Query 005759
Match_columns 678
No_of_seqs 369 out of 2597
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:42:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ffy_A Isoleucyl-tRNA syntheta 100.0 7E-121 2E-125 1078.6 24.5 602 1-668 136-915 (917)
2 1gax_A Valrs, valyl-tRNA synth 100.0 2.1E-94 7.2E-99 845.7 37.0 485 1-599 126-771 (862)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 7.4E-93 2.5E-97 837.6 39.0 496 1-544 131-813 (821)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 6.4E-87 2.2E-91 796.7 41.5 508 1-580 134-877 (967)
5 1wkb_A Leucyl-tRNA synthetase; 100.0 5.2E-77 1.8E-81 703.6 38.5 440 1-496 134-810 (810)
6 2v0c_A Aminoacyl-tRNA syntheta 100.0 1.4E-72 4.7E-77 664.0 17.1 478 1-551 109-835 (878)
7 4arc_A Leucine--tRNA ligase; l 100.0 1.8E-71 6E-76 649.1 20.8 457 1-521 129-813 (880)
8 1wny_A Isoleucyl-tRNA syntheta 100.0 1.3E-41 4.5E-46 329.6 15.6 182 70-290 2-186 (186)
9 3u1f_A Methionyl-tRNA syntheta 100.0 3.1E-40 1.1E-44 374.4 17.0 159 335-498 338-500 (542)
10 1rqg_A Methionyl-tRNA syntheta 100.0 3.8E-37 1.3E-41 357.0 23.4 156 336-498 360-522 (722)
11 3o0a_A Leucyl-tRNA synthetase 100.0 3E-37 1E-41 305.2 1.3 196 71-288 3-218 (219)
12 2wfg_A Cytosolic leucyl-tRNA s 100.0 9.1E-36 3.1E-40 302.6 11.0 191 75-292 5-257 (261)
13 1wka_A Valyl-tRNA synthetase; 100.0 4E-35 1.4E-39 272.6 14.4 140 70-287 3-146 (147)
14 3kfl_A Methionyl-tRNA syntheta 100.0 2.1E-35 7E-40 334.7 5.0 388 1-498 102-516 (564)
15 2ajg_A Leucyl-tRNA synthetase; 100.0 5.1E-35 1.7E-39 285.8 7.1 168 71-284 10-195 (196)
16 2wfd_A Leucyl-tRNA synthetase, 100.0 4.8E-34 1.6E-38 289.0 14.4 180 74-283 8-249 (252)
17 4dlp_A Aminoacyl-tRNA syntheta 100.0 6.7E-35 2.3E-39 329.4 3.0 376 1-498 101-499 (536)
18 3pz6_A Leurs, leucyl-tRNA synt 100.0 4.8E-33 1.6E-37 280.6 12.9 159 97-283 79-303 (311)
19 2x1l_A Methionyl-tRNA syntheta 100.0 4.8E-34 1.6E-38 322.0 -0.7 381 1-498 88-492 (524)
20 3h99_A Methionyl-tRNA syntheta 100.0 4.5E-32 1.6E-36 307.8 13.3 154 336-496 361-520 (560)
21 2csx_A Methionyl-tRNA syntheta 100.0 1.4E-33 4.6E-38 316.3 -2.3 374 1-498 81-469 (497)
22 2d5b_A Methionyl-tRNA syntheta 100.0 7.3E-33 2.5E-37 310.8 -6.9 375 1-498 79-470 (500)
23 3sp1_A Cysteinyl-tRNA syntheta 99.0 2.8E-10 9.6E-15 124.7 6.7 113 311-437 295-413 (501)
24 3c8z_A Cysteinyl-tRNA syntheta 99.0 6.7E-10 2.3E-14 120.8 8.0 101 312-443 288-390 (414)
25 1li5_A Cysrs, cysteinyl-tRNA s 98.9 2.5E-09 8.5E-14 117.6 9.9 95 331-447 277-372 (461)
26 3tqo_A Cysteinyl-tRNA syntheta 98.8 1E-08 3.6E-13 111.7 11.7 93 331-446 280-373 (462)
27 1iq0_A Arginyl-tRNA synthetase 98.6 2.1E-08 7.3E-13 113.7 3.6 112 337-450 436-548 (592)
28 2zue_A Arginyl-tRNA synthetase 98.3 8.4E-08 2.9E-12 109.3 1.5 108 337-448 470-590 (629)
29 3fnr_A Arginyl-tRNA synthetase 98.1 9.5E-06 3.3E-10 88.8 12.1 109 334-446 299-416 (464)
30 2d5b_A Methionyl-tRNA syntheta 96.1 0.0018 6.1E-08 71.9 2.0 61 266-326 102-176 (500)
31 2csx_A Methionyl-tRNA syntheta 94.7 0.013 4.6E-07 64.7 3.1 61 266-326 104-179 (497)
32 2x1l_A Methionyl-tRNA syntheta 94.1 0.033 1.1E-06 62.1 4.7 61 266-326 111-190 (524)
33 4dlp_A Aminoacyl-tRNA syntheta 94.0 0.038 1.3E-06 61.7 4.8 60 267-326 125-202 (536)
34 4arc_A Leucine--tRNA ligase; l 90.3 0.15 5.1E-06 59.9 3.8 62 266-327 154-229 (880)
35 3kfl_A Methionyl-tRNA syntheta 88.5 0.33 1.1E-05 54.4 4.7 60 266-326 125-208 (564)
36 1irx_A Lysyl-tRNA synthetase; 87.8 0.15 5.1E-06 56.6 1.4 43 334-376 293-336 (523)
37 1f7u_A Arginyl-tRNA synthetase 85.0 1.7 5.7E-05 49.0 8.0 102 339-445 454-566 (607)
38 2v0c_A Aminoacyl-tRNA syntheta 82.8 0.87 3E-05 53.6 4.7 63 266-328 134-211 (878)
39 2apo_B Ribosome biogenesis pro 52.4 2.6 8.7E-05 31.8 -0.3 28 633-668 3-30 (60)
40 2cr8_A MDM4 protein; ZF-ranbp 39.8 6.6 0.00023 28.2 0.2 31 635-671 10-40 (53)
41 4ayb_P DNA-directed RNA polyme 37.3 22 0.00076 25.1 2.5 31 637-667 4-35 (48)
42 1irx_A Lysyl-tRNA synthetase; 35.1 9.2 0.00031 42.1 0.5 37 2-42 113-151 (523)
43 2c6a_A Ubiquitin-protein ligas 31.2 12 0.00043 26.2 0.4 34 633-672 10-43 (46)
44 1qbj_A Protein (double-strande 31.1 37 0.0013 27.0 3.3 30 26-55 42-72 (81)
45 1qgp_A Protein (double strande 29.8 40 0.0014 26.4 3.3 27 26-52 46-73 (77)
46 2aus_D NOP10, ribosome biogene 29.5 15 0.00051 27.6 0.6 26 634-667 3-28 (60)
47 1dl6_A Transcription factor II 26.0 11 0.00038 28.0 -0.6 35 637-672 12-46 (58)
48 1z8u_A Alpha-hemoglobin stabil 25.4 2.7E+02 0.0091 22.5 8.0 70 409-484 11-82 (102)
49 1f7u_A Arginyl-tRNA synthetase 21.1 35 0.0012 38.2 1.9 40 2-44 279-318 (607)
No 1
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=7.3e-121 Score=1078.62 Aligned_cols=602 Identities=43% Similarity=0.747 Sum_probs=535.0
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
|+||+|||+++||+|+|+||||.|+++++|+|.+|+++|+||||.+||+|||+|+|+|||+||+|++ +.++++||+|++
T Consensus 136 ~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d-~~~~~~~v~f~~ 214 (917)
T 1ffy_A 136 KKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHD-KRSASIYVAFNV 214 (917)
T ss_dssp HHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEE-EEEEEEECCBCC
T ss_pred HHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhccc-ccCceEEEEEEe
Confidence 4799999999999999999999999999999999999999999999999999999999999999966 889999999998
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+.. +.++ ++.+++||||||||||||+||||||+++|++++.+ ++.++
T Consensus 215 ~~~~----g~~~---~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~-------------------------~~~~i 262 (917)
T 1ffy_A 215 KDDK----GVVD---ADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVN-------------------------GEKYI 262 (917)
T ss_dssp CSST----TGGG---TTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTT-------------------------TTCCC
T ss_pred cccc----cccC---CCCeEEEEeCCcchhhhceEEEECCCCceEEEEeC-------------------------Cceee
Confidence 7531 1111 25789999999999999999999999999977643 45789
Q ss_pred EeccchHHHHHHhCC-ceE--EEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHc
Q 005759 161 VASDLVPTLEAKWGT-KLV--IKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKY 237 (678)
Q Consensus 161 ia~~~~~~l~~~~~~-~~~--i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~ 237 (678)
+++++++.+....+. .++ ++.+++|++|.|+++.||++++++|| +.++||++++|||+||+|||||++||++|++|
T Consensus 263 ~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~pv-i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 341 (917)
T 1ffy_A 263 IAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLV-INGDHVTTDAGTGCVHTAPGHGEDDYIVGQQY 341 (917)
T ss_dssp CCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTTCCSBCC-CCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSS
T ss_pred hHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCCCCCeeeE-EeccccccCCCCceeEeCCCCCHHHHHHHHHc
Confidence 999999999888765 355 78899999999999999999999999 77999999999999999999999999999999
Q ss_pred CCCcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHH
Q 005759 238 GLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFR 317 (678)
Q Consensus 238 ~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~ 317 (678)
|||++++||++|+|+++++.|.|++++ +|++.|++.|++.|.+++.+.++|+||||||||+|+|+|+|+|||++|++++
T Consensus 342 ~L~~~~~vd~~G~~~~~~~~~~G~~v~-~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr 420 (917)
T 1ffy_A 342 ELPVISPIDDKGVFTEEGGQFEGMFYD-KANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVR 420 (917)
T ss_dssp SCCCCCCCCSSSCCCTTCSSCSSSCSS-HHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHH
T ss_pred CCCeeeeECCCceeCCcccccCCcCHH-HHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHH
Confidence 999999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccCCC----------------------------------------------------------------
Q 005759 318 QAAMDAIGQVKWVPPQ---------------------------------------------------------------- 333 (678)
Q Consensus 318 ~~~~~~i~~v~~~P~~---------------------------------------------------------------- 333 (678)
+++++++++++|+|++
T Consensus 421 ~~~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~ 500 (917)
T 1ffy_A 421 QDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREA 500 (917)
T ss_dssp HHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCH
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCH
Confidence 9999888777766543
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 501 ~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk 580 (917)
T 1ffy_A 501 KDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYK 580 (917)
T ss_dssp HHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBS
T ss_pred HHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHHhhCCCccc
Confidence
Q ss_pred ----------------------------CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhccc
Q 005759 334 ----------------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLH 385 (678)
Q Consensus 334 ----------------------------~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~ 385 (678)
++++||||+||||++++++++|++|+++.+++..+++++|+|++||+++|+.
T Consensus 581 ~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~ 660 (917)
T 1ffy_A 581 FLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNIN 660 (917)
T ss_dssp EEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred ceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2248999999999999999999999999999999999999999999999998
Q ss_pred CCCCC-CccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHH
Q 005759 386 DWRVG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRS 464 (678)
Q Consensus 386 ~~~~~-~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~ 464 (678)
+|.+. +.++...+..+|+|+++++++++++++++|++|+|++|++.+++|++++++|+|++.+|||+|+..+++..|++
T Consensus 661 ~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~ 740 (917)
T 1ffy_A 661 DFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRS 740 (917)
T ss_dssp TCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHH
T ss_pred ccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHH
Confidence 87642 22333456789999999999999999999999999999999999998679999999999999998766777889
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHH
Q 005759 465 CQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVN 544 (678)
Q Consensus 465 ~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~ 544 (678)
++++|+.+++.+++||+|||||+|||||++|+.. ..+||+++.||+.++ .+ ..+.+.|+.++++|..++
T Consensus 741 ~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~-------~~~sv~~~~wP~~~~--~~--~~l~~~~~~~~~v~~~v~ 809 (917)
T 1ffy_A 741 MQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV-------KEESVHLADMPKVVE--VD--QALLDKWRTFMNLRDDVN 809 (917)
T ss_dssp HHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC-------SSSSGGGSCCCCCCC--CC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHcccC-------CCCCeEecCCCCCCc--ch--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999742 136999999999875 23 567888999999999999
Q ss_pred HHHHHHhccccCCCCceeEEEEEeCChh-HHHHHHHhhccCCChhhhhhheeeeceEEccCCCCCCccCCCCCCcccccC
Q 005759 545 KVLEVARTGKLIGSSLEAKVYLFTDDAS-LASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEG 623 (678)
Q Consensus 545 ~~ie~~r~~~~i~~~~~~~v~I~~~~~~-~~~~l~~~~~~~~~~~~L~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
+.++.+|+++.|++++++.|+|+++++. ..+.|+.+ ++|+++++||+|++....+. + + +.
T Consensus 810 ~~~~~~R~~~~i~~~l~~~v~i~~~~~~~~~~~l~~~-------~~l~~~~~~s~~~~~~~~~~----~-~----~~--- 870 (917)
T 1ffy_A 810 RALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSF-------DALHQLFIVSQVKVVDKLDD----Q-A----TA--- 870 (917)
T ss_dssp HHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGGC-------SCHHHHTTSSEEEECSCCCT----T-S----EE---
T ss_pred HHHHHHHHhcCCCCCCceEEEEEeCChhhHHHHHhhH-------HHHHHHhcccceEEecCCcc----c-c----cc---
Confidence 9999999999999999999999876543 44544432 47999999999999642110 0 0 11
Q ss_pred CceEE-EEEEeCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhcc
Q 005759 624 KDKVW-IGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAV 668 (678)
Q Consensus 624 ~~~~~-v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~ 668 (678)
.++. |.|.+++++||||||+|+++||.+++|++||+||++||.+
T Consensus 871 -~~~~~~~~~~~~~~kc~rcw~~~~~~~~~~~~~~~c~rc~~~~~~ 915 (917)
T 1ffy_A 871 -YEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVKS 915 (917)
T ss_dssp -ETTEEEEEEECSSEECTTTCCEESCCEEETTEEEECHHHHHHHHT
T ss_pred -cccceEEEEeCCCCCCcccCCCccccccCCCCCCcCHhHHHHHHh
Confidence 1245 8999999999999999999999998999999999999974
No 2
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=2.1e-94 Score=845.70 Aligned_cols=485 Identities=21% Similarity=0.329 Sum_probs=430.3
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEEEEEEe
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~v~f~l 80 (678)
++||+|||+|+||+|+|+||||.|+++++|+|.+|+++||||||.++|+|||.|+|+|||+||+|++ +.++++||+|++
T Consensus 126 ~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e-~~g~~~~v~f~~ 204 (862)
T 1gax_A 126 LKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEP-TPGKLYTLRYEV 204 (862)
T ss_dssp HHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECC-EEEEEEEEECCC
T ss_pred HHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCcccccccccccc-ccceEEEEEEEe
Confidence 4799999999999999999999999999999999999999999999999999999999999999966 889999999998
Q ss_pred eeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEE
Q 005759 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 160 (678)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (678)
.+ +.+++||||||||||||+||||||++..
T Consensus 205 ~~--------------~~~l~v~TTrPeTl~g~~avav~P~~~r------------------------------------ 234 (862)
T 1gax_A 205 EG--------------GGFIEIATVRPETVFADQAIAVHPEDER------------------------------------ 234 (862)
T ss_dssp SS--------------SCCCEEEESCSGGGTTCCCEEECSSCCT------------------------------------
T ss_pred cC--------------CCEEEEEeCCccccccceEEEECCCccH------------------------------------
Confidence 53 1479999999999999999999999730
Q ss_pred EeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCC
Q 005759 161 VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 240 (678)
Q Consensus 161 ia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~ 240 (678)
.++|.|+++.||++++++|| +.++||++++|||+||+|||||++||++|++||||
T Consensus 235 ------------------------y~~l~G~~~~~P~~~~~ipi-i~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~ 289 (862)
T 1gax_A 235 ------------------------YRHLLGKRARIPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLK 289 (862)
T ss_dssp ------------------------TCSCTTCCCBCTTCCCBCCE-EECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCC
T ss_pred ------------------------HHHHcCCEEECCCCCCeeeE-EeccccccCCCCcceEecCCCCchHHHHHHHcCCC
Confidence 01578999999999999999 77999999999999999999999999999999999
Q ss_pred cccccCCCCcccccc--CccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchHHHH
Q 005759 241 ILSPVDDEGKFTEEA--GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 318 (678)
Q Consensus 241 ~~~~vd~~G~~~~~~--~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~ 318 (678)
++++||++|++++++ |.|.|++++ +|++.|++.|++.|++.+.+.+.|+||||||||+|+++++++|||++++++++
T Consensus 290 ~~~~id~~G~~~~~~~~g~~~Gl~~~-~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~ 368 (862)
T 1gax_A 290 PVSVINLEGRMEGERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAE 368 (862)
T ss_dssp CCCSBCTTSBBCSSSSCTTTSSSBSS-HHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHH
T ss_pred ccceeCCCCccccccCCcccCCcCHH-HHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHH
Confidence 999999999999988 899999996 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh--cCcccCCC---------------------------------------------------------------
Q 005759 319 AAMDAIG--QVKWVPPQ--------------------------------------------------------------- 333 (678)
Q Consensus 319 ~~~~~i~--~v~~~P~~--------------------------------------------------------------- 333 (678)
.++++++ +++|+|++
T Consensus 369 ~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r 448 (862)
T 1gax_A 369 EVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKR 448 (862)
T ss_dssp HHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEE
T ss_pred HHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEeccccccccchhhhhcCchheec
Confidence 9998874 34444332
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 449 ~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~K 528 (862)
T 1gax_A 449 DEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQK 528 (862)
T ss_dssp CCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCB
T ss_pred CCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCC
Confidence
Q ss_pred -------------CCCCCCchhhhHHhhh-cCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCC
Q 005759 334 -------------EAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLP 399 (678)
Q Consensus 334 -------------~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~ 399 (678)
++++||||+||||+++ +++++|++|+++.+++..++++++||++||+++|+.++.+. ...+.
T Consensus 529 MSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~----~~~~~ 604 (862)
T 1gax_A 529 MSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK----EDTPT 604 (862)
T ss_dssp CCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC----BCCCC
T ss_pred ccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc----cccCC
Confidence 2248999999999986 58899999999999999999999999999999988776431 13467
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHH
Q 005759 400 MIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRV 479 (678)
Q Consensus 400 ~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~l 479 (678)
..|+|+++++++++++++++|++|+|++|++.+++|+++++||||++.+|||+|++ +++++.+|+++|+.+++|
T Consensus 605 ~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~------~~~~~~~l~~~l~~~~~l 678 (862)
T 1gax_A 605 LADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAG------NAHTLRTLEEVLAVLLKL 678 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT------BHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhcc------HHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998889999999999999864 467889999999999999
Q ss_pred HhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 005759 480 IAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSS 559 (678)
Q Consensus 480 LaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~ 559 (678)
|||||||+|||||+.|+. .+||+.++||+.+ +.+ ..+...++.+++ +.+.++.+|+...|+.+
T Consensus 679 L~P~~P~~aEeiw~~L~~---------~~sv~~~~wP~~~--~~d--~~~~~~~~~~~~----v~~~~r~~r~~~~i~~~ 741 (862)
T 1gax_A 679 LHPMMPFLTSELYQALTG---------KEELALEAWPEPG--GRD--EEAERAFEALKQ----AVTAVRALKAEAGLPPA 741 (862)
T ss_dssp HTTTSHHHHHHHHHHHHC---------CSCGGGSCCCCCC--CCC--HHHHHHHHHHHH----HHHHHHHHHHHHTCCTT
T ss_pred HhhhhhHHHHHHHHhcCC---------CCeEEecCCCCCC--cCC--HHHHHHHHHHHH----HHHHHHHhhhhhcCCCC
Confidence 999999999999999963 2699999999976 233 566666776655 46777888998899988
Q ss_pred ceeEEEEEeCChhHHHHHHHhhccCCChhhhhhheeeece
Q 005759 560 LEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQV 599 (678)
Q Consensus 560 ~~~~v~I~~~~~~~~~~l~~~~~~~~~~~~L~~l~~vs~v 599 (678)
.+..++|. + + . +.++.+ .+.|..+++|++|
T Consensus 742 ~~~~~~v~-~-~-~-~~~~~~------~~~i~~~~~~~~~ 771 (862)
T 1gax_A 742 QEVRVYLE-G-E-T-APVEEN------LEVFRFLSRADLL 771 (862)
T ss_dssp CCEEEEEE-E-S-C-HHHHHT------HHHHHHHHCEEEC
T ss_pred CeeEEEEe-C-h-H-HHHHHH------HHHHHHHhCcccc
Confidence 88887765 3 2 2 445544 2578888888887
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=7.4e-93 Score=837.65 Aligned_cols=496 Identities=29% Similarity=0.519 Sum_probs=432.1
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccc--cCCCcccceEEEEE
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE--YPEGHVSRSIYAVF 78 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Eve--y~~~~~~~~~~v~f 78 (678)
+++|++||+++||+|+|+||||.|+++++|+|.+|+++|+|||+.+||+|||+|+|+|||+||+ |.+ ++++++||+|
T Consensus 131 ~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~-~~~~~~~v~f 209 (821)
T 1ile_A 131 EAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKE-IQDPSVYVRF 209 (821)
T ss_dssp TTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEE-EEEEEEEEEE
T ss_pred HHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCccc-ccCceEEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999994 754 8899999999
Q ss_pred EeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceE
Q 005759 79 RMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVF 158 (678)
Q Consensus 79 ~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (678)
++.+... ....+.+++||||||||||||+||||||+++|+.++.+ ++.
T Consensus 210 ~~~~~~~-------~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~-------------------------~~~ 257 (821)
T 1ile_A 210 PLKEPKK-------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG-------------------------DEA 257 (821)
T ss_dssp EBSSGGG-------GTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEET-------------------------TEE
T ss_pred EecCCcc-------cCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcC-------------------------CcE
Confidence 9964210 00125789999999999999999999999999998864 578
Q ss_pred EEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCC---CCcccEEEccCccccCCCCCceeccCCCCHHHHHHHH
Q 005759 159 IIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVD---NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSL 235 (678)
Q Consensus 159 ~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~---~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~ 235 (678)
||+++++++++..+ .++++++++|++|+|+++.||+. ++.+|| +.++||++++|||+||+|||||++||++|+
T Consensus 258 ~i~a~~~~~~~~~~---~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi-~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~ 333 (821)
T 1ile_A 258 LILEEGLGRKLLGE---GTQVLKTFPGKALEGLPYTPPYPQALEKGYFV-VLADYVSQEDGTGIVHQAPAFGAEDLETAR 333 (821)
T ss_dssp EEEETTHHHHHTCT---TSCEEEEECHHHHTTCBBCCSSCCCCSSCSBE-EECTTCCSSSSCSCEECCTTSCHHHHHHHH
T ss_pred EEehHHHHHHHHhh---CcEEEEEechHHhcCCEEEcCCcccCCCEEEE-EecCcCccCCCCcceEecCCCCHHHHHHHH
Confidence 99999999887653 57899999999999999999995 788999 679999999999999999999999999999
Q ss_pred HcCCCcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEcccCcccccchH
Q 005759 236 KYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEG 315 (678)
Q Consensus 236 ~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~QWFi~~~~ 315 (678)
+||||++++||++|+|+++ + |.|++++ +|++.|++.|++.|.+++.+.|+|+||||||||+|+|+|+++|||+++++
T Consensus 334 ~~~l~~~~~id~~G~~~~~-~-~~G~~~~-~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~ 410 (821)
T 1ile_A 334 VYGLPLLKTVDEEGKLLVE-P-FKGLYFR-EANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTL 410 (821)
T ss_dssp HTTCCCCCCBCTTSBBCSG-G-GTTCBHH-HHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGG
T ss_pred HcCCCcceeECCCCcCccc-C-cCCCCHH-HHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHH
Confidence 9999999999999999988 6 9999996 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcc-------------------------------cC---------------------------C-----
Q 005759 316 FRQAAMDAIGQVKW-------------------------------VP---------------------------P----- 332 (678)
Q Consensus 316 ~~~~~~~~i~~v~~-------------------------------~P---------------------------~----- 332 (678)
+++++++++++++| +| .
T Consensus 411 ~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l 490 (821)
T 1ile_A 411 FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDP 490 (821)
T ss_dssp GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCC
T ss_pred HHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhh
Confidence 99998877654322 12 0
Q ss_pred ----------------------C---------------------------------------------------------
Q 005759 333 ----------------------Q--------------------------------------------------------- 333 (678)
Q Consensus 333 ----------------------~--------------------------------------------------------- 333 (678)
+
T Consensus 491 ~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~ 570 (821)
T 1ile_A 491 HRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLF 570 (821)
T ss_dssp SHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCchhhcccccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhc
Confidence 0
Q ss_pred ----------------------------------CCCCCCchhhhHHhhh-cCCCCceeeChhhhhH-HHHHHHHHHHHH
Q 005759 334 ----------------------------------EAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQ-MSDIYRKLRGTL 377 (678)
Q Consensus 334 ----------------------------------~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~-~~~~~~ki~n~~ 377 (678)
++++||+|+||||+++ +++.+|++|+++.+.+ +.+++++|||++
T Consensus 571 ~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~ 650 (821)
T 1ile_A 571 GSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVY 650 (821)
T ss_dssp SSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHH
T ss_pred CCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHH
Confidence 3358999999999986 5799999999999998 589999999999
Q ss_pred HHHH--hcccCCCC-CCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccC
Q 005759 378 RYLL--GNLHDWRV-GNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYT 454 (678)
Q Consensus 378 rf~l--~nl~~~~~-~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~ 454 (678)
+|+. +++.++.+ ... ....+...|+|+++++++++++++++|++|+|++|++.+++|++++++|+|++.+|+++|+
T Consensus 651 ~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~ 729 (821)
T 1ile_A 651 SFFVTYANLDRPDLKNPP-PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWK 729 (821)
T ss_dssp HHHHHHHHHHCCCTTSCC-CSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHT
T ss_pred HHHHHhhccccCCccccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9864 45555544 211 1234678999999999999999999999999999999999999778999999999999998
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCc-ceeeccCCCCccccCCCChhHHHHH
Q 005759 455 GGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAE-FVFESKWPVLDEKWRTFPVGEIYFW 533 (678)
Q Consensus 455 ~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~-sV~~~~wP~~~~~~~~~~~~~~~~~ 533 (678)
..+ +..|++++++|+++|+.+++||+|||||+|||||++|+... +...+ ||+.+.||+.++.+.+ .++.+.+
T Consensus 730 ~~~-~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~----~~~~~~sv~~~~~P~~~~~~~~--~~~~~~~ 802 (821)
T 1ile_A 730 NED-ALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSV----RLEAKESVHLADWPEADPALAD--EALVAQM 802 (821)
T ss_dssp CTT-TSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTT----STTSCSSGGGSCCCCCCTTTCC--HHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccc----cCCCCCceEeecCCCCCcccCC--HHHHHHH
Confidence 754 23455788999999999999999999999999999997420 00124 9999999998876655 6777788
Q ss_pred HHHHHHHHHHH
Q 005759 534 GKILELRTEVN 544 (678)
Q Consensus 534 ~~~~~lr~~v~ 544 (678)
+.++++++.++
T Consensus 803 ~~~~~~~~~~r 813 (821)
T 1ile_A 803 RAVLKVVDLAR 813 (821)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88877766654
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.4e-87 Score=796.72 Aligned_cols=508 Identities=21% Similarity=0.323 Sum_probs=419.4
Q ss_pred ChHHhhhcccccccCccccCC--hHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCc-ccceEEEE
Q 005759 1 MASFKRYGVWADWNNPYLTLD--PEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGH-VSRSIYAV 77 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d--~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~-~~~~~~v~ 77 (678)
|+||+|||+++||+|+|+||| |.|+++++|+|.+|+++||||||.+||+|||.|+|+|||+||+|+++. .+..++|+
T Consensus 134 ~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~ 213 (967)
T 1wz2_A 134 KETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIK 213 (967)
T ss_dssp HHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEE
T ss_pred HHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEE
Confidence 479999999999999999999 999999999999999999999999999999999999999999986532 24457789
Q ss_pred EEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCce
Q 005759 78 FRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKV 157 (678)
Q Consensus 78 f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (678)
|++.+.. .+.+++||||||||||||+||||||++.|++++.++. ..++
T Consensus 214 f~~~~~~-----------~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~---------------------~~~~ 261 (967)
T 1wz2_A 214 FELRENG-----------EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRK---------------------DKEE 261 (967)
T ss_dssp EECCCSS-----------SCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECS---------------------SCEE
T ss_pred EEecCCC-----------CceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCC---------------------Ccce
Confidence 9985321 1368999999999999999999999999999886410 0137
Q ss_pred EEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHH----
Q 005759 158 FIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT---- 233 (678)
Q Consensus 158 ~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~---- 233 (678)
.+|+++++++++..+ +..++++++++|++|+|++|.||++++++|| ++++||++++|||+||+|||||++||.+
T Consensus 262 ~~i~a~~~~~~~~~~-~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi-~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~ 339 (967)
T 1wz2_A 262 TWIVSKEAAYKLSFQ-DREIEVIEEFKGEKLIGKYVRNPVSGDEVII-LPAEFVDPDNATGVVMSVPAHAPFDHVALEDL 339 (967)
T ss_dssp EEEEEHHHHHHHHHS-SCEEEEEEECCSSTTSSCEEECSSSSCEEEE-EECSSCCSSSTTSCEEECTTSCTTTTTTTSCC
T ss_pred eeehHHHHHHHHHhh-ccCcEEEEEEEchhhcCCEEECCCCCCceEE-EecccccCCCCcccEEeecCCCHHHHHHHHhh
Confidence 899999999988765 3468899999999999999999999999999 7799999999999999999999999985
Q ss_pred ------HHHcCCC--------ccccc-----------------------CC----------------CCccccccCccCC
Q 005759 234 ------SLKYGLP--------ILSPV-----------------------DD----------------EGKFTEEAGKFSG 260 (678)
Q Consensus 234 ------~~~~~l~--------~~~~v-----------------------d~----------------~G~~~~~~~~~~G 260 (678)
+++|||+ ++++| |+ +|+++ .+.|.|
T Consensus 340 ~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~--~g~~~G 417 (967)
T 1wz2_A 340 KRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEG 417 (967)
T ss_dssp SCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC--SSSSCS
T ss_pred ccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe--ccCcCC
Confidence 5788876 56554 22 57776 678999
Q ss_pred ceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEc-ccCcccccch--HHHHHHHHHhhcCc---------
Q 005759 261 LDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFR-ATEQWFASVE--GFRQAAMDAIGQVK--------- 328 (678)
Q Consensus 261 ~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r-~t~QWFi~~~--~~~~~~~~~i~~v~--------- 328 (678)
+++. +|++.|++.|++.|.++....+.| ||+|||||+|+|++ +++|||++++ .+++.+++++++++
T Consensus 418 ~~v~-ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~ 495 (967)
T 1wz2_A 418 KPVQ-EVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQ 495 (967)
T ss_dssp SBHH-HHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHH
T ss_pred cCHH-HHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccch
Confidence 9995 899999999999999986544433 89999999999999 5999999987 36666655443221
Q ss_pred --------------------------------------------------------------------------------
Q 005759 329 -------------------------------------------------------------------------------- 328 (678)
Q Consensus 329 -------------------------------------------------------------------------------- 328 (678)
T Consensus 496 ~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~g~~~~~l~~~~~d~~~~~~~~~g 575 (967)
T 1wz2_A 496 FEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSED 575 (967)
T ss_dssp HHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHTTTSCCCHH
T ss_pred HHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhcCCChHHcCcccceeeccCccccC
Confidence
Q ss_pred -------------------------ccCCC--------------------------------------------------
Q 005759 329 -------------------------WVPPQ-------------------------------------------------- 333 (678)
Q Consensus 329 -------------------------~~P~~-------------------------------------------------- 333 (678)
|+|.+
T Consensus 576 ~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~ 655 (967)
T 1wz2_A 576 KEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSK 655 (967)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTT
T ss_pred ccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccc
Confidence 12322
Q ss_pred --------CCCCCCchhhhHHhh-hcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHH
Q 005759 334 --------EAPGYGADVLRLWVS-SVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQY 404 (678)
Q Consensus 334 --------~~~~yGaD~lRl~la-~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~ 404 (678)
++++||||+||||++ ++++.+|++|+++.+++..+++++++|+++++.++. .+ ....+..+|+|
T Consensus 656 GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~---~~----~~~~~~~~D~~ 728 (967)
T 1wz2_A 656 GNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE---VK----GNVELKDIDRW 728 (967)
T ss_dssp CCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSC---CC----CCCCCCHHHHH
T ss_pred cCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCC---CC----CcccCCHHHHH
Confidence 234899999999996 688999999999999999999999999999987541 11 12345789999
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchh
Q 005759 405 ALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPIL 484 (678)
Q Consensus 405 il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPil 484 (678)
+++++++++++++++|++|+|++|++.++.++++ .+|+|++.+|++ .+++++++|+++|+.+++||||||
T Consensus 729 il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~-~~n~Yi~~~k~~---------~~~~~~~~l~~~l~~l~~LLaP~~ 798 (967)
T 1wz2_A 729 MLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMN-DLRWYLRRTEGR---------DDEAKRYVLRTLADVWVRLMAPFT 798 (967)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHH-HHHHHHHHTTTC---------CCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-HHHHHHHhccch---------hHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999987656654 579999999863 124788899999999999999999
Q ss_pred hHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceeEE
Q 005759 485 PHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKV 564 (678)
Q Consensus 485 P~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r~~~~i~~~~~~~v 564 (678)
||+|||||+.|+.. +||+.+.||+.++.+.+ .++...++.++++++.++++++.++ + +.+.++
T Consensus 799 P~~aEeiw~~L~~~---------~sv~~~~wP~~~~~~~d--~~~~~~~~~~~~~~~~vr~~~~~~~----~--~~p~~~ 861 (967)
T 1wz2_A 799 PHICEELWEKLGGE---------GFVSLAKWPEPVEEWWN--ETIEAEEEFIRSVMEDIKEIIEVAK----I--ENAKRA 861 (967)
T ss_dssp HHHHHHHHHHSSCC---------SCGGGSCCCCCCSSCCC--HHHHHHHHHHHHHHHHHHHHHHTSC----C--CCSBEE
T ss_pred chHHHHHHHhcCCC---------CceeccCCCCCCcccCC--HHHHHHHHHHHHHHHHHHHHHHHhC----C--CCCCeE
Confidence 99999999999742 69999999998876655 6788889999999988887655432 3 234778
Q ss_pred EEEeCChhHHHHHHHh
Q 005759 565 YLFTDDASLASRLREM 580 (678)
Q Consensus 565 ~I~~~~~~~~~~l~~~ 580 (678)
+|++++++..+.++.+
T Consensus 862 ~i~~~~~~~~~~~~~~ 877 (967)
T 1wz2_A 862 YIYTAEDWKWKVAEVV 877 (967)
T ss_dssp EECCCTTTTTTTHHHH
T ss_pred EEEECCHHHHHHHHHH
Confidence 8888776655555544
No 5
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.2e-77 Score=703.64 Aligned_cols=440 Identities=21% Similarity=0.330 Sum_probs=364.5
Q ss_pred ChHHhhhcccccccCccccCC--hHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccce--EEE
Q 005759 1 MASFKRYGVWADWNNPYLTLD--PEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRS--IYA 76 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d--~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~--~~v 76 (678)
+++|++||+++||+++|+||| |.|+++++|+|.+|+++|+|||+.++|+|||+|+|+|||+||+|++ +.+.+ .+|
T Consensus 134 ~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~-~~~~~~~~~v 212 (810)
T 1wkb_A 134 KETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGE-DVPILDYIII 212 (810)
T ss_dssp HHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCS-SCCEEEEEEE
T ss_pred HHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCC-CCccceeEEE
Confidence 479999999999999999999 9999999999999999999999999999999999999999999865 33333 558
Q ss_pred EEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCc
Q 005759 77 VFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKK 156 (678)
Q Consensus 77 ~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (678)
+|++.+.. .+.+++||||||||||||+||||||++.|++++..+. ...
T Consensus 213 ~f~~~~~~-----------~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~---------------------~~~ 260 (810)
T 1wkb_A 213 KFELRENG-----------EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRK---------------------DKE 260 (810)
T ss_dssp EEECCSSC-----------SCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEET---------------------TEE
T ss_pred EEEccCCC-----------CceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCC---------------------Ccc
Confidence 89885421 1368999999999999999999999999998876410 012
Q ss_pred eEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHHHHH---
Q 005759 157 VFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT--- 233 (678)
Q Consensus 157 ~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~--- 233 (678)
+.+|+++++++++..+ ...++++++++|.+|.|++|.||++++++|| +.++||++++|||+||+|||||++||.+
T Consensus 261 ~~~i~~~~~~~~~~~~-~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi-~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~ 338 (810)
T 1wkb_A 261 ETWIVSKEAAYKLSFQ-DREIEVIEEFKGEKLIGKYVRNPVSGDEVII-LPAEFVDPDNATGVVMSVPAHAPFDHVALED 338 (810)
T ss_dssp EEEEEEHHHHHHHTTS-SCEEEEEEECTTTTTTTCEEECSSSCCEEEE-EECTTSCTTSTTSCEEECTTTCHHHHHHHCC
T ss_pred eeeeeHHHHHHHHHhh-hcceEEEEEEEchhhcCCEEECCCCCCeeEE-EecCcccCCCCceeEEeCCCCCHHHHHHHHh
Confidence 7899999888877554 2357889999999999999999999999999 6799999999999999999999999986
Q ss_pred -------HHHcCCC--------cccccCC---------------------------------------CCccccccCccC
Q 005759 234 -------SLKYGLP--------ILSPVDD---------------------------------------EGKFTEEAGKFS 259 (678)
Q Consensus 234 -------~~~~~l~--------~~~~vd~---------------------------------------~G~~~~~~~~~~ 259 (678)
|++|||| ++++|+. +|+++ .+.|.
T Consensus 339 ~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~--~g~~~ 416 (810)
T 1wkb_A 339 LKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYE 416 (810)
T ss_dssp CSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC--SGGGT
T ss_pred hccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEe--ccCcC
Confidence 4678877 6666531 56666 57899
Q ss_pred CceecccchHHHHHHHHhcCceeeeeccccccccccCCCCCeEEc-ccCcccccchH--HHHHHHHHhhcCc--------
Q 005759 260 GLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFR-ATEQWFASVEG--FRQAAMDAIGQVK-------- 328 (678)
Q Consensus 260 G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r-~t~QWFi~~~~--~~~~~~~~i~~v~-------- 328 (678)
|+.+. +|++.|++.|++.|.+.....+.| ||+|||||+|++++ +++|||+++++ +++.++++++++.
T Consensus 417 G~~v~-~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~ 494 (810)
T 1wkb_A 417 GKPVQ-EVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRA 494 (810)
T ss_dssp TEEHH-HHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHH
T ss_pred CeEHH-HhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchhc
Confidence 99995 899999999999999987666555 89999999999999 79999999974 6666655443211
Q ss_pred --------------------------------------------------------------------------------
Q 005759 329 -------------------------------------------------------------------------------- 328 (678)
Q Consensus 329 -------------------------------------------------------------------------------- 328 (678)
T Consensus 495 ~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 574 (810)
T 1wkb_A 495 QFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSE 574 (810)
T ss_dssp HHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHHHHSCCCH
T ss_pred hHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcCCCHHHcCccceeeeecccccc
Confidence
Q ss_pred --------------------------ccCCC-------------------------------------------------
Q 005759 329 --------------------------WVPPQ------------------------------------------------- 333 (678)
Q Consensus 329 --------------------------~~P~~------------------------------------------------- 333 (678)
|+|.+
T Consensus 575 g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS 654 (810)
T 1wkb_A 575 DKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKS 654 (810)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTT
T ss_pred CccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhc
Confidence 12332
Q ss_pred ---------CCCCCCchhhhHHhh-hcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHH
Q 005759 334 ---------EAPGYGADVLRLWVS-SVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQ 403 (678)
Q Consensus 334 ---------~~~~yGaD~lRl~la-~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~ 403 (678)
++++||+|+||||++ ++++.+|++|+++.+++..++++|++|+++++.++. .+ ....+...|+
T Consensus 655 ~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~---~~----~~~~~~~~d~ 727 (810)
T 1wkb_A 655 KGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE---VK----GNVELKDIDR 727 (810)
T ss_dssp TTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC---CC----SCCCCCHHHH
T ss_pred CCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc---Cc----ccccCCHHHH
Confidence 234899999999997 688999999999999999999999999999987541 11 1224568999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhch
Q 005759 404 YALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPI 483 (678)
Q Consensus 404 ~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPi 483 (678)
|+++++++++++++++|++|+|++|++.++.++.+ .+|+|++.+|++ + +.+.+++++++|+.+++||+||
T Consensus 728 ~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~-~~n~yi~~~k~~------~---~~~~~~~l~~~l~~l~~lLaP~ 797 (810)
T 1wkb_A 728 WMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMN-DLRWYLRRTEGR------D---DEAKRYVLRTLADVWVRLMAPF 797 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHH-HHHHHHHHTTTC------C---CHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-HHHHHHHHhcCc------c---hhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999976544444 579999998862 1 1223789999999999999999
Q ss_pred hhHHHHHHHHhCC
Q 005759 484 LPHLAEDVWQNLP 496 (678)
Q Consensus 484 lP~~aEEiw~~l~ 496 (678)
|||+|||||++||
T Consensus 798 ~P~~aEelw~~Lg 810 (810)
T 1wkb_A 798 TPHICEELWEKLG 810 (810)
T ss_dssp SHHHHHHHHHHCC
T ss_pred hhHHHHHHHHhcC
Confidence 9999999999885
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=1.4e-72 Score=664.00 Aligned_cols=478 Identities=21% Similarity=0.324 Sum_probs=346.3
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccc---eEE--
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSR---SIY-- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~---~~~-- 75 (678)
++||++||+++||+|+|+||||+|+++++|+|.+|+++|+||++.++|+|||+|+|+|||+||++ |++.+ +.+
T Consensus 109 ~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~--g~~~~~~~~~~~~ 186 (878)
T 2v0c_A 109 KESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVE--GRCWRHEDTPVEK 186 (878)
T ss_dssp HHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEET--TEESSCTTCBCEE
T ss_pred HHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhc--CCCcccCCCceEE
Confidence 47999999999999999999999999999999999999999999999999999999999999984 44433 222
Q ss_pred -----EEEEeeeCCCCCccccccc---------------------------CCCceeEEeecCcceeccccEEEECCCCc
Q 005759 76 -----AVFRMVSAPPSTSGLLNEF---------------------------LPDLGLAVWTTTPWTVPANAAVAVNAKLQ 123 (678)
Q Consensus 76 -----v~f~l~~~~~~~~~~l~~~---------------------------~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~ 123 (678)
.+|+++++++.|++.++.. ..+.+++||||||||||||+||||||+++
T Consensus 187 ~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~ 266 (878)
T 2v0c_A 187 RELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHP 266 (878)
T ss_dssp EEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSH
T ss_pred EecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCe
Confidence 2477777665544433210 02468999999999999999999999999
Q ss_pred EEEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEE-EEeeecCcccCCEeeCCCCCCcc
Q 005759 124 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVI-KKTLAGSDLENCRYVHPVDNRQC 202 (678)
Q Consensus 124 Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i-~~~~~G~~l~g~~~~~P~~~~~~ 202 (678)
|+.+..+ ++.....++.++.+......+-++ ..+++|. |.|+++.||++++++
T Consensus 267 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~g~~~~~P~~~~~i 320 (878)
T 2v0c_A 267 LTLELAA-------------------------PEKREEVLAYVEAAKRKTEIERQAEGREKTGV-FLGAYALNPATGERI 320 (878)
T ss_dssp HHHHHSC-------------------------GGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCE-EEEEEEECTTTCCEE
T ss_pred eeehhcc-------------------------chhHHHHHHHHHHHhhhhhhhhhhccceeeeE-ecCcEEECCCCCCEe
Confidence 8743211 010000111122111110000011 3467787 899999999999999
Q ss_pred cEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCCcccccCC---------CCccccc-----cCccCCceecccch
Q 005759 203 PVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDD---------EGKFTEE-----AGKFSGLDVLGDGN 268 (678)
Q Consensus 203 pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~vd~---------~G~~~~~-----~~~~~G~~v~~~~~ 268 (678)
||| .++||++++|||+||+|||||++||++|++||||++++|+. +|.|+++ .+.|.|+++. +|+
T Consensus 321 pi~-~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~-eA~ 398 (878)
T 2v0c_A 321 PIW-TADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESE-EGK 398 (878)
T ss_dssp EEE-ECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHH-HHH
T ss_pred EEE-EeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCCcCHH-HHH
Confidence 994 59999999999999999999999999999999999999974 3466654 4679999995 999
Q ss_pred HHHHHHHHhcCceeeeecc--------ccccccccCCCCCeEEccc----------------------------------
Q 005759 269 VAVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKKPTIFRAT---------------------------------- 306 (678)
Q Consensus 269 ~~ii~~L~~~g~l~~~~~~--------~h~yp~~wr~~~pvi~r~t---------------------------------- 306 (678)
+.|++.|+++|.+.....| +|+| |+++.|++++..
T Consensus 399 ~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~---WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~ 475 (878)
T 2v0c_A 399 RKVIAWLEEKGLGKGRVTYRLRDWLISRQRY---WGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEA 475 (878)
T ss_dssp HHHHHHHHHHTSEEEEEEESCCCEECEESCS---SSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGG
T ss_pred HHHHHHHHHCCCCCCceEEecccchhhcccc---cCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhh
Confidence 9999999999987766555 5888 888888877431
Q ss_pred -----------------------CcccccchH-H-------------HHHHHHHhhcCcccCCC----------------
Q 005759 307 -----------------------EQWFASVEG-F-------------RQAAMDAIGQVKWVPPQ---------------- 333 (678)
Q Consensus 307 -----------------------~QWFi~~~~-~-------------~~~~~~~i~~v~~~P~~---------------- 333 (678)
++||-+.-. + ++.+ + +|+|.+
T Consensus 476 ~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~-~-----~~~P~D~yi~G~d~~ilhl~y~ 549 (878)
T 2v0c_A 476 HPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKA-N-----AWMPVDQYIGGVEHAVLHLLYS 549 (878)
T ss_dssp CHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHH-H-----HHCSBSEEECCGGGTTTHHHHH
T ss_pred hHhhcCCcCCCCCCcceeccccccccccccchhhhccCccccccccCHHHH-c-----cCCCCeEEEechHHHHHHHHHH
Confidence 122211000 0 0000 0 011111
Q ss_pred --------------------------------------------------------------------------------
Q 005759 334 -------------------------------------------------------------------------------- 333 (678)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (678)
T Consensus 550 r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 629 (878)
T 2v0c_A 550 RFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGT 629 (878)
T ss_dssp HHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSS
T ss_pred HHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCC
Confidence
Q ss_pred ---------------------CCCCCCchhhhHHhhh-cCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 005759 334 ---------------------EAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGN 391 (678)
Q Consensus 334 ---------------------~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~ 391 (678)
++++||||+||||+++ +++.+|++|+++.+++..++++|+||++++...++.. .. .
T Consensus 630 ~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~-~~-~ 707 (878)
T 2v0c_A 630 LHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLE-TS-G 707 (878)
T ss_dssp EEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHT-CC-C
T ss_pred chhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccc-cc-c
Confidence 2247999999999987 8999999999999999999999999999877654321 00 1
Q ss_pred ccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHH
Q 005759 392 SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSA 471 (678)
Q Consensus 392 ~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~ 471 (678)
.++...+...|+|+++++++++++++++|++|+|++|++.+++|++ ++ +.|.+. .. .++++++
T Consensus 708 ~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~-~l-~k~~~~-------~~--------~~~~l~~ 770 (878)
T 2v0c_A 708 VFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLN-AL-YEYRKD-------RP--------VTPVYRT 770 (878)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HH-HHHHHH-------CC--------SCHHHHH
T ss_pred ccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HH-hhhccc-------ch--------hHHHHHH
Confidence 1122346789999999999999999999999999999999999996 45 456442 11 0157999
Q ss_pred HHHHHHHHHhchhhHHHHHHHHhCCCCccccCCCCCcceeeccCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 005759 472 HLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVAR 551 (678)
Q Consensus 472 ~l~~l~~lLaPilP~~aEEiw~~l~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~~~~lr~~v~~~ie~~r 551 (678)
+|+.+++||+|||||+|||||+.|+ . +||+.++||+.++.+.. .+.++.+.+++..++..++..|
T Consensus 771 ~l~~l~~LLaPf~P~~aEElw~~Lg-~---------~sv~~~~wP~~d~~~l~-----~~~~~~~vqvngkvR~~i~v~~ 835 (878)
T 2v0c_A 771 AIRYYLQMLFPFAPHLAEELWHWFW-P---------DSLFEAGWPELDEKALE-----KDVVEVAVQVNGAVAGTIHIPK 835 (878)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHC-S---------SCGGGSCCCCCCGGGGC---------------------------
T ss_pred HHHHHHHHHcccchHHHHHHHHHcC-C---------CceeecCCCCCCHHHHH-----HHHHHHHHhhHHHHHHHcccCc
Confidence 9999999999999999999999997 3 58999999998775432 3456777777777766666554
No 7
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.8e-71 Score=649.13 Aligned_cols=457 Identities=22% Similarity=0.328 Sum_probs=323.6
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEE-----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY----- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~----- 75 (678)
++||++||+++||+|+|+||||.|+++++|+|.+|+++|+|||+.++|+|||+|+|+||++||+ +|+|++|..
T Consensus 129 ~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~--~g~~~~~g~~ve~~ 206 (880)
T 4arc_A 129 KNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVI--DGCCWRCDTKVERK 206 (880)
T ss_dssp HHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC--------------------------------
T ss_pred HHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhh--cCcCcCCCCccEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999986 555555432
Q ss_pred ----EEEEeeeCCCCCccccccc----------------------------CCCceeEEeecCcceeccccEEEECCCCc
Q 005759 76 ----AVFRMVSAPPSTSGLLNEF----------------------------LPDLGLAVWTTTPWTVPANAAVAVNAKLQ 123 (678)
Q Consensus 76 ----v~f~l~~~~~~~~~~l~~~----------------------------~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~ 123 (678)
.+|++++|++.|++.++.+ ..+.+++|||||||||||++||+|||+++
T Consensus 207 ~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~ 286 (880)
T 4arc_A 207 EIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHP 286 (880)
T ss_dssp CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCH
T ss_pred EccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcH
Confidence 2577777766655444321 02368999999999999999999999999
Q ss_pred EEEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEE-EEeeecCcccCCEeeCCCCCCcc
Q 005759 124 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVI-KKTLAGSDLENCRYVHPVDNRQC 202 (678)
Q Consensus 124 Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i-~~~~~G~~l~g~~~~~P~~~~~~ 202 (678)
|+..... .+.++..|+++. ..+-..+.++ ..+.+|. +.|+++.||++++++
T Consensus 287 ~~~~~~~------------~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~g~-~~g~~~~~P~~~~~i 338 (880)
T 4arc_A 287 LAQKAAE------------NNPELAAFIDEC---------------RNTKVAEAEMATMEKKGV-DTGFKAVHPLTGEEI 338 (880)
T ss_dssp HHHHHGG------------GCHHHHHHHTC-------------------------------CEE-EEEEEEECTTTCCEE
T ss_pred HHHHHhc------------ChHHHHHHHHHH---------------hccCchhhhhccceeecc-ccCcEEecCCCCCEe
Confidence 8733211 001111111111 1000001111 1245665 679999999999999
Q ss_pred cEEEccCccccCCCCCceeccCCCCHHHHHHHHHcCCCcccccCC---------CCcccc-----ccCccCCceecccch
Q 005759 203 PVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDD---------EGKFTE-----EAGKFSGLDVLGDGN 268 (678)
Q Consensus 203 pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~vd~---------~G~~~~-----~~~~~~G~~v~~~~~ 268 (678)
|||+ ++||++++|||+||+|||||++||++|++||||++++|+. +|.|++ +.+.|.|+++. +|+
T Consensus 339 pi~~-~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~-eA~ 416 (880)
T 4arc_A 339 PVWA-ANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHE-AAF 416 (880)
T ss_dssp EEEE-ETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHH-HHH
T ss_pred EEEE-eCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCCHH-HHH
Confidence 9955 9999999999999999999999999999999999988852 223443 34789999995 999
Q ss_pred HHHHHHHHhcCceeeeecc--------ccccccccCCCCCeEEccc----------------------------------
Q 005759 269 VAVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKKPTIFRAT---------------------------------- 306 (678)
Q Consensus 269 ~~ii~~L~~~g~l~~~~~~--------~h~yp~~wr~~~pvi~r~t---------------------------------- 306 (678)
++|++.|+++|++.+...| +|+| |+++.|++++..
T Consensus 417 ~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRy---WG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w 493 (880)
T 4arc_A 417 NAIADKLTAMGVGERKVNYRLRDWGVSRQRY---WGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEW 493 (880)
T ss_dssp HHHHHHHHHTTSEEEEEEESCCCEECEESCS---SSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTT
T ss_pred HHHHHHHHHcCCcceeEEEEcccceeeeeec---cCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccc
Confidence 9999999999998877655 5888 999999988531
Q ss_pred -----------------CcccccchH-------------H-HHHHH--------------------------HHhhc---
Q 005759 307 -----------------EQWFASVEG-------------F-RQAAM--------------------------DAIGQ--- 326 (678)
Q Consensus 307 -----------------~QWFi~~~~-------------~-~~~~~--------------------------~~i~~--- 326 (678)
++||-+.-- + ++.+. ..+..
T Consensus 494 ~~~~cpg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~ 573 (880)
T 4arc_A 494 AKTTVNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGM 573 (880)
T ss_dssp TEEESSSSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTS
T ss_pred eeeccCCCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhc
Confidence 245543200 0 00000 00000
Q ss_pred ---------------C--------------cccC-------------------------------------------CCC
Q 005759 327 ---------------V--------------KWVP-------------------------------------------PQE 334 (678)
Q Consensus 327 ---------------v--------------~~~P-------------------------------------------~~~ 334 (678)
| .|+| ..+
T Consensus 574 ~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~di 653 (880)
T 4arc_A 574 VNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVM 653 (880)
T ss_dssp CCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHH
T ss_pred ccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHH
Confidence 0 0000 002
Q ss_pred CCCCCchhhhHHhhhc-CCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHH
Q 005759 335 APGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIV 413 (678)
Q Consensus 335 ~~~yGaD~lRl~la~~-~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~ 413 (678)
+++||||++|||+++. ++.+|++|+++.+.++.++++++||++++...+... ...+...+...|+|+++++++++
T Consensus 654 IekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~----~~~~~~~l~~~D~~ll~~l~~~i 729 (880)
T 4arc_A 654 VERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDV----AALNVDALTENQKALRRDVHKTI 729 (880)
T ss_dssp HHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCC----CCCCSTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccc----cccccccCCHHHHHHHHHHHHHH
Confidence 3489999999999875 889999999999999999999999999987654211 11123456789999999999999
Q ss_pred HHHHHHHH-hcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 005759 414 KNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVW 492 (678)
Q Consensus 414 ~~v~~~~e-~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw 492 (678)
++++++|+ +|+|++|++.+|+|++ ++++ | .. ++ .+.+.+++.+++.+++||+|||||+|||||
T Consensus 730 ~~V~~a~ed~~~fntAi~~l~efvn-~l~k-~---------~~--~~---~~~~~~l~~~l~~ll~LLaPf~PhiaEElW 793 (880)
T 4arc_A 730 AKVTDDIGRRQTFNTAIAAIMELMN-KLAK-A---------PT--DG---EQDRALMQEALLAVVRMLNPFTPHICFTLW 793 (880)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH-HHHT-S---------CC--SS---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHhhhchhHHHHHHHHHHH-HHHh-h---------hc--cc---hHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 99999999 8999999999999995 3543 2 11 11 245678999999999999999999999999
Q ss_pred HhCCCCccccCCCCCcceeeccCCCCccc
Q 005759 493 QNLPFAYTLEDGSAAEFVFESKWPVLDEK 521 (678)
Q Consensus 493 ~~l~~~~~~~~~~~~~sV~~~~wP~~~~~ 521 (678)
+.|+.. +||+.++||++++.
T Consensus 794 ~~Lg~~---------~sv~~~~wP~~d~~ 813 (880)
T 4arc_A 794 QELKGE---------GDIDNAPWPVADEK 813 (880)
T ss_dssp HHTTCS---------SCGGGSCCCCCCHH
T ss_pred HHcCCC---------CeEEeCCCCCCCHH
Confidence 999853 69999999987754
No 8
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=1.3e-41 Score=329.63 Aligned_cols=182 Identities=36% Similarity=0.577 Sum_probs=158.7
Q ss_pred ccceEEEEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCC
Q 005759 70 VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGN 149 (678)
Q Consensus 70 ~~~~~~v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~ 149 (678)
.|+++||+|++.+... . ...+.+++||||||||||||+||||||+++|++++.+
T Consensus 2 ~S~~i~V~F~~~~~~~---~----~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~------------------- 55 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKK---L----GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG------------------- 55 (186)
T ss_dssp -CCEEEEEEEBSCGGG---G----TCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEET-------------------
T ss_pred ccceEEEEEEeCCCcc---c----cCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeC-------------------
Confidence 5789999999964210 0 0124789999999999999999999999999988763
Q ss_pred cccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCC---CCcccEEEccCccccCCCCCceeccCCC
Q 005759 150 VLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVD---NRQCPVVIGGDYITTESGTGLVHTAPGH 226 (678)
Q Consensus 150 ~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~---~~~~pv~i~~~~V~~~~GTG~V~~aPah 226 (678)
++.+++++++++++.++ +++++++++|.+|.|++|.||++ ++.+|| +.++||++++|||+||+||||
T Consensus 56 ------~~~~i~a~~~~~~~~~~---~~~~~~~~~G~~l~g~~~~~P~~~~~~~~ipi-~~~~~V~~~~GTG~V~~aPah 125 (186)
T 1wny_A 56 ------DEALILEEGLGRKLLGE---GTPVLKTFPGKALEGLPYTPPYPQALEKGYFV-VLADYVSQEDGTGIVHQAPAF 125 (186)
T ss_dssp ------TEEEEEEHHHHHHHHCT---TSCEEEEEEHHHHTTCBBCCSSCCCCSSCCBE-EECTTCCSSSSCSCEEECGGG
T ss_pred ------CcchHHHHHHHHHHhhc---CcEEEEEEEcccccCcEEECCccccCCCEEEE-EEeCcCcCCCCcccEEEcCCC
Confidence 47899999999988764 56788999999999999999996 889999 569999999999999999999
Q ss_pred CHHHHHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHHHHHHhcCceeeeeccccc
Q 005759 227 GQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHK 290 (678)
Q Consensus 227 g~~D~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~ 290 (678)
|++||++|++||||++++||++|+|+++ + |.|+.+. +|++.|++.|+++|.+++.++|+|+
T Consensus 126 g~~D~~~~~~~~L~i~~~id~~G~~~~~-~-~~Gl~v~-~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 126 GAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFR-EANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp CHHHHHHHHHHTCCCCCCBCTTSBBCST-T-CTTCBHH-HHHHHHHHHHHHTTCEEEEEC----
T ss_pred CHHHHHHHHHcCCceEeeeCCCccCccC-C-CCCcCHH-HHHHHHHHHHHHCCCeecceeEEcC
Confidence 9999999999999999999999999987 6 9999995 9999999999999999999999986
No 9
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=3.1e-40 Score=374.39 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=133.2
Q ss_pred CCCCCchhhhHHhhh-cCCCCceeeChhhhhHH--HHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHH
Q 005759 335 APGYGADVLRLWVSS-VDYTGDVMIGPQVLRQM--SDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLEN 411 (678)
Q Consensus 335 ~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~--~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~ 411 (678)
+++||||+||||+++ +++++|++|+++.+... +++.++++|+++++++...++.. .......+..+|+|+++++++
T Consensus 338 i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~-~~~~~~~~~~~d~~il~~l~~ 416 (542)
T 3u1f_A 338 AEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNG-EWPSPAAYTEEDESLIQLIKD 416 (542)
T ss_dssp HHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTS-BCCCCCCCCHHHHHHHHHHHH
T ss_pred HhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccC-CCCccchhhHHHHHHHHHhhh
Confidence 358999999999986 78899999999988764 45789999999998876555432 222345678999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhcc-ccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 005759 412 IVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDR-LYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAED 490 (678)
Q Consensus 412 ~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~r-l~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEE 490 (678)
++++++++|++|+|++|++.|++|+ +++|+|++..||+ |.+ .+..+++++++++.++++.+++||+|||||+|||
T Consensus 417 ~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~Y~~~~~pw~l~k--~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aee 492 (542)
T 3u1f_A 417 LPGTADHYYLIPDIQKAIIAVFDVL--RAINAYVTDMAPWKLVK--TDPERLRTVLYITLEGVRVTTLLLSPILPRKSVV 492 (542)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCchhhhc--CCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 9999999999999999999999998 4799999999993 222 2344556778888899999999999999999999
Q ss_pred HHHhCCCC
Q 005759 491 VWQNLPFA 498 (678)
Q Consensus 491 iw~~l~~~ 498 (678)
||++|+..
T Consensus 493 i~~~Lg~~ 500 (542)
T 3u1f_A 493 IFDMLGVP 500 (542)
T ss_dssp HHHHHTCC
T ss_pred HHHHCCCC
Confidence 99999753
No 10
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=3.8e-37 Score=357.04 Aligned_cols=156 Identities=17% Similarity=0.260 Sum_probs=126.8
Q ss_pred CCCCchhhhHHhhhc-CCCCceeeChhhhhHH--HHHHHHHHHHHHH----HHhcccCCCCCCccCCCCCCHhHHHHHHH
Q 005759 336 PGYGADVLRLWVSSV-DYTGDVMIGPQVLRQM--SDIYRKLRGTLRY----LLGNLHDWRVGNSISYDDLPMIDQYALFQ 408 (678)
Q Consensus 336 ~~yGaD~lRl~la~~-~~~~D~~~s~~~l~~~--~~~~~ki~n~~rf----~l~nl~~~~~~~~~~~~~~~~~D~~il~~ 408 (678)
++||+|+||||+++. ++.+|++|+++.+... ++++++++|++++ +..++++..+ ....+...|+|++++
T Consensus 360 ~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~----~~~~~~~~d~~ll~~ 435 (722)
T 1rqg_A 360 DVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVP----ERGELDELDREALEE 435 (722)
T ss_dssp TTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCC----CCCCCCHHHHHHHHH
T ss_pred HhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CcccCCHHHHHHHHH
Confidence 589999999999874 8899999999988764 4467777776544 4444332211 123457899999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 005759 409 LENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLA 488 (678)
Q Consensus 409 l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~a 488 (678)
+++++++++++|++|+|++|++.+++|+ +++|+|++..|||++... +..+.+++++++.++++.+++||+|||||+|
T Consensus 436 l~~~~~~v~~~~e~~~f~~A~~~i~~~~--~~~n~Yi~~~kpw~~~k~-~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~a 512 (722)
T 1rqg_A 436 IEKAFKEVGELIMNYRFKDALKRVMSLA--SFGNRYFDHKQPWKTAKE-DKVRTGTTVNISLQIVKALGILLEPFLPDAS 512 (722)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHTTCHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCchhhcCC-CHHHHHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 9999999999999999999999999998 589999999999776532 3333456777888999999999999999999
Q ss_pred HHHHHhCCCC
Q 005759 489 EDVWQNLPFA 498 (678)
Q Consensus 489 EEiw~~l~~~ 498 (678)
||||++|+..
T Consensus 513 eei~~~L~~~ 522 (722)
T 1rqg_A 513 EKIWHLLNLD 522 (722)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 9999999853
No 11
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=100.00 E-value=3e-37 Score=305.16 Aligned_cols=196 Identities=21% Similarity=0.276 Sum_probs=143.8
Q ss_pred cceEEEEEEeeeCCC-----CCccccccc---CCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccC
Q 005759 71 SRSIYAVFRMVSAPP-----STSGLLNEF---LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPAN 142 (678)
Q Consensus 71 ~~~~~v~f~l~~~~~-----~~~~~l~~~---~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~ 142 (678)
|....|+|++.+... ...+.+.+. ....+++||||||||||||+||||||++.|+.+...+..
T Consensus 3 S~G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~--------- 73 (219)
T 3o0a_A 3 SEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGE--------- 73 (219)
T ss_dssp -CCEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHH---------
T ss_pred eeEEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCc---------
Confidence 445678999965320 000111110 022689999999999999999999999999865432100
Q ss_pred CCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceec
Q 005759 143 KKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHT 222 (678)
Q Consensus 143 ~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~ 222 (678)
. + ..+.+++++++++.+.+..+.+..++.+++|. |.|++|.||++++++||| .++||++++|||+||+
T Consensus 74 ---~---~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~-l~G~~~~~Pl~~~~iPI~-~adyV~~~~GTGaV~~ 141 (219)
T 3o0a_A 74 ---R---L----GNACYSDVENFVEKMKKMSTRERTMEEDKEGV-FLGVYATNPANGEKIPVW-SANYVLYEYGTGAIMC 141 (219)
T ss_dssp ---H---T----TCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEE-EEEEEEECTTTCCEEEEE-EETTSCTTSTTSEEEE
T ss_pred ---c---c----cchhHHHHHHHHHHHHhhccccceeEEEeeeE-EcCCEEECCCCCCeeeEE-EecccccCCCCCeEEE
Confidence 0 0 00112556667766654322222223678998 999999999999999995 5999999999999999
Q ss_pred cCCCCHHHHHHHHHcCCCcccccCC-------CCccccc-----cCccCCceecccchHHHHHHHHhcCceeeeeccc
Q 005759 223 APGHGQEDYVTSLKYGLPILSPVDD-------EGKFTEE-----AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYE 288 (678)
Q Consensus 223 aPahg~~D~~~~~~~~l~~~~~vd~-------~G~~~~~-----~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~ 288 (678)
|||||++||++|++||||++++|++ +|+|+++ .+.|.|+++. +|++.|++.|+++|++.+...|+
T Consensus 142 aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~Gl~~~-eA~~~Ii~~L~~~g~l~~~~~yr 218 (219)
T 3o0a_A 142 VPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSE-TAKRKITEWLQDRGLGEKKVSYR 218 (219)
T ss_dssp CTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEECSCGGGTTCBHH-HHHHHHHHHHHHTTSEEEC----
T ss_pred CCCCCHHHHHHHHHcCCCceeeeCCccccccccccccccceEecCCCCCCCCHH-HHHHHHHHHHHHCCCeeeeeeec
Confidence 9999999999999999999999986 5777765 3789999995 99999999999999998877653
No 12
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=100.00 E-value=9.1e-36 Score=302.59 Aligned_cols=191 Identities=20% Similarity=0.236 Sum_probs=150.1
Q ss_pred EEEEEeeeCCCCCccccccc-----CCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCC
Q 005759 75 YAVFRMVSAPPSTSGLLNEF-----LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGN 149 (678)
Q Consensus 75 ~v~f~l~~~~~~~~~~l~~~-----~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~ 149 (678)
.|++++.+.+..+...+... ..+.+++||||||||||||+||||||+++|++++..
T Consensus 5 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~------------------- 65 (261)
T 2wfg_A 5 GIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAG------------------- 65 (261)
T ss_dssp EEEEEEEECCHHHHHHHHHTTCCTTTSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECS-------------------
T ss_pred EEEEEEecCcHHHHHHhcccccccCCCCCEEEEEECCchHHhhhheEEECCCCceEEEEec-------------------
Confidence 46778776544332212211 124789999999999999999999999999988763
Q ss_pred cccCCCceEEEEeccchHHHHHHhCC-----ceEEEEeeecCcccCCEeeCCCC-CCcccEEEccCccccCCCCCceecc
Q 005759 150 VLKDQKKVFIIVASDLVPTLEAKWGT-----KLVIKKTLAGSDLENCRYVHPVD-NRQCPVVIGGDYITTESGTGLVHTA 223 (678)
Q Consensus 150 ~~~~~~~~~~iia~~~~~~l~~~~~~-----~~~i~~~~~G~~l~g~~~~~P~~-~~~~pv~i~~~~V~~~~GTG~V~~a 223 (678)
++.++++.++.+.+....+. +++++++++|.+|.|++|.||++ ++.+|| +.++||++++|||+||+|
T Consensus 66 ------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~ipV-~~adyV~~~~GTG~V~~v 138 (261)
T 2wfg_A 66 ------NGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRV-LPMETVLATKGTGVVTCV 138 (261)
T ss_dssp ------TTEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEEECTTCSSCSEEE-EECTTCCTTSTTSCEEEC
T ss_pred ------CceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCCEEECCCCCCceeEE-EeeccccCCCCCCeeEEc
Confidence 24577777777776655442 46778899999999999999998 578999 569999999999999999
Q ss_pred CCCCHHHHHHHHH-------cC-------CCcccccCC--CCc---------------------------------cccc
Q 005759 224 PGHGQEDYVTSLK-------YG-------LPILSPVDD--EGK---------------------------------FTEE 254 (678)
Q Consensus 224 Pahg~~D~~~~~~-------~~-------l~~~~~vd~--~G~---------------------------------~~~~ 254 (678)
||||++||++|++ || ||++++|+. +|. |+..
T Consensus 139 PaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~ 218 (261)
T 2wfg_A 139 PSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGT 218 (261)
T ss_dssp TTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCE
T ss_pred CCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhcccccce
Confidence 9999999999999 99 899999976 333 3222
Q ss_pred --cCccCCceecccchHHHHHHHHhcCceeeeeccccccc
Q 005759 255 --AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYP 292 (678)
Q Consensus 255 --~~~~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~~h~yp 292 (678)
.+.|.|+++. +|++.|++.|+++|.+.....++|+.-
T Consensus 219 ~~~g~f~Gl~v~-eA~~~Ii~~L~~~G~~~~~~~~~h~~~ 257 (261)
T 2wfg_A 219 MLIGKYKGDKVE-DAKPKVKQDLIDEGLAFVYNEPELEHH 257 (261)
T ss_dssp ECSSTTTTSBHH-HHHHHHHHHHHHTTSEEEECC------
T ss_pred EeccccCCeEHH-HHHHHHHHHHHHCCCeeeeeeeeeccc
Confidence 5789999995 999999999999999999999988753
No 13
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=4e-35 Score=272.56 Aligned_cols=140 Identities=24% Similarity=0.336 Sum_probs=125.4
Q ss_pred ccceEEEEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCC
Q 005759 70 VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGN 149 (678)
Q Consensus 70 ~~~~~~v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~ 149 (678)
.++++|++|++ +. +.+++||||||||||||+||||||++..
T Consensus 3 ~~~~~~v~F~~-~~-------------~~~l~i~TTrP~Tl~g~~aiav~P~~~~------------------------- 43 (147)
T 1wka_A 3 PGKLYTLRYEV-EG-------------GGFIEIATVRPETVFADQAIAVHPEDER------------------------- 43 (147)
T ss_dssp -CEEEEEEEEB-TT-------------SCEEEEEESCGGGGGGCCEEEECTTCTT-------------------------
T ss_pred cceEEEEEEEC-CC-------------CcEEEEEECCceecccceEEEECCCCch-------------------------
Confidence 46789999998 31 3579999999999999999999999741
Q ss_pred cccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHH
Q 005759 150 VLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQE 229 (678)
Q Consensus 150 ~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~ 229 (678)
.++|.|++|.||++++++|| +.++||++++|||+||+|||||++
T Consensus 44 -----------------------------------~~~l~g~~~~~P~~~~~ipI-~~~~~V~~~~GTG~V~~~Pah~~~ 87 (147)
T 1wka_A 44 -----------------------------------YRHLLGKRARIPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPL 87 (147)
T ss_dssp -----------------------------------TGGGTTCEEECTTSSCEEEE-EECTTCCTTSTTSEEEECTTTCHH
T ss_pred -----------------------------------HHHhcCCEEECCCCCCeeEE-EEeCccccCCCCCcEEEccCCCHH
Confidence 02578999999999999999 569999999999999999999999
Q ss_pred HHHHHHHcCCCcccccCCCCccccccCc----cCCceecccchHHHHHHHHhcCceeeeecc
Q 005759 230 DYVTSLKYGLPILSPVDDEGKFTEEAGK----FSGLDVLGDGNVAVVKYLDEQMSLIMEEPY 287 (678)
Q Consensus 230 D~~~~~~~~l~~~~~vd~~G~~~~~~~~----~~G~~v~~~~~~~ii~~L~~~g~l~~~~~~ 287 (678)
||++|++||||++++||++|+| +.++ |.|+++. +|++.|++.|+++|.+.+.+.|
T Consensus 88 D~~~~~~~~L~~~~~id~~G~~--~~~~~~~~~~Gl~~~-~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 88 DYEIGERHGLKPVSVINLEGRM--EGERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp HHHHHHHHTCCCCCSBCTTSBB--CSTTSCGGGTTSBHH-HHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHcCCCcceEECCCCEE--cCCCcccccCCcCHH-HHHHHHHHHHHHCCCeeeeeEc
Confidence 9999999999999999999999 5566 9999995 8999999999999999988765
No 14
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.1e-35 Score=334.66 Aligned_cols=388 Identities=13% Similarity=0.145 Sum_probs=247.0
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccC---CC-ccc-----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYP---EG-HVS----- 71 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~---~~-~~~----- 71 (678)
+++|++|||++| ++++|+++.|...++++|.+|+++|+||++..+++|||+|+++|++.|+... +| .|.
T Consensus 102 ~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~ 179 (564)
T 3kfl_A 102 KQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLES 179 (564)
T ss_dssp HHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTT
T ss_pred HHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCC
Confidence 368999999999 6899999999999999999999999999999999999999999999998632 11 110
Q ss_pred --ceE-----EEEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCC
Q 005759 72 --RSI-----YAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKK 144 (678)
Q Consensus 72 --~~~-----~v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~ 144 (678)
+.. -.+|+++.+++.+.+.+++ .|.. +.|+.. +
T Consensus 180 g~~~~~~~~~~~f~~l~~~~~~l~~~~~~------------~~~~--------i~P~~~--------------------~ 219 (564)
T 3kfl_A 180 GHVVTWVEEENYMFRLSAFRERLLKYFHD------------HPNC--------IVPEFR--------------------R 219 (564)
T ss_dssp SCBCEEEEEEEEEECGGGGHHHHHHHHHH------------CTTS--------EESHHH--------------------H
T ss_pred CCccEEEecceeEEEHHHHHHHHHHHHHh------------CCCc--------cCCHHH--------------------H
Confidence 000 1234444433322222110 0100 111110 0
Q ss_pred CCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccC
Q 005759 145 SRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAP 224 (678)
Q Consensus 145 ~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aP 224 (678)
+++.+|++++ .+.|.|++.+... ..| |..+ |. ..-.+ + ||+.|.++|.+
T Consensus 220 ~~~~~wl~~g-l~D~~ISR~~~~~--~~W----------------Gipi--P~--~~~~v-~---yVWfDa~~~y~---- 268 (564)
T 3kfl_A 220 REVIKTVEKG-LFDLSISRKRESV--MNW----------------SIPV--PG--DERHC-I---YVWLDALFNYY---- 268 (564)
T ss_dssp HHHHHHHHHC-CCCEECEEEGGGG--TTC----------------SCEE--TT--EEEEE-E---CHHHHHHTHHH----
T ss_pred HHHHHHHhCC-CCCccccCcCCCC--CCC----------------Ceec--CC--CCCCE-E---EEeccCcHHHH----
Confidence 1111222211 2334444310000 001 2221 21 11122 3 67777766542
Q ss_pred CCCHHHHHHHHHc-CCCccc--ccCCC--CccccccCccCCceecccchHHHH--HHHHhcCceeeeeccccccccccCC
Q 005759 225 GHGQEDYVTSLKY-GLPILS--PVDDE--GKFTEEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRT 297 (678)
Q Consensus 225 ahg~~D~~~~~~~-~l~~~~--~vd~~--G~~~~~~~~~~G~~v~~~~~~~ii--~~L~~~g~l~~~~~~~h~yp~~wr~ 297 (678)
.+..+ .-.--. ..++- .++.+..-++.|+++. ..+.++ .+|...|...++..+.|.+
T Consensus 269 --------s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii--~FH~~~wpa~L~a~g~~~~~~v~~hg~------ 332 (564)
T 3kfl_A 269 --------TGALTRVATDGTETLDEDHHALNRWPADVHVVGKDIL--KFHAIYWPAFLMSAELPLPERLVSHGW------ 332 (564)
T ss_dssp --------HHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGH--HHHHTHHHHHHHHTTCCCCSCEEEECC------
T ss_pred --------HHhCccccccccccchhcchhhhcCccceEEEeeccc--chHHHHHHHHHHhCCCCCCcEEEEccc------
Confidence 12111 000000 00000 1222222367888875 245544 7788877644444434433
Q ss_pred CCCeEEcccCcccccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhh-cCCCCceeeChhhhhHH--HHHHHHHH
Q 005759 298 KKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQM--SDIYRKLR 374 (678)
Q Consensus 298 ~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~--~~~~~ki~ 374 (678)
|-.+-.+|+++..+.+. |..++++||+|++|||+++ .++++|++|+++.+... ++++++++
T Consensus 333 -----------v~~~G~KMSKS~GNvV~-----p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~ 396 (564)
T 3kfl_A 333 -----------WTKDHKKISKSLGNAFD-----PVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLG 396 (564)
T ss_dssp -----------EEETTEECCTTTTCCCC-----HHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHH
T ss_pred -----------EeeCCccccccCCCCCC-----HHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 11122244444443332 4445668999999999987 88999999999988764 56889999
Q ss_pred HHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhc-ccc
Q 005759 375 GTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD-RLY 453 (678)
Q Consensus 375 n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~-rl~ 453 (678)
|+++++++.+..+.. .......+...|+|++++++++++.+.++|++|+|++|++.+++|++ ++|+|++..|| +|+
T Consensus 397 N~~~R~~~~~~~~~g-~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~--~~n~Y~~~~kpW~l~ 473 (564)
T 3kfl_A 397 NLVSRCVAPKINVNG-MWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLR--SLNAYVTENAPWKLV 473 (564)
T ss_dssp HHHHHHHCTTTSTTS-BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHHhcCC-cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHhcCChhhh
Confidence 999988876653321 11112356789999999999999999999999999999999999994 79999999999 444
Q ss_pred CCCCChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 005759 454 TGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 498 (678)
Q Consensus 454 ~~~~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~ 498 (678)
+ .+..++++++.++.++++.+++||+|||||+|||||++|+..
T Consensus 474 ~--~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 516 (564)
T 3kfl_A 474 K--MDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVP 516 (564)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred c--CCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCC
Confidence 3 233444678889999999999999999999999999999753
No 15
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=100.00 E-value=5.1e-35 Score=285.78 Aligned_cols=168 Identities=25% Similarity=0.300 Sum_probs=134.4
Q ss_pred cceEEEEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCc
Q 005759 71 SRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNV 150 (678)
Q Consensus 71 ~~~~~v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~ 150 (678)
.++++|+|++.+ .+.+++||||||||||||+||||||+++|+++..+
T Consensus 10 ~~g~~v~F~~~~-------------~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~-------------------- 56 (196)
T 2ajg_A 10 GEGVEITFNVND-------------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAE-------------------- 56 (196)
T ss_dssp -CEEEEEEEBTT-------------CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHT--------------------
T ss_pred CceEEEEEEeCC-------------CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcC--------------------
Confidence 678999999853 23689999999999999999999999999854211
Q ss_pred ccCCCceEEEEeccchHHHHHHh----CCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCC
Q 005759 151 LKDQKKVFIIVASDLVPTLEAKW----GTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGH 226 (678)
Q Consensus 151 ~~~~~~~~~iia~~~~~~l~~~~----~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPah 226 (678)
+ +++++.+.+.. ..+.+++...+|.+|.|++|.||++++++|| +.++||++++|||+||+||||
T Consensus 57 -----~------~~~~~~~~~~~~~~~~~~~~~~~~~k~g~l~G~~~~~P~~~~~ipV-~~ad~V~~~~GTG~V~~aPah 124 (196)
T 2ajg_A 57 -----N------NPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPV-WAANFVLMEYGTGAVMAVPGH 124 (196)
T ss_dssp -----T------CHHHHHHHHHHHHCCCCGGGGGGSCCCEEEEEEEEECTTTCCEEEE-EEETTCCSSSSCSEEEECTTT
T ss_pred -----C------HHHHHHHHHHhhcccccceEEEeeeeCCEEcCCEEECCCCCCeeEE-EEeCCCccCCCCceEEECCCC
Confidence 0 12233332221 1123444434455899999999999999999 559999999999999999999
Q ss_pred CHHHHHHHHHcCCCcccccC---------CCCcccccc-----CccCCceecccchHHHHHHHHhcCceeee
Q 005759 227 GQEDYVTSLKYGLPILSPVD---------DEGKFTEEA-----GKFSGLDVLGDGNVAVVKYLDEQMSLIME 284 (678)
Q Consensus 227 g~~D~~~~~~~~l~~~~~vd---------~~G~~~~~~-----~~~~G~~v~~~~~~~ii~~L~~~g~l~~~ 284 (678)
|++||++|++||||++++|+ ++|+|++++ +.|.|+++. +|++.|++.|+++|++.++
T Consensus 125 ~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~-eA~~~Ii~~L~~~g~~~~~ 195 (196)
T 2ajg_A 125 DQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHE-AAFNAIADKLTAMGVGERK 195 (196)
T ss_dssp CHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHH-HHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecCcccCCeEHH-HHHHHHHHHHHHCCCceee
Confidence 99999999999999999996 478888764 579999995 8999999999999987653
No 16
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=289.03 Aligned_cols=180 Identities=18% Similarity=0.230 Sum_probs=146.2
Q ss_pred EEEEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccC
Q 005759 74 IYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKD 153 (678)
Q Consensus 74 ~~v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (678)
..++|++.+..+.+++.+. .++.+++||||||||||||+|+||||+++|++++..
T Consensus 8 ~~ikf~v~~~~~~~~~~~~--~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~----------------------- 62 (252)
T 2wfd_A 8 TLLKLKVLEPYPSKLSGLK--GKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETV----------------------- 62 (252)
T ss_dssp EEEEEEEESSCCGGGGGGT--TSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECT-----------------------
T ss_pred EEEEEEccCcchhhhhhcc--CCCCEEEEEECChHHHhhhheEEECCCCcEEEEEec-----------------------
Confidence 4579998765544433332 246899999999999999999999999999988752
Q ss_pred CCceEEEEeccchHHHHHHhC----CceEEEEeeecCcccCCEeeCCCCC-CcccEEEccCccccCCCCCceeccCCCCH
Q 005759 154 QKKVFIIVASDLVPTLEAKWG----TKLVIKKTLAGSDLENCRYVHPVDN-RQCPVVIGGDYITTESGTGLVHTAPGHGQ 228 (678)
Q Consensus 154 ~~~~~~iia~~~~~~l~~~~~----~~~~i~~~~~G~~l~g~~~~~P~~~-~~~pv~i~~~~V~~~~GTG~V~~aPahg~ 228 (678)
.++.||+++.+.+.+..+-. .+.+++.+++|.+|.|++|.||+++ +.+|| +.++||++++|||+||+|||||+
T Consensus 63 -~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~Pl~~~~~ipV-~~adyV~~~~GTG~V~~vPaHd~ 140 (252)
T 2wfd_A 63 -NGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYV-LPMLTIKEDKGTGVVTSVPSDSP 140 (252)
T ss_dssp -TSCEEEECHHHHHHHHTTTSSSSTTCCCEEEECCHHHHTTCEEECSSCSSSCEEE-EECSCCCSSSSCSSEEECTTTCH
T ss_pred -CCcEEEEhhhhHHHHHHHHhhccCcccEEEEEEEcccccCCEEEcCCCCCceeEE-EEeCcccCCCCCCeEEEcCCCCH
Confidence 14689999888877654421 2577889999999999999999998 57999 56999999999999999999999
Q ss_pred HHHH----------HHHHcCCC--------cccccCC---------------------------------------CCcc
Q 005759 229 EDYV----------TSLKYGLP--------ILSPVDD---------------------------------------EGKF 251 (678)
Q Consensus 229 ~D~~----------~~~~~~l~--------~~~~vd~---------------------------------------~G~~ 251 (678)
+||+ +|++|||| ++.+|+. +|+|
T Consensus 141 ~D~~~~~~l~~~~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~ 220 (252)
T 2wfd_A 141 DDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIM 220 (252)
T ss_dssp HHHHHHHHHHHCSHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHhhhccchhHHHHcCCCchhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceE
Confidence 9999 58889988 3444321 3666
Q ss_pred ccccCccCCceecccchHHHHHHHHhcCceee
Q 005759 252 TEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIM 283 (678)
Q Consensus 252 ~~~~~~~~G~~v~~~~~~~ii~~L~~~g~l~~ 283 (678)
+ .+.|.|+++. +|++.|++.|+++|.+..
T Consensus 221 ~--~~~~~Gl~v~-eA~~~Ii~~L~~~g~~~~ 249 (252)
T 2wfd_A 221 L--VDGFKGQKVQ-DVKKTIQKKMIDAGDALI 249 (252)
T ss_dssp C--STTSTTCBHH-HHHHHHHHHHHHTTSEEE
T ss_pred e--eeccCCeEHH-HHHHHHHHHHHHCCCCcc
Confidence 6 5789999995 999999999999998754
No 17
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=6.7e-35 Score=329.38 Aligned_cols=376 Identities=16% Similarity=0.191 Sum_probs=235.2
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCC-C-cccceE----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPE-G-HVSRSI---- 74 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~-~-~~~~~~---- 74 (678)
+++|++||+++| ++++|+++.|...++++|.+|+++|+||++.++|+|||+|++++++.|++.++ | .|++|.
T Consensus 101 ~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e 178 (536)
T 4dlp_A 101 RRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVE 178 (536)
T ss_dssp HHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCE
T ss_pred HHHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcce
Confidence 468999999988 88999999999999999999999999999999999999999999999996432 2 222221
Q ss_pred E-----EEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCC
Q 005759 75 Y-----AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGN 149 (678)
Q Consensus 75 ~-----v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~ 149 (678)
+ .+|+++++++.+.+.++. .|.. +.|+.. ++++.+
T Consensus 179 ~~~~~~~f~~l~~~~~~l~~~~~~------------~~~~--------i~P~~~--------------------~~~~~~ 218 (536)
T 4dlp_A 179 WVEEESYFFRLSAYQDKLLDLYEN------------NPGF--------IMPAER--------------------RNEIVS 218 (536)
T ss_dssp EEEEEEEEECGGGGHHHHHHHHHH------------CTTS--------EESHHH--------------------HHHHHH
T ss_pred EEeccceEEecHHHHHHHHHHHHh------------CCCc--------cCcHHH--------------------HHHHHH
Confidence 1 234554433322222110 1111 112210 001111
Q ss_pred cccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceecc--CCCC
Q 005759 150 VLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTA--PGHG 227 (678)
Q Consensus 150 ~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~a--Pahg 227 (678)
|++++ .+.+.|++..+ .| |.. .|... -.+ + ||+.|++.|...+. |.+.
T Consensus 219 ~l~~~-l~D~~ISR~~~-----~W----------------Gip--iP~~~--~~v-~---yvWfda~~~y~s~~~~~~~~ 268 (536)
T 4dlp_A 219 FVKSG-LKDLSISRTTF-----DW----------------GIP--VPGDE--KHV-M---YVWVDALTNYITALGYPDTT 268 (536)
T ss_dssp HHHTC-CCCEECEEC-------CC----------------SCB--CTTCT--TSE-E---CHHHHHHHHHHHTTTTTCTT
T ss_pred HHhcC-CCccCCccCCC-----cC----------------Cee--CCCCC--CCc-e---EEeeCCcHHHHHhcCCCCCc
Confidence 22211 23344444211 01 221 13221 122 2 55655544432111 1111
Q ss_pred HHHHHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHH--HHHHhcCceeeeeccccccccccCCCCCeEEcc
Q 005759 228 QEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA 305 (678)
Q Consensus 228 ~~D~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii--~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~ 305 (678)
++| .++.+..-.+.|+++. ..+.++ ..|...|.-.++..+.|.+
T Consensus 269 -~~~-----------------~~~~p~dv~~~G~D~~--~fh~~~~~a~l~a~g~~~~~~v~~hg~-------------- 314 (536)
T 4dlp_A 269 -DER-----------------WAYWPANAHIIGKDIS--RFHAVYWPAFLMSAQLPLPKRVFAHGF-------------- 314 (536)
T ss_dssp -SGG-----------------GGGCSCSEEEEEGGGH--HHHHTHHHHHHHHTTCCCCSCEEEECC--------------
T ss_pred -hHH-----------------HhhCCcceEEeechHH--HHHHHHHHHHHHHCCCCCCcEEEeeee--------------
Confidence 000 1111111246777764 233433 6777777544333333333
Q ss_pred cCcccccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhh-cCCCCceeeChhhhhHH--HHHHHHHHHHHHHHH-
Q 005759 306 TEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQM--SDIYRKLRGTLRYLL- 381 (678)
Q Consensus 306 t~QWFi~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~--~~~~~ki~n~~rf~l- 381 (678)
+-.+-.+|+++..+.+. |..++++||+|++|||+++ .++++|++|+++.+... ++++++++|++++++
T Consensus 315 ---v~~~G~KMSKS~GNvi~-----p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~ 386 (536)
T 4dlp_A 315 ---LFNRGEKMSKSVGNVID-----PFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLS 386 (536)
T ss_dssp ---EEC------------CC-----HHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred ---EeeCCceecccCCCCCC-----HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21233466667666554 5556779999999999987 78999999999988763 457788888775544
Q ss_pred ---hcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCC-
Q 005759 382 ---GNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGT- 457 (678)
Q Consensus 382 ---~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~- 457 (678)
+++.++.|. ...+...|+|++++++++++.+.++|++|+|++|++.+++|+ +++|+|++..|| |...+
T Consensus 387 ~~~~~~~~~~p~----~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~Y~~~~k~--w~l~~~ 458 (536)
T 4dlp_A 387 MIAKNCEGKVPQ----PGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV--AEANRYFAGQEP--WALRKT 458 (536)
T ss_dssp HHHHHSTTBCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCH--HHHHHH
T ss_pred HHHhhcCCCCCC----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhCCc--hhhcCC
Confidence 444443322 235678999999999999999999999999999999999998 589999999999 43222
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 005759 458 TSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 498 (678)
Q Consensus 458 ~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~ 498 (678)
+..++.+++.++.++++.+++||+|||||+|||||++|+..
T Consensus 459 ~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~ 499 (536)
T 4dlp_A 459 DPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVP 499 (536)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC
Confidence 33345677888999999999999999999999999999753
No 18
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=100.00 E-value=4.8e-33 Score=280.62 Aligned_cols=159 Identities=25% Similarity=0.301 Sum_probs=135.7
Q ss_pred CceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcccCCCceEEEEeccchHHHHHHhC--
Q 005759 97 DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG-- 174 (678)
Q Consensus 97 ~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~-- 174 (678)
+++++||||||||||||+||||||+..|++++.. .++.||+|+++++++..+..
T Consensus 79 ~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~------------------------~ge~~IvAe~l~e~l~~q~~~~ 134 (311)
T 3pz6_A 79 KVYLLAATLRPETMVGQTNCWVLPTGRYGAYYIN------------------------KDEVIIVSEHAAVNMAHQGLNN 134 (311)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEE------------------------TTEEEEEEHHHHHHHHTTTCSS
T ss_pred CEEEEEEECCchhhhhheEEEECCCCcEEEEEEC------------------------CCCEEEEeHHHHHHHHHhcccc
Confidence 4799999999999999999999999999999874 15789999999999876532
Q ss_pred ----CceEEEEeeecCcccCCEeeCCCCCC-cccEEEccCccccCCCCCceeccCCCCHHHHHHHHH-----------cC
Q 005759 175 ----TKLVIKKTLAGSDLENCRYVHPVDNR-QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLK-----------YG 238 (678)
Q Consensus 175 ----~~~~i~~~~~G~~l~g~~~~~P~~~~-~~pv~i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~-----------~~ 238 (678)
..++++.+++|++|.|++|.||++++ .+|| ++++||++++|||+||+|||||++||.+|++ ||
T Consensus 135 ~~~~~~~~vl~~~kG~eL~G~~~~hPl~~~~~ipI-l~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kyg 213 (311)
T 3pz6_A 135 NKPFGELDFISEISGSDLLLATVRAPLSPYEQIFV-LPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYG 213 (311)
T ss_dssp SCCTTCCCEEEEEEHHHHTTCEEECTTCSSSCEEE-EECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTT
T ss_pred cccCCCcEEEEEEEhHHhcCCEEECCCCCCCeeEE-EecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcC
Confidence 25789999999999999999999996 8999 6799999999999999999999999997666 77
Q ss_pred C---------CcccccC--CC-------------------------------------CccccccCccCCceecccchHH
Q 005759 239 L---------PILSPVD--DE-------------------------------------GKFTEEAGKFSGLDVLGDGNVA 270 (678)
Q Consensus 239 l---------~~~~~vd--~~-------------------------------------G~~~~~~~~~~G~~v~~~~~~~ 270 (678)
| +++.+|+ .. |.+. .+.|.|++| .+|++.
T Consensus 214 i~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G~~V-~eAk~~ 290 (311)
T 3pz6_A 214 VDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAGQSV-KDCKQS 290 (311)
T ss_dssp CCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTTSBH-HHHHHH
T ss_pred CchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCCeEH-HHHHHH
Confidence 4 5555553 11 3332 378999999 599999
Q ss_pred HHHHHHhcCceee
Q 005759 271 VVKYLDEQMSLIM 283 (678)
Q Consensus 271 ii~~L~~~g~l~~ 283 (678)
|.+.|.+.|....
T Consensus 291 i~~~L~~~g~a~~ 303 (311)
T 3pz6_A 291 CRDLLVQNNQCIV 303 (311)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHCCCceE
Confidence 9999999997654
No 19
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.97 E-value=4.8e-34 Score=322.03 Aligned_cols=381 Identities=14% Similarity=0.197 Sum_probs=228.1
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCC-Cc-cc-ce----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPE-GH-VS-RS---- 73 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~-~~-~~-~~---- 73 (678)
++++++||+++| ++++|+|+.|...++++|.+|+++|+||++.++|+|||+|+|++++.|+++.+ |. |+ +|
T Consensus 88 ~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v 165 (524)
T 2x1l_A 88 QRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPV 165 (524)
T ss_dssp HHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBE
T ss_pred HHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcc
Confidence 468999999877 88999999999999999999999999999999999999999999999997532 11 11 11
Q ss_pred EE-----EEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCC
Q 005759 74 IY-----AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPG 148 (678)
Q Consensus 74 ~~-----v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~ 148 (678)
.+ .+|+++++.+.+.+.++. .|.. +.|+.. ++.+.
T Consensus 166 ~~~~~~qwF~~l~~~~~~l~~~~~~------------~~~~--------i~p~~~--------------------~~~~~ 205 (524)
T 2x1l_A 166 TWTEEQTYFFRLSAYTDRLLALYEE------------HPEF--------IGPDAR--------------------RNEIV 205 (524)
T ss_dssp EEEEEEEEEECGGGSHHHHHHHHHH------------CGGG--------EESHHH--------------------HHHHH
T ss_pred eEEecCCeEeeHHHHHHHHHHHHHh------------CCCe--------eCCHHH--------------------HHHHH
Confidence 11 234555443332222210 0100 112210 00001
Q ss_pred CcccCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCcee--ccCCC
Q 005759 149 NVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVH--TAPGH 226 (678)
Q Consensus 149 ~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~--~aPah 226 (678)
.|+.. +.+.|.|++.+. .| |.. .|.. .--+ + ||+.+.+.+.+. .-|+-
T Consensus 206 ~~~~~-~l~Dw~iSRqr~-----~W----------------G~~--iP~~--~~~~-~---yvWfds~~~~~~~~g~p~~ 255 (524)
T 2x1l_A 206 SFVSG-GLKDLSISRTTF-----DW----------------GVP--VPDH--PDHV-M---YVWVDALTNYLTGVGFPDT 255 (524)
T ss_dssp HHHTT-CCCCEECEESSC-----CS----------------SCE--ETTE--EEEE-E---CHHHHHHTHHHHTTTTTCT
T ss_pred HHHHc-CCcccceECCCC-----Cc----------------Ccc--CCCC--CCCE-E---EEecCCchHHHHHcCCCCC
Confidence 11111 022344443211 01 221 1211 0011 1 444443322110 01321
Q ss_pred CHHHHHHHHHcCCCcccccCCCCccccccCccCCceecccchHHH--HHHHHhcCceeeeeccccccccccCCCCCeEEc
Q 005759 227 GQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAV--VKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFR 304 (678)
Q Consensus 227 g~~D~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~i--i~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r 304 (678)
...++. ++ .| +| -++.|++.. -.+.+ ...|...|.-.+...+.|.+
T Consensus 256 ~~~~~~---~~-~p----~d---------i~~~G~D~~--~fh~~~~~a~l~~~g~~~~~~v~~hG~------------- 303 (524)
T 2x1l_A 256 ESESFR---RY-WP----AD---------LHMIGKDII--RFHTVYWPAFLMSAGLPLPKRIFAHGW------------- 303 (524)
T ss_dssp TSHHHH---HH-CS----CS---------EEEEEGGGH--HHHHTHHHHHHHHHTCCCCSCEEEECC-------------
T ss_pred chHHHH---hh-CC----Ce---------EEEEeechh--HhHHHHHHHHHHHCCCCCCcEEEECcE-------------
Confidence 111111 11 11 11 144566653 12222 24555556433233333322
Q ss_pred ccCcccccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhh-cCCCCceeeChhhhhHHHH--HHHHHHHHHHHHH
Q 005759 305 ATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSD--IYRKLRGTLRYLL 381 (678)
Q Consensus 305 ~t~QWFi~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~~--~~~ki~n~~rf~l 381 (678)
+-.+-.+|+++..+.+. |..++++||+|++|||+++ +++.+|++|+++.+.+..+ +.++++|+++++.
T Consensus 304 ----v~~~G~KMSKS~GN~v~-----p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~ 374 (524)
T 2x1l_A 304 ----LLNRGEKMSKSIGNVVD-----PVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSL 374 (524)
T ss_dssp ----EEECSCSEETTTEESSC-----HHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHH
T ss_pred ----EEeCCcccCCcCCCCCC-----HHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233334333332 4445568999999999987 8899999999999877543 4566778776654
Q ss_pred hcccC-CCCCCccC-CCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhc-cccCCCC-
Q 005759 382 GNLHD-WRVGNSIS-YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD-RLYTGGT- 457 (678)
Q Consensus 382 ~nl~~-~~~~~~~~-~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~-rl~~~~~- 457 (678)
..+.+ +.. .++ ...+...|+|++++++++++.+.++|++|+|+.|++.+++|++ ++|+|++..|| +|+++..
T Consensus 375 ~~~~~~~~~--~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~--~~n~y~~~~k~w~l~~~~~~ 450 (524)
T 2x1l_A 375 SMVAKNLGA--AVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG--AANRYFSAQEPWVLRKSDAA 450 (524)
T ss_dssp HHHHHHSTT--BCCCCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHCHHHHTTCCSH
T ss_pred HHHHHhcCC--CCCCccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHhcCChhhhcCccc
Confidence 43321 111 111 2345789999999999999999999999999999999999995 68999999999 3333210
Q ss_pred -ChHhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 005759 458 -TSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 498 (678)
Q Consensus 458 -~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~ 498 (678)
+....++++.++.++++.+++||+|||||+|||||+.|+..
T Consensus 451 ~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 451 EDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 11223456677889999999999999999999999999753
No 20
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.97 E-value=4.5e-32 Score=307.83 Aligned_cols=154 Identities=19% Similarity=0.220 Sum_probs=123.1
Q ss_pred CCCCchhhhHHhhhc-CCC-CceeeChhhhhH--HHHHHHHHHHHHHHHHhcccC-CCCCCccCCCCCCHhHHHHHHHHH
Q 005759 336 PGYGADVLRLWVSSV-DYT-GDVMIGPQVLRQ--MSDIYRKLRGTLRYLLGNLHD-WRVGNSISYDDLPMIDQYALFQLE 410 (678)
Q Consensus 336 ~~yGaD~lRl~la~~-~~~-~D~~~s~~~l~~--~~~~~~ki~n~~rf~l~nl~~-~~~~~~~~~~~~~~~D~~il~~l~ 410 (678)
++||+|++|||+++. +.. +|++|+++.+.. .++++++++|++.++.+.+.+ +.+ .++. ...|+|++++++
T Consensus 361 ~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~--~~~~---~~~d~~ll~~l~ 435 (560)
T 3h99_A 361 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDG--VLAS---ELADPQLYKTFT 435 (560)
T ss_dssp HHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTT--BCCS---SCSCHHHHHHHH
T ss_pred HHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCC---ccccHHHHHHHH
Confidence 589999999999864 445 799999998864 567788899987655443322 221 1111 247999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCC-CChHhHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 005759 411 NIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG-TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAE 489 (678)
Q Consensus 411 ~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~-~~~~~r~~~~~~l~~~l~~l~~lLaPilP~~aE 489 (678)
++++.++++|++|+|++|++.+++|+ +++|+|++..|||..... .+..++.+++.++.++|+.+++||+|||||+||
T Consensus 436 ~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~ae 513 (560)
T 3h99_A 436 DAAEVIGEAWESREFGKAVREIMALA--DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTE 513 (560)
T ss_dssp HTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 99999999999999999999999998 579999999999533322 233445667788899999999999999999999
Q ss_pred HHHHhCC
Q 005759 490 DVWQNLP 496 (678)
Q Consensus 490 Eiw~~l~ 496 (678)
|||++|+
T Consensus 514 ei~~~L~ 520 (560)
T 3h99_A 514 RAEAFLN 520 (560)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 9999997
No 21
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.97 E-value=1.4e-33 Score=316.32 Aligned_cols=374 Identities=17% Similarity=0.186 Sum_probs=204.4
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEE-----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY----- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~----- 75 (678)
+++|++||+++| ++++|+||.|.+.++++|.+|+++|+||++.++|+|||.|+|++++.|++. .|+|++|..
T Consensus 81 ~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~-~~~c~~~~~~~~~~ 157 (497)
T 2csx_A 81 KKLWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE-DHTCPIHQKKCEYI 157 (497)
T ss_dssp HHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------------------------------
T ss_pred HHHHHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhcc-CCCCCCCCCCCeEE
Confidence 468999999766 689999999999999999999999999999999999999999999999863 145554432
Q ss_pred ----EEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcc
Q 005759 76 ----AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVL 151 (678)
Q Consensus 76 ----v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~ 151 (678)
.+|+++++++.+++.++. .|.. +.|+.. ++.+..|+
T Consensus 158 ~~~~wf~~l~~~~~~l~~~~~~------------~~~~--------~~p~~~--------------------~~~~~~~l 197 (497)
T 2csx_A 158 KEPSYFFRLSKYQDKLLELYEK------------NPEF--------IQPDYR--------------------RNEIISFV 197 (497)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH------------CTTS--------BCSHHH--------------------HHHHHHHH
T ss_pred ecCceEEEcHHHHHHHHHHHHh------------CCCe--------eCcHHH--------------------HHHHHHHH
Confidence 235555443333222211 1111 112110 00000111
Q ss_pred cCCCceEEEEeccchHHHHHHhCCceEEEEeeecCcc-cCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHHH
Q 005759 152 KDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDL-ENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQED 230 (678)
Q Consensus 152 ~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~l-~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~D 230 (678)
+. +.+.|.|++. +.++ -|.. .|.. .--+ + ||+.|++.+..-..|. + ++
T Consensus 198 ~~-~~~Dw~isR~--------------------~~~~~WG~~--iP~~--~~~~-i---~vW~ds~~~~~s~~~~-~-~~ 246 (497)
T 2csx_A 198 KQ-GLKDLSVTRP--------------------RSRVKWGIP--VPFD--PEHT-I---YVWFDALFNYISALED-K-VE 246 (497)
T ss_dssp HH-CCCCEECEEE--------------------TTTCCSSEE--ETTE--EEEE-E---CSHHHHHTHHHHTTTT-T-HH
T ss_pred hc-CCcccccccc--------------------CCCCCCcee--cCCC--CCce-E---EEecccchhhcccCCC-c-ch
Confidence 00 0122333320 0000 0211 1211 0011 2 4566655543222211 0 00
Q ss_pred HHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHH--HHHHhcCceeeeeccccccccccCCCCCeEEcccCc
Q 005759 231 YVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQ 308 (678)
Q Consensus 231 ~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii--~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~Q 308 (678)
++ +| +| -++.|++.. . .+.+. ..|...|.-.+...+.|.+
T Consensus 247 -----~~-~p----~d---------i~~~G~D~~-~-~H~~~~~a~l~~~g~~~~~~~~~~G~----------------- 288 (497)
T 2csx_A 247 -----IY-WP----AD---------LHLVGKDIL-R-FHTVYWPAFLMSLGYELPKKVFAHGW----------------- 288 (497)
T ss_dssp -----HH-CS----CS---------CEEEEGGGH-H-HHHTHHHHHHHHHTCCCCSCEEEECC-----------------
T ss_pred -----hh-CC----ce---------EEEeecchh-H-hHHHHHHHHHHHcCCCCCcEEEECcE-----------------
Confidence 11 11 11 245566653 1 22222 4455545422222222222
Q ss_pred ccccchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhh-cCCCCceeeChhhhhHHH--HHHHHHHHHHHHHHhccc
Q 005759 309 WFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMS--DIYRKLRGTLRYLLGNLH 385 (678)
Q Consensus 309 WFi~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~--~~~~ki~n~~rf~l~nl~ 385 (678)
+-.+-.+|+++..+.+. |..++++||+|++|||+++ +++.+|++|+++.+.+.. ++.++++|++.++.+.+.
T Consensus 289 v~~~G~KMSKS~GN~i~-----~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~ 363 (497)
T 2csx_A 289 WTVEGKKMSKTLGNVVD-----PYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAH 363 (497)
T ss_dssp EESSSSBCCTTTTCCCC-----HHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred EEeCCceeCCcCCCCCC-----HHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233344333322 4445568999999999987 789999999999887643 345677777766555443
Q ss_pred CCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHH
Q 005759 386 DWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSC 465 (678)
Q Consensus 386 ~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~ 465 (678)
++..+ .++ ...|+|++++++++++.+.++|++|+|+.|++.+++|+. ++|+|++..||+......+..+.+++
T Consensus 364 ~~~~~-~~~----~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~--~~n~y~~~~k~~~~~~~~~~~~~~~~ 436 (497)
T 2csx_A 364 KFLGG-EVS----GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTS--YLNKYVDEKQPWALNKERKKEELQKV 436 (497)
T ss_dssp HHSTT-CBC----CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHHHHHHCHHHHHTTSCHHHHHHH
T ss_pred HhcCC-CCC----chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HHHHHHHhcCchhhcccccHHHHHHH
Confidence 32111 111 346899999999999999999999999999999999994 69999999999432221222233467
Q ss_pred HHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 005759 466 QTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 498 (678)
Q Consensus 466 ~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~ 498 (678)
+.++.++++.+++||+|||||+|||||+.|+..
T Consensus 437 ~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 437 LYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 778889999999999999999999999999753
No 22
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.96 E-value=7.3e-33 Score=310.84 Aligned_cols=375 Identities=17% Similarity=0.180 Sum_probs=223.7
Q ss_pred ChHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeCCcceeccCCCCccccccccccCCCcccceEE-----
Q 005759 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY----- 75 (678)
Q Consensus 1 k~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~~~pV~wcp~~~TaLae~Evey~~~~~~~~~~----- 75 (678)
+++|++||+++| ++++|+||.|.+.++++|.+|+++|+||++.++|+|||.|+|++++.|+. +|+|++|..
T Consensus 79 ~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~--~g~c~~~~~~v~~~ 154 (500)
T 2d5b_A 79 KRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV--EGLCPIHGRPVERR 154 (500)
T ss_dssp HHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB--TTBCTTTCSBCEEE
T ss_pred HHHHHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc--CCcCCCCCCeeeEE
Confidence 368999999877 68999999999999999999999999999999999999999999999976 455654421
Q ss_pred ----EEEEeeeCCCCCcccccccCCCceeEEeecCcceeccccEEEECCCCcEEEEEecccccCCCCCccCCCCCCCCcc
Q 005759 76 ----AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVL 151 (678)
Q Consensus 76 ----v~f~l~~~~~~~~~~l~~~~~~~~~~iwTT~P~Tl~~n~ai~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~ 151 (678)
.+|+++++++.+.+.++. .|.. +.|+.. ++.+..|+
T Consensus 155 ~~~~wf~~l~~~~~~l~~~~~~------------~~~~--------~~p~~~--------------------~~~~~~~l 194 (500)
T 2d5b_A 155 KEGNYFFRMEKYRPWLQEYIQE------------NPDL--------IRPEGY--------------------RNEVLAML 194 (500)
T ss_dssp EEEEEEECGGGGHHHHHHHHHT------------CTTS--------EESHHH--------------------HHHHHHHH
T ss_pred ecCceEEEcHHHHHHHHHHHHh------------CCCe--------eCCHHH--------------------HHHHHHHH
Confidence 235555443333222211 0110 111110 00000111
Q ss_pred cCCCceEEEEec--cchHHHHHHhCCceEEEEeeecCcccCCEeeCCCCCCcccEEEccCccccCCCCCceeccCCCCHH
Q 005759 152 KDQKKVFIIVAS--DLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQE 229 (678)
Q Consensus 152 ~~~~~~~~iia~--~~~~~l~~~~~~~~~i~~~~~G~~l~g~~~~~P~~~~~~pv~i~~~~V~~~~GTG~V~~aPahg~~ 229 (678)
+. +.+.|.|++ ... .| |.. .|.. .--+ + ||+.+++.+.+-..--|...
T Consensus 195 ~~-~l~Dw~iSRp~~~~-----~W----------------G~p--iP~~--~~~v-~---~vWfds~~~y~~~~g~~~~~ 244 (500)
T 2d5b_A 195 AE-PIGDLSISRPKSRV-----PW----------------GIP--LPWD--ENHV-T---FVWFDALLNYVSALDYPEGE 244 (500)
T ss_dssp TS-CCCCEECEEETTTC-----CS----------------SCE--ETTE--EEEE-E---CHHHHHHTHHHHTTTTTTCH
T ss_pred hc-CCCCeecccccccc-----cC----------------ccc--cCCC--CCCe-e---EEccccchhhHHHcCCCCCc
Confidence 11 012344433 100 01 211 1211 0011 2 45555544322110001111
Q ss_pred HHHHHHHcCCCcccccCCCCccccccCccCCceecccchHHHH--HHHHhcCceeeeeccccccccccCCCCCeEEcccC
Q 005759 230 DYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATE 307 (678)
Q Consensus 230 D~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ii--~~L~~~g~l~~~~~~~h~yp~~wr~~~pvi~r~t~ 307 (678)
++ .++ .| ..-++.|.+.. . .+.+. ..|...|.-.+...+.|.+
T Consensus 245 ~~---~~~-~p-------------~di~~~G~D~~-~-fh~~~~~a~~~~~g~~~~~~v~~~G~---------------- 289 (500)
T 2d5b_A 245 AY---RTF-WP-------------HAWHLIGKDIL-K-PHAVFWPTMLKAAGIPMYRHLNVGGF---------------- 289 (500)
T ss_dssp HH---HHH-GG-------------GEEEEEEGGGH-H-HHHTHHHHHHHHHTCCCCSEEEEECC----------------
T ss_pred hH---HHc-CC-------------CeEEEEeechh-h-hHHHHHHHHHHHcCCCCCcEEEECce----------------
Confidence 11 010 01 01134566653 1 22222 4555555422222222322
Q ss_pred cccc-cchHHHHHHHHHhhcCcccCCCCCCCCCchhhhHHhhh-cCCCCceeeChhhhhHHH--HHHHHHHHHHHHHHhc
Q 005759 308 QWFA-SVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMS--DIYRKLRGTLRYLLGN 383 (678)
Q Consensus 308 QWFi-~~~~~~~~~~~~i~~v~~~P~~~~~~yGaD~lRl~la~-~~~~~D~~~s~~~l~~~~--~~~~ki~n~~rf~l~n 383 (678)
+-. +-.+|+++..+.+. |..++++||+|+||||+++ +++.+|++|+++.+.+.. ++.++++|+..++...
T Consensus 290 -v~~~~G~KMSKS~GN~i~-----p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~ 363 (500)
T 2d5b_A 290 -LLGPDGRKMSKTLGNVVD-----PFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAM 363 (500)
T ss_dssp -EECTTSSCCCTTTTCCCC-----HHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred -EEeCCCCcccccCCCCCC-----HHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22234444333332 4445668999999999987 789999999999887643 3456777776554433
Q ss_pred ccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhccccCCCCChHhHH
Q 005759 384 LHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRR 463 (678)
Q Consensus 384 l~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~ 463 (678)
+.++.. ..++.. .++|++++++++++.+.++|++|+|+.|++.+++|+. ++|+|++..||+..... +..+.+
T Consensus 364 ~~~~~~-~~~~~~----~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~--~~n~y~~~~k~w~~~~~-~~~~~~ 435 (500)
T 2d5b_A 364 LFRFAE-GRIPEP----VAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVK--ALNRYINEKKPWELFKK-EPEEAR 435 (500)
T ss_dssp HHHHST-TBCCCC----CCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHCHHHHHHH-CHHHHH
T ss_pred HHHhcC-CCCCch----hHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HHHHHHHhcCchhhccC-cHHHHH
Confidence 222111 111111 1489999999999999999999999999999999994 69999999999533211 122334
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 005759 464 SCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 498 (678)
Q Consensus 464 ~~~~~l~~~l~~l~~lLaPilP~~aEEiw~~l~~~ 498 (678)
+++.++.++++.++++|+|||||+|||||++|+..
T Consensus 436 ~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~ 470 (500)
T 2d5b_A 436 AVLYRVVEGLRIASILLTPAMPDKMAELRRALGLK 470 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCC
Confidence 67778889999999999999999999999999753
No 23
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.00 E-value=2.8e-10 Score=124.65 Aligned_cols=113 Identities=8% Similarity=-0.023 Sum_probs=72.5
Q ss_pred ccchHHHHHHHHHhhcCcccCCCCCCC-CCchhhhHHhhhcCCCCceeeChhhhhHHHHH----HHHHHHHHHHHHhccc
Q 005759 311 ASVEGFRQAAMDAIGQVKWVPPQEAPG-YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDI----YRKLRGTLRYLLGNLH 385 (678)
Q Consensus 311 i~~~~~~~~~~~~i~~v~~~P~~~~~~-yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~----~~ki~n~~rf~l~nl~ 385 (678)
++-.+|.+++.+.+. |..++++ ||+|++|||+++..+.+|++|+++.+....+. +++|+|+++.+.....
T Consensus 295 ~~G~KMSKSlGN~it-----~~dll~~gyg~d~lR~~lls~~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~ 369 (501)
T 3sp1_A 295 MDYNKMSKSRGNFIT-----VKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDL 369 (501)
T ss_dssp CC----------CCC-----HHHHHHTTCCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred eCCeEccccCCCcCC-----HHHHHhcCCCHHHHHHHHHhccCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhc
Confidence 344577777666543 4445667 99999999999989999999999999999888 9999998875321110
Q ss_pred CCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHH
Q 005759 386 DWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFII 437 (678)
Q Consensus 386 ~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e-~~~f~~a~~~i~~f~~ 437 (678)
....... . ... ...+..+...+.++|+ +++...|+..+++++.
T Consensus 370 ~~~~~~~--~-~~~------~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~ 413 (501)
T 3sp1_A 370 NTLNKDL--K-NFG------FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIK 413 (501)
T ss_dssp HHHHSCT--T-SCS------SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHH
T ss_pred ccccccc--c-chh------hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 0000000 0 000 1234566778889998 7999999999998884
No 24
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=98.96 E-value=6.7e-10 Score=120.76 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=72.6
Q ss_pred cchHHHHHHHHHhhcCcccCCCCCCC-CCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 005759 312 SVEGFRQAAMDAIGQVKWVPPQEAPG-YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG 390 (678)
Q Consensus 312 ~~~~~~~~~~~~i~~v~~~P~~~~~~-yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~ 390 (678)
+-.+|.++..+.+. |..++++ ||+|++|||+++.++.+|++|+++.+....+.+++++|+++++ .+
T Consensus 288 ~G~KMSKS~GN~v~-----~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~----~~---- 354 (414)
T 3c8z_A 288 DGHKMSKSRGNLVL-----VSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALP----EA---- 354 (414)
T ss_dssp ------------CB-----HHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS----CB----
T ss_pred CCeEcccccCCcCC-----HHHHhhccCCcchheeEEEecCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc----cc----
Confidence 33456666665544 5556677 9999999999999999999999999999999999999987543 10
Q ss_pred CccCCCCCCHhHHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhhhhh
Q 005759 391 NSISYDDLPMIDQYALFQLENIVKNIRESY-ESYQFFKIFQIIQRFIIVDLSNF 443 (678)
Q Consensus 391 ~~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~a~~~i~~f~~~~l~n~ 443 (678)
+ .++++.+++.++| ++|+|++|++.|++|+.. .|.
T Consensus 355 ---~-------------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~--~n~ 390 (414)
T 3c8z_A 355 ---P-------------DATDVIARVRQYLADDLDTPKALAALDGWCTD--ALS 390 (414)
T ss_dssp ---S-------------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHH--HHH
T ss_pred ---h-------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHh
Confidence 0 1256788899999 799999999999999954 554
No 25
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=98.90 E-value=2.5e-09 Score=117.60 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=77.6
Q ss_pred CCCCCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHH
Q 005759 331 PPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLE 410 (678)
Q Consensus 331 P~~~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~ 410 (678)
|..++++||+|++|||+++..+.+|++|+++.+....+.+++++|+++++ .. .++ . | .+.
T Consensus 277 ~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n~~~~~----~~-----~~~-----~-d-----~l~ 336 (461)
T 1li5_A 277 VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGT----DK-----TVA-----P-A-----GGE 336 (461)
T ss_dssp HHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHHHHTTC----CT-----TSC-----C-C-----SCH
T ss_pred hhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh----hc-----CCC-----H-H-----HHH
Confidence 44466789999999999998999999999999999999999999988653 11 111 1 2 356
Q ss_pred HHHHHHHHHH-HhcccHHHHHHHHHHHHHhhhhhHHHh
Q 005759 411 NIVKNIRESY-ESYQFFKIFQIIQRFIIVDLSNFYFDV 447 (678)
Q Consensus 411 ~~~~~v~~~~-e~~~f~~a~~~i~~f~~~~l~n~Y~~~ 447 (678)
++.+.+.++| ++|+++.|++.+++|+. ..|.|++.
T Consensus 337 ~~~~~~~~am~dd~n~~~Al~~l~~l~~--~~N~~~~~ 372 (461)
T 1li5_A 337 AFEARFIEAMDDDFNTPEAYSVLFDMAR--EVNRLKAE 372 (461)
T ss_dssp HHHHHHHHHHHBTSCHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH--HHHHHHhc
Confidence 7788899999 89999999999999995 47999864
No 26
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=98.83 E-value=1e-08 Score=111.68 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=72.8
Q ss_pred CCCCCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHH
Q 005759 331 PPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLE 410 (678)
Q Consensus 331 P~~~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~ 410 (678)
|..++++||+|++|||+++..+.+|++|+++.+..+.+.+++|+|+++++.. .. . + .+.
T Consensus 280 ~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~~----~~------~------~-----~~~ 338 (462)
T 3tqo_A 280 IREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPV----VN------H------E-----KTS 338 (462)
T ss_dssp HHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHTTCCC---------------------------C
T ss_pred HHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHHHHHHHHhhh----cc------c------h-----hHH
Confidence 3335568999999999999999999999999999999999999999876421 00 0 0 134
Q ss_pred HHHHHHHHHHH-hcccHHHHHHHHHHHHHhhhhhHHH
Q 005759 411 NIVKNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYFD 446 (678)
Q Consensus 411 ~~~~~v~~~~e-~~~f~~a~~~i~~f~~~~l~n~Y~~ 446 (678)
.+...+.++|+ +++...|+..+++++.. .|.+++
T Consensus 339 ~~~~~~~~a~~dD~nt~~a~~~l~~~~~~--~n~~~~ 373 (462)
T 3tqo_A 339 SYTDRFYEAMDDDFNTPIAFALLFEMVRE--INRFRD 373 (462)
T ss_dssp HHHHHHHHHHTBTCCHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHH--Hhhhhc
Confidence 56678888998 79999999999999853 676654
No 27
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=98.56 E-value=2.1e-08 Score=113.75 Aligned_cols=112 Identities=8% Similarity=-0.012 Sum_probs=78.3
Q ss_pred CCCchhhhHHhhhcCCCCceeeChhhhhHHHH-HHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHH
Q 005759 337 GYGADVLRLWVSSVDYTGDVMIGPQVLRQMSD-IYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKN 415 (678)
Q Consensus 337 ~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~-~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~ 415 (678)
.+|+|++||++++..+.+|++|+++.+..... ....+.++..++.+.+.+.............+.++-++..+.++...
T Consensus 436 ~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~ 515 (592)
T 1iq0_A 436 MVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEA 515 (592)
T ss_dssp HHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHH
T ss_pred hhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHH
Confidence 39999999999988889999999988764322 23344444433333332211100000111245677888999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhhhc
Q 005759 416 IRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 450 (678)
Q Consensus 416 v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~K~ 450 (678)
+.+++++++++.+++.+++++. ..|.|++..+|
T Consensus 516 v~~a~~~~~p~~~~~yl~~La~--~fn~fy~~~~~ 548 (592)
T 1iq0_A 516 VLEAAEERTPHVLAQYLLDLAA--SWNAYYNAREN 548 (592)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HHHHHHHCEET
T ss_pred HHHHHHhCCHHHHHHHHHHHHH--HHHHHHHhccc
Confidence 9999999999999999999984 57888888865
No 28
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=98.34 E-value=8.4e-08 Score=109.30 Aligned_cols=108 Identities=9% Similarity=0.057 Sum_probs=75.4
Q ss_pred CCCchhhhHHhhhcCCCCceeeChhhhhHH--------HHHHHHHHHHHHHHHhcccCCCC-----CCccCCCCCCHhHH
Q 005759 337 GYGADVLRLWVSSVDYTGDVMIGPQVLRQM--------SDIYRKLRGTLRYLLGNLHDWRV-----GNSISYDDLPMIDQ 403 (678)
Q Consensus 337 ~yGaD~lRl~la~~~~~~D~~~s~~~l~~~--------~~~~~ki~n~~rf~l~nl~~~~~-----~~~~~~~~~~~~D~ 403 (678)
.+|+|++||++++..+.+|++|+++.+... ...+.++.+.+|-.... +... ..........+.++
T Consensus 470 ~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~--~~~~~~~~~~~~~~~~l~~~~e~ 547 (629)
T 2zue_A 470 KVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEE--GIKVDPETLFKNADFTKLSERER 547 (629)
T ss_dssp HHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHT--TCCCCHHHHHHHCCCSSCCHHHH
T ss_pred hcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhcc--ccccccccccccccccCCCHHHH
Confidence 499999999999988899999999877531 22345565555432110 1000 00000111256778
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHHhh
Q 005759 404 YALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA 448 (678)
Q Consensus 404 ~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~~~ 448 (678)
-++..+.++...+.+++++++++.++..+++++. ..|.|.+..
T Consensus 548 ~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~--~fn~fy~~~ 590 (629)
T 2zue_A 548 ELVIMLSKFPRIVEQAGKDVKPHLIAWFANELAS--LFNKFYMDH 590 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHH--HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHHHHHhc
Confidence 8999999999999999999999999999999985 355666654
No 29
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=98.14 E-value=9.5e-06 Score=88.75 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=82.2
Q ss_pred CCCCCCchhhhHHhhhcCCCCceeeChhhhhHHHH---------HHHHHHHHHHHHHhcccCCCCCCccCCCCCCHhHHH
Q 005759 334 EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSD---------IYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQY 404 (678)
Q Consensus 334 ~~~~yGaD~lRl~la~~~~~~D~~~s~~~l~~~~~---------~~~ki~n~~rf~l~nl~~~~~~~~~~~~~~~~~D~~ 404 (678)
+++++|+|++|||+++..+.+|++|+++.+....+ .+.++.+++|... ..++.+. ..+...+...|++
T Consensus 299 ll~~~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~--~~~~~~~-~~~~~~L~~~e~~ 375 (464)
T 3fnr_A 299 VVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAG--KKIDDVM-KADLQSLNQDGVN 375 (464)
T ss_dssp HHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTT--CCTTTST-TCCCTTCCHHHHH
T ss_pred HHhhccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh--ccCCCcc-ccChhhCChHHHH
Confidence 44579999999999998899999999998865322 3567888777632 1222211 1123355666999
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHHH
Q 005759 405 ALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 446 (678)
Q Consensus 405 il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~~ 446 (678)
++.++.++.+.+.+++++|+++.+++.+++|+. .++++|-+
T Consensus 376 Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~-~~n~fY~~ 416 (464)
T 3fnr_A 376 LLFEALNLKAVLNDAFEARALQKIPDYLKNLAA-NFHKFYNE 416 (464)
T ss_dssp HHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHh
Confidence 999999999999999999999999999999985 46665543
No 30
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=96.05 E-value=0.0018 Score=71.94 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=49.2
Q ss_pred cchHHHHHHHHhcCceeeeecc-----------cc---ccccccCCCCCeEEcccCcccccchHHHHHHHHHhhc
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPY-----------EH---KYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 326 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~-----------~h---~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~ 326 (678)
+.-..+++.|.++|++...+.- .. ..++|||||.|++++.++|||++++++++.+++.+++
T Consensus 102 ~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~ 176 (500)
T 2d5b_A 102 KVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQE 176 (500)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHh
Confidence 4556788999999998765311 11 1267999999999999999999999999999998875
No 31
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=94.67 E-value=0.013 Score=64.74 Aligned_cols=61 Identities=7% Similarity=-0.005 Sum_probs=35.6
Q ss_pred cchHHHHHHHHhcCceeeeeccc------------ccc---ccccCCCCCeEEcccCcccccchHHHHHHHHHhhc
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYE------------HKY---PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 326 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~------------h~y---p~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~ 326 (678)
+.-..+++.|.++|++...+.-. +.. ++||||+.|++++.++|||++++++++.+++.+++
T Consensus 104 ~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~ 179 (497)
T 2csx_A 104 KFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEK 179 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHh
Confidence 34567889999999987653111 111 78999999999999999999999999999988875
No 32
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=94.13 E-value=0.033 Score=62.06 Aligned_cols=61 Identities=8% Similarity=0.217 Sum_probs=47.1
Q ss_pred cchHHHHHHHHhcCceeeeeccc------ccc------------cccc-CCCCCeEEcccCcccccchHHHHHHHHHhhc
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYE------HKY------------PYDW-RTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 326 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~------h~y------------p~~w-r~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~ 326 (678)
+.-..+++.|.++|++...+.-. ..+ +.|+ |||+|++++.++|||++++++++.+++.+++
T Consensus 111 ~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~ 190 (524)
T 2x1l_A 111 EASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEE 190 (524)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHh
Confidence 44567889999999886542110 001 2477 9999999999999999999999999998873
No 33
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=93.96 E-value=0.038 Score=61.67 Aligned_cols=60 Identities=8% Similarity=0.073 Sum_probs=46.8
Q ss_pred chHHHHHHHHhcCceeeeeccc------------ccc------ccccCCCCCeEEcccCcccccchHHHHHHHHHhhc
Q 005759 267 GNVAVVKYLDEQMSLIMEEPYE------------HKY------PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 326 (678)
Q Consensus 267 ~~~~ii~~L~~~g~l~~~~~~~------------h~y------p~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~ 326 (678)
.-..+++.|.++|.+.....-. +.. -+|++||.|++++.++|||++++++++.+++++++
T Consensus 125 ~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~ 202 (536)
T 4dlp_A 125 ASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYEN 202 (536)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHh
Confidence 4567889999999886543110 000 15899999999999999999999999999988875
No 34
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=90.31 E-value=0.15 Score=59.90 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=37.1
Q ss_pred cchHHHHHHHHhcCceeeeeccc--------------cccccccCCCCCeEEcccCcccccchHHHHHHHHHhhcC
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYE--------------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQV 327 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~--------------h~yp~~wr~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v 327 (678)
+.-..++..|.++|++....... -..+.||||+.||+++..+|||++++++++++++.++.+
T Consensus 154 ~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~ 229 (880)
T 4arc_A 154 RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKL 229 (880)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhc
Confidence 45667888999999887654321 012679999999999999999999999999999988765
No 35
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=88.47 E-value=0.33 Score=54.42 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=45.4
Q ss_pred cchHHHHHHHHhcCceeeeecccccc---------------------ccc---cCCCCCeEEcccCcccccchHHHHHHH
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPYEHKY---------------------PYD---WRTKKPTIFRATEQWFASVEGFRQAAM 321 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~~h~y---------------------p~~---wr~~~pvi~r~t~QWFi~~~~~~~~~~ 321 (678)
+.-+.+++.|.++|.+...+. ..-| ..| .+||+|++++.++|||++++++++.++
T Consensus 125 ~~v~~~~~~L~~~G~iy~~~~-~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~ 203 (564)
T 3kfl_A 125 KLVQDIWKKLAAKGDIYLGKY-EGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLL 203 (564)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-EEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeee-eEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHH
Confidence 345678899999998865421 1111 122 368999999999999999999999999
Q ss_pred HHhhc
Q 005759 322 DAIGQ 326 (678)
Q Consensus 322 ~~i~~ 326 (678)
+++++
T Consensus 204 ~~~~~ 208 (564)
T 3kfl_A 204 KYFHD 208 (564)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
No 36
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=87.79 E-value=0.15 Score=56.63 Aligned_cols=43 Identities=9% Similarity=0.068 Sum_probs=37.0
Q ss_pred CCCCCCchhhhHHhhhcCCCCceeeChh-hhhHHHHHHHHHHHH
Q 005759 334 EAPGYGADVLRLWVSSVDYTGDVMIGPQ-VLRQMSDIYRKLRGT 376 (678)
Q Consensus 334 ~~~~yGaD~lRl~la~~~~~~D~~~s~~-~l~~~~~~~~ki~n~ 376 (678)
+.+.||+|++|+|++...+.+|.+|+.+ .+....+.++++++.
T Consensus 293 ~~~~~~pdalR~~l~~~~~~~~~~fs~~~~l~~~~~~~~~~~~~ 336 (523)
T 1irx_A 293 LYEVLEPGLVRFIYARHRPNKEIKIDLGLGILNLYDEFEKVERI 336 (523)
T ss_dssp HHTTSCHHHHHHHHHSSCTTSCEEECCSTTHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHhcCCCCCceeCcchhHHHHHHHHHHHHHH
Confidence 4456999999999998888999999999 888888788888774
No 37
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=84.97 E-value=1.7 Score=48.97 Aligned_cols=102 Identities=9% Similarity=0.029 Sum_probs=70.9
Q ss_pred CchhhhHHhhhcCCCCceeeChhhhhHH--------HHHHHHHHHHHHHHHhcccCCCCC--CccCCCCC-CHhHHHHHH
Q 005759 339 GADVLRLWVSSVDYTGDVMIGPQVLRQM--------SDIYRKLRGTLRYLLGNLHDWRVG--NSISYDDL-PMIDQYALF 407 (678)
Q Consensus 339 GaD~lRl~la~~~~~~D~~~s~~~l~~~--------~~~~~ki~n~~rf~l~nl~~~~~~--~~~~~~~~-~~~D~~il~ 407 (678)
|..++||+.++..+.+|++|+++.+... .-.+.++.+++|-.. +..+. ...+...+ .+.++-++.
T Consensus 454 gi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~----~~~~~~~~~~~~~~l~~~~e~~L~~ 529 (607)
T 1f7u_A 454 GISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNAS----GITQEKWINADFSLLKEPAAKLLIR 529 (607)
T ss_dssp HHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTT----TSCHHHHTTSCGGGCCSHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhc----CCCcccccccchhhcCCHHHHHHHH
Confidence 4468999999999999999999877532 223346666555321 11110 00011112 456778889
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhHH
Q 005759 408 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYF 445 (678)
Q Consensus 408 ~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~l~n~Y~ 445 (678)
.|.++...+.+++++++.+.++..+++++. .+..+|=
T Consensus 530 ~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~-~fn~fY~ 566 (607)
T 1f7u_A 530 LLGQYPDVLRNAIKTHEPTTVVTYLFKLTH-QVSSCYD 566 (607)
T ss_dssp HHTTHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999985 4666663
No 38
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=82.80 E-value=0.87 Score=53.65 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=49.6
Q ss_pred cchHHHHHHHHhcCceeeeecc------------cc--ccccccC-CCCCeEEcccCcccccchHHHHHHHHHhhcCc
Q 005759 266 DGNVAVVKYLDEQMSLIMEEPY------------EH--KYPYDWR-TKKPTIFRATEQWFASVEGFRQAAMDAIGQVK 328 (678)
Q Consensus 266 ~~~~~ii~~L~~~g~l~~~~~~------------~h--~yp~~wr-~~~pvi~r~t~QWFi~~~~~~~~~~~~i~~v~ 328 (678)
+.-..++..|.++|++...... .+ .+++||| |+.|++.+..+|||++++++++.+++.++...
T Consensus 134 ~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~ 211 (878)
T 2v0c_A 134 RWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLN 211 (878)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCB
T ss_pred HHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcC
Confidence 4456788999999998754321 11 2478999 99999999999999999999999888876543
No 39
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=52.44 E-value=2.6 Score=31.78 Aligned_cols=28 Identities=25% Similarity=0.669 Sum_probs=20.8
Q ss_pred eCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhcc
Q 005759 633 RAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAV 668 (678)
Q Consensus 633 ~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~ 668 (678)
++.-.+|++|..|+-. ..|+.|-.....
T Consensus 3 ks~mr~C~~CgvYTLk--------~~CP~CG~~T~~ 30 (60)
T 2apo_B 3 EMRMKKCPKCGLYTLK--------EICPKCGEKTVI 30 (60)
T ss_dssp CCCCEECTTTCCEESS--------SBCSSSCSBCBC
T ss_pred hhhceeCCCCCCEecc--------ccCcCCCCcCCC
Confidence 3556799999999873 579998665543
No 40
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=39.79 E-value=6.6 Score=28.17 Aligned_cols=31 Identities=16% Similarity=0.473 Sum_probs=18.0
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCChhhHHHhccCCc
Q 005759 635 EGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPI 671 (678)
Q Consensus 635 ~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~~~~ 671 (678)
+.=||+.|-++.+.. ..-|.||-.+=..-+|
T Consensus 10 D~WkC~~C~k~N~Pl------~ryC~rCwaLRk~Wlp 40 (53)
T 2cr8_A 10 DEWQCTECKKFNSPS------KRYCFRCWALRKDWYS 40 (53)
T ss_dssp CCEECSSSCCEECSS------CCBCTTTCCBCCCCCC
T ss_pred ceeecccccccCCCc------cchhHHHHHhhcccCC
Confidence 445677777776642 3567777655444333
No 41
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=37.30 E-value=22 Score=25.08 Aligned_cols=31 Identities=26% Similarity=0.656 Sum_probs=16.2
Q ss_pred CCCCCCcccccCCCCCCCCCCCChhh-HHHhc
Q 005759 637 SKCERCWNYSTQVGSFVEHPTLCSRC-YEVLA 667 (678)
Q Consensus 637 ~kC~RCw~~~~~~~~~~~~~~lC~RC-~~v~~ 667 (678)
-+|-|||+-.+...-.--..--|+-| ..++.
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEE
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCcEEEE
Confidence 48999998776421110111237777 44444
No 42
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=35.14 E-value=9.2 Score=42.11 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=28.8
Q ss_pred hHHhhhcccccccCccccCChHHHH-HHHHHHHHHHHcC-Cee
Q 005759 2 ASFKRYGVWADWNNPYLTLDPEYEA-AQIEVFGQMSLQG-YIY 42 (678)
Q Consensus 2 ~~~~~lGi~~DW~~~y~T~d~~y~~-~v~~~F~~l~~kG-lIy 42 (678)
+.|+.||+..| . |++++. |.. .+++++.+|.++| .||
T Consensus 113 ~~l~~Lgi~~D--~-~~~se~-~~~g~~~~~i~~L~~~G~~iy 151 (523)
T 1irx_A 113 EEVEKLGIEVD--L-LYASEL-YKRGEYSEEIRLAFEKRDKIM 151 (523)
T ss_dssp HHHHTTTCCCE--E-EEHHHH-HHTTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHcCCCce--E-Eechhh-ccchHHHHHHHHHHHchHHHH
Confidence 57899999766 3 466654 667 8899999999999 554
No 43
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=31.19 E-value=12 Score=26.23 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=23.0
Q ss_pred eCCCCCCCCCcccccCCCCCCCCCCCChhhHHHhccCCcc
Q 005759 633 RAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIP 672 (678)
Q Consensus 633 ~~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~~~~~ 672 (678)
.+..=||+.|-++.+.. ...|.||-.+=..=+|+
T Consensus 10 ~~D~WkC~~C~~~N~Pl------~r~C~rCw~LRk~Wlp~ 43 (46)
T 2c6a_A 10 LADYWKCTSCNEMNPPL------PSHCNRCWALRENWLPE 43 (46)
T ss_dssp GGGCEECTTTCCEECSS------CSSCTTTCCCCSSCSCC
T ss_pred ccceEecccccccCCCc------cchhhHHHhhccccCCc
Confidence 34667888888887752 36788887665555554
No 44
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=31.06 E-value=37 Score=27.00 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCeee-CCcceeccCCCC
Q 005759 26 AAQIEVFGQMSLQGYIYR-GKKPVHWSPSSR 55 (678)
Q Consensus 26 ~~v~~~F~~l~~kGlIyr-~~~pV~wcp~~~ 55 (678)
..|.+.+.+|.+.|+|.+ +.+|..|...+-
T Consensus 42 ~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 42 KEINRVLYSLAKKGKLQKEAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHHTTSEEEESSSSCEEEEC--
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCeeEEeCc
Confidence 468899999999999996 778888876553
No 45
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=29.79 E-value=40 Score=26.39 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCeee-CCcceeccC
Q 005759 26 AAQIEVFGQMSLQGYIYR-GKKPVHWSP 52 (678)
Q Consensus 26 ~~v~~~F~~l~~kGlIyr-~~~pV~wcp 52 (678)
..|.+...+|.++|+|++ +.+|..|..
T Consensus 46 ~tV~~~L~~L~~~G~I~~~g~~~~~W~i 73 (77)
T 1qgp_A 46 KEINRVLYSLAKKGKLQKEAGTPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHHHHTSEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCceEe
Confidence 568899999999999988 677777753
No 46
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=29.48 E-value=15 Score=27.58 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=18.9
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCChhhHHHhc
Q 005759 634 AEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 667 (678)
Q Consensus 634 ~~~~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~ 667 (678)
+...+|+.|-.|+-. ..|+.|-....
T Consensus 3 s~mr~C~~Cg~YTLk--------~~CP~CG~~t~ 28 (60)
T 2aus_D 3 FRIRKCPKCGRYTLK--------ETCPVCGEKTK 28 (60)
T ss_dssp -CCEECTTTCCEESS--------SBCTTTCSBCE
T ss_pred ccceECCCCCCEEcc--------ccCcCCCCccC
Confidence 456789999999863 57998865544
No 47
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=26.04 E-value=11 Score=28.04 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=22.9
Q ss_pred CCCCCCcccccCCCCCCCCCCCChhhHHHhccCCcc
Q 005759 637 SKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIP 672 (678)
Q Consensus 637 ~kC~RCw~~~~~~~~~~~~~~lC~RC~~v~~~~~~~ 672 (678)
.+||.|-...- +-.......+|..|--|++++.++
T Consensus 12 ~~Cp~C~~~~l-v~D~~~ge~vC~~CGlVl~e~~iD 46 (58)
T 1dl6_A 12 VTCPNHPDAIL-VEDYRAGDMICPECGLVVGDRVID 46 (58)
T ss_dssp CSBTTBSSSCC-EECSSSCCEECTTTCCEECCSCCC
T ss_pred ccCcCCCCCce-eEeCCCCeEEeCCCCCEEeccccc
Confidence 47999976332 112223457999999888876544
No 48
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=25.42 E-value=2.7e+02 Score=22.47 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhcccHHHH--HHHHHHHHHhhhhhHHHhhhccccCCCCChHhHHHHHHHHHHHHHHHHHHHhchh
Q 005759 409 LENIVKNIRESYESYQFFKIF--QIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPIL 484 (678)
Q Consensus 409 l~~~~~~v~~~~e~~~f~~a~--~~i~~f~~~~l~n~Y~~~~K~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaPil 484 (678)
++..+++....++.--|..++ .+.|--+.++-.|+|++.-++.+- .+..++..++.-|.+-|.++. +||+
T Consensus 11 Ist~ikeFnvLLnQQvF~~~~i~ee~MvtvV~DWvnfYinyy~~~~~---GeqqEqdrAlqel~qeL~tl~---~pFL 82 (102)
T 1z8u_A 11 ISAGLKEFSVLLNQQVFNDALVSEEDMVTVVEDWMNFYINYYRQQVT---GEPQERDKALQELRQELNTLA---NPFL 82 (102)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCCCHHHHHHHHHHHHHHHHHHHTTTCC---SCHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHh---hHHH
Confidence 445566666677776666543 334444556778999998777432 234455555555666555544 5554
No 49
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=21.08 E-value=35 Score=38.16 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=30.4
Q ss_pred hHHhhhcccccccCccccCChHHHHHHHHHHHHHHHcCCeeeC
Q 005759 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRG 44 (678)
Q Consensus 2 ~~~~~lGi~~DW~~~y~T~d~~y~~~v~~~F~~l~~kGlIyr~ 44 (678)
+.+++|||.+| .....++ .+...+..++.+|.++|++|..
T Consensus 279 ~~~~~L~V~fD--~~~~ES~-~~~~~~~~vi~~L~~kG~~ye~ 318 (607)
T 1f7u_A 279 DTYARLNIKYD--VYSGESQ-VSKESMLKAIDLFKEKGLTHED 318 (607)
T ss_dssp HHHHHTTCCCS--EEEEGGG-CCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCcce--eecCcch-hhhhHHHHHHHHHHhCCCEEEE
Confidence 57899999997 4444443 1225789999999999999984
Done!