeeccCCHHHHHHHHHh----h-h----
Confidence 5788999999999999999999 99999999955443221 134455555678988877542 1 0
Q ss_pred ccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcccCCCCccccccCcccccCCC
Q 005758 510 DFFQKETPPSSTGPTGSALVVEAASPIDITPAREVQTVTDPPAATHQSVQIPATSQPSKEAAGSVSETVKQNESERREDV 589 (678)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 589 (678)
.
T Consensus 66 -~------------------------------------------------------------------------------ 66 (144)
T 2qnd_A 66 -F------------------------------------------------------------------------------ 66 (144)
T ss_dssp -E------------------------------------------------------------------------------
T ss_pred -c------------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccCCCCCcccccEEEEEecCCCcCeeecCCCchHHHHHHHcCC-eEEEecCCCCC---ce--eEEEEEcCHHHHHHH
Q 005758 590 PTVINRVPLPLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGA-SVSLVEGQPEG---TQ--KIIQISGTPEQVERA 663 (678)
Q Consensus 590 ~~~~~~~~~~~~~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA-~I~i~~~~~~~---~~--r~I~IsGt~eqv~~A 663 (678)
...+|.||.+++|.+|||+|+||+.|++.||| +|+|+...+.. .+ ..|+|+|++++|+.|
T Consensus 67 --------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~A 132 (144)
T 2qnd_A 67 --------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANA 132 (144)
T ss_dssp --------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHH
T ss_pred --------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHH
Confidence 02778899999999999999999999999997 99998532211 12 459999999999999
Q ss_pred HHHHHHHHhcc
Q 005758 664 QSVLQGFILST 674 (678)
Q Consensus 664 k~lI~~~i~~~ 674 (678)
+.||++.|.+.
T Consensus 133 k~li~~~l~~l 143 (144)
T 2qnd_A 133 TVLLDYHLNYL 143 (144)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999999764
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.66 E-value=7.3e-17 Score=148.89 Aligned_cols=136 Identities=19% Similarity=0.260 Sum_probs=100.1
Q ss_pred ceEEEEEeeccccceEEeCCchHHHHHHHHhCCeEEEeCCCCCCCCcEEEEecCCCCCCcchHHHHHHHHHHHHhhccCC
Q 005758 347 DLVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLGA 426 (678)
Q Consensus 347 ~~~~~i~vp~~~vg~IIG~~G~~I~~I~~~tg~~I~i~~~~~~~~er~v~I~G~~g~~~~~~~a~~~i~~i~~~i~~~~~ 426 (678)
.++.+|+||.+.+|.+||++|++|++|++++|++|..... +...+++.+. .++.+.+|..+ + +.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~----~~~~~i~~~~--~p~~v~~~~~~----l----~~-- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE----DTCTFHIYGE--DQDAVKKARSF----L----EF-- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET----TTTEEEEEES--SHHHHHHHHHH----H----CE--
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC----CchheeeccC--CHHHHHHHHHh----h----hc--
Confidence 4678999999999999999999999999999955443321 2234555542 12333333221 1 11
Q ss_pred CCCCceEEEEeecCCcceeeecCCch-hHHHHhhcCC-eEEEeccCCCCCCCCCCC--eEEEEEecHHHHHHHHHHHHHH
Q 005758 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGA-NIQILSREEVPACVSGTD--ELVQIVGEIQAARDALVEVTTR 502 (678)
Q Consensus 427 ~~~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga-~I~v~~~~~~p~~~~~~~--~~V~I~G~~~~v~~A~~~I~~~ 502 (678)
...++.||.+++|++|||+|. |+.|++.||| +|+|.+.++... ..++ +.|+|+|++++|+.|+.+|.++
T Consensus 67 -----~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~Ak~li~~~ 139 (144)
T 2qnd_A 67 -----AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIANATVLLDYH 139 (144)
T ss_dssp -----EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred -----ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHHHHHHHHHH
Confidence 138899999999999999999 9999999997 999976543211 1233 3589999999999999999998
Q ss_pred HHh
Q 005758 503 LRS 505 (678)
Q Consensus 503 l~~ 505 (678)
|.+
T Consensus 140 l~~ 142 (144)
T 2qnd_A 140 LNY 142 (144)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
No 15
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.57 E-value=2.4e-15 Score=125.02 Aligned_cols=74 Identities=18% Similarity=0.357 Sum_probs=66.9
Q ss_pred cccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhccc
Q 005758 602 TRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQ 675 (678)
Q Consensus 602 ~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~~ 675 (678)
...+.+|.||.+++|.||||+|++|++|+++|||+|+|.++.++..++.|+|+|++++|++|+.||+++|.+.+
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 77 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC---
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhhh
Confidence 46789999999999999999999999999999999999876667789999999999999999999999997753
No 16
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.56 E-value=5.8e-15 Score=122.61 Aligned_cols=72 Identities=28% Similarity=0.373 Sum_probs=67.2
Q ss_pred cccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhc
Q 005758 602 TRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILS 673 (678)
Q Consensus 602 ~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~ 673 (678)
...+.+|.||.+++|.||||+|++|++|+++|||+|+|+++.++..++.|+|+|++++|++|+.||++++..
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999998776677889999999999999999999999865
No 17
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.55 E-value=2.5e-15 Score=123.02 Aligned_cols=72 Identities=18% Similarity=0.334 Sum_probs=67.8
Q ss_pred ccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhcc
Q 005758 603 RSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILST 674 (678)
Q Consensus 603 ~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~ 674 (678)
..+.+|.||.+++|.|||++|++|++|++.|||+|+|.++.++..++.|+|+|++++|++|+.||++++.++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 578999999999999999999999999999999999998777778999999999999999999999999764
No 18
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.55 E-value=4.4e-15 Score=145.62 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=110.8
Q ss_pred cEEEEEEeeCceeceecccCchhHHhHHhHhCCEEEEccCCCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 005758 78 TTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRI 157 (678)
Q Consensus 78 ~~~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v~~~~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~i~~~i 157 (678)
+....+.||.+.+|.|||++|.+|+.|+++|||+|+|+. +++.|+|.++... .....+++|...|...+
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t------~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKET------EDPLAVWKARDIVLAIG 101 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTC------CSHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCC------CCHHHHHHHHHHHHHHh
Confidence 356689999999999999999999999999999999983 3567899986421 12356778888887766
Q ss_pred hccCCCCCCCCCcccccCCCCCCCCCCcCCCCCceEEEEEEc-----------ccccceecccCchhHHHHHhccCceEE
Q 005758 158 LESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVS-----------RMHVGCLLGKGGKIIEQMRMETKTQIR 226 (678)
Q Consensus 158 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp-----------~~~~g~iIGk~G~~I~~I~~~tg~~I~ 226 (678)
.......+..--. .......+.++ ...+|+||||+|.+|+.|++.|||+|.
T Consensus 102 rg~~~e~g~~ll~------------------dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~ 163 (219)
T 2e3u_A 102 RGFSPERAFRLLN------------------EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVS 163 (219)
T ss_dssp TTCCHHHHGGGGS------------------TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEE
T ss_pred ccCCccccceecc------------------CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEE
Confidence 3211110000000 01111122222 236899999999999999999999999
Q ss_pred EecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhcccc
Q 005758 227 ILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQH 270 (678)
Q Consensus 227 i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~~~ 270 (678)
|. ++.|.|.|+.++|+.|+.+|.+++...+|
T Consensus 164 v~-------------~~~v~i~G~~~~i~~A~~~i~~li~g~~~ 194 (219)
T 2e3u_A 164 VY-------------GKTVAIIGNPIQIEIAKTAIEKLARGSPH 194 (219)
T ss_dssp EE-------------TTEEEEEECHHHHHHHHHHHHHHHTTCCH
T ss_pred EC-------------CeEEEEEeCHHHHHHHHHHHHHHHcCCCc
Confidence 96 46799999999999999999999977543
No 19
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.50 E-value=2.2e-14 Score=140.60 Aligned_cols=139 Identities=15% Similarity=0.201 Sum_probs=106.1
Q ss_pred eEEEEEeeccccceEEeCCchHHHHHHHHhCCeEEEeCCCCCCCCcEEEEecCC--CCCCcchHHHHHHHHHHHH--hh-
Q 005758 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEE--GPDDELFPAQEALLHIQTR--IV- 422 (678)
Q Consensus 348 ~~~~i~vp~~~vg~IIG~~G~~I~~I~~~tg~~I~i~~~~~~~~er~v~I~G~~--g~~~~~~~a~~~i~~i~~~--i~- 422 (678)
...++.||.+.++.|||++|++|+.|+++|||+|+|.. .++.|+|+++. +..+.+.+|.+.|..+..- ..
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~ 108 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPER 108 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccc
Confidence 35689999999999999999999999999999999963 35778998753 2245677777777665510 00
Q ss_pred --ccCCCCCCceEEEEeecC-----------CcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEec
Q 005758 423 --DLGADKDNIITTRLLVPS-----------SEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGE 488 (678)
Q Consensus 423 --~~~~~~~~~~~~~l~VP~-----------~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~ 488 (678)
.+. + +......+.++. ..+|+||||+|+ |+.|++.|||+|.|. ++.|+|.|+
T Consensus 109 g~~ll-~-dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------------~~~v~i~G~ 174 (219)
T 2e3u_A 109 AFRLL-N-EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------------GKTVAIIGN 174 (219)
T ss_dssp HGGGG-S-TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE------------TTEEEEEEC
T ss_pred cceec-c-CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC------------CeEEEEEeC
Confidence 011 1 112222344332 268999999999 999999999999994 347999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005758 489 IQAARDALVEVTTRLRS 505 (678)
Q Consensus 489 ~~~v~~A~~~I~~~l~~ 505 (678)
+++++.|...|++++..
T Consensus 175 ~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999954
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.50 E-value=2.4e-14 Score=117.26 Aligned_cols=71 Identities=20% Similarity=0.427 Sum_probs=63.9
Q ss_pred ccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecC---CCCCceeEEEEEcCHHHHHHHHHHHHHHHhc
Q 005758 603 RSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEG---QPEGTQKIIQISGTPEQVERAQSVLQGFILS 673 (678)
Q Consensus 603 ~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~---~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~ 673 (678)
..+.+|.||.+++|+|||++|++|++|++.|||+|+|++. .++..++.|+|+|++++|++|+.+|+++|..
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999999999999999853 2456789999999999999999999999865
No 21
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.50 E-value=1.8e-14 Score=122.33 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=68.3
Q ss_pred ccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhcccc
Q 005758 603 RSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQD 676 (678)
Q Consensus 603 ~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~~~ 676 (678)
.++.+|.||.+++|.||||+|++|++|+++|||+|+|.+..++..++.|+|+|++++|++|+.||+++|...+.
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 57899999999999999999999999999999999998766667789999999999999999999999987654
No 22
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.48 E-value=1.6e-14 Score=121.86 Aligned_cols=72 Identities=28% Similarity=0.373 Sum_probs=67.2
Q ss_pred cccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhc
Q 005758 602 TRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILS 673 (678)
Q Consensus 602 ~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~ 673 (678)
...+.+|.||.+++|.||||+|++|++|+++|||+|+|+++.++..++.|+|+|++++|++|+.||+++|..
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999998776677889999999999999999999999865
No 23
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=8.6e-14 Score=120.80 Aligned_cols=72 Identities=21% Similarity=0.456 Sum_probs=65.2
Q ss_pred cEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhccc
Q 005758 604 STLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQ 675 (678)
Q Consensus 604 ~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~~ 675 (678)
.+.+|.||.++++.||||+|++|++|+++|||+|+|.+..+...+|.|+|+|++++|++|+.||+++|....
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 468999999999999999999999999999999999865555678999999999999999999999987643
No 24
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.45 E-value=3.8e-14 Score=119.13 Aligned_cols=73 Identities=21% Similarity=0.434 Sum_probs=65.8
Q ss_pred ccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecC---CCCCceeEEEEEcCHHHHHHHHHHHHHHHhccc
Q 005758 603 RSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEG---QPEGTQKIIQISGTPEQVERAQSVLQGFILSTQ 675 (678)
Q Consensus 603 ~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~---~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~~ 675 (678)
..+.+|.||.+++|+|||++|++|++|++.|||+|+|++. .+++.++.|+|+|++++|++|+.||+++|....
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 3678999999999999999999999999999999999864 245678999999999999999999999997643
No 25
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.44 E-value=5.6e-14 Score=113.80 Aligned_cols=69 Identities=20% Similarity=0.359 Sum_probs=64.0
Q ss_pred ccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhc
Q 005758 603 RSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILS 673 (678)
Q Consensus 603 ~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~ 673 (678)
.++.+|.||.+++|.|||++|++|++|+++|||+|+|+++ +..+|.|+|+|++++|++|+.+|.++|..
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999754 46789999999999999999999999865
No 26
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=119.42 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=64.0
Q ss_pred ccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCC---CCCceeEEEEEcCHHHHHHHHHHHHHHHhcc
Q 005758 603 RSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQ---PEGTQKIIQISGTPEQVERAQSVLQGFILST 674 (678)
Q Consensus 603 ~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~---~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~ 674 (678)
..+.+|.||.+++++||||+|++|++|+++|||+|+|.+.. .+..++.|+|+|++++|++|+.||+++|...
T Consensus 6 g~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 6 GGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp -CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred CCeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 34789999999999999999999999999999999998643 2346799999999999999999999998754
No 27
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=2.8e-13 Score=115.30 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=65.2
Q ss_pred ccccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhcccc
Q 005758 601 VTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQD 676 (678)
Q Consensus 601 ~~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~~~ 676 (678)
.++++.+|.||.++||.|||+||.+|++|+++|||+|+|+++ +..++.|+|+|++++|++|+.+|++++....+
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~--~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP--DDPSNQIKITGTKEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT--TSSCCEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC--CCCCCeEEEEECHHHHHHHHHHHHHHhhcccc
Confidence 357899999999999999999999999999999999999643 23357899999999999999999999876443
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.40 E-value=4.1e-13 Score=112.19 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=63.2
Q ss_pred ccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCC--CCceeEEEEEcCHHHHHHHHHHHHHHHh
Q 005758 603 RSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQP--EGTQKIIQISGTPEQVERAQSVLQGFIL 672 (678)
Q Consensus 603 ~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~--~~~~r~I~IsGt~eqv~~Ak~lI~~~i~ 672 (678)
..+.+|.||.+++|.||||+|++|++|+++|||+|.|.+... ...+|.|+|+|+++++++|+.+|++++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999986432 4568899999999999999999999875
No 29
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=9.5e-14 Score=114.82 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=61.6
Q ss_pred cccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhc
Q 005758 602 TRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILS 673 (678)
Q Consensus 602 ~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~ 673 (678)
...+.+|.||.++||+||||+|++|++|+++|||+|+|+.. .+++.|+|+|++++|++|+.+|++.+..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~---~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR---DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS---SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC---CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999642 2357899999999999999999997643
No 30
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.38 E-value=2.4e-13 Score=115.81 Aligned_cols=73 Identities=21% Similarity=0.438 Sum_probs=65.5
Q ss_pred cccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCC--CCceeEEEEEcCHHHHHHHHHHHHHHHhcc
Q 005758 602 TRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQP--EGTQKIIQISGTPEQVERAQSVLQGFILST 674 (678)
Q Consensus 602 ~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~--~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~ 674 (678)
...+.+|.||.+++|.||||+|++|++|+++|||+|+|.+..+ ...+|.|+|+|++++|++|+.||+++|...
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3578999999999999999999999999999999999986432 336899999999999999999999999764
No 31
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.37 E-value=5.2e-13 Score=115.98 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=64.4
Q ss_pred ccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCC--CceeEEEEEcCHHHHHHHHHHHHHHHhcc
Q 005758 603 RSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPE--GTQKIIQISGTPEQVERAQSVLQGFILST 674 (678)
Q Consensus 603 ~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~--~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~ 674 (678)
..+.+|.||.+++|.||||+|++|++|+++|||+|+|.+..+. ..++.|+|+|++++|++|+.||+++|...
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 4689999999999999999999999999999999999764332 25899999999999999999999999654
No 32
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=8.1e-13 Score=112.45 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=64.3
Q ss_pred cccccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhc
Q 005758 600 LVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILS 673 (678)
Q Consensus 600 ~~~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~ 673 (678)
+...++.+|.||.++|+.|||++|++|++|+++|||+|+|++.. ....+.|+|+|++++|++|+.+|++++..
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999997532 23467899999999999999999998854
No 33
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.36 E-value=5.3e-13 Score=127.49 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=109.6
Q ss_pred EEEEEeeCceeceecccCchhHHhHHhHhCCEEEEccCCCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHHHHHHhhc
Q 005758 80 TYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILE 159 (678)
Q Consensus 80 ~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v~~~~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~i~~~i~e 159 (678)
.++++||...+|.|||++|++++.|++++|++|.++. .++.|+|..+... .....+++|...|......
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t------~dp~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEG------IPPVNLMKAAEVVKAISLG 73 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTT------SCHHHHHHHHHHHHHHHHT
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCC------CCHHHHHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999974 4678888854321 1234677888887665543
Q ss_pred cCCCCCCCCCcccccCCCCCCCCCCcCCCCCceEE-EEEEc----------ccccceecccCchhHHHHHhccCceEEEe
Q 005758 160 SDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVAT-RMVVS----------RMHVGCLLGKGGKIIEQMRMETKTQIRIL 228 (678)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~vp----------~~~~g~iIGk~G~~I~~I~~~tg~~I~i~ 228 (678)
...... ... ..+...+ .+.++ ....|+|||++|.+++.|++.|||+|.|.
T Consensus 74 f~~e~A------~~L-------------l~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~ 134 (191)
T 1tua_A 74 FPPEKA------FRL-------------LEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG 134 (191)
T ss_dssp CCHHHH------GGG-------------GSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC
T ss_pred CCHHHh------hhc-------------ccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc
Confidence 211000 000 0112222 23344 23589999999999999999999999996
Q ss_pred cCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhcccc
Q 005758 229 PRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQH 270 (678)
Q Consensus 229 ~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~~~ 270 (678)
+..|.|.|+.++++.|+..|.+++...+|
T Consensus 135 -------------~~~v~i~G~~~~i~~Ar~~i~~li~g~~h 163 (191)
T 1tua_A 135 -------------EYEVAIIGDYERAMAAKQAIEMLAEGRMH 163 (191)
T ss_dssp -------------SSEEEEEEEHHHHHHHHHHHHHHHTTCCH
T ss_pred -------------CCEEEEEeChHHHHHHHHHHHHHHcCCCc
Confidence 34799999999999999999999976543
No 34
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.36 E-value=4.5e-13 Score=107.76 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=61.0
Q ss_pred ccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHH
Q 005758 603 RSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFI 671 (678)
Q Consensus 603 ~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i 671 (678)
..+.+|.||.++||.|||++|++|++|+++|||+|+|+++ +..++.|+|+|+++++++|+.+|++++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~--g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD--SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC--CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC--CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999753 346789999999999999999998864
No 35
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=1.3e-12 Score=111.66 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=64.2
Q ss_pred cccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCC-CCceeEEEEEcCHHHHHHHHHHHHHHHhc
Q 005758 602 TRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQP-EGTQKIIQISGTPEQVERAQSVLQGFILS 673 (678)
Q Consensus 602 ~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~-~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~ 673 (678)
..++.+|.||.++|+.|||++|++|++|+++|||+|+|++... ...++.|+|+|+++++++|+.+|+.++..
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999975432 23568999999999999999999998864
No 36
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.33 E-value=1e-12 Score=106.35 Aligned_cols=70 Identities=29% Similarity=0.504 Sum_probs=64.4
Q ss_pred CceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhc
Q 005758 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRE 267 (678)
Q Consensus 190 ~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e 267 (678)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+. ...+|.|+|+|++++|.+|+.+|.+++++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999852 14589999999999999999999999986
No 37
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.32 E-value=1.6e-12 Score=106.31 Aligned_cols=74 Identities=28% Similarity=0.402 Sum_probs=64.6
Q ss_pred ceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhc
Q 005758 191 RVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRE 267 (678)
Q Consensus 191 ~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e 267 (678)
.++++|.||..++|+|||++|++|++|+++|||+|+|.+.++..|. ..++.|+|+|++++|.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~---~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG---TRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTT---CCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCC---CceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3588999999999999999999999999999999999864333333 6789999999999999999999998764
No 38
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.31 E-value=4.2e-12 Score=105.25 Aligned_cols=72 Identities=25% Similarity=0.513 Sum_probs=63.9
Q ss_pred CceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 005758 430 NIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (678)
Q Consensus 430 ~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~~ 506 (678)
..++.+|.||.+++|+||||+|+ |++|+++|||+|++.. ..| .+.++.|+|+|+++++++|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC--TTS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC--CCC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999 9999999999999953 222 347899999999999999999999999774
No 39
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.31 E-value=2.2e-12 Score=123.19 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=105.4
Q ss_pred EEEEeeccccceEEeCCchHHHHHHHHhCCeEEEeCCCCCCCCcEEEEecCC--CCCCcchHHHHHHHHHHHHhh--ccC
Q 005758 350 FRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEE--GPDDELFPAQEALLHIQTRIV--DLG 425 (678)
Q Consensus 350 ~~i~vp~~~vg~IIG~~G~~I~~I~~~tg~~I~i~~~~~~~~er~v~I~G~~--g~~~~~~~a~~~i~~i~~~i~--~~~ 425 (678)
.++.||.+.+|.|||++|++++.|++.+|++|.+.. .++.++|+.+. +....+.+|.+.|..+..-.. +..
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~ 80 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAF 80 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHG
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhh
Confidence 689999999999999999999999999999999964 46788887442 334567778777765543111 000
Q ss_pred C-CCCCceEEEEeec----------CCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHH
Q 005758 426 A-DKDNIITTRLLVP----------SSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAAR 493 (678)
Q Consensus 426 ~-~~~~~~~~~l~VP----------~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~ 493 (678)
. -.+..+...|.++ ....|+||||+|. |+.|+..|||+|.|. +..|.|.|++++++
T Consensus 81 ~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~~~v~i~G~~~~i~ 148 (191)
T 1tua_A 81 RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------EYEVAIIGDYERAM 148 (191)
T ss_dssp GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------SSEEEEEEEHHHHH
T ss_pred hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------CCEEEEEeChHHHH
Confidence 0 0122233344444 2368999999999 999999999999993 34799999999999
Q ss_pred HHHHHHHHHHHh
Q 005758 494 DALVEVTTRLRS 505 (678)
Q Consensus 494 ~A~~~I~~~l~~ 505 (678)
.|...|+.++..
T Consensus 149 ~Ar~~i~~li~g 160 (191)
T 1tua_A 149 AAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 999999988853
No 40
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.30 E-value=1.7e-12 Score=106.08 Aligned_cols=71 Identities=32% Similarity=0.541 Sum_probs=63.2
Q ss_pred CceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHh
Q 005758 430 NIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRS 505 (678)
Q Consensus 430 ~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~ 505 (678)
..++.+|.||.+++|+||||+|+ |++|+++|||+|++.+ . +..+.++.|+|+|+++++++|+.+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN--P---VEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC--C---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC--C---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 46889999999999999999999 9999999999999953 2 2245799999999999999999999998864
No 41
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=6.1e-12 Score=108.32 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=60.6
Q ss_pred cEEEEEecCCCcCeeecCCCchHHHHHHH-cCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhccc
Q 005758 604 STLEVVLPDYAVPKLITKSKTLLTRFSEM-SGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQ 675 (678)
Q Consensus 604 ~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~-sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~~ 675 (678)
.|.+|.||.++|++|||++|++|++|+++ ++++|.|++ .++.|+|+|++++|++|+..|+.++....
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999997 489999965 35689999999999999999999986543
No 42
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=4.9e-12 Score=104.92 Aligned_cols=74 Identities=27% Similarity=0.406 Sum_probs=65.0
Q ss_pred CccEEEEEEeeCceeceecccCchhHHhHHhHhCCEEEEccCCCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHHHHH
Q 005758 76 MVTTTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHD 155 (678)
Q Consensus 76 ~~~~~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v~~~~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~i~~ 155 (678)
+..++++|+||.+.+|.||||+|++|++|+++|||+|+|++..++..+|.|+|+|+. +++.+|..+|.+
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~-----------~~v~~A~~~I~~ 71 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSA-----------ASISLAQYLINA 71 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECH-----------HHHHHHHHHHHH
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCH-----------HHHHHHHHHHHH
Confidence 446899999999999999999999999999999999999987778899999999963 468889999988
Q ss_pred Hhhcc
Q 005758 156 RILES 160 (678)
Q Consensus 156 ~i~e~ 160 (678)
.+.+.
T Consensus 72 ~i~~~ 76 (82)
T 1wvn_A 72 RLSSE 76 (82)
T ss_dssp HTC--
T ss_pred HHHhh
Confidence 88654
No 43
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=3.3e-12 Score=107.18 Aligned_cols=75 Identities=28% Similarity=0.390 Sum_probs=66.4
Q ss_pred eEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhccc
Q 005758 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRESQ 269 (678)
Q Consensus 192 ~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~~ 269 (678)
++++|.||..++|+|||++|++|++|+++|||+|.|.+.++..|. ..++.|+|+|++++|..|+.+|.+++.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g---~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG---TRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTT---SCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCC---CCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 588999999999999999999999999999999999864333343 578999999999999999999999998753
No 44
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=4.6e-12 Score=109.63 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=62.3
Q ss_pred ccEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhc
Q 005758 603 RSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILS 673 (678)
Q Consensus 603 ~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~ 673 (678)
+.+.+|.||.++||.|||+||++|++|+++|||+|+|+++ +...+.|+|+|+++++++|+.+|++++..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~--g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP--ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT--TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC--CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999753 33456999999999999999999998854
No 45
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=4.6e-12 Score=107.53 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=66.4
Q ss_pred CcccccEEEEEecCCCcCeeecCCCchHHHHHHHc-CCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHhccc
Q 005758 599 PLVTRSTLEVVLPDYAVPKLITKSKTLLTRFSEMS-GASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFILSTQ 675 (678)
Q Consensus 599 ~~~~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~s-GA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~~~~ 675 (678)
.+.+..+.+|.||.++|+.|||++|.+|++|.++| ||+|+|++ ++...+.|+|+|+.++|++|+.+|++++....
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~--~g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV--EGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC--TTTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 44467899999999999999999999999999999 99999964 44566799999999999999999999986543
No 46
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.26 E-value=4.2e-12 Score=106.99 Aligned_cols=74 Identities=24% Similarity=0.507 Sum_probs=66.7
Q ss_pred CCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhcc
Q 005758 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (678)
Q Consensus 189 ~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~ 268 (678)
...++++|.||.+++++||||+|++|++|+++|||+|+|... .|. ..++.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~~~---~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEG---SEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---CSS---SSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC---CCC---CCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 567899999999999999999999999999999999999742 232 57899999999999999999999999874
No 47
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.6e-12 Score=105.30 Aligned_cols=70 Identities=26% Similarity=0.319 Sum_probs=63.4
Q ss_pred CCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhc
Q 005758 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRE 267 (678)
Q Consensus 189 ~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e 267 (678)
...++++|.||.+++|+||||+|++|++|+++|||+|+|++. ..++.|+|+|++++|++|+.+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~---------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR---------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS---------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC---------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999999999999999999753 2368899999999999999999998765
No 48
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=102.56 Aligned_cols=72 Identities=18% Similarity=0.413 Sum_probs=62.4
Q ss_pred CceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHH
Q 005758 430 NIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLR 504 (678)
Q Consensus 430 ~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~ 504 (678)
...+.+|.||.+++|+||||+|+ ||+|+++|||+|++.. +..+ ..+.+|.|+|+|+++++++|+.+|.++++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~-~~~~--~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ-DGSQ--NTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECS-SSCS--STTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcC-CCCC--CCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999 9999999999999964 3221 13578999999999999999999998875
No 49
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.23 E-value=1.6e-11 Score=104.12 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=66.6
Q ss_pred CCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhcc
Q 005758 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (678)
Q Consensus 189 ~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~ 268 (678)
...++++|.||..++++||||+|++|++|+++|||+|+|.+.. + ...++.|+|+|+.++|++|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---G---GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999997531 2 256899999999999999999999999885
No 50
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.20 E-value=1.7e-11 Score=104.33 Aligned_cols=76 Identities=16% Similarity=0.378 Sum_probs=66.8
Q ss_pred CCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhcc
Q 005758 189 GNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (678)
Q Consensus 189 ~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~ 268 (678)
...++++|+||..++++||||+|++|++|+++|||+|.|..... + ....++.|+|+|++++|++|+.+|.+++.+.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~--~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP--Q--NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC--C--SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCC--C--CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 56789999999999999999999999999999999999975321 1 1246899999999999999999999999874
No 51
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=3.2e-11 Score=102.57 Aligned_cols=77 Identities=10% Similarity=0.201 Sum_probs=66.6
Q ss_pred CCCCCceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHH
Q 005758 426 ADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLR 504 (678)
Q Consensus 426 ~~~~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~ 504 (678)
.+.+..+++.|.||.+++++|||++|+ |++|+++|||+|+|+. +. ..+++.|+|+|.+++|++|+.+|..++.
T Consensus 11 ~~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~-~g-----~~~~~~V~I~G~~e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 11 GELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQ-SG-----APDPNCVTVTGLPENVEEAIDHILNLEE 84 (95)
T ss_dssp CCTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCC-TT-----CSCTTEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HhhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecC-CC-----CCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999 9999999999999853 21 1246789999999999999999999998
Q ss_pred hhhh
Q 005758 505 SYLY 508 (678)
Q Consensus 505 ~~~~ 508 (678)
++..
T Consensus 85 e~~~ 88 (95)
T 2ctm_A 85 EYLA 88 (95)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8653
No 52
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=2.5e-11 Score=105.82 Aligned_cols=73 Identities=14% Similarity=0.306 Sum_probs=63.9
Q ss_pred EEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhcc
Q 005758 193 ATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (678)
Q Consensus 193 ~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~ 268 (678)
+++|+||.+++++||||+|++|++|+++|||+|+|.... .+. ....++.|+|+|+.++|++|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~--~~~-~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL--PPN-GDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC--CTT-CCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc--CCC-CCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999997532 121 2246799999999999999999999999875
No 53
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=3.6e-11 Score=104.22 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=61.5
Q ss_pred ceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 005758 431 IITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (678)
Q Consensus 431 ~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~~ 506 (678)
..+++|.||.+++++||||+|+ ||+|+++|||+|+|.+++ + ...+|.|+|+|+++++++|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3478999999999999999999 999999999999996432 1 236889999999999999999999998774
No 54
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.17 E-value=6.4e-11 Score=102.73 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=64.3
Q ss_pred CCceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 005758 429 DNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (678)
Q Consensus 429 ~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~~ 506 (678)
....+++|.||.+++|+||||+|+ |++|+++|||+|+|.+... + + ...++.|+|+|+.+++++|+.+|.+++.+.
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~-~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G-T-LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C-S-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C-C-CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 346889999999999999999999 9999999999999964321 1 1 235899999999999999999999999764
No 55
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=4.5e-11 Score=101.66 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=64.3
Q ss_pred CCCCceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHh
Q 005758 427 DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRS 505 (678)
Q Consensus 427 ~~~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~ 505 (678)
..+..++.+|.||.++++.|||+||+ ||+|+++|||+|+|++.+ ..++.|+|+|+++++++|+.+|.+++.+
T Consensus 12 ~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 12 RLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAE 84 (94)
T ss_dssp CCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhc
Confidence 45667999999999999999999999 999999999999995321 1357899999999999999999999877
Q ss_pred h
Q 005758 506 Y 506 (678)
Q Consensus 506 ~ 506 (678)
.
T Consensus 85 ~ 85 (94)
T 2cte_A 85 Q 85 (94)
T ss_dssp H
T ss_pred c
Confidence 4
No 56
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.15 E-value=2.2e-11 Score=97.78 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=60.4
Q ss_pred CceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHH
Q 005758 190 NRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRL 265 (678)
Q Consensus 190 ~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~ 265 (678)
...+..|.||..+++.|||++|++|++|+++|||+|.|++.. ..++.|+|+|+.++|++|+.+|..++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g--------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC--------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC--------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999997521 24679999999999999999998764
No 57
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=8.4e-11 Score=100.40 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=63.2
Q ss_pred CceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCCeEEEEEecHHHHHHHHHHHHHHHHhh
Q 005758 430 NIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTDELVQIVGEIQAARDALVEVTTRLRSY 506 (678)
Q Consensus 430 ~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~l~~~ 506 (678)
+.++++|.||.++++.|||++|+ |++|+++|||+|+|++ +..|. ..++.|+|+|+++++++|+.+|..++.+.
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~-~g~~~---~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPD-KDDGN---QPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCC-TTTCS---SCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecC-CCCCC---CCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999 9999999999999954 32221 26789999999999999999999988763
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.99 E-value=3e-10 Score=98.21 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=62.5
Q ss_pred ceEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhcc
Q 005758 191 RVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (678)
Q Consensus 191 ~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~ 268 (678)
.++..|.||..++++|||++|++|++|+++|||+|.|+... ...+.|+|+|..++|++|+.+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g--------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE--------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT--------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC--------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 47899999999999999999999999999999999997421 23468999999999999999999999773
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.98 E-value=3.9e-10 Score=95.62 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=65.2
Q ss_pred CCCceEEEEEEcccccceecccCchhHHHHHhcc-CceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHh
Q 005758 188 GGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMET-KTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLR 266 (678)
Q Consensus 188 ~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~t-g~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~ 266 (678)
.++.++..|.||..+++.|||++|++|++|+++| ||+|.|+... +..+.|+|+|+.++|++|+.+|..++.
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g--------~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG--------SGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT--------TTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC--------CCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 3677899999999999999999999999999999 9999997421 346789999999999999999999998
Q ss_pred cc
Q 005758 267 ES 268 (678)
Q Consensus 267 e~ 268 (678)
+.
T Consensus 85 e~ 86 (95)
T 2ctj_A 85 EK 86 (95)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=6.4e-10 Score=95.66 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=61.0
Q ss_pred ceEEEEEEcccccceecccCchhHHHHHhc-cCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhcc
Q 005758 191 RVATRMVVSRMHVGCLLGKGGKIIEQMRME-TKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (678)
Q Consensus 191 ~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~-tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~ 268 (678)
.++.+|.||..+|++|||++|++|++|+++ ++++|+|+. .++.|+|+|+++.|.+|+.+|..++++.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 589999963 3678999999999999999999999874
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.87 E-value=5.9e-10 Score=92.68 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=58.0
Q ss_pred cccEEEEEecCCCcCeeecCCCchHHHHHHHcCCe-EEEecCCCCCceeEEEEEc-CHHHHHHHHHHHHHHH
Q 005758 602 TRSTLEVVLPDYAVPKLITKSKTLLTRFSEMSGAS-VSLVEGQPEGTQKIIQISG-TPEQVERAQSVLQGFI 671 (678)
Q Consensus 602 ~~~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~-I~i~~~~~~~~~r~I~IsG-t~eqv~~Ak~lI~~~i 671 (678)
..++.++.||.+++|.|||++|.+|++|+++|||+ |+|.+ ++..|+|.| +.+++++|+.+|+...
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 46889999999999999999999999999999998 99953 236899999 8999999999996543
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=8e-08 Score=79.83 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=58.9
Q ss_pred CCCceEEEEEEcccccceecccCchhHHHHHhccCce-EEEecCCCCCCCccCCCCceeeccC-CHHHHHHHHHHHHHHH
Q 005758 188 GGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQ-IRILPRDHSLPRCVSMSEEIVQVVG-DINNVKNAVAIISSRL 265 (678)
Q Consensus 188 ~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~-I~i~~~~~~~p~~~~~~~~~V~I~G-~~~~v~~A~~~I~~~~ 265 (678)
....+...|.||..+++.+||++|++|++|+++||++ |.|.. .+..|+|.| +.+++++|+.+|..+.
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----------ddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----------DTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----------CCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 3567899999999999999999999999999999998 99962 258899999 6999999999887543
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.45 E-value=3.3e-07 Score=82.21 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=59.9
Q ss_pred cccEEEEEecCC------CcCeeecCCCchHHHHHHHcCCeEEEecCC----------------CCCceeEEEEEc-CHH
Q 005758 602 TRSTLEVVLPDY------AVPKLITKSKTLLTRFSEMSGASVSLVEGQ----------------PEGTQKIIQISG-TPE 658 (678)
Q Consensus 602 ~~~t~~v~VP~~------~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~----------------~~~~~r~I~IsG-t~e 658 (678)
...+..|.||.+ ++|.|||.+|.+|++|+++|||+|.|.... .....-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 467899999998 778999999999999999999999997421 011234688999 599
Q ss_pred HHHHHHHHHHHHHhc
Q 005758 659 QVERAQSVLQGFILS 673 (678)
Q Consensus 659 qv~~Ak~lI~~~i~~ 673 (678)
.+++|+.+|+.++..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999864
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=7.8e-07 Score=78.10 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=59.9
Q ss_pred CCceEEEEEEccc-------ccceecccCchhHHHHHhccCceEEEecCCCCC----CCccCCCCceeeccCC-HHHHHH
Q 005758 189 GNRVATRMVVSRM-------HVGCLLGKGGKIIEQMRMETKTQIRILPRDHSL----PRCVSMSEEIVQVVGD-INNVKN 256 (678)
Q Consensus 189 ~~~~~~~l~vp~~-------~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~----p~~~~~~~~~V~I~G~-~~~v~~ 256 (678)
-..++.+|.||-. +++.|||++|.+|++|+++|||+|.|..+.... .......+-.|.|.+. .+++++
T Consensus 9 ~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~ 88 (119)
T 2yqr_A 9 MHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAA 88 (119)
T ss_dssp CSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHH
T ss_pred eeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHH
Confidence 3467888988865 678999999999999999999999997432110 0001123346888875 899999
Q ss_pred HHHHHHHHHhc
Q 005758 257 AVAIISSRLRE 267 (678)
Q Consensus 257 A~~~I~~~~~e 267 (678)
|+.+|..++.+
T Consensus 89 A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 89 AKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999999976
No 65
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=5.8e-07 Score=78.91 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=56.0
Q ss_pred ccEEEEEecCC-------CcCeeecCCCchHHHHHHHcCCeEEEecCCC----------CCceeEEEEEc-CHHHHHHHH
Q 005758 603 RSTLEVVLPDY-------AVPKLITKSKTLLTRFSEMSGASVSLVEGQP----------EGTQKIIQISG-TPEQVERAQ 664 (678)
Q Consensus 603 ~~t~~v~VP~~-------~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~----------~~~~r~I~IsG-t~eqv~~Ak 664 (678)
..+..|.||.+ ++|.|||.+|.+|++|+++|||+|.|..... ....-.|.|++ +++++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 35677777764 7889999999999999999999999962100 01223566765 599999999
Q ss_pred HHHHHHHhccc
Q 005758 665 SVLQGFILSTQ 675 (678)
Q Consensus 665 ~lI~~~i~~~~ 675 (678)
.||++++...+
T Consensus 91 ~~Ie~Ll~~v~ 101 (119)
T 2yqr_A 91 KLCENLLQTVH 101 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhchH
Confidence 99999987644
No 66
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.31 E-value=1.1e-06 Score=78.71 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=62.3
Q ss_pred CceEEEEEEccc------ccceecccCchhHHHHHhccCceEEEecCCCCC----------CCccCCCCceeeccCC-HH
Q 005758 190 NRVATRMVVSRM------HVGCLLGKGGKIIEQMRMETKTQIRILPRDHSL----------PRCVSMSEEIVQVVGD-IN 252 (678)
Q Consensus 190 ~~~~~~l~vp~~------~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~----------p~~~~~~~~~V~I~G~-~~ 252 (678)
..++.+|.||.. ++|.|||++|.+||+|+++|||+|.|..+.... +......+-.|.|+++ .+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 468999999988 788999999999999999999999997632110 0001123456889996 89
Q ss_pred HHHHHHHHHHHHHhcc
Q 005758 253 NVKNAVAIISSRLRES 268 (678)
Q Consensus 253 ~v~~A~~~I~~~~~e~ 268 (678)
++.+|+.+|..++.+.
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999773
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.87 E-value=8e-06 Score=73.52 Aligned_cols=72 Identities=8% Similarity=0.160 Sum_probs=54.8
Q ss_pred EEEEEecCCC------cCeeecCCCchHHHHHHHcCCeEEEecCCCC-----------------Cce-eEEEEEcC-HH-
Q 005758 605 TLEVVLPDYA------VPKLITKSKTLLTRFSEMSGASVSLVEGQPE-----------------GTQ-KIIQISGT-PE- 658 (678)
Q Consensus 605 t~~v~VP~~~------vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~-----------------~~~-r~I~IsGt-~e- 658 (678)
+..|.||.+. +|.|||.+|.++++|+++|||+|.|-..... .++ --|.|++. ++
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 5677777644 8999999999999999999999999742100 011 26889984 43
Q ss_pred ----HHHHHHHHHHHHHhcccc
Q 005758 659 ----QVERAQSVLQGFILSTQD 676 (678)
Q Consensus 659 ----qv~~Ak~lI~~~i~~~~~ 676 (678)
.+++|+.+|+.++....|
T Consensus 83 ~~~~~l~~A~~~I~~lL~p~~e 104 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLLVPAAE 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSS
T ss_pred hHHHHHHHHHHHHHHHCCCCCc
Confidence 899999999999876543
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.83 E-value=6.9e-06 Score=73.94 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=55.4
Q ss_pred eEEEEEEccc------ccceecccCchhHHHHHhccCceEEEecCCCCC-----------CCccCCCC-ceeeccCC-H-
Q 005758 192 VATRMVVSRM------HVGCLLGKGGKIIEQMRMETKTQIRILPRDHSL-----------PRCVSMSE-EIVQVVGD-I- 251 (678)
Q Consensus 192 ~~~~l~vp~~------~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~-----------p~~~~~~~-~~V~I~G~-~- 251 (678)
++.+|.||-+ ++|.|||++|.++|+|+++|||+|.|..+.... |......+ =.|.|+++ .
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 5678888854 489999999999999999999999998643211 11111112 25788885 3
Q ss_pred ----HHHHHHHHHHHHHHhc
Q 005758 252 ----NNVKNAVAIISSRLRE 267 (678)
Q Consensus 252 ----~~v~~A~~~I~~~~~e 267 (678)
..+.+|+.+|..++..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 3789999999998864
No 69
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.77 E-value=3.8e-05 Score=67.55 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=59.4
Q ss_pred EEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHHHHh
Q 005758 606 LEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQGFIL 672 (678)
Q Consensus 606 ~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~~i~ 672 (678)
..+.|.++.++.|+|++|+.|..|++.|.+.|+|..-.+ ++...|+|.|++..-..|+.||+.+..
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999985533 467789999999999999999988764
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.67 E-value=2.9e-05 Score=87.39 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCcccccCCCCCCCCCCcCCCCCceEEEEEEcccccceecccCchhHHHHHhccCc
Q 005758 144 SPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKT 223 (678)
Q Consensus 144 ~~~~~a~~~i~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~ 223 (678)
..|.++...|++.+.+.-.... .+-.+|. .....|.||...++.|||++|++|+.|+++|||
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~---~~~~~~a---------------p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~ 598 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPR---ASRKENG---------------PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGV 598 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCC---SSCCTTC---------------CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhhcccC---------------CeEEEEEeChhHhheeECCCChhHHHHHHHHCC
Confidence 4556666667766665443221 1222333 357889999999999999999999999999999
Q ss_pred eEEEecCCCCCCCccCCCCceeeccCC-HHHHHHHHHHHHHHH
Q 005758 224 QIRILPRDHSLPRCVSMSEEIVQVVGD-INNVKNAVAIISSRL 265 (678)
Q Consensus 224 ~I~i~~~~~~~p~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~~ 265 (678)
+|.|. .+..|.|.|. .+++++|+.+|..++
T Consensus 599 ~I~I~------------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 599 TISQV------------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEC------------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEc------------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 99995 2578999997 789999999987765
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.43 E-value=9.8e-05 Score=83.14 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHhhccCC------CCCCceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCCCCCCCCCCC
Q 005758 408 FPAQEALLHIQTRIVDLGA------DKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREEVPACVSGTD 480 (678)
Q Consensus 408 ~~a~~~i~~i~~~i~~~~~------~~~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~~p~~~~~~~ 480 (678)
..|.+...++++.+.+... .........|.||.+.++.|||+||+ ||+|+++|||+|.|. ++
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~ 605 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DE 605 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CC
Confidence 3444555555544443211 12235678899999999999999999 999999999999983 45
Q ss_pred eEEEEEec-HHHHHHHHHHHHHHH
Q 005758 481 ELVQIVGE-IQAARDALVEVTTRL 503 (678)
Q Consensus 481 ~~V~I~G~-~~~v~~A~~~I~~~l 503 (678)
..|.|.|+ .+++++|+.+|..++
T Consensus 606 G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 606 ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp SEEEEEESSHHHHHHHHHHTTC--
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 68999997 578899988876543
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.14 E-value=0.00075 Score=59.37 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=59.9
Q ss_pred EEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhc
Q 005758 193 ATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRE 267 (678)
Q Consensus 193 ~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e 267 (678)
.+.+.+.+.+++.|+|++|+.|+.|+..|.+.|+|...+ ++..-.|+|.|++..-.+|+.+|..++.-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~-------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG-------PERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC-------TTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC-------CCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999997532 13566799999999999999999988865
No 73
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.04 E-value=0.00048 Score=62.34 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=71.3
Q ss_pred EEEEEEeeCceeceecccCchhHHhHHhHhCCEEEEccCCCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 005758 79 TTYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRIL 158 (678)
Q Consensus 79 ~~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v~~~~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~i~~~i~ 158 (678)
-.+.++++...+|..||++|+.|+.|+++.|-+|.|-+- +++ ....|...+.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~---s~d-------------------------~~~fI~naLs 87 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY---SSD-------------------------LERIVKNLFP 87 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC---CSS-------------------------HHHHHHHHST
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc---CCC-------------------------HHHHHHHhcC
Confidence 456788999999999999999999999999999988542 111 0111111110
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCCCcCCCCCceEEEEEEcccccceecccCchhHHHHHhccCceEEEe
Q 005758 159 ESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRIL 228 (678)
Q Consensus 159 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~ 228 (678)
-+.. .... .+ +. .....+.+.||....+..|||+|.+++...+-||.+|.|.
T Consensus 88 PA~V-~~V~--i~--------------~~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 88 GVKI-ESIN--VR--------------ER-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp TSCE-EEEE--EE--------------EE-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred CceE-EEEE--Ee--------------ec-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 0000 0000 00 00 1245788899999999999999999999999999988775
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.04 E-value=0.00032 Score=79.91 Aligned_cols=95 Identities=18% Similarity=0.272 Sum_probs=26.3
Q ss_pred CchHHHHHHHHHHHhhccCCCCCCCCCcccccCCCCCCCCCCcCCCCCceEEEEEEcccccceecccCchhHHHHHhccC
Q 005758 143 FSPAQEALFLIHDRILESDGGGGFYGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETK 222 (678)
Q Consensus 143 ~~~~~~a~~~i~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg 222 (678)
+..|.++...|++.+.+.-... +.+-.+|.| ....|.||...++.|||++|++|++|.++||
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~---r~~~~~~ap---------------~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg 600 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAP---RADVGDFAP---------------KIETINIPTDKIREVIGSGGKVIREIVATTG 600 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSC---CSSCCSSCC---------------C------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---hhhhcccCC---------------eEEEEeCCHHHHHhhcCCCchhHHHHHHHHC
Confidence 3455566666776665543321 112223333 4677889999999999999999999999999
Q ss_pred ceEEEecCCCCCCCccCCCCceeeccCC-HHHHHHHHHHHHHHHhc
Q 005758 223 TQIRILPRDHSLPRCVSMSEEIVQVVGD-INNVKNAVAIISSRLRE 267 (678)
Q Consensus 223 ~~I~i~~~~~~~p~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~~~e 267 (678)
++|.|. .+..|.|.+. .+++++|+..|..++.+
T Consensus 601 ~~idi~------------ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 601 AKVDIN------------DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp -------------------------CCSCHHHHHHHHHC-------
T ss_pred CceeEE------------CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 999985 2456788876 89999999999998865
No 75
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.60 E-value=0.001 Score=60.16 Aligned_cols=100 Identities=15% Similarity=0.281 Sum_probs=71.6
Q ss_pred eEEEEEeeccccceEEeCCchHHHHHHHHhCCeEEEeCCCCCCCCcEEEEecCCCCCCcchHHHHHHHHHHH--Hhhcc-
Q 005758 348 LVFRMLCPIDKVGRVIGESEGIVELLQNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQT--RIVDL- 424 (678)
Q Consensus 348 ~~~~i~vp~~~vg~IIG~~G~~I~~I~~~tg~~I~i~~~~~~~~er~v~I~G~~g~~~~~~~a~~~i~~i~~--~i~~~- 424 (678)
-...|.|+...+|..||++|++|+.|+++.|-+|.+-.-..+ . . ..+..++. ++...
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d----------------~-~---~fI~naLsPA~V~~V~ 95 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD----------------L-E---RIVKNLFPGVKIESIN 95 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS----------------H-H---HHHHHHSTTSCEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC----------------H-H---HHHHHhcCCceEEEEE
Confidence 578899999999999999999999999999999988442111 0 0 11111000 00000
Q ss_pred CCCCCCceEEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEe
Q 005758 425 GADKDNIITTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQIL 467 (678)
Q Consensus 425 ~~~~~~~~~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~ 467 (678)
....+......+.||..+.+..|||+|. ++-..+.||.+|.|.
T Consensus 96 i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 96 VRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 0011345678899999999999999999 999999999988874
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.40 E-value=0.00065 Score=77.37 Aligned_cols=63 Identities=11% Similarity=0.278 Sum_probs=11.7
Q ss_pred EEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcC-HHHHHHHHHHHHHHHhc
Q 005758 605 TLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGT-PEQVERAQSVLQGFILS 673 (678)
Q Consensus 605 t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt-~eqv~~Ak~lI~~~i~~ 673 (678)
..++.||.++++.|||+||.+|++|.++|||+|+|.+ +..|.|.++ .+..++|+.+|+.++..
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d------dG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC------CceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999999999999999999943 235677766 99999999999888754
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.43 E-value=0.056 Score=53.13 Aligned_cols=39 Identities=26% Similarity=0.248 Sum_probs=36.0
Q ss_pred eEEEEEEcccccceecccCchhHHHHHhccCceEEEecC
Q 005758 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPR 230 (678)
Q Consensus 192 ~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~ 230 (678)
..+.+.||..+.+.-|||+|.+++.-..-||.+|.|...
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 368899999999999999999999999999999999754
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=93.86 E-value=0.086 Score=54.83 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=65.4
Q ss_pred ceeceecccCchhHHhHHhHh-CCEEEEccCCCCCCccEEEEecCCCCCCCCCCCCCchHHHHHHHHHHHhhccCCCCCC
Q 005758 88 MKAGGVIGKSGSIIKSIRQHT-GAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHDRILESDGGGGF 166 (678)
Q Consensus 88 ~~~g~IIGk~G~~Ik~i~~~t-ga~I~v~~~~~~~~ervv~i~G~~~~~~~~~~~~~~~~~~a~~~i~~~i~e~~~~~~~ 166 (678)
+-+|..||++|++|+.|.++. |=+|.|-+- +++ ....|...+.-+.... .
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~---s~d-------------------------p~~fi~nalsPA~V~~-V 299 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY---DDD-------------------------PARFVANALSPAKVVS-V 299 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC---CSS-------------------------HHHHHHHHTTTSCCSE-E
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEc---CCC-------------------------HHHHHHHhcCCcceeE-E
Confidence 468999999999999999998 888888432 111 1111222221110000 0
Q ss_pred CCCcccccCCCCCCCCCCcCCCCCceEEEEEEcccccceecccCchhHHHHHhccCceEEEecC
Q 005758 167 YGEEEEEYGGGGGVGGGGFRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPR 230 (678)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~ 230 (678)
. .. ......+.+.||....+..|||+|.+++....-||.+|.|...
T Consensus 300 ---~--~~-------------~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 300 ---S--VI-------------DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp ---E--EE-------------ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred ---E--EE-------------cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 0 00 0113478899999999999999999999999999999999764
No 79
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.71 E-value=0.018 Score=65.82 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=0.0
Q ss_pred eEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCC-HHHHHHHHHHHHHHHhc
Q 005758 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGD-INNVKNAVAIISSRLRE 267 (678)
Q Consensus 192 ~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~~~e 267 (678)
....+.||...++.+||++|.+|+.|.++||+.|.|.. +..|.|.+. .+.+++|+..|..++.+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------------dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------------DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------------CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 56778899999999999999999999999999998852 456777775 67778888888776644
No 80
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.33 E-value=0.014 Score=67.10 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=21.7
Q ss_pred eEEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCC-HHHHHHHHHHHHHHH
Q 005758 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGD-INNVKNAVAIISSRL 265 (678)
Q Consensus 192 ~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~~ 265 (678)
....+.||...++.+||++|++|+.|.++||+.|.|.. +..|.|... ..+.++|+..|..+.
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC--------------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC------------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 34568899999999999999999999999999999852 456777765 677777877776654
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.28 E-value=0.025 Score=64.67 Aligned_cols=63 Identities=13% Similarity=0.281 Sum_probs=0.0
Q ss_pred cEEEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcC-HHHHHHHHHHHHHHHh
Q 005758 604 STLEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGT-PEQVERAQSVLQGFIL 672 (678)
Q Consensus 604 ~t~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt-~eqv~~Ak~lI~~~i~ 672 (678)
...++.||.++++.|||+||.+|+.|.++||+.|+|.+ +..|.|++. .+..++|+.+|+.++.
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999999853 245677665 6788889888877654
No 82
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=92.15 E-value=0.12 Score=50.68 Aligned_cols=94 Identities=21% Similarity=0.307 Sum_probs=63.0
Q ss_pred cccceEEeCCchHHHHH-HHHhCCeEEEeCCCCCCCCcEEEEecCCCCCCcchHHHHHHHHHHH--HhhccC-CCCCCce
Q 005758 357 DKVGRVIGESEGIVELL-QNEIGVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQT--RIVDLG-ADKDNII 432 (678)
Q Consensus 357 ~~vg~IIG~~G~~I~~I-~~~tg~~I~i~~~~~~~~er~v~I~G~~g~~~~~~~a~~~i~~i~~--~i~~~~-~~~~~~~ 432 (678)
+-+|..||++|++|+.| ++-.|=+|.|-.-.+ +.. ..+...+. .+.... .+. ..-
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~----------------dp~----~fi~nalsPA~V~~V~i~~~-~~~ 184 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD----------------DPA----RFVANALSPAKVVSVSVIDQ-TAR 184 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS----------------SHH----HHHHHHTTTSCCSEEEEEET-TTT
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecC----------------CHH----HHHHhccCCcceEEEEEEcC-CCc
Confidence 56899999999999999 666778887743110 100 11111110 000000 011 124
Q ss_pred EEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccCC
Q 005758 433 TTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSREE 471 (678)
Q Consensus 433 ~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~~ 471 (678)
...+.||..+.+.-|||+|. |+-..+.||.+|.|.+.++
T Consensus 185 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 185 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred EEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 67899999999999999999 9999999999999976543
No 83
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=92.12 E-value=0.081 Score=55.02 Aligned_cols=93 Identities=23% Similarity=0.332 Sum_probs=64.0
Q ss_pred cccceEEeCCchHHHHHHHHh-CCeEEEeCCCCCCCCcEEEEecCCCCCCcchHHHHHHHHHHH--Hhhcc-CCCCCCce
Q 005758 357 DKVGRVIGESEGIVELLQNEI-GVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQT--RIVDL-GADKDNII 432 (678)
Q Consensus 357 ~~vg~IIG~~G~~I~~I~~~t-g~~I~i~~~~~~~~er~v~I~G~~g~~~~~~~a~~~i~~i~~--~i~~~-~~~~~~~~ 432 (678)
+-+|..||++|++|+.|.++. |=+|.|-.-. .+.. ..+...+. .+... ..+ +...
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s----------------~dp~----~fi~nalsPA~V~~V~~~~-~~~~ 307 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD----------------DDPA----RFVANALSPAKVVSVSVID-QTAR 307 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC----------------SSHH----HHHHHHTTTSCCSEEEEEE-TTTT
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcC----------------CCHH----HHHHHhcCCcceeEEEEEc-CCCc
Confidence 678999999999999999998 8888774311 1100 11111110 00000 001 1245
Q ss_pred EEEEeecCCcceeeecCCch-hHHHHhhcCCeEEEeccC
Q 005758 433 TTRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSRE 470 (678)
Q Consensus 433 ~~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~~ 470 (678)
...+.||..+.+..|||+|. ++-..+.||.+|.|....
T Consensus 308 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 308 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 68899999999999999999 999999999999997644
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=91.05 E-value=0.27 Score=50.86 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=35.5
Q ss_pred eEEEEEEcccccceecccCchhHHHHHhccCceEEEec
Q 005758 192 VATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILP 229 (678)
Q Consensus 192 ~~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~ 229 (678)
..+.+.||..+.+.-|||+|.+++.-..-||.+|.|.+
T Consensus 303 ~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 303 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 47889999999999999999999999999999999975
No 85
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.61 E-value=0.013 Score=67.18 Aligned_cols=60 Identities=18% Similarity=0.388 Sum_probs=21.3
Q ss_pred EEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcC-HHHHHHHHHHHHHHH
Q 005758 606 LEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGT-PEQVERAQSVLQGFI 671 (678)
Q Consensus 606 ~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt-~eqv~~Ak~lI~~~i 671 (678)
.++.||.++++.|||++|.+|++|.+.|||.|+|.+ +..|.|+.. .+..++|+.+|+.++
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999999999952 346777776 778888888887665
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=89.40 E-value=0.22 Score=51.51 Aligned_cols=93 Identities=23% Similarity=0.354 Sum_probs=62.2
Q ss_pred cccceEEeCCchHHHHHHHHh-CCeEEEeCCCCCCCCcEEEEecCCCCCCcchHHHHHHHHHHH--HhhccCCCCCCceE
Q 005758 357 DKVGRVIGESEGIVELLQNEI-GVDLKVADPVDGSDEQIITISSEEGPDDELFPAQEALLHIQT--RIVDLGADKDNIIT 433 (678)
Q Consensus 357 ~~vg~IIG~~G~~I~~I~~~t-g~~I~i~~~~~~~~er~v~I~G~~g~~~~~~~a~~~i~~i~~--~i~~~~~~~~~~~~ 433 (678)
+-+|..||.+|.+|+.+.++. |=+|.+-.-. .+.. ..+...+. ++....-..+....
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s----------------~d~~----~fi~nal~Pa~v~~v~~~d~~~~~ 304 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWS----------------DDPK----QLIANALAPATVIEVEILDKENKA 304 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC----------------SSHH----HHHHHHTCSSCCSEEEEEETTTTE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecC----------------CCHH----HHHHHhcCccEEEEEEEEcCCCCE
Confidence 568999999999999999888 6677663211 0100 11111110 00000000122456
Q ss_pred EEEeecCCcceeeecCCch-hHHHHhhcCCeEEEecc
Q 005758 434 TRLLVPSSEIGCLEGRDGS-LSEMRRSTGANIQILSR 469 (678)
Q Consensus 434 ~~l~VP~~~~g~iIGkgG~-Ik~I~~~tga~I~v~~~ 469 (678)
..+.||..+.+.-|||+|. ++-....||.+|.|.+.
T Consensus 305 ~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 8899999999999999999 99999999999999653
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=59.76 E-value=4.2 Score=36.82 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=27.1
Q ss_pred EEEEEeeCceeceecccCchhHHhHHhHhCCEEE
Q 005758 80 TYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWIN 113 (678)
Q Consensus 80 ~~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~ 113 (678)
++.+-+.....|.||||.|.|++.||--+...++
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn 67 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIH 67 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhh
Confidence 3556667888999999999999999987754443
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=58.72 E-value=3.8 Score=33.72 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=23.7
Q ss_pred EEEEEeeCceeceecccCchhHHhHHhH
Q 005758 80 TYRILCHDMKAGGVIGKSGSIIKSIRQH 107 (678)
Q Consensus 80 ~~~ilip~~~~g~IIGk~G~~Ik~i~~~ 107 (678)
.+++.|...+-|.|||++|..|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4567778888999999999999988765
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=50.99 E-value=7.1 Score=35.30 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=42.3
Q ss_pred EEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhcc
Q 005758 193 ATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRES 268 (678)
Q Consensus 193 ~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e~ 268 (678)
++.+.+.....|.||||.|.++++|+--+..- +.... ...-.+-+.|=++.-+..+..+...+.+-
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~--vn~~~--------~~~V~LDve~YRerReetL~~lA~~~A~k 99 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNW--IHPTY--------GYSIRLEISTFLQNQEKVMDTQLQSVIMT 99 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHH--HHHHH--------SCEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHH--hhhcC--------CceEEEEhHHhHHHHHHHHHHHHHHHHHH
Confidence 56677788899999999999999998554221 11100 00112445555677777777777766664
No 90
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=39.99 E-value=28 Score=33.64 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=46.4
Q ss_pred EEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEcCHHHHHHHHHHHHH
Q 005758 606 LEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISGTPEQVERAQSVLQG 669 (678)
Q Consensus 606 ~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsGt~eqv~~Ak~lI~~ 669 (678)
.-+.++...++.++|++++.++.|.+.+++.|-|- -+. .|-|+++......+...|+.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG-----~NG-~IWi~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG-----QNG-LIWVNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC-----TTS-EEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE-----CCc-EEEEeCCchhHHHHHHHHHH
Confidence 44688899999999999999999999999999993 223 46688998777766666643
No 91
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=39.84 E-value=9.9 Score=31.18 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=23.4
Q ss_pred EEEEEEcccccceecccCchhHHHHHhc
Q 005758 193 ATRMVVSRMHVGCLLGKGGKIIEQMRME 220 (678)
Q Consensus 193 ~~~l~vp~~~~g~iIGk~G~~I~~I~~~ 220 (678)
.+++.|....-|.|||++|+.|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 5677788888899999999999987754
No 92
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=31.86 E-value=37 Score=20.16 Aligned_cols=11 Identities=45% Similarity=0.667 Sum_probs=5.6
Q ss_pred cCCCCcCcccc
Q 005758 3 RSRSKRNYYYD 13 (678)
Q Consensus 3 ~~~~~~~~~~~ 13 (678)
|.|.||.-.+|
T Consensus 5 rrrrkrkrewd 15 (28)
T 3ukx_C 5 RRRRKRKREWD 15 (28)
T ss_dssp -CCCCCCCCCC
T ss_pred HHHHHhhcccc
Confidence 44556655555
No 93
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=26.92 E-value=20 Score=34.58 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=27.3
Q ss_pred EEEEeeCceeceecccCchhHHhHHhHhCCEEEE
Q 005758 81 YRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINV 114 (678)
Q Consensus 81 ~~ilip~~~~g~IIGk~G~~Ik~i~~~tga~I~v 114 (678)
+.+.|.....|.||||.|.++..||.-++..++-
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~ 127 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNK 127 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHHh
Confidence 4455567779999999999999999988865544
No 94
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=26.72 E-value=23 Score=34.33 Aligned_cols=28 Identities=14% Similarity=0.340 Sum_probs=23.5
Q ss_pred EEEEeeCceeceecccCchhHHhHHhHh
Q 005758 81 YRILCHDMKAGGVIGKSGSIIKSIRQHT 108 (678)
Q Consensus 81 ~~ilip~~~~g~IIGk~G~~Ik~i~~~t 108 (678)
+++.|....-|.|||++|..|++|+..-
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 5677788888999999999999887653
No 95
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=26.22 E-value=56 Score=31.38 Aligned_cols=67 Identities=9% Similarity=0.153 Sum_probs=42.3
Q ss_pred EEEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHHHHhc
Q 005758 193 ATRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISSRLRE 267 (678)
Q Consensus 193 ~~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~~~~e 267 (678)
.+.+.+.....+.|||+.|.+++.||.-+..-++-.. . . -.--.+-|.|=++.-+..+..+...+.+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~--~---~---~~rv~LDi~~YR~rR~e~L~~lA~~~A~ 159 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSS--S---D---YIRVKLDTENYRERRKETLETLAKNIAY 159 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTC--S---S---CCEEEEESTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcC--C---C---ceEEEEecchHHHHHHHHHHHHHHHHHH
Confidence 4556677778999999999999999977654332210 0 0 0112356666666666666666655554
No 96
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.71 E-value=23 Score=33.75 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=22.3
Q ss_pred EEEEeeCceeceecccCchhHHhHHhH
Q 005758 81 YRILCHDMKAGGVIGKSGSIIKSIRQH 107 (678)
Q Consensus 81 ~~ilip~~~~g~IIGk~G~~Ik~i~~~ 107 (678)
+++.|....-|.|||++|..|++|+..
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 456677788899999999999987664
No 97
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=25.49 E-value=89 Score=30.10 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=46.2
Q ss_pred EEEEecCCCcCeeecCCCchHHHHHHHcCCeEEEecCCCCCceeEEEEEc-CHHHHHHHHHHHHHH
Q 005758 606 LEVVLPDYAVPKLITKSKTLLTRFSEMSGASVSLVEGQPEGTQKIIQISG-TPEQVERAQSVLQGF 670 (678)
Q Consensus 606 ~~v~VP~~~vg~IIGkgG~~I~~Ir~~sGA~I~i~~~~~~~~~r~I~IsG-t~eqv~~Ak~lI~~~ 670 (678)
.-+.++...++.++|+++..+..|.+.+++.|-|-. + ..|-|++ ++..+..+...|+..
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----N-G~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----N-GRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----T-TEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----C-CEEEEecCCHHHHHHHHHHHHHH
Confidence 556888999999999999999999999999999942 2 2466775 677777777666543
No 98
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=23.61 E-value=31 Score=33.51 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=23.9
Q ss_pred EEEEEeeCceeceecccCchhHHhHHhH
Q 005758 80 TYRILCHDMKAGGVIGKSGSIIKSIRQH 107 (678)
Q Consensus 80 ~~~ilip~~~~g~IIGk~G~~Ik~i~~~ 107 (678)
.+++.|....-|.|||++|..|++|+..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 4567778888999999999999998875
No 99
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.74 E-value=23 Score=34.05 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=24.4
Q ss_pred EEEEEeeCceeceecccCchhHHhHHhHh
Q 005758 80 TYRILCHDMKAGGVIGKSGSIIKSIRQHT 108 (678)
Q Consensus 80 ~~~ilip~~~~g~IIGk~G~~Ik~i~~~t 108 (678)
.+++.|....-|.|||++|..|++|+..-
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 45677888899999999999999887653
No 100
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.54 E-value=1.5e+02 Score=24.49 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=36.3
Q ss_pred CchHHHHHHHcCCeEEEecCC----CC-C-ceeEEEEEcCHHHHHHHHHHHHHH
Q 005758 623 KTLLTRFSEMSGASVSLVEGQ----PE-G-TQKIIQISGTPEQVERAQSVLQGF 670 (678)
Q Consensus 623 G~~I~~Ir~~sGA~I~i~~~~----~~-~-~~r~I~IsGt~eqv~~Ak~lI~~~ 670 (678)
.--|.+|-+.+|+.+.|-... .+ . +.=+|.++|.++++++|...|.+.
T Consensus 35 ~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 35 APLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 457999999999999987321 11 1 223589999999999999988764
No 101
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=21.38 E-value=1.4e+02 Score=28.69 Aligned_cols=58 Identities=24% Similarity=0.305 Sum_probs=43.1
Q ss_pred EEEEEcccccceecccCchhHHHHHhccCceEEEecCCCCCCCccCCCCceeeccCCHHHHHHHHHHHHH
Q 005758 194 TRMVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHSLPRCVSMSEEIVQVVGDINNVKNAVAIISS 263 (678)
Q Consensus 194 ~~l~vp~~~~g~iIGk~G~~I~~I~~~tg~~I~i~~~~~~~p~~~~~~~~~V~I~G~~~~v~~A~~~I~~ 263 (678)
+-+.++...+.+++|+++..++.|.+.+++.|-+-. .-.|-|.++......+...|..
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~------------NG~IWi~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ------------NGLIWVNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT------------TSEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC------------CcEEEEeCCchhHHHHHHHHHH
Confidence 345789999999999999999999999999998842 2346688876544444444443
Done!