RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 005759
(678 letters)
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 679 bits (1754), Expect = 0.0
Identities = 259/333 (77%), Positives = 288/333 (86%)
Query: 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 60
SFKRYGVW DW NPYLTLDPEYEAAQIEVFGQM L GYIYRG+KPVHWSPSSRTALAE
Sbjct: 122 RESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAE 181
Query: 61 AELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 120
AELEYPEGHVS+SIY F +VS ++ L EFLP L LA+WTTTPWT+PANAAVAVN
Sbjct: 182 AELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVND 241
Query: 121 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 180
KLQY+VVE+QS E +S + NKK RPGNVLK+Q+K+F+IVA+DLVP LEAKWG KLV+
Sbjct: 242 KLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVL 301
Query: 181 KTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 240
KT GSDLE CRY+HP+ NR+ PVVIGGDYITTESGTGLVHTAPGHGQEDY+T LKYGLP
Sbjct: 302 KTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLP 361
Query: 241 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKP 300
+LSPVDD GKFTEEAG+FSGL VLG+GN AVV+ LDE SL+MEE Y HKYPYDWRTKKP
Sbjct: 362 LLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKP 421
Query: 301 TIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333
TIFRATEQWFASVEGFRQAA+DAI +VKW+P Q
Sbjct: 422 TIFRATEQWFASVEGFRQAALDAIDKVKWIPAQ 454
Score = 600 bits (1549), Expect = 0.0
Identities = 242/346 (69%), Positives = 281/346 (81%), Gaps = 4/346 (1%)
Query: 333 QEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNS 392
++ P YGADVLRLWV+SVDYTGDV+IGPQ+L+QMSDIYRKLRGTLRYLLGNLHDW+ N+
Sbjct: 633 KQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNA 692
Query: 393 ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 452
+ Y+DLP ID+YALFQLEN+V I ESY++YQFFKIFQI+QRF IVDLSNFY DVAKDRL
Sbjct: 693 VPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRL 752
Query: 453 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 512
Y GGTTSFTRRSCQTVL+AHLLS++R IAPILPHLAED WQNLPF EDGSAAE VFE
Sbjct: 753 YVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQ---EDGSAAESVFE 809
Query: 513 SKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDAS 572
+ WP +E+W +FP ++ FW +LE+R EVNKVLE AR GKLIG+SLEAKVYL DAS
Sbjct: 810 AGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIGASLEAKVYLHASDAS 869
Query: 573 LASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVS 632
LA+RL E+C A + AD L+RIFI SQVEV+ S + Y+GEY VEG +VW+GVS
Sbjct: 870 LAARLAELCGASNGADELRRIFITSQVEVVSSEDDETAACGSYTGEY-VEGAGRVWVGVS 928
Query: 633 RAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMAAVS 678
RA+GSKCERCWNYS VGSF +HPTLC RCY V+ QP P AA
Sbjct: 929 RADGSKCERCWNYSPAVGSFSDHPTLCERCYPVVIAQPPPLAAAAV 974
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 455 bits (1174), Expect = e-149
Identities = 148/336 (44%), Positives = 204/336 (60%), Gaps = 37/336 (11%)
Query: 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 60
FKR GV DW+NPYLT+D +YEA I G+M+ +GY+Y+G KPV+W P +ALAE
Sbjct: 138 REDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAE 197
Query: 61 AELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 120
AE+EY + S SIY F +V L D L +WTTTPWT+PAN A+AV+
Sbjct: 198 AEVEYHD-KTSPSIYVAFPVVDGK------LAAAFKDASLVIWTTTPWTLPANQAIAVHP 250
Query: 121 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG-TKLVI 179
+ Y +VE+ + +K +IVA DLV ++ ++G +
Sbjct: 251 EFDYVLVEV-----------------------EGEK--LIVAKDLVESVLERFGWEDYEV 285
Query: 180 KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL 239
T G +LE HP +R P VI GD++T ++GTGLVHTAPGHG++DYV KYGL
Sbjct: 286 LATFKGKELEGLVAQHPFYDRDSP-VILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGL 344
Query: 240 PILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKK 299
+L+PVDD+G++TEEA F+GL V N +++ L+E+ +L+ EE H YP+ WRTKK
Sbjct: 345 EVLNPVDDDGRYTEEAPLFAGLFVF-KANPKIIEKLEEKGALLKEEKITHSYPHCWRTKK 403
Query: 300 PTIFRATEQWFASVE--GFRQAAMDAIGQVKWVPPQ 333
P IFRAT QWF S++ G R+ A+ AI +VKW+P
Sbjct: 404 PVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAW 439
Score = 398 bits (1026), Expect = e-127
Identities = 142/331 (42%), Positives = 196/331 (59%), Gaps = 30/331 (9%)
Query: 338 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDW-RVGNSISYD 396
YGAD+LRLWV+S DY+GDV I ++L+Q+++ YR++R TLR+LLGNL+D+ +++ Y+
Sbjct: 610 YGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYE 669
Query: 397 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 456
+L +D++AL +L + + I E+YE+Y F K++Q + F VDLS FY D+ KDRLYT
Sbjct: 670 ELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDA 729
Query: 457 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 516
S RRS QT L L ++VR +APIL AE++WQ LP G E VF +WP
Sbjct: 730 ADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP-------GEREESVFLEEWP 782
Query: 517 VLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASR 576
+ E + W ++LE+R EVNK LE AR K+IGSSLEA+V L+ D A L S
Sbjct: 783 EVPELADDEELLA--KWEELLEVRDEVNKALEEARKEKVIGSSLEAEVTLYADAALLES- 839
Query: 577 LREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEG 636
D L+ + I+SQVEV E + + + V +AEG
Sbjct: 840 ---------LGDELRFLLIVSQVEVADGPAAAAA----------AEEVEGLAVKVEKAEG 880
Query: 637 SKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 667
KCERCW+Y VGS EHPTLC RC +
Sbjct: 881 EKCERCWHYREDVGSDAEHPTLCGRCVSNVE 911
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 390 bits (1003), Expect = e-124
Identities = 144/334 (43%), Positives = 188/334 (56%), Gaps = 41/334 (12%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
FKR GVW DW NPY T+DP YE + F ++ +G +YRG KPV WSP TALAEAE+
Sbjct: 144 FKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEV 203
Query: 64 EYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ 123
EY + SIY F P L+E + L +WTTTPWT+PAN A+AV+ L
Sbjct: 204 EYGD-VKDPSIYVKF------PVKDEGLDE---NAYLVIWTTTPWTLPANLAIAVHPDLD 253
Query: 124 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG-TKLVIKKT 182
Y +VE+ +I+A LV ++ K G + +T
Sbjct: 254 YVLVEV-------------------------NGEKLILAKALVESVAKKAGVEDYEVLET 288
Query: 183 LAGSDLENCRYVHPVDNRQCPV---VIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG- 238
GS+LE RY HP + VI GD++T + GTGLVHTAPGHG+EDY KYG
Sbjct: 289 FKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGL 348
Query: 239 LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTK 298
L +L+PVDD G++TEEA K+ GL V D N +++ L E+ +L+ E EH YP+ WRTK
Sbjct: 349 LEVLNPVDDNGRYTEEAPKYEGLFVK-DANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTK 407
Query: 299 KPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPP 332
P I+RAT QWF SV+ R + I +V WVP
Sbjct: 408 TPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPD 441
Score = 302 bits (776), Expect = 6e-91
Identities = 129/331 (38%), Positives = 192/331 (58%), Gaps = 21/331 (6%)
Query: 338 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG-NSISYD 396
YGAD+LRLWV+S DY D+ ++L+Q+ ++YRK+R T R+LLGNL D+ +++ +
Sbjct: 620 YGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPE 679
Query: 397 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 456
+L +D++ L +L ++VK +RE+YE+Y F K+ + + F+ DLSN+Y D+ KDRLYT
Sbjct: 680 ELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEA 739
Query: 457 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 516
S RR+ QT L L ++VR++APILP AE++WQNLP E V WP
Sbjct: 740 ADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER------KEESVHLEDWP 793
Query: 517 VLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASR 576
+DE+ W +L+LR VNK LE AR K+IGSSL AKV ++T+D+ L +
Sbjct: 794 EVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTEDSELLYK 853
Query: 577 LREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEG 636
L+ L ++ I S VEV + + + + D V + V +AEG
Sbjct: 854 LK---------PNLGKVLITSAVEVAK-----ALEALAGAEAEELVDGDGVELTVEKAEG 899
Query: 637 SKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 667
KC RCW+Y T++G +E LC RC +
Sbjct: 900 EKCPRCWHYDTELGEELEEEGLCRRCVRRIQ 930
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 362 bits (932), Expect = e-114
Identities = 141/343 (41%), Positives = 188/343 (54%), Gaps = 43/343 (12%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
F+R GVW DW NPY T+DP YE +Q +F + +G +YRG KPV+WSP RTALAEAE+
Sbjct: 132 FQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEV 191
Query: 64 EYPEG---HVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 120
EY E SIY F + + + L +WTTTPWT+P+N A+AV+
Sbjct: 192 EYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSS-----LLIWTTTPWTLPSNLAIAVHP 246
Query: 121 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 180
+YA+V+ + K + I+A LV L K G+ I
Sbjct: 247 DFEYALVQD-----------------------NTKVEYFILAKKLVEKLYNKAGSDYEII 283
Query: 181 KTLAGSDLENCRYVHPVDNR------QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTS 234
KT GSDLE Y HP+ + PVVIGGD++TTE GTG+VHTAPGHG+EDY
Sbjct: 284 KTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIG 343
Query: 235 LKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDG------NVAVVKYLDEQMSLIMEEPYE 288
KYGL +LSPVD++G +TE F G V N +++ L ++ L+ E
Sbjct: 344 KKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKIT 403
Query: 289 HKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 331
H YP+ WRTK P I+RATEQWF + + ++ I +V WVP
Sbjct: 404 HSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVP 446
Score = 187 bits (478), Expect = 3e-50
Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 20/242 (8%)
Query: 338 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLR-GTLRYLL--GNLHDWRVG-NSI 393
YGAD+LRL+V+S D D+ ++L+Q+ + YRK+R T R+LL NL + NS+
Sbjct: 629 YGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSV 688
Query: 394 SYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLY 453
+ + P D++ L +L ++V+ + E+ E Y F K+ + +Q FI+ +LSN+Y + +DRLY
Sbjct: 689 AVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLY 748
Query: 454 TGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 513
+ +R+ QT L LL++VR++AP LPH AE+++QNLP G E V +
Sbjct: 749 CEAKDN-DKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPG------GEEEESVHLN 801
Query: 514 KWPVLDEK--WRTFP-----VGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYL 566
WP +DE+ V EI L LR NK L +IG SLEA +
Sbjct: 802 LWPEVDEEFIDEALEANMAIVREI--VEAFLALRDAANKKLRQPLKELVIGKSLEAVLKA 859
Query: 567 FT 568
Sbjct: 860 VE 861
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 329 bits (847), Expect = e-101
Identities = 130/350 (37%), Positives = 184/350 (52%), Gaps = 43/350 (12%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
FKR GV DW+NPY T+D EA FG+ + +G +YRG KPV WS RTALAEAE+
Sbjct: 149 FKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEI 208
Query: 64 EYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ 123
EY S +I+ F + G+L+ + +WTTTPWT+PAN A++ + ++
Sbjct: 209 EY-HDIESDTIWVKFPVK----DGKGILDS---GTYVVIWTTTPWTIPANRAISYSPDIE 260
Query: 124 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG-TKLVIKKT 182
Y + E+ A + ++PG L +VA L ++ K G
Sbjct: 261 YGLYEVT-------GAENDFWAKPGERL--------VVADALAESVAKKAGVESFERLAD 305
Query: 183 LAGSDLENCRYVHPVDNRQCPV----VIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG 238
+ G DLE HP+D V+ GD++T ++GTG VHTAPGHG+ED+ +KYG
Sbjct: 306 VKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYG 365
Query: 239 L-PILSPVDDEGKFTEEAGKFSGLDVL-------GDGNVAVVKYLDEQMSLIMEEPYEHK 290
I VD++G +TE A F G V+ GD N AV++ L E L+ +H
Sbjct: 366 RTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHS 425
Query: 291 YPYDWRTKKPTIFRATEQWFASVE-------GFRQAAMDAIGQVKWVPPQ 333
YP+ WR+KKP IFR T QWF S++ R A+DAI + ++VP
Sbjct: 426 YPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAA 475
Score = 269 bits (690), Expect = 1e-78
Identities = 121/341 (35%), Positives = 172/341 (50%), Gaps = 29/341 (8%)
Query: 330 VPPQE-APGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWR 388
V PQ+ GAD+LRLWV+SVDY+ D IG ++L+Q+S+ YRKLR TLR+LLGNL +
Sbjct: 639 VSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFD 698
Query: 389 VG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDV 447
G + ++Y DLP +++Y L +L + +RE+Y++Y F +I++ + F+ VDLS FYFD+
Sbjct: 699 PGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDI 758
Query: 448 AKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAA 507
KD LY +S RR+ QTV + + + +APILP AE+ W
Sbjct: 759 RKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYP-------EEE 811
Query: 508 EFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLF 567
V ++P WR + E W K +R V LE R K IGSSLEA ++
Sbjct: 812 VSVHLEQFPETPAFWRDDALAEK--WRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVY 869
Query: 568 TDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPS-TPNGLIRNIPYSGEYLVEGKDK 626
D L + L + I I SQ+ V P R G
Sbjct: 870 IADPELLAAL--------EGLDFAEICITSQLTVAAGEAPADAFRLDEVEG--------- 912
Query: 627 VWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 667
V + V +AEG KC R W + VGS +P + R + L
Sbjct: 913 VAVVVEKAEGEKCARSWRITPDVGSDPYYPDVSPRDAKALR 953
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 303 bits (779), Expect = 2e-94
Identities = 123/328 (37%), Positives = 174/328 (53%), Gaps = 40/328 (12%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
FKR GV DW+ Y TLDP EAA VF ++ +G IYRGKKPV+WSP+ TAL+EAE+
Sbjct: 119 FKRLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEV 178
Query: 64 EYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ 123
EY + SI+ F + L +WTTTPWT+P N AVAVN +
Sbjct: 179 EYKDVK-GPSIHVAFPLADG------------KGASLVIWTTTPWTLPGNTAVAVNPEFN 225
Query: 124 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTL 183
Y + + + I+A L+ +L K I +
Sbjct: 226 YVKIRV-------------------------TGEYYILAEALLKSLYKKKKEDGEILEDF 260
Query: 184 AGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILS 243
G +L +Y+HP NR+ P +I DY+ E GTG VH AP HG++DY ++ L ++
Sbjct: 261 RGKELIGKKYIHPFVNREIP-IIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFIN 319
Query: 244 PVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIF 303
PVDD+G + EEA +F GL +V+ L E+ L+ EP EH YP+ WR+ P I+
Sbjct: 320 PVDDDGTYNEEAPEFQGLKRF-KARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIY 378
Query: 304 RATEQWFASVEGFRQAAMDAIGQVKWVP 331
RAT QWF ++ +AA+ A+ +V++VP
Sbjct: 379 RATPQWFVRMKNLAEAALKAVEKVQFVP 406
Score = 32.0 bits (73), Expect = 1.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 338 YGADVLRLWVSSVDYTGDV 356
YGAD LRLW++S DY D+
Sbjct: 585 YGADALRLWLASSDYGRDI 603
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 277 bits (710), Expect = 3e-81
Identities = 108/338 (31%), Positives = 162/338 (47%), Gaps = 56/338 (16%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIE----VFGQMSLQGYIYRGKKPVHWSPSSRTALA 59
+R G W D++NPY TLD EY +E Q+ +G +Y+G + V + P T L+
Sbjct: 137 TERLGRWVDFDNPYKTLDNEY----MESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLS 192
Query: 60 EAELE--YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVA 117
E+ Y + S+Y F++ G NE+L WTTTPWT+P+N A+A
Sbjct: 193 NHEVAQGYKDVK-DPSVYVKFKL-------KGEENEYL-----LAWTTTPWTLPSNLALA 239
Query: 118 VNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKL 177
V+ + Y VE I+A L+ +
Sbjct: 240 VHPDIDYVKVE-------------------------GGGEVYILAEALLEKVL---KEDY 271
Query: 178 VIKKTLAGSDLENCRYVHP----VDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT 233
+ +T GS+LE Y P D + V+ D++TTE GTG+VH AP G++D+
Sbjct: 272 EVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEV 331
Query: 234 SLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPY 293
KYGLP++ PVDD+G+FTEE ++G V D + +++ L E+ L E YEH YP+
Sbjct: 332 GKKYGLPVVCPVDDDGRFTEEVPDYAGKFVK-DADKEIIRDLKERGLLFKAETYEHSYPH 390
Query: 294 DWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 331
WR P I+ ATE WF V + ++ ++ W P
Sbjct: 391 CWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYP 428
Score = 72.1 bits (178), Expect = 5e-13
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 338 YGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLR------YLLGNLHDW-RV 389
YGAD LR ++ SS D+ +R ++ RK TL L NL +
Sbjct: 610 YGADALRWYLLSSSAPWEDLRFSEDGVR---EVVRKFLLTLWNVYSFFVLYANLDGFDYP 666
Query: 390 GNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAK 449
D L +D++ L +L ++VK + E+ ++Y K + I+ F+ DLSN+Y ++
Sbjct: 667 PAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSR 725
Query: 450 DRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEF 509
R + + + L L ++ R+ AP P +AE+++QNL T ED E
Sbjct: 726 RRFWKEEDDP-DKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNL----TREDA--PES 778
Query: 510 VFESKWPVLDEKWR 523
V + WP +DE
Sbjct: 779 VHLADWPEVDESLI 792
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 239 bits (612), Expect = 3e-75
Identities = 81/188 (43%), Positives = 122/188 (64%), Gaps = 9/188 (4%)
Query: 358 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDW-RVGNSISYDDLPMIDQYALFQLENIVKNI 416
I ++L+Q+++ YRK+R T R+LLGNL+D+ +++ Y++L +D+YAL +L ++K +
Sbjct: 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEV 60
Query: 417 RESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSI 476
RE+YE+Y+F K++Q + F VDLS FY D+ KDRLY S RRS QTVL L ++
Sbjct: 61 REAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDAL 120
Query: 477 VRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKI 536
++++APILP AE+VW++LP E VF WP L E+W+ + E W K+
Sbjct: 121 LKLLAPILPFTAEEVWEHLPGE------KKEESVFLEDWPELPEEWKDEELEE--KWEKL 172
Query: 537 LELRTEVN 544
L LR EVN
Sbjct: 173 LALRDEVN 180
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 156 bits (396), Expect = 2e-39
Identities = 107/355 (30%), Positives = 159/355 (44%), Gaps = 64/355 (18%)
Query: 5 KRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA--EAE 62
R G W D+ N Y T+DP++ + VF Q+ +G +Y+G K + +S + +T L+ EA
Sbjct: 135 TRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAG 194
Query: 63 LEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKL 122
L Y + VS AV MVS P ++ + + WTTTPWT+P+N A+ VN
Sbjct: 195 LNYKD--VSD--PAV--MVSFP-----IVGDPD-NASFVAWTTTPWTLPSNLALCVNPNF 242
Query: 123 QYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDL------VPTLEAKWGTK 176
Y V K KV+I+ S L P + +
Sbjct: 243 TYVKVRN----------------------KYTGKVYIVAESRLSALPTAKPKSKKGSKPE 280
Query: 177 LV-----IKKTLAGSDLENCRYVHPV------DNRQCPVVIGGDYITTESGTGLVHTAPG 225
+ + GS L +Y P+ + V+ DY+T +SGTG+VH AP
Sbjct: 281 NAAEGYEVLAKVPGSSLVGKKYE-PLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPA 339
Query: 226 HGQEDYVTSLKYG-------LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQ 278
G++DY L G LP+ PVDD+G FTE+ FSG V D + ++ + +
Sbjct: 340 FGEDDYRVCLANGIIEKGGNLPV--PVDDDGCFTEKVTDFSGRYV-KDADKDIIAAIKAK 396
Query: 279 MSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333
L+ H YP+ WR+ P I+RA WF VE + ++ Q WVP
Sbjct: 397 GRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDY 451
Score = 42.4 bits (100), Expect = 8e-04
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 338 YGADVLRLWVSSVDYTGDVMIGPQVLRQMS-------------DIYRKLRGTLRYLLGNL 384
YGAD LRL+ +I V+R D++ R+L+ N
Sbjct: 632 YGADALRLY----------LINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNA 681
Query: 385 HDWRVGNSISYDDLP---------MIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRF 435
V + L ++D++ +++VK +RE +Y+ + + + +F
Sbjct: 682 KRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKF 741
Query: 436 IIVDLSNFYFDVAKDRL--YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQ 493
I +L+N Y + RL TG R+ + L LL+ +V+AP P E ++Q
Sbjct: 742 I-DNLTNIYVRFNRKRLKGRTGEEDC---RTALSTLYNVLLTSCKVMAPFTPFFTEVLYQ 797
Query: 494 NL 495
NL
Sbjct: 798 NL 799
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 125 bits (317), Expect = 9e-34
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 402 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFT 461
D++ L +L ++K + E+YE Y+F + F DLS++Y +++KDRLY S
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSD- 59
Query: 462 RRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 521
RS QTVL L +++R++AP +P + E++WQ L E + + WP DE
Sbjct: 60 -RSAQTVLYEVLETLLRLLAPFMPFITEELWQKLGK---------KESIHLAPWPEPDEV 109
Query: 522 WRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYL 566
+ ELR E+ + + R+ I SL +V L
Sbjct: 110 EEDE------ELEEEFELRQEIVQAIRKLRSELKIKKSLPLEVVL 148
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 113 bits (283), Expect = 1e-25
Identities = 93/388 (23%), Positives = 151/388 (38%), Gaps = 86/388 (22%)
Query: 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 60
+ + +R G W D+ N Y T+D + + VF ++ Y+Y+ K + +S T ++
Sbjct: 195 VKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISN 254
Query: 61 AEL-----EYPEGHVSRSIYAVFRMVSAPPST-----------------SGLLNE----- 93
EL + P+ SI F + S P S L N
Sbjct: 255 FELNLNYKDTPD----PSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENS 310
Query: 94 ------------FLPDLGLAVWTTTPWTVPANAAVAVNAKLQY-AVVEIQSLLEGDSAAP 140
+ + WTTTPWT+P+N A+ VN Y + ++S
Sbjct: 311 NNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKS--------- 361
Query: 141 ANKKSRPGNVLKDQKKVFIIVASDLVPTL-EAKWGTK-LVIKKTLAGSDLENCRYVHPVD 198
+V I+ L + E KW + L I G +L+ RY P+
Sbjct: 362 --------------NRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRY-KPLF 406
Query: 199 N---------RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL--P----ILS 243
+ ++ D++T ++GTG+VH AP +G++D+ K G+ P +
Sbjct: 407 TNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFID 466
Query: 244 PVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIF 303
P+D G FT E + L + NV + K L + L+ H YP+ WR+ P I+
Sbjct: 467 PLDANGYFTNEVEEVQNLYIKEADNV-IKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIY 525
Query: 304 RATEQWFASVEGFRQAAMDAIGQVKWVP 331
RA WF V + W+P
Sbjct: 526 RAIPAWFIRVSNSTNELVKNNETTYWIP 553
Score = 39.6 bits (92), Expect = 0.006
Identities = 23/102 (22%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 395 YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYT 454
Y + ++DQ+ ++++ K++ ++Y+ + + + +F I +L+N+Y + +DR+
Sbjct: 806 YKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQF-IENLTNWYIRLNRDRMRG 864
Query: 455 G-GTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 495
G + + C T + HL ++ ++AP P + E ++Q L
Sbjct: 865 SLGEENCLQSLCTTYRTLHLFTV--LMAPFTPFITEYIYQQL 904
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 101 bits (253), Expect = 4e-22
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 253
+ P+ R+ P+ I +Y+ E GTG V P H DY ++ L ++ +D++G E
Sbjct: 245 ILPLTGRKIPI-IADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNE 303
Query: 254 EAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASV 313
AGK+ GL + +V+ L E+ L+ EP+ H WR+ ++QWF V
Sbjct: 304 NAGKYQGLTRF-EARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKV 362
Query: 314 EGFRQAAMDAI--GQVKWVPPQEAPGYGADVLRLWVSSVD 351
E A++A G++K+VP + L W+ ++
Sbjct: 363 EKLADKALEAAEEGEIKFVPKR----MEKRYLN-WLRNIK 397
Score = 88.6 bits (220), Expect = 4e-18
Identities = 66/270 (24%), Positives = 122/270 (45%), Gaps = 24/270 (8%)
Query: 338 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD 396
YGAD LR ++S+ G D+ + + + KL R++L NL D + S +
Sbjct: 543 YGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSD-DLELSGGEE 601
Query: 397 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 456
L + D++ L +L +K +R++ + Y+F + + + FI D ++Y ++ K RLY G
Sbjct: 602 KLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGN 661
Query: 457 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 516
+++ + L L +R++ P +P + E++WQ+ A+ + +P
Sbjct: 662 EAE--KKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFK--------EGADSIMLQSYP 711
Query: 517 VLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASR 576
V+D ++ E K EL E+ + + I + KV L +A A R
Sbjct: 712 VVDAEF-VDEEAE-----KAFELLKEIIVSIRNLKAESNIPPNAPLKVLLIYTEAETAER 765
Query: 577 LREMCTAKHDADTLQRIFIISQVEVLPSTP 606
L K +A ++ S+VEV+ P
Sbjct: 766 L------KLNAVDIKGAINFSEVEVVIEKP 789
Score = 76.2 bits (188), Expect = 2e-14
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 5 KRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 64
KR G DW+ T+D A E F ++ +G IYRG+ V+W P TA+++ E+E
Sbjct: 129 KRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVE 188
Query: 65 YPE--GHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVN 119
Y E G + Y + L V TT P T+ + AVAV+
Sbjct: 189 YKEVKGKLYYIRYPL---------------ANGSKDYLVVATTRPETMFGDTAVAVH 230
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 96.5 bits (241), Expect = 1e-20
Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 187 DLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVD 246
L + P+ R+ P+ I +Y+ E GTG V P H DY ++ LP+++ +D
Sbjct: 237 HLVGKEVILPLVGREIPI-IADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIID 295
Query: 247 DEGKFTEEA-GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA 305
++G+ EEA G+F+GLD + +V+ L+EQ L+ EP++H + R P
Sbjct: 296 EDGRINEEAAGEFAGLDRF-EARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLL 354
Query: 306 TEQWFASVEGFRQAAMDAI--GQVKWVPPQ 333
++QWF V + A++A+ G++K+VP +
Sbjct: 355 SKQWFVKVLELAKKALEAVKDGKIKFVPER 384
Score = 94.6 bits (236), Expect = 6e-20
Identities = 64/279 (22%), Positives = 121/279 (43%), Gaps = 31/279 (11%)
Query: 338 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD 396
YGAD LR ++S+ G D+ + + + KL R++L NL D D
Sbjct: 543 YGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDD---LGPDDLD 599
Query: 397 DLPM--IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYT 454
L + D++ L +L VK + E+ ++Y+F + + + FI D ++Y ++AK RLY
Sbjct: 600 LLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYG 659
Query: 455 GGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESK 514
G +R+ + L L +++R++ P +P + E++WQ LP S + +
Sbjct: 660 G---EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLP-----GTES----IHLAS 707
Query: 515 WPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLA 574
WP +DE+ E F + E+ + + R + S KV L +
Sbjct: 708 WPEVDEELI-DEEAEKEF-ELLKEIISAIRN----LRAEMNLSPSAPLKVVLVGSEELED 761
Query: 575 SRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNI 613
+ + D ++ + + ++E+L P +
Sbjct: 762 R-------LEANEDDIKGLANLEELEILSPDPEEPPVEV 793
Score = 78.8 bits (195), Expect = 4e-15
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
+R GV DW+ T+DP A E F ++ +G IYRG++ V+W P RTA+++ E+
Sbjct: 128 LRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEV 187
Query: 64 EYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVN 119
EY E Y + + +L V TT P T+ + AVAV+
Sbjct: 188 EYKEVEGKL-YYIKYPLADGD--------GYLV-----VATTRPETLLGDTAVAVH 229
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 92.1 bits (230), Expect = 4e-19
Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 253
+ P+ R+ P+ I +Y+ E GTG V P H D+ ++ LP+++ +D++G E
Sbjct: 247 ILPLVGREIPI-IADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINE 305
Query: 254 EAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASV 313
G++ GLD + A+V L+E L+ EP+ H + R+ ++QWF +
Sbjct: 306 NPGEYQGLDRF-EARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKM 364
Query: 314 EGFRQAAMDAI--GQVKWVPPQ 333
+ + A++A+ G++K+VP +
Sbjct: 365 KPLAKPALEAVENGEIKFVPER 386
Score = 80.9 bits (201), Expect = 1e-15
Identities = 63/270 (23%), Positives = 115/270 (42%), Gaps = 33/270 (12%)
Query: 338 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYR----KLRGTLRYLLGNLHDWRVGNS 392
YGAD LR ++++ G D+ + + YR KL R++L NL VG
Sbjct: 538 YGADALRFTLAALASPGRDIRFDEERVEG----YRNFANKLWNASRFVLMNLEGADVGEL 593
Query: 393 ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 452
++L + D++ L +L V + E+ + Y+F + + + FI + ++Y ++AK L
Sbjct: 594 PDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVL 653
Query: 453 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 512
+R+ + L+ L I+R++ P +P + E++WQ L E +
Sbjct: 654 QEAA-----KRATRATLAYVLEQILRLLHPFMPFITEELWQKLA------PLGIEESIML 702
Query: 513 SKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDAS 572
+ WP DE E + EL T + + R I S + + L DA
Sbjct: 703 APWPEADEAIDEAAEAEF---EWLKELITAIRNI----RAEMNIPPSKKLPLLLKGADAE 755
Query: 573 LASRLREMCTAKHDADTLQRIFIISQVEVL 602
+RL ++R+ + +E+L
Sbjct: 756 DRARLEAN------EAYIKRLARLESLEIL 779
Score = 59.3 bits (145), Expect = 4e-09
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 5 KRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 64
+R G DW+ T+D A EVF ++ +G IYRGK+ V+W P +TAL++ E+E
Sbjct: 132 RRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVE 191
Query: 65 YPE--GH 69
Y E G
Sbjct: 192 YKEVKGK 198
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 88.4 bits (220), Expect = 6e-19
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHW 50
F+R GVW DW NPY T+DPEY + VF Q+ +G +YRG K V W
Sbjct: 94 EEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW 143
Score = 57.6 bits (140), Expect = 6e-09
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 287 YEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333
Y W P I+RAT QWF V + ++A +V W+P
Sbjct: 135 YRGYKVVPW----PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEW 177
Score = 33.7 bits (78), Expect = 0.26
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 330 VPPQE-APGYGADVLRLWVSSVD-YTGDVMI 358
V PQE YGAD LRLWV+S D Y D+
Sbjct: 308 VDPQEVVDKYGADALRLWVASSDVYAEDLRF 338
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 79.7 bits (196), Expect = 2e-15
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 7/151 (4%)
Query: 187 DLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVD 246
L + HP+ R P+V + + GTG V P H D+ ++GL +++ +
Sbjct: 254 ALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIG 313
Query: 247 DEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIF--R 304
+G+ T EAG +GLD + V + L EQ +P H P + TI
Sbjct: 314 PDGRMTAEAGPLAGLDRF-EARKEVKRLLAEQGLDRGAKP--HVLPLGRCQRSATILEPL 370
Query: 305 ATEQWFASVEGFRQAAMDAI--GQVKWVPPQ 333
++QW+ +E + A++A+ G+ +++P Q
Sbjct: 371 LSDQWYVRIEPLARPAIEAVEQGRTRFIPEQ 401
Score = 64.6 bits (157), Expect = 1e-10
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
Query: 336 PGYGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSIS 394
YGAD LR ++++ G D+ + + + KL R+ L NL +
Sbjct: 554 EQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGY-QERGED 612
Query: 395 YDDLPMI--DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 452
L D++ L +L+ V E+ E+++F + F+ +L ++Y ++AK+ L
Sbjct: 613 PARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEAL 672
Query: 453 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 512
RRS Q VL L + R++ P +P + E++W L + A+ V
Sbjct: 673 A--SEDPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGAS--AWADSVLA 728
Query: 513 SKWPVLDE 520
+++P E
Sbjct: 729 AEYPRKGE 736
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the
transfer of valine to the 3'-end of its tRNA.
Length = 135
Score = 70.7 bits (174), Expect = 1e-14
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 378 RYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 437
R++L NL D + L + D++ L +L V+ + E+ E+Y+F + + F
Sbjct: 21 RFVLMNLEDDDEPEEDP-ESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFW 79
Query: 438 VDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 495
D ++Y ++ K RLY +++ + L L +I+R++ P +P + E++WQ L
Sbjct: 80 NDFCDWYLELVKPRLYGEDEEE--KKAARATLYYVLETILRLLHPFMPFITEELWQRL 135
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of
archaeal, bacterial, and eukaryotic cytoplasmic
isoleucyl tRNA synthetases. This domain is found in
isoleucyl tRNA synthetases (IleRS), which belong to the
class Ia aminoacyl tRNA synthetases. It lies C-terminal
to the catalytic core domain, and recognizes and
specifically binds to the tRNA anticodon. This family
includes bacterial, archaeal, and eukaryotic cytoplasmic
members. IleRS catalyzes the transfer of isoleucine to
the 3'-end of its tRNA.
Length = 183
Score = 71.8 bits (177), Expect = 2e-14
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 383 NLHDWRVGN-SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLS 441
NL + G + L ++D++ L +L +++K + E E+Y + + + FI +L+
Sbjct: 29 NLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFI-DELT 87
Query: 442 NFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTL 501
N+Y + R + + T+ LL++ R++AP P + E+++QNL
Sbjct: 88 NWYIRRNRKRFWGEEGDDDKLAAYATLYEV-LLTLSRLMAPFTPFITEEIYQNL----RR 142
Query: 502 EDGSAAEFVFESKWPVLDEKW 522
E G A E V WP +DE
Sbjct: 143 ELGDAPESVHLLDWPEVDESL 163
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 75.2 bits (186), Expect = 6e-14
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 28/193 (14%)
Query: 338 YGADVLRLWVSS----VDYT---GDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG 390
YGAD +R W +S D V IG ++L ++ + R + +
Sbjct: 551 YGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASR--------FVLHFSADPEP 602
Query: 391 NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 450
+ + L +D++ L +L +V+ E+ E+Y F K + I+ F + Y ++ K
Sbjct: 603 DKA--EVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKS 660
Query: 451 RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFV 510
R Y G ++S + L L +++R++AP LP + E+VW L GS V
Sbjct: 661 RAY-GEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWS------WLYGGS----V 709
Query: 511 FESKWPVLDEKWR 523
+ WP DE+
Sbjct: 710 HRASWPEPDEELI 722
Score = 64.8 bits (159), Expect = 1e-10
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEA 61
++R G+ DW+ Y T+ PEY + F + +G IYR + PV W P TA+A+A
Sbjct: 128 ELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQA 187
Query: 62 ELEYPE 67
E+EY E
Sbjct: 188 EVEYRE 193
Score = 62.1 bits (152), Expect = 7e-10
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 236 KYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDW 295
+ LP +D++G+ TE AGK +GL + + +V+ L L +EP +H +
Sbjct: 286 ELNLPTRIIIDEDGRMTEAAGKLAGLTIE-EARKKIVEDLKSGGLLGKQEPIKHNVKFCE 344
Query: 296 RTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPP 332
R P T QWF V ++ ++ ++ W P
Sbjct: 345 RCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYPE 381
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 64.6 bits (158), Expect = 6e-11
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAE 62
KR G DW+ Y T+DP A E F ++ +G IYR + V+W P RTA+++ E
Sbjct: 96 LKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIE 154
Score = 33.0 bits (76), Expect = 0.47
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 295 WRTKKPTIFRATEQWFASVEGFRQAAMDAI--GQVKWVP 331
R+ QWF V+ + A++A+ G +K+VP
Sbjct: 157 SRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVP 195
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 65.4 bits (160), Expect = 7e-11
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 186 SDLENCRYVHP-VDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSP 244
L +HP + +R+ P++ + + E GTG V P H DY + ++ LP ++
Sbjct: 281 KKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINI 340
Query: 245 VDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIME-EPYEHKYPYDWRTKKPTIF 303
+GK E G+F+G+ D + + L ++M L+ + P + P R+
Sbjct: 341 FTLDGKINENGGEFAGMHRF-DCRRKIEEEL-KEMGLLRDKVPNPMRLPRCSRSGDIVEP 398
Query: 304 RATEQWFASVEGFRQAAMDAI--GQVKWVPPQ 333
QW+ + + + A++A+ G++K +P
Sbjct: 399 MLIPQWYVNCKDMAKRAVEAVRNGELKIIPSS 430
Score = 62.7 bits (153), Expect = 4e-10
Identities = 63/312 (20%), Positives = 127/312 (40%), Gaps = 47/312 (15%)
Query: 323 AIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDI--YR----KLRGT 376
AI K P P G D LR + + YT G + ++ + YR KL
Sbjct: 625 AIELQKKEFPNGIPECGTDALRFGLLA--YTQQ---GRNINLDINRVVGYRHFCNKLWNA 679
Query: 377 LRYLLGNLHDWRVGNSISY------DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQ 430
+++ L L + + + LP D++ L +L +K + E ++ Y F + Q
Sbjct: 680 VKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQ 739
Query: 431 IIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAED 490
F + +L + Y ++ K RL + + ++ Q VL L +R++ P++P + E+
Sbjct: 740 ATYNFWLYELCDVYLELIKPRL-SKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEE 798
Query: 491 VWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVA 550
++Q LP +E + +K+P + W L E+ ++ +
Sbjct: 799 LYQRLP-----NYLRKSESISIAKYPQPNPGW------------NNEALDEEMKIIMSIV 841
Query: 551 RTGKLIGSSLE------AKVYLFTDDASLASRLREMCTAKHDADTLQR---IFIISQVEV 601
++ + + ++L Y+ DA L + +A++ TL + + +I +E
Sbjct: 842 KSIRSLIATLGIPNKTKPDCYVTAKDAELIELIE---SAENLISTLAKIGSVSVIPPIEE 898
Query: 602 LPSTPNGLIRNI 613
P G ++
Sbjct: 899 EAEVPKGCGFDV 910
Score = 54.6 bits (132), Expect = 1e-07
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
+R G DW+ T+D + A E F ++ G IYR + V+W +TA+++ E+
Sbjct: 156 LRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEV 215
Query: 64 EYPE----------GHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPAN 113
E+ E G+ + V + P SG + V TT T+ +
Sbjct: 216 EFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSG-------QEEIVVATTRIETMLGD 268
Query: 114 AAVAVNAK 121
AVAV+ K
Sbjct: 269 VAVAVHPK 276
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 63.4 bits (154), Expect = 3e-10
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 17/119 (14%)
Query: 5 KRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 64
KR G DW+ TLD + A +E F ++ +G IY+G V+WSP+ +TA+++ E+E
Sbjct: 184 KRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 243
Query: 65 YPE--GHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAK 121
Y E G + Y V +G +FL + TT P T+ + A+AVN +
Sbjct: 244 YSEEPGTLYYIKYRV----------AGGSEDFLT-----IATTRPETLFGDVAIAVNPE 287
Score = 60.7 bits (147), Expect = 2e-09
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 338 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD------WRVGN 391
+G D LR ++ D+ + + L KL +++L NL W
Sbjct: 601 FGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHIL 660
Query: 392 SISYDD------LPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYF 445
+ +D LP+ + + + +L ++ ++ SY+ Y F + + I F D +++Y
Sbjct: 661 ACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYI 720
Query: 446 DVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGS 505
+ +K RLY G S R+ Q VL +I++++ P +P + E++WQ LP+
Sbjct: 721 EASKTRLYHSGDNSALSRA-QAVLLYVFENILKLLHPFMPFVTEELWQALPY-------- 771
Query: 506 AAEFVFESKWP 516
E + S WP
Sbjct: 772 RKEALIVSPWP 782
Score = 52.3 bits (125), Expect = 7e-07
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 200 RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFS 259
R P+ I Y+ + GTG++ +PGH DY+ + K GLPIL+ ++ +G E AG +
Sbjct: 307 RHVPI-IADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLY- 364
Query: 260 GLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQA 319
+ + L+E + +EP+ + P R + ++QWF ++E +
Sbjct: 365 ----WFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEK 420
Query: 320 AMDAI--GQVKWVP 331
A+ A+ G++ +P
Sbjct: 421 ALKAVENGELTIIP 434
>gnl|CDD|203527 pfam06827, zf-FPG_IleRS, Zinc finger found in FPG and IleRS. This
zinc binding domain is found at the C-terminus of
isoleucyl tRNA synthetase and the enzyme
Formamidopyrimidine-DNA glycosylase EC:3.2.2.23.
Length = 30
Score = 53.9 bits (130), Expect = 9e-10
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 636 GSKCERCWNYSTQVGSFVEHPTLCSRCYEV 665
G KC RCWNY VG LC RC +V
Sbjct: 1 GEKCPRCWNYIEDVGQGGRSTFLCPRCQKV 30
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 59.7 bits (145), Expect = 1e-09
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPS 53
F+R G+ DW++ Y+T +PEY A +F ++ +G IYRG PV +
Sbjct: 90 EDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQ 141
Score = 36.6 bits (85), Expect = 0.035
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 304 RATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVD 351
R TEQWF + F++ + A+ + K VP A W+ S+
Sbjct: 137 RITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEA-----WLESLL 179
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 55.2 bits (134), Expect = 8e-09
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVDDEGK 250
+HP+ + P+ I +++ + GTG V P H Q D+ + KY LPI + P D +
Sbjct: 83 IHPITGEKIPIWIA-NFVLMDYGTGAVMAVPAHDQRDFEFAKKYNLPIKQVIKPEDGDED 141
Query: 251 -------FTEEA-----GKFSGLDVLGDGNVAVVKYL 275
+TE+ G+F GLD + A+ + L
Sbjct: 142 DLIMEEAYTEKGILINSGEFDGLDS-EEAKEAIAEKL 177
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 55.5 bits (135), Expect = 7e-08
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVDDEGK 250
+HP+ + PV I DY+ + GTG V P H Q D+ + KYGLPI + P D +
Sbjct: 309 IHPLTGEKIPVWIA-DYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDED 367
Query: 251 FTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 278
+EEA G+ GLD + A++ +L+E+
Sbjct: 368 ISEEAYTGDGVLINSGELDGLDS-EEAKEAIIAWLEEK 404
Score = 46.2 bits (111), Expect = 5e-05
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 27/121 (22%)
Query: 402 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFT 461
D+ +L +K + E E +F I + L N + ++
Sbjct: 646 DKELRRKLHKTIKKVTEDIERLRFNTA---IAALME--LVNALYKAEDEQD--------- 691
Query: 462 RRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 521
+ VL L +VR++AP PHLAE++W+ L + + WP DE
Sbjct: 692 ----KAVLREALEILVRLLAPFAPHLAEELWEKL---------GHEGSIANAPWPTADEA 738
Query: 522 W 522
Sbjct: 739 A 739
Score = 30.8 bits (71), Expect = 3.2
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEA 61
K G DW+ T DPEY +F ++ +G YR + PV+W P T LA
Sbjct: 109 KQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANE 168
Query: 62 ELEYPEGHVSRSIYAVFR 79
++ +G R V +
Sbjct: 169 QVI--DGRCWRCGAPVEK 184
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 53.7 bits (130), Expect = 3e-07
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 50/239 (20%)
Query: 338 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLR--YLLGNLHDWRVGNSISY 395
YGADV+RL+++S + ++ Q +R L Y L +
Sbjct: 595 YGADVVRLYLTS---SAEL---LQDADWREKEVESVRRQLERFYELAK----ELIEIGGE 644
Query: 396 DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD-RLYT 454
++L ID++ L +L I+K E+ ES+Q Q ++++ D R Y
Sbjct: 645 EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEA-----------FYELLNDLRWYL 693
Query: 455 GGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESK 514
+ + VL +R++AP PHLAE++W L FV K
Sbjct: 694 RRVGEANNKVLREVLEI----WIRLLAPFTPHLAEELWHKL---------GGEGFVSLEK 740
Query: 515 WPVLDEKW--RTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDA 571
WP DE + E Y +++E ++ ++L+VA+ KVY++
Sbjct: 741 WPEPDESKIDEEAELAEEYV-KRLIE---DIREILKVAKIKP-------KKVYIYVAPD 788
Score = 34.8 bits (81), Expect = 0.15
Identities = 58/236 (24%), Positives = 90/236 (38%), Gaps = 52/236 (22%)
Query: 3 SFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAE 62
KR G DW + T DPEY F ++ +G I +G PV + P+ + + +
Sbjct: 88 DMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHD 147
Query: 63 LEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLP--DLGLAVWTTTPWTVPANAAVAVNA 120
L E P L +F DL L T P T+ + VN
Sbjct: 148 LLDGEE---------------PEIVEYTLIKFEESEDLILPAATLRPETIFGVTNLWVNP 192
Query: 121 KLQYAVVEIQSLLEGD----SAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTK 176
Y E+ +G+ S A K L Q + I+ E K G++
Sbjct: 193 DATYVKAEV----DGEKWIVSKEAAEK-------LSFQDRDVEIIE-------EIK-GSE 233
Query: 177 LVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYV 232
L+ KK +PV ++ P ++ D++ ++GTG+V + P H DYV
Sbjct: 234 LIGKK-----------VKNPVTGKEVP-ILPADFVDPDNGTGVVMSVPAHAPYDYV 277
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 52.3 bits (126), Expect = 8e-07
Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 51/203 (25%)
Query: 330 VPPQEA-PGYGADVLRLWV-------SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLL 381
V P+EA YGAD +RL++ ++++ + G R L+
Sbjct: 588 VDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEG---------ARRFLQ------- 631
Query: 382 GNLHDWRVGNSISYDDLPMIDQ--YALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVD 439
+ + + + +Q + L +K + E +E+ Q F I +
Sbjct: 632 -RVWNLVKEHLEKLVEELTKEQGKEDRWLLHRTIKKVTEDFEARQTFNT--AIAALME-- 686
Query: 440 LSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAY 499
L N + K T G R + +T VR++AP PH+AE++W+ L
Sbjct: 687 LLN---ALRKYLRRTEGDRKVLREALET--------WVRLLAPFAPHIAEELWEEL---- 731
Query: 500 TLEDGSAAEFVFESKWPVLDEKW 522
FV + WP DE+
Sbjct: 732 -----GNEGFVSNAPWPEPDEEA 749
Score = 45.7 bits (109), Expect = 7e-05
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 3 SFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAE 62
K G DW + T DPEY F ++ +G YR + PV+W P T LA +
Sbjct: 112 QLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQ 171
Query: 63 LEYPEGHVSRSIYAVFR 79
+ +G R V
Sbjct: 172 VI--DGGCWRCGEPVEI 186
Score = 42.7 bits (101), Expect = 7e-04
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 253
++PV+ + PV I +Y+ E GTG V P H + D + KY LPI + EG +
Sbjct: 316 INPVNGEKIPVWIA-NYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGK 374
Query: 254 EA----------GKFSGLDVLGDGNVAVVKYLDEQM 279
+ G GLD + V + L ++
Sbjct: 375 KVYEGEGVLINSGGLDGLDY-EEAKVKIRCGLVKRG 409
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 47.1 bits (112), Expect = 2e-06
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 8/122 (6%)
Query: 363 LRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYES 422
L+Q +L L + L + L D+ L +L+ +K + E+
Sbjct: 4 LKQARAFLNRLYRLLSFFRKALGGTQPKWDNE--LLEEADRELLARLQEFIKRTTNALEA 61
Query: 423 YQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAP 482
Q + +F N+Y D K L T R + VL A L+ + +++AP
Sbjct: 62 LDPTTAVQELFKFTNEL--NWYLDELKPALQ----TEELREAVLAVLRAALVVLTKLLAP 115
Query: 483 IL 484
Sbjct: 116 FT 117
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 49.8 bits (119), Expect = 4e-06
Identities = 73/302 (24%), Positives = 114/302 (37%), Gaps = 57/302 (18%)
Query: 5 KRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 64
K G DW+ T +PEY +F Q+ +G Y+ + PV+W P+ T LA E+
Sbjct: 191 KSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV- 249
Query: 65 YPEGHVSRSIYAVFRMVSAPPSTSGLL------NEFLPDLGLAVWTTTPWTVPAN-AAVA 117
+G R + V R P +L + L DL W + + N +
Sbjct: 250 -VDGLSERGGHPVIRK----PMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRS 304
Query: 118 VNAKLQYAVVEIQSLLEGDSAAPANK----KSRPGNVLKDQKKVFIIVASD--LVP---T 168
A+L ++V L+G+ K +RP + +++VA + L+ T
Sbjct: 305 EGAELDFSV------LDGEGKERDEKITVYTTRPDTLFG---ATYLVVAPEHPLLSSLTT 355
Query: 169 LEAKWGTKLVIKKTLAGSDLE-------------NCRYVHPVDNRQCPVVIGGDYITTES 215
E K + + SDLE ++P P+ + DY+
Sbjct: 356 AEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAINPATGEAIPIWVA-DYVLGSY 414
Query: 216 GTGLVHTAPGHGQEDYVTSLKYGLPILSPV-------DDEGKFTEEAGKF-----SGLDV 263
GTG + P H D+ + K+ LPI V DD K G SGLD+
Sbjct: 415 GTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDI 474
Query: 264 LG 265
G
Sbjct: 475 NG 476
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 49.1 bits (117), Expect = 7e-06
Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 49/239 (20%)
Query: 338 YGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD 396
+GADV RL++ + + D + +L + + G S+
Sbjct: 638 FGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKES-NLETGEETSF- 695
Query: 397 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 456
ID++ ++ +K E+ E++Q K + FD+ D +
Sbjct: 696 ----IDRWLESRMNAAIKETYEAMENFQTRKAVKYA-----------LFDLQADVDW--- 737
Query: 457 TTSFTRRS---CQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 513
+ RR + VL+ +L + ++++AP PH AE++W+ + +G FV +
Sbjct: 738 ---YRRRGGVNHKDVLARYLETWIKLLAPFAPHFAEEMWEEVG-----NEG----FVSLA 785
Query: 514 KWPVLDEKW--RTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDD 570
K+P E + E Y LR V + E+A+ I +S +VYL+T +
Sbjct: 786 KFPEASEPAVDKEVEAAEEY-------LRNLVRDIQEIAK----IDASKPKRVYLYTSE 833
Score = 39.0 bits (91), Expect = 0.008
Identities = 47/230 (20%), Positives = 79/230 (34%), Gaps = 39/230 (16%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
K G DW + T DP Y+ ++ G I +G+ PV + P + + +L
Sbjct: 128 CKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDL 187
Query: 64 EYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ 123
EG V+ Y + + L + T P TV VN +
Sbjct: 188 LSGEG-VTIVEYILIKFE---------LEDG--AFYFVAATLRPETVYGVTNCWVNPTIT 235
Query: 124 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTL 183
Y + E+ G +K L QK K + +
Sbjct: 236 YVIAEV-----GGEKWITSK--EAFENLSYQKL-------------------KYKPIEEV 269
Query: 184 AGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT 233
G + +PV + P+ + +++ T GTG+V + P H +DY+
Sbjct: 270 PGKQFIGKKVHNPVVGPEVPI-LPAEFVDTTKGTGVVMSVPAHAPDDYIA 318
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 45.2 bits (108), Expect = 8e-06
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 34/135 (25%)
Query: 381 LGNL-HDWRVGNSIS---------YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQ 430
LGNL + R N S + L D+ L + E +++ + E+ E +F K +
Sbjct: 9 LGNLVN--RTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALE 66
Query: 431 IIQRFIIVDLSNFYFD------VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA--- 481
I + +N Y D +AK+ TVL LL ++R++A
Sbjct: 67 EIME--LARAANKYIDETAPWKLAKEE---------DPERLATVLY-VLLELLRILAILL 114
Query: 482 -PILPHLAEDVWQNL 495
P +P AE + L
Sbjct: 115 SPFMPETAEKILDQL 129
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 46.0 bits (109), Expect = 6e-05
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 5 KRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 64
+R G DW+ T+D + A E F ++ +G IYR + V+W + RTA+++ E++
Sbjct: 225 RRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVD 284
Query: 65 Y 65
Y
Sbjct: 285 Y 285
Score = 43.3 bits (102), Expect = 4e-04
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 253
VHP + R+ P++ + GTG V P H D+ ++ L ++ D+GK
Sbjct: 356 VHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINS 415
Query: 254 EAG-KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTK---KPTIFRATEQW 309
G +F+G+ AV++ L ++ + E + RT +P I QW
Sbjct: 416 NGGSEFAGMPRF-AAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMI---KPQW 471
Query: 310 FASVEGFRQAAMDAIG-----QVKWVPPQEAPGYGADVLRLWVSSV 350
F + + A+DA +++++P Q Y A+ R W+ ++
Sbjct: 472 FVNCSSMAKQALDAAIDGENKKLEFIPKQ----YLAEWKR-WLENI 512
Score = 39.9 bits (93), Expect = 0.005
Identities = 42/197 (21%), Positives = 80/197 (40%), Gaps = 12/197 (6%)
Query: 332 PQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYR----KLRGTLRYLLGNL-HD 386
P G D LR + S D I +LR + YR KL +R+ + L D
Sbjct: 704 PNGIAECGTDALRFALVSYTAQSD-KINLDILRVVG--YRQWCNKLWNAVRFAMSKLGDD 760
Query: 387 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 446
+ ++S + +P ++ L L + S ++Y+F + + + + +
Sbjct: 761 YTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIE 820
Query: 447 VAKDRLYTGGTT-SFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGS 505
K + R + Q L L + +R++ P +P + E++WQ LP +D +
Sbjct: 821 AIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQP---KDHT 877
Query: 506 AAEFVFESKWPVLDEKW 522
+ + S++P E W
Sbjct: 878 RKDSIMISEYPSAVEAW 894
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 45.9 bits (109), Expect = 6e-05
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGK--- 250
+HP+ + P+ + +Y+ E GTG V P H + D+ + KYGLPI +D K
Sbjct: 307 IHPLTGEKIPIWVA-NYVLMEYGTGAVMGVPAHDERDFEFAQKYGLPIKPVIDPAEKDLS 365
Query: 251 ----FTEE-----AGKFSGLDVLGDGNVAVVKYLDEQ 278
+TE+ +G+F+GL+ A++ L+++
Sbjct: 366 LTAAYTEDGVLVNSGEFNGLNSSE-ARNAIIDMLEKE 401
Score = 39.0 bits (91), Expect = 0.010
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 468 VLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 521
++ +L V V++P PHLAE++W+ L GS + +KWPV+DE
Sbjct: 730 LMLEYLKGFVTVLSPFAPHLAEELWEKL--------GSEPFIIDNAKWPVVDET 775
Score = 36.7 bits (85), Expect = 0.051
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 12 DWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVS 71
DW+ T DPEY +F ++ +G Y + V+W P+ T LA +++ +G
Sbjct: 116 DWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVD-SDGRSW 174
Query: 72 RSIYAVFR 79
R V +
Sbjct: 175 RGDTPVEK 182
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined
for this family, which includes archaeal and eukaryotic
cytoplasmic members. LeuRS catalyzes the transfer of
leucine to the 3'-end of its tRNA.
Length = 117
Score = 38.3 bits (90), Expect = 0.002
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 23/111 (20%)
Query: 390 GNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAK 449
++L ID++ L +L ++K E+YE+ QF + + +++
Sbjct: 25 ETEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEG-----------LYELQN 73
Query: 450 DRLYTGGTTSFTRRSCQTVLSAHLLS-----IVRVIAPILPHLAEDVWQNL 495
D + R ++ LL R++AP PHLAE++W L
Sbjct: 74 DL-------DWYRERGGAGMNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 40.3 bits (95), Expect = 0.003
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 27/126 (21%)
Query: 408 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKDRLYTGGTTSFT 461
++ + E+ E Y+F K + I +N Y D +AK+
Sbjct: 425 LAREALEAVAEAMEKYEFRKALEEIMAL--ASRANKYIDEQAPWKLAKED---------K 473
Query: 462 RRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPV 517
R TVL L +VRV+A P +P AE +W L + A F +
Sbjct: 474 RERLATVL-YLALELVRVLAILLYPFMPETAEKIWDQLGL-----EEDARNFTWLGARQP 527
Query: 518 LDEKWR 523
L +
Sbjct: 528 LLPGHK 533
Score = 32.2 bits (74), Expect = 0.93
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 19 TLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 64
T PE++ E F ++ G IY + + S L + +E
Sbjct: 97 TTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE 142
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial leucyl tRNA
synthetases. This domain is found in leucyl tRNA
synthetases (LeuRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain. In contrast to other class Ia
enzymes, the anticodon is not used as an identity
element in LeuRS (with exceptions such as Saccharomyces
cerevisiae and some other eukaryotes). No
anticodon-binding site can be defined for this family,
which includes bacterial and eukaryotic mitochondrial
members, as well as LeuRS from the archaeal
Halobacteria. LeuRS catalyzes the transfer of leucine to
the 3'-end of its tRNA.
Length = 117
Score = 37.2 bits (87), Expect = 0.005
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 21/128 (16%)
Query: 373 LRGTLRYL-----LGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFK 427
+ G R+L L + + +L D+ +L +K + E E +F
Sbjct: 6 VEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNT 65
Query: 428 IFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHL 487
I + L N + K VL L ++V ++AP PH+
Sbjct: 66 A---IAALME--LVNALYKYKKKD-----------AQHAAVLREALETLVLLLAPFAPHI 109
Query: 488 AEDVWQNL 495
AE++W+ L
Sbjct: 110 AEELWEEL 117
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 39.4 bits (93), Expect = 0.006
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 25/103 (24%)
Query: 401 IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKDRLYT 454
D L + E + I E+YE+ +F K + I + D +N Y D +AK
Sbjct: 410 ADPELLEEFEAAAEKIAEAYEAREFRKALREIMA--LADFANKYVDDNEPWKLAKQ---- 463
Query: 455 GGTTSFTRRSCQTVLS-----AHLLSIVRVIAPILPHLAEDVW 492
Q V S L+I + P+LP LAE
Sbjct: 464 ------DGERLQAVCSVGLNLFRALAIY--LKPVLPELAERAE 498
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 37.2 bits (87), Expect = 0.020
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 2 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHW 50
KR G DW + T DPEY +F ++ +G Y+ + PV+W
Sbjct: 77 EQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNW 125
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 37.6 bits (88), Expect = 0.021
Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 42/182 (23%)
Query: 338 YGADVLRLWV---SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNL--------HD 386
YG D +R ++ GD ++ L LGNL
Sbjct: 317 YGVDAVRYFLLREIPFGQDGDF--------SREAFINRINADLANDLGNLAQRTLSMIAK 368
Query: 387 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 446
G L D+ L +++ +R + ++ F K + I +V +N Y D
Sbjct: 369 NFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAI--LALVRAANKYID 426
Query: 447 ------VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLP 496
+AK TVL LL ++R IA P++P LA + L
Sbjct: 427 EQAPWSLAKTD----------PERLATVLYT-LLEVLRGIAVLLQPVMPELAAKILDQLG 475
Query: 497 FA 498
Sbjct: 476 VE 477
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 37.1 bits (87), Expect = 0.026
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 23/118 (19%)
Query: 388 RVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD- 446
G + +L D+ + + E + K + E E+ +F K + I + +N Y D
Sbjct: 404 YFGGIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIME--LAREANKYLDE 461
Query: 447 -----VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNL 495
+AK R TVL L++VR++A P LP A+ +W+ L
Sbjct: 462 KAPWKLAKTD----------RERAATVLY-TALNLVRLLAVLLYPFLPFSAQKIWEML 508
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 33.5 bits (77), Expect = 0.42
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 475 SIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDE 520
R+I PI PH AE VW+ + ++G F + WPV E
Sbjct: 857 VQTRLITPICPHYAEHVWREI----LKKEG----FAVTAGWPVAGE 894
>gnl|CDD|224860 COG1949, Orn, Oligoribonuclease (3'->5' exoribonuclease) [RNA
processing and modification].
Length = 184
Score = 31.2 bits (71), Expect = 1.2
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 259 SGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 318
+ L++L +G V + DEQ++ M+ +W T+ TE+ AS +
Sbjct: 35 ANLNILAEGPVIAIHQSDEQLAK-MD---------EWNTETHGRSGLTERVKASTVTEAE 84
Query: 319 AAMDAIGQVK-WVPPQEAP 336
A + +K WVP +P
Sbjct: 85 AEAQTLDFLKKWVPKGVSP 103
>gnl|CDD|234403 TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target.
Members of this protein family include secretion targets
for the two main variants of type VII secretion systems
(T7SS), one found in the Actinobacteria, one found in
the Firmicutes. This model was derived through iteration
from pfam06013. The best characterized member of this
family is ESAT-6 from Mycobacterium tuberculosis.
Members of this family usually are ~100 amino acids in
length but occasionally have a long C-terminal
extension.
Length = 90
Score = 29.5 bits (67), Expect = 1.5
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 356 VMIGPQVLRQMSDIYRKLRGTLRYLLGNLH--------DWRVGNSISYDDL-----PMID 402
+ + P+ LRQ + + K L+ LL L W + ++ P +
Sbjct: 2 IKVDPEELRQAAARFGKTAQELQQLLQRLRSEIDALQGTWEGAAADAFQAEFQQWDPAAE 61
Query: 403 QY--ALFQLENIVKNIRESYES 422
+ AL ++ ++ + +E
Sbjct: 62 RLINALQEISEALRQAADKFEQ 83
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 31.3 bits (72), Expect = 2.0
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 39/105 (37%)
Query: 410 ENIVKNIRESYESYQFFK----IFQIIQRFIIVDLSNFYFD------VAKD-----RLYT 454
E +KN E E QF + ++++I R +N Y D +AKD RL
Sbjct: 392 EETLKNYEELMEELQFSRALEEVWKLISR------ANKYIDETAPWVLAKDEGKKERL-- 443
Query: 455 GGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNL 495
TV+ HL +R +A P +P ++ +++ L
Sbjct: 444 -----------ATVM-YHLAESLRKVAVLLSPFMPETSKKIFEQL 476
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 30.8 bits (70), Expect = 2.4
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 408 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD--RLYTGGTTSFTRRSC 465
+ ++ I E+ ES++F K + I + D N Y D K C
Sbjct: 418 LINEALEQIDEAIESFEFRKALREI--MKLADRGNKYIDENKPWELFKQSPRLKELLAVC 475
Query: 466 QTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYT 500
+ +LSI+ + PI+P L+E + + L F
Sbjct: 476 --SMLIRVLSIL--LYPIMPKLSEKILKFLNFELE 506
>gnl|CDD|216525 pfam01486, K-box, K-box region. The K-box region is commonly found
associated with SRF-type transcription factors see
pfam00319. The K-box is a possible coiled-coil
structure. Possible role in multimer formation.
Length = 100
Score = 29.0 bits (66), Expect = 2.4
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 363 LRQMSDIYRKLRGTLRYLLG-NLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRE 418
++ L+ R+LLG +L S+S +L ++Q QLEN +K+IR
Sbjct: 21 AAKLKKQNENLQREQRHLLGEDL------GSLSLKELQQLEQ----QLENGLKHIRS 67
>gnl|CDD|182360 PRK10293, PRK10293, acyl-CoA esterase; Provisional.
Length = 136
Score = 29.6 bits (66), Expect = 2.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 258 FSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKP 300
L+ +G+GN+ V LD + I ++ E P D RTK+P
Sbjct: 9 LEALNAMGEGNM--VGLLDIRFEHIGDDTLEATMPVDSRTKQP 49
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 29.6 bits (66), Expect = 7.4
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 574 ASRLREMCTAKHDADTLQRIFI-ISQVEVLPSTPNGLIRNIPYSG 617
A+ L++ C AD L+ +F+ + + VL PN ++ N+PY G
Sbjct: 1359 ANILKDTCRFGVSADYLKNVFVQLCGMLVLAYKPNDILSNMPYIG 1403
>gnl|CDD|239104 cd02424, Peptidase_C39E, A sub-family of peptidase family C39.
Peptidase family C39 mostly contains
bacteriocin-processing endopeptidases from bacteria. The
cysteine peptidases in family C39 cleave the
"double-glycine" leader peptides from the precursors of
various bacteriocins (mostly non-lantibiotic). The
cleavage is mediated by the transporter as part of the
secretion process. Bacteriocins are antibiotic proteins
secreted by some species of bacteria that inhibit the
growth of other bacterial species. The bacteriocin is
synthesized as a precursor with an N-terminal leader
peptide, and processing involves removal of the leader
peptide by cleavage at a Gly-Gly bond, followed by
translocation of the mature bacteriocin across the
cytoplasmic membrane. Most endopeptidases of family C39
are N-terminal domains in larger proteins (ABC
transporters) that serve both functions. The proposed
protease active site is conserved in this sub-family,
which contains Colicin V perocessing peptidase.
Length = 129
Score = 28.1 bits (63), Expect = 7.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 406 LFQLENIVKNIRESYESYQ--FFKIFQIIQRFIIVDLSNFY 444
++ LEN+ K ESYQ F + ++ +FII+ SN
Sbjct: 47 IYDLENLAKKFGLETESYQGSFLEFLELKNKFIILLKSNGL 87
>gnl|CDD|237386 PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional.
Length = 181
Score = 28.6 bits (65), Expect = 7.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 15/50 (30%)
Query: 534 GKILELRTEVNKVLE---VARTGKLIGSSLEAKVYLFTDDASLASRLREM 580
GK +EL T V+ L V + IG KV DAS+ ++LR +
Sbjct: 136 GKKVELDTAVDPSLIGGVVVK----IGD----KVL----DASVRTQLRRL 173
>gnl|CDD|235287 PRK04342, PRK04342, DNA topoisomerase VI subunit A; Provisional.
Length = 367
Score = 29.1 bits (66), Expect = 8.1
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 400 MIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTS 459
+ AL +L + + I E E + + LSN +D K L G S
Sbjct: 9 EDREKALKKLRELAEKIYEDIEKGKRPVL-----EIPKRTLSNIEYDEKKGLLVLGDKKS 63
Query: 460 FTRRSCQTVLSA-HLLSIVRVIAPILPHLAED 490
+RS V A + V + I L E+
Sbjct: 64 --KRSFLNVKQAKKFMQTVLMAEFIKELLEEN 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.415
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,402,929
Number of extensions: 3531910
Number of successful extensions: 2971
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2868
Number of HSP's successfully gapped: 103
Length of query: 678
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 575
Effective length of database: 6,369,140
Effective search space: 3662255500
Effective search space used: 3662255500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.4 bits)