Query 005759
Match_columns 678
No_of_seqs 369 out of 2597
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0060 IleS Isoleucyl-tRNA sy 100.0 3E-134 6E-139 1147.1 48.3 611 1-668 141-931 (933)
2 PLN02843 isoleucyl-tRNA synthe 100.0 2E-129 5E-134 1150.7 64.1 673 1-677 122-973 (974)
3 KOG0433 Isoleucyl-tRNA synthet 100.0 2E-127 5E-132 1027.0 42.3 609 1-670 145-936 (937)
4 PRK13804 ileS isoleucyl-tRNA s 100.0 5E-125 1E-129 1113.9 58.5 625 1-675 146-961 (961)
5 PRK05743 ileS isoleucyl-tRNA s 100.0 4E-123 9E-128 1096.0 56.7 604 1-667 138-911 (912)
6 PLN02882 aminoacyl-tRNA ligase 100.0 1E-101 3E-106 922.7 51.6 549 1-603 131-893 (1159)
7 PTZ00427 isoleucine-tRNA ligas 100.0 1.3E-99 3E-104 901.6 50.5 563 1-603 195-1019(1205)
8 PRK06039 ileS isoleucyl-tRNA s 100.0 3.7E-99 8E-104 898.7 51.9 536 1-600 134-857 (975)
9 COG0525 ValS Valyl-tRNA synthe 100.0 4.1E-99 9E-104 848.7 42.7 500 1-603 125-783 (877)
10 TIGR00392 ileS isoleucyl-tRNA 100.0 1.8E-97 4E-102 880.8 49.7 529 1-567 129-860 (861)
11 PRK05729 valS valyl-tRNA synth 100.0 5.9E-94 1.3E-98 849.1 46.4 503 1-603 128-780 (874)
12 PTZ00419 valyl-tRNA synthetase 100.0 1.7E-92 3.7E-97 845.4 47.8 508 1-602 153-893 (995)
13 PLN02381 valyl-tRNA synthetase 100.0 3.2E-92 7E-97 837.8 46.3 523 1-602 221-963 (1066)
14 PRK14900 valS valyl-tRNA synth 100.0 6.9E-92 1.5E-96 836.8 45.2 510 1-603 141-810 (1052)
15 PLN02943 aminoacyl-tRNA ligase 100.0 9E-92 1.9E-96 830.6 45.1 497 1-602 180-856 (958)
16 TIGR00422 valS valyl-tRNA synt 100.0 4.1E-91 8.9E-96 825.7 47.2 505 1-603 125-786 (861)
17 PRK13208 valS valyl-tRNA synth 100.0 6E-89 1.3E-93 801.5 46.1 500 1-604 127-790 (800)
18 PRK12300 leuS leucyl-tRNA synt 100.0 1.6E-88 3.5E-93 800.5 47.1 495 1-580 86-797 (897)
19 PLN02959 aminoacyl-tRNA ligase 100.0 1.4E-84 2.9E-89 775.0 43.9 517 1-581 195-963 (1084)
20 TIGR00395 leuS_arch leucyl-tRN 100.0 1.9E-83 4.2E-88 760.4 47.5 501 1-582 125-845 (938)
21 KOG0432 Valyl-tRNA synthetase 100.0 5E-81 1.1E-85 683.3 42.7 506 2-603 169-898 (995)
22 KOG0434 Isoleucyl-tRNA synthet 100.0 9.8E-81 2.1E-85 660.6 38.8 548 2-603 132-881 (1070)
23 PRK00390 leuS leucyl-tRNA synt 100.0 2.2E-72 4.8E-77 656.8 33.2 451 1-521 108-738 (805)
24 PF00133 tRNA-synt_1: tRNA syn 100.0 8.6E-74 1.9E-78 652.2 20.7 287 1-333 116-402 (601)
25 TIGR00396 leuS_bact leucyl-tRN 100.0 2.9E-72 6.3E-77 656.7 26.5 445 1-521 105-775 (842)
26 PLN02563 aminoacyl-tRNA ligase 100.0 1.9E-69 4.2E-74 633.2 29.7 455 1-522 187-891 (963)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 3.1E-57 6.8E-62 512.7 27.4 457 1-524 110-751 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 4.3E-53 9.4E-58 451.1 19.3 450 1-522 133-798 (876)
29 KOG0437 Leucyl-tRNA synthetase 100.0 7.7E-43 1.7E-47 374.8 36.4 520 2-581 190-950 (1080)
30 PLN02224 methionine-tRNA ligas 100.0 1.4E-36 3.1E-41 342.3 15.9 384 1-497 145-546 (616)
31 PRK12268 methionyl-tRNA synthe 100.0 6.2E-35 1.3E-39 332.5 22.7 170 335-518 349-521 (556)
32 PLN02610 probable methionyl-tR 100.0 9.8E-36 2.1E-40 345.0 16.3 378 1-497 94-532 (801)
33 PRK12267 methionyl-tRNA synthe 100.0 1E-35 2.2E-40 343.5 14.5 378 1-497 80-478 (648)
34 TIGR00398 metG methionyl-tRNA 100.0 3.7E-34 8E-39 324.3 23.7 158 335-497 342-503 (530)
35 COG0143 MetG Methionyl-tRNA sy 100.0 9.6E-34 2.1E-38 312.4 14.9 411 1-498 81-513 (558)
36 PRK00133 metG methionyl-tRNA s 100.0 5.6E-33 1.2E-37 321.1 14.1 409 1-497 78-503 (673)
37 PRK11893 methionyl-tRNA synthe 100.0 1.5E-30 3.2E-35 294.4 13.3 377 1-497 77-476 (511)
38 KOG0436 Methionyl-tRNA synthet 100.0 3.4E-29 7.3E-34 255.8 11.6 380 2-498 116-528 (578)
39 cd07960 Anticodon_Ia_Ile_BEm A 100.0 1.5E-27 3.2E-32 232.5 19.9 179 358-544 1-180 (180)
40 cd07961 Anticodon_Ia_Ile_ABEc 99.9 2E-26 4.2E-31 225.2 19.2 174 358-539 1-178 (183)
41 PF08264 Anticodon_1: Anticodo 99.9 1.5E-22 3.3E-27 191.8 17.6 153 402-566 1-153 (153)
42 PF13603 tRNA-synt_1_2: Leucyl 99.9 2.9E-24 6.3E-29 205.9 2.4 163 71-276 7-185 (185)
43 cd07962 Anticodon_Ia_Val Antic 99.8 1.1E-17 2.4E-22 155.0 16.1 135 358-495 1-135 (135)
44 cd00817 ValRS_core catalytic c 99.7 8.5E-19 1.8E-23 190.2 5.6 87 1-90 93-185 (382)
45 cd07959 Anticodon_Ia_Leu_AEc A 99.7 4.7E-16 1E-20 140.2 14.3 116 358-495 1-117 (117)
46 cd07957 Anticodon_Ia_Met Antic 99.7 3.9E-16 8.4E-21 143.2 12.3 96 398-495 34-129 (129)
47 cd07958 Anticodon_Ia_Leu_BEm A 99.6 1.3E-14 2.8E-19 130.6 13.3 117 358-495 1-117 (117)
48 KOG1247 Methionyl-tRNA synthet 99.6 2.7E-14 5.8E-19 146.9 14.4 156 337-497 361-520 (567)
49 PF09334 tRNA-synt_1g: tRNA sy 99.6 3.4E-17 7.4E-22 177.5 -7.9 62 1-64 75-136 (391)
50 cd07375 Anticodon_Ia_like Anti 99.4 1.3E-11 2.8E-16 110.6 13.6 116 361-484 2-117 (117)
51 cd00814 MetRS_core catalytic c 99.4 1.4E-13 3E-18 146.3 0.7 79 1-90 76-154 (319)
52 PRK00260 cysS cysteinyl-tRNA s 99.3 1.7E-11 3.8E-16 136.2 14.5 110 315-447 266-376 (463)
53 PTZ00399 cysteinyl-tRNA-synthe 99.2 2.4E-10 5.2E-15 131.0 18.1 126 311-446 311-437 (651)
54 cd00818 IleRS_core catalytic c 99.2 4.7E-12 1E-16 135.3 3.4 50 1-50 94-143 (338)
55 cd00812 LeuRS_core catalytic c 98.4 1.8E-07 4E-12 99.2 4.7 51 1-51 76-126 (314)
56 PRK01611 argS arginyl-tRNA syn 98.4 1.9E-06 4.1E-11 97.5 12.0 106 334-445 353-466 (507)
57 TIGR00435 cysS cysteinyl-tRNA 98.3 1.9E-06 4.2E-11 95.9 8.9 97 331-438 276-373 (465)
58 PF06827 zf-FPG_IleRS: Zinc fi 98.2 1E-07 2.2E-12 63.6 -2.8 30 636-665 1-30 (30)
59 PLN02946 cysteine-tRNA ligase 98.1 9.6E-06 2.1E-10 91.0 10.5 107 334-447 337-444 (557)
60 cd00668 Ile_Leu_Val_MetRS_core 98.1 2.3E-06 5E-11 90.8 4.8 48 1-48 89-136 (312)
61 PRK14536 cysS cysteinyl-tRNA s 98.1 2.2E-05 4.7E-10 87.2 12.4 104 334-437 293-400 (490)
62 PRK14535 cysS cysteinyl-tRNA s 98.1 1.6E-05 3.5E-10 89.9 11.2 102 314-438 507-609 (699)
63 TIGR00456 argS arginyl-tRNA sy 98.0 1.1E-05 2.5E-10 92.3 7.5 113 334-448 409-526 (566)
64 PRK14534 cysS cysteinyl-tRNA s 97.7 0.00067 1.5E-08 75.2 14.2 96 337-437 297-393 (481)
65 cd00817 ValRS_core catalytic c 97.0 0.00068 1.5E-08 74.0 5.1 67 266-333 118-197 (382)
66 PRK11893 methionyl-tRNA synthe 97.0 0.00077 1.7E-08 76.7 5.5 67 267-333 101-185 (511)
67 TIGR03447 mycothiol_MshC cyste 96.7 0.0016 3.4E-08 70.9 4.7 95 314-437 287-383 (411)
68 PRK12418 cysteinyl-tRNA synthe 96.4 0.0072 1.6E-07 65.4 7.4 101 315-447 261-364 (384)
69 cd00668 Ile_Leu_Val_MetRS_core 96.3 0.004 8.6E-08 66.1 4.2 53 266-333 114-166 (312)
70 COG0215 CysS Cysteinyl-tRNA sy 96.2 0.026 5.6E-07 61.8 10.3 103 314-438 267-370 (464)
71 KOG2007 Cysteinyl-tRNA synthet 96.2 0.031 6.8E-07 60.7 10.7 110 334-450 319-429 (586)
72 PRK12267 methionyl-tRNA synthe 96.2 0.0058 1.2E-07 71.6 5.3 60 267-326 104-178 (648)
73 cd00818 IleRS_core catalytic c 95.9 0.0064 1.4E-07 65.3 4.0 59 266-333 119-177 (338)
74 PRK12451 arginyl-tRNA syntheta 95.4 0.099 2.2E-06 60.0 11.3 104 337-448 413-524 (562)
75 cd07956 Anticodon_Ia_Arg Antic 95.1 0.49 1.1E-05 44.7 13.1 107 337-448 2-117 (156)
76 COG0495 LeuS Leucyl-tRNA synth 94.9 0.0049 1.1E-07 72.1 -1.3 105 100-235 208-312 (814)
77 KOG1247 Methionyl-tRNA synthet 94.0 0.033 7.2E-07 59.0 2.5 64 7-75 97-160 (567)
78 PLN02563 aminoacyl-tRNA ligase 91.7 0.19 4.2E-06 61.0 4.9 67 266-333 212-292 (963)
79 COG0143 MetG Methionyl-tRNA sy 90.6 0.24 5.1E-06 56.3 3.9 35 292-326 173-207 (558)
80 cd00814 MetRS_core catalytic c 90.6 0.31 6.7E-06 51.9 4.7 57 268-327 101-158 (319)
81 PRK00133 metG methionyl-tRNA s 89.9 0.21 4.5E-06 58.9 2.9 35 292-326 170-204 (673)
82 TIGR00396 leuS_bact leucyl-tRN 89.7 0.3 6.6E-06 58.8 4.1 68 266-333 130-212 (842)
83 PRK12418 cysteinyl-tRNA synthe 89.6 0.38 8.2E-06 52.3 4.3 49 2-54 85-138 (384)
84 COG0018 ArgS Arginyl-tRNA synt 89.4 7.3 0.00016 44.8 14.6 107 336-446 421-536 (577)
85 PLN02610 probable methionyl-tR 89.2 0.28 6.1E-06 58.5 3.3 39 288-326 184-222 (801)
86 cd00671 ArgRS_core catalytic c 89.0 0.44 9.5E-06 47.6 4.0 48 2-53 76-123 (212)
87 TIGR03447 mycothiol_MshC cyste 88.5 0.53 1.1E-05 51.5 4.5 49 2-54 112-165 (411)
88 PLN02286 arginine-tRNA ligase 87.6 9.1 0.0002 44.2 14.1 138 336-480 423-568 (576)
89 PRK00390 leuS leucyl-tRNA synt 84.0 1 2.2E-05 54.2 4.1 62 266-327 133-208 (805)
90 cd00812 LeuRS_core catalytic c 82.6 1.2 2.6E-05 47.3 3.6 55 266-332 101-157 (314)
91 PLN02224 methionine-tRNA ligas 80.4 2.2 4.8E-05 49.5 5.0 59 266-325 168-242 (616)
92 PF09334 tRNA-synt_1g: tRNA sy 75.9 3.3 7.2E-05 45.4 4.5 61 266-327 98-202 (391)
93 cd00672 CysRS_core catalytic c 75.6 0.44 9.4E-06 47.6 -2.2 40 315-359 174-213 (213)
94 KOG0435 Leucyl-tRNA synthetase 71.5 2.2 4.7E-05 48.5 1.8 61 267-327 159-234 (876)
95 PF05746 DALR_1: DALR anticodo 61.5 69 0.0015 28.1 9.3 48 399-448 32-79 (119)
96 PF01406 tRNA-synt_1e: tRNA sy 56.9 8.8 0.00019 40.2 2.8 50 2-54 84-134 (300)
97 COG2260 Predicted Zn-ribbon RN 55.8 4.5 9.7E-05 31.1 0.4 27 634-668 3-29 (59)
98 PRK12558 glutamyl-tRNA synthet 52.9 49 0.0011 36.9 8.0 38 2-43 59-96 (445)
99 cd00674 LysRS_core_class_I cat 48.9 18 0.00038 39.1 3.7 44 331-375 286-330 (353)
100 PRK00750 lysK lysyl-tRNA synth 48.2 5.1 0.00011 45.6 -0.6 44 331-376 291-335 (510)
101 TIGR00467 lysS_arch lysyl-tRNA 42.7 26 0.00057 39.8 4.0 43 334-377 288-330 (515)
102 PF08271 TF_Zn_Ribbon: TFIIB z 42.3 4.2 9.1E-05 29.3 -1.6 34 638-672 2-35 (43)
103 KOG1779 40s ribosomal protein 42.1 4.2 9E-05 33.0 -1.7 28 638-666 36-63 (84)
104 smart00836 DALR_1 DALR anticod 36.1 2.4E+02 0.0053 24.7 8.6 48 399-448 35-82 (122)
105 COG4416 Com Mu-like prophage p 35.6 15 0.00032 27.6 0.4 11 637-647 25-35 (60)
106 PF13248 zf-ribbon_3: zinc-rib 33.9 27 0.00058 22.2 1.4 21 637-663 3-23 (26)
107 KOG0614 cGMP-dependent protein 33.5 33 0.00072 38.4 2.8 29 21-49 522-550 (732)
108 PF04135 Nop10p: Nucleolar RNA 32.2 17 0.00037 27.6 0.3 22 637-666 6-27 (53)
109 COG5273 Uncharacterized protei 30.8 22 0.00048 37.6 0.9 31 635-668 108-138 (309)
110 PF13240 zinc_ribbon_2: zinc-r 28.5 37 0.00081 21.0 1.3 20 638-663 1-20 (23)
111 PF13453 zf-TFIIB: Transcripti 26.2 16 0.00034 26.0 -0.8 27 638-664 1-27 (41)
112 smart00550 Zalpha Z-DNA-bindin 25.5 85 0.0018 25.0 3.3 30 26-55 37-67 (68)
113 PF10571 UPF0547: Uncharacteri 25.1 38 0.00082 21.7 0.9 20 638-663 2-21 (26)
114 KOG0436 Methionyl-tRNA synthet 25.1 1.7E+02 0.0036 32.1 6.2 35 292-326 185-219 (578)
115 COG4049 Uncharacterized protei 24.5 28 0.00061 26.4 0.3 9 637-645 18-26 (65)
116 cd09287 GluRS_non_core catalyt 24.4 76 0.0016 32.3 3.4 38 2-43 60-97 (240)
117 PLN02627 glutamyl-tRNA synthet 22.6 2.9E+02 0.0063 31.6 7.9 38 2-43 102-148 (535)
118 COG5270 PUA domain (predicted 21.6 35 0.00076 32.8 0.4 28 35-62 1-28 (202)
119 COG1998 RPS31 Ribosomal protei 21.5 58 0.0012 24.3 1.4 27 50-79 21-49 (51)
120 PF02295 z-alpha: Adenosine de 21.2 76 0.0017 25.2 2.2 31 25-55 34-65 (66)
121 COG0018 ArgS Arginyl-tRNA synt 20.5 70 0.0015 36.9 2.6 49 1-51 246-296 (577)
No 1
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-134 Score=1147.06 Aligned_cols=611 Identities=44% Similarity=0.764 Sum_probs=554.2
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
|++|+|||+++||+++|.|||++|++.++|+|.+|++|||||||.|||+|||+|+|||||+||||.+ +.++|+||+|++
T Consensus 141 ~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d-~~dpSIyV~F~v 219 (933)
T COG0060 141 KEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGD-VKDPSIYVKFPV 219 (933)
T ss_pred HHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccc-cCCceEEEEEEe
Confidence 5799999999999999999999999999999999999999999999999999999999999999977 999999999999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+.. ...+.+++||||||||||||+||||||+.+|++|+.+ ++.||
T Consensus 220 ~~~~---------~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~-------------------------~~~~I 265 (933)
T COG0060 220 KDEG---------LDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVN-------------------------GEKLI 265 (933)
T ss_pred ccCC---------CCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEEC-------------------------CEEEE
Confidence 8641 1246999999999999999999999999999999986 58999
Q ss_pred EeccchHHHHHHhCCc-eEEEEeeecCcccCCEeeCCCCC----CcccEEEccCccccCCCCCceeccCCCCHHHHHHHH
Q 005759 161 VASDLVPTLEAKWGTK-LVIKKTLAGSDLENCRYVHPVDN----RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSL 235 (678)
Q Consensus 161 ia~~~~~~l~~~~~~~-~~i~~~~~G~~l~g~~~~~P~~~----~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~ 235 (678)
+|+++++++.+..+.+ ++++++++|++|+|+.|.|||.. +..|| +.|||||.+.|||+||+|||||++||.+|+
T Consensus 266 lA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v-~~gd~VT~d~GTG~VHtAPghGeeDy~vg~ 344 (933)
T COG0060 266 LAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPV-ILGDHVTLDDGTGLVHTAPGHGEEDYEVGK 344 (933)
T ss_pred EhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeE-EecCeEecCCCccceecCCCCCHHHHHHHH
Confidence 9999999999998876 89999999999999999999995 77888 779999999999999999999999999999
Q ss_pred HcC-CCcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccch
Q 005759 236 KYG-LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVE 314 (678)
Q Consensus 236 ~~~-l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~ 314 (678)
++| +|+++|||++|+|+++++.|.|+.+. +||+.|++.|+++|.|++.+.|+||||||||||+|+|||+|+|||++|+
T Consensus 345 ~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~-dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~ 423 (933)
T COG0060 345 KYGLLEVLNPVDDNGRYTEEAPKYEGLFVK-DANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVD 423 (933)
T ss_pred HcCCcCCccccCCCccccccchhhCCceec-cCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHH
Confidence 999 79999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccCCC-------------------------------------------------------------
Q 005759 315 GFRQAAMDAIGQVKWVPPQ------------------------------------------------------------- 333 (678)
Q Consensus 315 ~~~~~~~~~i~~v~~~P~~------------------------------------------------------------- 333 (678)
++|+++++.+++++|+|++
T Consensus 424 ~~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w 503 (933)
T COG0060 424 KLRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDW 503 (933)
T ss_pred HHHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhh
Confidence 9999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 504 ~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~ 583 (933)
T COG0060 504 HRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGR 583 (933)
T ss_pred hccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCcccccCccccCcEEEEeccccchhHHHHHHHHHHHcCC
Confidence
Q ss_pred --------------------------------CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHH
Q 005759 334 --------------------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLL 381 (678)
Q Consensus 334 --------------------------------~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l 381 (678)
++++||||+||||++++++++|+.||+++++++.+.+++|||++||++
T Consensus 584 aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l 663 (933)
T COG0060 584 APYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLL 663 (933)
T ss_pred chHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 446999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCC-ccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChH
Q 005759 382 GNLHDWRVGN-SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSF 460 (678)
Q Consensus 382 ~nl~~~~~~~-~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~ 460 (678)
+|+++|+|.. .++..++..+||||++++++++++++++|++|+|+++++.+++|+..+||||||+++|+|+|+++.+++
T Consensus 664 ~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~ 743 (933)
T COG0060 664 GNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSP 743 (933)
T ss_pred HhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCH
Confidence 9999999973 355667889999999999999999999999999999999999999889999999999999999988999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHH
Q 005759 461 TRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELR 540 (678)
Q Consensus 461 ~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr 540 (678)
+|+++|++|+++|..++++||||+||+|||||++|+.. ...+|||+.+||+.+..+.+........+..++++|
T Consensus 744 ~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~------~~~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k~R 817 (933)
T COG0060 744 DRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE------RKEESVHLEDWPEVDEELIDVEAALAARWEALLKLR 817 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC------CCCceeEeccCCcccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999754 114799999999988776643456778899999999
Q ss_pred HHHHHHHHHHhccccCCCCceeEEEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceEEccCCCCCCccCCCCCCccc
Q 005759 541 TEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYL 620 (678)
Q Consensus 541 ~~v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~ 620 (678)
..++++++.+|.++.|+++++++++++.++ ...+..+ ..+|..+|++|.+.+.......... .......
T Consensus 818 ~~v~~~l~~~r~~~~I~~~lnak~~~~~~~---~~~~~~~------~~~l~~~~~~s~~~v~~~~~~~~~~--~~~~~~~ 886 (933)
T COG0060 818 DPVNKALEAARLEKVIGSSLNAKVVIYTED---SELLYKL------KPNLGKVLITSAVEVAKALEALAGA--EAEELVD 886 (933)
T ss_pred HHHHHHHHHHHhhhHhhhcceeEEEEeecc---hhhhhhh------chhHHHHHhhhHHHHHhhhccccch--hhhhhhc
Confidence 999999999999999999999999999865 2233333 2569999999988776532111000 0000000
Q ss_pred ccCCceEEEEEEeCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhcc
Q 005759 621 VEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAV 668 (678)
Q Consensus 621 ~~~~~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~ 668 (678)
+ ..+.+.+.++++.||+|||+|..+++++..++++|.||.++|+.
T Consensus 887 ~---~~~~~~~~~~eg~~c~r~~~~~~~~~~~~~~e~l~~~~v~~iq~ 931 (933)
T COG0060 887 G---DGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVRRIQE 931 (933)
T ss_pred c---cceeEEEEeccCCcCCeEEEEcCcCCcccccchHHHHHHHHHhh
Confidence 0 01688899999999999999999999999999999999999875
No 2
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=2.2e-129 Score=1150.66 Aligned_cols=673 Identities=74% Similarity=1.246 Sum_probs=565.1
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||+|||+++||+++|+||||+|+++++|+|.+|+++||||||.|||+|||+|+|||||+||||++++.++++||+|++
T Consensus 122 ~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~ 201 (974)
T PLN02843 122 RESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPV 201 (974)
T ss_pred HHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+....+...+....++.+++||||||||||||+||||||+++|++|+.++...+....+...++.+........++.||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~i 281 (974)
T PLN02843 202 VSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLI 281 (974)
T ss_pred cCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccccccccccccccccCceEE
Confidence 75322111111111123699999999999999999999999999999875210000000000111111111111246899
Q ss_pred EeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCC
Q 005759 161 VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 240 (678)
Q Consensus 161 ia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~ 240 (678)
|++++++++...++.+++++++++|++|+|++|.||++++++||+++++||++++|||+||+|||||++||+++++|||+
T Consensus 282 va~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~ 361 (974)
T PLN02843 282 VATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLP 361 (974)
T ss_pred eHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCC
Confidence 99999999988877789999999999999999999999999999667899999999999999999999999999999999
Q ss_pred cccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHHHH
Q 005759 241 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAA 320 (678)
Q Consensus 241 ~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~ 320 (678)
++++||++|+|++++|+|.|+.++.+|++.|++.|++.|.+++.+.++|+|||||||++|||+|+|+|||++++.+|+++
T Consensus 362 ~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~a 441 (974)
T PLN02843 362 LLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAA 441 (974)
T ss_pred cccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHH
Confidence 99999999999999899999999658999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCC-------------------------------------------------------------------
Q 005759 321 MDAIGQVKWVPPQ------------------------------------------------------------------- 333 (678)
Q Consensus 321 ~~~i~~v~~~P~~------------------------------------------------------------------- 333 (678)
++++++++|+|++
T Consensus 442 l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~ 521 (974)
T PLN02843 442 LDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVED 521 (974)
T ss_pred HHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccCCHHH
Confidence 9999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 522 l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~~~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H 601 (974)
T PLN02843 522 LLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGSREGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH 601 (974)
T ss_pred hCcccccCchhhhEecccccccchhcCCChHHHhccccccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe
Confidence
Q ss_pred -----------------------CCC---------CCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHH
Q 005759 334 -----------------------EAP---------GYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLL 381 (678)
Q Consensus 334 -----------------------~~~---------~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l 381 (678)
+++ +||||+||||++++++.+|++|+.+.++++.+.++||||++||++
T Consensus 602 G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~l 681 (974)
T PLN02843 602 GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLL 681 (974)
T ss_pred ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHH
Confidence 223 699999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHh
Q 005759 382 GNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFT 461 (678)
Q Consensus 382 ~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~ 461 (678)
+|+.+|.+...++..++..+|+|+++++++++++++++|++|+|++|++.+++|++.++||+||+.+|||+|++..++..
T Consensus 682 gnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~ 761 (974)
T PLN02843 682 GNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFT 761 (974)
T ss_pred hCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHH
Confidence 99998875333344556788999999999999999999999999999999999998899999999999999998777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHH
Q 005759 462 RRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRT 541 (678)
Q Consensus 462 r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~ 541 (678)
|++++++|+.+++.+++||+|||||+|||||++|+.. .++...+||+++.||..++.+.+.+..+...|+.++++|.
T Consensus 762 r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~---~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~r~ 838 (974)
T PLN02843 762 RRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQ---EDGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEVRD 838 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcccc---ccCCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999742 0011136999999999887665432345567899999999
Q ss_pred HHHHHHHHHhccccCCCCceeEEEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceEEccCCCCCCccCCCCCCcccc
Q 005759 542 EVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLV 621 (678)
Q Consensus 542 ~v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~~ 621 (678)
+|++++|.+|+++.|++++++.|+|+++++...+.|+.++...+..++|+++|+||+|++.............+...+.
T Consensus 839 ~v~~~l~~~r~~~~i~~~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~- 917 (974)
T PLN02843 839 EVNKVLESARNGKLIGASLEAKVYLHASDASLAARLAELCGASNGADELRRIFITSQVEVVSSEDDETAACGSYTGEYV- 917 (974)
T ss_pred HHHHHHHHHHhcCCCCcccceeEEEEeCCHHHHHHHHhhccccchHHHHHHHhccCceEeecCCCccccccchhccccc-
Confidence 9999999999999999999999999876654556666542111223679999999999996411100000000000000
Q ss_pred cCCceEEEEEEeCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhccCCccccccC
Q 005759 622 EGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMAAV 677 (678)
Q Consensus 622 ~~~~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~~~~~~~~~~ 677 (678)
++..++.|.|.++.++||||||+|++++|.++++++||.||.+||..+||+++||.
T Consensus 918 ~~~~~~~~~v~~~~~~kC~RCW~~~~~~~~~~~~~~lC~rc~~~~~~~~~~~~~~~ 973 (974)
T PLN02843 918 EGAGRVWVGVSRADGSKCERCWNYSPAVGSFSDHPTLCERCYPVVIAQPPPLAAAA 973 (974)
T ss_pred cccCceEEEEEeCCCCCCCCCCCEeCCcCCCCCCCCcChhhHHHHcCCCCcccccC
Confidence 11135789999999999999999999999988899999999999999999987764
No 3
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-127 Score=1026.97 Aligned_cols=609 Identities=42% Similarity=0.695 Sum_probs=539.8
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
|+.|+||||++||+++|.||||+|++.|+++|.+||+||||||+.|||||||+++|||||+|+||+++|.|+|+|++||+
T Consensus 145 ~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L 224 (937)
T KOG0433|consen 145 MEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKL 224 (937)
T ss_pred HHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+++.. ...+....++++++||||||||||+|.|||+||+..|++++.+. ...++.++
T Consensus 225 ~~~S~~-~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~---------------------~~~~~~yl 282 (937)
T KOG0433|consen 225 INFSSS-AHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDN---------------------NPTSTFYL 282 (937)
T ss_pred cCCccc-cccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEecc---------------------CCcceEEE
Confidence 877653 11223344679999999999999999999999999999999862 11367899
Q ss_pred EeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCC-CcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCC
Q 005759 161 VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDN-RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL 239 (678)
Q Consensus 161 ia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~-~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l 239 (678)
||..++++|+..++...+++++++|..|.|.+|.||+.+ ...|+ ++++|||++.|||+||+|||||++||.++.++|+
T Consensus 283 vas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~-l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l 361 (937)
T KOG0433|consen 283 VASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPI-LEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGL 361 (937)
T ss_pred EccchhhhhhhhcCcceeeeeecchhhccCceecCcCccccCCcc-ccccceecCcccceeecCCCCChHHHHHHhhcCC
Confidence 999999999998888899999999999999999999865 46898 7899999999999999999999999999999999
Q ss_pred CcccccCCCCccccccC-ccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHH
Q 005759 240 PILSPVDDEGKFTEEAG-KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 318 (678)
Q Consensus 240 ~~~~~vd~~G~~~~~~~-~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~ 318 (678)
|+.++||++|+|+.+++ .+.|+.|++++++.|+.+|. ..+++.++|.|+||||||||+|||+|+|+|||++++++|.
T Consensus 362 ~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~ 439 (937)
T KOG0433|consen 362 RVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKK 439 (937)
T ss_pred CcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhh
Confidence 99999999999999987 79999999999999999998 5789999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccCCC-----------------------------------------------------------------
Q 005759 319 AAMDAIGQVKWVPPQ----------------------------------------------------------------- 333 (678)
Q Consensus 319 ~~~~~i~~v~~~P~~----------------------------------------------------------------- 333 (678)
.|.+++++|+|+|..
T Consensus 440 ~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~ 519 (937)
T KOG0433|consen 440 RASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDV 519 (937)
T ss_pred HHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCCh
Confidence 999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 520 eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~ 599 (937)
T KOG0433|consen 520 EELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDNEREHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKK 599 (937)
T ss_pred hHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeecCCCCCcceeeEEecchhcchHHHHHHHHHHHHhccCCchh
Confidence
Q ss_pred ---------------------------------CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHH
Q 005759 334 ---------------------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYL 380 (678)
Q Consensus 334 ---------------------------------~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~ 380 (678)
..|.||||+||||+|+++.+.|+.+++.+++++++.+.|+||++||+
T Consensus 600 vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~Rfl 679 (937)
T KOG0433|consen 600 VIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFL 679 (937)
T ss_pred eeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecccccCceecCHHHHHHHHHHHHHHHhHHHHH
Confidence 23579999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCC-CccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCCh
Q 005759 381 LGNLHDWRVG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTS 459 (678)
Q Consensus 381 l~nl~~~~~~-~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~ 459 (678)
+||+.+|++. ..+|..++..+|+++|.+++.+++++++.|++|+|+++++.+..|++++||++||+++||||||+..++
T Consensus 680 lGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s 759 (937)
T KOG0433|consen 680 LGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGS 759 (937)
T ss_pred hhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCc
Confidence 9999999887 678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHH
Q 005759 460 FTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEL 539 (678)
Q Consensus 460 ~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~l 539 (678)
..|+++|++|.+++..+++.++||+||++||+||+++.. .+-+|...||..++.|......+...|..+.++
T Consensus 760 ~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~--------~~~~f~~k~~~l~s~~~~~~~~~~~~~~~vl~~ 831 (937)
T KOG0433|consen 760 ESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS--------HEKIFRLKWEDLHSGLLTPHDQLSKHMKFVLEV 831 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC--------CCcccccCccccchhhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999843 133899999999999988766666678899999
Q ss_pred HHHHHHHHHHHhccccCCCCceeEEEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceEEccCCCCCCccCCCCCCcc
Q 005759 540 RTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEY 619 (678)
Q Consensus 540 r~~v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~~~~~~~~~~~~~~~~~ 619 (678)
|.+..+.++.++..+++++.+++.+.+.++-- ++.+|+++++++++.+....+... ..
T Consensus 832 ~~~~~~~l~la~~~~~~~s~L~~~~~~ht~~~--------------~~~~L~~~l~~~~~~~~~~~~~~~--------~~ 889 (937)
T KOG0433|consen 832 RNELESTLGLAIDTSKKGSVLQVTPEYHTIRI--------------YESELPELLNVSQVILHENRDENS--------VE 889 (937)
T ss_pred HHhHHHHHHhhhhhhhccceEEEEEeeccccc--------------chhHHHHHHHHhhhhhhhhhcccc--------hH
Confidence 99998999998888899999998877765310 024566777777776654221110 00
Q ss_pred cccCCc--eEEEEEEeCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhccCC
Q 005759 620 LVEGKD--KVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQP 670 (678)
Q Consensus 620 ~~~~~~--~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~~~ 670 (678)
.++... .......+|+++||+|||+++.. ++.||.||.+++..+.
T Consensus 890 ~vE~~~~~~~~~~~~ra~~~~c~rcw~~~~~------~~~lc~rc~~~~~~~~ 936 (937)
T KOG0433|consen 890 LVESRLRYCERCRKHRATFSRCVRCWDLRKQ------DPPLCLRCQDLRFQDL 936 (937)
T ss_pred HHHhhhHHHHHHHHHHhcccccHHHHhhhcc------CCcccchHHHHHhhcc
Confidence 011000 11233458999999999999985 3459999999987654
No 4
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-125 Score=1113.92 Aligned_cols=625 Identities=38% Similarity=0.639 Sum_probs=550.7
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||+|||+++||+|+|.||||.|+++++|+|.+|+++||||||.+||+|||+|+|||||+||||++ +.++++||+|++
T Consensus 146 ~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~-~~s~~~~v~F~~ 224 (961)
T PRK13804 146 REEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHD-IESDTIWVKFPV 224 (961)
T ss_pred HHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhccccc-ccCceEEEEEEe
Confidence 4799999999999999999999999999999999999999999999999999999999999999975 999999999999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+.+. + + ..+.+++||||||||||||+||||||+++|++++.++... ..+.+ .++.||
T Consensus 225 ~~~~~-~---~---~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~-------------~~~~~--~~e~~i 282 (961)
T PRK13804 225 KDGKG-I---L---DSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAEN-------------DFWAK--PGERLV 282 (961)
T ss_pred cCccc-c---c---CCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccc-------------ccccc--CCcEEE
Confidence 64321 1 1 1246899999999999999999999999999998642000 00000 136899
Q ss_pred EeccchHHHHHHhCC-ceEEEEeeecCcccCCEeeCCCCCC-----cccEEEccCccccCCCCCceeccCCCCHHHHHHH
Q 005759 161 VASDLVPTLEAKWGT-KLVIKKTLAGSDLENCRYVHPVDNR-----QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTS 234 (678)
Q Consensus 161 ia~~~~~~l~~~~~~-~~~i~~~~~G~~l~g~~~~~P~~~~-----~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~ 234 (678)
||+++++++..+.+. +++++++++|++|.|++|.||++++ ++|| |+++||++++|||+||+|||||++||+++
T Consensus 283 va~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pv-i~~~~V~~~~GTG~Vh~aPahg~~Dy~~~ 361 (961)
T PRK13804 283 VADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPV-LDGDHVTDDAGTGFVHTAPGHGREDFNVW 361 (961)
T ss_pred eHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEE-EecCccCCCCCCceEEeCCCCCHHHHHHH
Confidence 999999999988766 4799999999999999999999998 8999 78999999999999999999999999999
Q ss_pred HHcCC-CcccccCCCCccccccCc--------cCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcc
Q 005759 235 LKYGL-PILSPVDDEGKFTEEAGK--------FSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA 305 (678)
Q Consensus 235 ~~~~l-~~~~~vd~~G~~~~~~~~--------~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~ 305 (678)
++||| |++++||++|+|+++++. |.|+.+. +|++.|++.|++.|.+++.+.|.|+||||||||+|||+|+
T Consensus 362 ~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~-ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~ 440 (961)
T PRK13804 362 MKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYG-DANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRN 440 (961)
T ss_pred HHcCCCcccccCCCCeEEccCCCccccccccccCCcchh-hhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEec
Confidence 99999 999999999999988776 7888884 8999999999999999999999999999999999999999
Q ss_pred cCcccccchH-------HHHHHHHHhhcCcccCCC---------------------------------------------
Q 005759 306 TEQWFASVEG-------FRQAAMDAIGQVKWVPPQ--------------------------------------------- 333 (678)
Q Consensus 306 t~QWFi~~~~-------~~~~~~~~i~~v~~~P~~--------------------------------------------- 333 (678)
|+|||++|++ +|+++++++++++|+|++
T Consensus 441 t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~ 520 (961)
T PRK13804 441 TPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNA 520 (961)
T ss_pred cccccEEcCCcccchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcCCCCEeccHHHHH
Confidence 9999999998 999999999999999986
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 521 ~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~~~~~~~PaD~~~eG~Di~rgWF~s 600 (961)
T PRK13804 521 RIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLEDRPDLKWPADLYLEGSDQHRGWFNS 600 (961)
T ss_pred HHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccccCCcccCCCceEEEEEcccccHHHHH
Confidence
Q ss_pred -------------------------------------------CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHH
Q 005759 334 -------------------------------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIY 370 (678)
Q Consensus 334 -------------------------------------------~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~ 370 (678)
++++||||+||||++++++++|++||++.++++++++
T Consensus 601 ~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~ 680 (961)
T PRK13804 601 SLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETY 680 (961)
T ss_pred HHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHH
Confidence 3359999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCC-ccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhh
Q 005759 371 RKLRGTLRYLLGNLHDWRVGN-SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAK 449 (678)
Q Consensus 371 ~ki~n~~rf~l~nl~~~~~~~-~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K 449 (678)
++|||++||+++|+.+|.+.. .++..++..+|+|+++++++++++++++|++|+|++|++.+++|+++++||+||+.+|
T Consensus 681 ~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K 760 (961)
T PRK13804 681 RKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRK 760 (961)
T ss_pred HHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999887652 2234567789999999999999999999999999999999999998889999999999
Q ss_pred ccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhH
Q 005759 450 DRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGE 529 (678)
Q Consensus 450 ~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~ 529 (678)
||||++..++..|++++++|+.+|+.+++||+|||||+|||||++|+.. ..+||+++.||+.++.+.+ .++
T Consensus 761 ~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~-------~~~sv~l~~wP~~~~~~~d--~~~ 831 (961)
T PRK13804 761 DALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPE-------EEVSVHLEQFPETPAFWRD--DAL 831 (961)
T ss_pred HhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccC-------CCCceEecCCCCCcchhCC--HHH
Confidence 9999988787788889999999999999999999999999999999841 1369999999998877665 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCceeEEEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceEEccCCCCCC
Q 005759 530 IYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGL 609 (678)
Q Consensus 530 ~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~~~~~~~ 609 (678)
...|+.++.+|+.|++++|.+|+++.|++++++.|+|++++....+.|+.+ +|+++|+||+|++..+. .
T Consensus 832 ~~~~~~~~~~r~~v~~~le~~R~~~~i~~~~e~~v~l~~~~~~~~~~l~~~--------~l~~~~~vs~~~~~~~~-~-- 900 (961)
T PRK13804 832 AEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVYIADPELLAALEGL--------DFAEICITSQLTVAAGE-A-- 900 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEEcCCHHHHHHHHHH--------HHHHHhhhCceEEecCC-C--
Confidence 778999999999999999999999999999999999987554444444432 49999999999996411 0
Q ss_pred ccCCCCCCcccccCCceEEEEEEeCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhccCCccccc
Q 005759 610 IRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMA 675 (678)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~~~~~~~~ 675 (678)
. ... +..+...++.|.|.++.++||||||+|++++|.++++++||.||.+||...+|+|+|
T Consensus 901 ~-~~~----~~~~~~~~~~~~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~~~~~~~~~ 961 (961)
T PRK13804 901 P-ADA----FRLDEVEGVAVVVEKAEGEKCARSWRITPDVGSDPYYPDVSPRDAKALREWKALAVA 961 (961)
T ss_pred c-chh----hcccccCceEEEEEeCCCCCCcCCCCCcCCcCCCCCCCCcChhHHHHHHhhhhccCC
Confidence 0 000 000111357889999999999999999999998888999999999999999999886
No 5
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4e-123 Score=1095.98 Aligned_cols=604 Identities=47% Similarity=0.840 Sum_probs=542.3
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||+|||+++||+++|+||||.|+++++|+|.+|+++||||||.+||+|||.|+|||||+||+|++ +.++++||+|++
T Consensus 138 ~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~-~~s~~~yv~f~l 216 (912)
T PRK05743 138 REDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD-KTSPSIYVAFPV 216 (912)
T ss_pred HHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccc-ccCceEEEEEEe
Confidence 4799999999999999999999999999999999999999999999999999999999999999976 889999999999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+.. +...+ .+.+++||||||||||||+||||||+++|++++.+ ++.||
T Consensus 217 ~~~~--~~~~~----~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~-------------------------~~~~i 265 (912)
T PRK05743 217 VDGK--LAAAF----KDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVE-------------------------GEKLI 265 (912)
T ss_pred cCcc--hhccc----CCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcC-------------------------CCEEE
Confidence 7532 11001 34689999999999999999999999999999864 46899
Q ss_pred EeccchHHHHHHhCC-ceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCC
Q 005759 161 VASDLVPTLEAKWGT-KLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL 239 (678)
Q Consensus 161 ia~~~~~~l~~~~~~-~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l 239 (678)
+++++++++..+.+. +++++++++|++|.|++|.||++++++|| |+++||++++|||+||+|||||++||+++++|||
T Consensus 266 ~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~pv-i~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L 344 (912)
T PRK05743 266 VAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFYDRDSPV-ILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGL 344 (912)
T ss_pred EeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCCCCeeeE-eCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCC
Confidence 999999999988776 48999999999999999999999999999 7899999999999999999999999999999999
Q ss_pred CcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchH--HH
Q 005759 240 PILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEG--FR 317 (678)
Q Consensus 240 ~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~--~~ 317 (678)
+++++||++|+|+++.++|.|+++. +|++.|++.|++.|.+++.+.+.|+||||||||+||++|+++|||+++++ ++
T Consensus 345 ~~~~~vd~~G~~~~~~~~~~Gl~v~-ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k 423 (912)
T PRK05743 345 EVLNPVDDDGRYTEEAPLFAGLFVF-KANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLR 423 (912)
T ss_pred CcccccCCCceEecCCcccCCcCHH-HhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHH
Confidence 9999999999999988999999995 89999999999999999999999999999999999999999999999997 99
Q ss_pred HHHHHHhhcCcccCCC----------------------------------------------------------------
Q 005759 318 QAAMDAIGQVKWVPPQ---------------------------------------------------------------- 333 (678)
Q Consensus 318 ~~~~~~i~~v~~~P~~---------------------------------------------------------------- 333 (678)
+++++++++++|+|++
T Consensus 424 ~~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~ 503 (912)
T PRK05743 424 EQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELD 503 (912)
T ss_pred HHHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccC
Confidence 9999999999998876
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 504 ~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG 583 (912)
T PRK05743 504 AKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHG 583 (912)
T ss_pred HHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEee
Confidence
Q ss_pred ----------------------CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCC-
Q 005759 334 ----------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG- 390 (678)
Q Consensus 334 ----------------------~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~- 390 (678)
++++||||+||||++++++++|++|+++.++++.+++++|||++||+++|+.+|.+.
T Consensus 584 ~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~ 663 (912)
T PRK05743 584 FTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAK 663 (912)
T ss_pred eEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCccc
Confidence 335899999999999999999999999999999999999999999999999887653
Q ss_pred CccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHH
Q 005759 391 NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLS 470 (678)
Q Consensus 391 ~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~ 470 (678)
..++..++..+|+|+++++++++++++++|++|+|++|++.+++|+++++||+||+.+|||||+..+++..|++++++|+
T Consensus 664 ~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~ 743 (912)
T PRK05743 664 DAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALY 743 (912)
T ss_pred ccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHH
Confidence 22333456789999999999999999999999999999999999998889999999999999998877777888999999
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 005759 471 AHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVA 550 (678)
Q Consensus 471 ~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~ 550 (678)
.+++.+++||+|||||+|||+|++|+.. ..+||+++.||+.++.+.+ .++.+.++.++++|.+++++++.+
T Consensus 744 ~~l~~l~~lLaPi~P~~aEelw~~l~~~-------~~~sv~~~~wP~~~~~~~~--~~~~~~~~~~~~~r~~v~~~i~~~ 814 (912)
T PRK05743 744 HILEALVRWLAPILSFTAEEIWQYLPGE-------REESVFLEEWPEVPELADD--EELLAKWEELLEVRDEVNKALEEA 814 (912)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhcccC-------CCCceEEecCCCCccccCC--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999632 1369999999998877655 567788999999999999999999
Q ss_pred hccccCCCCceeEEEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceEEccCCCCCCccCCCCCCcccccCCceEEEE
Q 005759 551 RTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIG 630 (678)
Q Consensus 551 r~~~~i~~~~~~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 630 (678)
|+++.|++++++.|+|++++ +.|..+ .++|+++|+||+|++... +.. . ... ....++.|.
T Consensus 815 r~~~~i~~~~~~~~~~~~~~----~~l~~~------~~~l~~~~~vs~v~~~~~-~~~-~---~~~-----~~~~~~~v~ 874 (912)
T PRK05743 815 RKEKVIGSSLEAEVTLYADA----ALLESL------GDELRFLLIVSQVEVADG-PAA-A---AAA-----EEVEGLAVK 874 (912)
T ss_pred hhccCCCcccceEEEEEcCH----HHHHHH------HHHHHHHhhhCceEEecC-ccc-c---ccc-----cccCceEEE
Confidence 99999999999999988742 445544 268999999999999652 110 0 000 112357899
Q ss_pred EEeCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhc
Q 005759 631 VSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 667 (678)
Q Consensus 631 v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~ 667 (678)
|.+++++||||||+|++++|.++++++||.||++||.
T Consensus 875 v~~~~~~kC~RCW~~~~~~~~~~~~~~~C~rC~~~~~ 911 (912)
T PRK05743 875 VEKAEGEKCERCWHYREDVGSDAEHPTLCGRCVSNVE 911 (912)
T ss_pred EEeCCCCCCCCcCCEeCCcCCCCCCCCcChhHHHHhc
Confidence 9999999999999999999888888999999999983
No 6
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-101 Score=922.68 Aligned_cols=549 Identities=26% Similarity=0.451 Sum_probs=472.4
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCcccccccc--ccCCCcccceEEEEE
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL--EYPEGHVSRSIYAVF 78 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Ev--ey~~~~~~~~~~v~f 78 (678)
+++|+|||+|+||+++|+||||.|++.++|+|.+|+++||||||.+||+|||.|+|+||++|+ +|++ +.++++||+|
T Consensus 131 ~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~-~~~~si~v~F 209 (1159)
T PLN02882 131 EKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKD-VSDPAVMVSF 209 (1159)
T ss_pred HHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCCCCCcchhhhhhhccc-CCCcEEEEEE
Confidence 478999999999999999999999999999999999999999999999999999999997776 7865 8999999999
Q ss_pred EeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceE
Q 005759 79 RMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVF 158 (678)
Q Consensus 79 ~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (678)
++.+.. .+.+++||||||||||||+||||||+++|++++... .++.
T Consensus 210 ~l~~~~-----------~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~-----------------------~~~~ 255 (1159)
T PLN02882 210 PIVGDP-----------DNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKY-----------------------TGKV 255 (1159)
T ss_pred EecCCC-----------CCcEEEEEeCCccccccCeEEEECCCCcEEEEEecC-----------------------CCeE
Confidence 996421 136899999999999999999999999999987531 1578
Q ss_pred EEEeccchHHHHHHhC------------CceEEEEeeecCcccCCEeeCCCC------CCcccEEEccCccccCCCCCce
Q 005759 159 IIVASDLVPTLEAKWG------------TKLVIKKTLAGSDLENCRYVHPVD------NRQCPVVIGGDYITTESGTGLV 220 (678)
Q Consensus 159 ~iia~~~~~~l~~~~~------------~~~~i~~~~~G~~l~g~~~~~P~~------~~~~pv~i~~~~V~~~~GTG~V 220 (678)
||+|+++++++.+..+ .+++++++++|++|+|++|.+|+. ++.+|| |+++||+++.|||+|
T Consensus 256 ~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~V-i~~~~V~~~~GTGiV 334 (1159)
T PLN02882 256 YIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRV-VADDYVTDDSGTGVV 334 (1159)
T ss_pred EEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEE-EccCccCCCCCccee
Confidence 9999999998876541 248999999999999999987762 357898 899999999999999
Q ss_pred eccCCCCHHHHHHHHHcCC-----CcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeecccccccccc
Q 005759 221 HTAPGHGQEDYVTSLKYGL-----PILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDW 295 (678)
Q Consensus 221 ~~aPahg~~D~~~~~~~~l-----~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~w 295 (678)
|+|||||++||.+|++||| +++++||++|+|++++++|.|+.|. +|++.|++.|++.|.+++.+.+.|+|||||
T Consensus 335 h~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~-eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cw 413 (1159)
T PLN02882 335 HCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVK-DADKDIIAAIKAKGRLVKSGSITHSYPFCW 413 (1159)
T ss_pred EecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHH-HhhHHHHHHHHHCCCccceeeeecCCCEee
Confidence 9999999999999999999 7999999999999999999999995 999999999999999999999999999999
Q ss_pred CCCCCeEEcccCcccccchHHHHHHHHHhhcCcccCCC------------------------------------------
Q 005759 296 RTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ------------------------------------------ 333 (678)
Q Consensus 296 r~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v~~~P~~------------------------------------------ 333 (678)
||++|+|||+++|||++++++++++++.+++++|+|++
T Consensus 414 R~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~ 493 (1159)
T PLN02882 414 RSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVI 493 (1159)
T ss_pred CCCCEEEEEecceeEEEcHHHHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEec
Confidence 99999999999999999999999999999999999986
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 494 ~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~e 573 (1159)
T PLN02882 494 GSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAE 573 (1159)
T ss_pred CcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEE
Confidence
Q ss_pred ------------------------------------------------------CCCCCCchhhhHHhhhcCC--CCcee
Q 005759 334 ------------------------------------------------------EAPGYGADVLRLWVSSVDY--TGDVM 357 (678)
Q Consensus 334 ------------------------------------------------------~~~~yGaD~lRl~la~~~~--~~D~~ 357 (678)
++++||||+||||++++++ .+|++
T Consensus 574 G~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~ 653 (1159)
T PLN02882 574 GLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLR 653 (1159)
T ss_pred ecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcc
Confidence 2358999999999997665 58899
Q ss_pred eChhhhhHH-HHHHHHHHHHHHHHHhcccC--------CCCCCccCC-CCCCHhHHHHHHHHHHHHHHHHHHHHhcccHH
Q 005759 358 IGPQVLRQM-SDIYRKLRGTLRYLLGNLHD--------WRVGNSISY-DDLPMIDQYALFQLENIVKNIRESYESYQFFK 427 (678)
Q Consensus 358 ~s~~~l~~~-~~~~~ki~n~~rf~l~nl~~--------~~~~~~~~~-~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~ 427 (678)
|+++.+... .++++++||++||+++++.+ |.|...... .....+|+||+++++++++.++++|++|+|++
T Consensus 654 fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~ 733 (1159)
T PLN02882 654 FKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYT 733 (1159)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 998887754 67899999999999988754 332110000 22367899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCC
Q 005759 428 IFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAA 507 (678)
Q Consensus 428 a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~ 507 (678)
|++.+++|++ ++||+||+.+|||+|+.. ++.++++++++|+++|..+++||+|||||+||+||++|+... +...
T Consensus 734 A~~~I~~Fv~-~lsN~YIe~~Kprl~~~~-~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~----~~~~ 807 (1159)
T PLN02882 734 VVPYLVKFID-NLTNIYVRFNRKRLKGRT-GEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVL----PGSE 807 (1159)
T ss_pred HHHHHHHHHH-HHhHHHHHhCCHhhhCCC-ChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhcccc----CCCC
Confidence 9999999996 599999999999999764 445678899999999999999999999999999999997410 0113
Q ss_pred cceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceeEEEEEeCChhHHH-HHHHhhccCCC
Q 005759 508 EFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLAS-RLREMCTAKHD 586 (678)
Q Consensus 508 ~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~~~~-~l~~~~~~~~~ 586 (678)
+|||++.||++++.+.+ .+++..++.++++++.++++.+ |....++.+++..+++.. ++...+ ++..+.
T Consensus 808 ~SVh~~~~P~~~~~~~d--~~le~~~~~~~~ii~~~r~~r~--~~~~~~~~pl~~~~~~~~-~~~~~~~~~~~~~----- 877 (1159)
T PLN02882 808 ESIHYCSFPQVDEGELD--ERIEQSVSRMQTVIELARNIRE--RHNKPLKTPLKEMVVVHP-DAEFLDDITGKLK----- 877 (1159)
T ss_pred CceeecCCCCcchhhcc--hhHHHHHHHHHHHHHHHHHHHH--HcCCCCCCccceeeEecC-CHHHHHHHHHHHH-----
Confidence 69999999998877766 6677889999999988887765 556678888776655544 333332 224442
Q ss_pred hhhhhhheeeeceEEcc
Q 005759 587 ADTLQRIFIISQVEVLP 603 (678)
Q Consensus 587 ~~~L~~l~~vs~v~~~~ 603 (678)
+.|.+.++|.+|.+.+
T Consensus 878 -~~i~~e~nv~~v~~~~ 893 (1159)
T PLN02882 878 -EYVLEELNVRSLVPCN 893 (1159)
T ss_pred -HHHHHhhCcceEEEee
Confidence 6788889999998864
No 7
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1.3e-99 Score=901.64 Aligned_cols=563 Identities=23% Similarity=0.426 Sum_probs=466.8
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCcccccccc--ccCCCcccceEEEEE
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL--EYPEGHVSRSIYAVF 78 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Ev--ey~~~~~~~~~~v~f 78 (678)
++||+|||+|+||+++|+||||.|++.++|+|.+|+++||||||.+||+|||.|+|+||++|| +|++ +.++++||+|
T Consensus 195 ~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd-~~dpsi~v~F 273 (1205)
T PTZ00427 195 VKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKD-TPDPSIIISF 273 (1205)
T ss_pred HHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhccccc-ccCceEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999 7876 8999999999
Q ss_pred EeeeCCCC----------------Ccccc----------cc--------cCCCceeEEeecCcceeccccEEEECCCCcE
Q 005759 79 RMVSAPPS----------------TSGLL----------NE--------FLPDLGLAVWTTTPWTVPANAAVAVNAKLQY 124 (678)
Q Consensus 79 ~l~~~~~~----------------~~~~l----------~~--------~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y 124 (678)
++.+.... +...+ .. ..++.+++||||||||||||+||||||+++|
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Y 353 (1205)
T PTZ00427 274 VLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTY 353 (1205)
T ss_pred ecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeE
Confidence 99652000 00000 00 0024689999999999999999999999999
Q ss_pred EEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHhCC---ceEEEEeeecCcccCCEeeCCC----
Q 005759 125 AVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGT---KLVIKKTLAGSDLENCRYVHPV---- 197 (678)
Q Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~---~~~i~~~~~G~~l~g~~~~~P~---- 197 (678)
+.++... +++.+|+|+++++.+.+..+. +++|+++++|++|.|++|.+|+
T Consensus 354 v~v~~~~-----------------------~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~ 410 (1205)
T PTZ00427 354 LRIHHVK-----------------------SNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFY 410 (1205)
T ss_pred EEEEecC-----------------------CCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccc
Confidence 9887521 257899999999999887653 5899999999999999999887
Q ss_pred -----CCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCC--C----cccccCCCCccccccCccCCceeccc
Q 005759 198 -----DNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL--P----ILSPVDDEGKFTEEAGKFSGLDVLGD 266 (678)
Q Consensus 198 -----~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l--~----~~~~vd~~G~~~~~~~~~~G~~v~~~ 266 (678)
.++.+|| |+++||++++|||+||+|||||++||.+|++||| | ++++||++|+|++++++|.|+.+. +
T Consensus 411 ~~~~~~~~~~pV-i~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~-d 488 (1205)
T PTZ00427 411 EKYNFKERAYKI-LADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIK-E 488 (1205)
T ss_pred cccccCCceeEE-EccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHH-H
Confidence 2557898 8899999999999999999999999999999999 2 688999999999999999999995 9
Q ss_pred chHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHHHHHHHhhcCcccCCC-------------
Q 005759 267 GNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ------------- 333 (678)
Q Consensus 267 ~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v~~~P~~------------- 333 (678)
|++.|++.|++.|.+++.+.+.|+||||||||+|+|||+++|||+++++++++++++++.++|+|++
T Consensus 489 A~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~ 568 (1205)
T PTZ00427 489 ADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNWIKDA 568 (1205)
T ss_pred hHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999988889898886
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 569 ~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFd 648 (1205)
T PTZ00427 569 KDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFE 648 (1205)
T ss_pred ccceeeeccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEEEEe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 649 Sg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNv 728 (1205)
T PTZ00427 649 SGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNY 728 (1205)
T ss_pred CCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCC
Confidence
Q ss_pred -----CCCCCCchhhhHHhhhc-CC-CCceeeChhhhh-HHHHHHHHHHHHHHHHHhcccCCCCCC--c------cCCCC
Q 005759 334 -----EAPGYGADVLRLWVSSV-DY-TGDVMIGPQVLR-QMSDIYRKLRGTLRYLLGNLHDWRVGN--S------ISYDD 397 (678)
Q Consensus 334 -----~~~~yGaD~lRl~la~~-~~-~~D~~~s~~~l~-~~~~~~~ki~n~~rf~l~nl~~~~~~~--~------~~~~~ 397 (678)
++++||||+||||+++. .+ ++|++|+++.+. ...++++++||++||+.+++.++.... . ....+
T Consensus 729 IDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~ 808 (1205)
T PTZ00427 729 PDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKN 808 (1205)
T ss_pred CCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCccccccc
Confidence 33599999999999864 44 689999999885 567888999999999999876432110 0 00124
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHH
Q 005759 398 LPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIV 477 (678)
Q Consensus 398 ~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~ 477 (678)
+..+|+||+++++++++.++++|++|+|++|++.+++|++ ++||||++++|+|||+...+ ..+.+++++|+++|+.++
T Consensus 809 ~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~-~lsnwYIe~~K~rl~~~~~~-~~~~~a~~tL~~vL~~~~ 886 (1205)
T PTZ00427 809 DNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIE-NLTNWYIRLNRDRMRGSLGE-ENCLQSLCTTYRTLHLFT 886 (1205)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HhccHHHHHcchhhccCCCc-HHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999997 59999999999999976432 345678999999999999
Q ss_pred HHHhchhhHHHHHHHHhCCCCcccc-------------C----CCCCcceeeccCCCCcccc-CCCChhHHHHHHHHHHH
Q 005759 478 RVIAPILPHLAEDVWQNLPFAYTLE-------------D----GSAAEFVFESKWPVLDEKW-RTFPVGEIYFWGKILEL 539 (678)
Q Consensus 478 ~lLaPilP~~aEEiw~~l~~~~~~~-------------~----~~~~~sV~~~~wP~~~~~~-~~~~~~~~~~~~~~~~l 539 (678)
+||||||||+|||||++|+...... + +...+|||++.||+.++.+ .+ .+++..++.++++
T Consensus 887 ~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d--~~~e~~~~~~~~i 964 (1205)
T PTZ00427 887 VLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIID--YEIIELIEKMKDV 964 (1205)
T ss_pred HHccccchHHHHHHHHHhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchhccC--HHHHHHHHHHHHH
Confidence 9999999999999999996310000 0 0013599999999987664 44 5566666666544
Q ss_pred HHHHHHHHHHHhccccCCCCceeE-EEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceEEcc
Q 005759 540 RTEVNKVLEVARTGKLIGSSLEAK-VYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLP 603 (678)
Q Consensus 540 r~~v~~~ie~~r~~~~i~~~~~~~-v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~ 603 (678)
..+++.+|+...++...+.. ++|...++...+.++.+. +.|++.++|.+|.+..
T Consensus 965 ----i~~~R~~R~~~~i~~r~pl~~~~v~~~~~~~~~~~~~~~------~~i~~e~nv~~v~~~~ 1019 (1205)
T PTZ00427 965 ----ILLGRVLRERRKVASKKPLKSITILHPNESYFKNFDQIS------NYIKEELNVLNVECSN 1019 (1205)
T ss_pred ----HHHHHHHHHHcCCCCCCccceeEEecCcHHHHHHHHHHH------HHHHHhhCcceEEEEe
Confidence 44556677776666555554 555554544455555553 6788889999998765
No 8
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-99 Score=898.70 Aligned_cols=536 Identities=30% Similarity=0.510 Sum_probs=458.9
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccc--cCCCcccceEEEEE
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE--YPEGHVSRSIYAVF 78 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Eve--y~~~~~~~~~~v~f 78 (678)
++||+|||+|+||+|+|.||||.|+++++|+|.+|+++||||||.+||+|||.|+|+||++||+ |++ +.++++||+|
T Consensus 134 ~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~-~~~~~~~v~f 212 (975)
T PRK06039 134 EEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKD-VKDPSVYVKF 212 (975)
T ss_pred HHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccc-cCCceEEEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999 865 8899999999
Q ss_pred EeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceE
Q 005759 79 RMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVF 158 (678)
Q Consensus 79 ~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (678)
++.+. .+.+++||||||||||||+||||||+++|++++.+ ++.
T Consensus 213 ~l~~~------------~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~-------------------------~~~ 255 (975)
T PRK06039 213 KLKGE------------ENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGG-------------------------GEV 255 (975)
T ss_pred EecCC------------CCCEEEEEECCccccccceEEEECCCCceEEEecC-------------------------CeE
Confidence 99531 23689999999999999999999999999998753 578
Q ss_pred EEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCC-----CcccEEEccCccccCCCCCceeccCCCCHHHHHH
Q 005759 159 IIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDN-----RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT 233 (678)
Q Consensus 159 ~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~-----~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~ 233 (678)
||+|+++++++.+ .+++++++++|++|.|++|.||++. +.+|| |+++||++++|||+||+|||||++||++
T Consensus 256 yi~a~~~~~~~~~---~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pi-i~~~~V~~~~GTG~V~~aPahg~~D~~~ 331 (975)
T PRK06039 256 YILAEALLEKVLK---EDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRV-VLADFVTTEDGTGIVHIAPAFGEDDFEV 331 (975)
T ss_pred EEEhHHHHHHHhh---cccEEEeeecCccccCCEEECCcccccCCcceeEE-EecCccCCCCCccceeeCCCCChHHHHH
Confidence 9999999998876 3678899999999999999999973 46999 7899999999999999999999999999
Q ss_pred HHHcCCCcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccc
Q 005759 234 SLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASV 313 (678)
Q Consensus 234 ~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~ 313 (678)
|++||||++++||++|+|++++++|.|+.+. +|++.|++.|+++|.+++.+.+.|+||||||||+|+++++++|||+++
T Consensus 332 ~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~-eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~ 410 (975)
T PRK06039 332 GKKYGLPVVCPVDDDGRFTEEVPDYAGKFVK-DADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRV 410 (975)
T ss_pred HHHcCCCccceeCCCceEcCCCccccCCCHH-HhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEec
Confidence 9999999999999999999988999999995 999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCcccCCC------------------------------------------------------------
Q 005759 314 EGFRQAAMDAIGQVKWVPPQ------------------------------------------------------------ 333 (678)
Q Consensus 314 ~~~~~~~~~~i~~v~~~P~~------------------------------------------------------------ 333 (678)
+++++++++++++++|+|+.
T Consensus 411 ~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~ 490 (975)
T PRK06039 411 TKIKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPID 490 (975)
T ss_pred HHHHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhh
Confidence 99999999888777665543
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 491 l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~ 570 (975)
T PRK06039 491 LHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTAL 570 (975)
T ss_pred hcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHh
Confidence
Q ss_pred -----------------------------------CCCCCCchhhhHHhhhcC-CCCceeeChhh-hhHHHHHHHHHHHH
Q 005759 334 -----------------------------------EAPGYGADVLRLWVSSVD-YTGDVMIGPQV-LRQMSDIYRKLRGT 376 (678)
Q Consensus 334 -----------------------------------~~~~yGaD~lRl~la~~~-~~~D~~~s~~~-l~~~~~~~~ki~n~ 376 (678)
++++||||+||||+++.. ..+|++|+++. +....++++++||+
T Consensus 571 ~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~ 650 (975)
T PRK06039 571 FDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNV 650 (975)
T ss_pred cCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHH
Confidence 335899999999998755 58999999999 67778889999999
Q ss_pred HHHHH--hcccCCCCC-CccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhcccc
Q 005759 377 LRYLL--GNLHDWRVG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLY 453 (678)
Q Consensus 377 ~rf~l--~nl~~~~~~-~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~ 453 (678)
++|+. +++.+|.+. ...+...+...|+|++++++.+++.++++|++|+|+.|++.+++|+ ++++|+|++.+|+|+|
T Consensus 651 ~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w 729 (975)
T PRK06039 651 YSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFW 729 (975)
T ss_pred HHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhc
Confidence 99976 555555432 1122345678999999999999999999999999999999999999 6799999999999999
Q ss_pred CCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHH
Q 005759 454 TGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFW 533 (678)
Q Consensus 454 ~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~ 533 (678)
+..++ ..+++++++|+.+|+.+++||||||||+|||||++|+.. ...+||+++.||++++.+.+ .++...+
T Consensus 730 ~~~~~-~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~------~~~~sv~~~~~P~~~~~~~d--~~le~~~ 800 (975)
T PRK06039 730 KEEDD-PDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTRE------DAPESVHLADWPEVDESLID--EELEEAM 800 (975)
T ss_pred cCCCc-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc------CCCCeeEecCCCCCccccCC--HHHHHHH
Confidence 87543 446678899999999999999999999999999999741 01369999999999887766 5666667
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCceeE-EEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceE
Q 005759 534 GKILELRTEVNKVLEVARTGKLIGSSLEAK-VYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVE 600 (678)
Q Consensus 534 ~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~-v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~ 600 (678)
+.++++. ..++.+|+...|+...+.. ++|...++ ..+.++.+. +.|+++++|.+|.
T Consensus 801 ~~~~~ii----~~~r~~r~~~~i~~~~pl~~~~v~~~~~-~~~~~~~~~------~~i~~~~nv~~v~ 857 (975)
T PRK06039 801 DLVREIV----SLGRSARKKAGIKVRQPLSKITVAEDEE-VAEALERYE------DLIKDELNVKEVP 857 (975)
T ss_pred HHHHHHH----HHHHHHHHHcCCCCCCccceEEEecCHH-HHHHHHHHH------HHHHHHhCcccch
Confidence 7666554 4445667666666555543 34444332 444555542 4577777777663
No 9
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-99 Score=848.73 Aligned_cols=500 Identities=29% Similarity=0.504 Sum_probs=445.3
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||+|||+|+||+|+|+||||.+.+.|+.+|.+||++|||||+.+||||||.|+||||+.||||++ ..+.-.|++|++
T Consensus 125 ~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e-~~g~L~~i~y~l 203 (877)
T COG0525 125 REQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKE-VEGKLYYIKYPL 203 (877)
T ss_pred HHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccchhhhhhccce-eeeeEEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999999999976 667778999999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCc-EEEEEecccccCCCCCccCCCCCCCCcccCCCceEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ-YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFI 159 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~-Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (678)
.+. +.+++|+||||+||+|++||+|||+++ |.
T Consensus 204 ~~~-------------~~~i~VATTRPEtmlgdtAVaVhP~DeRYk---------------------------------- 236 (877)
T COG0525 204 ADG-------------DGYLVVATTRPETLLGDTAVAVHPDDERYK---------------------------------- 236 (877)
T ss_pred CCC-------------CceEEEEecCccccccceEEEECCCChhhH----------------------------------
Confidence 753 358999999999999999999999983 42
Q ss_pred EEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCC
Q 005759 160 IVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL 239 (678)
Q Consensus 160 iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l 239 (678)
+|+|+.+.+|++++++|| |.++||++++|||+|+++|+|+++||+++++|+|
T Consensus 237 ---------------------------~LvGk~v~lPl~~r~IpI-iaD~~VD~eFGTG~VkItpahD~nD~e~~krh~L 288 (877)
T COG0525 237 ---------------------------HLVGKEVILPLVGREIPI-IADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNL 288 (877)
T ss_pred ---------------------------hhcCCEEecCCCCCeeee-ecCcccCCcCCCceEEecCCCCchhhhhhhcCCC
Confidence 478999999999999999 8899999999999999999999999999999999
Q ss_pred CcccccCCCCccccccC-ccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHH
Q 005759 240 PILSPVDDEGKFTEEAG-KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 318 (678)
Q Consensus 240 ~~~~~vd~~G~~~~~~~-~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~ 318 (678)
|+++++|++|+++++++ +|.||+++ +||++|++.|++.|++++.+.+.|+.|||||||.||++++++|||+++..+++
T Consensus 289 p~i~i~d~dG~in~~~~~~~~Gl~r~-eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~ 367 (877)
T COG0525 289 PLINIIDEDGRINEEAAGEFAGLDRF-EARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAK 367 (877)
T ss_pred CceEEECCCCeeccCCccccCCCcHH-HHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHH
Confidence 99999999999997775 99999997 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh--cCcccCCC---------------------------------------------------------------
Q 005759 319 AAMDAIG--QVKWVPPQ--------------------------------------------------------------- 333 (678)
Q Consensus 319 ~~~~~i~--~v~~~P~~--------------------------------------------------------------- 333 (678)
.++++.+ .++|+|+.
T Consensus 368 ~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~ 447 (877)
T COG0525 368 KALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDE 447 (877)
T ss_pred HHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCccccchhhhccCchhcccCCc
Confidence 9999999 89999987
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 448 DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMS 527 (877)
T COG0525 448 DVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMS 527 (877)
T ss_pred chhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCc
Confidence
Q ss_pred -----------CCCCCCchhhhHHhhhc-CCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHh
Q 005759 334 -----------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMI 401 (678)
Q Consensus 334 -----------~~~~yGaD~lRl~la~~-~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~ 401 (678)
++++||||+||||+++. ..++|++|+++.+++..++.||+||..||+++|+.+..+.... ......+
T Consensus 528 KS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~-~~~~~~~ 606 (877)
T COG0525 528 KSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLD-LLALSLA 606 (877)
T ss_pred ccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCccccc-ccccchH
Confidence 33599999999999875 7889999999999999999999999999999998765443211 1233689
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHh
Q 005759 402 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA 481 (678)
Q Consensus 402 D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLa 481 (678)
||||+++++++++.++++|++|+|..|.+.+++|+|+++|+||++++|++||.+ ...+++++.+|+.+|+.+++|||
T Consensus 607 drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~---~~~~~~a~~tL~~vl~~~lrLLh 683 (877)
T COG0525 607 DRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG---EEEKRAARATLYYVLDTLLRLLH 683 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc---HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999977 44556889999999999999999
Q ss_pred chhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCce
Q 005759 482 PILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLE 561 (678)
Q Consensus 482 PilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~ 561 (678)
|||||+|||||+.++.. +||+.++||.+.+...+ ++....++.+.+ +...++.+|++..+..+.+
T Consensus 684 PfmPfiTEei~q~l~~~---------~si~~~~~P~~~~~~~d--~~a~~~~~~l~~----ii~~iR~~r~e~~~~~~~~ 748 (877)
T COG0525 684 PFMPFITEEIWQKLPGT---------ESIHLASWPEVDEELID--EEAEKEFELLKE----IISAIRNLRAEMNLSPSAP 748 (877)
T ss_pred CCCccchHHHHHhcCCC---------CeEEeccCCCcchhhcc--HHHHHHHHHHHH----HHHHHHHHHHHcCCCCCCc
Confidence 99999999999999742 69999999999876555 445555555544 4556677888888888888
Q ss_pred eEEEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceEEcc
Q 005759 562 AKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLP 603 (678)
Q Consensus 562 ~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~ 603 (678)
..+.+... +...+.++.. ...|..+..++++++..
T Consensus 749 ~~~~~~~~-~~~~~~~~~~------~~~i~~~~~~~~i~~~~ 783 (877)
T COG0525 749 LKVVLVGS-EELEDRLEAN------EDDIKGLANLEELEILS 783 (877)
T ss_pred eeEEEecc-HhHHHHHHHH------HHHHHHhcCcceeeecc
Confidence 88777764 3344445433 36788899999999875
No 10
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.8e-97 Score=880.80 Aligned_cols=529 Identities=42% Similarity=0.709 Sum_probs=462.3
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCC---cccceEEEE
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEG---HVSRSIYAV 77 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~---~~~~~~~v~ 77 (678)
++||+|||+++||+|+|.||||+|+++++|+|.+|+++||||||.+||+|||.|+|+||++||+|+++ +.++++|++
T Consensus 129 ~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~ 208 (861)
T TIGR00392 129 REQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVK 208 (861)
T ss_pred HHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999998654 789999999
Q ss_pred EEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCce
Q 005759 78 FRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKV 157 (678)
Q Consensus 78 f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (678)
|++.+... .. .. .+..+++||||||||||||+||||||+++|++++.++ .++
T Consensus 209 f~~~~~~~-~~--~~--~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~-----------------------~~~ 260 (861)
T TIGR00392 209 FPVKKDKK-TY--LK--VKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNT-----------------------KVE 260 (861)
T ss_pred EEecCCcc-cc--cc--cccceEEEEECCcccccCCeeeeeCCCCceEEEEcCC-----------------------CCc
Confidence 99964211 00 00 0112899999999999999999999999999988541 146
Q ss_pred EEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcc------cEEEccCccccCCCCCceeccCCCCHHHH
Q 005759 158 FIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQC------PVVIGGDYITTESGTGLVHTAPGHGQEDY 231 (678)
Q Consensus 158 ~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~------pv~i~~~~V~~~~GTG~V~~aPahg~~D~ 231 (678)
.||+++++++++.++.+.+++++++++|.+|.|++|.||++++++ |++++++||++++|||+||+|||||++||
T Consensus 261 ~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~ 340 (861)
T TIGR00392 261 YFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDY 340 (861)
T ss_pred EEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHH
Confidence 899999999999887765688899999999999999999999888 98787799999999999999999999999
Q ss_pred HHHHHcCCCcccccCCCCccccccC-------ccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEc
Q 005759 232 VTSLKYGLPILSPVDDEGKFTEEAG-------KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFR 304 (678)
Q Consensus 232 ~~~~~~~l~~~~~vd~~G~~~~~~~-------~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r 304 (678)
+++++|||+++++||++|+|+.+.+ .|.|++++ +|++.|++.|++.|.+++.+.+.|+||||||||+||++|
T Consensus 341 ~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~-~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~ 419 (861)
T TIGR00392 341 EIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDII-KANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYR 419 (861)
T ss_pred HHHHHcCCCcccccCCCceECCcCccccccccccCCccHH-HhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEe
Confidence 9999999999999999999986654 48899995 899999999999999999999999999999999999999
Q ss_pred ccCcccccchHHHHHHHHHhhcCcccCCC---------------------------------------------------
Q 005759 305 ATEQWFASVEGFRQAAMDAIGQVKWVPPQ--------------------------------------------------- 333 (678)
Q Consensus 305 ~t~QWFi~~~~~~~~~~~~i~~v~~~P~~--------------------------------------------------- 333 (678)
+++|||++++++++++++++++++|+|+.
T Consensus 420 ~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~ 499 (861)
T TIGR00392 420 ATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELI 499 (861)
T ss_pred cCccccEEcHHHHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHH
Confidence 99999999999999998887776665543
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 500 ~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf 579 (861)
T TIGR00392 500 ELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWF 579 (861)
T ss_pred HHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHH
Confidence
Q ss_pred ---------------------------------------------CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHH
Q 005759 334 ---------------------------------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSD 368 (678)
Q Consensus 334 ---------------------------------------------~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~ 368 (678)
++++||||+||||+++.++++|++|+++.+....+
T Consensus 580 ~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~~~~~D~~fs~~~l~~~~~ 659 (861)
T TIGR00392 580 YSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQVVE 659 (861)
T ss_pred HHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhCCCCCCceECHHHHHHHHH
Confidence 23589999999999877889999999999988655
Q ss_pred -HHHHHHHHHHHHH--hcccCCCCC-CccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhH
Q 005759 369 -IYRKLRGTLRYLL--GNLHDWRVG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFY 444 (678)
Q Consensus 369 -~~~ki~n~~rf~l--~nl~~~~~~-~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y 444 (678)
+.++++|+++|++ +++.+|.+. ..++...+...|+|++++++.++++++++|++|+|++|++.+++|++.+++|+|
T Consensus 660 ~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Y 739 (861)
T TIGR00392 660 KYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWY 739 (861)
T ss_pred HHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998 888777653 222234567889999999999999999999999999999999999987899999
Q ss_pred HHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCC
Q 005759 445 FDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRT 524 (678)
Q Consensus 445 ~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~ 524 (678)
|+.+|||+|+...++..| +++++|+.+++.+++||+|||||+|||||++|+.. ...+||+.++||..++.+.+
T Consensus 740 i~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~------~~~~si~~~~wP~~~~~~~d 812 (861)
T TIGR00392 740 IRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGG------EEEESVHLNLWPEVDEEFID 812 (861)
T ss_pred HHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc------CCCCceeccCCCCCchhhcC
Confidence 999999999987665444 78899999999999999999999999999999742 01368999999998876654
Q ss_pred CChhH-------HHHHHHHHHHHHHHHHHHHHHhccccCCCCceeEEEEE
Q 005759 525 FPVGE-------IYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLF 567 (678)
Q Consensus 525 ~~~~~-------~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~v~I~ 567 (678)
.++ .+.++.++++|++++..++..++.+.|++++++.|.+.
T Consensus 813 --~~~~~~~~~l~~~i~~ir~ir~~~~~~~~~~~~~~~i~~~~~~~~~~~ 860 (861)
T TIGR00392 813 --EALEANMAIVREIVEAFLALRDAANKKLRQPLKELVIGKSLEAVLKAV 860 (861)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhChhhhhHhhcCEEcCCchhheEec
Confidence 333 35677888999999988988888888888888777653
No 11
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.9e-94 Score=849.13 Aligned_cols=503 Identities=27% Similarity=0.445 Sum_probs=442.7
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||+|||+|+||+|+|+||||.|+++|+|+|.+||++||||||.+||+|||.|+|+||++||+|++ +.+.++|++|++
T Consensus 128 ~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~-~~~~~~~i~f~~ 206 (874)
T PRK05729 128 TNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKE-VKGKLWHIRYPL 206 (874)
T ss_pred HHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhccccc-ccceEEEEEEEe
Confidence 4799999999999999999999999999999999999999999999999999999999999999966 888999999999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+. +.+++|||||||||+||+||||||++..-
T Consensus 207 ~~~-------------~~~l~vaTtrPeTl~~~~avaV~P~d~ry----------------------------------- 238 (874)
T PRK05729 207 ADG-------------SDYLVVATTRPETMLGDTAVAVNPEDERY----------------------------------- 238 (874)
T ss_pred cCC-------------CcEEEEEeCCcchhhcCeeEeECCCccHH-----------------------------------
Confidence 642 36899999999999999999999997310
Q ss_pred EeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCC
Q 005759 161 VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 240 (678)
Q Consensus 161 ia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~ 240 (678)
++|.|+++.||++++++|| |+++||++++|||+||++||||++||+++++|||+
T Consensus 239 -------------------------~~l~g~~~~~P~~~~~ipi-i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~ 292 (874)
T PRK05729 239 -------------------------KHLIGKTVILPLVGREIPI-IADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLP 292 (874)
T ss_pred -------------------------HHhcCCEEECCCCCCeeeE-ecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCC
Confidence 1477999999999999999 88999999999999999999999999999999999
Q ss_pred cccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHHHH
Q 005759 241 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAA 320 (678)
Q Consensus 241 ~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~ 320 (678)
+++++|++|++++++|+|.|++++ +|++.|++.|++.|++.+.+.+.|+||||||||+||++++++|||++|+++++++
T Consensus 293 ~~~~i~~~G~~~~~~~~~~G~~~~-~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~ 371 (874)
T PRK05729 293 MINIMDEDGTINENPGEYQGLDRF-EARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPA 371 (874)
T ss_pred cccccCCCCeEcCCCcccCCCCHH-HHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHH
Confidence 999999999999999999999996 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh--cCcccCCC-----------------------------------------------------------------
Q 005759 321 MDAIG--QVKWVPPQ----------------------------------------------------------------- 333 (678)
Q Consensus 321 ~~~i~--~v~~~P~~----------------------------------------------------------------- 333 (678)
+++++ .++|+|+.
T Consensus 372 ~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS 451 (874)
T PRK05729 372 LEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEAREKALLTQDEDVLDTWFSS 451 (874)
T ss_pred HHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCCcEEeCCcccccccccCeEeCCceecceecC
Confidence 99985 46666653
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 452 ~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP 531 (874)
T PRK05729 452 ALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDP 531 (874)
T ss_pred CccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCH
Confidence
Q ss_pred --CCCCCCchhhhHHhhhc-CCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHH
Q 005759 334 --EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLE 410 (678)
Q Consensus 334 --~~~~yGaD~lRl~la~~-~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~ 410 (678)
++++||||+||||+++. ++++|++|+++.+....+++++|||++||+++++.++.+....+...+...|+|++++++
T Consensus 532 ~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~ 611 (874)
T PRK05729 532 LDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLN 611 (874)
T ss_pred HHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHH
Confidence 33589999999999864 788999999999999999999999999999988766543222122356789999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 005759 411 NIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAED 490 (678)
Q Consensus 411 ~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEE 490 (678)
++++.++++|++|+|+.|++.+++|+++++||+|++.+||||| + . .+++++.+|+++++.+++||+|||||+|||
T Consensus 612 ~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~---~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEe 686 (874)
T PRK05729 612 RTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ-E---A-AKRATRATLAYVLEQILRLLHPFMPFITEE 686 (874)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---h-HHHHHHHHHHHHHHHHHHHHcccchhhHHH
Confidence 9999999999999999999999999988899999999999988 2 1 266889999999999999999999999999
Q ss_pred HHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceeEEEEEeCC
Q 005759 491 VWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDD 570 (678)
Q Consensus 491 iw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~v~I~~~~ 570 (678)
||++|+.. ...+||+.++||++++.+ + .++...++.+++ +.+.++.+|+...|+.+.+..+.|...+
T Consensus 687 lw~~l~~~------~~~~si~~~~~P~~~~~~-~--~~~~~~~~~~~~----ii~~ir~~r~~~~i~~~~~~~~~i~~~~ 753 (874)
T PRK05729 687 LWQKLAPL------GIEESIMLAPWPEADEAI-D--EAAEAEFEWLKE----LITAIRNIRAEMNIPPSKKLPLLLKGAD 753 (874)
T ss_pred HHHhcccC------CCCCceeecCCCCCCccc-C--HHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCeeeEEEEeCC
Confidence 99999742 012489999999987766 4 556666666654 5566778888888988888888777655
Q ss_pred hhHHHHHHHhhccCCChhhhhhheeeeceEEcc
Q 005759 571 ASLASRLREMCTAKHDADTLQRIFIISQVEVLP 603 (678)
Q Consensus 571 ~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~ 603 (678)
+...+.++.. .+.|+.++++++|++..
T Consensus 754 ~~~~~~l~~~------~~~i~~l~~~~~v~~~~ 780 (874)
T PRK05729 754 AEDRARLEAN------EAYIKRLARLESLEILA 780 (874)
T ss_pred HHHHHHHHHH------HHHHHHHhCcCceEEec
Confidence 5455556554 36799999999999854
No 12
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.7e-92 Score=845.44 Aligned_cols=508 Identities=23% Similarity=0.363 Sum_probs=431.2
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceE------
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSI------ 74 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~------ 74 (678)
++||++||+++||+|+|+||||.|+++++|+|.+|+++|||||+.+||+|||.|+|||||+||+|++ +.++++
T Consensus 153 ~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~-~~~~~~~~~~~~ 231 (995)
T PTZ00419 153 CNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEE-IEKPTKITIPGY 231 (995)
T ss_pred HHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhccccc-ccccceeecccc
Confidence 4799999999999999999999999999999999999999999999999999999999999999965 665554
Q ss_pred ----------EEEEEeeeCCCCCcccccccCCC-ceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCC
Q 005759 75 ----------YAVFRMVSAPPSTSGLLNEFLPD-LGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANK 143 (678)
Q Consensus 75 ----------~v~f~l~~~~~~~~~~l~~~~~~-~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~ 143 (678)
|++|++.+ .+ .+++||||||||||||+||||||++.+.
T Consensus 232 ~~~~~~g~l~~i~f~l~~-------------~~~~~l~vaTTrPeTl~g~~avav~P~d~~y------------------ 280 (995)
T PTZ00419 232 DKKVEVGVLWHFAYPLED-------------SGQEEIVVATTRIETMLGDVAVAVHPKDERY------------------ 280 (995)
T ss_pred ccccccceeEEEEEeecC-------------CCCcEEEEEeCCcchhhhCeEEEECCCCcHH------------------
Confidence 34444421 12 3899999999999999999999998410
Q ss_pred CCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCC-CCCcccEEEccC-ccccCCCCCcee
Q 005759 144 KSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPV-DNRQCPVVIGGD-YITTESGTGLVH 221 (678)
Q Consensus 144 ~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~-~~~~~pv~i~~~-~V~~~~GTG~V~ 221 (678)
++|.|++|.||+ +++++|| |+++ ||++++|||+||
T Consensus 281 ------------------------------------------~~l~G~~~~~Pl~~~~~ipi-i~~~~~V~~~~GTG~V~ 317 (995)
T PTZ00419 281 ------------------------------------------KKLHGKELIHPFIPDRKIPI-IADDELVDMEFGTGAVK 317 (995)
T ss_pred ------------------------------------------HHhcCCEEECCccCCCEEEE-EeCCcccCCCcCCCCeE
Confidence 146799999999 8999999 7899 999999999999
Q ss_pred ccCCCCHHHHHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCe
Q 005759 222 TAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPT 301 (678)
Q Consensus 222 ~aPahg~~D~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pv 301 (678)
++||||++||+++++||||++++||++|++++++|.|.|++++ +|++.|++.|++.|.+++.+.|.|+||||||||+||
T Consensus 318 ~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~-~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~i 396 (995)
T PTZ00419 318 ITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRF-DCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIV 396 (995)
T ss_pred eCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHH-HHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEE
Confidence 9999999999999999999999999999999988999999996 999999999999999999999999999999999999
Q ss_pred EEcccCcccccchHHHHHHHHHhh--cCcccCCC----------------------------------------------
Q 005759 302 IFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ---------------------------------------------- 333 (678)
Q Consensus 302 i~r~t~QWFi~~~~~~~~~~~~i~--~v~~~P~~---------------------------------------------- 333 (678)
++++++|||++|++++++++++++ .++|+|+.
T Consensus 397 e~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~ 476 (995)
T PTZ00419 397 EPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEP 476 (995)
T ss_pred EEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCce
Confidence 999999999999999999999875 23333321
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~arm 556 (995)
T PTZ00419 477 WVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARM 556 (995)
T ss_pred EEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHHHH
Confidence
Q ss_pred ------------------------------------------CC------------------------------------
Q 005759 334 ------------------------------------------EA------------------------------------ 335 (678)
Q Consensus 334 ------------------------------------------~~------------------------------------ 335 (678)
++
T Consensus 557 ~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~g 636 (995)
T PTZ00419 557 VMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNG 636 (995)
T ss_pred HHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCC
Confidence 22
Q ss_pred -CCCCchhhhHHhhh-cCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCC-Cc-----cCCCCCCHhHHHHHH
Q 005759 336 -PGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG-NS-----ISYDDLPMIDQYALF 407 (678)
Q Consensus 336 -~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~-~~-----~~~~~~~~~D~~il~ 407 (678)
++||||+||||+++ ++.++|++|+.+.+....++++||||++||+++++.++.+. .. .+...+..+|+|+++
T Consensus 637 i~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls 716 (995)
T PTZ00419 637 IPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILH 716 (995)
T ss_pred CcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHH
Confidence 38999999999986 56788999999999999999999999999999998765432 11 112345678999999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHH
Q 005759 408 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHL 487 (678)
Q Consensus 408 ~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~ 487 (678)
++++++++++++|++|+|+.|++.+++|++.++||+||+.+|||+|. ..++.++++++++|+.+|+.+++||+|||||+
T Consensus 717 ~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~-~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfi 795 (995)
T PTZ00419 717 RLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSK-QSDGERKQHAQDVLHTVLDIGLRLLHPMMPFI 795 (995)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhc-CCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999998853 23455567899999999999999999999999
Q ss_pred HHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceeEEEEE
Q 005759 488 AEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLF 567 (678)
Q Consensus 488 aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~v~I~ 567 (678)
|||||++|+.. ....+||++++||.+++.+.+ .++...++.++++- ..++.+|+...|+.+.+..+.|.
T Consensus 796 tEElw~~L~~~-----~~~~~si~~~~~P~~~~~~~d--~~~e~~~~~~~~ii----~~iR~~r~~~~i~~~~~l~~~i~ 864 (995)
T PTZ00419 796 TEELYQRLPNY-----LRKSESISIAKYPQPNPGWNN--EALDEEMKIIMSIV----KSIRSLIATLGIPNKTKPDCYVT 864 (995)
T ss_pred HHHHHHhhhcc-----CCCCCeeeccCCCCCCcccCC--HHHHHHHHHHHHHH----HHHHHHHHHcCCCCCCceeEEEE
Confidence 99999999742 001369999999998877665 55666677665554 44456677777776667666666
Q ss_pred eCChhHHHHHHHhhccCCChhhhhhheeeeceEEc
Q 005759 568 TDDASLASRLREMCTAKHDADTLQRIFIISQVEVL 602 (678)
Q Consensus 568 ~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~ 602 (678)
..++...+.++.. .+.|..+.++.+|.+.
T Consensus 865 ~~~~~~~~~~~~~------~~~i~~l~~~~~v~~~ 893 (995)
T PTZ00419 865 AKDAELIELIESA------ENLISTLAKIGSVSVI 893 (995)
T ss_pred eCCHHHHHHHHHH------HHHHHHhcCCCeeEEe
Confidence 6555455555554 2678899999999885
No 13
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=3.2e-92 Score=837.85 Aligned_cols=523 Identities=20% Similarity=0.328 Sum_probs=429.3
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||+|||+|+||+|+|+||||.|+++++|+|.+||++||||||.+||+|||.|+||||++||+|.+ +.++++| .|+.
T Consensus 221 ~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d-~~~~s~~-~~~~ 298 (1066)
T PLN02381 221 LNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYID-IKERTLL-KVPG 298 (1066)
T ss_pred HHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhc-cccchhh-cccC
Confidence 4799999999999999999999999999999999999999999999999999999999999999965 6666654 3332
Q ss_pred eeCCCCCccc--cc-cc-CCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCc
Q 005759 81 VSAPPSTSGL--LN-EF-LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKK 156 (678)
Q Consensus 81 ~~~~~~~~~~--l~-~~-~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (678)
.+....+.-. +. .+ ..+.+++|||||||||+|++||+|||++..
T Consensus 299 ~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~r-------------------------------- 346 (1066)
T PLN02381 299 YDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDER-------------------------------- 346 (1066)
T ss_pred CCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcc--------------------------------
Confidence 1110000000 00 00 012469999999999999999999999841
Q ss_pred eEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEc-cCccccCCCCCceeccCCCCHHHHHHHH
Q 005759 157 VFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIG-GDYITTESGTGLVHTAPGHGQEDYVTSL 235 (678)
Q Consensus 157 ~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~-~~~V~~~~GTG~V~~aPahg~~D~~~~~ 235 (678)
+++|.|++|.||++++.+|| |. ++||++++|||+||+|||||++||++++
T Consensus 347 ----------------------------y~~L~G~~~~~Pl~~~~ipI-i~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~ 397 (1066)
T PLN02381 347 ----------------------------YKHLHGKFAVHPFNGRKLPI-ICDAILVDPNFGTGAVKITPAHDPNDFEVGK 397 (1066)
T ss_pred ----------------------------hhhhCCCEEECCCCCCEEEE-EECCccccccCCCCcEEecCCCChHHHHHHH
Confidence 01577999999999999999 64 4699999999999999999999999999
Q ss_pred HcCCCcccccCCCCccccccC-ccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccch
Q 005759 236 KYGLPILSPVDDEGKFTEEAG-KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVE 314 (678)
Q Consensus 236 ~~~l~~~~~vd~~G~~~~~~~-~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~ 314 (678)
+||||++++||++|+++++++ +|.|++++ +|++.|++.|++.|++++.+.|.|+|||||||++||++++++|||++|+
T Consensus 398 ~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~-eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~ 476 (1066)
T PLN02381 398 RHNLEFINIFTDDGKINSNGGSEFAGMPRF-AAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCS 476 (1066)
T ss_pred HcCCCeeeeeCCCceeCCCCccccCCCCHH-HHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEch
Confidence 999999999999999998764 89999996 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----hcCcccCCC--------------------------------------------------------
Q 005759 315 GFRQAAMDAI-----GQVKWVPPQ-------------------------------------------------------- 333 (678)
Q Consensus 315 ~~~~~~~~~i-----~~v~~~P~~-------------------------------------------------------- 333 (678)
++++++++++ +.++|+|+.
T Consensus 477 ~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~ 556 (1066)
T PLN02381 477 SMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNES 556 (1066)
T ss_pred HHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchH
Confidence 9999999988 567777765
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 557 ~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~ 636 (1066)
T PLN02381 557 DALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGD 636 (1066)
T ss_pred hhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCC
Confidence
Q ss_pred --------------------------------C-------------------------------------CCCCCchhhh
Q 005759 334 --------------------------------E-------------------------------------APGYGADVLR 344 (678)
Q Consensus 334 --------------------------------~-------------------------------------~~~yGaD~lR 344 (678)
+ +++||||+||
T Consensus 637 ~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR 716 (1066)
T PLN02381 637 VPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALR 716 (1066)
T ss_pred CchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHH
Confidence 1 2489999999
Q ss_pred HHhhhc-CCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccC-CCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHh
Q 005759 345 LWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD-WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYES 422 (678)
Q Consensus 345 l~la~~-~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~-~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~ 422 (678)
||+++. ..++|++|+...+....++++||||++||+++++.+ |.+...++...+..+|+|++++++.++++++++|++
T Consensus 717 ~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~~~i~~v~~~~e~ 796 (1066)
T PLN02381 717 FALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDA 796 (1066)
T ss_pred HHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999864 457899999999999999999999999999998864 443212223456789999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCC-ChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccc
Q 005759 423 YQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGT-TSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTL 501 (678)
Q Consensus 423 ~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~-~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~ 501 (678)
|+|+.|++.+++|++.++||+||+.+|||+|++.. ++..+++++.+|+.+|..+++||||||||+|||||+.|+...
T Consensus 797 y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~-- 874 (1066)
T PLN02381 797 YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPK-- 874 (1066)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhc--
Confidence 99999999999999999999999999999997643 234567889999999999999999999999999999996310
Q ss_pred cCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCCceeEEEEEeCChhHHHHHHHh
Q 005759 502 EDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGK-LIGSSLEAKVYLFTDDASLASRLREM 580 (678)
Q Consensus 502 ~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~-~i~~~~~~~v~I~~~~~~~~~~l~~~ 580 (678)
.+...+||+.++||.+++.+.+ .++...++.++++... ++.+|+.. .|..+....+.+...++...+.++..
T Consensus 875 -~~~~~~SI~~~~~P~~~~~~~d--~~le~~~~~l~~ii~~----iR~lR~~~~~i~~k~~~~~~~~~~~~~~~~~l~~~ 947 (1066)
T PLN02381 875 -DHTRKDSIMISEYPSAVEAWTN--EKVEYEMDLVLSTVKC----LRSLRAEVLEKQKNERLPAFALCRNQEIAAIIKSH 947 (1066)
T ss_pred -cCCCCCeeEeCCCCCCCchhCC--HHHHHHHHHHHHHHHH----HHHHHHHccccccCcCCcEEEEcCCHHHHHHHHHH
Confidence 0011369999999998877766 5566667766555444 44556554 44444444444555455455556655
Q ss_pred hccCCChhhhhhheeeeceEEc
Q 005759 581 CTAKHDADTLQRIFIISQVEVL 602 (678)
Q Consensus 581 ~~~~~~~~~L~~l~~vs~v~~~ 602 (678)
. ..|..+..+++|.+.
T Consensus 948 ~------~~i~~l~~~~~v~~~ 963 (1066)
T PLN02381 948 Q------LEILTLANLSSLKVL 963 (1066)
T ss_pred H------HHHHHhhCCCeeeee
Confidence 3 578888999998874
No 14
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.9e-92 Score=836.84 Aligned_cols=510 Identities=24% Similarity=0.366 Sum_probs=432.2
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||++||+|+||+|+|+||||+|+++++|+|.+||++|||||+.+||+|||.|+|+||++||+|++-+.+.+.|++|++
T Consensus 141 ~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l 220 (1052)
T PRK14900 141 GEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPL 220 (1052)
T ss_pred HHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999653567777899999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+. +.+++||||||||||||+||||||++++.
T Consensus 221 ~~~-------------~~~l~vaTTrPeTl~~~~avaV~P~~~~y----------------------------------- 252 (1052)
T PRK14900 221 ADG-------------SGEIVVATTRPETMLGDTAVAVHPLDPRY----------------------------------- 252 (1052)
T ss_pred cCC-------------CcEEEEEECchhhhhcceeEEECCCcHHH-----------------------------------
Confidence 641 25799999999999999999999998410
Q ss_pred EeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEc-cCccccCCCCCceeccCCCCHHHHHHHHHcCC
Q 005759 161 VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIG-GDYITTESGTGLVHTAPGHGQEDYVTSLKYGL 239 (678)
Q Consensus 161 ia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~-~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l 239 (678)
.+|.|++|.||++++++|| |. ..||++++|||+||++||||++||+++++|||
T Consensus 253 -------------------------~~L~G~~~~~Pl~~~~ipI-i~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L 306 (1052)
T PRK14900 253 -------------------------MALHGKKVRHPITGRTFPI-VADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGL 306 (1052)
T ss_pred -------------------------HHhcCCEEECCCCCCeeEE-EecccccCcCCCCCeEEecCCCChhHHHHHHHcCC
Confidence 1477999999999999999 63 35899999999999999999999999999999
Q ss_pred CcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHHH
Q 005759 240 PILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQA 319 (678)
Q Consensus 240 ~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~ 319 (678)
+++++||++|+|+++.++|.|++++ +|++.|++.|++.|++++.+.|.|+|||||||++||++++++|||++++++++.
T Consensus 307 ~~~~~id~~G~~~~~~~~~~Gl~~~-ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~ 385 (1052)
T PRK14900 307 EMITVIGPDGRMTAEAGPLAGLDRF-EARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARP 385 (1052)
T ss_pred CccceECCCcEEecCCcccCCcCHH-HHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHH
Confidence 9999999999999988999999996 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--CcccCCC----------------------------------------------------------------
Q 005759 320 AMDAIGQ--VKWVPPQ---------------------------------------------------------------- 333 (678)
Q Consensus 320 ~~~~i~~--v~~~P~~---------------------------------------------------------------- 333 (678)
+++++++ ++|+|+.
T Consensus 386 ~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDv 465 (1052)
T PRK14900 386 AIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEACSTCGKAELRQDEDVLDT 465 (1052)
T ss_pred HHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCCCcEEecccccccccccCccceecCCceEEE
Confidence 9998864 5554442
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 466 WFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGN 545 (1052)
T PRK14900 466 WFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGN 545 (1052)
T ss_pred EEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCC
Confidence
Q ss_pred ------CCCCCCchhhhHHhhh-cCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccC-CCCCCHhHHHH
Q 005759 334 ------EAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSIS-YDDLPMIDQYA 405 (678)
Q Consensus 334 ------~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~-~~~~~~~D~~i 405 (678)
++++||+|+||||+++ +++++|++|+++.+....++++++||+.||+++++.+|.+....+ ...+...|+|+
T Consensus 546 vIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wi 625 (1052)
T PRK14900 546 VIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWI 625 (1052)
T ss_pred CCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHHHH
Confidence 3359999999999986 578899999999999989999999999999998887775432221 23456889999
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhh
Q 005759 406 LFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILP 485 (678)
Q Consensus 406 l~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP 485 (678)
+++++.++++++++|++|+|++|++.+++|+++++||+||+..||+||++ +...+++++++|+.+|+.+++||+||||
T Consensus 626 ls~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~--~~~~~~~~~~~L~~~L~~l~~LLaPfmP 703 (1052)
T PRK14900 626 LARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMP 703 (1052)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccC--CHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 99999999999999999999999999999998889999999999999875 3344567888999999999999999999
Q ss_pred HHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcee---
Q 005759 486 HLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEA--- 562 (678)
Q Consensus 486 ~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~--- 562 (678)
|+|||||++|+... ......+||++++||.+++ .+ .++...++.++++ ...++.+|+...|+...+.
T Consensus 704 ~~aEeiw~~L~~~~--~~~~~~~SV~~~~wP~~~~--~d--~~~e~~~~~v~~i----i~~iR~~R~~~~i~~~~~l~~~ 773 (1052)
T PRK14900 704 FITEELWHVLRAQV--GASAWADSVLAAEYPRKGE--AD--EAAEAAFRPVLGI----IDAVRNIRGEMGIPWKVKLGAQ 773 (1052)
T ss_pred HHHHHHHHHhcccc--ccCCCCCceeecCCCCCCc--cc--HHHHHHHHHHHHH----HHHHHHHHHHcCCCCCCccCCC
Confidence 99999999997420 0000126999999999765 23 4455555555444 4455667777777655554
Q ss_pred -EEEEEeCChhHHHHHHH-hhccCCChhhhhhheeeeceEEcc
Q 005759 563 -KVYLFTDDASLASRLRE-MCTAKHDADTLQRIFIISQVEVLP 603 (678)
Q Consensus 563 -~v~I~~~~~~~~~~l~~-~~~~~~~~~~L~~l~~vs~v~~~~ 603 (678)
.+.|...++...+.++. + ...|..++++++|.+..
T Consensus 774 ~~~~v~~~~~~~~~~l~~~~------~~~i~~l~~~~~v~~~~ 810 (1052)
T PRK14900 774 APVEIAVADPALRDLLQAGE------LARVHRVAGVEGSRLVV 810 (1052)
T ss_pred CeEEEEcCCHHHHHHHHHHH------HHHHHHhhCCCeeEeec
Confidence 46665555544455554 3 25688999999998854
No 15
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=9e-92 Score=830.55 Aligned_cols=497 Identities=25% Similarity=0.446 Sum_probs=423.0
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||+|||+|+||+|+|+||||.|+++++|+|.+||++|||||+.+||+|||.|+|+||++||+|.+ +.+.++|++|++
T Consensus 180 ~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e-~~~~~~~i~f~l 258 (958)
T PLN02943 180 TNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRV 258 (958)
T ss_pred HHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhccc-ccccEEEEEEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999976 788999999999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCc-EEEEEecccccCCCCCccCCCCCCCCcccCCCceEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ-YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFI 159 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~-Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (678)
.+. ++.+++||||||||||||+||||||+++ |.
T Consensus 259 ~~~------------~~~~l~vaTTrPeTl~~~~avavnP~d~ry~---------------------------------- 292 (958)
T PLN02943 259 AGG------------SEDFLTIATTRPETLFGDVAIAVNPEDDRYS---------------------------------- 292 (958)
T ss_pred cCC------------CCCEEEEEeCChhhhhcceEEEECCCCHHHH----------------------------------
Confidence 642 1257999999999999999999999996 53
Q ss_pred EEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCC-CCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcC
Q 005759 160 IVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVD-NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG 238 (678)
Q Consensus 160 iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~-~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~ 238 (678)
.|.|+++.||++ ++++|| |+++||++++|||+||++||||++||+++++||
T Consensus 293 ---------------------------~l~g~~~~~Pl~~~~~ipi-i~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~ 344 (958)
T PLN02943 293 ---------------------------KYIGKMAIVPMTYGRHVPI-IADRYVDKDFGTGVLKISPGHDHNDYLLARKLG 344 (958)
T ss_pred ---------------------------HHcCCEEECCCcCCCeeeE-EecCcccCCCCCceEEeCCCCChHHHHHHHHcC
Confidence 245889999996 999999 889999999999999999999999999999999
Q ss_pred CCcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHH
Q 005759 239 LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 318 (678)
Q Consensus 239 l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~ 318 (678)
||+++++|++|++++.. |+.++ +|++.|++.|++.|++++.+.+.|+|||||||++||++++++|||++++++++
T Consensus 345 L~~~~~id~~G~~~~~~----g~~~~-ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~ 419 (958)
T PLN02943 345 LPILNVMNKDGTLNEVA----GLYWF-EAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAE 419 (958)
T ss_pred CCceeeeCCCceeeccC----CccHH-HHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHH
Confidence 99999999999998754 55575 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh--cCcccCCC---------------------------------------------------------------
Q 005759 319 AAMDAIG--QVKWVPPQ--------------------------------------------------------------- 333 (678)
Q Consensus 319 ~~~~~i~--~v~~~P~~--------------------------------------------------------------- 333 (678)
+++++++ .++|+|+.
T Consensus 420 ~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 499 (958)
T PLN02943 420 KALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYGKDVE 499 (958)
T ss_pred HHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhhhcCCchh
Confidence 9998885 36665554
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 500 ~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~ 579 (958)
T PLN02943 500 IYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDS 579 (958)
T ss_pred eeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECC
Confidence
Q ss_pred -----------------CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCC---------
Q 005759 334 -----------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDW--------- 387 (678)
Q Consensus 334 -----------------~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~--------- 387 (678)
++++||+|++|||+++..+++|++|+++.+....+++++|||++||+++++.+.
T Consensus 580 ~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~ 659 (958)
T PLN02943 580 QGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHI 659 (958)
T ss_pred CCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 335899999999999877889999999999999999999999999999887431
Q ss_pred -----CCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhH
Q 005759 388 -----RVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTR 462 (678)
Q Consensus 388 -----~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r 462 (678)
++. .+...+...|+|++++++.++++++++|++|+|+.|++.+++|+++++||+|++.+|||||+...+ ..+
T Consensus 660 ~~~~~~~~--~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~-~~~ 736 (958)
T PLN02943 660 LACKFDKE--ESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDN-SAL 736 (958)
T ss_pred ccccCCcc--ccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCch-HHH
Confidence 111 111245789999999999999999999999999999999999998889999999999999976432 346
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHH
Q 005759 463 RSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTE 542 (678)
Q Consensus 463 ~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~ 542 (678)
++++++|+.+++.+++||+|||||+|||||++|+.. .+||+.++||+.+ .+.+ .++.+.++.+.++-
T Consensus 737 ~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~--------~~si~~~~wP~~~-~~~d--~~~~~~~~~v~~ii-- 803 (958)
T PLN02943 737 SRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR--------KEALIVSPWPQTS-LPKD--LKSIKRFENLQSLT-- 803 (958)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCC--------CCceeecCCCCCc-ccCC--HHHHHHHHHHHHHH--
Confidence 778999999999999999999999999999999743 3589999999975 3333 44555566665543
Q ss_pred HHHHHHHHhccccCCCCceeEEEEEeCChhHHHHHHHhhccCCChhhhhhheeee--ceEEc
Q 005759 543 VNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIIS--QVEVL 602 (678)
Q Consensus 543 v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs--~v~~~ 602 (678)
+.++.+|+...+..+....+.|...++ ..+.++.. .+.+..+..++ ++.+.
T Consensus 804 --~~iR~~r~~~~i~~~~~~~~~i~~~~~-~~~~~~~~------~~~i~~l~~~~~~~~~~~ 856 (958)
T PLN02943 804 --RAIRNARAEYSVEPAKRISASIVASAE-VIEYISKE------KEVLALLSRLDLQNVHFT 856 (958)
T ss_pred --HHHHHHHHHcCCCCCCcccEEEecChh-HHHHHHHH------HHHHHHHhcCcccccccc
Confidence 444566766677766666676766442 33444443 25677777653 66653
No 16
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=4.1e-91 Score=825.66 Aligned_cols=505 Identities=27% Similarity=0.445 Sum_probs=440.2
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||++||+|+||+|+|+||||.|.++|+|+|.+||++||||||.++|+|||.|+|+||++||+|++ +.+++.|++|++
T Consensus 125 ~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~-~~~~~~~i~f~~ 203 (861)
T TIGR00422 125 KNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKE-VKGKLYYIRYPL 203 (861)
T ss_pred HHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhccc-ccceEEEEEEEe
Confidence 4799999999999999999999999999999999999999999999999999999999999999966 789999999999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+. ++.+++||||||||||||+||||||++.+-
T Consensus 204 ~~~------------~~~~l~vaTtrPeTl~~~~av~V~P~~~ry----------------------------------- 236 (861)
T TIGR00422 204 ANG------------SKDYLVVATTRPETMFGDTAVAVHPEDERY----------------------------------- 236 (861)
T ss_pred cCC------------CCCEEEEEeCCcchhhhCeEEEECCCchHH-----------------------------------
Confidence 642 126899999999999999999999997410
Q ss_pred EeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCC
Q 005759 161 VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 240 (678)
Q Consensus 161 ia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~ 240 (678)
++|.|++|.||++++++|| |+++||++++|||+||++||||++||+++++|||+
T Consensus 237 -------------------------~~l~g~~~~~P~~~~~ipi-i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~ 290 (861)
T TIGR00422 237 -------------------------KHLIGKKVILPLTGRKIPI-IADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLE 290 (861)
T ss_pred -------------------------HHhcCCEEEcCCCCCccee-eecCCCCcccCCCceEecCCCChHHHHHHHHcCCC
Confidence 1477999999999999999 88999999999999999999999999999999999
Q ss_pred cccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHHHH
Q 005759 241 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAA 320 (678)
Q Consensus 241 ~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~ 320 (678)
+++++|++|+++++++.|.|++++ +|++.|++.|++.|.+.+.+.+.|+||||||||+|+++++++|||++++++++++
T Consensus 291 ~~~~id~~G~~~~~~~~~~G~~~~-~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~ 369 (861)
T TIGR00422 291 FINILDEDGLLNENAGKYQGLTRF-EARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKA 369 (861)
T ss_pred ccceeCCCCeEcCCCcccCCcCHH-HhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHH
Confidence 999999999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh--cCcccCCC-----------------------------------------------------------------
Q 005759 321 MDAIG--QVKWVPPQ----------------------------------------------------------------- 333 (678)
Q Consensus 321 ~~~i~--~v~~~P~~----------------------------------------------------------------- 333 (678)
+++++ +++|+|+.
T Consensus 370 ~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dV 449 (861)
T TIGR00422 370 LEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDV 449 (861)
T ss_pred HHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhhhccCCcccEEECCCc
Confidence 99886 46666653
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 450 lDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS 529 (861)
T TIGR00422 450 LDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKS 529 (861)
T ss_pred ccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcC
Confidence
Q ss_pred ---------CCCCCCchhhhHHhhhc-CCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHH
Q 005759 334 ---------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQ 403 (678)
Q Consensus 334 ---------~~~~yGaD~lRl~la~~-~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~ 403 (678)
++++||||++|||+++. +.++|++|+++.+....+++++|||+.||+.+++.++..-. .....+...|+
T Consensus 530 ~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~-~~~~~~~~~D~ 608 (861)
T TIGR00422 530 LGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELS-GGEEKLSLADR 608 (861)
T ss_pred CCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccc-cccccCCHHHH
Confidence 23589999999999864 45899999999999999999999999999988776542100 01123568999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhch
Q 005759 404 YALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPI 483 (678)
Q Consensus 404 ~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPi 483 (678)
|+++++++++++++++|++|+|+.|++.+++|+++++||+|++.+|||+|+.. +.++++++.+|+.+|+.+++||+||
T Consensus 609 wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~--~~~~~~~~~~l~~~l~~~~~lL~Pf 686 (861)
T TIGR00422 609 WILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGN--EAEKKAARDTLYYVLDKALRLLHPF 686 (861)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999887899999999999998643 3456788999999999999999999
Q ss_pred hhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceeE
Q 005759 484 LPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAK 563 (678)
Q Consensus 484 lP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~ 563 (678)
|||+|||||++|+.. .+||++++||.+++.+.+ .++...++.++++- ..++.+|+...|+.+.+..
T Consensus 687 ~P~itEelw~~L~~~--------~~si~~~~~P~~~~~~~d--~~~e~~~~~l~~ii----~~iR~~r~~~~i~~~~~l~ 752 (861)
T TIGR00422 687 MPFITEEIWQHFKEG--------ADSIMLQSYPVVDAEFVD--EEAEKAFELLKEII----VSIRNLKAESNIPPNAPLK 752 (861)
T ss_pred hhHHHHHHHHhCccc--------CCceeecCCCCcccccCC--HHHHHHHHHHHHHH----HHHHHHHHHcCCCCCCcce
Confidence 999999999999743 369999999998877766 56666677665554 4445667777777766766
Q ss_pred EEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceEEcc
Q 005759 564 VYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLP 603 (678)
Q Consensus 564 v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~ 603 (678)
+.+...++...+.++.. .+.|..++++++|.+..
T Consensus 753 ~~i~~~~~~~~~~l~~~------~~~I~~l~~v~~v~~~~ 786 (861)
T TIGR00422 753 VLLIYTEAETAERLKLN------AVDIKGAINFSEVEVVI 786 (861)
T ss_pred EEEEeCCHHHHHHHHHH------HHHHhhhcCCCceEeec
Confidence 66655454444555554 36789999999999865
No 17
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6e-89 Score=801.51 Aligned_cols=500 Identities=24% Similarity=0.393 Sum_probs=425.0
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||++||+++||+|+|+||||+|+++++|+|.+|+++|+|||+.+||+|||+|+|+|||+||+|++ +.+.++|++|++
T Consensus 127 ~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~-~~~~~~~ikf~~ 205 (800)
T PRK13208 127 RELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRE-REGKLNYIKFPV 205 (800)
T ss_pred HHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhcccc-ccceEEEEEEEe
Confidence 4799999999999999999999999999999999999999999999999999999999999999966 788999999998
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+ +.+++||||||||||||+||||||+++..
T Consensus 206 ~~--------------~~~l~v~TtrPeTl~g~~ai~v~p~~~~~----------------------------------- 236 (800)
T PRK13208 206 ED--------------GEEIEIATTRPELLPACVAVVVHPDDERY----------------------------------- 236 (800)
T ss_pred cC--------------CCEEEEEeCCcchhhhCeEEEECCCchHH-----------------------------------
Confidence 52 25799999999999999999999997410
Q ss_pred EeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCC
Q 005759 161 VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 240 (678)
Q Consensus 161 ia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~ 240 (678)
.+|.|+++.||++++++|| |+++||++++|||+||++|+||++||+++++|||+
T Consensus 237 -------------------------~~l~g~~~~~P~~~~~ipi-i~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~ 290 (800)
T PRK13208 237 -------------------------KHLVGKTAIVPLFGVEVPI-LADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLP 290 (800)
T ss_pred -------------------------HHhcCCEEEcCCCCCcceE-ECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCC
Confidence 1467999999999999999 78999999999999999999999999999999999
Q ss_pred cccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHHHH
Q 005759 241 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAA 320 (678)
Q Consensus 241 ~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~ 320 (678)
++++||++|+++++.|.|.|+++. +|++.|++.|++.|.+++.+.+.|+||||||||+|+++++++|||++++++++++
T Consensus 291 ~~~~i~~~G~~~~~~g~~~G~~~~-~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~ 369 (800)
T PRK13208 291 TRIIIDEDGRMTEAAGKLAGLTIE-EARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEEL 369 (800)
T ss_pred cccccCCCceEecCCcccCCCCHH-HHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHH
Confidence 999999999999999999999995 9999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhcCcccCCC-------------------------------------------------------------------
Q 005759 321 MDAIGQVKWVPPQ------------------------------------------------------------------- 333 (678)
Q Consensus 321 ~~~i~~v~~~P~~------------------------------------------------------------------- 333 (678)
++++++++|+|+.
T Consensus 370 ~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~ 449 (800)
T PRK13208 370 LERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPTKDEPPGYKCPQCGSP 449 (800)
T ss_pred HHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCchhhccccccccccCCc
Confidence 8877655443321
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 450 ~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~ 529 (800)
T PRK13208 450 GFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDP 529 (800)
T ss_pred CEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECC
Confidence
Q ss_pred -----------------CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCC
Q 005759 334 -----------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD 396 (678)
Q Consensus 334 -----------------~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~ 396 (678)
++++||+|++|||++++++.+|++|+++.+..+.+++++|||++||++ ++.+ . ....+..
T Consensus 530 ~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~-~~~~-~-~~~~~~~ 606 (800)
T PRK13208 530 DGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVL-HFSA-D-PEPDKAE 606 (800)
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHH-hccc-c-cccCccc
Confidence 235899999999999888999999999999999999999999999987 3332 1 0111123
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHH
Q 005759 397 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSI 476 (678)
Q Consensus 397 ~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l 476 (678)
.+...|+|++++++.+++++.++|++|+|++|++.+++|+++++||+||+.+|||+|+...+ ..+++++++++++++.+
T Consensus 607 ~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~-~~~~~~~~~l~~~l~~l 685 (800)
T PRK13208 607 VLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEE-EEQKSARYTLYTVLDTL 685 (800)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCc-HHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999998889999999999999876432 23668889999999999
Q ss_pred HHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005759 477 VRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLI 556 (678)
Q Consensus 477 ~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i 556 (678)
++||+|||||+|||||++|+ . +||+.+.||+.++...+ .++...++.+.++ +..++.+|+...+
T Consensus 686 ~~LLaPf~P~iaEelw~~L~-~---------~si~~~~wP~~~~~~~~--~~~~~~~~~v~~i----i~~iR~~r~~~~i 749 (800)
T PRK13208 686 LRLLAPFLPFITEEVWSWLY-G---------GSVHRASWPEPDEELID--EEDEELGELAKEI----LSAVRKYKSEAGL 749 (800)
T ss_pred HHHhcccchhhHHHHHHhCC-C---------CceEeccCCCCCccccc--HHHHHHHHHHHHH----HHHHHHHHHHcCC
Confidence 99999999999999999997 3 58999999998765443 3444444444433 3333444544444
Q ss_pred CCCceeEEEEEeCChhHHHHHHHhhccCCChhhhhhheeeeceEEccC
Q 005759 557 GSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPS 604 (678)
Q Consensus 557 ~~~~~~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~~ 604 (678)
+...+..+.+...++. .+.++.+. +.|+++++|++|.+..+
T Consensus 750 ~~~~~l~~~~~~~~~~-~~~~~~~~------~~l~~~~~~~~v~~~~~ 790 (800)
T PRK13208 750 SLNAPLKKVEVYGPAD-LELLEAAE------EDLKAAGNIEELELVEG 790 (800)
T ss_pred CcCCccceEEEecchH-HHHHHHHH------HHHHHHhCcCeEEEecC
Confidence 4344443333333444 56666653 68999999999999763
No 18
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-88 Score=800.47 Aligned_cols=495 Identities=23% Similarity=0.362 Sum_probs=425.5
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccce--EEEEE
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRS--IYAVF 78 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~--~~v~f 78 (678)
++||+|||+|+||+|+|.||||.|+++++|+|.+|+++||||||.+||+|||.|+|+||++|+++++ ..+++ .||+|
T Consensus 86 ~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e-~~~~~~~~~ikf 164 (897)
T PRK12300 86 KEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGE-EPEIVEYTLIKF 164 (897)
T ss_pred HHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCC-CCCcceEEEEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999865 34555 47888
Q ss_pred EeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceE
Q 005759 79 RMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVF 158 (678)
Q Consensus 79 ~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (678)
+ .. .+.+++||||||||||||+|+||||+++|++++.+ ++.
T Consensus 165 ~--~~------------~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~-------------------------~e~ 205 (897)
T PRK12300 165 E--ES------------EDLILPAATLRPETIFGVTNLWVNPDATYVKAEVD-------------------------GEK 205 (897)
T ss_pred e--CC------------CceEEEEEECCcchhccceEEEECCCCcEEEEEEC-------------------------CEE
Confidence 7 11 24689999999999999999999999999999864 588
Q ss_pred EEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcC
Q 005759 159 IIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG 238 (678)
Q Consensus 159 ~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~ 238 (678)
||+++.+++++..+. .+++++++++|++|.|++|.||++++.+|| ++++||+++.|||+||+|||||++||.++++++
T Consensus 206 ~i~a~~~~~~~~~~~-~~~~~~~~~~G~~l~G~~~~~Pl~~~~ipi-l~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~ 283 (897)
T PRK12300 206 WIVSKEAAEKLSFQD-RDVEIIEEIKGSELIGKKVKNPVTGKEVPI-LPADFVDPDNGTGVVMSVPAHAPYDYVALRDLK 283 (897)
T ss_pred EEEeHHHHHHHhcCc-CCceEEEEeehHHhcCCEEECCCCCCeEEE-eccCeeecCCCeeeEEeCCCCCHHHHHHHHHhc
Confidence 999999999987763 368899999999999999999999999999 889999999999999999999999999999998
Q ss_pred --------CCccccc-----------------------C---------------CCCccccccCccCCceecccchHHHH
Q 005759 239 --------LPILSPV-----------------------D---------------DEGKFTEEAGKFSGLDVLGDGNVAVV 272 (678)
Q Consensus 239 --------l~~~~~v-----------------------d---------------~~G~~~~~~~~~~G~~v~~~~~~~ii 272 (678)
|+++.++ | .+|+|++++|.|.|+.+. +|++.|+
T Consensus 284 ~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~-eA~~~I~ 362 (897)
T PRK12300 284 KNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVR-EAREKIT 362 (897)
T ss_pred cccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHH-HHHHHHH
Confidence 6653333 3 489999888999999995 9999999
Q ss_pred HHHHhcCceeeeeccccccccccCCCCCeEEcc-cCcccccch--HHHHHHHHHhhcCcccCCC----------------
Q 005759 273 KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA-TEQWFASVE--GFRQAAMDAIGQVKWVPPQ---------------- 333 (678)
Q Consensus 273 ~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~-t~QWFi~~~--~~~~~~~~~i~~v~~~P~~---------------- 333 (678)
+.|++.|.+.+...+.| +|+|||||+|+|+++ ++|||++++ ++++++++++++++|+|+.
T Consensus 363 ~~L~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ 441 (897)
T PRK12300 363 KDLIEKGIADIMYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRA 441 (897)
T ss_pred HHHHHCCCeEEEEecCC-CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHccCEEECHHHHHHHHHHHhhhhhcc
Confidence 99999999999887778 788999999999997 599999997 7999998888877777764
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 442 ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~ 521 (897)
T PRK12300 442 CARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEM 521 (897)
T ss_pred eeeccccCCcCCccCCEEeeeccccchhhhHHHHHHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------------------CCCCCCchhhh
Q 005759 334 ---------------------------------------------------------------------EAPGYGADVLR 344 (678)
Q Consensus 334 ---------------------------------------------------------------------~~~~yGaD~lR 344 (678)
++++||||++|
T Consensus 522 ~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalR 601 (897)
T PRK12300 522 REEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVR 601 (897)
T ss_pred HHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHH
Confidence 33589999999
Q ss_pred HHhhh-cCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhc
Q 005759 345 LWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESY 423 (678)
Q Consensus 345 l~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~ 423 (678)
||+++ +++.+|.+|+++.+....+++++++|+++++.+... ...+...|+|+++++++++++++++|++|
T Consensus 602 l~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~---------~~~~~~~D~wils~l~~~i~~v~~~~e~~ 672 (897)
T PRK12300 602 LYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIGG---------EEELRFIDKWLLSRLNRIIKETTEAMESF 672 (897)
T ss_pred HHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC---------ccccCHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99986 688999999999999999999999999998764321 11346789999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccC
Q 005759 424 QFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLED 503 (678)
Q Consensus 424 ~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~ 503 (678)
+|++|++.++.|+.+ .+|+|++.+|| +++.+++++++.+++||+|||||+|||||+.|+..
T Consensus 673 ~~~~A~~~i~~~l~~-~~n~Yi~~~k~-------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~----- 733 (897)
T PRK12300 673 QTRDAVQEAFYELLN-DLRWYLRRVGE-------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE----- 733 (897)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHhcch-------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-----
Confidence 999999999877765 57999998776 46678999999999999999999999999999743
Q ss_pred CCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceeEEEEEeCChhHHHHHHHh
Q 005759 504 GSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREM 580 (678)
Q Consensus 504 ~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~~~~~l~~~ 580 (678)
+||+++.||+.++.+.+ .+++..++.++++-+.+++ +|+...++ +.+|+|++++++..+.+..+
T Consensus 734 ----~sv~~~~wP~~~~~~~d--~~~~~~~~~~~~~i~~ir~----~~~~~~~~---~~~~~i~~~~~~~~~~~~~~ 797 (897)
T PRK12300 734 ----GFVSLEKWPEPDESKID--EEAELAEEYVKRLIEDIRE----ILKVAKIK---PKKVYIYVAPDWKYEVLEIA 797 (897)
T ss_pred ----CeEEeCCCCCCCcccCC--HHHHHHHHHHHHHHHHHHH----HHHHcCCC---CceEEEEECCHHHHHHHHHH
Confidence 69999999999877665 5667777777666555543 44433443 24788888777766655444
No 19
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.4e-84 Score=775.04 Aligned_cols=517 Identities=21% Similarity=0.294 Sum_probs=417.2
Q ss_pred ChHHhhhcccccccCccccCC--hHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEE--E
Q 005759 1 MASFKRYGVWADWNNPYLTLD--PEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY--A 76 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d--~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~--v 76 (678)
+++|+|||+++||+|+|.||| |.|+++|+|+|.+|+++|+||||.+||+|||.|+|+|||+|++|++ +.+++.| +
T Consensus 195 ~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e-~~~~~~y~~i 273 (1084)
T PLN02959 195 KEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGE-GVGPQEYVLI 273 (1084)
T ss_pred HHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCC-CCCcceeEEE
Confidence 468999999999999999999 9999999999999999999999999999999999999999999976 7788887 5
Q ss_pred EEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCc
Q 005759 77 VFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKK 156 (678)
Q Consensus 77 ~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (678)
+|++.+........++ .++.+++||||||||||||+|+||||+.+|+++++++ +
T Consensus 274 kf~v~~~~~~~~~~~~--~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~------------------------~ 327 (1084)
T PLN02959 274 KMEVLPPFPGKLKALE--GKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEIND------------------------T 327 (1084)
T ss_pred EEeecCcchhhhhhcC--CCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecC------------------------C
Confidence 6887642100001111 1347899999999999999999999999999999752 5
Q ss_pred eEEEEeccchHHHHHHh--CC--ceEEEEeeecCcccCCEeeCCCCCCc-ccEEEccCccccCCCCCceeccCCCCHHHH
Q 005759 157 VFIIVASDLVPTLEAKW--GT--KLVIKKTLAGSDLENCRYVHPVDNRQ-CPVVIGGDYITTESGTGLVHTAPGHGQEDY 231 (678)
Q Consensus 157 ~~~iia~~~~~~l~~~~--~~--~~~i~~~~~G~~l~g~~~~~P~~~~~-~pv~i~~~~V~~~~GTG~V~~aPahg~~D~ 231 (678)
+.||+++.++.++..+. +. +++++++++|++|+|++|.||+++.+ +|| +++.||+++.|||+||+|||||++||
T Consensus 328 e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~i-lp~~~V~~~~GTGvV~~vPah~pdDy 406 (1084)
T PLN02959 328 EVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYA-LPMLTILTDKGTGVVTSVPSDSPDDY 406 (1084)
T ss_pred eEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeE-eceEEEeCCCCeeeEEeCCCCCHHHH
Confidence 78999999998765442 11 57899999999999999999999877 888 89999999999999999999999999
Q ss_pred HH----------HHHcCC--------CcccccCCCCc----------------------------------cccc---cC
Q 005759 232 VT----------SLKYGL--------PILSPVDDEGK----------------------------------FTEE---AG 256 (678)
Q Consensus 232 ~~----------~~~~~l--------~~~~~vd~~G~----------------------------------~~~~---~~ 256 (678)
.+ +++||| +++++||..|. |++. .|
T Consensus 407 ~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g 486 (1084)
T PLN02959 407 MALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVG 486 (1084)
T ss_pred HHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCc
Confidence 98 577887 45777787663 4444 57
Q ss_pred ccCCceecccchHHHHHHHHhcCceee-eeccccccccccCCCCCeEEcccCcccccch--HHHHHHHHHhhcCcccCCC
Q 005759 257 KFSGLDVLGDGNVAVVKYLDEQMSLIM-EEPYEHKYPYDWRTKKPTIFRATEQWFASVE--GFRQAAMDAIGQVKWVPPQ 333 (678)
Q Consensus 257 ~~~G~~v~~~~~~~ii~~L~~~g~l~~-~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~--~~~~~~~~~i~~v~~~P~~ 333 (678)
.|.|+.|. +|++.|++.|++.|.++. .+. ..|+|||||+||++++++|||++++ +||+++++++++++|+|+.
T Consensus 487 ~~~G~~v~-eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~ 562 (1084)
T PLN02959 487 EYAGRKVQ-EAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDE 562 (1084)
T ss_pred CcCCcCHH-HHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHH
Confidence 89999995 999999999999997764 343 2689999999999999999999997 7999999999988888876
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 563 ~~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~w 642 (1084)
T PLN02959 563 TRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFV 642 (1084)
T ss_pred HHHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 643 F~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKS 722 (1084)
T PLN02959 643 FCGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKS 722 (1084)
T ss_pred ecCCCcccccCCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCcccc
Confidence
Q ss_pred ---------CCCCCCchhhhHHhhhc-CCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHH
Q 005759 334 ---------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQ 403 (678)
Q Consensus 334 ---------~~~~yGaD~lRl~la~~-~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~ 403 (678)
++++||||++|||++++ ++.+|.+|+++... ...++++|+++|+.+++.... ...+...+..+|+
T Consensus 723 kGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n---~~~~~l~n~~~~~~~~~~~~~--~~~~~~~~~~~D~ 797 (1084)
T PLN02959 723 TGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETAN---AAILRLTKEIAWMEEVLAAES--SLRTGPPSTYADR 797 (1084)
T ss_pred CCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHH---HHHHHHHHHHHHHHHhhhhhc--ccCCcccCCHHHH
Confidence 33599999999999864 77899999987664 457788888888766543200 0001123567999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhH-HHhhhc--cccCCCCChHhHHHHHHHHHHHHHHHHHHH
Q 005759 404 YALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFY-FDVAKD--RLYTGGTTSFTRRSCQTVLSAHLLSIVRVI 480 (678)
Q Consensus 404 ~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y-~~~~K~--rl~~~~~~~~~r~~~~~~l~~~l~~l~~lL 480 (678)
|++++++.++++++++|++|+|++|++.. +| |+..|+ |+|++.. ...+++|+.+|+.+++||
T Consensus 798 wils~l~~~i~~v~~a~e~y~f~~A~~~~----------~Yel~~~k~~yr~~~~~~-----~~~~~~L~~vl~~~l~LL 862 (1084)
T PLN02959 798 VFENEINIAIAETEKNYEAMMFREALKSG----------FYDLQAARDEYRLSCGSG-----GMNRDLVWRFMDVQTRLI 862 (1084)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHH----------HHHHHHhHHHHhhccccc-----hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999953 35 566666 7786531 145778999999999999
Q ss_pred hchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHH----HHHHHHHHHHHHHHHHHHHhccccC
Q 005759 481 APILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIY----FWGKILELRTEVNKVLEVARTGKLI 556 (678)
Q Consensus 481 aPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~----~~~~~~~lr~~v~~~ie~~r~~~~i 556 (678)
||||||+|||||+.|... .+||+++.||.++. .+ .++.. .++.+..+|+.++...+..|++|.+
T Consensus 863 aP~~PfiaEEiW~~l~~~--------~~sI~~~~wP~~~~--~d--~~~e~~~~~l~~~i~~iR~~~~~~~~~~~~~k~~ 930 (1084)
T PLN02959 863 TPICPHYAEHVWREILKK--------EGFAVTAGWPVAGE--PD--LTLKRANKYLQDSIVSFRKLLQKQLAGSKKAKKG 930 (1084)
T ss_pred hhhhhHHHHHHHHhccCC--------CCeEEecCCCCCCc--cC--HHHHHHHHHHHHHHHHHHHhHHHhchhhhhcCCC
Confidence 999999999999999422 36999999998763 23 33333 2455666777777666777776665
Q ss_pred CCC-----ceeEEEEEeCCh---hHHHHHHHhh
Q 005759 557 GSS-----LEAKVYLFTDDA---SLASRLREMC 581 (678)
Q Consensus 557 ~~~-----~~~~v~I~~~~~---~~~~~l~~~~ 581 (678)
+.+ .+.+|+|+++++ |..+.|+.+.
T Consensus 931 ~~~~~~~~~~~~v~IyVA~~yp~Wq~~~l~~l~ 963 (1084)
T PLN02959 931 GAPVTLPEKKLAGLIYVAEKYDGWKEECLRILQ 963 (1084)
T ss_pred CCCcccccCcceEEEEECCCChHHHHHHHHHHH
Confidence 543 234588999887 7777766664
No 20
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.9e-83 Score=760.42 Aligned_cols=501 Identities=19% Similarity=0.302 Sum_probs=419.9
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcc-cceEEEEEE
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHV-SRSIYAVFR 79 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~-~~~~~v~f~ 79 (678)
++||++||+++||+|+|.||||.|.++++|+|.+|+++|+||||.+||+|||.|+|+||++|++++++.. ...++++|+
T Consensus 125 ~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~ 204 (938)
T TIGR00395 125 ESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFE 204 (938)
T ss_pred HHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999866432 456889999
Q ss_pred eeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEE
Q 005759 80 MVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFI 159 (678)
Q Consensus 80 l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (678)
+.+. +.+++|||||||||||++||||||+++|++++.+ ++.|
T Consensus 205 ~~~~-------------~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~-------------------------~e~~ 246 (938)
T TIGR00395 205 LEDG-------------AFYFVAATLRPETVYGVTNCWVNPTITYVIAEVG-------------------------GEKW 246 (938)
T ss_pred cCCC-------------ceEEEEeeCCcchhhcceeEEECCCCcEEEEEeC-------------------------CcEE
Confidence 8531 2579999999999999999999999999999875 5789
Q ss_pred EEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHc--
Q 005759 160 IVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKY-- 237 (678)
Q Consensus 160 iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~-- 237 (678)
|+++.+++++..+ +..++++++++|++|.|+++.||++++++|| ++++||++++|||+||++||||++||.+++++
T Consensus 247 i~s~~~~~~~~~q-~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipi-l~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~ 324 (938)
T TIGR00395 247 ITSKEAFENLSYQ-KLKYKPIEEVPGKQFIGKKVHNPVVGPEVPI-LPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLH 324 (938)
T ss_pred EEeHHHHHhhhhc-ccceeEEEEEchHhccCCEEECCCCCCeeEE-eecceeecCCCcceEEeCCCCCHHHHHHHHHhhh
Confidence 9999999999876 4468899999999999999999999999999 88999999999999999999999999998863
Q ss_pred -----C-------CCccccc--CC-------------------------------------CCccccccCccCCceeccc
Q 005759 238 -----G-------LPILSPV--DD-------------------------------------EGKFTEEAGKFSGLDVLGD 266 (678)
Q Consensus 238 -----~-------l~~~~~v--d~-------------------------------------~G~~~~~~~~~~G~~v~~~ 266 (678)
| +++++++ ++ +|.++++++.|.|++|. +
T Consensus 325 ~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~-e 403 (938)
T TIGR00395 325 DPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVS-E 403 (938)
T ss_pred cchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHH-H
Confidence 2 3444433 32 35556666789999995 9
Q ss_pred chHHHHHHHHhcCceeeeeccccccccccCCCCCeEEc-ccCcccccch--HHHHHHHHHhhcCcccCCC----------
Q 005759 267 GNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFR-ATEQWFASVE--GFRQAAMDAIGQVKWVPPQ---------- 333 (678)
Q Consensus 267 ~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r-~t~QWFi~~~--~~~~~~~~~i~~v~~~P~~---------- 333 (678)
|++.|++.|++.|.+.....+.| +|+|||||+|++++ +++|||++++ ++++.+++++++++|+|+.
T Consensus 404 ar~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~ 482 (938)
T TIGR00395 404 AKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKID 482 (938)
T ss_pred hHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHh
Confidence 99999999999999988765434 68899999999998 9999999998 5888888877776666654
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 483 ~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~ 562 (938)
T TIGR00395 483 WLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQ 562 (938)
T ss_pred hhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCChhhcCCCHHHHH
Confidence
Q ss_pred -----------------------------------------------------------------------CCCCCCchh
Q 005759 334 -----------------------------------------------------------------------EAPGYGADV 342 (678)
Q Consensus 334 -----------------------------------------------------------------------~~~~yGaD~ 342 (678)
++++||||+
T Consensus 563 ~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDa 642 (938)
T TIGR00395 563 KLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADV 642 (938)
T ss_pred HHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHH
Confidence 335899999
Q ss_pred hhHHhhh-cCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Q 005759 343 LRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE 421 (678)
Q Consensus 343 lRl~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e 421 (678)
+|||+++ +++.+|++|+++.+....+++++++|+++++++... +.. ...+...|+|+++++++++++++++|+
T Consensus 643 lRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~---~~~---~~~~~~~D~wlls~l~~~i~~v~~a~e 716 (938)
T TIGR00395 643 ARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESN---LET---GEETSFIDRWLESRMNAAIKETYEAME 716 (938)
T ss_pred HHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcc---cCC---CccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986 588999999999999999999999999988765432 110 113467899999999999999999999
Q ss_pred hcccHHHH-HHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCcc
Q 005759 422 SYQFFKIF-QIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYT 500 (678)
Q Consensus 422 ~~~f~~a~-~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~ 500 (678)
+|+|++|+ ..+++|++. +|+|++..+++ ...+|.++++.+++||+|||||+|||||+.|+..
T Consensus 717 ~~~~~~Al~~~l~~~~~~--~n~Yl~~~~~~-------------~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~-- 779 (938)
T TIGR00395 717 NFQTRKAVKYALFDLQAD--VDWYRRRGGVN-------------HKDVLARYLETWIKLLAPFAPHFAEEMWEEVGNE-- 779 (938)
T ss_pred ccCHHHHHHHHHHHHHHH--HHHHHHhCcch-------------HHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC--
Confidence 99999999 668898864 89998764331 2247899999999999999999999999999743
Q ss_pred ccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceeEEEEEeCChhHHHHHHHh
Q 005759 501 LEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREM 580 (678)
Q Consensus 501 ~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~~~~~l~~~ 580 (678)
+||++++||++++.+.+ .++...++.++++- +.+|+...+....+.+++|+++++|..+.|..+
T Consensus 780 -------~sv~~~~wP~~~~~~~d--~~~~~~~~~~~~~i-------~~iR~~~~~~~~~p~~~~i~~~~~w~~~~~~~~ 843 (938)
T TIGR00395 780 -------GFVSLAKFPEASEPAVD--KEVEAAEEYLRNLV-------RDIQEIAKIDASKPKRVYLYTSEDWKSQCLKIV 843 (938)
T ss_pred -------CeEEecCCCCCCcccCC--HHHHHHHHHHHHHH-------HHHHHhhccCCCCCcEEEEEECcHHHHHHHHHH
Confidence 69999999998876655 55666666655443 444544556556677888999888888877776
Q ss_pred hc
Q 005759 581 CT 582 (678)
Q Consensus 581 ~~ 582 (678)
.+
T Consensus 844 ~~ 845 (938)
T TIGR00395 844 AE 845 (938)
T ss_pred HH
Confidence 43
No 21
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-81 Score=683.33 Aligned_cols=506 Identities=25% Similarity=0.411 Sum_probs=432.1
Q ss_pred hHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccce-E----E-
Q 005759 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRS-I----Y- 75 (678)
Q Consensus 2 ~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~-~----~- 75 (678)
+|++|||.|+||+|+++||||...+.|-+.|.+|+++|+|||+.+.|||||..+|++|+.||++.+ +.++. . |
T Consensus 169 ~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~e-i~~~t~l~vpGyd 247 (995)
T KOG0432|consen 169 NQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVE-IPGRTLLSVPGYD 247 (995)
T ss_pred HHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheeccee-cCCCceEecCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999866 43321 1 1
Q ss_pred ----------EEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCC-cEEEEEecccccCCCCCccCCC
Q 005759 76 ----------AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKL-QYAVVEIQSLLEGDSAAPANKK 144 (678)
Q Consensus 76 ----------v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~-~Y~~v~~~~~~~~~~~~~~~~~ 144 (678)
++|++.. ++..++|+||||+||+|++||||||++ +|.
T Consensus 248 ~~VeFG~L~~faY~v~g-------------s~~~i~VaTTRpET~lGDvAvAVhP~D~RYk------------------- 295 (995)
T KOG0432|consen 248 TKVEFGVLYSFAYPVEG-------------SDEEIVVATTRPETILGDVAVAVHPDDDRYK------------------- 295 (995)
T ss_pred cceeeeeeeEEEEeccC-------------CCCeEEEecCCccccccceeEEeCCCCcccc-------------------
Confidence 1233322 235899999999999999999999998 441
Q ss_pred CCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccC
Q 005759 145 SRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAP 224 (678)
Q Consensus 145 ~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aP 224 (678)
.|.|+.+.|||+++.+|| |.+.+|++++|||+|+++|
T Consensus 296 ------------------------------------------~lhGk~~~hP~~~r~lPi-I~D~~Vd~~fGTGaVKITP 332 (995)
T KOG0432|consen 296 ------------------------------------------HLHGKFVKHPFTGRKLPI-ICDIAVDMEFGTGAVKITP 332 (995)
T ss_pred ------------------------------------------cccCceeecCCCCCccce-eecccccccccccceEecC
Confidence 345889999999999999 7789999999999999999
Q ss_pred CCCHHHHHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEc
Q 005759 225 GHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFR 304 (678)
Q Consensus 225 ahg~~D~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r 304 (678)
||+++||+++++|||+++++++++|.+++.+|+|.||++| +||++|++.|++.|+....+......|.|.|||..|++.
T Consensus 333 aHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RF-eAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpl 411 (995)
T KOG0432|consen 333 AHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRF-EAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPL 411 (995)
T ss_pred CCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHH-HHHHHHHHHHHHhhhhhccCCCceeccccCCCCCccccc
Confidence 9999999999999999999999999999999999999998 899999999999999999999889999999999999999
Q ss_pred ccCcccccchHHHHHHHHHhh--cCcccCCC-------------------------------------------------
Q 005759 305 ATEQWFASVEGFRQAAMDAIG--QVKWVPPQ------------------------------------------------- 333 (678)
Q Consensus 305 ~t~QWFi~~~~~~~~~~~~i~--~v~~~P~~------------------------------------------------- 333 (678)
+.+|||++++.|.++++++++ .+.++|+.
T Consensus 412 lkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~Wvvars 491 (995)
T KOG0432|consen 412 LKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARS 491 (995)
T ss_pred ccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCC
Confidence 999999999999999999998 57777776
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 492 eeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~kL 571 (995)
T KOG0432|consen 492 EEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLKL 571 (995)
T ss_pred HHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHhhhhh
Confidence
Q ss_pred ------------------------------------------------------------------------CCCCCCch
Q 005759 334 ------------------------------------------------------------------------EAPGYGAD 341 (678)
Q Consensus 334 ------------------------------------------------------------------------~~~~yGaD 341 (678)
.+|++|+|
T Consensus 572 tG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtD 651 (995)
T KOG0432|consen 572 TGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTD 651 (995)
T ss_pred cCCCCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchH
Confidence 56799999
Q ss_pred hhhHHhhhc-CCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccC-CCCCC--ccCCCCCCHhHHHHHHHHHHHHHHHH
Q 005759 342 VLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD-WRVGN--SISYDDLPMIDQYALFQLENIVKNIR 417 (678)
Q Consensus 342 ~lRl~la~~-~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~-~~~~~--~~~~~~~~~~D~~il~~l~~~~~~v~ 417 (678)
+|||.+++. .-++|++++...+.+...|.|||||+.||.++.+.+ |.|.. .+..... ..|+||+++|+..++.+.
T Consensus 652 ALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~-~~d~WIlsrL~~av~~~~ 730 (995)
T KOG0432|consen 652 ALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNES-LVDEWILSRLAEAVEEVN 730 (995)
T ss_pred HHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcc-hhHHHHHHHHHHHHHHHH
Confidence 999999875 456899999999999999999999999999987654 66642 1112222 299999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 005759 418 ESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 497 (678)
Q Consensus 418 ~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~ 497 (678)
+.|+.|+|..|.+.+++|+..+||+.|++.+||-+|.+. ...+..+..+|+.+|...++||+|||||+|||+||+|+.
T Consensus 731 ~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~ 808 (995)
T KOG0432|consen 731 ESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDS--EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPR 808 (995)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc--HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhccc
Confidence 999999999999999999999999999999999988653 345567788999999999999999999999999999986
Q ss_pred CccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceeEEEEEeCChhHHHHH
Q 005759 498 AYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRL 577 (678)
Q Consensus 498 ~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~v~I~~~~~~~~~~l 577 (678)
. .+....|+..++||.....|.+ ++++..++.+.+ +.+.++.+|+...+..+.+..|.|..+++....++
T Consensus 809 r----~~~~~~si~va~yP~~~~~~~~--~e~E~~~~~v~~----i~~~iRslra~y~l~~~~~~~v~~~~s~~~~~~~~ 878 (995)
T KOG0432|consen 809 R----KGSKPASISVSPYPSSNELWRN--EELESAFELVLA----ITRAIRSLRAEYNLSPKPRGSVFIASSDEEDKSIL 878 (995)
T ss_pred C----CCCCCCceEecCCCchhcccCC--HHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCceEEEEecCCCcchhHH
Confidence 4 2223458999999977777777 667777776654 45566777877777654466677766544333455
Q ss_pred HHhhccCCChhhhhhheeeeceEEcc
Q 005759 578 REMCTAKHDADTLQRIFIISQVEVLP 603 (678)
Q Consensus 578 ~~~~~~~~~~~~L~~l~~vs~v~~~~ 603 (678)
+.+ .+.+..+..++.|.+..
T Consensus 879 ~~~------~~~i~~l~~~~~v~i~~ 898 (995)
T KOG0432|consen 879 KEF------LDEISTLTNLELVSISS 898 (995)
T ss_pred HHH------HHHHHHhhccceeEecc
Confidence 554 26788888888898876
No 22
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-81 Score=660.64 Aligned_cols=548 Identities=25% Similarity=0.455 Sum_probs=452.3
Q ss_pred hHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccc--cccCCCcccceEEEEEE
Q 005759 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAE--LEYPEGHVSRSIYAVFR 79 (678)
Q Consensus 2 ~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~E--vey~~~~~~~~~~v~f~ 79 (678)
+...|||-++|+++-|.||+|.|...++|+|.+|++||+||||.|...||..|.|+||+-| ..|+| ...++++|.|+
T Consensus 132 ~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKd-V~DPav~v~F~ 210 (1070)
T KOG0434|consen 132 KTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKD-VPDPAVFVAFP 210 (1070)
T ss_pred HHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchhcccCccc-CCCCeEEEEee
Confidence 4568999999999999999999999999999999999999999999999999999999655 57866 88999999999
Q ss_pred eeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEE
Q 005759 80 MVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFI 159 (678)
Q Consensus 80 l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (678)
+.+. +.+.++.|||||||||+|.|+||||++.|++++... .++.|
T Consensus 211 li~~------------~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~-----------------------~~k~y 255 (1070)
T KOG0434|consen 211 LIGD------------PNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKT-----------------------TGKKY 255 (1070)
T ss_pred ccCC------------cceeEEEEecCCccCccceeEEEcCCeEEEEEEecc-----------------------CCeEE
Confidence 9753 248899999999999999999999999999887542 37889
Q ss_pred EEeccchHHHHHHh-CCceEEEEeeecCcccCCEeeCCCC------CCcccEEEccCccccCCCCCceeccCCCCHHHHH
Q 005759 160 IVASDLVPTLEAKW-GTKLVIKKTLAGSDLENCRYVHPVD------NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYV 232 (678)
Q Consensus 160 iia~~~~~~l~~~~-~~~~~i~~~~~G~~l~g~~~~~P~~------~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~ 232 (678)
|+.++++..+-+.- ..+++|+..+.|++|.|++|..+|. .+...-++.++||+.+.|||+||+||++|.+||.
T Consensus 256 il~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~ 335 (1070)
T KOG0434|consen 256 ILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYR 335 (1070)
T ss_pred EEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHH
Confidence 99999988776542 2368999999999999999986653 2333444889999999999999999999999999
Q ss_pred HHHHcCC-----CcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccC
Q 005759 233 TSLKYGL-----PILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATE 307 (678)
Q Consensus 233 ~~~~~~l-----~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~ 307 (678)
+|..+|+ -+.|+||++|+|+.++.+|+|..| ++|.+.||+.|++.|.++....++|+||+||||.+|+|||+.|
T Consensus 336 ~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YV-KDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVP 414 (1070)
T KOG0434|consen 336 ACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYV-KDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVP 414 (1070)
T ss_pred HHHHcCcccCCCCCCCccccCCccccccccccceee-ccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhcc
Confidence 9999986 457999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHhhcCcccCCC------------------------------------------------------
Q 005759 308 QWFASVEGFRQAAMDAIGQVKWVPPQ------------------------------------------------------ 333 (678)
Q Consensus 308 QWFi~~~~~~~~~~~~i~~v~~~P~~------------------------------------------------------ 333 (678)
.||++++.+.++++......+|+|..
T Consensus 415 sWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~ 494 (1070)
T KOG0434|consen 415 SWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGV 494 (1070)
T ss_pred HhhhhHHHHHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcCC
Confidence 99999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 495 kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~V 574 (1070)
T KOG0434|consen 495 KITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLV 574 (1070)
T ss_pred cchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHhhhhccccccchhhHHHH
Confidence
Q ss_pred ----------------------------------------CCCCCCchhhhHHhhhcCCC--CceeeChhhhhHH-HHHH
Q 005759 334 ----------------------------------------EAPGYGADVLRLWVSSVDYT--GDVMIGPQVLRQM-SDIY 370 (678)
Q Consensus 334 ----------------------------------------~~~~yGaD~lRl~la~~~~~--~D~~~s~~~l~~~-~~~~ 370 (678)
++.+||||+||+|+.+++.- ....|.++.++.+ .+.+
T Consensus 575 lsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~ 654 (1070)
T KOG0434|consen 575 LSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVL 654 (1070)
T ss_pred HHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHHhhh
Confidence 45699999999999987763 5889999887764 5566
Q ss_pred HHHHHHHHHHHhcccC--------CCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhh
Q 005759 371 RKLRGTLRYLLGNLHD--------WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSN 442 (678)
Q Consensus 371 ~ki~n~~rf~l~nl~~--------~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n 442 (678)
.-++|..||+..|..- |.+...++ ..+.+|+||++..++++.-+++.|++|++..++-.+..|+. +|.|
T Consensus 655 lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~--S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD-~LTN 731 (1070)
T KOG0434|consen 655 LPWYNSYRFLVQNAALLKKETGKDFVFDDSVT--SSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFID-ELTN 731 (1070)
T ss_pred hhhhHHHHHHHHHHHHhccccCCccccccccc--cchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHH-Hhhh
Confidence 7889999999988643 22222221 34579999999999999999999999999999999999996 6999
Q ss_pred hHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCc-cccCCCCCcceeeccCCCCccc
Q 005759 443 FYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEK 521 (678)
Q Consensus 443 ~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~-~~~~~~~~~sV~~~~wP~~~~~ 521 (678)
||+...+-||-.+. ...+.-.++.+|..+|.+++++|+||+||++|-+||+|.... ..+++....|||...+|.+.+.
T Consensus 732 wYiR~nRrrlkGe~-G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~ 810 (1070)
T KOG0434|consen 732 WYIRFNRRRLKGEN-GEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEE 810 (1070)
T ss_pred hheehhhhhhcCCC-chHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhh
Confidence 99999999886443 233455788899999999999999999999999999986421 1112333579999999998887
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCCceeEEEEEeCChhHHHHHHHhhccCCChhhhhhheeeece
Q 005759 522 WRTFPVGEIYFWGKILELRTEVNKVLEVARTGKL--IGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQV 599 (678)
Q Consensus 522 ~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~--i~~~~~~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v 599 (678)
..+ +..+...+..+++.+. .+.+|..+. ++.++..-|+|.. +++..+.++.+. +.+.+-|+|-+|
T Consensus 811 ~~d--e~ve~~v~~m~siIdl----~R~iRern~islKtPLK~~ivi~~-d~~~ledik~l~------~yI~eElNVr~v 877 (1070)
T KOG0434|consen 811 LID--ETVERRVERMQSIIDL----ARNIRERNTISLKTPLKELIVIHS-DEEYLEDIKSLE------RYILEELNVREV 877 (1070)
T ss_pred hcc--chHHHHHHHHHHHHHH----HHHHhhccCCcccCchhheEEEcC-CHHHHHHHHHHH------HHHHHhhcceee
Confidence 766 4444444444333332 233454444 4555555555544 566666666663 456666788888
Q ss_pred EEcc
Q 005759 600 EVLP 603 (678)
Q Consensus 600 ~~~~ 603 (678)
.+.+
T Consensus 878 ~~~~ 881 (1070)
T KOG0434|consen 878 VFTS 881 (1070)
T ss_pred eecc
Confidence 7765
No 23
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.2e-72 Score=656.81 Aligned_cols=451 Identities=23% Similarity=0.363 Sum_probs=348.8
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccce--EEE--
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRS--IYA-- 76 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~--~~v-- 76 (678)
++||++||+++||+++|+||||+|++++||+|.+|+++|+|||+.+||+|||.|+|+||++||+. +++.+| .++
T Consensus 108 ~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~--~~~~~~~~~~~~~ 185 (805)
T PRK00390 108 KKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVID--GRCWRCGAPVEKK 185 (805)
T ss_pred HHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhC--CeecccCCeeEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999983 444333 332
Q ss_pred -----EEEeeeCCCCCccccccc--------------------------C--CCceeEEeecCcceeccccEEEECCCCc
Q 005759 77 -----VFRMVSAPPSTSGLLNEF--------------------------L--PDLGLAVWTTTPWTVPANAAVAVNAKLQ 123 (678)
Q Consensus 77 -----~f~l~~~~~~~~~~l~~~--------------------------~--~~~~~~iwTT~P~Tl~~n~ai~v~p~~~ 123 (678)
+|+++++++.|.+.|+.. . .+.+++||||||||||||+||||||+++
T Consensus 186 ~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~ 265 (805)
T PRK00390 186 ELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHP 265 (805)
T ss_pred ecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCCh
Confidence 467777665554432211 1 1357999999999999999999999999
Q ss_pred EEEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHhCC-ceEEEEeeecCcccCCEeeCCCCCCcc
Q 005759 124 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGT-KLVIKKTLAGSDLENCRYVHPVDNRQC 202 (678)
Q Consensus 124 Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~-~~~i~~~~~G~~l~g~~~~~P~~~~~~ 202 (678)
|+.+..+ .+ .. .+++++.+....+. ...++++++|. |.|++|.||++++++
T Consensus 266 ~~~~~~~-------------------------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-l~g~~~~~P~~~~~i 317 (805)
T PRK00390 266 LVEKLAE-------------------------QN-PA-VAAFIEECKKKSDLERQTETKEKTGV-FTGLYAIHPLTGEKI 317 (805)
T ss_pred hHHhhhc-------------------------ch-HH-HHHHHHHHhhhcchhhhhcccceeee-ecCcEEECCCCCCee
Confidence 8854321 00 00 12222222222111 13445678996 999999999999999
Q ss_pred cEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCCcccccCCCCc--------ccccc-----CccCCceecccchH
Q 005759 203 PVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGK--------FTEEA-----GKFSGLDVLGDGNV 269 (678)
Q Consensus 203 pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~vd~~G~--------~~~~~-----~~~~G~~v~~~~~~ 269 (678)
|| +.++||++++|||+||+|||||++||++|++|||+++++||.+|. |++++ +.|.|+.+. +|++
T Consensus 318 pi-~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~-~a~~ 395 (805)
T PRK00390 318 PV-WIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSE-EAKE 395 (805)
T ss_pred eE-EEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHH-HHHH
Confidence 99 669999999999999999999999999999999999999986552 34332 789999995 9999
Q ss_pred HHHHHHHhcCceeeeecc--------ccccccccCCCCCeEEcc--------cCcc------------------------
Q 005759 270 AVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKKPTIFRA--------TEQW------------------------ 309 (678)
Q Consensus 270 ~ii~~L~~~g~l~~~~~~--------~h~yp~~wr~~~pvi~r~--------t~QW------------------------ 309 (678)
+|++.|++.|.+.....| +|+| |+++.|++++. .+||
T Consensus 396 ~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~---WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 472 (805)
T PRK00390 396 AIIAWLEEKGLGKRKVNYRLRDWGISRQRY---WGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWV 472 (805)
T ss_pred HHHHHHHHcCCCCCceEEECCCcccccccc---CCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhh
Confidence 999999999987644333 6788 88888877752 1222
Q ss_pred ---------------------cccchHHHHHHHHH------hh---cCcccCCC--------------------------
Q 005759 310 ---------------------FASVEGFRQAAMDA------IG---QVKWVPPQ-------------------------- 333 (678)
Q Consensus 310 ---------------------Fi~~~~~~~~~~~~------i~---~v~~~P~~-------------------------- 333 (678)
|-+.-.+.. .... .+ --+|+|.+
T Consensus 473 ~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~-~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~ 551 (805)
T PRK00390 473 NVTCPKCGKPARRETDTMDTFVGSSWYYLR-YTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDL 551 (805)
T ss_pred CCCccccCCCceeCCcccccccccccHHHH-hcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHh
Confidence 222100000 0000 00 01234443
Q ss_pred --------------------------------CCCCCCchhhhHHhhh-cCCCCceeeChhhhhHHHHHHHHHHHHHHHH
Q 005759 334 --------------------------------EAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYL 380 (678)
Q Consensus 334 --------------------------------~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~ 380 (678)
++++||||++|||+++ +++.+|++|+++.++++.++++++||++++.
T Consensus 552 ~~~~~~~Pfk~v~~~G~vKMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~ 631 (805)
T PRK00390 552 GLVSSDEPFKKLLTQGMVKMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDA 631 (805)
T ss_pred hcccCCcchhhheecCcEEeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 3348999999999986 6899999999999999999999999999997
Q ss_pred HhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChH
Q 005759 381 LGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSF 460 (678)
Q Consensus 381 l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~ 460 (678)
+++..+++. +...+|+|+++++++++++++++|++|+|++|++.+++|++ ++++.| +
T Consensus 632 ~~~~~~~~~-------~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n-~lsk~~-~-------------- 688 (805)
T PRK00390 632 KGEAGALDV-------AALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVN-ALYKAE-D-------------- 688 (805)
T ss_pred hhcccccCc-------ccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHH-H--------------
Confidence 766544321 23468999999999999999999999999999999999996 476654 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccc
Q 005759 461 TRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 521 (678)
Q Consensus 461 ~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~ 521 (678)
++++.+++++++.+++|||||+||+|||||+.|+.. +||+.++||.+++.
T Consensus 689 --~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~---------~sv~~~~wP~~~~~ 738 (805)
T PRK00390 689 --EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHE---------GSIANAPWPTADEA 738 (805)
T ss_pred --HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC---------CeeEecCCCCCCHH
Confidence 245678999999999999999999999999999642 68999999987643
No 24
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=8.6e-74 Score=652.23 Aligned_cols=287 Identities=42% Similarity=0.781 Sum_probs=263.3
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||+|||+++||+|+|.||||.|+++++|+|.+|+++||||||.+||+|||+|+|+|||+||+|++ +.++++|++|++
T Consensus 116 ~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev~~~~-~~~~~~~v~f~~ 194 (601)
T PF00133_consen 116 KEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEVEYKE-VKSPSIYVKFPL 194 (601)
T ss_dssp HHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGEEEEE-EEEEEEEEEEEE
T ss_pred hhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhccccc-ccCceEEEEEEe
Confidence 4799999999999999999999999999999999999999999999999999999999999999965 889999999999
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+. ++.+++||||||||||||+||+|||+..|+ . +++.+|
T Consensus 195 ~~~------------~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~-------------------------~~~~~i 234 (601)
T PF00133_consen 195 KDG------------EEVYLVIWTTRPETLPGNTAIAVNPDFDYV---I-------------------------NGERYI 234 (601)
T ss_dssp SSS------------SEEEEEEEES-GGGGGG-BEEEE-TTSEEE---E-------------------------TTEEEE
T ss_pred cCc------------cceEEEEEechhhHHhCCeeEEECCCccce---e-------------------------CCeeeh
Confidence 653 126899999999999999999999999999 2 268999
Q ss_pred EeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCC
Q 005759 161 VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 240 (678)
Q Consensus 161 ia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~ 240 (678)
+++++++++..+.+.. +++++|++|.|++|.||++++++|| |+++||+++.|||+||+|||||++||.++++++++
T Consensus 235 ~~~~~~~~~~~~~~~~---~~~~~g~~L~g~~~~~P~~~~~~~v-i~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~ 310 (601)
T PF00133_consen 235 VAKDLVEKLSKQEKTK---LEDFRGKELVGLKYIHPLTGREVPV-IPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLP 310 (601)
T ss_dssp EEHHHHHHHHTTTSSS---EEEEECHHHTTSEEE-TTSSSSEEE-EEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhhc---ccccCcceecCcEeccccccceeEE-EcccccccccchhhhhhcccCCHHHHHHHhhcCce
Confidence 9999999999876544 8899999999999999999999999 88999999999999999999999999999999999
Q ss_pred cccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHHHH
Q 005759 241 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAA 320 (678)
Q Consensus 241 ~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~ 320 (678)
++++||++|+++++++.|.|++|+ +|++.|++.|+++|.++..+.+.|+||||||||+||++++++|||++++++++++
T Consensus 311 ~~~~id~~G~~~~~~~~~~G~~v~-~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~ 389 (601)
T PF00133_consen 311 IINPIDEDGRFTEEAGKFKGMKVF-EAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKA 389 (601)
T ss_dssp CGCCCCCTSTBBSCCSTTTTSBHH-HHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHH
T ss_pred eeEecCCCceEeecccccCCceee-eccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHH
Confidence 999999999999999999999996 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCC
Q 005759 321 MDAIGQVKWVPPQ 333 (678)
Q Consensus 321 ~~~i~~v~~~P~~ 333 (678)
++++++++|+|+.
T Consensus 390 l~~~~~i~~~P~~ 402 (601)
T PF00133_consen 390 LEALEKIKFYPES 402 (601)
T ss_dssp HHHHHTSEESSST
T ss_pred HhhcccceEEccc
Confidence 9999999999998
No 25
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=2.9e-72 Score=656.69 Aligned_cols=445 Identities=22% Similarity=0.364 Sum_probs=348.7
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccce---EE--
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRS---IY-- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~---~~-- 75 (678)
++||++||+++||+|+|+|+||+|++++||+|.+|+++|+|||+.+||+|||.|+|+||++||++ +|++.+| +.
T Consensus 105 ~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~-~g~~~~~g~~v~~~ 183 (842)
T TIGR00396 105 KKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDS-DGRSWRGGTPVEKK 183 (842)
T ss_pred HHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhh-cCccccCCCcceEe
Confidence 47999999999999999999999999999999999999999999999999999999999999965 3555443 22
Q ss_pred ----EEEEeeeCCCCCccccccc--------------------------CC--CceeEEeecCcceeccccEEEECCCCc
Q 005759 76 ----AVFRMVSAPPSTSGLLNEF--------------------------LP--DLGLAVWTTTPWTVPANAAVAVNAKLQ 123 (678)
Q Consensus 76 ----v~f~l~~~~~~~~~~l~~~--------------------------~~--~~~~~iwTT~P~Tl~~n~ai~v~p~~~ 123 (678)
.+|+|+++++.+++.|+.. .. +.+++||||||||||||+||+|||+++
T Consensus 184 ~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~ 263 (842)
T TIGR00396 184 ELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHP 263 (842)
T ss_pred ecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCH
Confidence 2578888776554432211 11 347999999999999999999999999
Q ss_pred EEEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHh----CCceEEEEeeecCcccCCEeeCCCCC
Q 005759 124 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKW----GTKLVIKKTLAGSDLENCRYVHPVDN 199 (678)
Q Consensus 124 Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~----~~~~~i~~~~~G~~l~g~~~~~P~~~ 199 (678)
|+.+... .++.++.+.+.. +.+..++...+|..|.|++|.||+++
T Consensus 264 ~~~~~~~-------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~ 312 (842)
T TIGR00396 264 LVEKIAE-------------------------------NNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTG 312 (842)
T ss_pred HHHhhhc-------------------------------chHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCC
Confidence 8744211 011233333222 11223444567778999999999999
Q ss_pred CcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCCcccccCC------------CCccccccCccCCceecccc
Q 005759 200 RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDD------------EGKFTEEAGKFSGLDVLGDG 267 (678)
Q Consensus 200 ~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~vd~------------~G~~~~~~~~~~G~~v~~~~ 267 (678)
+++|| +.++||++++|||+||+|||||++||++|++|||+++++|++ +|++++ .+.|.|+.+. +|
T Consensus 313 ~~ipi-~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~Gl~~~-~A 389 (842)
T TIGR00396 313 EKIPI-WVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFNGLNSS-EA 389 (842)
T ss_pred CEeEE-EEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-chhcCCCCHH-HH
Confidence 99999 569999999999999999999999999999999999999983 677764 4789999994 99
Q ss_pred hHHHHHHHHhcCceeeeecc--------ccccccccCCCCCeEEccc---------------------------------
Q 005759 268 NVAVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKKPTIFRAT--------------------------------- 306 (678)
Q Consensus 268 ~~~ii~~L~~~g~l~~~~~~--------~h~yp~~wr~~~pvi~r~t--------------------------------- 306 (678)
++.|++.|+++|.+.+...| +|+| |+++.|++++..
T Consensus 390 ~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRy---WG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~ 466 (842)
T TIGR00396 390 REAIIAMLEKEGKGKRKVNYRLRDWLFSRQRY---WGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQ 466 (842)
T ss_pred HHHHHHHHHHcCCCCceEEeecccceeecccc---cCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhh
Confidence 99999999999988765555 5888 888888877421
Q ss_pred ---------------------CcccccchH-H-------------HHHHHHHhhcCcccCCC------------------
Q 005759 307 ---------------------EQWFASVEG-F-------------RQAAMDAIGQVKWVPPQ------------------ 333 (678)
Q Consensus 307 ---------------------~QWFi~~~~-~-------------~~~~~~~i~~v~~~P~~------------------ 333 (678)
++||-+... + ++.+ -+|+|.+
T Consensus 467 ~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~------~~~~PvD~yi~G~dhailHLlyaRf 540 (842)
T TIGR00396 467 EWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKA------EYWLPVDLYIGGAEHAILHLLYARF 540 (842)
T ss_pred hhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHH------hccCCCcEeeccHHHHHHHHHHHHH
Confidence 123321100 0 0000 1133332
Q ss_pred -----------------------------------------------------------------------------CCC
Q 005759 334 -----------------------------------------------------------------------------EAP 336 (678)
Q Consensus 334 -----------------------------------------------------------------------------~~~ 336 (678)
+++
T Consensus 541 ~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~ 620 (842)
T TIGR00396 541 WHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK 620 (842)
T ss_pred HHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH
Confidence 223
Q ss_pred CCCchhhhHHhhh-cCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHH
Q 005759 337 GYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKN 415 (678)
Q Consensus 337 ~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~ 415 (678)
+||||++|||+++ +++.+|++|+++.++++.++++||||+++++++++.++. .++...+...|+|+++++++++++
T Consensus 621 ~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~---~~~~~~l~~~d~~il~~l~~~i~~ 697 (842)
T TIGR00396 621 KHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKT---YLTPTILEEAQKELRRDVHKFLKK 697 (842)
T ss_pred HcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcccc---cCCcccCCHHHHHHHHHHHHHHHH
Confidence 7999999999985 678999999999999999999999999999988876532 111234567999999999999999
Q ss_pred HHHHHHhcc-cHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHh
Q 005759 416 IRESYESYQ-FFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQN 494 (678)
Q Consensus 416 v~~~~e~~~-f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~ 494 (678)
|+++|++|+ |++|++.+|+|++ ++++ |. + ..+++.++..+++|||||+||+|||||+.
T Consensus 698 v~~~~e~y~~fn~ai~~l~~f~n-~L~~-~~---~----------------~~~l~~~l~~ll~lLaPf~PhiaEElW~~ 756 (842)
T TIGR00396 698 VTEDLEKLESFNTAISAMMILLN-ALYK-AK---K----------------DALYLEYLKGFLTVLSPFAPHLAEELWEK 756 (842)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH-HHHh-hh---h----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999 9999999999996 4654 21 0 02689999999999999999999999999
Q ss_pred CCCCccccCCCCCcceeeccCCCCccc
Q 005759 495 LPFAYTLEDGSAAEFVFESKWPVLDEK 521 (678)
Q Consensus 495 l~~~~~~~~~~~~~sV~~~~wP~~~~~ 521 (678)
|+.. ..||+.++||++++.
T Consensus 757 l~~~--------~~sv~~~~wP~~d~~ 775 (842)
T TIGR00396 757 LGSE--------PFIIKQAKWPKVDET 775 (842)
T ss_pred hCCC--------CCeeecCCCCCCCHH
Confidence 9742 248999999987653
No 26
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.9e-69 Score=633.25 Aligned_cols=455 Identities=21% Similarity=0.314 Sum_probs=334.1
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceE--E---
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSI--Y--- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~--~--- 75 (678)
|+||++||+++||+|+|+||||+|++++||+|.+|+++|||||+.+||+|||.|+|+||++||+++ .+.++. +
T Consensus 187 ~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~--~~~~~~~~~~~~ 264 (963)
T PLN02563 187 RSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG--LSERGGHPVIRK 264 (963)
T ss_pred HHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcC--CCcCCCCceEEE
Confidence 579999999999999999999999999999999999999999999999999999999999999863 333332 2
Q ss_pred ----EEEEeeeCCCCCccccccc--------------------------CC------CceeEEeecCcceeccccEEEEC
Q 005759 76 ----AVFRMVSAPPSTSGLLNEF--------------------------LP------DLGLAVWTTTPWTVPANAAVAVN 119 (678)
Q Consensus 76 ----v~f~l~~~~~~~~~~l~~~--------------------------~~------~~~~~iwTT~P~Tl~~n~ai~v~ 119 (678)
.+|+|++++++|++.|+.+ .+ +.+++||||||||||||+||+||
T Consensus 265 ~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~ 344 (963)
T PLN02563 265 PMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVA 344 (963)
T ss_pred ecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEEC
Confidence 2578888887776654211 11 35799999999999999999999
Q ss_pred CCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCC
Q 005759 120 AKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDN 199 (678)
Q Consensus 120 p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~ 199 (678)
|++.|+.+.... +.+..+ +.|+.+..+.+.+... .....+|..|.|+++.||+++
T Consensus 345 p~~~yv~~~~~~----------~~~~~v---------~~y~~~~~~~~~~~~~------~~~~~k~g~~~g~~~~~P~~~ 399 (963)
T PLN02563 345 PEHPLLSSLTTA----------EQKEAV---------EEYVDAASRKSDLERT------ELQKEKTGVFTGSYAINPATG 399 (963)
T ss_pred CCChhhHhhhcc----------cchHHH---------HHHHHHHhchhHHhhh------hccceecccccCcEEeccCCC
Confidence 999998432210 000000 1111111112222111 112345667899999999999
Q ss_pred CcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCCcccccCC---C-----Ccccccc-----Cc----cCCce
Q 005759 200 RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDD---E-----GKFTEEA-----GK----FSGLD 262 (678)
Q Consensus 200 ~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~vd~---~-----G~~~~~~-----~~----~~G~~ 262 (678)
+++||| .++||++++|||+||+|||||++||++|++||||++++|+. + |.|++++ +. |.|+.
T Consensus 400 ~~iPI~-~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~ 478 (963)
T PLN02563 400 EAIPIW-VADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLS 478 (963)
T ss_pred CeeEEE-EecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCCCcccccCCcC
Confidence 999995 59999999999999999999999999999999999999942 1 5555432 33 99999
Q ss_pred ecccchHHHHHHHHhcCceeeeecc--------ccccccccCCCCCeEEccc----------------------------
Q 005759 263 VLGDGNVAVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKKPTIFRAT---------------------------- 306 (678)
Q Consensus 263 v~~~~~~~ii~~L~~~g~l~~~~~~--------~h~yp~~wr~~~pvi~r~t---------------------------- 306 (678)
+ ++|++.|++.|+++|.+.....| +|+| |+++.|++++..
T Consensus 479 ~-~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRy---WG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g 554 (963)
T PLN02563 479 S-KEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRY---WGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTG 554 (963)
T ss_pred H-HHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecc---cCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCC
Confidence 9 59999999999999998766555 6888 888888877531
Q ss_pred -----------------------------CcccccchH-HH-------HHHHHHhhcCcccCCC----------------
Q 005759 307 -----------------------------EQWFASVEG-FR-------QAAMDAIGQVKWVPPQ---------------- 333 (678)
Q Consensus 307 -----------------------------~QWFi~~~~-~~-------~~~~~~i~~v~~~P~~---------------- 333 (678)
++||-+.-- ++ +...+.-..-.|+|.+
T Consensus 555 ~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~ 634 (963)
T PLN02563 555 EPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYA 634 (963)
T ss_pred CCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHH
Confidence 011110000 00 0000000001344544
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 635 Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (963)
T PLN02563 635 RFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPS 714 (963)
T ss_pred HHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccccCCc
Confidence
Q ss_pred ----------------------CCCCCCchhhhHHhhh-cCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 005759 334 ----------------------EAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG 390 (678)
Q Consensus 334 ----------------------~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~ 390 (678)
++++||||+||||+++ +++.+|..|+.+.+.++.++++++||++.....+-..+.+.
T Consensus 715 ~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~ 794 (963)
T PLN02563 715 IRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDG 794 (963)
T ss_pred ccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCcc
Confidence 1138999999999986 45677889999999988888888888876532111112211
Q ss_pred CccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHH
Q 005759 391 NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLS 470 (678)
Q Consensus 391 ~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~ 470 (678)
..+ .....|+|+++++++++++|+++|++|+|++|++.+|+|++. +++ |. .++.
T Consensus 795 -~~~--~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~-l~~----------~~------------~~~~ 848 (963)
T PLN02563 795 -TVV--TDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNA-AYK----------WD------------KVPR 848 (963)
T ss_pred -ccc--cCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhC----------ch------------HHHH
Confidence 111 112469999999999999999999999999999999999964 432 21 0346
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCcccc
Q 005759 471 AHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 522 (678)
Q Consensus 471 ~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~ 522 (678)
++++.+++|||||+||+|||||+.|+.. +||+.++||++++.+
T Consensus 849 ~~l~~ll~LLaPf~PhiaEELW~~Lg~~---------~sv~~~~WP~~d~~~ 891 (963)
T PLN02563 849 EAIEPFVLLLSPYAPHLAEELWFRLGHS---------NSLAYEPWPEANPSY 891 (963)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHcCCC---------CeeeeCCCCCCCHHH
Confidence 7899999999999999999999999743 699999999877543
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-57 Score=512.65 Aligned_cols=457 Identities=24% Similarity=0.372 Sum_probs=330.6
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEE-----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY----- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~----- 75 (678)
|+||++||+|+||+|++.|+||+|++|+||+|.+|+++|||||+.++|+|||.|+|+||++||. +|.+++|..
T Consensus 110 k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~--~g~~~r~~~~V~~k 187 (814)
T COG0495 110 KKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVI--DGGCWRCGEPVEIK 187 (814)
T ss_pred HHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceee--cCCcccCCCceeEe
Confidence 5899999999999999999999999999999999999999999999999999999999999998 556667643
Q ss_pred ----EEEEeeeCCCCCccccccc---------------------------CCC----ceeEEeecCcceeccccEEEECC
Q 005759 76 ----AVFRMVSAPPSTSGLLNEF---------------------------LPD----LGLAVWTTTPWTVPANAAVAVNA 120 (678)
Q Consensus 76 ----v~f~l~~~~~~~~~~l~~~---------------------------~~~----~~~~iwTT~P~Tl~~n~ai~v~p 120 (678)
.+|++++|++.|++.|..+ ..+ ..+.|+||||.|++|.+.+++.|
T Consensus 188 el~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~ 267 (814)
T COG0495 188 ELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAP 267 (814)
T ss_pred eeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeC
Confidence 4799999998776554322 011 35788888888888888888888
Q ss_pred CCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCC
Q 005759 121 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNR 200 (678)
Q Consensus 121 ~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~ 200 (678)
++..+...+. +.+...+++|+....+...+.+. .-....+|..+ |..+.||+++.
T Consensus 268 ~h~lv~~~~~----------~~~~~~~a~fv~~~~~~~~~~~~--------------~~~~~k~gv~~-g~~a~~p~~~e 322 (814)
T COG0495 268 EHPLVGKLVT----------NPQTPLVAEFVDECKGTGVVESV--------------PAHAEKDGVFL-GGYAINPVNGE 322 (814)
T ss_pred CchHHHHHhc----------CccchhHHHHHHHhcCCCceeee--------------eccCCCcceec-cccccCCCCCC
Confidence 8864311110 00012222233221111111000 00123455544 67889999999
Q ss_pred cccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCCcccccCC-----------CCccccccCccCCceecccchH
Q 005759 201 QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDD-----------EGKFTEEAGKFSGLDVLGDGNV 269 (678)
Q Consensus 201 ~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~vd~-----------~G~~~~~~~~~~G~~v~~~~~~ 269 (678)
.+|||+ ++||.+.+|||+||.+|+|+.+||++|.+|++|+..+|.. +|.+. +.+.|.|+.. +++..
T Consensus 323 ~iPi~~-a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~li-nS~~~~gl~~-e~a~~ 399 (814)
T COG0495 323 KIPVWI-ANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLI-NSGGLDGLDY-EEAKV 399 (814)
T ss_pred cCCEEE-eCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEe-ccccccCcch-hHHHH
Confidence 999976 9999999999999999999999999999999999887743 23432 2357899988 46667
Q ss_pred HHHHHHHhcCceeeeecc--------ccccccccCCCCCeEEccc-------------------------------Cccc
Q 005759 270 AVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKKPTIFRAT-------------------------------EQWF 310 (678)
Q Consensus 270 ~ii~~L~~~g~l~~~~~~--------~h~yp~~wr~~~pvi~r~t-------------------------------~QWF 310 (678)
.+...|.+.|.....-.| +++| |.++.|+|+..+ +.|-
T Consensus 400 ~~~~~l~~~~~~q~~v~Y~lrdW~~srqRy---wg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~ 476 (814)
T COG0495 400 KIRCGLVKRGLGQWFVNYRLRDWLKSRQRY---WGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWV 476 (814)
T ss_pred HHHHhHHHhcCCceEEecccchHHHHHHHH---hCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceE
Confidence 777888877766555555 4677 889999887441 1222
Q ss_pred --------------------ccch--------HHH-HHHHHHhhcCcccCCC----------------------------
Q 005759 311 --------------------ASVE--------GFR-QAAMDAIGQVKWVPPQ---------------------------- 333 (678)
Q Consensus 311 --------------------i~~~--------~~~-~~~~~~i~~v~~~P~~---------------------------- 333 (678)
-+.. .+. +...+--+-.+|+|.+
T Consensus 477 ~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~ 556 (814)
T COG0495 477 IESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGL 556 (814)
T ss_pred EEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCc
Confidence 1110 000 0000000113678876
Q ss_pred ------------------------------------CCCCCCchhhhHHhhh-cCCCCceeeChhhhhHHHHHHHHHHHH
Q 005759 334 ------------------------------------EAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGT 376 (678)
Q Consensus 334 ------------------------------------~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~ 376 (678)
++++||||++|+|+++ +++.+|.+|+++.+.++..+++++|++
T Consensus 557 ~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l 636 (814)
T COG0495 557 VPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNL 636 (814)
T ss_pred CCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHH
Confidence 2359999999999986 677899999999999999999999998
Q ss_pred HHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhhhhhHHHhhhccccCC
Q 005759 377 LRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYES-YQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTG 455 (678)
Q Consensus 377 ~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~-~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~ 455 (678)
+.-..+.... .. ..+....|+|+++++ ++.|++.++. +.|+.|+..+|+|++. ..+|....+.
T Consensus 637 ~~~~~~~~~~-----~~-~~~~~~~~~~~~h~~---~~~v~~~~e~~~~~nt~i~~~m~l~N~--l~~~~~~~~~----- 700 (814)
T COG0495 637 VKEHLEKLVE-----EL-TKEQGKEDRWLLHRT---IKKVTEDFEARQTFNTAIAALMELLNA--LRKYLRRTEG----- 700 (814)
T ss_pred HHHhhhcccc-----cc-cchhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcccc-----
Confidence 8766543211 00 011115677776654 5666777776 9999999999999964 5677665433
Q ss_pred CCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCC
Q 005759 456 GTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRT 524 (678)
Q Consensus 456 ~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~ 524 (678)
. . .+|..+++.+++||+||+||+|||+|+.++.. ++|+.++||++++....
T Consensus 701 -----~-~---~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~---------~~v~~~~wP~~de~~l~ 751 (814)
T COG0495 701 -----D-R---KVLREALETWVRLLAPFAPHIAEELWEELGNE---------GFVSNAPWPEPDEEALV 751 (814)
T ss_pred -----h-H---HHHHHHHHHHHHHhcccccHHHHHHHHHhcCC---------CceeeCCCCCCChhhcc
Confidence 0 1 47889999999999999999999999999853 48999999999876544
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-53 Score=451.07 Aligned_cols=450 Identities=21% Similarity=0.344 Sum_probs=330.2
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEE----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYA---- 76 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v---- 76 (678)
|+|+++||+++||+|++.|++|+|++|.||+|.+||++||.||...+|||||.++|+||++||+- +|+.++|...
T Consensus 133 k~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~-~G~SWRSGA~VEkK 211 (876)
T KOG0435|consen 133 KQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDA-DGCSWRSGAKVEKK 211 (876)
T ss_pred HHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcc-cCccccccchhhHH
Confidence 68999999999999999999999999999999999999999999999999999999999999975 7888998753
Q ss_pred -----EEEeeeCCCCCccccccc------------------------------CCCceeEEeecCcceeccccEEEECCC
Q 005759 77 -----VFRMVSAPPSTSGLLNEF------------------------------LPDLGLAVWTTTPWTVPANAAVAVNAK 121 (678)
Q Consensus 77 -----~f~l~~~~~~~~~~l~~~------------------------------~~~~~~~iwTT~P~Tl~~n~ai~v~p~ 121 (678)
+.++++|++.|++.|+.+ ..+..|.+|||||+||+|.+++++.|+
T Consensus 212 ~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~ 291 (876)
T KOG0435|consen 212 KLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPS 291 (876)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCC
Confidence 367788888887776643 013679999999999999999999999
Q ss_pred CcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCc
Q 005759 122 LQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQ 201 (678)
Q Consensus 122 ~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~ 201 (678)
+..+.... ++.+.+... .+. . +|-. .+..+.||++++.
T Consensus 292 H~L~~~~~----------------------------------~lkefl~~~---~l~--~--Kg~~-lp~~A~Np~tg~~ 329 (876)
T KOG0435|consen 292 HSLLDKDS----------------------------------SLKEFLSKS---DLP--Q--KGVQ-LPCQAKNPVTGRA 329 (876)
T ss_pred chhhhhhc----------------------------------hHHHhhhhh---hcc--c--cCcc-cceeeccCCCCce
Confidence 97441110 112222210 010 1 3443 3689999999999
Q ss_pred ccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCCcccc----cCCCCccccccCccCCceecccchHHHHHHHHh
Q 005759 202 CPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSP----VDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDE 277 (678)
Q Consensus 202 ~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~----vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~ 277 (678)
+|||+ ++||...+|||+||.+|+|+.+|++++++.|+..+.. .++.|+-+.. ..+.|+.+.++|...|+++++.
T Consensus 330 iPv~~-a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~-~~~tn~~~~q~a~~~l~~~~~~ 407 (876)
T KOG0435|consen 330 IPVVV-ADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQ-KAFTNLDIRQNAALKLFQFAER 407 (876)
T ss_pred eeEEE-echhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhcc-ccccchhHHHHHHHHHHHHHHh
Confidence 99965 8999999999999999999999999999966544332 3455554432 4567766545788899999999
Q ss_pred cCceeeeecc--------ccccccccCCCCCeEEccc-------------------------------Cc----------
Q 005759 278 QMSLIMEEPY--------EHKYPYDWRTKKPTIFRAT-------------------------------EQ---------- 308 (678)
Q Consensus 278 ~g~l~~~~~~--------~h~yp~~wr~~~pvi~r~t-------------------------------~Q---------- 308 (678)
.|.......| +|+| |+|+.|++.+.+ +.
T Consensus 408 ~g~g~~~vs~kLkDWLiSRQRy---WGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg 484 (876)
T KOG0435|consen 408 KGVGGYVVSYKLKDWLISRQRY---WGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCG 484 (876)
T ss_pred cCCCcceecchhhhhhhhhhhc---cCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCC
Confidence 8887766655 5889 999999988531 12
Q ss_pred -----------------cc-ccc-h-HHHHHHHHHhhcCcccCCC-----------------------------------
Q 005759 309 -----------------WF-ASV-E-GFRQAAMDAIGQVKWVPPQ----------------------------------- 333 (678)
Q Consensus 309 -----------------WF-i~~-~-~~~~~~~~~i~~v~~~P~~----------------------------------- 333 (678)
|| ++. + +-.+...+--...+|+|.+
T Consensus 485 ~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF 564 (876)
T KOG0435|consen 485 EPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPF 564 (876)
T ss_pred CcccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcH
Confidence 22 111 0 0001111111123455555
Q ss_pred ------------------------------------------------------------------CCCCCCchhhhHHh
Q 005759 334 ------------------------------------------------------------------EAPGYGADVLRLWV 347 (678)
Q Consensus 334 ------------------------------------------------------------------~~~~yGaD~lRl~l 347 (678)
++.+||+|++|+++
T Consensus 565 ~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~i 644 (876)
T KOG0435|consen 565 TKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYI 644 (876)
T ss_pred HHHHhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHH
Confidence 22489999999998
Q ss_pred h-hcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCc-cCCCCCCHhHHHHHHHHHHHHHHHHHHHHh-cc
Q 005759 348 S-SVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNS-ISYDDLPMIDQYALFQLENIVKNIRESYES-YQ 424 (678)
Q Consensus 348 a-~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~-~~~~~~~~~D~~il~~l~~~~~~v~~~~e~-~~ 424 (678)
+ .+++.++++|++..+.++.+++.++|++..-++..-++-.+.+. ...+.....++-+.+..+.++++|+++|+. +.
T Consensus 645 lf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~s 724 (876)
T KOG0435|consen 645 LFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFS 724 (876)
T ss_pred HhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7 57889999999999999999999999998665543222111111 112233567788999999999999999995 67
Q ss_pred cHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCC
Q 005759 425 FFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDG 504 (678)
Q Consensus 425 f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~ 504 (678)
++.|++.+|.|.+. |..-+=... ++ + -....+|..+++||+|++||+|+|+|+.|+.. .
T Consensus 725 lNtaIS~~m~ltN~-l~~a~k~~~---~h-----~-------~~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~-----~ 783 (876)
T KOG0435|consen 725 LNTAISDMMGLTNA-LKKALKIVL---VH-----S-------PEFERALEALVIMLAPFAPHVASELWSALAND-----L 783 (876)
T ss_pred HHHHHHHHHHHHHH-HHHhhhhhh---hc-----C-------hHHHHHHHHHHHHHhccCchhHHHHHHHHhcc-----c
Confidence 99999999999864 554321100 01 1 12456778999999999999999999999753 1
Q ss_pred CCCcceeeccCCCCcccc
Q 005759 505 SAAEFVFESKWPVLDEKW 522 (678)
Q Consensus 505 ~~~~sV~~~~wP~~~~~~ 522 (678)
.-+....||+.++..
T Consensus 784 ---~~~~~~~WP~vd~~~ 798 (876)
T KOG0435|consen 784 ---SWVSDVKWPEVDPDY 798 (876)
T ss_pred ---cchhccCCccCChhh
Confidence 111223699988754
No 29
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-43 Score=374.77 Aligned_cols=520 Identities=19% Similarity=0.279 Sum_probs=373.7
Q ss_pred hHHhhhcccccccCccccCC--hHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEE--EE
Q 005759 2 ASFKRYGVWADWNNPYLTLD--PEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY--AV 77 (678)
Q Consensus 2 ~~~~~lGi~~DW~~~y~T~d--~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~--v~ 77 (678)
++++++|.-+||+|.|.|+| |.|.++|.|+|.+|.+.|-|..|++-..|||.++++..||+..-++|.. +.-| ++
T Consensus 190 ~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~-PqeytliK 268 (1080)
T KOG0437|consen 190 RDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVG-PQEYTLIK 268 (1080)
T ss_pred HHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCC-cceEEEEE
Confidence 57899999999999999998 9999999999999999999999999999999999999999998777644 4444 56
Q ss_pred EEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCce
Q 005759 78 FRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKV 157 (678)
Q Consensus 78 f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (678)
.++.+.....++.+.. .+++++.+|.||+||+|.+..+|+|+..|..++..+ ..+
T Consensus 269 le~le~~p~~l~~~~~--~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~-----------------------~~e 323 (1080)
T KOG0437|consen 269 LEVLEPFPKALSSLKD--LRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACN-----------------------ETE 323 (1080)
T ss_pred EEecccchhhcccccc--ceeeeeehhcCCccccCccceEEcCCccEEeEEecC-----------------------Cce
Confidence 6655544333222221 248999999999999999999999999999888652 135
Q ss_pred EEEEeccchHHHHHHhCC----ceEEEEeeecCcccCCEeeCCCCCC-cccEEEccCccccCCCCCceeccCCCCHHHHH
Q 005759 158 FIIVASDLVPTLEAKWGT----KLVIKKTLAGSDLENCRYVHPVDNR-QCPVVIGGDYITTESGTGLVHTAPGHGQEDYV 232 (678)
Q Consensus 158 ~~iia~~~~~~l~~~~~~----~~~i~~~~~G~~l~g~~~~~P~~~~-~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~ 232 (678)
.+|..+..+.+++.|.-. .+..+.++.|.+|.|..+..|+.-. .+.+ +|.--|..+.|||+|.++|+..||||.
T Consensus 324 ~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~-LPMlTi~~~KGTGvVtsVpsdsPDDf~ 402 (1080)
T KOG0437|consen 324 VFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYA-LPMLTILATKGTGVVTSVPSDSPDDFA 402 (1080)
T ss_pred EEEeehHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeee-ccceeeeccCCceeEEeCCCCCchhhh
Confidence 666666667777665311 3677789999999999999999754 4566 777889999999999999999999999
Q ss_pred HHHH-------cCC----------Cccccc---C-----------------------------CCCccccc--cCccCCc
Q 005759 233 TSLK-------YGL----------PILSPV---D-----------------------------DEGKFTEE--AGKFSGL 261 (678)
Q Consensus 233 ~~~~-------~~l----------~~~~~v---d-----------------------------~~G~~~~~--~~~~~G~ 261 (678)
..+. ||| |++..- | -+|.|... .|.|.|.
T Consensus 403 al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~ 482 (1080)
T KOG0437|consen 403 ALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGE 482 (1080)
T ss_pred HHHhhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccc
Confidence 8853 333 222210 0 01222211 3688999
Q ss_pred eecccchHHHHHHHHhcCceee-eeccccccccccCCCCCeEEcccCcccccch--HHHHHHHHHhhcC-----------
Q 005759 262 DVLGDGNVAVVKYLDEQMSLIM-EEPYEHKYPYDWRTKKPTIFRATEQWFASVE--GFRQAAMDAIGQV----------- 327 (678)
Q Consensus 262 ~v~~~~~~~ii~~L~~~g~l~~-~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~--~~~~~~~~~i~~v----------- 327 (678)
+| +++.+.|-..|.+.|..+. .++-++ +-.|||..+|.-+++|||+++. .||+.+.++++++
T Consensus 483 KV-e~~K~~i~~~li~~g~a~~y~EPEkq---VmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~f 558 (1080)
T KOG0437|consen 483 KV-EDAKPKIKTDLIETGDALKYNEPEKQ---VMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGF 558 (1080)
T ss_pred cH-HhhhhHHHHHHHhcccceeecCcchh---hhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHH
Confidence 99 6888889999999987664 333233 3499999999999999999984 7888888888754
Q ss_pred ----cccCCC----------------------------------------------------------------------
Q 005759 328 ----KWVPPQ---------------------------------------------------------------------- 333 (678)
Q Consensus 328 ----~~~P~~---------------------------------------------------------------------- 333 (678)
.|+-+|
T Consensus 559 E~tLdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~ 638 (1080)
T KOG0437|consen 559 EDTLDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNE 638 (1080)
T ss_pred HHHHHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccC
Confidence 344433
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 639 ~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNf 718 (1080)
T KOG0437|consen 639 PYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNF 718 (1080)
T ss_pred CCCcCCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCe
Confidence
Q ss_pred -----CCCCCCchhhhHHhhh-cCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCC-CCCHhHHHHH
Q 005759 334 -----EAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD-DLPMIDQYAL 406 (678)
Q Consensus 334 -----~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~-~~~~~D~~il 406 (678)
.+++||||+.|+.+|. +|-.+|.+|.+... ...+.++.+...++..++.+.+. +..+ .-...||.+.
T Consensus 719 mTL~qaieKFgad~tRlalAdaGD~veDANF~ea~A---nAaILRLyt~~ew~eEm~~~~s~---LrtGp~~~FaDrvf~ 792 (1080)
T KOG0437|consen 719 MTLEQAIEKFGADGTRLALADAGDGVEDANFVEANA---NAAILRLYTYVEWIEEMCENRSS---LRTGPASTFADRVFE 792 (1080)
T ss_pred eeHHHHHHHhCccceeeeeecccCCcccchhHHhcc---cHHHHHHHHHHHHHHHHHhhHHh---hccCchhhHHHHHHH
Confidence 3469999999999995 67778999976432 33466888888887666553221 1111 1137899999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhh
Q 005759 407 FQLENIVKNIRESYESYQFFKIFQII-QRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILP 485 (678)
Q Consensus 407 ~~l~~~~~~v~~~~e~~~f~~a~~~i-~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP 485 (678)
+.++.++...+++|+...|+.|++.- ++|- ...++|-+..-. ......+...+++.+.||+||.|
T Consensus 793 nemN~~i~~t~~aye~~~fk~aLK~Gfyd~q--aArD~Yrel~g~------------~mh~dLv~r~ietqtlLLaPi~P 858 (1080)
T KOG0437|consen 793 NEMNALIAKTERAYEDTLFKDALKYGFYDLQ--AARDMYRELCGE------------GMHRDLVFRFIETQTLLLAPICP 858 (1080)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHH--HHHHHHHHHhcc------------cccHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999974 4443 357777766421 12334678889999999999999
Q ss_pred HHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHH-hccccCC-CCceeE
Q 005759 486 HLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVA-RTGKLIG-SSLEAK 563 (678)
Q Consensus 486 ~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~-r~~~~i~-~~~~~~ 563 (678)
|+||.||..+... ..+|. .+||..++.-.-.........+.+..+|......+-.. ++.|..- .+.+.+
T Consensus 859 h~aeyiw~~~~~~--------~~~v~-~~wP~~s~~~e~~~~~~~yl~~~l~r~~~~l~~~~~~kkkk~K~~~~~~~p~~ 929 (1080)
T KOG0437|consen 859 HLAEYIWRTVLKK--------NFSVN-VGWPFVSPPDEKLGSSALYLKRTLKRLRAELEKQMLKKKKKKKGAEVPSKPLK 929 (1080)
T ss_pred HHHHHHHHHhccC--------Cceee-cCCCCCCCHHHHhhhhHHHHHHHHHHHHHHHHhhhchhhcccCCCCCCCCcce
Confidence 9999999988754 24554 59998764311100111234444555555544433222 2222111 234566
Q ss_pred EEEEeCC---hhHHHHHHHhh
Q 005759 564 VYLFTDD---ASLASRLREMC 581 (678)
Q Consensus 564 v~I~~~~---~~~~~~l~~~~ 581 (678)
.+|+++. +|..+.|..++
T Consensus 930 ~ti~Vae~fp~Wq~~cl~il~ 950 (1080)
T KOG0437|consen 930 LTIYVAEEFPEWQAQCLSILQ 950 (1080)
T ss_pred EEEEEeccCCHHHHHHHHHHH
Confidence 7777754 36655555543
No 30
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.4e-36 Score=342.27 Aligned_cols=384 Identities=16% Similarity=0.187 Sum_probs=251.1
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccce----E--
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRS----I-- 74 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~----~-- 74 (678)
+++|++|||++| ++++|++|.|.+.+|++|.+|+++|+||++.++++|||+|++.+++.|+.. .+.|..+ .
T Consensus 145 ~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~-~~~~~~~~~~~~~~ 221 (616)
T PLN02224 145 RTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE-NNCCPVHQMPCVAR 221 (616)
T ss_pred HHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC-CCCCCCCCCcceEE
Confidence 368999999665 999999999999999999999999999999999999999999999999852 1122111 2
Q ss_pred ---EEEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcc
Q 005759 75 ---YAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVL 151 (678)
Q Consensus 75 ---~v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~ 151 (678)
-.+|+|+++++.+.+.++ +.|.. +.|.... +++..|+
T Consensus 222 ~e~~~ff~Ls~~~~~L~~~~~------------~~~~~--------~~p~~~~--------------------~~~~~~l 261 (616)
T PLN02224 222 KEDNYFFALSKYQKPLEDILA------------QNPRF--------VQPSYRL--------------------NEVQSWI 261 (616)
T ss_pred ecceEEEEhHHHHHHHHHHHH------------hCCCc--------cCCHHHH--------------------HHHHHHH
Confidence 247899888766655443 23332 1233210 1112222
Q ss_pred cCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCC-CCcccEEEccCccccCCCCCceeccCCCCHHH
Q 005759 152 KDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVD-NRQCPVVIGGDYITTESGTGLVHTAPGHGQED 230 (678)
Q Consensus 152 ~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~-~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D 230 (678)
+++ .+.+-|++...+ | |.. .|.. ++.+ ||+.|+-.|.+..+-..+.
T Consensus 262 ~~g-L~d~~ISR~~~~-----W----------------GIp--vP~~~~~vi-------YVWfDAl~~Yls~~~~~~~-- 308 (616)
T PLN02224 262 KSG-LRDFSISRALVD-----W----------------GIP--VPDDDKQTI-------YVWFDALLGYISALTEDNK-- 308 (616)
T ss_pred hcC-CCCccccCCCCC-----C----------------ceE--CCCCCCcEE-------EEehhhHHHHHHHhccccc--
Confidence 221 222333332110 1 332 2332 2334 4555555554432210000
Q ss_pred HHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHH--HHHHhcCceeeeeccccccccccCCCCCeEEcccCc
Q 005759 231 YVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQ 308 (678)
Q Consensus 231 ~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii--~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~Q 308 (678)
+.+.. .....+.+..-+|.|+++. -.+.|+ .+|...|+-.+...+.|.| |
T Consensus 309 -----~~~~~-----~~~~~~w~~~v~~iGKDii--~fH~i~wpa~l~~~g~~~P~~i~~~g~---l------------- 360 (616)
T PLN02224 309 -----QQNLE-----TAVSFGWPASLHLIGKDIL--RFHAVYWPAMLMSAGLELPKMVFGHGF---L------------- 360 (616)
T ss_pred -----ccccc-----hhhccCCCcceEEEeeccc--ccHHHHHHHHHHHCCCCCCcEEEeccc---E-------------
Confidence 00000 0000112223478999986 244444 6777777666665555554 2
Q ss_pred ccccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhh-cCCCCceeeChhhhhH--HHHHHHHHHHHHHHHHhccc
Q 005759 309 WFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQ--MSDIYRKLRGTLRYLLGNLH 385 (678)
Q Consensus 309 WFi~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~--~~~~~~ki~n~~rf~l~nl~ 385 (678)
-.+-.+|.++..+.+. |..++++||+|++|||+++ +++.+|.+|+++.+.. .+++++.++|++.++++...
T Consensus 361 -~~eG~KMSKS~GN~i~-----p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~ 434 (616)
T PLN02224 361 -TKDGMKMGKSLGNTLE-----PFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLK 434 (616)
T ss_pred -ecCCccccccCCccCC-----HHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333355555544443 5556778999999999986 5678999999997643 46789999999887766554
Q ss_pred CCCCCCccCC-CCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccc--cCCCCChHhH
Q 005759 386 DWRVGNSISY-DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL--YTGGTTSFTR 462 (678)
Q Consensus 386 ~~~~~~~~~~-~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl--~~~~~~~~~r 462 (678)
.+..+ .++. ......|++++++++++++++.++|++|+|++|++.+++|+ +.+|+|++..+||- |.+..+..+.
T Consensus 435 k~~~~-~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~--~~~N~Yi~~~~PW~l~k~~~~~~~~~ 511 (616)
T PLN02224 435 KNCES-TLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG--NAGNTYMDQRAPWFLFKQGGVSAEEA 511 (616)
T ss_pred HhcCC-cCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhCCchhhhccccccHHHH
Confidence 32211 1121 12345689999999999999999999999999999999998 57999999999942 2111111233
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 005759 463 RSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 497 (678)
Q Consensus 463 ~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~ 497 (678)
.++..++.++++.+++||+|||||+||+||++|+.
T Consensus 512 ~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 512 AKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 56677899999999999999999999999999985
No 31
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.2e-35 Score=332.50 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=130.0
Q ss_pred CCCCCchhhhHHhhh-cCCCCceeeChhhhhH--HHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHH
Q 005759 335 APGYGADVLRLWVSS-VDYTGDVMIGPQVLRQ--MSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLEN 411 (678)
Q Consensus 335 ~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~--~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~ 411 (678)
+++||+|++|||+++ ++..+|++|+++.+.. ..+++++++|.++++.+.+.+... ...+...+...|+|+++++++
T Consensus 349 i~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~-~~~~~~~~~~~d~~ll~~l~~ 427 (556)
T PRK12268 349 LERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFG-GIVPPGELGDEDRELIAEAEA 427 (556)
T ss_pred HHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhcC-CcCCCCcCCcccHHHHHHHHH
Confidence 358999999999986 4667999999988754 456778888876655443322110 111223457789999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 005759 412 IVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDV 491 (678)
Q Consensus 412 ~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEi 491 (678)
+++.++++|++|+|+.|++.+++|+ +++|+|++..||+.... .+....+.++.++..+++.++++|+|||||+||||
T Consensus 428 ~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kpw~~~~-~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei 504 (556)
T PRK12268 428 LFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAPWKLAK-TDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKI 504 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCChhhhc-CCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999999999999999999999998 48999999999954332 22233345566667889999999999999999999
Q ss_pred HHhCCCCccccCCCCCcceeeccCCCC
Q 005759 492 WQNLPFAYTLEDGSAAEFVFESKWPVL 518 (678)
Q Consensus 492 w~~l~~~~~~~~~~~~~sV~~~~wP~~ 518 (678)
|++|+. +++....||..
T Consensus 505 ~~~Lg~----------~~~~~~~w~~~ 521 (556)
T PRK12268 505 WEMLGG----------ENIEKLTWESL 521 (556)
T ss_pred HHHhCC----------CCCcccchhhh
Confidence 999974 24455678754
No 32
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=9.8e-36 Score=344.97 Aligned_cols=378 Identities=13% Similarity=0.135 Sum_probs=245.9
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccc--eEE---
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSR--SIY--- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~--~~~--- 75 (678)
+++|++|||++| ++++|++|.|.+++|++|.+|+++|+||++.++++|||+|+|+|+|..|+ |.|.. |.+
T Consensus 94 ~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~---G~CP~~~C~~~~a 168 (801)
T PLN02610 94 KEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVE---GTCPTEGCNYDSA 168 (801)
T ss_pred HHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhc---CcCCccccCcccc
Confidence 468999999887 99999999999999999999999999999999999999999999999875 23322 211
Q ss_pred ------------------------------------EEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEEC
Q 005759 76 ------------------------------------AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVN 119 (678)
Q Consensus 76 ------------------------------------v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~ 119 (678)
.+|+|+.+++.+.+.+++ +| +.
T Consensus 169 ~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~------------~~----------~~ 226 (801)
T PLN02610 169 RGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINE------------TS----------VA 226 (801)
T ss_pred ccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHh------------CC----------CC
Confidence 123333333322222210 00 00
Q ss_pred CCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCC-
Q 005759 120 AKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVD- 198 (678)
Q Consensus 120 p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~- 198 (678)
|..+... ...+..|+.++ .+ +..|.+.++ -|.. .|+.
T Consensus 227 ~~~~~n~-----------------~~~~~~~l~~g-L~------------------d~~IsR~~~----WGip--vP~~~ 264 (801)
T PLN02610 227 GGWSQNA-----------------IQTTNAWLRDG-LK------------------PRCITRDLK----WGVP--VPLEK 264 (801)
T ss_pred CCcCHHH-----------------HHHHHHHHhCC-CC------------------CcceeeecC----Cccc--CCCCC
Confidence 1100000 00000111110 11 233333221 1443 3444
Q ss_pred --CCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHH--HH
Q 005759 199 --NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV--KY 274 (678)
Q Consensus 199 --~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii--~~ 274 (678)
++.++ |+.|+-.|.+.++-+.+. +|. ++ ++- + ++. ..-+|.|+++. -.+.|+ .+
T Consensus 265 ~~~~v~Y-------VWfDAl~~Yis~~~~~~~-~~~---~~-W~~--~--~~~----~~~hfiGKDi~--~fH~i~wPa~ 322 (801)
T PLN02610 265 YKDKVFY-------VWFDAPIGYVSITACYTP-EWE---KW-WKN--P--ENV----ELYQFMGKDNV--PFHTVMFPST 322 (801)
T ss_pred CCCcEEE-------EehhhHHHHHHHHhhhhh-HHH---Hh-cCC--c--ccc----eEEEEEeeecc--hhHHHHHHHH
Confidence 23344 455554454433322221 221 11 110 0 000 11379999986 244444 88
Q ss_pred HHhcCce--eeeeccccccccccCCCCCeEEcccCcccccchHHHHHHHHHhhcCcccCCCCCCC-CCchhhhHHhhh-c
Q 005759 275 LDEQMSL--IMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPG-YGADVLRLWVSS-V 350 (678)
Q Consensus 275 L~~~g~l--~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v~~~P~~~~~~-yGaD~lRl~la~-~ 350 (678)
|...|.- ++...+.|.| |-.+-.+|.++..+.+. |..+++. ||+|++|||+++ .
T Consensus 323 L~a~g~~~~~p~~i~~~g~-----------------l~~eG~KMSKS~GNvV~-----p~~~i~~~yg~D~lRyyLl~~~ 380 (801)
T PLN02610 323 LLGTGENWTMMKTISVTEY-----------------LNYEGGKFSKSKGVGVF-----GNDAKDTNIPVEVWRYYLLTNR 380 (801)
T ss_pred HHhCCCCcCCCCEEEeccC-----------------EecCCceecCcCCcccC-----HHHHHhccCCchHhHHHhhhcC
Confidence 9888853 4555555655 33344455555444433 5446664 999999999985 6
Q ss_pred CCCCceeeChhhhhH--HHHHHHHHHHHHHHHHhcccC-----CCCCCccCC---CCCCHhHHHHHHHHHHHHHHHHHHH
Q 005759 351 DYTGDVMIGPQVLRQ--MSDIYRKLRGTLRYLLGNLHD-----WRVGNSISY---DDLPMIDQYALFQLENIVKNIRESY 420 (678)
Q Consensus 351 ~~~~D~~~s~~~l~~--~~~~~~ki~n~~rf~l~nl~~-----~~~~~~~~~---~~~~~~D~~il~~l~~~~~~v~~~~ 420 (678)
++++|.+||++.+.. ++++++.++|++.++++.+.. |++ .+|. .+...+|+|++++++++++++.++|
T Consensus 381 p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g--~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m 458 (801)
T PLN02610 381 PEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGS--VIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM 458 (801)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC--cCCCccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 788999999998865 467799999988877766652 322 2221 1245679999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCCh-HhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 005759 421 ESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTS-FTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 497 (678)
Q Consensus 421 e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~-~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~ 497 (678)
++|+|++|++.+++|. +++|+||+..+| |...+++ .+...+++++.++++.+++||+||||++||+||++|+.
T Consensus 459 e~~~~~~Al~~I~~l~--~~~NkYIe~~kP--W~L~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 459 EKVKLKQGLKTAMSIS--SEGNAYLQESQF--WKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HhcCHHHHHHHHHHHH--HHHHHHHHhcCc--hhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 9999999999999986 579999999999 6654433 33456777778899999999999999999999999984
No 33
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-35 Score=343.48 Aligned_cols=378 Identities=19% Similarity=0.272 Sum_probs=259.5
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEE-----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY----- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~----- 75 (678)
+++|++|||++| ++++|+|+.|.+.++++|.+|+++|+||++.++++|||.|+++|++.++.. .++|+.|..
T Consensus 80 k~~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~-~~~c~~cg~~~e~~ 156 (648)
T PRK12267 80 KELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVD-GGKCPDCGREVELV 156 (648)
T ss_pred HHHHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhcc-CCcCCCCCCcCeEE
Confidence 478999999887 899999999999999999999999999999999999999999999999762 146655532
Q ss_pred ----EEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCC-Cc
Q 005759 76 ----AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPG-NV 150 (678)
Q Consensus 76 ----v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~-~~ 150 (678)
.+|+++++++.+.+.++. .|.. +.|... ++++. +|
T Consensus 157 ~~~~~f~~l~~~~~~l~~~~~~------------~~~~--------~~p~~~--------------------~~~~~~~~ 196 (648)
T PRK12267 157 KEESYFFRMSKYQDRLLEYYEE------------NPDF--------IQPESR--------------------KNEMINNF 196 (648)
T ss_pred ecceEEEEcHHHHHHHHHHHhh------------CCcc--------cCCHHH--------------------HHHHHHHH
Confidence 368888776665544321 1111 123321 11122 23
Q ss_pred ccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceecc--CCCCH
Q 005759 151 LKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTA--PGHGQ 228 (678)
Q Consensus 151 ~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~a--Pahg~ 228 (678)
++++ ...|.|+++.++ | |.. .|.... .| + ||+.|++.|.+.+. |....
T Consensus 197 l~~~-l~D~~ISR~~~~-----W----------------Gip--vP~~~~--~v-~---yVWfDA~~~y~s~~~~~~~~~ 246 (648)
T PRK12267 197 IKPG-LEDLSISRTSFD-----W----------------GIP--VPFDPK--HV-V---YVWIDALLNYITALGYGSDDD 246 (648)
T ss_pred hhCC-CCCcccCCCCCC-----c----------------ceE--CCCCCC--CE-E---EEcccchHHHHHHcCCCCCCc
Confidence 3321 344555553211 2 322 233221 12 3 66777776654332 11011
Q ss_pred HHHHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHH--HHHHhcCceeeeeccccccccccCCCCCeEEccc
Q 005759 229 EDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRAT 306 (678)
Q Consensus 229 ~D~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii--~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t 306 (678)
++|. + +.+..-+|.|+++. -.+.++ .+|...|...++..+.|.+
T Consensus 247 ~~~~---~--------------~wp~~~~~~GkDii--~fH~i~wpa~l~~~~~~~p~~v~~hg~--------------- 292 (648)
T PRK12267 247 ELFK---K--------------FWPADVHLVGKDIL--RFHAIYWPIMLMALGLPLPKKVFAHGW--------------- 292 (648)
T ss_pred hHHH---h--------------hcccceEEEeeeec--chhHHHHHHHHHhCCCCCCcEEEecce---------------
Confidence 1221 1 11222368899985 245555 7777777655555555554
Q ss_pred CcccccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhh-cCCCCceeeChhhhhH--HHHHHHHHHHHHHHHHhc
Q 005759 307 EQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQ--MSDIYRKLRGTLRYLLGN 383 (678)
Q Consensus 307 ~QWFi~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~--~~~~~~ki~n~~rf~l~n 383 (678)
|...-.+|.++..+.+. |..++++||+|+||||+++ .++.+|.+|+++.+.. .+++.++++|++.++++.
T Consensus 293 --l~~eg~KMSKS~GN~i~-----p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~ 365 (648)
T PRK12267 293 --WLMKDGKMSKSKGNVVD-----PEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAM 365 (648)
T ss_pred --EEECCceecccCCcccC-----HHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333345555444433 5556779999999999985 6789999999999865 567889999998877766
Q ss_pred ccCCCCCCccC-CCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCC---h
Q 005759 384 LHDWRVGNSIS-YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTT---S 459 (678)
Q Consensus 384 l~~~~~~~~~~-~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~---~ 459 (678)
+..+..+ .++ ...+...|+|++++++++++++.++|++|+|++|++.+++|+. ++|+|++..|| |...++ .
T Consensus 366 ~~~~~~~-~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~--~~N~Yi~~~kp--W~~~~~~~~~ 440 (648)
T PRK12267 366 INKYFDG-EIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLIS--RANKYIDETAP--WVLAKDEGKK 440 (648)
T ss_pred HHHhcCC-cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHhCCC--hhhhcCcccH
Confidence 5542211 222 2345678999999999999999999999999999999999984 79999999999 654332 2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 005759 460 FTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 497 (678)
Q Consensus 460 ~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~ 497 (678)
.+.+++++++.++++.++++|+|||||+||+||++|+.
T Consensus 441 ~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 441 ERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 33456777888999999999999999999999999985
No 34
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=3.7e-34 Score=324.33 Aligned_cols=158 Identities=23% Similarity=0.287 Sum_probs=131.8
Q ss_pred CCCCCchhhhHHhhh-cCCCCceeeChhhhhHH--HHHHHHHHHHHHHHHhcccCCCCCCccC-CCCCCHhHHHHHHHHH
Q 005759 335 APGYGADVLRLWVSS-VDYTGDVMIGPQVLRQM--SDIYRKLRGTLRYLLGNLHDWRVGNSIS-YDDLPMIDQYALFQLE 410 (678)
Q Consensus 335 ~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~--~~~~~ki~n~~rf~l~nl~~~~~~~~~~-~~~~~~~D~~il~~l~ 410 (678)
+++||+|++|||+++ .+..+|++|+++.++.. .+++++++|+++++++.+.+... +.++ .......|+|++++++
T Consensus 342 i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~-~~~~~~~~~~~~d~~ll~~l~ 420 (530)
T TIGR00398 342 LARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFN-GVLPSEDITDEEDKKLLKLIN 420 (530)
T ss_pred HHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcCCCCcccchhhHHHHHHHH
Confidence 458999999999987 56789999999998776 67789999999877665543211 1122 1234578999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 005759 411 NIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAED 490 (678)
Q Consensus 411 ~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEE 490 (678)
++.+.++++|++|+|+.|++.+++|+ +++|+|++.+||+.+. +++.+++++++++.++++.++++|+|||||+|||
T Consensus 421 ~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~~--~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~ 496 (530)
T TIGR00398 421 EALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWELF--KQSPRLKELLAVCSMLIRVLSILLYPIMPKLSEK 496 (530)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhhc--CChHHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence 99999999999999999999999998 4899999999995554 3444667899999999999999999999999999
Q ss_pred HHHhCCC
Q 005759 491 VWQNLPF 497 (678)
Q Consensus 491 iw~~l~~ 497 (678)
||++|+.
T Consensus 497 i~~~L~~ 503 (530)
T TIGR00398 497 ILKFLNF 503 (530)
T ss_pred HHHHhCC
Confidence 9999974
No 35
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-34 Score=312.42 Aligned_cols=411 Identities=17% Similarity=0.173 Sum_probs=252.3
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++.|+.|||++| ++.+|++|.|.+.+|++|.+|+++|+||.+..+++|||+|++.|+|.+|+- .|..|.+ ..
T Consensus 81 ~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g---~cp~cg~---~~ 152 (558)
T COG0143 81 KELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEG---TCPKCGG---ED 152 (558)
T ss_pred HHHHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheec---cCCCcCc---cc
Confidence 467999999999 999999999999999999999999999999999999999999999999863 3322221 00
Q ss_pred eeCCCCCc---cccccc-CCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCc
Q 005759 81 VSAPPSTS---GLLNEF-LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKK 156 (678)
Q Consensus 81 ~~~~~~~~---~~l~~~-~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (678)
.. .+.-. ..+... +.+-.-.+-=.+|+- -..++ |. ++.. .-...+.+|++..
T Consensus 153 ar-GD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~--------r~~~h-yF-f~L~-----------~~~~~L~~~~~~~-- 208 (558)
T COG0143 153 AR-GDQCENCGRTLDPTELINPVCVISGATPEV--------REEEH-YF-FRLS-----------KFQDKLLEWYESN-- 208 (558)
T ss_pred cC-cchhhhccCcCCchhcCCCeeEeeCCCccc--------cccee-EE-EEHH-----------HhHHHHHHHHHhC--
Confidence 00 00000 000000 000001111111211 11111 11 1110 0000111111111
Q ss_pred eEEEEeccchHHHHHH--hCC-ceEEEE-eeecCcccCCEeeCCCC-CCcccEEEccCccccCCCCCceeccCC----CC
Q 005759 157 VFIIVASDLVPTLEAK--WGT-KLVIKK-TLAGSDLENCRYVHPVD-NRQCPVVIGGDYITTESGTGLVHTAPG----HG 227 (678)
Q Consensus 157 ~~~iia~~~~~~l~~~--~~~-~~~i~~-~~~G~~l~g~~~~~P~~-~~~~pv~i~~~~V~~~~GTG~V~~aPa----hg 227 (678)
...+....+...+..- -|. +..|.+ .+.- |.. .|.. ++.+ ||+.|+-.|.+-.+-. ..
T Consensus 209 ~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~W----Gip--vP~~p~kv~-------YVWfDAligYisa~~~~~~~~~ 275 (558)
T COG0143 209 PDFIWPANRRNEVLNFLKEGLKDLSITRTDLDW----GIP--VPGDPGKVI-------YVWFDALIGYISALGELAEIGD 275 (558)
T ss_pred ccccCChHHHHHHHHHHHccCcccceecCCCCC----Ccc--CCCCCCCEE-------EEeeccHHHHHHHhcchhccCC
Confidence 0111111111111110 011 233333 1110 322 2322 2234 4555544443322100 12
Q ss_pred HHHHHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHH--HHHHhcCceeeeeccccccccccCCCCCeEEcc
Q 005759 228 QEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA 305 (678)
Q Consensus 228 ~~D~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii--~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~ 305 (678)
.+||. ++-.. + ..+.-+|.|+++. -.+.|+ .+|...|.-++...+.|.|
T Consensus 276 ~~~~~---~~W~~-----~-----~~e~vhfIGKDii--~FHav~wPamL~~~~~~lP~~i~ahg~-------------- 326 (558)
T COG0143 276 DEDFK---KFWPA-----D-----DTELVHFIGKDII--RFHAVYWPAMLMAAGLPLPTRIFAHGF-------------- 326 (558)
T ss_pred hHHHH---hhCCC-----C-----CceEEEEeccccC--cchhhHHHHHHHhCCCCCCCEEEeeee--------------
Confidence 23332 11100 0 0112489999996 355555 8999988877776666766
Q ss_pred cCcccccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhh-cCCCCceeeChhhhhH--HHHHHHHHHHHHHHHHh
Q 005759 306 TEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQ--MSDIYRKLRGTLRYLLG 382 (678)
Q Consensus 306 t~QWFi~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~--~~~~~~ki~n~~rf~l~ 382 (678)
|..+-.+|.++....+. |..++..||+|+||||++. .+.++|.+||++.+.+ ++++.++++|+++++++
T Consensus 327 ---l~~~G~KmSKSrG~~V~-----~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~ 398 (558)
T COG0143 327 ---LTLEGQKMSKSRGNVVD-----PDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLG 398 (558)
T ss_pred ---EEECCccccccCCcEEe-----HHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444443 5556668999999999985 7889999999999976 57889999999988888
Q ss_pred cccCCCCCCccCC-C-CCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCCh-
Q 005759 383 NLHDWRVGNSISY-D-DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTS- 459 (678)
Q Consensus 383 nl~~~~~~~~~~~-~-~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~- 459 (678)
.+.++..+ .+|. . .....|+.++..+.++...+.++|++++|++|+..+++++. .+|.||+..+| |...+++
T Consensus 399 fi~k~~~g-~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~--~~N~Yi~~~~P--W~l~k~~~ 473 (558)
T COG0143 399 FINKYFDG-VVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALAS--RANKYIDEQAP--WKLAKEDK 473 (558)
T ss_pred HHHhccCC-cCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHhhcCCC--chhhccCc
Confidence 76654332 2221 1 11278999999999999999999999999999999999994 69999999999 7665542
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 005759 460 -FTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 498 (678)
Q Consensus 460 -~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~ 498 (678)
.+.+++++++.++++.++.+|+||||.+|++||++|+..
T Consensus 474 ~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 474 RERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCc
Confidence 233567777788899999999999999999999999853
No 36
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.6e-33 Score=321.06 Aligned_cols=409 Identities=15% Similarity=0.178 Sum_probs=243.1
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
+++|++||+++| .+++|++|+|.+.++++|.+|+++|+||++.++|+|||+|+++|++.+|+ |.|..|....
T Consensus 78 ~~~~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~---g~cp~C~~~d--- 149 (673)
T PRK00133 78 KRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK---GTCPKCGAED--- 149 (673)
T ss_pred HHHHHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee---cccCCCCCcc---
Confidence 468999999987 68999999999999999999999999999999999999999999999885 3443333210
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcc-eeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPW-TVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFI 159 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~-Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (678)
.+.+.- +.-.....+..+. .|- ++-|+....+.-+.-|. +.. .-++.+.++++.. ..
T Consensus 150 -~~g~~c-e~cg~~~~~~~l~----~~~~~~~g~~~e~~~~~~~f~--~l~-----------~~~~~l~~~~~~~--~~- 207 (673)
T PRK00133 150 -QYGDNC-EVCGATYSPTELI----NPKSAISGATPVLKESEHFFF--KLP-----------RFEEFLKEWITRS--GE- 207 (673)
T ss_pred -cCCchh-hhccccCChHhhc----CCccccCCCcceEEecceEEE--EHH-----------HHHHHHHHHHhcC--CC-
Confidence 000000 0000000000000 000 00111111111111111 111 0001111122110 00
Q ss_pred EEeccchHHHHHHh--C-CceEEEEeeecCcccCCEeeCCCC-CCcccEEEccCccccCCCCCceeccCCC----CHHHH
Q 005759 160 IVASDLVPTLEAKW--G-TKLVIKKTLAGSDLENCRYVHPVD-NRQCPVVIGGDYITTESGTGLVHTAPGH----GQEDY 231 (678)
Q Consensus 160 iia~~~~~~l~~~~--~-~~~~i~~~~~G~~l~g~~~~~P~~-~~~~pv~i~~~~V~~~~GTG~V~~aPah----g~~D~ 231 (678)
+.......+..-+ + .+..|.+.+. .-|.. .|.. ++.+. |+.|.-.|.+..+-++ +.++|
T Consensus 208 -~~~~~~~~~~~~l~~~l~d~~ISR~~~---W~Gip--vP~~~~~~iy-------VW~dal~~Yl~~~~~~~~~~~~~~~ 274 (673)
T PRK00133 208 -LQPNVANKMKEWLEEGLQDWDISRDAP---YFGFE--IPGAPGKVFY-------VWLDAPIGYISSTKNLCDKRGGLDW 274 (673)
T ss_pred -CCHHHHHHHHHHHhCCCcccceeeeCC---ccceE--CCCCCCeEEE-------EcccchhhhhHHHhhhcccccchhH
Confidence 1111111111111 1 1344444211 11332 2322 12234 4444433333222111 11222
Q ss_pred HHHHHcCCCcccccCCCCccccccCccCCceecccchHHHH--HHHHhcCceeeeeccccccccccCCCCCeEEcccCcc
Q 005759 232 VTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQW 309 (678)
Q Consensus 232 ~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii--~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QW 309 (678)
. ++..+ +.+ ...-+|.|+++. -.+.|+ .+|...|+.+++..+.|.+ |
T Consensus 275 ~---~~w~~-----~~~----~~~v~~iGkDi~--~fH~i~wpa~l~a~g~~lP~~v~~hg~-----------------v 323 (673)
T PRK00133 275 D---EYWKK-----DSD----TELYHFIGKDII--YFHTLFWPAMLEGAGYRLPTNVFAHGF-----------------L 323 (673)
T ss_pred H---HhcCC-----CCC----ceEEEEEeecch--hHHHHHHHHHHHhCCCCCCCEEeeecc-----------------E
Confidence 2 11100 000 011368899985 234333 7888888776665555554 2
Q ss_pred cccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhh-cCCC-CceeeChhhhhH--HHHHHHHHHHHHHHHHhccc
Q 005759 310 FASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYT-GDVMIGPQVLRQ--MSDIYRKLRGTLRYLLGNLH 385 (678)
Q Consensus 310 Fi~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~-~~~~-~D~~~s~~~l~~--~~~~~~ki~n~~rf~l~nl~ 385 (678)
..+-.+|+++..+.+. |..++++||+|++|||+++ .+.+ +|.+|+++.+.. .++++++++|+++++.+.+.
T Consensus 324 ~~~G~KMSKS~GNvV~-----p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~ 398 (673)
T PRK00133 324 TVEGAKMSKSRGTFIW-----ARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFIN 398 (673)
T ss_pred EecCCcccccCCcccC-----HHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333455555555444 6667789999999999985 5567 899999988753 56788999998887765543
Q ss_pred C-CCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCC-ChHhHH
Q 005759 386 D-WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGT-TSFTRR 463 (678)
Q Consensus 386 ~-~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~-~~~~r~ 463 (678)
+ |.+ .++ ....|+|++++++++++.+.++|++|+|+.|++.+++|+ +++|+|++..|| |...+ +..+++
T Consensus 399 k~~~~--~~~---~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~kp--w~~~~~~~~~~~ 469 (673)
T PRK00133 399 KRFDG--KLP---DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNEP--WKLAKQDGERLQ 469 (673)
T ss_pred HhcCC--CCC---CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCC--hhhhcCCHHHHH
Confidence 2 221 111 245699999999999999999999999999999999997 589999999999 54333 333445
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 005759 464 SCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 497 (678)
Q Consensus 464 ~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~ 497 (678)
++++++.++++.++++|+|||||+||+||++|+.
T Consensus 470 ~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 470 AVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred HHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 6777788899999999999999999999999985
No 37
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=1.5e-30 Score=294.38 Aligned_cols=377 Identities=17% Similarity=0.200 Sum_probs=232.7
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEE-----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY----- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~----- 75 (678)
+++|++|||.+| .+++|+++.|...++++|.+|+++|+||++.++|+|||+|+|+|+++|+.-...+|++|.-
T Consensus 77 ~~~l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~ 154 (511)
T PRK11893 77 KRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWV 154 (511)
T ss_pred HHHHHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEE
Confidence 368999999876 7899999999999999999999999999999999999999999999998621124555431
Q ss_pred ----EEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcc
Q 005759 76 ----AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVL 151 (678)
Q Consensus 76 ----v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~ 151 (678)
.+|+++++++.+.+.++. .|.. +.|+... +.+.+++
T Consensus 155 ~~~~~f~~l~~~~~~l~~~~~~------------~~~~--------~~p~~~~--------------------~~~~~~l 194 (511)
T PRK11893 155 EEESYFFRLSKYQDKLLELYEA------------NPDF--------IQPASRR--------------------NEVISFV 194 (511)
T ss_pred ecCeEEEEcHHHHHHHHHHHHh------------CCCc--------cCCHHHH--------------------HHHHHHH
Confidence 246666554433322210 0100 1122100 0000111
Q ss_pred cCCCceEEEEec-cchHHHHHHhCCceEEEEeeecCcccCCEeeCCCC-CCcccEEEccCccccCCCCCceec--cCCC-
Q 005759 152 KDQKKVFIIVAS-DLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVD-NRQCPVVIGGDYITTESGTGLVHT--APGH- 226 (678)
Q Consensus 152 ~~~~~~~~iia~-~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~-~~~~pv~i~~~~V~~~~GTG~V~~--aPah- 226 (678)
++ +...|.|++ .+ .| |.. .|.. ++.+ ||+.++|.|.... -|+.
T Consensus 195 ~~-~~~D~~isR~~~------~W----------------Gip--iP~~~~~~~-------~vWfda~~~y~s~~~~p~~~ 242 (511)
T PRK11893 195 KS-GLKDLSISRTNF------DW----------------GIP--VPGDPKHVI-------YVWFDALTNYLTALGYPDDE 242 (511)
T ss_pred HC-CCCCcccCCCCC------CC----------------Ccc--CCCCCCceE-------EEEecCcHHHHhHhcccccc
Confidence 11 012333333 11 01 221 1221 1222 3555555543321 1220
Q ss_pred -CH-HHHHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHH--HHHHhcCceeeeeccccccccccCCCCCeE
Q 005759 227 -GQ-EDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRTKKPTI 302 (678)
Q Consensus 227 -g~-~D~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii--~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi 302 (678)
+. +++. .+....-++.|++.. . ...+. ..+...|.-.++..+.|.+
T Consensus 243 ~~~~~~~~-----------------~~~~~D~~~~G~D~~-~-~h~~~~~a~~~a~~~~~p~~~~~~g~----------- 292 (511)
T PRK11893 243 ELLAELFN-----------------KYWPADVHLIGKDIL-R-FHAVYWPAFLMAAGLPLPKRVFAHGF----------- 292 (511)
T ss_pred ccchhHHH-----------------hcCCCcceEeccccc-c-cchhHHHHHHHhCCCCCCCEEEeecc-----------
Confidence 00 1111 111111256777764 1 22222 3333323222211111211
Q ss_pred EcccCcccccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhhc-CCCCceeeChhhhhH--HHHHHHHHHHHHHH
Q 005759 303 FRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQ--MSDIYRKLRGTLRY 379 (678)
Q Consensus 303 ~r~t~QWFi~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~~-~~~~D~~~s~~~l~~--~~~~~~ki~n~~rf 379 (678)
+.++-.+|+++..+.+. |..++++||+|++|||+++. ++.+|++|+++.+.. ..++.++++|++.+
T Consensus 293 ------v~~~G~KMSKS~GN~i~-----~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r 361 (511)
T PRK11893 293 ------LTLDGEKMSKSLGNVID-----PFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQR 361 (511)
T ss_pred ------EEECCeeecccCCcEEc-----HHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233355555444433 44466789999999999875 778999999999865 34567788888765
Q ss_pred HHhcccCCCCCCccC-CCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCC-
Q 005759 380 LLGNLHDWRVGNSIS-YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGT- 457 (678)
Q Consensus 380 ~l~nl~~~~~~~~~~-~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~- 457 (678)
+...+..... ..++ ...+...|+|++++++++.+.+.++|++|+|+.|++.+++|+. .+|+|++..|| |...+
T Consensus 362 ~~~~~~~~~~-~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~--~~n~y~~~~~p--w~~~~~ 436 (511)
T PRK11893 362 TLSMIAKNFD-GKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVR--AANKYIDEQAP--WSLAKT 436 (511)
T ss_pred HHHHHHHhcC-CCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHhhCCC--hhhhcC
Confidence 4433321100 0111 1235678999999999999999999999999999999999984 68999999999 44333
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 005759 458 TSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 497 (678)
Q Consensus 458 ~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~ 497 (678)
+..+++++..+++++++.++++|+|||||+||+||++|+.
T Consensus 437 ~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 437 DPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 3344567888899999999999999999999999999974
No 38
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.4e-29 Score=255.77 Aligned_cols=380 Identities=14% Similarity=0.152 Sum_probs=250.3
Q ss_pred hHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCccc----------
Q 005759 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVS---------- 71 (678)
Q Consensus 2 ~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~---------- 71 (678)
+.|+..|+.++ ++++|+||+|++.||+.+..+.++|+||+|.+.++||.+|+|++.|++|.... .++
T Consensus 116 qL~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p-~~~gk~vsmEsg~ 192 (578)
T KOG0436|consen 116 QLWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNP-CPPGKVVSMESGN 192 (578)
T ss_pred HHHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCC-CCCCceeeeccCC
Confidence 56888999998 99999999999999999999999999999999999999999999999986422 121
Q ss_pred ceEE-----EEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCC
Q 005759 72 RSIY-----AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSR 146 (678)
Q Consensus 72 ~~~~-----v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~ 146 (678)
+.+| .+|+++.++..+.+.+.. ||++...-. ...+
T Consensus 193 ~vv~~kE~NY~FrLSkfqk~l~d~lrk-------------------------NP~fvqPs~---------------~~~q 232 (578)
T KOG0436|consen 193 PVVWRKEDNYFFRLSKFQKPLEDHLRK-------------------------NPRFVQPSY---------------FHNQ 232 (578)
T ss_pred ceeEecccceeeeHHhhhhHHHHHHhc-------------------------CCCccCchH---------------HHHH
Confidence 1111 246666665554444332 444421100 1112
Q ss_pred CCCcccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCC---CcccEEEccCccccCCCCCceecc
Q 005759 147 PGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDN---RQCPVVIGGDYITTESGTGLVHTA 223 (678)
Q Consensus 147 ~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~---~~~pv~i~~~~V~~~~GTG~V~~a 223 (678)
+.++++++ ...+.|++.. . -+.+..|+.+ ++++||++| --|.+...
T Consensus 233 Vl~~lktg-lpDlSISRps---------------------a--rl~WGIPvP~ddsQtIYVWfDA-------L~nYiSvi 281 (578)
T KOG0436|consen 233 VLSWLKTG-LPDLSISRPS---------------------A--RLDWGIPVPGDDSQTIYVWFDA-------LLNYISVI 281 (578)
T ss_pred HHHHHHcC-CCcccccChh---------------------h--hcccCCCCCCCCcceEEEeHHH-------HhhHHHhh
Confidence 22222221 1222222210 0 0111122222 244555433 22221111
Q ss_pred CCCCHHHHHHHHHcCCCcccccCCCCccc---cccCccCCceecccchHHHH--HHHHhcCceeeeeccccccccccCCC
Q 005759 224 PGHGQEDYVTSLKYGLPILSPVDDEGKFT---EEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRTK 298 (678)
Q Consensus 224 Pahg~~D~~~~~~~~l~~~~~vd~~G~~~---~~~~~~~G~~v~~~~~~~ii--~~L~~~g~l~~~~~~~h~yp~~wr~~ 298 (678)
- . +. ++ -+.++.+. +..-+..|++|++ .+.|. .+|...|+-+++..+.|+. |.+
T Consensus 282 g-~-~~-----~~--------~N~k~~ls~~wPat~HvIGKDIlr--FHavYWPafLmaAGlplP~~I~vHgh---wt~- 340 (578)
T KOG0436|consen 282 G-Y-PN-----KQ--------QNLKTALSFGWPATLHVIGKDILR--FHAVYWPAFLMAAGLPLPKMIFVHGH---WTK- 340 (578)
T ss_pred c-C-Cc-----hh--------ccccceeecCCCceeeehhhhhhh--hhhhhhHHHHHhcCCCCccEEEEeee---eee-
Confidence 0 0 00 00 11122221 2234788999963 44444 9999999999999989988 543
Q ss_pred CCeEEcccCcccccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhh-hcCCCCceeeChhhhhHH--HHHHHHHHH
Q 005759 299 KPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVS-SVDYTGDVMIGPQVLRQM--SDIYRKLRG 375 (678)
Q Consensus 299 ~pvi~r~t~QWFi~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la-~~~~~~D~~~s~~~l~~~--~~~~~ki~n 375 (678)
+--+|.+++.+.++ |-+.+.+||+|++|||+. .+.++.|.+|+++.+... .++.++++|
T Consensus 341 -------------ngmKMsKSLGNvvd-----P~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~ 402 (578)
T KOG0436|consen 341 -------------NGMKMSKSLGNVVD-----PFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGN 402 (578)
T ss_pred -------------cceecchhhccccC-----HHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 33356667777766 666778999999999987 477899999999888654 567899999
Q ss_pred HHHHHHh---cccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccc
Q 005759 376 TLRYLLG---NLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 452 (678)
Q Consensus 376 ~~rf~l~---nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl 452 (678)
++.+..+ |..+..+....+.......+.-+.+.+.++.+.+.+.|+++.+.+|++++....+ -.|.|++..+|
T Consensus 403 LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n--~~ntlvq~~aP-- 478 (578)
T KOG0436|consen 403 LLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGN--AGNTLVQQRAP-- 478 (578)
T ss_pred HHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHH--hhhhhhhhcCC--
Confidence 9998877 2222111111111112334556788899999999999999999999999998875 49999999999
Q ss_pred cCCCCCh----HhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 005759 453 YTGGTTS----FTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 498 (678)
Q Consensus 453 ~~~~~~~----~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~ 498 (678)
|....++ +.......++.++|+++.++|+||+|.++.+++++|+-.
T Consensus 479 Wkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 479 WKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred ceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 5543333 223445555678899999999999999999999999854
No 39
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.95 E-value=1.5e-27 Score=232.47 Aligned_cols=179 Identities=45% Similarity=0.845 Sum_probs=152.6
Q ss_pred eChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCc-cCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 005759 358 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNS-ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFI 436 (678)
Q Consensus 358 ~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~-~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~ 436 (678)
||+++++++.++++|+||++||+++++.++.+... .....+...|+|++++++.++++++++|++|+|++|++.+++|+
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~ 80 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFC 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 57789999999999999999999999887754311 11245678999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCC
Q 005759 437 IVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 516 (678)
Q Consensus 437 ~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP 516 (678)
++++||+||+.+|||+|++.+++..+++++.+++.+++.++++|+|||||+|||+|++|+.. ...++|+.++||
T Consensus 81 ~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~------~~~~~v~~~~wP 154 (180)
T cd07960 81 TVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE------KKEESVFLEDWP 154 (180)
T ss_pred HHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc------CCCCCeeccCCC
Confidence 88899999999999999865555556678889999999999999999999999999999742 012589999999
Q ss_pred CCccccCCCChhHHHHHHHHHHHHHHHH
Q 005759 517 VLDEKWRTFPVGEIYFWGKILELRTEVN 544 (678)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~lr~~v~ 544 (678)
+.++.+.+ .++...++.++++|..++
T Consensus 155 ~~~~~~~~--~~~~~~~~~~~~i~~~~~ 180 (180)
T cd07960 155 ELPEEWKD--EELEEKWEKLLALRDEVN 180 (180)
T ss_pred CCcccccC--HHHHHHHHHHHHHHHhhC
Confidence 98877665 677888899988887763
No 40
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.95 E-value=2e-26 Score=225.16 Aligned_cols=174 Identities=23% Similarity=0.417 Sum_probs=139.7
Q ss_pred eChhhhhHHHH-HHHHHHHHHHHHHh--cccCCCCCC-ccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 005759 358 IGPQVLRQMSD-IYRKLRGTLRYLLG--NLHDWRVGN-SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQ 433 (678)
Q Consensus 358 ~s~~~l~~~~~-~~~ki~n~~rf~l~--nl~~~~~~~-~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~ 433 (678)
||++.+++..+ +++||||++||+++ ++.++.+.. ..+...+..+|+|+++++++++++++++|++|+|+.|++.++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 56778888877 99999999999987 555555431 122345788999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeec
Q 005759 434 RFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 513 (678)
Q Consensus 434 ~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~ 513 (678)
+|++. ++++|++.+|+++|+.. ++..+++++.++..+++.++++|+|||||+|||+|++++.. .+...++|+.+
T Consensus 81 ~f~~~-~~~~Y~e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~----~~~~~~si~~~ 154 (183)
T cd07961 81 EFIDE-LTNWYIRRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRE----LGDAPESVHLL 154 (183)
T ss_pred HHHHH-hhhhHhhhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh----cCCCCCceeee
Confidence 99985 77999999999999875 33456778899999999999999999999999999999742 00112589999
Q ss_pred cCCCCccccCCCChhHHHHHHHHHHH
Q 005759 514 KWPVLDEKWRTFPVGEIYFWGKILEL 539 (678)
Q Consensus 514 ~wP~~~~~~~~~~~~~~~~~~~~~~l 539 (678)
+||.+++.+.+ ..+...++.+.++
T Consensus 155 ~wP~~~~~~~~--~~~~~~~~~l~~~ 178 (183)
T cd07961 155 DWPEVDESLID--EELEEAMELVREI 178 (183)
T ss_pred cCCCCcccccC--HHHHHHHHHHHHH
Confidence 99998766554 4455555554443
No 41
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.90 E-value=1.5e-22 Score=191.76 Aligned_cols=153 Identities=30% Similarity=0.498 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHh
Q 005759 402 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA 481 (678)
Q Consensus 402 D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLa 481 (678)
|+|+++++++++++++++|++|+|++|++.+++|+++++||+|++.+||++|++..++. |+ ++.++..+++.++++|+
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~-~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES-RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH-HH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH-HH-HHHHHHHHHHHHhhccC
Confidence 89999999999999999999999999999999998888999999999999998876665 66 89999999999999999
Q ss_pred chhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCce
Q 005759 482 PILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLE 561 (678)
Q Consensus 482 PilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~ 561 (678)
|||||+|||+|++|.... .+..++|+.+.||. ++...+ ... . +...++...+.+.++.+|+.+.++++.+
T Consensus 79 P~~P~~aEeiw~~l~~~~----~~~~~si~~~~~p~-~~~~~~--~~~-~--~~~~~~~~~v~~~i~~~r~~~~i~~~~~ 148 (153)
T PF08264_consen 79 PFMPFIAEEIWQRLKSEK----LGEKSSIFLEKWPE-DPEFID--EEL-E--EEAFEILKEVVQVIRKIRKEKNIKPKEP 148 (153)
T ss_dssp TTSHHHHHHHHHHCTTHH----TTSSSSGGGS------GGGGH--HHH----HHHHHHHHHHHHHHHHHHHCCEESTTCG
T ss_pred CCCcHHHHHHHHHhhhcc----CCCCCeeeeCCCCC-Chhhhc--HHH-H--HHHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 999999999998773210 01247899999997 443211 111 0 2334455667788889999999999999
Q ss_pred eEEEE
Q 005759 562 AKVYL 566 (678)
Q Consensus 562 ~~v~I 566 (678)
.+|+|
T Consensus 149 ~~v~i 153 (153)
T PF08264_consen 149 LKVVI 153 (153)
T ss_dssp EEEEE
T ss_pred CCccC
Confidence 88876
No 42
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.89 E-value=2.9e-24 Score=205.88 Aligned_cols=163 Identities=23% Similarity=0.403 Sum_probs=101.6
Q ss_pred cceEEEEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCc
Q 005759 71 SRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNV 150 (678)
Q Consensus 71 ~~~~~v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~ 150 (678)
|....+.|++... +..+.|+||||+||+|.++|+++|++..+ +.- .+++..+.+|
T Consensus 7 S~G~~i~F~i~~~-------------~~~i~vFTTrpdTifGvtfials~~H~lv--~~l----------~~~~~~l~~f 61 (185)
T PF13603_consen 7 SEGAEIDFKIKGS-------------NEKIEVFTTRPDTIFGVTFIALSPEHPLV--KKL----------AENNPELQEF 61 (185)
T ss_dssp EEEEEEEEEBTTS-------------SCEEEEEES-GGGGGG--EEEEETTSCHH--HHC----------TTTHHHHHHH
T ss_pred cccEEEEEEecCC-------------CCEEEEEECCcchhhCceEEEECCCCHHH--Hhh----------hhhhhhHHHH
Confidence 3456788998653 24789999999999999999999999733 100 1122222223
Q ss_pred ccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHH
Q 005759 151 LKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQED 230 (678)
Q Consensus 151 ~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D 230 (678)
++.... ........ -..+..|- +.|+++.||++++++|||+ ++||.+++|||+||++|||+.+|
T Consensus 62 i~~~~~---------~~~~~~~~-----~~~~k~Gv-~tg~~aihP~t~~~iPI~v-a~yVl~~yGtgAVmgvPahD~rD 125 (185)
T PF13603_consen 62 IEKCKK---------IKNSERNK-----DFKEKEGV-FTGLYAIHPLTGKKIPIYV-ANYVLMDYGTGAVMGVPAHDERD 125 (185)
T ss_dssp HHHHHT---------S-HHHHHH-----CSSS--EE-EEEEEEE-TTTS-EEEEEE-ETTS-TTSTTSEEEE-CCC-HHH
T ss_pred HHHHhc---------CCHhHhhh-----hccccccC-cCCCEEECCCCCCCccEEE-ECceeecCCcceEEEcCCCCHHH
Confidence 222100 00000000 01123344 5689999999999999988 99999999999999999999999
Q ss_pred HHHHHHcCCCcccccCC----------------CCccccccCccCCceecccchHHHHHHHH
Q 005759 231 YVTSLKYGLPILSPVDD----------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLD 276 (678)
Q Consensus 231 ~~~~~~~~l~~~~~vd~----------------~G~~~~~~~~~~G~~v~~~~~~~ii~~L~ 276 (678)
|++|++||||+..+|.. +|.+. +.++|.||.. ++|+++|++.|+
T Consensus 126 ~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~~f~Gl~~-~eA~~~I~~~Le 185 (185)
T PF13603_consen 126 FEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSGEFNGLSS-KEAREKIIKKLE 185 (185)
T ss_dssp HHHHHHHT------EEBSSSS---STTSS---S--EE--SSGGGTTSBH-HHHHHHHHHHHH
T ss_pred HHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCCCCCCCCH-HHHHHHHHHHhC
Confidence 99999999998766532 25554 4579999999 699999999885
No 43
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.77 E-value=1.1e-17 Score=155.05 Aligned_cols=135 Identities=25% Similarity=0.508 Sum_probs=110.4
Q ss_pred eChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 005759 358 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 437 (678)
Q Consensus 358 ~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~ 437 (678)
|+++.+.++.++++|+||+.+|+.++...+.+... +.......|+++++.++.+++++.++|++|+|++|++.+++++.
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~ 79 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEE-DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFW 79 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCcccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 57788889999999999999998664333222100 22345678999999999999999999999999999999999997
Q ss_pred HhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 005759 438 VDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 495 (678)
Q Consensus 438 ~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l 495 (678)
.+++|+|++..+||.. ..+..+..+...++.++++.++++|+|||||+||++|+.|
T Consensus 80 ~~~~N~Yi~~~~pW~~--~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 80 NDFCDWYLELVKPRLY--GEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHhHHHHHHhhHHHc--CCChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 5689999999999543 2333345668888999999999999999999999999865
No 44
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.74 E-value=8.5e-19 Score=190.17 Aligned_cols=87 Identities=26% Similarity=0.457 Sum_probs=72.3
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccc-eEE----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSR-SIY---- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~-~~~---- 75 (678)
+++|++||+++||+++|+|+||.|.+.++++|.+|+++|+||++.+||+|||.|+|+||++||- + .|.. ..+
T Consensus 93 ~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~evc--~-~cg~~~~~~~~~ 169 (382)
T cd00817 93 REQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVC--S-RSGDVIEPLLKP 169 (382)
T ss_pred HHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchhc--c-cCCCeEEEEecC
Confidence 4689999999999999999999999999999999999999999999999999999999999984 2 2222 222
Q ss_pred -EEEEeeeCCCCCccc
Q 005759 76 -AVFRMVSAPPSTSGL 90 (678)
Q Consensus 76 -v~f~l~~~~~~~~~~ 90 (678)
.+|+++.+.+.+++.
T Consensus 170 qwf~~l~~~~~~l~~~ 185 (382)
T cd00817 170 QWFVKVKDLAKKALEA 185 (382)
T ss_pred eeEEehHHHHHHHHHH
Confidence 257777665554433
No 45
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.69 E-value=4.7e-16 Score=140.24 Aligned_cols=116 Identities=21% Similarity=0.348 Sum_probs=93.6
Q ss_pred eChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHH
Q 005759 358 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII-QRFI 436 (678)
Q Consensus 358 ~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i-~~f~ 436 (678)
|+.+.+.+..++++++++.+....+ +..+ .+.+...|+|+++++++++++++++|++|+|++|++.+ ++|.
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~---~~~~-----~~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~ 72 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE---TEGE-----LEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQ 72 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---ccCC-----ccccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566777777888888777654221 1111 12456799999999999999999999999999999997 7775
Q ss_pred HHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 005759 437 IVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 495 (678)
Q Consensus 437 ~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l 495 (678)
+.+|+|++..||+ ..++++.++++.++++|+||+||+|||+|+.+
T Consensus 73 --~~~~~Y~~~~~~~------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 73 --NDLDWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred --HHHHHHHHHhCcc------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 3799999999983 23568999999999999999999999999864
No 46
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.67 E-value=3.9e-16 Score=143.18 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=81.8
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHH
Q 005759 398 LPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIV 477 (678)
Q Consensus 398 ~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~ 477 (678)
+...|+|+++++++++++++++|++|+|++|++.+++|+ +++|+|++..||+.+....+..+++.+..++.++++.++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~ 111 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILA 111 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998 479999999999444322122334556677888999999
Q ss_pred HHHhchhhHHHHHHHHhC
Q 005759 478 RVIAPILPHLAEDVWQNL 495 (678)
Q Consensus 478 ~lLaPilP~~aEEiw~~l 495 (678)
++|+|||||+|||+|+.|
T Consensus 112 ~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 112 ILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhcCCCChHHHHHHHhC
Confidence 999999999999999865
No 47
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.60 E-value=1.3e-14 Score=130.60 Aligned_cols=117 Identities=19% Similarity=0.278 Sum_probs=95.3
Q ss_pred eChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 005759 358 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 437 (678)
Q Consensus 358 ~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~ 437 (678)
|+++.++++.++++|++|++++..+.. .|.. +.+.+...|+|++++++++++++.++|++|+|++|++.+++|++
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~---~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~ 75 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL---AAPA--AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVN 75 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc---cccc--cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 567788999999999999987643221 1110 01245678999999999999999999999999999999999995
Q ss_pred HhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 005759 438 VDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 495 (678)
Q Consensus 438 ~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l 495 (678)
..|.|++..+| .+.++.++++.++++|+|||||+|||+|++|
T Consensus 76 --~~n~~~~~~~p--------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 76 --ALYKYKKKDAQ--------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred --HHHHhhccccc--------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 48888875444 4568999999999999999999999999865
No 48
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.7e-14 Score=146.94 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=119.5
Q ss_pred CCCchhhhHHhhhc-CCCCceeeChhhhh--HHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHH
Q 005759 337 GYGADVLRLWVSSV-DYTGDVMIGPQVLR--QMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIV 413 (678)
Q Consensus 337 ~yGaD~lRl~la~~-~~~~D~~~s~~~l~--~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~ 413 (678)
..++|++|||+++. +.++|..|||+.+. ..+++++.++|++.++++.+..... +.+|.-.+..-|+-+++.++.+.
T Consensus 361 gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~-g~Vp~~~~~~~~~~~~~dv~~~~ 439 (567)
T KOG1247|consen 361 GIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYN-GVVPEMELTSGDKKLLEDVNELL 439 (567)
T ss_pred CCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhC-CcccceeecCChHHHHHHHHHHH
Confidence 56799999999875 55789999988774 4688888888887766654432211 23333344555999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHH-HHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 005759 414 KNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRR-SCQTVLSAHLLSIVRVIAPILPHLAEDVW 492 (678)
Q Consensus 414 ~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~-~~~~~l~~~l~~l~~lLaPilP~~aEEiw 492 (678)
.+..++||.-+.++|++.+|+... .+|.|++..++ |+....+.+|. .+..+-..++..+..||+|+||.++.+|.
T Consensus 440 ~~y~~~me~vklr~~l~~~m~is~--~GNqylQ~~~~--~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~ 515 (567)
T KOG1247|consen 440 AKYVAAMEKVKLREALKTAMEISR--RGNQYLQENTD--NKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEIL 515 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHhcccc--cchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHH
Confidence 999999999999999999998874 69999999885 44333333332 33344567888899999999999999999
Q ss_pred HhCCC
Q 005759 493 QNLPF 497 (678)
Q Consensus 493 ~~l~~ 497 (678)
.+++.
T Consensus 516 kqlnl 520 (567)
T KOG1247|consen 516 KQLNL 520 (567)
T ss_pred HHhCC
Confidence 99875
No 49
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.56 E-value=3.4e-17 Score=177.45 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=55.8
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccc
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 64 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Eve 64 (678)
|+.|+++||++| ++.+|+|+.|.++++++|.+|+++|+||++.++++||++|++.|+|.+|+
T Consensus 75 ~~~~~~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~ 136 (391)
T PF09334_consen 75 KELLEALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE 136 (391)
T ss_dssp HHHHHHTT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET
T ss_pred HHHHHHcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee
Confidence 468999999998 89999999999999999999999999999999999999999999999985
No 50
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.35 E-value=1.3e-11 Score=110.62 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=92.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh
Q 005759 361 QVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDL 440 (678)
Q Consensus 361 ~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l 440 (678)
+.++++.++.+++||+++++.+...+..+.. +.......|+|++++++.++++++++|++|+|++|++.+++|++.
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~-- 77 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKW--DNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNE-- 77 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc--ChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Confidence 4567788899999999999766554432210 011235679999999999999999999999999999999999964
Q ss_pred hhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchh
Q 005759 441 SNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPIL 484 (678)
Q Consensus 441 ~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPil 484 (678)
.|+|++..|||.|.. .....+..++..++..++++|+|||
T Consensus 78 ~n~y~~~~~pw~~~~----~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 78 LNWYLDELKPALQTE----ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred ccHHHHHhhHHHcCc----hhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 499999999977754 1234566789999999999999996
No 51
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.35 E-value=1.4e-13 Score=146.25 Aligned_cols=79 Identities=23% Similarity=0.237 Sum_probs=65.0
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++++++||+.+| .+++|+++.|...++++|.+|+++|+||++..+++|||.|+|+|+ |.. + .. -.+|++
T Consensus 76 ~~~l~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--e~~--~---~~--~~ff~l 144 (319)
T cd00814 76 KDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--EWR--E---EE--HYFFRL 144 (319)
T ss_pred HHHHHHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee--EEE--e---ee--eEEEEh
Confidence 468999999776 889999999999999999999999999999999999999999999 221 1 12 245788
Q ss_pred eeCCCCCccc
Q 005759 81 VSAPPSTSGL 90 (678)
Q Consensus 81 ~~~~~~~~~~ 90 (678)
.++++.+.+.
T Consensus 145 ~~~~~~l~~~ 154 (319)
T cd00814 145 SKFQDRLLEW 154 (319)
T ss_pred HHHHHHHHHH
Confidence 8776655433
No 52
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.31 E-value=1.7e-11 Score=136.23 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccC
Q 005759 315 GFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSIS 394 (678)
Q Consensus 315 ~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~ 394 (678)
+|+++..+.+. |..++++||+|++|||++++.+.+|++|+++.+....+.+++++|+++++..
T Consensus 266 KMSKS~GN~i~-----~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~------------ 328 (463)
T PRK00260 266 KMSKSLGNFFT-----IRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYNALAETAL------------ 328 (463)
T ss_pred cccCcCCCCCC-----HHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHHHHHHhhh------------
Confidence 45555444332 4446678999999999999899999999999999999999999999998741
Q ss_pred CCCCCHhHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhhhhhHHHh
Q 005759 395 YDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYFDV 447 (678)
Q Consensus 395 ~~~~~~~D~~il~~l~~~~~~v~~~~e-~~~f~~a~~~i~~f~~~~l~n~Y~~~ 447 (678)
...|+|++++++.+++++.++|+ +|++++|+..+++|+. ..|.|++.
T Consensus 329 ----~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~--~~n~~~~~ 376 (463)
T PRK00260 329 ----GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAR--EINRALET 376 (463)
T ss_pred ----ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHhhc
Confidence 12578999999999999999995 8999999999999985 36788754
No 53
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.23 E-value=2.4e-10 Score=131.04 Aligned_cols=126 Identities=12% Similarity=0.096 Sum_probs=100.1
Q ss_pred ccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 005759 311 ASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG 390 (678)
Q Consensus 311 i~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~ 390 (678)
++-.+|.+++.+.+. |..++.+||+|++|||+++..+.+|++|+++.+....+..++++|.+..+.+.+.+....
T Consensus 311 i~G~KMSKSLGNfIt-----p~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~ 385 (651)
T PTZ00399 311 IKGLKMSKSLKNFIT-----IRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELT 385 (651)
T ss_pred eccchhhhcCCCccc-----HHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 444577777666554 555777899999999999889999999999999888888888888887766544332111
Q ss_pred CccCCCCCCHhHHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhhhhhHHH
Q 005759 391 NSISYDDLPMIDQYALFQLENIVKNIRESY-ESYQFFKIFQIIQRFIIVDLSNFYFD 446 (678)
Q Consensus 391 ~~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~a~~~i~~f~~~~l~n~Y~~ 446 (678)
....+...|+|++..+..+...+.++| ++|+++.|+..+++|+. .+|.|++
T Consensus 386 ---~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~--~~N~yi~ 437 (651)
T PTZ00399 386 ---SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLIS--ATNTYLN 437 (651)
T ss_pred ---ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHHh
Confidence 112345789999999999999999999 77999999999999995 5899996
No 54
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.22 E-value=4.7e-12 Score=135.34 Aligned_cols=50 Identities=50% Similarity=1.004 Sum_probs=48.7
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceec
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHW 50 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~w 50 (678)
+++|++||++.||+++|+|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 94 ~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~ 143 (338)
T cd00818 94 EEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW 143 (338)
T ss_pred HHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee
Confidence 36899999999999999999999999999999999999999999999999
No 55
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.42 E-value=1.8e-07 Score=99.19 Aligned_cols=51 Identities=31% Similarity=0.612 Sum_probs=49.7
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceecc
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWS 51 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wc 51 (678)
+++|++||+++||+++++|++|+|.+.++++|.+|+++|+||++..+|+||
T Consensus 76 ~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~ 126 (314)
T cd00812 76 KEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC 126 (314)
T ss_pred HHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee
Confidence 468999999999999999999999999999999999999999999999999
No 56
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=98.39 E-value=1.9e-06 Score=97.48 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=75.9
Q ss_pred CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHH------HH--HHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHH
Q 005759 334 EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSD------IY--RKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYA 405 (678)
Q Consensus 334 ~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~------~~--~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~i 405 (678)
+.+..|.|++||++++....+|+.|+++.+..... .| .++.+.++-.-. .+..+. +..-..+.|+|+
T Consensus 353 ~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~--~~~~~~---~~~l~~~~e~~L 427 (507)
T PRK01611 353 IAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAE--AGIDLL---LALLTEEEEKEL 427 (507)
T ss_pred hhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhc--cCcccc---ccccCCHHHHHH
Confidence 55689999999999888889999999987654311 11 133333322110 011100 011115789999
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHH
Q 005759 406 LFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYF 445 (678)
Q Consensus 406 l~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~ 445 (678)
+.++..+...+.+++++|+++.+++.+++|+. .+++||=
T Consensus 428 l~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~-~f~~fY~ 466 (507)
T PRK01611 428 IKKLAEFPEVVESAAEELEPHRIANYLYELAG-AFHSFYN 466 (507)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999999985 6999993
No 57
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=98.29 E-value=1.9e-06 Score=95.92 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCCCCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHH
Q 005759 331 PPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLE 410 (678)
Q Consensus 331 P~~~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~ 410 (678)
|..++++||+|++|||+++..+.++++|+++.+..+.+.+++|+|+++++...... . ... .... + ....
T Consensus 276 ~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~-~--~~~-~~~~---~----~~~~ 344 (465)
T TIGR00435 276 VRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYKALRVLDTTLAY-S--GNQ-SLNK---F----PDEK 344 (465)
T ss_pred HHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc-c--ccc-cccc---c----hhHH
Confidence 44455679999999999998999999999999999999999999999987543221 0 000 0000 0 1123
Q ss_pred HHHHHHHHHHH-hcccHHHHHHHHHHHHH
Q 005759 411 NIVKNIRESYE-SYQFFKIFQIIQRFIIV 438 (678)
Q Consensus 411 ~~~~~v~~~~e-~~~f~~a~~~i~~f~~~ 438 (678)
.+.+.+.++|+ ++++..|+..+++++..
T Consensus 345 ~~~~~f~~al~dDlnt~~a~~~l~~~~~~ 373 (465)
T TIGR00435 345 EFEARFVEAMDDDLNTANALAVLFELAKS 373 (465)
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHH
Confidence 44566777776 69999999999999853
No 58
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=98.16 E-value=1e-07 Score=63.58 Aligned_cols=30 Identities=47% Similarity=1.076 Sum_probs=22.5
Q ss_pred CCCCCCCcccccCCCCCCCCCCCChhhHHH
Q 005759 636 GSKCERCWNYSTQVGSFVEHPTLCSRCYEV 665 (678)
Q Consensus 636 ~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v 665 (678)
|.||||||++..+++.+..+..+|+||.+|
T Consensus 1 G~~C~rC~~~~~~~~~~~r~~~~C~rCq~v 30 (30)
T PF06827_consen 1 GEKCPRCWNYIEDIGINGRSTYLCPRCQKV 30 (30)
T ss_dssp TSB-TTT--BBEEEEETTEEEEE-TTTCCH
T ss_pred CCcCccCCCcceEeEecCCCCeECcCCcCC
Confidence 689999999999988877888999999764
No 59
>PLN02946 cysteine-tRNA ligase
Probab=98.14 E-value=9.6e-06 Score=90.99 Aligned_cols=107 Identities=12% Similarity=0.075 Sum_probs=76.0
Q ss_pred CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHH
Q 005759 334 EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIV 413 (678)
Q Consensus 334 ~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~ 413 (678)
++++||+|++|||+++..+.++++|+++.+....+.+.++.++++.+...+..-. ... .... .+.-+...+..+.
T Consensus 337 ll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~--~~~--~~~~-~~~~~~~~~~~~~ 411 (557)
T PLN02946 337 VIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHD--STF--EKDS-VPPDTLNCINKFH 411 (557)
T ss_pred HHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccc--cccc-cchhhHHHHHHHH
Confidence 5567999999999999999999999999999988888888888776643332100 000 0000 1111223455667
Q ss_pred HHHHHHHH-hcccHHHHHHHHHHHHHhhhhhHHHh
Q 005759 414 KNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYFDV 447 (678)
Q Consensus 414 ~~v~~~~e-~~~f~~a~~~i~~f~~~~l~n~Y~~~ 447 (678)
..+.++|+ +++...|+..+++++.. .|.+++.
T Consensus 412 ~~f~~Al~DDlntp~Al~~l~~~vk~--~N~~~~~ 444 (557)
T PLN02946 412 DEFVTSMSDDLHTPVALAALSEPLKT--INDLLHT 444 (557)
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHH--HHHHhhh
Confidence 78888887 69999999999999954 7777754
No 60
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=98.11 E-value=2.3e-06 Score=90.84 Aligned_cols=48 Identities=40% Similarity=0.839 Sum_probs=46.6
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcce
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPV 48 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV 48 (678)
+++|++||+++||+++|+|++|.|...++++|.+|+++|+||++.++|
T Consensus 89 ~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v 136 (312)
T cd00668 89 KEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV 136 (312)
T ss_pred HHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee
Confidence 478999999999999999999999999999999999999999999999
No 61
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.11 E-value=2.2e-05 Score=87.21 Aligned_cols=104 Identities=10% Similarity=0.107 Sum_probs=68.5
Q ss_pred CCCC-CCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCC-CCCC-HhHHHHHHHHH
Q 005759 334 EAPG-YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISY-DDLP-MIDQYALFQLE 410 (678)
Q Consensus 334 ~~~~-yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~-~~~~-~~D~~il~~l~ 410 (678)
++.+ |++|++|||+++..+.++++|+++.+.+..+.+.+|.+++..+........+...... .... ..+.-....+.
T Consensus 293 ll~~g~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (490)
T PRK14536 293 LQEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESE 372 (490)
T ss_pred HHhcCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHH
Confidence 3444 9999999999999999999999999999999999998877655321111000000000 0000 00000112345
Q ss_pred HHHHHHHHHHH-hcccHHHHHHHHHHHH
Q 005759 411 NIVKNIRESYE-SYQFFKIFQIIQRFII 437 (678)
Q Consensus 411 ~~~~~v~~~~e-~~~f~~a~~~i~~f~~ 437 (678)
.+...+.++|+ +++...|+..+++++.
T Consensus 373 ~~~~~f~~al~dDlntp~Al~~l~~~~~ 400 (490)
T PRK14536 373 LLLTDFRAALEDDFSTPKALSELQKLVK 400 (490)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 56678888887 6999999999999884
No 62
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.10 E-value=1.6e-05 Score=89.92 Aligned_cols=102 Identities=9% Similarity=0.119 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 005759 314 EGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSI 393 (678)
Q Consensus 314 ~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~ 393 (678)
.+|.+++.+.+. |..++++||+|++|||++++.|.++++|+++.+.++...+++++++++-+.. .. .
T Consensus 507 eKMSKSLGN~it-----~~dlLe~ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~----~~--~-- 573 (699)
T PRK14535 507 EKMSKSLGNFFT-----IREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPA----AE--F-- 573 (699)
T ss_pred CccCCCCCCcCC-----HHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhh----cc--c--
Confidence 355555444322 4446678999999999999999999999999999999999999887764320 00 0
Q ss_pred CCCCCCHhHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHH
Q 005759 394 SYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIV 438 (678)
Q Consensus 394 ~~~~~~~~D~~il~~l~~~~~~v~~~~e-~~~f~~a~~~i~~f~~~ 438 (678)
. . ...+..+.+.+.++|+ ++++..|+..+++++..
T Consensus 574 ---~---~----~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~ 609 (699)
T PRK14535 574 ---M---L----SENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGE 609 (699)
T ss_pred ---h---h----hhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 0 0 1234456677788887 69999999999998853
No 63
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=97.99 E-value=1.1e-05 Score=92.28 Aligned_cols=113 Identities=10% Similarity=0.057 Sum_probs=83.5
Q ss_pred CCCCCCchhhhHHhhhcCCCCceeeChhhhhH-HHHHHHHHHHHHHHHHhcccCCCCCCc----cCCCCCCHhHHHHHHH
Q 005759 334 EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQ-MSDIYRKLRGTLRYLLGNLHDWRVGNS----ISYDDLPMIDQYALFQ 408 (678)
Q Consensus 334 ~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~-~~~~~~ki~n~~rf~l~nl~~~~~~~~----~~~~~~~~~D~~il~~ 408 (678)
+.+.+|+|++||++++....+|++|+++.+.. .++....|.++..++.+.+.+...... .+...+.+.++.++..
T Consensus 409 ~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~ 488 (566)
T TIGR00456 409 VADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKL 488 (566)
T ss_pred HHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHH
Confidence 56689999999999987789999999986533 234455666666555554443321110 0112235668889999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhh
Q 005759 409 LENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA 448 (678)
Q Consensus 409 l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~ 448 (678)
+..+...+.+++++++++.+++.+++++. ..|.|++..
T Consensus 489 l~~~~~~v~~a~~~~~p~~~~~~l~~La~--~~N~yy~~~ 526 (566)
T TIGR00456 489 LLQFPDVLEEAAEELEPHVLTNYLYELAS--LFSSFYKAC 526 (566)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHH--HHHHHHhcC
Confidence 99999999999999999999999999984 589999876
No 64
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=97.66 E-value=0.00067 Score=75.16 Aligned_cols=96 Identities=11% Similarity=0.164 Sum_probs=65.4
Q ss_pred CCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHH
Q 005759 337 GYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNI 416 (678)
Q Consensus 337 ~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v 416 (678)
.|+++++|||+++..+.++++|+++.+.+....++++++.++.+...+..... ....... .. ........+...+
T Consensus 297 ~~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~---~~~~~~~~~~~~f 371 (481)
T PRK14534 297 GFSPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDL-NLLNKDL-EN---IEFSLEKEYYDSF 371 (481)
T ss_pred CCChhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-ccccccc-cc---chhhhHHHHHHHH
Confidence 48899999999999999999999999999999999999887755333321100 0000000 00 0001122344677
Q ss_pred HHHHH-hcccHHHHHHHHHHHH
Q 005759 417 RESYE-SYQFFKIFQIIQRFII 437 (678)
Q Consensus 417 ~~~~e-~~~f~~a~~~i~~f~~ 437 (678)
.++|+ +++...|+..+++++.
T Consensus 372 ~~Al~DDlNtp~Al~~l~~~~k 393 (481)
T PRK14534 372 LEKIAFDLNIPQGLALLWDIIK 393 (481)
T ss_pred HHHHhhcCChHHHHHHHHHHHH
Confidence 77887 6999999999999885
No 65
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.03 E-value=0.00068 Score=74.02 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=54.1
Q ss_pred cchHHHHHHHHhcCceeeeecccccc-----------ccccCCCCCeEEcccCcccccchHHHHHHHHHhhc--CcccCC
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYEHKY-----------PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ--VKWVPP 332 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~h~y-----------p~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~--v~~~P~ 332 (678)
+.-..++..|.++|++...+.. .-| =.|||||+|++++.++|||++++++++.+++.+++ +.|+|+
T Consensus 118 ~~v~~~f~~L~~~G~iy~~~~~-~~yc~~~~t~l~~~evc~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~ 196 (382)
T cd00817 118 RAVQEAFVRLYEKGLIYRDNRL-VNWCPKLRTAISDIEVCSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPE 196 (382)
T ss_pred HHHHHHHHHHHHCCCEEeeeeE-EeecCCcCCCCCcchhcccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEECh
Confidence 3456778889999998765422 101 24899999999999999999999999999999987 888886
Q ss_pred C
Q 005759 333 Q 333 (678)
Q Consensus 333 ~ 333 (678)
.
T Consensus 197 ~ 197 (382)
T cd00817 197 R 197 (382)
T ss_pred H
Confidence 4
No 66
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=97.01 E-value=0.00077 Score=76.69 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=52.0
Q ss_pred chHHHHHHHHhcCceeeeecc------cccc----------ccccCCCCCeEEcccCcccccchHHHHHHHHHhhc-Ccc
Q 005759 267 GNVAVVKYLDEQMSLIMEEPY------EHKY----------PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ-VKW 329 (678)
Q Consensus 267 ~~~~ii~~L~~~g~l~~~~~~------~h~y----------p~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~-v~~ 329 (678)
.-..++..|.++|.+...+.- ...+ |||||||.|+++|.++|||++++.+++.+.+.+++ +.|
T Consensus 101 ~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~ 180 (511)
T PRK11893 101 AVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDF 180 (511)
T ss_pred HHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCc
Confidence 456788899999987764321 1123 89999999999999999999999999999998875 444
Q ss_pred -cCCC
Q 005759 330 -VPPQ 333 (678)
Q Consensus 330 -~P~~ 333 (678)
.|+.
T Consensus 181 ~~p~~ 185 (511)
T PRK11893 181 IQPAS 185 (511)
T ss_pred cCCHH
Confidence 3543
No 67
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=96.73 E-value=0.0016 Score=70.88 Aligned_cols=95 Identities=12% Similarity=0.159 Sum_probs=68.7
Q ss_pred hHHHHHHHHHhhcCcccCCCCCCC-CCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 005759 314 EGFRQAAMDAIGQVKWVPPQEAPG-YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNS 392 (678)
Q Consensus 314 ~~~~~~~~~~i~~v~~~P~~~~~~-yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~ 392 (678)
.+|.+++.+.+. |..+.+. |++|++|||++++.|.++++||++.++++.+.++++++++... . .
T Consensus 287 ~KMSKSlGN~i~-----~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~----~------~ 351 (411)
T TIGR03447 287 EKMSKSLGNLVF-----VSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLAEAEARLARWRAALAAT----D------A 351 (411)
T ss_pred CCccCcCCCCCC-----HHHHHhcCCCcccEEEEEecCCCCCCCccCHHHHHHHHHHHHHHHHHHhhc----c------c
Confidence 355555444332 3334443 7888999999999999999999999999999999998877521 0 0
Q ss_pred cCCCCCCHhHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHH
Q 005759 393 ISYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFII 437 (678)
Q Consensus 393 ~~~~~~~~~D~~il~~l~~~~~~v~~~~e-~~~f~~a~~~i~~f~~ 437 (678)
. .+..+...+.++|+ ++++..|+..+++++.
T Consensus 352 ------~--------~~~~~~~~~~~al~dDln~p~a~~~l~~~~~ 383 (411)
T TIGR03447 352 ------P--------DATDLIARLRQHLANDLDTPAALAAVDNWAA 383 (411)
T ss_pred ------c--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 0 12234456667776 6999999999998884
No 68
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=96.43 E-value=0.0072 Score=65.39 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhcCcccCCCCCCCCCch--hhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 005759 315 GFRQAAMDAIGQVKWVPPQEAPGYGAD--VLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNS 392 (678)
Q Consensus 315 ~~~~~~~~~i~~v~~~P~~~~~~yGaD--~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~ 392 (678)
+|.+++.+.+. |..+ .++|+| ++|||++++.+.++++|+++.++.+.+.+++++|+++.. .
T Consensus 261 KMSKSlGN~i~-----~~el-l~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~----~------- 323 (384)
T PRK12418 261 KMSKSRGNLVF-----VSRL-RAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAALP----A------- 323 (384)
T ss_pred cccCcCCCcCC-----HHHH-HhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhcc----c-------
Confidence 55555444332 3323 246666 899999999999999999999999999999999876431 0
Q ss_pred cCCCCCCHhHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhhhhhHHHh
Q 005759 393 ISYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYFDV 447 (678)
Q Consensus 393 ~~~~~~~~~D~~il~~l~~~~~~v~~~~e-~~~f~~a~~~i~~f~~~~l~n~Y~~~ 447 (678)
. . .+.++.+.+.++|+ ++++..|+..+++++.. .|.|...
T Consensus 324 ----~-~--------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~--~n~~~~~ 364 (384)
T PRK12418 324 ----G-P--------DAADVVARVRAALADDLDTPGALAAVDGWATD--ALEGGGD 364 (384)
T ss_pred ----c-c--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH--HHhccCC
Confidence 0 0 22344677888887 59999999999999954 7777644
No 69
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=96.25 E-value=0.004 Score=66.15 Aligned_cols=53 Identities=26% Similarity=0.408 Sum_probs=40.9
Q ss_pred cchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHHHHHHHhhcCcccCCC
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v~~~P~~ 333 (678)
+.-..+++.|.++|.+..... | .+.++|||++++++++++++.++...|.|+.
T Consensus 114 ~~v~~~f~~L~~~G~iY~~~~-------------~--v~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~ 166 (312)
T cd00668 114 KAVELIFSRLYEKGLIYRGTH-------------P--VRITEQWFFDMPKFKEKLLKALRRGKIVPEH 166 (312)
T ss_pred HHHHHHHHHHHHCCCEEeecc-------------e--eEeeeeEEEEcHHHHHHHHHHHhcCCcCChH
Confidence 345678888999998754321 1 1789999999999999999999877777765
No 70
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.026 Score=61.76 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 005759 314 EGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSI 393 (678)
Q Consensus 314 ~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~ 393 (678)
++|++++.+.+- +. .++++|++.+|||+++++-|.+.++||++.++.+...+++|.|+++.+.....+..
T Consensus 267 eKMSKSLGNfit----i~-d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~----- 336 (464)
T COG0215 267 EKMSKSLGNFIT----VR-DLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGDAE----- 336 (464)
T ss_pred cCcccccCCeeE----HH-HHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhccccc-----
Confidence 456665544321 11 14567999999999999999999999999999999999999999987663322211
Q ss_pred CCCCCCHhHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHH
Q 005759 394 SYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIV 438 (678)
Q Consensus 394 ~~~~~~~~D~~il~~l~~~~~~v~~~~e-~~~f~~a~~~i~~f~~~ 438 (678)
.. .+.+...++.++|+ ++++..|++.+.+++..
T Consensus 337 ----~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~ 370 (464)
T COG0215 337 ----LA--------DLKEFEARFREALDDDFNTPKALAVLFELAKE 370 (464)
T ss_pred ----cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 00 34456666777886 79999999999998854
No 71
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.031 Score=60.66 Aligned_cols=110 Identities=11% Similarity=0.171 Sum_probs=88.4
Q ss_pred CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHH
Q 005759 334 EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIV 413 (678)
Q Consensus 334 ~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~ 413 (678)
++++|.++.||++++...+.+.+++++..+..+..+...+.|++.-+......- .+++.+...+..++..+....
T Consensus 319 ~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~-----~~~~~~~~~e~~l~~~~~~t~ 393 (586)
T KOG2007|consen 319 ALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGA-----KPFEKLSEKEAELLEDFGKTQ 393 (586)
T ss_pred HHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhhccChHHHHHHHhhhhHH
Confidence 456999999999999999999999999988888777777877765443332221 114567788999999999999
Q ss_pred HHHHHHH-HhcccHHHHHHHHHHHHHhhhhhHHHhhhc
Q 005759 414 KNIRESY-ESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 450 (678)
Q Consensus 414 ~~v~~~~-e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~ 450 (678)
..|..++ ++++-..+++.+.+++. .+|.|+...+.
T Consensus 394 ~~vh~al~d~~dT~~v~~~~~~lvs--~~N~~i~~~~~ 429 (586)
T KOG2007|consen 394 TAVHAALCDNFDTPRVMEAIRELVS--QGNAYIRESGE 429 (586)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHh--hhhHHHHHhcc
Confidence 9887766 58999999999999984 69999988763
No 72
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=96.15 E-value=0.0058 Score=71.56 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=48.6
Q ss_pred chHHHHHHHHhcCceeeeec---c--------cccc----ccccCCCCCeEEcccCcccccchHHHHHHHHHhhc
Q 005759 267 GNVAVVKYLDEQMSLIMEEP---Y--------EHKY----PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 326 (678)
Q Consensus 267 ~~~~ii~~L~~~g~l~~~~~---~--------~h~y----p~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~ 326 (678)
.-..+++.|.++|.+...+. | .-++ |+||+||.|++++.++|||++++++++++.+++++
T Consensus 104 ~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~ 178 (648)
T PRK12267 104 VVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEE 178 (648)
T ss_pred HHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhh
Confidence 45678899999998775421 1 1222 89999999999999999999999999999998864
No 73
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=95.93 E-value=0.0064 Score=65.27 Aligned_cols=59 Identities=32% Similarity=0.542 Sum_probs=48.3
Q ss_pred cchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHHHHHHHhhcCcccCCC
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v~~~P~~ 333 (678)
+.-..+++.|.++|.+... .+|..| |+++|.++|||++++++++.+++.+++++|+|+.
T Consensus 119 ~~v~~~f~~L~~~G~iY~~-----~~~v~~----~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~ 177 (338)
T cd00818 119 ESVWWVFKQLHEKGLLYRG-----YKVVPW----PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEW 177 (338)
T ss_pred HHHHHHHHHHHHCCCEecc-----CCeeee----EEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHH
Confidence 3455677888899987644 234446 9999999999999999999999999988888864
No 74
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=95.43 E-value=0.099 Score=60.05 Aligned_cols=104 Identities=8% Similarity=0.041 Sum_probs=75.3
Q ss_pred CCCchhhhHHhhhcCCCCceeeChhhhhH-HHH-------HHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHH
Q 005759 337 GYGADVLRLWVSSVDYTGDVMIGPQVLRQ-MSD-------IYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQ 408 (678)
Q Consensus 337 ~yGaD~lRl~la~~~~~~D~~~s~~~l~~-~~~-------~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~ 408 (678)
.-|.|++||+..+.+..+++.|+++.+.. .++ .+-++.+++|-.- . ++. .....-..+.++-++..
T Consensus 413 ~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~--~-~~~---~~~~~l~~~~E~~Ll~~ 486 (562)
T PRK12451 413 QVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKES--V-EFE---TCTFALKDDYSWSVVKL 486 (562)
T ss_pred HhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcC--C-Ccc---ccccCCCCHHHHHHHHH
Confidence 47899999999999999999999987422 111 2336666665431 1 111 01111125667788999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhh
Q 005759 409 LENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA 448 (678)
Q Consensus 409 l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~ 448 (678)
+..+...+.+++++++++.+++.+++++. ..|.|++..
T Consensus 487 L~~~~~~v~~a~e~~ep~~~~~yl~~LA~--~fN~fy~~~ 524 (562)
T PRK12451 487 LNKFPQVIEAAFNKNEPSVISKYVLDVAQ--SFNKYYGNV 524 (562)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHhC
Confidence 99999999999999999999999999985 478888764
No 75
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=95.07 E-value=0.49 Score=44.67 Aligned_cols=107 Identities=9% Similarity=0.042 Sum_probs=72.6
Q ss_pred CCCchhhhHHhhhcCCCCceeeChhhhhH--------HHHHHHHHHHHHHHHHhcccCCCCCCccCCCCC-CHhHHHHHH
Q 005759 337 GYGADVLRLWVSSVDYTGDVMIGPQVLRQ--------MSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDL-PMIDQYALF 407 (678)
Q Consensus 337 ~yGaD~lRl~la~~~~~~D~~~s~~~l~~--------~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~-~~~D~~il~ 407 (678)
+.|.|++||.+.+.+..+++.|+++.+.. +...+.++.|+++-... .......+....+ .+.++-++.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~---~~~~~~~~~~~ll~~~~E~~L~~ 78 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGE---TIEAEADADLSLLPEPDERDLIL 78 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCC---cCccccccchhhcCCHHHHHHHH
Confidence 56899999999998888888898876432 13345677777654210 0000001111112 345777888
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhh
Q 005759 408 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA 448 (678)
Q Consensus 408 ~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~ 448 (678)
.+..+.+.+.+++.+.+++.++..+.++.. .-+.|++..
T Consensus 79 ~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~--~~~~ffd~v 117 (156)
T cd07956 79 LLAKFPEVVKNAAETLEPHTIATYLFDLAH--AFSKFYNAC 117 (156)
T ss_pred HHHHhHHHHHHHHHHcCcHHHHHHHHHHHH--HHHHHHhcC
Confidence 888888889999999999999999999885 355666654
No 76
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.89 E-value=0.0049 Score=72.12 Aligned_cols=105 Identities=18% Similarity=0.124 Sum_probs=76.9
Q ss_pred eEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEE
Q 005759 100 LAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVI 179 (678)
Q Consensus 100 ~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i 179 (678)
....|-+|+|+.+-|..||+|+..|.+..... +.+. +++.+...++..+ ...+++
T Consensus 208 ~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~-----------------------~~~~-~~~~~vfttr~dt-~~gvt~ 262 (814)
T COG0495 208 DKLATLWPETVKGMQRNWIGPSEGYEVAFVVD-----------------------GEEE-IVSIEVFTTRPDT-LFGVTY 262 (814)
T ss_pred hhhccCCchhHHHHHHcCcCCCCCeEEEEecC-----------------------Cccc-ceeeeeeeccCcc-ccCeEE
Confidence 44556699999999999999999998765421 0001 2233333322222 225788
Q ss_pred EEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHH
Q 005759 180 KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSL 235 (678)
Q Consensus 180 ~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~ 235 (678)
+...+|..|.|..+.+|.. + ..++||....|||.|+.+|+|.+.|+.+..
T Consensus 263 ~~~a~~h~lv~~~~~~~~~-----~-~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g 312 (814)
T COG0495 263 VVLAPEHPLVGKLVTNPQT-----P-LVAEFVDECKGTGVVESVPAHAEKDGVFLG 312 (814)
T ss_pred EEEeCCchHHHHHhcCccc-----h-hHHHHHHHhcCCCceeeeeccCCCcceecc
Confidence 8899999999998888865 2 458999999999999999999999987654
No 77
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.033 Score=59.01 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=55.1
Q ss_pred hcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEE
Q 005759 7 YGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY 75 (678)
Q Consensus 7 lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~ 75 (678)
++|++| .+=+|+.|......|.+|.+|+++|+.-...-.+.||..|++.||+--|+ |.|..|.|
T Consensus 97 f~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~ve---g~cp~C~y 160 (567)
T KOG1247|consen 97 FKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVE---GKCPFCGY 160 (567)
T ss_pred hccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhh---ccCCCCCC
Confidence 455555 77899999999999999999999999999999999999999999998775 35655554
No 78
>PLN02563 aminoacyl-tRNA ligase
Probab=91.75 E-value=0.19 Score=60.98 Aligned_cols=67 Identities=13% Similarity=0.211 Sum_probs=54.0
Q ss_pred cchHHHHHHHHhcCceeeeeccc--------------cccccccCCCCCeEEcccCcccccchHHHHHHHHHhhcCcccC
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYE--------------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 331 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~--------------h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v~~~P 331 (678)
...+.++..|.++|++...+... -.+++||||+.+++.+.+.|||++++++++++++.++...| |
T Consensus 212 ~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~w-p 290 (963)
T PLN02563 212 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDW-P 290 (963)
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCC-C
Confidence 34567888899999987765431 12478999999999999999999999999999999987765 5
Q ss_pred CC
Q 005759 332 PQ 333 (678)
Q Consensus 332 ~~ 333 (678)
+.
T Consensus 291 ~~ 292 (963)
T PLN02563 291 ES 292 (963)
T ss_pred HH
Confidence 43
No 79
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.63 E-value=0.24 Score=56.29 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=32.8
Q ss_pred ccccCCCCCeEEcccCcccccchHHHHHHHHHhhc
Q 005759 292 PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 326 (678)
Q Consensus 292 p~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~ 326 (678)
|+||.||..+++|.+++||++++++.+.+++++++
T Consensus 173 p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~ 207 (558)
T COG0143 173 PVCVISGATPEVREEEHYFFRLSKFQDKLLEWYES 207 (558)
T ss_pred CeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHh
Confidence 88999999999999999999999999999999874
No 80
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=90.59 E-value=0.31 Score=51.91 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=45.8
Q ss_pred hHHHHHHHHhcCceeeeeccccccccccCCCCCe-EEcccCcccccchHHHHHHHHHhhcC
Q 005759 268 NVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPT-IFRATEQWFASVEGFRQAAMDAIGQV 327 (678)
Q Consensus 268 ~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pv-i~r~t~QWFi~~~~~~~~~~~~i~~v 327 (678)
-..+++.|.++|.+...+ +.-++|-.|++.+ +++.++|||++++++++.+++.+++.
T Consensus 101 v~~i~~~L~ekG~iY~~~---~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~ 158 (319)
T cd00814 101 VQEFFKKLYENGYIYEGE---YEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKN 158 (319)
T ss_pred HHHHHHHHHHCCCEEeee---eeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhC
Confidence 457889999999876442 3345688888766 89999999999999999999988753
No 81
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=89.92 E-value=0.21 Score=58.87 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=32.3
Q ss_pred ccccCCCCCeEEcccCcccccchHHHHHHHHHhhc
Q 005759 292 PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 326 (678)
Q Consensus 292 p~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~ 326 (678)
|+|++|+.|++++.++|||++++++++.+++.+++
T Consensus 170 ~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~ 204 (673)
T PRK00133 170 PKSAISGATPVLKESEHFFFKLPRFEEFLKEWITR 204 (673)
T ss_pred CccccCCCcceEEecceEEEEHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999888753
No 82
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=89.66 E-value=0.3 Score=58.78 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=53.3
Q ss_pred cchHHHHHHHHhcCceeeeeccc------------c---ccccccCCCCCeEEcccCcccccchHHHHHHHHHhhcCccc
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYE------------H---KYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWV 330 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~------------h---~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v~~~ 330 (678)
+....++..|.++|++...+... + ..++||||+.+++.+..+|||++++++++++++.++.....
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~w 209 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHW 209 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccc
Confidence 45667778899999877654321 1 12789999999999999999999999999999988876655
Q ss_pred CCC
Q 005759 331 PPQ 333 (678)
Q Consensus 331 P~~ 333 (678)
|+.
T Consensus 210 p~~ 212 (842)
T TIGR00396 210 PES 212 (842)
T ss_pred cHH
Confidence 654
No 83
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=89.58 E-value=0.38 Score=52.27 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=42.1
Q ss_pred hHHhhhcc-cccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCc----ceeccCCC
Q 005759 2 ASFKRYGV-WADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKK----PVHWSPSS 54 (678)
Q Consensus 2 ~~~~~lGi-~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~----pV~wcp~~ 54 (678)
+.|++||| +.| .+.+|+++ ...++.++.+|.++|++|.... -||++.+.
T Consensus 85 ~d~~~Lni~~~~--~~~raTe~--i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 138 (384)
T PRK12418 85 EDMEALRVLPPR--DYVGAVES--IPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA 138 (384)
T ss_pred HHHHHhCCCCCC--ccccCCCC--HHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc
Confidence 57899997 565 88999986 8999999999999999999887 68887765
No 84
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.39 E-value=7.3 Score=44.81 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=74.9
Q ss_pred CCCCchhhhHHhhhcCCCCceeeChhhhhHH--------HHHHHHHHHHHHHHHhcccCCCCCCccCCCCCC-HhHHHHH
Q 005759 336 PGYGADVLRLWVSSVDYTGDVMIGPQVLRQM--------SDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLP-MIDQYAL 406 (678)
Q Consensus 336 ~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~--------~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~-~~D~~il 406 (678)
+.-|.|++||++++....+++.|+++.+..- .=.+-++.+++|-.-..-..+. .... ..+. ..++.++
T Consensus 421 ~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~~~~~~--~~~~-~~l~~~~E~~L~ 497 (577)
T COG0018 421 EVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGEDELDLS--TEAD-ALLTELEERELV 497 (577)
T ss_pred HHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhccccccccc--cccc-hhccChHHHHHH
Confidence 4567999999999999999999999866432 1123466666654321100110 0000 1222 2367899
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHH
Q 005759 407 FQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 446 (678)
Q Consensus 407 ~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~ 446 (678)
.+|.++..-+.++.+.++.+....-++++.. .|.+||=.
T Consensus 498 ~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~-~Fn~fY~~ 536 (577)
T COG0018 498 KKLLEFPEVLEEAAEELEPHRLANYLYDLAG-SFNSFYNA 536 (577)
T ss_pred HHHHHhHHHHHHHHHhcCchHHHHHHHHHHH-HHHHHHhh
Confidence 9999999999999999999999999999986 48888854
No 85
>PLN02610 probable methionyl-tRNA synthetase
Probab=89.20 E-value=0.28 Score=58.50 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=35.2
Q ss_pred ccccccccCCCCCeEEcccCcccccchHHHHHHHHHhhc
Q 005759 288 EHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 326 (678)
Q Consensus 288 ~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~ 326 (678)
.+..|+|++||.|+++|.++|||++++++++.+.++++.
T Consensus 184 eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~ 222 (801)
T PLN02610 184 ELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINE 222 (801)
T ss_pred hhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHh
Confidence 345688999999999999999999999999999999874
No 86
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=89.00 E-value=0.44 Score=47.56 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=40.6
Q ss_pred hHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCC
Q 005759 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPS 53 (678)
Q Consensus 2 ~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~ 53 (678)
+.+++||+++| .+++|+++ ...++.++.+|.++|++|...-.++.|+.
T Consensus 76 ~~~~~L~i~~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~ 123 (212)
T cd00671 76 ETYGRLDVRFD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLT 123 (212)
T ss_pred HHHHHhCCcCc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEech
Confidence 67899999988 67777765 88899999999999999998777766653
No 87
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=88.46 E-value=0.53 Score=51.52 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=40.7
Q ss_pred hHHhhhccc-ccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCc----ceeccCCC
Q 005759 2 ASFKRYGVW-ADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKK----PVHWSPSS 54 (678)
Q Consensus 2 ~~~~~lGi~-~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~----pV~wcp~~ 54 (678)
+.|++||+. .| .+++|+++ ...++.++.+|+++|++|...- -||++.+.
T Consensus 112 ~d~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 165 (411)
T TIGR03447 112 EDMEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA 165 (411)
T ss_pred HHHHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc
Confidence 678999986 55 88899988 6899999999999999998764 47776654
No 88
>PLN02286 arginine-tRNA ligase
Probab=87.57 E-value=9.1 Score=44.24 Aligned_cols=138 Identities=5% Similarity=-0.018 Sum_probs=86.2
Q ss_pred CCCCchhhhHHhhhcCCCCceeeChhhhhHH--------HHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHH
Q 005759 336 PGYGADVLRLWVSSVDYTGDVMIGPQVLRQM--------SDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALF 407 (678)
Q Consensus 336 ~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~--------~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~ 407 (678)
...|.|++||+.++.+..+|+.|+++.+... .=.+-++.+++|-.-.....+.. ..+..-..+.++-++.
T Consensus 423 ~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~--~~~~~l~~~~E~~L~~ 500 (576)
T PLN02286 423 EAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKK--TGKIVLDHPDERALGL 500 (576)
T ss_pred HHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccc--cccccCCCHHHHHHHH
Confidence 3678999999999999999999999874321 11234566655542110000100 0011112567788999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHH
Q 005759 408 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVI 480 (678)
Q Consensus 408 ~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lL 480 (678)
.|.++...+.++.++++.+..+.-+++++. .+..+|=+. +.+ .. .+...|-........+|+..+.||
T Consensus 501 ~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~-~F~~fY~~~--~Vl-~~-~~~~aRL~L~~a~~~vL~~gL~LL 568 (576)
T PLN02286 501 HLLQFPEVVEEACTDLLPNRLCEYLYNLSE-KFTKFYSNC--KVN-GS-EEETSRLLLCEATAIVMRKCFHLL 568 (576)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHH-HHHHHHhcC--ccC-CC-CchhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999986 488887421 322 11 112233333333455555555555
No 89
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=84.00 E-value=1 Score=54.21 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=49.9
Q ss_pred cchHHHHHHHHhcCceeeeeccc--------------cccccccCCCCCeEEcccCcccccchHHHHHHHHHhhcC
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYE--------------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQV 327 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~--------------h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v 327 (678)
+....++..|.++|++....... -..++||||+.|++.+.++|||++++++++++++.++.+
T Consensus 133 ~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~ 208 (805)
T PRK00390 133 KWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKL 208 (805)
T ss_pred HHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhh
Confidence 45677888899999887654321 113789999999999999999999999999998887654
No 90
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=82.56 E-value=1.2 Score=47.33 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=41.2
Q ss_pred cchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccc--hHHHHHHHHHhhcCcccCC
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASV--EGFRQAAMDAIGQVKWVPP 332 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~--~~~~~~~~~~i~~v~~~P~ 332 (678)
+.-+.++..|.++|.+...+. ...+| +.++|||+++ +++++.+.+.++.+.+.|+
T Consensus 101 ~~v~~~f~~L~~~G~iy~~~~---~v~~~---------~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~ 157 (314)
T cd00812 101 KFTQWLFLKLYEKGLAYKKEA---PVNWC---------KLLDQWFLKYSETEWKEKLLKDLEKLDGWPE 157 (314)
T ss_pred HHHHHHHHHHHHCCCEEecCc---eeeee---------CccceEEEEcCcHHHHHHHHHHHHhcCcCCH
Confidence 345567789999998765432 22233 8899999999 9999999999987665564
No 91
>PLN02224 methionine-tRNA ligase
Probab=80.38 E-value=2.2 Score=49.46 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=47.4
Q ss_pred cchHHHHHHHHhcCceeeeecccccc----------------ccccCCCCCeEEcccCcccccchHHHHHHHHHhh
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYEHKY----------------PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG 325 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~h~y----------------p~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~ 325 (678)
+.-+.++..|.++|.+...+. ..-| +.|..|+.|++++.+++||++++++++.+.+.++
T Consensus 168 ~~vq~~f~~L~~~G~Iy~~~~-~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~ 242 (616)
T PLN02224 168 AIVKEFYARVFANGDIYRADY-EGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILA 242 (616)
T ss_pred HHHHHHHHHHHHCCCEEEeee-eeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHH
Confidence 456678889999998765432 1111 5688899999999999999999999999999986
No 92
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=75.85 E-value=3.3 Score=45.39 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=41.9
Q ss_pred cchHHHHHHHHhcCceeeeecccccc-----------------cccc----------CCCC-----------------Ce
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYEHKY-----------------PYDW----------RTKK-----------------PT 301 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~h~y-----------------p~~w----------r~~~-----------------pv 301 (678)
+.-+.+++.|.++|.+...+. +.-| |+|- .||. ++
T Consensus 98 ~~v~~i~~~L~~~G~I~~~~~-~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~ 176 (391)
T PF09334_consen 98 EFVQEIFKRLYDNGYIYKREY-EGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLEPEELINPVCKICGSPP 176 (391)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE-EEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEECCCSECEEETTTS-B-
T ss_pred HHHHHHHHHHHhcCceeeccc-ceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcccccccCCccccccccC
Confidence 456788899999998775432 2222 4332 3444 45
Q ss_pred EEcccCcccccchHHHHHHHHHhhcC
Q 005759 302 IFRATEQWFASVEGFRQAAMDAIGQV 327 (678)
Q Consensus 302 i~r~t~QWFi~~~~~~~~~~~~i~~v 327 (678)
++|.++|||++++++++.+.+.++..
T Consensus 177 ~~r~e~~~ff~L~~~~~~L~~~l~~~ 202 (391)
T PF09334_consen 177 EVREEENYFFKLSKFRDQLREWLESN 202 (391)
T ss_dssp EEEEEEEEEE-GGGGHHHHHHHHHHS
T ss_pred ccccceEEEEehHHhHHHHHHHHhcC
Confidence 58899999999999999999988743
No 93
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.60 E-value=0.44 Score=47.61 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhhcCCCCceeeC
Q 005759 315 GFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIG 359 (678)
Q Consensus 315 ~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~~~~~~D~~~s 359 (678)
+|+++..+.+. |..++++||+|++|||+++..+.++++|+
T Consensus 174 KMSKs~Gn~v~-----~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 174 KMSKSLGNFIT-----VRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred chhhcCCCccC-----HHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 45555443332 44466789999999999998888888775
No 94
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=71.48 E-value=2.2 Score=48.53 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=47.7
Q ss_pred chHHHHHHHHhcCceeeeeccc-------------c--ccccccCCCCCeEEcccCcccccchHHHHHHHHHhhcC
Q 005759 267 GNVAVVKYLDEQMSLIMEEPYE-------------H--KYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQV 327 (678)
Q Consensus 267 ~~~~ii~~L~~~g~l~~~~~~~-------------h--~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v 327 (678)
-.+-|+-.|-++|+....+... | .-..+||+|.+|+-....|||++.+++.+++++.++..
T Consensus 159 WTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L 234 (876)
T KOG0435|consen 159 WTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETL 234 (876)
T ss_pred HHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 4677778888888776554321 1 12567999999999999999999999999999988743
No 95
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=61.47 E-value=69 Score=28.14 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=38.9
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhh
Q 005759 399 PMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA 448 (678)
Q Consensus 399 ~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~ 448 (678)
.+.++-++..+..+...+.++++.++++.+++.+++++.. +.+ |++..
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~-f~~-fy~~~ 79 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQA-FNS-FYDNV 79 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHH-HHH-HHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHH-HHhhc
Confidence 4567788999999999999999999999999999999853 554 55544
No 96
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=56.86 E-value=8.8 Score=40.16 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=34.0
Q ss_pred hHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCC-cceeccCCC
Q 005759 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGK-KPVHWSPSS 54 (678)
Q Consensus 2 ~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~-~pV~wcp~~ 54 (678)
+.+++||+.-.. ..+---+|...++.+-.+|.++|+.|... .-||++.+.
T Consensus 84 ~dm~~Lnv~~p~---~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~ 134 (300)
T PF01406_consen 84 EDMKALNVLPPD---HYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK 134 (300)
T ss_dssp HHHHHTT----S---EEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG
T ss_pred HHHHHcCCCCCc---cccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc
Confidence 467888887542 22223457778889999999999999998 888888753
No 97
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=55.83 E-value=4.5 Score=31.05 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=20.4
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCChhhHHHhcc
Q 005759 634 AEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAV 668 (678)
Q Consensus 634 ~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~ 668 (678)
+...||++|-.||-. +.|+.|-.....
T Consensus 3 ~~~rkC~~cg~YTLk--------e~Cp~CG~~t~~ 29 (59)
T COG2260 3 SLIRKCPKCGRYTLK--------EKCPVCGGDTKV 29 (59)
T ss_pred chhhcCcCCCceeec--------ccCCCCCCcccc
Confidence 345799999999873 589999665543
No 98
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=52.93 E-value=49 Score=36.87 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=27.8
Q ss_pred hHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeee
Q 005759 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 43 (678)
Q Consensus 2 ~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr 43 (678)
+.++.||+.+| ..|.-.+ ..........+|.++|++|+
T Consensus 59 e~L~wLGI~~D--e~y~QSe--r~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 59 EDLKWLGINWD--RTFRQSD--RFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred HHHHHcCCCCC--ccccHHH--HHHHHHHHHHHHHHCCCEEE
Confidence 57889998755 5554332 23467888899999999994
No 99
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=48.91 E-value=18 Score=39.08 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=30.1
Q ss_pred CCCCCCCCCchhhhHHhhhcC-CCCceeeChhhhhHHHHHHHHHHH
Q 005759 331 PPQEAPGYGADVLRLWVSSVD-YTGDVMIGPQVLRQMSDIYRKLRG 375 (678)
Q Consensus 331 P~~~~~~yGaD~lRl~la~~~-~~~D~~~s~~~l~~~~~~~~ki~n 375 (678)
|..+++.+|+|+||||+++.+ ...|++|+.++.+. .+-+.++.|
T Consensus 286 ~~dll~~~~~dalR~~~l~~~~~~~~i~Fd~~~~~~-~dey~r~~~ 330 (353)
T cd00674 286 PSDWLEVAPPEVLRYLYARRKNPEKHIGFDLDILRL-YDEYDRLER 330 (353)
T ss_pred HHHHHHHhChHHHHHHHHhCCCCCCCCCcChhHHHH-HHHHHHHHH
Confidence 333556799999999998766 77899999864443 344444433
No 100
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=48.17 E-value=5.1 Score=45.57 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=31.7
Q ss_pred CCCCCCCCCchhhhHHhh-hcCCCCceeeChhhhhHHHHHHHHHHHH
Q 005759 331 PPQEAPGYGADVLRLWVS-SVDYTGDVMIGPQVLRQMSDIYRKLRGT 376 (678)
Q Consensus 331 P~~~~~~yGaD~lRl~la-~~~~~~D~~~s~~~l~~~~~~~~ki~n~ 376 (678)
|...+..||+|++|||++ +..+.+|++|+. +....+-+.++.+.
T Consensus 291 ~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~dey~rl~~~ 335 (510)
T PRK00750 291 IEDWLEYAPPESLRLFMFARPKPAKRLDFDV--IPKLVDEYDRFERK 335 (510)
T ss_pred HHHHHHHCCHHHHHHHHHhCCCCCCCCcccH--HHHHHHHHHHHHHH
Confidence 434556799999998876 567889999998 55555556555543
No 101
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=42.67 E-value=26 Score=39.80 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=34.4
Q ss_pred CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHH
Q 005759 334 EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTL 377 (678)
Q Consensus 334 ~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~ 377 (678)
+++.+|+|++||++++..+.++++|+.+.+ +..+-+.++.+.+
T Consensus 288 ll~~~~pdalR~~~l~~~~~~~ldFd~~~l-~~~dey~r~~~~~ 330 (515)
T TIGR00467 288 VLEVYTPEITRFLFARTKPEFHISFDLDVI-KLYEDYDKFERFY 330 (515)
T ss_pred HHHHcCHHHHHHHHhccCCCCCCcCCHHHH-HHHHHHHHHHHHH
Confidence 345799999999998999999999999988 6666666665544
No 102
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=42.31 E-value=4.2 Score=29.30 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=21.0
Q ss_pred CCCCCcccccCCCCCCCCCCCChhhHHHhccCCcc
Q 005759 638 KCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIP 672 (678)
Q Consensus 638 kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~~~~~ 672 (678)
+||.|-.-. .+-+......+|.+|-.||+++.+.
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG~Vl~e~~i~ 35 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCGLVLEENIID 35 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-BBEE-TTBS
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCCCEeeccccc
Confidence 699998744 1222223445999999899876654
No 103
>KOG1779 consensus 40s ribosomal protein S27 [Translation, ribosomal structure and biogenesis]
Probab=42.12 E-value=4.2 Score=33.04 Aligned_cols=28 Identities=32% Similarity=0.732 Sum_probs=20.6
Q ss_pred CCCCCcccccCCCCCCCCCCCChhhHHHh
Q 005759 638 KCERCWNYSTQVGSFVEHPTLCSRCYEVL 666 (678)
Q Consensus 638 kC~RCw~~~~~~~~~~~~~~lC~RC~~v~ 666 (678)
|||+|.+.+. +=++..-.-.|+-|..++
T Consensus 36 kC~gc~~iT~-vfSHaqtvVvc~~c~~il 63 (84)
T KOG1779|consen 36 KCPGCFKITT-VFSHAQTVVVCEGCSTIL 63 (84)
T ss_pred EcCCceEEEE-EeecCceEEEcCCCceEE
Confidence 8999999886 333434445899998876
No 104
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=36.09 E-value=2.4e+02 Score=24.73 Aligned_cols=48 Identities=6% Similarity=0.056 Sum_probs=38.2
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhh
Q 005759 399 PMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA 448 (678)
Q Consensus 399 ~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~ 448 (678)
.+..+-++..+..+...+..++.+.+++.++..+.+++. .-+.|++..
T Consensus 35 ~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~--~~~~fy~~v 82 (122)
T smart00836 35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLAS--AFHSFYNKC 82 (122)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHH--HHHHHHccC
Confidence 355677788888888888999999999999999999885 355666654
No 105
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=35.57 E-value=15 Score=27.64 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=8.2
Q ss_pred CCCCCCccccc
Q 005759 637 SKCERCWNYST 647 (678)
Q Consensus 637 ~kC~RCw~~~~ 647 (678)
.|||||--...
T Consensus 25 ~KCPrCK~vN~ 35 (60)
T COG4416 25 KKCPRCKEVNE 35 (60)
T ss_pred ecCCccceeee
Confidence 59999975543
No 106
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.91 E-value=27 Score=22.17 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=15.3
Q ss_pred CCCCCCcccccCCCCCCCCCCCChhhH
Q 005759 637 SKCERCWNYSTQVGSFVEHPTLCSRCY 663 (678)
Q Consensus 637 ~kC~RCw~~~~~~~~~~~~~~lC~RC~ 663 (678)
..||.|-.-.+ .+...|+.|-
T Consensus 3 ~~Cp~Cg~~~~------~~~~fC~~CG 23 (26)
T PF13248_consen 3 MFCPNCGAEID------PDAKFCPNCG 23 (26)
T ss_pred CCCcccCCcCC------cccccChhhC
Confidence 47999998433 3467999994
No 107
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=33.53 E-value=33 Score=38.37 Aligned_cols=29 Identities=34% Similarity=0.525 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCeeeCCccee
Q 005759 21 DPEYEAAQIEVFGQMSLQGYIYRGKKPVH 49 (678)
Q Consensus 21 d~~y~~~v~~~F~~l~~kGlIyr~~~pV~ 49 (678)
..-|.+.|.+.|.-|+.+|.|||+.||-|
T Consensus 522 arF~~acv~EAfeYLH~k~iIYRDLKPEN 550 (732)
T KOG0614|consen 522 ARFYVACVLEAFEYLHRKGIIYRDLKPEN 550 (732)
T ss_pred hhhhHHHHHHHHHHHHhcCceeccCChhh
Confidence 35688999999999999999999999954
No 108
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=32.24 E-value=17 Score=27.57 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=16.1
Q ss_pred CCCCCCcccccCCCCCCCCCCCChhhHHHh
Q 005759 637 SKCERCWNYSTQVGSFVEHPTLCSRCYEVL 666 (678)
Q Consensus 637 ~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~ 666 (678)
.+|++|+.||-. +-|+.|-...
T Consensus 6 r~c~~~~~YTLk--------~~cp~cG~~T 27 (53)
T PF04135_consen 6 RKCPGCRVYTLK--------DKCPPCGGPT 27 (53)
T ss_dssp EECTTTCEEESS--------SBBTTTSSBS
T ss_pred ccCCCCCcEeCC--------CccCCCCCCC
Confidence 379999999863 4788885543
No 109
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=30.80 E-value=22 Score=37.64 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=25.3
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCChhhHHHhcc
Q 005759 635 EGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAV 668 (678)
Q Consensus 635 ~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~ 668 (678)
.-..|..|+.+.++ ...|-.+|.||....++
T Consensus 108 ~~~~C~~C~~~KP~---RS~HC~~Cn~CV~k~DH 138 (309)
T COG5273 108 TENFCSTCNIYKPP---RSHHCSICNRCVLKFDH 138 (309)
T ss_pred cceeccccccccCC---CCccchhhcchhhccCc
Confidence 34789999999885 34688999999988775
No 110
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.46 E-value=37 Score=20.97 Aligned_cols=20 Identities=20% Similarity=0.617 Sum_probs=14.4
Q ss_pred CCCCCcccccCCCCCCCCCCCChhhH
Q 005759 638 KCERCWNYSTQVGSFVEHPTLCSRCY 663 (678)
Q Consensus 638 kC~RCw~~~~~~~~~~~~~~lC~RC~ 663 (678)
+||+|=+-.+ +....|+.|-
T Consensus 1 ~Cp~CG~~~~------~~~~fC~~CG 20 (23)
T PF13240_consen 1 YCPNCGAEIE------DDAKFCPNCG 20 (23)
T ss_pred CCcccCCCCC------CcCcchhhhC
Confidence 6899987654 3457899983
No 111
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=26.24 E-value=16 Score=25.99 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=12.6
Q ss_pred CCCCCcccccCCCCCCCCCCCChhhHH
Q 005759 638 KCERCWNYSTQVGSFVEHPTLCSRCYE 664 (678)
Q Consensus 638 kC~RCw~~~~~~~~~~~~~~lC~RC~~ 664 (678)
|||||..--..+.-..-.-..|++|..
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G 27 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGG 27 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCe
Confidence 688887633222111111135777743
No 112
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=25.54 E-value=85 Score=24.96 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCeeeCC-cceeccCCCC
Q 005759 26 AAQIEVFGQMSLQGYIYRGK-KPVHWSPSSR 55 (678)
Q Consensus 26 ~~v~~~F~~l~~kGlIyr~~-~pV~wcp~~~ 55 (678)
+.+.+++.+|.++|+|.+.. .|..|...+.
T Consensus 37 ~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~~ 67 (68)
T smart00550 37 KEVNRVLYSLEKKGKVCKQGGTPPLWKLTDK 67 (68)
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCceEeecC
Confidence 46889999999999999865 7788987653
No 113
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.13 E-value=38 Score=21.67 Aligned_cols=20 Identities=20% Similarity=0.650 Sum_probs=14.1
Q ss_pred CCCCCcccccCCCCCCCCCCCChhhH
Q 005759 638 KCERCWNYSTQVGSFVEHPTLCSRCY 663 (678)
Q Consensus 638 kC~RCw~~~~~~~~~~~~~~lC~RC~ 663 (678)
+||.|..-.+. ....|+.|-
T Consensus 2 ~CP~C~~~V~~------~~~~Cp~CG 21 (26)
T PF10571_consen 2 TCPECGAEVPE------SAKFCPHCG 21 (26)
T ss_pred cCCCCcCCchh------hcCcCCCCC
Confidence 69999876553 346888883
No 114
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.06 E-value=1.7e+02 Score=32.13 Aligned_cols=35 Identities=14% Similarity=0.419 Sum_probs=30.7
Q ss_pred ccccCCCCCeEEcccCcccccchHHHHHHHHHhhc
Q 005759 292 PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 326 (678)
Q Consensus 292 p~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~ 326 (678)
++.--+|.||.++..+.+|+.++++++.+.+.+++
T Consensus 185 ~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrk 219 (578)
T KOG0436|consen 185 VVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRK 219 (578)
T ss_pred eeeeccCCceeEecccceeeeHHhhhhHHHHHHhc
Confidence 34456899999999999999999999999999874
No 115
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=24.49 E-value=28 Score=26.44 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=6.9
Q ss_pred CCCCCCccc
Q 005759 637 SKCERCWNY 645 (678)
Q Consensus 637 ~kC~RCw~~ 645 (678)
.+||||=..
T Consensus 18 lrCPRC~~~ 26 (65)
T COG4049 18 LRCPRCGMV 26 (65)
T ss_pred eeCCchhHH
Confidence 689999543
No 116
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=24.38 E-value=76 Score=32.27 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=27.7
Q ss_pred hHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeee
Q 005759 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 43 (678)
Q Consensus 2 ~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr 43 (678)
++++.||+ +|+..|+.++ +-...+....+|.++|++|.
T Consensus 60 ~dL~wLGl--~~d~~~~qS~--r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 60 EDLEWLGV--KWDEVVIASD--RIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHcCC--CCCCccchhc--cHHHHHHHHHHHHHcCCccc
Confidence 57889999 7887766554 33333455678889999997
No 117
>PLN02627 glutamyl-tRNA synthetase
Probab=22.64 E-value=2.9e+02 Score=31.61 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=24.9
Q ss_pred hHHhhhcccccccC---------ccccCChHHHHHHHHHHHHHHHcCCeee
Q 005759 2 ASFKRYGVWADWNN---------PYLTLDPEYEAAQIEVFGQMSLQGYIYR 43 (678)
Q Consensus 2 ~~~~~lGi~~DW~~---------~y~T~d~~y~~~v~~~F~~l~~kGlIyr 43 (678)
+.++-||+ |||. +|+-.+- -..=.....+|.++|.+|+
T Consensus 102 ~~L~WLGl--~wDegp~~gg~~gpy~QSeR--~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 102 RDLKWLGL--DWDEGPDVGGEYGPYRQSER--NAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred HHHHHcCC--CCCcCcccCCCCCCeeeecc--HHHHHHHHHHHHHcCCeee
Confidence 46777886 6775 3555541 2233456678999999995
No 118
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=21.60 E-value=35 Score=32.78 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=23.3
Q ss_pred HHHcCCeeeCCcceeccCCCCccccccc
Q 005759 35 MSLQGYIYRGKKPVHWSPSSRTALAEAE 62 (678)
Q Consensus 35 l~~kGlIyr~~~pV~wcp~~~TaLae~E 62 (678)
|.+++-.+-|+-|+|||-.|+-+|-...
T Consensus 1 ~~kk~~~~~gk~~iyWCe~cNlPl~~~~ 28 (202)
T COG5270 1 MRKKMPVVLGKFPIYWCEKCNLPLLGRR 28 (202)
T ss_pred CCcccceeecccceeehhhCCCcccccc
Confidence 4567788999999999999999986643
No 119
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=21.48 E-value=58 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=20.3
Q ss_pred ccCCCC--ccccccccccCCCcccceEEEEEE
Q 005759 50 WSPSSR--TALAEAELEYPEGHVSRSIYAVFR 79 (678)
Q Consensus 50 wcp~~~--TaLae~Evey~~~~~~~~~~v~f~ 79 (678)
.||.|. +++|++-=.+ ++.++.|..|+
T Consensus 21 ~CPrCG~gvfmA~H~dR~---~CGkCgyTe~~ 49 (51)
T COG1998 21 FCPRCGPGVFMADHKDRW---ACGKCGYTEFK 49 (51)
T ss_pred cCCCCCCcchhhhcCcee---EeccccceEee
Confidence 699999 9999985333 57777776654
No 120
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=21.17 E-value=76 Score=25.24 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCeee-CCcceeccCCCC
Q 005759 25 EAAQIEVFGQMSLQGYIYR-GKKPVHWSPSSR 55 (678)
Q Consensus 25 ~~~v~~~F~~l~~kGlIyr-~~~pV~wcp~~~ 55 (678)
.+-|-.+..+|.++|.|.+ +..|..|+-.++
T Consensus 34 kk~VN~~LY~L~k~g~v~k~~~~PP~W~l~~~ 65 (66)
T PF02295_consen 34 KKEVNRVLYRLEKQGKVCKEGGTPPKWSLTEK 65 (66)
T ss_dssp HHHHHHHHHHHHHTTSEEEECSSSTEEEE-HC
T ss_pred HHHHHHHHHHHHHCCCEeeCCCCCCceEeccC
Confidence 3567889999999999997 468999986554
No 121
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.49 E-value=70 Score=36.94 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=35.5
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeee--CCcceecc
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR--GKKPVHWS 51 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr--~~~pV~wc 51 (678)
|+.+.+||+.+| ..+.-.+--|...+..+...|-++|++|. |...|.|.
T Consensus 246 k~~l~~l~V~fD--~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~ 296 (577)
T COG0018 246 KETLDRLGVKFD--VYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLL 296 (577)
T ss_pred HHHHHHhCcccc--eeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehh
Confidence 457899999998 44444444455578999999999999998 44444443
Done!