Query 005760
Match_columns 678
No_of_seqs 441 out of 5059
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:43:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4asz_A BDNF/NT-3 growth factor 100.0 7.2E-55 2.5E-59 441.3 11.6 260 391-673 12-290 (299)
2 3omv_A RAF proto-oncogene seri 100.0 1E-53 3.4E-58 432.7 18.4 264 390-674 34-302 (307)
3 4aoj_A High affinity nerve gro 100.0 5E-54 1.7E-58 441.2 15.0 258 392-672 41-319 (329)
4 4gt4_A Tyrosine-protein kinase 100.0 7.3E-54 2.5E-58 435.8 11.9 256 392-670 26-304 (308)
5 4fih_A Serine/threonine-protei 100.0 8.8E-52 3E-56 423.5 19.9 250 391-665 73-323 (346)
6 4g3f_A NF-kappa-beta-inducing 100.0 3.1E-51 1.1E-55 418.3 18.4 256 392-674 58-318 (336)
7 4b9d_A Serine/threonine-protei 100.0 8.1E-52 2.8E-56 424.4 14.1 250 391-665 23-276 (350)
8 4aw0_A HPDK1, 3-phosphoinositi 100.0 5E-52 1.7E-56 418.9 10.6 248 392-664 32-283 (311)
9 4fie_A Serine/threonine-protei 100.0 1.3E-50 4.3E-55 425.1 21.0 250 391-665 150-400 (423)
10 4ase_A Vascular endothelial gr 100.0 1.1E-51 3.7E-56 427.2 12.2 271 383-675 55-350 (353)
11 3hmm_A TGF-beta receptor type- 100.0 3.8E-51 1.3E-55 417.0 15.6 273 392-673 3-298 (303)
12 3fpq_A Serine/threonine-protei 100.0 2E-50 6.7E-55 405.6 19.5 244 395-665 29-282 (290)
13 3hyh_A Carbon catabolite-derep 100.0 2E-50 6.8E-55 401.9 15.4 245 392-665 13-262 (275)
14 3ubd_A Ribosomal protein S6 ki 100.0 1.9E-50 6.4E-55 407.6 7.7 247 392-665 24-281 (304)
15 4g31_A Eukaryotic translation 100.0 2E-48 6.9E-53 394.8 16.1 249 392-665 5-279 (299)
16 4f9c_A Cell division cycle 7-r 100.0 4.8E-46 1.6E-50 387.8 17.2 199 389-596 18-249 (361)
17 4b99_A Mitogen-activated prote 100.0 1E-45 3.5E-50 389.3 18.6 269 391-665 53-344 (398)
18 3uto_A Twitchin; kinase, muscl 100.0 4.2E-45 1.4E-49 403.7 16.5 252 391-665 156-410 (573)
19 3v5w_A G-protein coupled recep 100.0 1.4E-44 4.7E-49 395.9 19.7 248 391-665 188-449 (689)
20 2qkw_B Protein kinase; three-h 100.0 7.6E-44 2.6E-48 368.8 21.1 279 385-672 32-315 (321)
21 3s95_A LIMK-1, LIM domain kina 100.0 3.1E-43 1.1E-47 362.4 22.4 265 391-676 9-286 (310)
22 3soc_A Activin receptor type-2 100.0 1.8E-43 6.3E-48 365.9 17.3 276 391-673 23-319 (322)
23 3uim_A Brassinosteroid insensi 100.0 6.6E-43 2.3E-47 362.7 21.5 280 380-669 18-308 (326)
24 3fxz_A Serine/threonine-protei 100.0 1.7E-42 5.8E-47 354.2 20.9 251 390-665 18-269 (297)
25 2psq_A Fibroblast growth facto 100.0 4.9E-43 1.7E-47 369.3 17.1 261 391-674 80-366 (370)
26 3cbl_A C-FES, proto-oncogene t 100.0 9E-44 3.1E-48 376.3 10.2 260 391-673 113-375 (377)
27 3kul_A Ephrin type-A receptor 100.0 5.4E-43 1.9E-47 362.6 14.2 260 391-673 48-314 (325)
28 2nru_A Interleukin-1 receptor- 100.0 3.2E-41 1.1E-45 346.9 25.7 281 380-673 13-307 (307)
29 3p86_A Serine/threonine-protei 100.0 1.1E-42 3.8E-47 357.5 14.1 261 388-673 33-299 (309)
30 4hcu_A Tyrosine-protein kinase 100.0 8E-43 2.7E-47 351.6 12.7 258 391-673 9-267 (269)
31 3lb7_A RAF proto-oncogene seri 100.0 4.2E-42 1.4E-46 352.9 17.2 264 390-674 34-302 (307)
32 3sxs_A Cytoplasmic tyrosine-pr 100.0 9.7E-43 3.3E-47 350.8 12.1 258 391-673 7-265 (268)
33 3vhe_A Vascular endothelial gr 100.0 2.3E-42 7.8E-47 363.7 14.7 271 382-674 12-357 (359)
34 3ugc_A Tyrosine-protein kinase 100.0 1.2E-42 4.1E-47 355.4 12.0 272 391-674 9-293 (295)
35 3fe3_A MAP/microtubule affinit 100.0 2.3E-42 7.8E-47 357.6 13.5 248 390-665 13-264 (328)
36 2c30_A Serine/threonine-protei 100.0 2.8E-41 9.7E-46 349.1 21.5 260 381-665 24-294 (321)
37 3q4u_A Activin receptor type-1 100.0 1.9E-41 6.4E-46 347.5 20.1 265 391-670 7-300 (301)
38 2qol_A Ephrin receptor; recept 100.0 2E-42 6.7E-47 364.9 13.0 260 391-673 44-310 (373)
39 3tki_A Serine/threonine-protei 100.0 7.8E-42 2.7E-46 353.5 16.8 253 391-665 6-261 (323)
40 3zgw_A Maternal embryonic leuc 100.0 1.1E-41 3.8E-46 354.4 17.3 250 390-665 8-260 (347)
41 3niz_A Rhodanese family protei 100.0 2.4E-41 8.1E-46 348.1 19.5 268 390-665 19-300 (311)
42 3gen_A Tyrosine-protein kinase 100.0 3.9E-42 1.3E-46 349.3 13.3 259 390-673 22-281 (283)
43 1t46_A HOMO sapiens V-KIT hard 100.0 4.7E-42 1.6E-46 354.1 14.1 266 390-677 21-312 (313)
44 1tki_A Titin; serine kinase, m 100.0 1.2E-41 4.1E-46 351.6 17.0 251 391-665 4-257 (321)
45 2yab_A Death-associated protei 100.0 2.3E-41 7.9E-46 354.2 19.0 252 390-665 10-272 (361)
46 3l9p_A Anaplastic lymphoma kin 100.0 2.2E-42 7.6E-47 364.1 10.2 260 391-673 70-346 (367)
47 1luf_A Muscle-specific tyrosin 100.0 2.8E-42 9.6E-47 360.6 10.8 265 388-675 43-338 (343)
48 3tt0_A Basic fibroblast growth 100.0 9.6E-42 3.3E-46 361.5 15.0 262 390-674 67-354 (382)
49 4eqm_A Protein kinase; transfe 100.0 1.1E-41 3.9E-46 347.6 14.8 260 391-671 10-274 (294)
50 1o6l_A RAC-beta serine/threoni 100.0 2.5E-41 8.4E-46 350.8 17.4 248 391-665 4-260 (337)
51 1rjb_A FL cytokine receptor; k 100.0 9.1E-42 3.1E-46 356.9 14.2 263 390-674 43-336 (344)
52 3poz_A Epidermal growth factor 100.0 4.6E-42 1.6E-46 356.2 11.7 259 391-673 14-279 (327)
53 1k9a_A Carboxyl-terminal SRC k 100.0 2.2E-41 7.4E-46 366.2 17.1 253 390-673 191-446 (450)
54 1csn_A Casein kinase-1; phosph 100.0 9.4E-41 3.2E-45 341.8 20.7 264 391-675 9-286 (298)
55 2ivs_A Proto-oncogene tyrosine 100.0 1.1E-41 3.7E-46 351.5 13.6 261 390-673 21-312 (314)
56 3og7_A AKAP9-BRAF fusion prote 100.0 2.5E-41 8.6E-46 344.4 15.7 261 390-671 22-287 (289)
57 4f0f_A Serine/threonine-protei 100.0 3.8E-41 1.3E-45 342.7 17.1 253 391-670 18-287 (287)
58 1mp8_A Focal adhesion kinase 1 100.0 1.2E-41 4E-46 345.4 13.2 262 390-676 13-280 (281)
59 3qup_A Tyrosine-protein kinase 100.0 1.1E-41 3.8E-46 353.0 13.1 261 390-673 21-299 (323)
60 3op5_A Serine/threonine-protei 100.0 1.5E-41 5.3E-46 357.8 14.3 271 390-674 33-331 (364)
61 2izr_A Casein kinase I isoform 100.0 1.5E-40 5E-45 345.5 21.5 262 391-674 8-283 (330)
62 3mdy_A Bone morphogenetic prot 100.0 2.3E-40 7.7E-45 345.3 22.9 272 385-674 30-333 (337)
63 2y0a_A Death-associated protei 100.0 8.9E-41 3E-45 346.1 19.4 251 391-665 10-271 (326)
64 4aw2_A Serine/threonine-protei 100.0 1.3E-41 4.3E-46 364.1 13.3 261 385-665 67-338 (437)
65 3h4j_B AMPK kdaid, SNF1-like p 100.0 2.9E-41 9.8E-46 349.9 15.1 246 391-665 8-258 (336)
66 4euu_A Serine/threonine-protei 100.0 1E-40 3.6E-45 345.0 19.1 274 391-670 8-307 (319)
67 3t9t_A Tyrosine-protein kinase 100.0 1.1E-41 3.7E-46 342.9 11.4 258 391-673 7-265 (267)
68 3kex_A Receptor tyrosine-prote 100.0 7E-41 2.4E-45 347.1 17.6 258 391-672 12-276 (325)
69 3o0g_A Cell division protein k 100.0 9.7E-41 3.3E-45 340.6 18.1 268 392-665 2-282 (292)
70 1ob3_A PFPK5, cell division co 100.0 3E-41 1E-45 343.6 13.9 267 392-665 2-280 (288)
71 3c0i_A Peripheral plasma membr 100.0 3.2E-41 1.1E-45 353.1 14.2 252 391-665 23-286 (351)
72 1qcf_A Haematopoetic cell kina 100.0 7.9E-42 2.7E-46 370.3 9.8 257 390-672 186-444 (454)
73 1kob_A Twitchin; kinase, intra 100.0 1.3E-40 4.6E-45 351.6 18.7 252 391-665 50-304 (387)
74 4dc2_A Protein kinase C IOTA t 100.0 5.2E-41 1.8E-45 354.6 15.1 249 390-660 50-307 (396)
75 2pvf_A Fibroblast growth facto 100.0 4.7E-41 1.6E-45 349.8 14.3 262 390-674 33-320 (334)
76 3g2f_A Bone morphogenetic prot 100.0 7.1E-41 2.4E-45 349.0 15.6 279 390-677 11-323 (336)
77 3soa_A Calcium/calmodulin-depe 100.0 2.2E-40 7.7E-45 355.8 19.9 254 389-665 8-267 (444)
78 3txo_A PKC-L, NPKC-ETA, protei 100.0 4.8E-41 1.6E-45 350.9 14.2 249 390-665 21-280 (353)
79 4fr4_A YANK1, serine/threonine 100.0 3.6E-40 1.2E-44 347.0 20.9 250 391-665 14-271 (384)
80 3dtc_A Mitogen-activated prote 100.0 2.9E-41 9.8E-46 340.6 11.6 251 391-670 6-271 (271)
81 3lzb_A Epidermal growth factor 100.0 3.1E-41 1.1E-45 349.7 12.2 259 391-673 14-279 (327)
82 4e5w_A Tyrosine-protein kinase 100.0 1.3E-40 4.5E-45 341.4 16.5 263 391-671 20-301 (302)
83 1opk_A P150, C-ABL, proto-onco 100.0 3.2E-41 1.1E-45 369.0 12.4 255 391-670 219-476 (495)
84 2pmi_A Negative RE, cyclin-dep 100.0 3.3E-40 1.1E-44 340.7 19.3 268 391-665 4-293 (317)
85 2bdw_A Hypothetical protein K1 100.0 7.5E-41 2.6E-45 351.3 14.7 253 390-666 27-285 (362)
86 3e7e_A HBUB1, BUB1A, mitotic c 100.0 4.3E-40 1.5E-44 346.9 20.5 253 390-673 63-340 (365)
87 2zv2_A Calcium/calmodulin-depe 100.0 8E-41 2.7E-45 342.3 14.5 249 391-665 12-292 (298)
88 1fot_A TPK1 delta, CAMP-depend 100.0 1.7E-40 5.8E-45 342.0 16.9 245 391-665 5-258 (318)
89 3dbq_A Dual specificity protei 100.0 1.4E-40 4.6E-45 347.6 16.2 252 391-666 8-274 (343)
90 3gni_B Strad alpha; kinase fol 100.0 2.1E-40 7.3E-45 352.4 17.9 272 390-665 23-333 (389)
91 3v8s_A RHO-associated protein 100.0 3.4E-41 1.2E-45 358.0 11.7 257 386-665 63-329 (410)
92 1u59_A Tyrosine-protein kinase 100.0 9.8E-41 3.4E-45 339.7 14.6 261 392-676 9-276 (287)
93 2w4o_A Calcium/calmodulin-depe 100.0 2.2E-40 7.5E-45 346.3 17.5 251 390-665 51-305 (349)
94 3kmu_A ILK, integrin-linked ki 100.0 7.5E-41 2.6E-45 337.4 13.4 252 391-672 9-270 (271)
95 2x4f_A Myosin light chain kina 100.0 2.7E-40 9.1E-45 348.4 18.0 246 397-665 94-342 (373)
96 2xir_A Vascular endothelial gr 100.0 1.3E-40 4.6E-45 343.7 15.4 272 382-675 17-313 (316)
97 2i1m_A Macrophage colony-stimu 100.0 7.7E-41 2.6E-45 348.2 13.4 266 388-675 42-329 (333)
98 3brb_A Proto-oncogene tyrosine 100.0 1.1E-40 3.8E-45 343.8 14.3 263 389-674 31-310 (313)
99 3c1x_A Hepatocyte growth facto 100.0 4.4E-41 1.5E-45 354.1 11.2 259 393-674 90-357 (373)
100 2eva_A TAK1 kinase - TAB1 chim 100.0 4.9E-40 1.7E-44 337.7 18.7 255 391-673 7-264 (307)
101 3lxp_A Non-receptor tyrosine-p 100.0 1.4E-40 4.9E-45 343.6 14.8 274 392-676 30-314 (318)
102 1xjd_A Protein kinase C, theta 100.0 4.7E-41 1.6E-45 349.6 11.2 250 388-664 13-268 (345)
103 3f66_A Hepatocyte growth facto 100.0 3E-40 1E-44 338.0 17.1 261 391-674 24-293 (298)
104 3qd2_B Eukaryotic translation 100.0 2.5E-40 8.5E-45 344.1 16.6 250 391-665 5-325 (332)
105 1b6c_B TGF-B superfamily recep 100.0 9.8E-40 3.4E-44 341.2 21.2 276 384-674 34-338 (342)
106 4hgt_A Casein kinase I isoform 100.0 8.2E-40 2.8E-44 334.4 20.1 265 390-675 7-283 (296)
107 3kfa_A Tyrosine-protein kinase 100.0 1E-40 3.5E-45 339.8 13.3 259 390-673 11-272 (288)
108 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 3.4E-41 1.2E-45 364.9 10.4 256 390-671 182-439 (452)
109 2w1i_A JAK2; chromosomal rearr 100.0 3.5E-40 1.2E-44 342.1 17.4 273 391-675 40-325 (326)
110 3uc3_A Serine/threonine-protei 100.0 4.9E-40 1.7E-44 345.2 18.6 254 390-666 18-275 (361)
111 3f3z_A Calcium/calmodulin-depe 100.0 3.3E-40 1.1E-44 334.0 16.5 251 390-665 7-261 (277)
112 2vd5_A DMPK protein; serine/th 100.0 1.8E-40 6.1E-45 352.7 15.2 259 386-665 55-327 (412)
113 3pls_A Macrophage-stimulating 100.0 2.5E-40 8.6E-45 338.6 15.8 261 393-675 22-290 (298)
114 2yex_A Serine/threonine-protei 100.0 5.6E-40 1.9E-44 332.1 18.1 253 391-665 6-261 (276)
115 3cc6_A Protein tyrosine kinase 100.0 1.3E-40 4.3E-45 337.8 13.3 259 390-673 10-274 (281)
116 2zmd_A Dual specificity protei 100.0 3.5E-40 1.2E-44 349.9 17.3 250 392-665 56-320 (390)
117 3lxl_A Tyrosine-protein kinase 100.0 5.6E-41 1.9E-45 348.2 10.7 274 391-673 22-304 (327)
118 2wqm_A Serine/threonine-protei 100.0 3.7E-40 1.3E-44 339.4 16.6 263 391-675 31-300 (310)
119 3gxj_A TGF-beta receptor type- 100.0 1.4E-41 4.7E-46 348.9 5.8 268 391-673 2-298 (303)
120 1mqb_A Ephrin type-A receptor 100.0 1.7E-40 5.9E-45 345.2 14.1 259 392-673 44-310 (333)
121 3a8x_A Protein kinase C IOTA t 100.0 2.1E-40 7.1E-45 345.4 14.7 248 391-660 8-264 (345)
122 1qpc_A LCK kinase; alpha beta 100.0 1.5E-40 5.2E-45 336.9 13.2 259 390-674 11-271 (279)
123 3uzp_A CKI-delta, CKID, casein 100.0 1.1E-39 3.9E-44 333.4 19.7 264 391-675 8-283 (296)
124 2buj_A Serine/threonine-protei 100.0 4.8E-40 1.6E-44 339.7 16.8 260 391-671 28-305 (317)
125 1rdq_E PKA C-alpha, CAMP-depen 100.0 2E-40 6.9E-45 346.0 13.9 244 392-665 41-293 (350)
126 2jii_A Serine/threonine-protei 100.0 2E-40 6.9E-45 347.6 13.9 266 391-675 41-339 (352)
127 4fvq_A Tyrosine-protein kinase 100.0 2.2E-40 7.4E-45 337.6 13.6 253 391-673 7-276 (289)
128 4eut_A Serine/threonine-protei 100.0 2.8E-40 9.5E-45 351.9 14.9 277 391-673 8-310 (396)
129 3cok_A Serine/threonine-protei 100.0 4E-40 1.4E-44 333.6 15.4 250 390-665 9-262 (278)
130 3dls_A PAS domain-containing s 100.0 7.3E-40 2.5E-44 340.3 17.4 244 389-666 21-275 (335)
131 2v62_A Serine/threonine-protei 100.0 1.3E-40 4.3E-45 348.1 11.8 265 391-670 36-326 (345)
132 2a2a_A Death-associated protei 100.0 9.1E-40 3.1E-44 338.1 18.1 251 391-665 11-272 (321)
133 3kn6_A Ribosomal protein S6 ki 100.0 5.8E-40 2E-44 339.7 16.6 247 397-664 16-269 (325)
134 2ozo_A Tyrosine-protein kinase 100.0 2.4E-40 8.3E-45 370.5 14.5 252 399-674 343-600 (613)
135 2i0e_A Protein kinase C-beta I 100.0 2.1E-40 7.1E-45 345.9 12.8 249 390-665 18-276 (353)
136 3a62_A Ribosomal protein S6 ki 100.0 2.8E-40 9.7E-45 342.5 13.8 248 391-665 16-276 (327)
137 3p1a_A MYT1 kinase, membrane-a 100.0 4.4E-40 1.5E-44 338.8 15.1 244 392-665 57-304 (311)
138 3ork_A Serine/threonine protei 100.0 6.9E-41 2.3E-45 344.9 9.0 259 391-670 11-279 (311)
139 3mtl_A Cell division protein k 100.0 2.5E-40 8.6E-45 342.6 13.3 265 392-665 2-281 (324)
140 2y94_A 5'-AMP-activated protei 100.0 5.4E-40 1.9E-44 355.0 16.1 247 391-665 15-266 (476)
141 3g33_A Cell division protein k 100.0 1.3E-39 4.4E-44 335.0 18.1 268 390-665 7-296 (308)
142 3oz6_A Mitogen-activated prote 100.0 5.8E-40 2E-44 348.8 15.9 269 389-666 6-329 (388)
143 3hko_A Calcium/calmodulin-depe 100.0 5.4E-40 1.8E-44 343.6 15.4 259 387-665 21-330 (345)
144 1p4o_A Insulin-like growth fac 100.0 1.9E-40 6.6E-45 343.5 11.6 261 388-671 21-298 (322)
145 4agu_A Cyclin-dependent kinase 100.0 1.2E-39 4.3E-44 335.6 17.5 265 392-665 3-284 (311)
146 3kk8_A Calcium/calmodulin depe 100.0 2.2E-39 7.5E-44 329.2 19.0 251 391-665 5-261 (284)
147 2ac3_A MAP kinase-interacting 100.0 6.2E-40 2.1E-44 338.7 14.9 267 391-665 11-295 (316)
148 2eue_A Carbon catabolite derep 100.0 1.3E-39 4.5E-44 329.2 17.0 246 391-665 12-262 (275)
149 3fdn_A Serine/threonine-protei 100.0 5.4E-40 1.9E-44 332.8 14.0 247 391-666 8-258 (279)
150 2yfx_A Tyrosine-protein kinase 100.0 2.6E-40 9E-45 343.2 11.6 261 390-673 28-305 (327)
151 1xbb_A Tyrosine-protein kinase 100.0 4.2E-40 1.4E-44 335.8 12.9 261 390-675 14-282 (291)
152 3ttj_A Mitogen-activated prote 100.0 1.7E-39 5.9E-44 351.8 18.5 261 391-665 61-355 (464)
153 1byg_A CSK, protein (C-termina 100.0 2.4E-40 8.3E-45 335.2 11.0 252 391-673 20-274 (278)
154 3bhy_A Death-associated protei 100.0 3.1E-39 1.1E-43 327.9 19.0 256 392-671 5-273 (283)
155 1u5q_A Serine/threonine protei 100.0 1E-39 3.5E-44 340.8 15.5 246 392-666 54-306 (348)
156 3mi9_A Cell division protein k 100.0 5.6E-39 1.9E-43 336.6 21.1 271 391-665 16-311 (351)
157 3is5_A Calcium-dependent prote 100.0 1.7E-39 5.7E-44 330.2 16.6 250 391-665 21-278 (285)
158 3i6u_A CDS1, serine/threonine- 100.0 2.9E-39 9.9E-44 346.2 18.9 253 389-665 132-399 (419)
159 1fvr_A Tyrosine-protein kinase 100.0 4.3E-40 1.5E-44 341.6 12.0 258 391-674 24-302 (327)
160 2r5t_A Serine/threonine-protei 100.0 3.8E-40 1.3E-44 346.3 11.5 248 391-665 37-289 (373)
161 3gbz_A Kinase, CMGC CDK; ssgci 100.0 8.2E-40 2.8E-44 339.6 13.6 272 385-665 27-318 (329)
162 2h34_A Serine/threonine-protei 100.0 2.8E-39 9.7E-44 332.5 17.5 263 388-673 30-297 (309)
163 2acx_A G protein-coupled recep 100.0 1.2E-39 4.2E-44 356.7 15.6 250 391-665 183-444 (576)
164 2h8h_A Proto-oncogene tyrosine 100.0 1.5E-40 5.3E-45 366.9 8.5 256 390-671 265-522 (535)
165 3byv_A Rhoptry kinase; malaria 100.0 2.7E-40 9.2E-45 349.9 9.9 249 391-674 72-370 (377)
166 3rp9_A Mitogen-activated prote 100.0 1.8E-39 6.2E-44 352.8 16.6 195 391-590 52-280 (458)
167 3n9x_A Phosphotransferase; mal 100.0 2.3E-39 7.7E-44 348.7 17.0 201 390-595 24-253 (432)
168 1nxk_A MAP kinase-activated pr 100.0 6.5E-39 2.2E-43 341.1 20.3 249 392-666 61-322 (400)
169 1ua2_A CAK, cell division prot 100.0 1.3E-39 4.6E-44 340.4 14.8 270 388-665 6-291 (346)
170 3llt_A Serine/threonine kinase 100.0 2.9E-39 1E-43 340.0 17.3 206 381-596 24-261 (360)
171 2a19_B Interferon-induced, dou 100.0 2.6E-39 8.9E-44 328.6 16.3 250 391-675 10-277 (284)
172 4ejn_A RAC-alpha serine/threon 100.0 4.2E-40 1.4E-44 356.3 11.1 248 391-665 147-404 (446)
173 3ll6_A Cyclin G-associated kin 100.0 1.7E-39 5.7E-44 338.6 15.2 256 391-673 27-309 (337)
174 1t4h_A Serine/threonine-protei 100.0 7.9E-39 2.7E-43 326.1 19.5 246 393-665 27-282 (290)
175 3rgz_A Protein brassinosteroid 100.0 1.9E-38 6.5E-43 366.3 25.1 301 2-319 373-746 (768)
176 4fl3_A Tyrosine-protein kinase 100.0 1E-39 3.5E-44 366.2 14.0 253 398-675 375-634 (635)
177 3pg1_A Mitogen-activated prote 100.0 2.9E-39 1E-43 340.3 16.6 275 383-665 13-316 (362)
178 2pml_X PFPK7, Ser/Thr protein 100.0 3.6E-39 1.2E-43 337.7 16.7 264 391-665 30-322 (348)
179 2qr7_A Ribosomal protein S6 ki 100.0 4.1E-40 1.4E-44 342.8 9.1 252 390-665 20-277 (342)
180 1u46_A ACK-1, activated CDC42 100.0 4.7E-40 1.6E-44 335.4 9.3 260 391-673 17-285 (291)
181 2jam_A Calcium/calmodulin-depe 100.0 6.8E-39 2.3E-43 329.0 17.9 251 390-665 7-261 (304)
182 3mwu_A Calmodulin-domain prote 100.0 3.7E-39 1.3E-43 352.8 16.8 251 390-665 20-276 (486)
183 2j7t_A Serine/threonine-protei 100.0 2E-39 6.7E-44 332.7 13.7 253 390-665 17-275 (302)
184 3sv0_A Casein kinase I-like; t 100.0 1.3E-38 4.5E-43 344.8 20.9 262 391-673 6-279 (483)
185 2y7j_A Phosphorylase B kinase 100.0 5.2E-39 1.8E-43 338.1 17.2 255 387-665 89-359 (365)
186 2vgo_A Serine/threonine-protei 100.0 3E-39 1E-43 328.2 14.8 246 391-665 13-262 (284)
187 3com_A Serine/threonine-protei 100.0 1E-38 3.6E-43 329.2 19.0 252 389-665 26-278 (314)
188 2clq_A Mitogen-activated prote 100.0 1.2E-38 4.2E-43 325.6 19.1 250 393-665 23-278 (295)
189 2vwi_A Serine/threonine-protei 100.0 1.5E-39 5E-44 333.8 12.1 264 388-665 11-287 (303)
190 3c4z_A Rhodopsin kinase; Ser/T 100.0 4.2E-39 1.4E-43 351.8 16.4 253 391-665 184-448 (543)
191 2rku_A Serine/threonine-protei 100.0 2.2E-39 7.7E-44 330.9 13.2 248 391-665 14-265 (294)
192 3a7i_A MST3 kinase, serine/thr 100.0 1.6E-38 5.4E-43 326.1 19.4 249 391-666 21-271 (303)
193 3q5i_A Protein kinase; CDPK, m 100.0 8.4E-39 2.9E-43 351.4 18.6 251 390-665 34-301 (504)
194 4aaa_A Cyclin-dependent kinase 100.0 2.7E-39 9.1E-44 336.1 13.7 267 391-665 24-306 (331)
195 3lij_A Calcium/calmodulin depe 100.0 4.7E-39 1.6E-43 352.5 16.1 250 391-665 36-291 (494)
196 3nsz_A CK II alpha, casein kin 100.0 5.3E-39 1.8E-43 333.9 15.5 262 391-665 35-319 (330)
197 3q60_A ROP5B; pseudokinase, tr 100.0 2.3E-39 8E-44 342.0 12.9 262 391-673 61-362 (371)
198 1cm8_A Phosphorylated MAP kina 100.0 3.5E-39 1.2E-43 339.5 14.0 260 391-665 24-307 (367)
199 2xrw_A Mitogen-activated prote 100.0 1.6E-38 5.6E-43 335.3 19.0 261 391-665 24-318 (371)
200 2owb_A Serine/threonine-protei 100.0 2.5E-39 8.4E-44 336.8 12.4 248 391-665 40-291 (335)
201 3fme_A Dual specificity mitoge 100.0 5.2E-39 1.8E-43 327.5 14.1 251 390-665 5-266 (290)
202 3eqc_A Dual specificity mitoge 100.0 2.8E-39 9.6E-44 340.2 12.4 267 391-665 32-324 (360)
203 2h6d_A 5'-AMP-activated protei 100.0 4.9E-39 1.7E-43 325.2 13.6 247 391-665 10-261 (276)
204 3eb0_A Putative uncharacterize 100.0 1.5E-38 5.2E-43 337.2 17.6 271 388-671 3-329 (383)
205 3nyv_A Calmodulin-domain prote 100.0 2.5E-39 8.7E-44 354.2 11.9 250 391-665 25-281 (484)
206 1x8b_A WEE1HU, WEE1-like prote 100.0 1.1E-38 3.6E-43 324.8 15.3 244 390-665 9-279 (289)
207 1vzo_A Ribosomal protein S6 ki 100.0 3.1E-39 1E-43 338.6 11.2 254 391-666 53-322 (355)
208 2ycf_A Serine/threonine-protei 100.0 1.9E-38 6.5E-43 328.4 16.8 252 390-665 8-274 (322)
209 3qyz_A Mitogen-activated prote 100.0 1.8E-38 6.2E-43 334.3 16.7 267 391-665 26-313 (364)
210 3lm5_A Serine/threonine-protei 100.0 7.3E-39 2.5E-43 332.1 13.4 255 388-665 24-287 (327)
211 3an0_A Dual specificity mitoge 100.0 1.1E-38 3.8E-43 332.9 14.7 251 390-665 49-310 (340)
212 2y4i_B KSR2, HKSR2, kinase sup 100.0 6.2E-39 2.1E-43 331.7 12.6 262 388-674 29-304 (319)
213 3cek_A Dual specificity protei 100.0 1.9E-38 6.5E-43 327.1 16.1 254 389-666 25-293 (313)
214 3pfq_A PKC-B, PKC-beta, protei 100.0 1.1E-38 3.9E-43 360.2 15.6 249 390-665 339-597 (674)
215 2j0j_A Focal adhesion kinase 1 100.0 7.5E-39 2.6E-43 360.5 14.0 259 391-674 389-653 (656)
216 2r3i_A Cell division protein k 100.0 1.4E-38 5E-43 325.7 14.8 267 392-665 3-283 (299)
217 2wtk_C Serine/threonine-protei 100.0 2E-38 6.9E-43 325.6 15.9 251 391-666 4-264 (305)
218 1phk_A Phosphorylase kinase; g 100.0 1.8E-38 6.2E-43 324.8 15.0 253 389-665 14-283 (298)
219 2fst_X Mitogen-activated prote 100.0 6.6E-39 2.3E-43 337.0 11.7 262 391-665 28-311 (367)
220 2w5a_A Serine/threonine-protei 100.0 7.2E-39 2.5E-43 324.5 11.6 252 391-667 5-269 (279)
221 3kvw_A DYRK2, dual specificity 100.0 2.2E-38 7.5E-43 340.3 15.8 197 391-597 96-302 (429)
222 2x7f_A TRAF2 and NCK-interacti 100.0 1.3E-38 4.3E-43 330.4 12.5 256 385-665 17-286 (326)
223 1wak_A Serine/threonine-protei 100.0 2.8E-38 9.7E-43 337.2 15.3 265 391-665 36-391 (397)
224 3rgf_A Cyclin-dependent kinase 100.0 2.7E-38 9.3E-43 337.8 14.5 200 392-597 20-239 (405)
225 4e7w_A Glycogen synthase kinas 100.0 3.2E-38 1.1E-42 335.4 14.8 263 391-665 39-321 (394)
226 2i6l_A Mitogen-activated prote 100.0 6.9E-38 2.4E-42 323.9 16.9 268 391-665 10-305 (320)
227 2b9h_A MAP kinase FUS3, mitoge 100.0 6.4E-38 2.2E-42 328.9 16.6 267 391-665 10-305 (353)
228 1blx_A Cyclin-dependent kinase 100.0 9.3E-38 3.2E-42 323.9 17.3 268 389-665 8-296 (326)
229 4exu_A Mitogen-activated prote 100.0 3.6E-38 1.2E-42 332.7 14.4 261 391-665 41-323 (371)
230 1zy4_A Serine/threonine-protei 100.0 6.7E-38 2.3E-42 321.2 15.8 252 391-665 5-283 (303)
231 1j1b_A Glycogen synthase kinas 100.0 7.3E-38 2.5E-42 335.4 16.6 261 392-665 54-336 (420)
232 2id5_A Lingo-1, leucine rich r 100.0 1.8E-37 6.1E-42 339.3 19.8 303 1-320 36-340 (477)
233 3aln_A Dual specificity mitoge 100.0 7.6E-38 2.6E-42 324.7 15.7 253 391-665 21-285 (327)
234 2wei_A Calmodulin-domain prote 100.0 4.6E-38 1.6E-42 320.0 13.4 253 388-665 18-276 (287)
235 2rio_A Serine/threonine-protei 100.0 1.2E-37 4.2E-42 335.1 15.4 251 392-665 15-295 (434)
236 3e3p_A Protein kinase, putativ 100.0 3.2E-37 1.1E-41 324.5 18.3 274 385-665 16-314 (360)
237 1z57_A Dual specificity protei 100.0 4.3E-37 1.5E-41 320.6 18.4 264 391-665 13-328 (339)
238 3a99_A Proto-oncogene serine/t 100.0 3.6E-38 1.2E-42 325.9 8.8 245 386-665 37-293 (320)
239 3p23_A Serine/threonine-protei 100.0 1.2E-37 4.1E-42 334.2 13.2 250 391-665 23-283 (432)
240 2vx3_A Dual specificity tyrosi 100.0 3.8E-37 1.3E-41 326.3 16.6 200 390-597 52-261 (382)
241 3fhr_A MAP kinase-activated pr 100.0 4.1E-37 1.4E-41 320.0 16.3 252 390-665 26-287 (336)
242 2dyl_A Dual specificity mitoge 100.0 3.1E-37 1.1E-41 318.7 14.7 251 391-665 24-283 (318)
243 3coi_A Mitogen-activated prote 100.0 1.8E-37 6.1E-42 325.4 13.0 262 391-665 23-305 (353)
244 3v47_A TOLL-like receptor 5B a 100.0 7.6E-37 2.6E-41 332.3 17.4 302 1-318 34-413 (455)
245 1q8y_A SR protein kinase; tran 100.0 2.3E-37 7.9E-42 327.3 13.0 265 391-665 18-333 (373)
246 2iwi_A Serine/threonine-protei 100.0 8E-38 2.7E-42 322.3 9.0 244 387-665 26-283 (312)
247 2eu9_A Dual specificity protei 100.0 1.3E-36 4.4E-41 319.2 17.6 264 391-665 18-333 (355)
248 2id5_A Lingo-1, leucine rich r 100.0 2.5E-36 8.4E-41 330.3 19.2 302 1-319 60-362 (477)
249 3qa8_A MGC80376 protein; kinas 100.0 1.7E-36 5.8E-41 334.9 16.8 264 390-663 12-295 (676)
250 3uqc_A Probable conserved tran 100.0 4.9E-36 1.7E-40 304.1 17.7 233 391-673 30-266 (286)
251 3rgz_A Protein brassinosteroid 100.0 1.8E-35 6.1E-40 341.5 21.8 231 2-239 323-558 (768)
252 2pzi_A Probable serine/threoni 100.0 5.8E-36 2E-40 340.5 15.8 242 391-673 79-329 (681)
253 3m2w_A MAP kinase-activated pr 100.0 2.6E-35 8.9E-40 301.4 18.3 230 391-665 16-256 (299)
254 3t6q_A CD180 antigen; protein- 100.0 6.8E-35 2.3E-39 328.8 23.2 300 2-319 259-566 (606)
255 3v47_A TOLL-like receptor 5B a 100.0 5.1E-35 1.8E-39 317.9 19.0 283 1-297 58-415 (455)
256 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-34 5.9E-39 325.5 22.5 190 120-320 372-565 (606)
257 3dzo_A Rhoptry kinase domain; 100.0 4.9E-36 1.7E-40 320.5 9.3 241 391-666 77-364 (413)
258 3j0a_A TOLL-like receptor 5; m 100.0 1E-34 3.5E-39 338.7 20.4 314 2-320 78-567 (844)
259 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-34 9.7E-39 317.5 21.6 303 2-318 26-486 (520)
260 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.9E-34 2.4E-38 317.2 23.0 305 2-319 57-516 (562)
261 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-33 5.2E-38 322.1 24.5 308 2-320 253-630 (680)
262 2vuw_A Serine/threonine-protei 100.0 3.5E-35 1.2E-39 305.8 7.0 243 391-664 19-329 (336)
263 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-33 4.8E-38 314.2 19.6 309 2-317 31-514 (549)
264 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-33 8.8E-38 317.7 22.1 303 1-320 56-587 (635)
265 4eco_A Uncharacterized protein 100.0 8.3E-34 2.8E-38 320.2 17.5 303 2-313 86-501 (636)
266 1ogq_A PGIP-2, polygalacturona 100.0 7.6E-34 2.6E-38 292.0 15.1 258 45-319 50-310 (313)
267 3t6q_A CD180 antigen; protein- 100.0 1.7E-33 5.9E-38 317.3 19.3 299 1-318 282-591 (606)
268 3o6n_A APL1; leucine-rich repe 100.0 2.9E-33 1E-37 297.5 19.9 291 2-321 50-360 (390)
269 4eco_A Uncharacterized protein 100.0 2.2E-33 7.4E-38 316.8 19.6 291 1-312 253-578 (636)
270 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-33 7.7E-38 288.5 17.8 255 21-294 50-308 (313)
271 3oja_B Anopheles plasmodium-re 100.0 8.1E-33 2.8E-37 310.3 19.5 290 2-320 56-365 (597)
272 2z63_A TOLL-like receptor 4, v 100.0 1.4E-32 4.7E-37 307.7 20.8 143 168-320 392-538 (570)
273 4ecn_A Leucine-rich repeat pro 100.0 2.3E-32 7.8E-37 313.7 21.7 301 2-313 328-741 (876)
274 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-32 1.9E-36 309.1 24.9 288 16-319 324-656 (680)
275 2ft3_A Biglycan; proteoglycan, 100.0 6.1E-32 2.1E-36 280.7 22.8 282 2-311 38-331 (332)
276 1xku_A Decorin; proteoglycan, 100.0 8.8E-32 3E-36 279.3 23.9 282 2-310 36-329 (330)
277 1xku_A Decorin; proteoglycan, 100.0 6.2E-32 2.1E-36 280.5 22.5 271 1-288 56-330 (330)
278 2ft3_A Biglycan; proteoglycan, 100.0 7.3E-32 2.5E-36 280.1 21.7 266 22-315 34-309 (332)
279 2z7x_B TOLL-like receptor 1, v 100.0 9.2E-32 3.2E-36 297.4 20.8 285 1-312 4-433 (520)
280 3vq2_A TLR4, TOLL-like recepto 100.0 7.5E-32 2.6E-36 303.9 19.7 138 1-145 36-174 (606)
281 4fmz_A Internalin; leucine ric 100.0 6.8E-31 2.3E-35 274.7 25.5 277 2-312 49-345 (347)
282 4ecn_A Leucine-rich repeat pro 100.0 7.9E-32 2.7E-36 309.2 19.9 289 2-312 496-818 (876)
283 3o6n_A APL1; leucine-rich repe 100.0 1.7E-31 5.8E-36 283.9 20.6 270 19-313 43-331 (390)
284 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-31 9.9E-36 309.5 22.3 296 1-312 28-374 (844)
285 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-31 6.1E-36 297.7 18.5 286 1-298 80-518 (562)
286 2z66_A Variable lymphocyte rec 100.0 6.8E-32 2.3E-36 277.0 13.3 274 24-318 10-292 (306)
287 2z80_A TOLL-like receptor 2, v 100.0 1E-31 3.4E-36 281.6 13.9 272 3-294 37-318 (353)
288 4g8a_A TOLL-like receptor 4; l 100.0 5.6E-31 1.9E-35 298.5 20.5 304 1-320 80-613 (635)
289 3oja_B Anopheles plasmodium-re 100.0 9.8E-31 3.4E-35 293.4 20.7 272 19-314 49-338 (597)
290 2z63_A TOLL-like receptor 4, v 100.0 1.2E-30 4.2E-35 291.8 21.3 305 2-315 33-411 (570)
291 4fmz_A Internalin; leucine ric 100.0 4.9E-30 1.7E-34 268.2 24.0 272 17-313 40-324 (347)
292 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-30 5.2E-35 264.0 18.7 209 101-319 57-267 (285)
293 3zyj_A Leucine-rich repeat-con 100.0 1.8E-30 6.1E-35 280.4 19.8 260 21-302 43-304 (440)
294 2z80_A TOLL-like receptor 2, v 100.0 1E-30 3.4E-35 274.0 17.4 282 19-317 29-318 (353)
295 1o6v_A Internalin A; bacterial 100.0 5.8E-30 2E-34 278.5 23.9 287 2-314 73-389 (466)
296 3zyi_A Leucine-rich repeat-con 100.0 1.2E-30 4.1E-35 282.8 18.2 259 21-301 54-314 (452)
297 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-30 4.2E-35 290.5 17.5 198 3-210 11-210 (549)
298 1o6v_A Internalin A; bacterial 100.0 1.8E-29 6.2E-34 274.6 24.2 276 2-314 51-345 (466)
299 3zyj_A Leucine-rich repeat-con 100.0 5.2E-30 1.8E-34 276.8 19.6 254 46-320 44-299 (440)
300 3zyi_A Leucine-rich repeat-con 100.0 8.4E-30 2.9E-34 276.1 19.8 254 46-320 55-310 (452)
301 3bz5_A Internalin-J, INLJ; leu 100.0 3.8E-29 1.3E-33 270.2 23.8 280 1-313 46-352 (457)
302 3o53_A Protein LRIM1, AGAP0063 100.0 4.8E-31 1.6E-35 271.8 6.6 262 2-293 15-279 (317)
303 3oja_A Leucine-rich immune mol 100.0 4.6E-31 1.6E-35 287.7 5.6 244 12-285 21-270 (487)
304 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-29 7.3E-34 255.6 16.8 252 24-296 14-267 (285)
305 2z66_A Variable lymphocyte rec 100.0 4.2E-29 1.4E-33 256.2 17.7 251 47-318 9-266 (306)
306 3oja_A Leucine-rich immune mol 100.0 6.5E-30 2.2E-34 278.6 9.4 247 42-318 31-287 (487)
307 4fcg_A Uncharacterized protein 100.0 4.4E-28 1.5E-32 250.5 19.4 234 20-290 80-314 (328)
308 4fcg_A Uncharacterized protein 100.0 6.9E-28 2.4E-32 249.1 18.8 230 1-267 85-315 (328)
309 3bz5_A Internalin-J, INLJ; leu 100.0 2E-27 6.7E-32 256.7 22.7 262 8-311 29-297 (457)
310 3o53_A Protein LRIM1, AGAP0063 100.0 2.6E-29 8.9E-34 258.9 6.3 260 21-310 10-272 (317)
311 1wwl_A Monocyte differentiatio 100.0 8.4E-30 2.9E-34 261.9 1.5 197 101-312 96-308 (312)
312 1wwl_A Monocyte differentiatio 100.0 6.6E-29 2.3E-33 255.2 7.9 255 16-291 38-310 (312)
313 4azs_A Methyltransferase WBDD; 99.9 5E-29 1.7E-33 275.3 2.5 186 399-594 241-438 (569)
314 2z62_A TOLL-like receptor 4, v 99.9 2.1E-26 7.3E-31 232.3 20.0 228 25-297 11-244 (276)
315 2o6q_A Variable lymphocyte rec 99.9 2.7E-26 9.2E-31 230.6 20.1 207 75-296 17-224 (270)
316 3g06_A SSPH2 (leucine-rich rep 99.9 6.7E-26 2.3E-30 251.9 24.5 254 1-313 44-297 (622)
317 1jl5_A Outer protein YOPM; leu 99.9 3.3E-26 1.1E-30 246.9 20.8 247 21-314 131-410 (454)
318 1jl5_A Outer protein YOPM; leu 99.9 1.2E-26 4.2E-31 250.2 16.6 263 1-313 15-290 (454)
319 2z62_A TOLL-like receptor 4, v 99.9 7.2E-26 2.5E-30 228.4 19.3 220 5-268 15-239 (276)
320 1p9a_G Platelet glycoprotein I 99.9 5E-26 1.7E-30 230.7 17.6 206 71-295 7-213 (290)
321 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-28 6.3E-33 266.7 -1.4 304 2-311 33-381 (461)
322 1z7x_W Ribonuclease inhibitor; 99.9 4.2E-28 1.4E-32 263.8 -1.5 301 1-313 60-411 (461)
323 3g06_A SSPH2 (leucine-rich rep 99.9 4.6E-25 1.6E-29 245.2 22.2 238 1-295 65-302 (622)
324 3rfs_A Internalin B, repeat mo 99.9 1.4E-25 4.7E-30 225.6 15.7 228 21-278 19-247 (272)
325 1p9a_G Platelet glycoprotein I 99.9 6.2E-25 2.1E-29 222.6 19.8 202 17-231 6-207 (290)
326 2o6q_A Variable lymphocyte rec 99.9 1E-24 3.5E-29 219.1 20.8 203 21-233 16-219 (270)
327 3rfs_A Internalin B, repeat mo 99.9 1E-25 3.6E-30 226.5 12.5 222 45-296 19-241 (272)
328 3goz_A Leucine-rich repeat-con 99.9 1.5E-26 5.3E-31 242.8 4.3 265 2-270 3-301 (362)
329 3goz_A Leucine-rich repeat-con 99.9 1.2E-25 4.1E-30 236.0 6.9 260 25-292 2-299 (362)
330 2xwt_C Thyrotropin receptor; s 99.9 1.4E-24 4.8E-29 213.9 14.1 195 22-263 32-236 (239)
331 2ca6_A RAN GTPase-activating p 99.9 6.2E-26 2.1E-30 240.6 2.0 256 12-293 23-319 (386)
332 3en9_A Glycoprotease, O-sialog 99.9 1.9E-25 6.6E-30 245.3 5.7 185 395-594 339-538 (540)
333 3m19_A Variable lymphocyte rec 99.9 3.6E-23 1.2E-27 205.3 19.7 143 101-243 36-179 (251)
334 2xwt_C Thyrotropin receptor; s 99.9 6.2E-24 2.1E-28 209.3 13.9 197 75-288 32-237 (239)
335 2ca6_A RAN GTPase-activating p 99.9 1.6E-25 5.3E-30 237.5 2.0 261 1-285 36-338 (386)
336 1h6u_A Internalin H; cell adhe 99.9 1.8E-23 6.2E-28 214.0 17.3 205 4-232 26-230 (308)
337 3m19_A Variable lymphocyte rec 99.9 3E-23 1E-27 205.9 17.5 182 101-295 15-197 (251)
338 1h6u_A Internalin H; cell adhe 99.9 3.2E-23 1.1E-27 212.2 16.7 214 22-293 20-233 (308)
339 4glp_A Monocyte differentiatio 99.9 2.1E-23 7.2E-28 214.0 14.3 227 20-267 63-308 (310)
340 4glp_A Monocyte differentiatio 99.9 1.9E-23 6.7E-28 214.2 12.6 200 102-312 93-306 (310)
341 4ay9_X Follicle-stimulating ho 99.9 6.4E-23 2.2E-27 214.0 16.5 239 24-286 12-255 (350)
342 2ast_B S-phase kinase-associat 99.9 9.7E-24 3.3E-28 219.3 8.1 253 22-296 48-312 (336)
343 4ay9_X Follicle-stimulating ho 99.9 1.8E-22 6.3E-27 210.6 17.4 238 2-264 14-257 (350)
344 2ast_B S-phase kinase-associat 99.9 7.3E-24 2.5E-28 220.2 3.4 251 2-275 52-315 (336)
345 2v9t_B SLIT homolog 2 protein 99.9 2.3E-22 7.9E-27 195.0 9.5 178 127-317 14-192 (220)
346 1zar_A RIO2 kinase; serine kin 99.9 8E-23 2.7E-27 205.7 6.4 151 387-568 85-253 (282)
347 2v70_A SLIT-2, SLIT homolog 2 99.9 4.5E-22 1.5E-26 192.9 9.4 178 127-317 14-193 (220)
348 2o6s_A Variable lymphocyte rec 99.9 2.6E-21 8.7E-26 186.2 12.5 129 102-230 30-159 (208)
349 1h6t_A Internalin B; cell adhe 99.8 8.4E-21 2.9E-25 192.4 15.7 189 23-233 26-214 (291)
350 3cvr_A Invasion plasmid antige 99.8 5.9E-21 2E-25 209.5 15.6 189 46-278 60-255 (571)
351 3cvr_A Invasion plasmid antige 99.8 1.5E-20 5E-25 206.4 17.7 185 22-240 60-251 (571)
352 2xot_A Amphoterin-induced prot 99.8 5.2E-21 1.8E-25 200.4 13.2 163 126-295 41-207 (361)
353 1h6t_A Internalin B; cell adhe 99.8 2.7E-20 9.4E-25 188.6 16.3 170 101-293 47-216 (291)
354 2o6s_A Variable lymphocyte rec 99.8 2.5E-20 8.6E-25 179.2 14.7 180 24-243 10-189 (208)
355 1m9s_A Internalin B; cell inva 99.8 4.7E-21 1.6E-25 212.7 10.2 193 22-236 22-214 (605)
356 1m9s_A Internalin B; cell inva 99.8 2.1E-20 7.1E-25 207.6 15.2 189 2-213 26-214 (605)
357 2xot_A Amphoterin-induced prot 99.8 1.8E-20 6.3E-25 196.2 11.7 156 101-266 40-202 (361)
358 3e6j_A Variable lymphocyte rec 99.8 8.5E-20 2.9E-24 178.1 14.3 136 148-294 40-176 (229)
359 3ogk_B Coronatine-insensitive 99.8 4E-22 1.4E-26 223.8 -3.1 133 171-312 377-525 (592)
360 3e6j_A Variable lymphocyte rec 99.8 4.4E-19 1.5E-23 173.0 18.7 155 102-269 21-175 (229)
361 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-19 5.5E-24 174.9 15.2 114 120-233 53-167 (220)
362 2v9t_B SLIT homolog 2 protein 99.8 2E-19 6.7E-24 174.3 14.2 132 101-232 33-165 (220)
363 1dce_A Protein (RAB geranylger 99.8 5.2E-22 1.8E-26 219.1 -8.4 122 149-284 442-567 (567)
364 3ogk_B Coronatine-insensitive 99.8 2.5E-20 8.7E-25 209.1 4.3 279 2-292 197-528 (592)
365 1xeu_A Internalin C; cellular 99.8 4.3E-19 1.5E-23 176.9 11.9 172 20-213 18-189 (263)
366 1dce_A Protein (RAB geranylger 99.8 7.4E-22 2.5E-26 217.9 -9.2 206 18-260 346-567 (567)
367 4ezg_A Putative uncharacterize 99.8 7.8E-19 2.7E-23 167.1 12.8 127 101-232 45-172 (197)
368 1xeu_A Internalin C; cellular 99.8 2.1E-19 7.2E-24 179.1 9.2 169 101-293 20-188 (263)
369 1w8a_A SLIT protein; signaling 99.8 2.4E-19 8.3E-24 169.7 8.1 129 127-268 11-141 (192)
370 4ezg_A Putative uncharacterize 99.8 1.4E-18 4.7E-23 165.4 12.4 154 42-210 41-195 (197)
371 2wfh_A SLIT homolog 2 protein 99.8 8.9E-19 3E-23 165.8 9.0 154 151-318 13-167 (193)
372 2p1m_B Transport inhibitor res 99.8 4.4E-20 1.5E-24 207.2 -0.7 307 2-311 110-517 (594)
373 3sb4_A Hypothetical leucine ri 99.8 1.7E-19 5.8E-24 186.4 3.1 239 20-283 24-327 (329)
374 2p1m_B Transport inhibitor res 99.7 2.3E-19 8E-24 201.3 2.2 133 147-290 371-519 (594)
375 4b8c_D Glucose-repressible alc 99.7 2E-18 7E-23 196.4 8.6 133 101-237 225-359 (727)
376 1w8a_A SLIT protein; signaling 99.7 1.3E-17 4.4E-22 157.8 12.5 127 103-232 11-139 (192)
377 1zth_A RIO1 serine protein kin 99.7 9E-19 3.1E-23 174.0 4.8 137 394-542 49-219 (258)
378 4b8c_D Glucose-repressible alc 99.7 4.9E-18 1.7E-22 193.3 8.4 192 20-229 172-369 (727)
379 4fdw_A Leucine rich hypothetic 99.7 1.3E-16 4.3E-21 168.5 17.9 239 22-288 136-381 (401)
380 3sb4_A Hypothetical leucine ri 99.7 2E-17 6.9E-22 170.8 10.4 220 20-260 48-328 (329)
381 2ell_A Acidic leucine-rich nuc 99.7 7.3E-17 2.5E-21 149.2 10.8 107 124-232 24-133 (168)
382 2ell_A Acidic leucine-rich nuc 99.7 4.5E-17 1.5E-21 150.6 9.3 130 101-232 25-160 (168)
383 2je0_A Acidic leucine-rich nuc 99.7 1.2E-16 4.2E-21 144.4 10.1 111 123-235 16-129 (149)
384 2wfh_A SLIT homolog 2 protein 99.7 8.8E-17 3E-21 152.0 9.0 133 175-320 13-146 (193)
385 4fdw_A Leucine rich hypothetic 99.7 1.2E-15 4.1E-20 160.9 18.2 242 20-291 112-359 (401)
386 2o6r_A Variable lymphocyte rec 99.7 2.9E-16 1E-20 146.4 11.4 132 127-294 10-141 (177)
387 2je0_A Acidic leucine-rich nuc 99.7 1.1E-16 3.8E-21 144.7 7.4 126 101-228 18-149 (149)
388 4gyi_A RIO2 kinase; protein ki 99.6 9.8E-17 3.3E-21 165.2 6.0 138 393-542 96-265 (397)
389 1ds9_A Outer arm dynein; leuci 99.6 9.7E-18 3.3E-22 159.6 -2.1 152 123-290 17-185 (198)
390 2o6r_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 139.3 13.5 108 125-232 29-137 (177)
391 1a9n_A U2A', U2A'; complex (nu 99.6 9.7E-16 3.3E-20 142.7 8.9 135 70-211 15-155 (176)
392 1a9n_A U2A', U2A'; complex (nu 99.6 1.1E-15 3.7E-20 142.4 8.3 110 119-232 14-126 (176)
393 1ds9_A Outer arm dynein; leuci 99.6 3.9E-17 1.3E-21 155.4 -2.9 144 117-267 41-186 (198)
394 3g39_A Variable lymphocyte rec 99.5 3E-14 1E-18 131.6 8.5 110 150-295 11-120 (170)
395 2r9u_A Variable lymphocyte rec 99.5 2E-13 7E-18 126.4 10.6 84 125-208 34-117 (174)
396 3g39_A Variable lymphocyte rec 99.5 2.2E-13 7.5E-18 125.8 10.7 84 124-207 30-113 (170)
397 2r9u_A Variable lymphocyte rec 99.4 2.5E-13 8.5E-18 125.8 10.5 103 127-232 15-118 (174)
398 3un9_A NLR family member X1; l 99.4 8E-15 2.7E-19 153.1 -3.2 146 124-275 101-261 (372)
399 3un9_A NLR family member X1; l 99.4 2E-14 6.9E-19 150.1 -1.2 159 123-291 71-253 (372)
400 2ifg_A High affinity nerve gro 99.4 3.1E-13 1.1E-17 140.5 7.0 80 153-234 13-95 (347)
401 4fs7_A Uncharacterized protein 99.3 6.3E-12 2.2E-16 132.9 14.5 155 12-180 62-216 (394)
402 4fs7_A Uncharacterized protein 99.3 8.5E-12 2.9E-16 131.9 14.8 256 8-287 81-353 (394)
403 4gt6_A Cell surface protein; l 99.3 2.7E-11 9.1E-16 128.1 17.8 251 14-289 56-369 (394)
404 2ifg_A High affinity nerve gro 99.3 6.4E-12 2.2E-16 130.5 11.8 102 128-232 12-116 (347)
405 3tm0_A Aminoglycoside 3'-phosp 99.3 1.2E-11 4.1E-16 123.0 11.2 146 388-540 10-212 (263)
406 4gt6_A Cell surface protein; l 99.2 2.2E-10 7.7E-15 121.0 17.2 139 32-182 50-192 (394)
407 1nd4_A Aminoglycoside 3'-phosp 99.1 1.9E-10 6.4E-15 114.1 10.2 136 393-540 21-213 (264)
408 4h09_A Hypothetical leucine ri 99.1 3.8E-09 1.3E-13 110.9 19.1 57 18-82 43-99 (379)
409 2ra8_A Uncharacterized protein 99.0 7E-11 2.4E-15 122.2 4.2 86 194-288 250-341 (362)
410 2ra8_A Uncharacterized protein 99.0 3E-10 1E-14 117.5 8.3 161 120-291 135-321 (362)
411 3dxp_A Putative acyl-COA dehyd 98.9 1.9E-09 6.6E-14 112.2 9.4 143 395-541 41-248 (359)
412 4h09_A Hypothetical leucine ri 98.9 3.7E-08 1.3E-12 103.3 19.2 249 9-285 57-341 (379)
413 3sg8_A APH(2'')-ID; antibiotic 98.7 1.9E-09 6.4E-14 109.5 2.1 187 397-595 25-288 (304)
414 1io0_A Tropomodulin; LRR prote 98.7 3.2E-09 1.1E-13 99.0 1.9 122 39-161 30-164 (185)
415 1io0_A Tropomodulin; LRR prote 98.7 4.2E-09 1.4E-13 98.2 1.7 117 69-185 31-164 (185)
416 3r70_A Aminoglycoside phosphot 98.5 4.4E-07 1.5E-11 92.6 10.2 136 393-541 38-237 (320)
417 3rw6_A Nuclear RNA export fact 98.5 3.2E-08 1.1E-12 96.9 1.6 87 120-209 137-233 (267)
418 3rw6_A Nuclear RNA export fact 98.4 4.2E-08 1.4E-12 96.1 1.9 80 194-283 168-257 (267)
419 3d1u_A Putative fructosamine-3 98.3 2.5E-06 8.5E-11 85.2 11.0 76 396-475 19-97 (288)
420 4gkh_A Aminoglycoside 3'-phosp 98.3 2.8E-06 9.7E-11 84.2 11.3 134 399-540 31-222 (272)
421 3tdw_A Gentamicin resistance p 98.3 2.6E-06 8.9E-11 86.1 10.5 136 397-541 24-224 (306)
422 3ats_A Putative uncharacterize 98.1 3.9E-06 1.3E-10 86.9 8.2 80 397-476 25-121 (357)
423 3ovc_A Hygromycin-B 4-O-kinase 98.1 9.1E-06 3.1E-10 84.1 9.3 77 394-476 43-122 (362)
424 1pgv_A TMD-1, tropomodulin TMD 98.0 1.2E-06 4E-11 81.1 1.7 119 20-161 40-170 (197)
425 3e4g_A ATP synthase subunit S, 98.0 2.6E-06 8.8E-11 77.2 3.5 85 45-135 61-150 (176)
426 3rfe_A Platelet glycoprotein I 98.0 3.8E-06 1.3E-10 72.7 4.4 65 254-318 32-98 (130)
427 3e4g_A ATP synthase subunit S, 97.9 1.5E-06 5.3E-11 78.7 0.8 13 217-229 137-149 (176)
428 1pgv_A TMD-1, tropomodulin TMD 97.9 3.9E-06 1.3E-10 77.5 2.2 125 38-185 34-170 (197)
429 2olc_A MTR kinase, methylthior 97.8 7.5E-05 2.6E-09 78.4 11.4 75 397-473 35-120 (397)
430 2q83_A YTAA protein; 2635576, 97.7 6.4E-05 2.2E-09 77.1 9.0 138 398-540 38-251 (346)
431 3jr1_A Putative fructosamine-3 97.6 0.00029 9.9E-09 70.8 10.6 136 396-536 40-231 (312)
432 3f7w_A Putative fructosamine-3 97.5 0.00026 9E-09 70.6 9.9 78 393-474 16-96 (288)
433 2pyw_A Uncharacterized protein 97.3 0.0008 2.8E-08 71.0 10.4 80 510-591 231-313 (420)
434 2ppq_A HSK, HK, homoserine kin 97.0 0.0012 4E-08 67.0 8.3 155 383-540 8-216 (322)
435 3dxq_A Choline/ethanolamine ki 97.0 0.0021 7E-08 64.5 9.7 71 397-475 23-95 (301)
436 2yle_A Protein spire homolog 1 96.9 0.007 2.4E-07 56.1 11.3 103 474-594 34-136 (229)
437 3csv_A Aminoglycoside phosphot 96.9 0.0054 1.9E-07 62.3 12.0 139 398-541 24-217 (333)
438 3feg_A Choline/ethanolamine ki 96.8 0.0031 1.1E-07 65.1 9.0 139 397-540 55-253 (379)
439 1nw1_A Choline kinase (49.2 KD 96.7 0.0013 4.6E-08 69.4 6.0 72 397-474 78-158 (429)
440 3rfe_A Platelet glycoprotein I 96.7 0.0021 7.3E-08 55.2 6.1 35 174-208 33-67 (130)
441 2qg7_A Ethanolamine kinase PV0 96.7 0.0034 1.2E-07 66.6 8.9 74 397-475 113-188 (458)
442 1zyl_A Hypothetical protein YI 96.6 0.012 4.3E-07 59.4 11.7 139 398-540 32-222 (328)
443 3c5i_A Choline kinase; choline 96.4 0.0032 1.1E-07 65.1 6.1 73 397-474 38-120 (369)
444 3i1a_A Spectinomycin phosphotr 96.1 0.051 1.7E-06 55.2 12.9 67 402-475 33-108 (339)
445 3f2s_A CK, chetk-alpha, cholin 95.6 0.022 7.7E-07 58.9 7.9 140 397-540 57-279 (401)
446 3mes_A Choline kinase; malaria 94.8 0.044 1.5E-06 57.3 7.1 74 397-475 75-157 (424)
447 3g15_A CK, chetk-alpha, cholin 91.9 0.11 3.8E-06 54.0 4.4 29 512-540 245-279 (401)
448 4ann_A ESSB; membrane protein, 84.0 2.2 7.7E-05 39.3 7.0 122 446-602 43-165 (215)
449 2ks1_B Epidermal growth factor 78.8 0.98 3.3E-05 29.8 1.8 18 335-352 11-28 (44)
450 3cxl_A N-chimerin; SH2, RHO-GA 75.7 0.39 1.3E-05 50.8 -1.2 60 395-457 145-213 (463)
451 4ano_A ESSB; membrane protein, 74.3 8.9 0.00031 35.4 7.7 114 446-596 48-164 (219)
452 2lz0_A Uncharacterized protein 72.7 6.1 0.00021 31.5 5.5 46 112-158 8-53 (100)
453 2l2t_A Receptor tyrosine-prote 70.6 1.2 4.2E-05 29.2 0.7 16 335-350 10-25 (44)
454 2lz0_A Uncharacterized protein 61.1 15 0.00051 29.2 5.6 49 133-182 5-53 (100)
455 2knc_A Integrin alpha-IIB; tra 30.4 20 0.0007 24.6 1.4 6 361-366 39-44 (54)
456 3ls8_A Phosphatidylinositol 3- 30.0 2.6E+02 0.009 30.0 10.6 81 452-540 403-501 (614)
457 2l6w_A Beta-type platelet-deri 23.4 25 0.00087 22.1 0.0 19 347-365 19-37 (39)
No 1
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=7.2e-55 Score=441.26 Aligned_cols=260 Identities=28% Similarity=0.474 Sum_probs=216.0
Q ss_pred hcCCCCCccccCCCceeEEEEEeC------CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG------DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
.++|.+.+.||+|+||+||+|++. +++.||||+++.......++|.+|++++++++|||||+++|+|.+++..+
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence 356888899999999999999753 47889999997665566788999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhCC------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEE
Q 005760 465 LVLEYMPHGSLEKYLHSSN------------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAH 532 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~k 532 (678)
+||||+++|+|.++++..+ ..+++.++..++.|||.||+||| +++|+||||||+|||++.++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEE
T ss_pred EEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEE
Confidence 9999999999999997642 36899999999999999999999 89999999999999999999999
Q ss_pred EEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcc
Q 005760 533 LSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDW 611 (678)
Q Consensus 533 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~ 611 (678)
|+|||+|+...............||+.|||||++.++.|+.++|||||||++|||+| |+.||.+....+ +...+...
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~--~~~~i~~~ 246 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE--VIECITQG 246 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHHHHHT
T ss_pred ECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH--HHHHHHcC
Confidence 999999987654444434445579999999999999999999999999999999999 899997643221 11111110
Q ss_pred cCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 612 LPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
. ... .+..+++++.+|+.+||+.||++||||+|+++.|+++.+.
T Consensus 247 ~-----------~~~-------~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 247 R-----------VLQ-------RPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp C-----------CCC-------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred C-----------CCC-------CCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 0 000 0123566799999999999999999999999999998754
No 2
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1e-53 Score=432.67 Aligned_cols=264 Identities=27% Similarity=0.449 Sum_probs=208.4
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
..+++.+.+.||+|+||+||+|++++ .||||+++... .+..+.|.+|++++++++|||||+++|++.+ +..++||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred cHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence 34678889999999999999998753 59999986432 2345789999999999999999999998865 5689999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+++|+|.++++.....+++..+..|+.|||.||+||| +++||||||||+|||+++++.+||+|||+|+.......
T Consensus 111 Ey~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~ 187 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp ECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred EcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence 999999999999877777999999999999999999999 89999999999999999999999999999987654333
Q ss_pred cceeecccCCccccCccccCC---CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 548 STIQTQTLATIGYMAPEYGKE---GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~---~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
........||+.|||||++.+ +.|+.++|||||||++|||+||+.||.+....... ...+... ...|..
T Consensus 188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~-~~~~~~~-------~~~p~~ 259 (307)
T 3omv_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI-IFMVGRG-------YASPDL 259 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH-HHHHHTT-------CCCCCS
T ss_pred ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHH-HHHHhcC-------CCCCCc
Confidence 334456689999999998853 45899999999999999999999999764332211 1111110 011111
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
.. .+..+++++.+++.+||+.||++||||.|+++.|+.++.++
T Consensus 260 ~~-------~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 260 SK-------LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp TT-------SCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred cc-------ccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence 00 01235677999999999999999999999999999887553
No 3
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=5e-54 Score=441.24 Aligned_cols=258 Identities=28% Similarity=0.466 Sum_probs=207.3
Q ss_pred cCCCCCccccCCCceeEEEEEeC------CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLG------DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
++|.+.+.||+|+||+||+|++. +++.||||+++.......++|.+|++++++++|||||+++|+|.+.+..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 45677789999999999999853 578899999976655567889999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCC--------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcE
Q 005760 466 VLEYMPHGSLEKYLHSSN--------------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVA 531 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~ 531 (678)
||||+++|+|.++++... ..+++.++..|+.|||.||+||| +++|+||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcE
Confidence 999999999999997642 25899999999999999999999 8999999999999999999999
Q ss_pred EEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhc
Q 005760 532 HLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVND 610 (678)
Q Consensus 532 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~ 610 (678)
||+|||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||.+....+ ....+..
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~--~~~~i~~ 275 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE--AIDCITQ 275 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH--HHHHHHH
T ss_pred EEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH--HHHHHHc
Confidence 9999999987655444444556789999999999999999999999999999999999 899997643221 1111111
Q ss_pred ccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHH
Q 005760 611 WLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRD 672 (678)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~ 672 (678)
-. ... .+..+++++.+|+.+||+.||++||||+||++.|+++.+
T Consensus 276 g~-----~~~-------------~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 276 GR-----ELE-------------RPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp TC-----CCC-------------CCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred CC-----CCC-------------CcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence 00 000 112356779999999999999999999999999999865
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=7.3e-54 Score=435.80 Aligned_cols=256 Identities=25% Similarity=0.452 Sum_probs=211.6
Q ss_pred cCCCCCccccCCCceeEEEEEe------CCCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARL------GDGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
+++++.+.||+|+||+||+|.+ .+++.||||+++... ....++|.+|+.++++++|||||+++|+|.+++..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence 3456678999999999999985 256889999996543 234578999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC
Q 005760 465 LVLEYMPHGSLEKYLHSSN---------------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM 529 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~ 529 (678)
+||||+++|+|.++++... ..+++..+..|+.|||.||+||| +++||||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG
T ss_pred EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCC
Confidence 9999999999999996532 25889999999999999999999 89999999999999999999
Q ss_pred cEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhh
Q 005760 530 VAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWV 608 (678)
Q Consensus 530 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~ 608 (678)
.+||+|||+++.....+.....+...||+.|||||++.++.|+.++|||||||++|||+| |..||.+.... .+...+
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~--~~~~~i 260 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ--DVVEMI 260 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH--HHHHHH
T ss_pred CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH--HHHHHH
Confidence 999999999987654444444556789999999999999999999999999999999999 89999764322 222222
Q ss_pred hcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHH
Q 005760 609 NDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKI 670 (678)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~ 670 (678)
.... .. ..+..|++++.++|.+||+.||++||||+||++.|+++
T Consensus 261 ~~~~-----------~~-------~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 261 RNRQ-----------VL-------PCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HTTC-----------CC-------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HcCC-----------CC-------CCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 1100 00 01124667799999999999999999999999999875
No 5
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=8.8e-52 Score=423.47 Aligned_cols=250 Identities=25% Similarity=0.321 Sum_probs=210.5
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
.+.|+..+.||+|+||.||+|..+ +|+.||||++........+.+.+|+++++.++|||||++++++.+++.+|+||||
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 152 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 152 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeC
Confidence 356899999999999999999864 7999999999876666677889999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcc
Q 005760 470 MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQST 549 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~ 549 (678)
+++|+|.+++...+ +++..+..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.+.... .
T Consensus 153 ~~gg~L~~~l~~~~--l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~ 225 (346)
T 4fih_A 153 LEGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--P 225 (346)
T ss_dssp CTTEEHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS--C
T ss_pred CCCCcHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCC--C
Confidence 99999999998653 899999999999999999999 9999999999999999999999999999998765332 2
Q ss_pred eeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCccc
Q 005760 550 IQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSRED 629 (678)
Q Consensus 550 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (678)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.... .....+....+ +...
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~--~~~~~i~~~~~--------~~~~---- 291 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL--KAMKMIRDNLP--------PRLK---- 291 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSSC--------CCCS----
T ss_pred cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHcCCC--------CCCC----
Confidence 234578999999999999999999999999999999999999999753221 11111111110 0000
Q ss_pred hhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 630 INFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 630 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....+++++.+|+.+||++||++|||++|+++
T Consensus 292 ----~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 292 ----NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp ----CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ----ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 01124566889999999999999999999975
No 6
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=3.1e-51 Score=418.29 Aligned_cols=256 Identities=23% Similarity=0.307 Sum_probs=208.9
Q ss_pred cCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEec
Q 005760 392 DGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEYM 470 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 470 (678)
+.|++.++||+|+||.||+|+. .+|+.||||+++... ...+|+.+++.++|||||++++++.+++.+|+||||+
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH-----hHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence 4577788999999999999985 479999999997532 2246999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC-cEEEEeeccccccCCCCCc-
Q 005760 471 PHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM-VAHLSDFGIAKLLTREDQS- 548 (678)
Q Consensus 471 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~-~~kl~Dfg~~~~~~~~~~~- 548 (678)
+||+|.+++++.+ .+++..+..++.||+.||+||| +++|+||||||+|||++.+| ++||+|||+|+.+......
T Consensus 133 ~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~ 208 (336)
T 4g3f_A 133 EGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGK 208 (336)
T ss_dssp TTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-------
T ss_pred CCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCccc
Confidence 9999999998765 4899999999999999999999 99999999999999999987 6999999999876543221
Q ss_pred --ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 549 --TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 549 --~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+....... ........ ...+
T Consensus 209 ~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~-~~i~~~~~--~~~~-------- 277 (336)
T 4g3f_A 209 SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLC-LKIASEPP--PIRE-------- 277 (336)
T ss_dssp -----CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCH-HHHHHSCC--GGGG--------
T ss_pred ceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHH-HHHHcCCC--Cchh--------
Confidence 1223457999999999999999999999999999999999999999765443322 11111100 0000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
.+..+++++.+++.+||++||++|||+.|+++.|.......
T Consensus 278 -------~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~ 318 (336)
T 4g3f_A 278 -------IPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEV 318 (336)
T ss_dssp -------SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred -------cCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhh
Confidence 01235567889999999999999999999999998887654
No 7
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=8.1e-52 Score=424.45 Aligned_cols=250 Identities=21% Similarity=0.364 Sum_probs=201.9
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
.++|++.+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|+++++.++|||||++++++.+++..|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 36899999999999999999985 479999999997543 234567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 468 EYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
||++||+|.+++...+ ..+++..+..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.....
T Consensus 103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~- 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST- 178 (350)
T ss_dssp ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH-
T ss_pred eCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCC-
Confidence 9999999999997554 35788999999999999999999 999999999999999999999999999999876421
Q ss_pred CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+....+. .........+ + .
T Consensus 179 -~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~-~~~i~~~~~~--------~-~-- 245 (350)
T 4b9d_A 179 -VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNL-VLKIISGSFP--------P-V-- 245 (350)
T ss_dssp -HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHTCCC--------C-C--
T ss_pred -cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH-HHHHHcCCCC--------C-C--
Confidence 1223346799999999999999999999999999999999999999976322211 1111111110 0 0
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
+..+++++.+|+.+||++||++|||++|+++
T Consensus 246 --------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 246 --------SLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp --------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --------CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0123556889999999999999999999986
No 8
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=5e-52 Score=418.90 Aligned_cols=248 Identities=25% Similarity=0.376 Sum_probs=209.2
Q ss_pred cCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecc---cCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQ---YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
++|++.+.||+|+||+||+|+. .+|+.||||++... .....+.+.+|+++++.++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5699999999999999999985 57999999999753 2344577899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||++||+|.+++.+.+ .+++..+..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.+.....
T Consensus 112 Ey~~gG~L~~~i~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~ 187 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187 (311)
T ss_dssp CCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred ecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence 9999999999998765 4899999999999999999999 99999999999999999999999999999998765444
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+....+ .......... .-|
T Consensus 188 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~-~~~~i~~~~~-------~~p----- 254 (311)
T 4aw0_A 188 QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL-IFAKIIKLEY-------DFP----- 254 (311)
T ss_dssp CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCC-------CCC-----
T ss_pred cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHcCCC-------CCC-----
Confidence 444556789999999999999999999999999999999999999997532211 1111111100 001
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIV 664 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell 664 (678)
...++++.+|+.+||++||++|||++|+.
T Consensus 255 --------~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 255 --------EKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp --------TTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred --------cccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 12345688999999999999999999864
No 9
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.3e-50 Score=425.15 Aligned_cols=250 Identities=25% Similarity=0.324 Sum_probs=210.6
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
.+.|+..+.||+|+||.||+|+. .+|+.||||++........+.+.+|+.+|+.++|||||+++++|.+.+.+|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 45799999999999999999985 47999999999876666678899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcc
Q 005760 470 MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQST 549 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~ 549 (678)
|+||+|.++++..+ +++..+..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.+.... .
T Consensus 230 ~~gG~L~~~i~~~~--l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~--~ 302 (423)
T 4fie_A 230 LEGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--P 302 (423)
T ss_dssp CTTEEHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC--C
T ss_pred CCCCcHHHHHhccC--CCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCC--c
Confidence 99999999997654 899999999999999999999 9999999999999999999999999999998765332 2
Q ss_pred eeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCccc
Q 005760 550 IQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSRED 629 (678)
Q Consensus 550 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (678)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.... .....+....+ +....
T Consensus 303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~--~~~~~i~~~~~--------~~~~~--- 369 (423)
T 4fie_A 303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL--KAMKMIRDNLP--------PRLKN--- 369 (423)
T ss_dssp CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCC--------CCCSC---
T ss_pred cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHcCCC--------CCCcc---
Confidence 234568999999999999999999999999999999999999999753221 11111111110 00000
Q ss_pred hhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 630 INFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 630 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
...+++++.+|+.+||+.||++|||+.|+++
T Consensus 370 -----~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 370 -----LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp -----TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -----cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0123456889999999999999999999976
No 10
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=1.1e-51 Score=427.24 Aligned_cols=271 Identities=23% Similarity=0.367 Sum_probs=220.2
Q ss_pred CHHHHHHhhcCCCCCccccCCCceeEEEEEeC------CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCC-ccceeee
Q 005760 383 SYLELCRATDGFSENNLIGRGSFGSVFKARLG------DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRH-RNIIKVI 454 (678)
Q Consensus 383 ~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h-~niv~~~ 454 (678)
...+.+...++|++.+.||+|+||+||+|.+. .++.||||++..... ...+.+.+|++++++++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 33445566789999999999999999999743 246799999975433 345678999999999965 8999999
Q ss_pred eeeecC-CeEEEEEEecCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCC
Q 005760 455 SSCSNE-EFKALVLEYMPHGSLEKYLHSSN---------------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDL 518 (678)
Q Consensus 455 ~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl 518 (678)
|+|.+. +.+++|||||++|+|.++++..+ ..+++..+..++.|||+||+||| +++||||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCcc
Confidence 998664 56899999999999999997532 34789999999999999999999 999999999
Q ss_pred CCCCeeecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcc
Q 005760 519 KPSNVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEI 597 (678)
Q Consensus 519 ~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~ 597 (678)
||+|||+++++.+||+|||+|+...............||+.|||||++.++.|+.++|||||||++|||+| |+.||.+.
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~ 291 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 291 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999987765544445556779999999999999999999999999999999998 89999764
Q ss_pred cCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 598 FNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
..... +...+..-.. .. .+..+++++.++|.+||+.||++||||+|+++.|+++.++..
T Consensus 292 ~~~~~-~~~~i~~g~~-----~~-------------~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~~ 350 (353)
T 4ase_A 292 KIDEE-FCRRLKEGTR-----MR-------------APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 350 (353)
T ss_dssp CCSHH-HHHHHHHTCC-----CC-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred CHHHH-HHHHHHcCCC-----CC-------------CCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHhh
Confidence 33221 1111111000 00 012345678999999999999999999999999999977644
No 11
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=3.8e-51 Score=417.05 Aligned_cols=273 Identities=23% Similarity=0.329 Sum_probs=200.9
Q ss_pred cCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCC----eEEEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE----FKALVL 467 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~----~~~lv~ 467 (678)
++|.+.+.||+|+||+||+|++ +|+.||||+++.... ....+..|+..+..++|||||++++++.+++ .+++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 4577889999999999999998 689999999965422 1122234555667889999999999997653 579999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFG-----YSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-----~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
||+++|+|.++++... +++..+.+++.|++.||+|||+. ...+|+||||||+|||++.++++||+|||+|+..
T Consensus 81 Ey~~~gsL~~~l~~~~--l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp ECCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred cCCCCCcHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccc
Confidence 9999999999998764 89999999999999999999932 1239999999999999999999999999999876
Q ss_pred CCCCCc--ceeecccCCccccCccccCCC------CCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc--
Q 005760 543 TREDQS--TIQTQTLATIGYMAPEYGKEG------RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL-- 612 (678)
Q Consensus 543 ~~~~~~--~~~~~~~~~~~y~aPE~~~~~------~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~-- 612 (678)
...... .......||+.|||||++.+. .++.++|||||||++|||+||..||..................
T Consensus 159 ~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~ 238 (303)
T 3hmm_A 159 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV 238 (303)
T ss_dssp ETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred cCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchH
Confidence 433221 123346799999999998654 4678999999999999999998877543322211111100000
Q ss_pred ----CCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 613 ----PISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 613 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
......-.+|... ......+++..+.+++.+||+.||++||||.|+++.|+++.++
T Consensus 239 ~~~~~~~~~~~~rp~~p-----~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 239 EEMRKVVCEQKLRPNIP-----NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHHTTSCCCCCCC-----GGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCCCCCC-----ccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 0000011111111 1111234667799999999999999999999999999998753
No 12
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=2e-50 Score=405.59 Aligned_cols=244 Identities=26% Similarity=0.407 Sum_probs=196.4
Q ss_pred CCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeec----CCeEEEEE
Q 005760 395 SENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSN----EEFKALVL 467 (678)
Q Consensus 395 ~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~----~~~~~lv~ 467 (678)
++.+.||+|+||+||+|.. .++..||+|++.... ....+.|.+|+++++.++|||||++++++.+ ++.+|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 5667899999999999985 478999999996543 2345678999999999999999999999864 45689999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEcCCCCCCeeec-CCCcEEEEeeccccccCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQ--VIHCDLKPSNVLLD-DNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dl~~~Nill~-~~~~~kl~Dfg~~~~~~~ 544 (678)
||+++|+|.+++.+.. .+++..+..++.||+.||+||| +++ |+||||||+|||++ .+|.+||+|||+|+....
T Consensus 109 Ey~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~ 184 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA 184 (290)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred eCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence 9999999999998765 4899999999999999999999 887 99999999999998 589999999999976432
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
. ......||+.|||||++.+ .|+.++|||||||++|||+||+.||.+................+..
T Consensus 185 ~----~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~--------- 250 (290)
T 3fpq_A 185 S----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPAS--------- 250 (290)
T ss_dssp T----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGG---------
T ss_pred C----ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCC---------
Confidence 1 2335689999999998865 6999999999999999999999999653322111111111100000
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.+..+++++.+|+.+||++||++|||++|+++
T Consensus 251 ---------~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 251 ---------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp ---------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ---------CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 01123456889999999999999999999975
No 13
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2e-50 Score=401.88 Aligned_cols=245 Identities=25% Similarity=0.389 Sum_probs=191.0
Q ss_pred cCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
++|++.+.||+|+||+||+|.. .+|+.||+|++.... ....+.+.+|+++++.++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 6899999999999999999985 479999999996532 234567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+ +|+|.+++.+.+ .+++..+..++.||+.||+||| +++|+||||||+|||++.++++||+|||+|+.....
T Consensus 93 Ey~-~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~-- 165 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG-- 165 (275)
T ss_dssp ECC-CEEHHHHHHHSC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC--------
T ss_pred eCC-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCC--
Confidence 999 679999998765 4999999999999999999999 999999999999999999999999999999865432
Q ss_pred cceeecccCCccccCccccCCCCC-CccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRV-SANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
.......||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+..... .......... .-|
T Consensus 166 -~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~-~~~~i~~~~~-------~~p---- 232 (275)
T 3hyh_A 166 -NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV-LFKNISNGVY-------TLP---- 232 (275)
T ss_dssp ----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCC-------CCC----
T ss_pred -CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHcCCC-------CCC----
Confidence 22345679999999999988876 589999999999999999999997532211 1111111100 001
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
...++++.+++.+||++||++|||++|+++
T Consensus 233 ---------~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 233 ---------KFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ---------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 123456889999999999999999999986
No 14
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.9e-50 Score=407.62 Aligned_cols=247 Identities=26% Similarity=0.334 Sum_probs=196.8
Q ss_pred cCCCCCccccCCCceeEEEEEe----CCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARL----GDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
++|++.+.||+|+||+||+|+. .+++.||+|+++... ......+.+|+++++.++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 5699999999999999999974 257899999996542 2234567889999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
||||++||+|.+++.+.+ .+++..+..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.....
T Consensus 104 vmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 179 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH 179 (304)
T ss_dssp EECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred EEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence 999999999999998765 4899999999999999999999 999999999999999999999999999999865332
Q ss_pred CCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
. .......||+.|||||++.+..|+.++||||+||++|||++|+.||.+....+ .......... ..|
T Consensus 180 ~--~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~-~~~~i~~~~~-------~~p--- 246 (304)
T 3ubd_A 180 E--KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE-TMTMILKAKL-------GMP--- 246 (304)
T ss_dssp ---CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCC-------CCC---
T ss_pred C--ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH-HHHHHHcCCC-------CCC---
Confidence 2 22345679999999999999999999999999999999999999997633221 1111111100 001
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCH-----HHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINA-----KEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~-----~ell~ 665 (678)
..+++++.+|+.+||++||++|||+ +|+++
T Consensus 247 ----------~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~ 281 (304)
T 3ubd_A 247 ----------QFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR 281 (304)
T ss_dssp ----------TTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred ----------CcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence 1235568899999999999999984 56654
No 15
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=2e-48 Score=394.81 Aligned_cols=249 Identities=23% Similarity=0.371 Sum_probs=188.8
Q ss_pred cCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCC--------
Q 005760 392 DGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEE-------- 461 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-------- 461 (678)
++|++.+.||+|+||+||+|+. .+|+.||||+++.... ...+.+.+|+++++.++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 4588999999999999999985 4799999999975543 34467889999999999999999999986543
Q ss_pred ----eEEEEEEecCCCCHHHHhhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEe
Q 005760 462 ----FKALVLEYMPHGSLEKYLHSSNY--ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSD 535 (678)
Q Consensus 462 ----~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~D 535 (678)
..|+||||+++|+|.+++..... ..++..+..++.||++||+||| +++|+||||||+|||++.++.+||+|
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~D 161 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGD 161 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEcc
Confidence 36899999999999999986543 3456778899999999999999 99999999999999999999999999
Q ss_pred eccccccCCCCCc----------ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchh
Q 005760 536 FGIAKLLTREDQS----------TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLK 605 (678)
Q Consensus 536 fg~~~~~~~~~~~----------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~ 605 (678)
||+|+........ ......+||+.|||||++.+..|+.++||||+||++|||++ ||....+. .
T Consensus 162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~----~ 234 (299)
T 4g31_A 162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMER----V 234 (299)
T ss_dssp CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHH----H
T ss_pred CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHH----H
Confidence 9999876533211 12234579999999999999999999999999999999996 77542211 1
Q ss_pred hhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 606 HWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.......... .| ......++.+.+++.+||++||++|||+.|+++
T Consensus 235 ~~~~~~~~~~-----~p----------~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 235 RTLTDVRNLK-----FP----------PLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHHHTTC-----CC----------HHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHhcCC-----CC----------CCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111000000 00 111234456778999999999999999999986
No 16
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=4.8e-46 Score=387.77 Aligned_cols=199 Identities=22% Similarity=0.337 Sum_probs=170.2
Q ss_pred HhhcCCCCCccccCCCceeEEEEEe----CCCcEEEEEEeecccCchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeE
Q 005760 389 RATDGFSENNLIGRGSFGSVFKARL----GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFK 463 (678)
Q Consensus 389 ~~~~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~ 463 (678)
...++|++.+.||+|+||+||+|+. .+++.||+|++.... ....+.+|+++++.+ +||||+++++++.+.+..
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~ 95 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV 95 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence 4568899999999999999999974 257889999986442 335678899999988 699999999999999999
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCC-CcEEEEeecccccc
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDN-MVAHLSDFGIAKLL 542 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~-~~~kl~Dfg~~~~~ 542 (678)
|+||||+++|+|.+++. .+++..+..++.|++.||+||| ++||+||||||+|||++.+ +.+||+|||+|+..
T Consensus 96 ~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~ 168 (361)
T 4f9c_A 96 VIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGT 168 (361)
T ss_dssp EEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCccc
Confidence 99999999999999994 3889999999999999999999 9999999999999999876 89999999999765
Q ss_pred CCCCC--------------------------cceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCC
Q 005760 543 TREDQ--------------------------STIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTD 595 (678)
Q Consensus 543 ~~~~~--------------------------~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~ 595 (678)
..... .......+||+.|+|||++.+. .++.++||||+||++|||++|+.||.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~ 248 (361)
T 4f9c_A 169 HDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFY 248 (361)
T ss_dssp TTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred CCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCC
Confidence 43211 0112345799999999988775 48999999999999999999999995
Q ss_pred c
Q 005760 596 E 596 (678)
Q Consensus 596 ~ 596 (678)
.
T Consensus 249 ~ 249 (361)
T 4f9c_A 249 K 249 (361)
T ss_dssp C
T ss_pred C
Confidence 4
No 17
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-45 Score=389.31 Aligned_cols=269 Identities=26% Similarity=0.301 Sum_probs=201.4
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeec------CC
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSN------EE 461 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~------~~ 461 (678)
.++|++.+.||+|+||+||+|.. .+|+.||||+++.... ...+.+.+|+++|+.++|||||++++++.. .+
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 35799999999999999999985 4799999999965422 234667899999999999999999998753 46
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..|+||||++ |+|.+++...+ .+++..+..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~~~-~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHSSQ-PLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTSSS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEEeCCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeee
Confidence 7899999996 68999998665 5999999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCC--CcceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc--CCcc
Q 005760 542 LTRED--QSTIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL--PIST 616 (678)
Q Consensus 542 ~~~~~--~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~--~~~~ 616 (678)
+.... ........+||+.|+|||++.+. .++.++||||+||++|||++|+.||.+....+. +........ +...
T Consensus 208 ~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~-l~~I~~~~g~p~~~~ 286 (398)
T 4b99_A 208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQ-LQLIMMVLGTPSPAV 286 (398)
T ss_dssp C-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHH-HHHHHHHHCCCCGGG
T ss_pred cccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHH-HHHHHHhcCCCChHH
Confidence 64322 12234567899999999988775 469999999999999999999999976332111 111111000 0000
Q ss_pred ccccc--------CccCCccchhhH-HHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 617 KEIVD--------PNLLSREDINFV-AKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 617 ~~~~~--------~~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..... ..........+. .....++++.+|+.+||++||++|||+.|+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 00000 000000000000 00124567889999999999999999999875
No 18
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=4.2e-45 Score=403.74 Aligned_cols=252 Identities=19% Similarity=0.270 Sum_probs=209.3
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
.++|++.+.||+|+||.||+|.. .+|+.||+|++........+.+.+|+++|+.++|||||++++++.+.+.+|+||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 36899999999999999999985 47999999999765555567788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC--CCcEEEEeeccccccCCCCC
Q 005760 470 MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD--NMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~--~~~~kl~Dfg~~~~~~~~~~ 547 (678)
++||+|.+++......+++..+..++.||+.||+||| +++|+||||||+|||++. .+.+||+|||+|+.+...
T Consensus 236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~-- 310 (573)
T 3uto_A 236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK-- 310 (573)
T ss_dssp CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT--
T ss_pred cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCC--
Confidence 9999999999766667999999999999999999999 999999999999999985 489999999999877532
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.......||+.|+|||++.+..|+.++||||+||++|||++|+.||.+....+. +......... ..+
T Consensus 311 -~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~-~~~i~~~~~~------~~~----- 377 (573)
T 3uto_A 311 -QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDET-LRNVKSCDWN------MDD----- 377 (573)
T ss_dssp -SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH-HHHHHTTCCC------CCS-----
T ss_pred -CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH-HHHHHhCCCC------CCc-----
Confidence 223456799999999999999999999999999999999999999976332211 1111110000 000
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.....+++++.+|+.+||+.||++|||+.|+++
T Consensus 378 -----~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 378 -----SAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp -----GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -----ccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 001124556889999999999999999999986
No 19
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=1.4e-44 Score=395.87 Aligned_cols=248 Identities=21% Similarity=0.298 Sum_probs=199.3
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc---CchhhhHHH---HHHHHHhCCCccceeeeeeeecCCeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY---GRVFKSFDV---ECEMMKSIRHRNIIKVISSCSNEEFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~---e~~~l~~l~h~niv~~~~~~~~~~~~ 463 (678)
.++|++.+.||+|+||.||+|+. .+|+.||||++.... ......+.+ ++.+++.++|||||+++++|.+.+.+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 36799999999999999999985 479999999996432 222233333 45666778999999999999999999
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
|+||||++||+|.+++.+.+ .+++..+..++.||+.||+||| +++||||||||+|||++.+|++||+|||+|+...
T Consensus 268 ylVmEy~~GGdL~~~l~~~~-~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~ 343 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFS 343 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred EEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeecC
Confidence 99999999999999998765 4899999999999999999999 9999999999999999999999999999998764
Q ss_pred CCCCcceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccc-hhhhhhcccCCccccccc
Q 005760 544 REDQSTIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT-LKHWVNDWLPISTKEIVD 621 (678)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 621 (678)
... ....+||+.|||||++.+ ..|+.++||||+||++|||++|+.||.+....+.. +...+.... ..-
T Consensus 344 ~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~------~~~ 413 (689)
T 3v5w_A 344 KKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA------VEL 413 (689)
T ss_dssp SCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCC------CCC
T ss_pred CCC----CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCC------CCC
Confidence 332 234689999999999865 57999999999999999999999999764332211 111110000 000
Q ss_pred CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCC-----HHHHHH
Q 005760 622 PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRIN-----AKEIVT 665 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~ell~ 665 (678)
| ...++++.+|+.+||+.||++|++ ++|+++
T Consensus 414 p-------------~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 414 P-------------DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp C-------------TTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred C-------------ccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 1 123456889999999999999998 677754
No 20
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=7.6e-44 Score=368.84 Aligned_cols=279 Identities=34% Similarity=0.554 Sum_probs=229.9
Q ss_pred HHHHHhhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 385 LELCRATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 385 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
.++...+++|+..+.||+|+||.||+|..++++.||+|++........+.+.+|+++++.++||||+++++++.+.+..+
T Consensus 32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 111 (321)
T 2qkw_B 32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI 111 (321)
T ss_dssp SCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE
T ss_pred HHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence 34455778999999999999999999998889999999987766666788999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhCC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 465 LVLEYMPHGSLEKYLHSSN---YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
+||||+++|+|.+++.... ..+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.
T Consensus 112 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~ 188 (321)
T 2qkw_B 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKK 188 (321)
T ss_dssp EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTCEE
T ss_pred EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence 9999999999999997553 25889999999999999999999 89999999999999999999999999999986
Q ss_pred cCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCcc-chhhhhhc-ccCCccccc
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEM-TLKHWVND-WLPISTKEI 619 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 619 (678)
..............||+.|+|||.+.++.++.++|||||||++|||++|+.||......+. ....|... .........
T Consensus 189 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (321)
T 2qkw_B 189 GTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQI 268 (321)
T ss_dssp CSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSS
T ss_pred cccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHh
Confidence 5433333334455689999999999888999999999999999999999999976444322 22223221 112223334
Q ss_pred ccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHH
Q 005760 620 VDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRD 672 (678)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~ 672 (678)
.++...... ...++.++.+++.+||+.||++|||+.|+++.|+.+.+
T Consensus 269 ~~~~~~~~~------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 269 VDPNLADKI------RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp SSSSCTTCS------CHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cChhhcccc------CHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 444332211 23567789999999999999999999999999998864
No 21
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.1e-43 Score=362.41 Aligned_cols=265 Identities=26% Similarity=0.410 Sum_probs=217.9
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
.++|.+.+.||+|+||.||+|.. .+++.||+|++........+.+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 46788899999999999999986 47899999998665556678899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcc
Q 005760 470 MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQST 549 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~ 549 (678)
+++++|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.........
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 165 (310)
T 3s95_A 89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQP 165 (310)
T ss_dssp CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC------
T ss_pred cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceecccccccc
Confidence 9999999999986667999999999999999999999 9999999999999999999999999999998764332211
Q ss_pred ------------eeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccc
Q 005760 550 ------------IQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTK 617 (678)
Q Consensus 550 ------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 617 (678)
......||+.|+|||.+.+..++.++||||||+++|||++|..|+..................
T Consensus 166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~----- 240 (310)
T 3s95_A 166 EGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFL----- 240 (310)
T ss_dssp --------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHH-----
T ss_pred cccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccc-----
Confidence 111457999999999999999999999999999999999999998654332221111100000
Q ss_pred ccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHhh
Q 005760 618 EIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLLR 676 (678)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~~ 676 (678)
+. ..+..+++++.+++.+||+.||++|||+.|+++.|++++..+..
T Consensus 241 ---~~----------~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~ 286 (310)
T 3s95_A 241 ---DR----------YCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAG 286 (310)
T ss_dssp ---HH----------TCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred ---cc----------cCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccC
Confidence 00 00123445688999999999999999999999999999887643
No 22
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=1.8e-43 Score=365.88 Aligned_cols=276 Identities=23% Similarity=0.319 Sum_probs=211.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCC----eEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE----FKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~----~~~lv 466 (678)
.++|++.+.||+|+||.||+|+.. ++.||||++.... ........|+.+++.++||||+++++++.+.. ..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 467999999999999999999875 7999999996543 23344566888899999999999999987643 46999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC----------CeEEcCCCCCCeeecCCCcEEEEee
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSA----------QVIHCDLKPSNVLLDDNMVAHLSDF 536 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~----------~ivH~dl~~~Nill~~~~~~kl~Df 536 (678)
|||+++|+|.++++... +++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+||
T Consensus 101 ~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DF 175 (322)
T 3soc_A 101 TAFHEKGSLSDFLKANV--VSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF 175 (322)
T ss_dssp EECCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCC
T ss_pred EecCCCCCHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeEEEccC
Confidence 99999999999998754 899999999999999999999 88 9999999999999999999999999
Q ss_pred ccccccCCCCCcceeecccCCccccCccccCCC-----CCCccchHHHHHHHHHHHHcCCCCCCcccCCccc-hhhhhhc
Q 005760 537 GIAKLLTREDQSTIQTQTLATIGYMAPEYGKEG-----RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT-LKHWVND 610 (678)
Q Consensus 537 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~-~~~~~~~ 610 (678)
|+++...............||+.|+|||++.+. .++.++|||||||++|||++|+.||.+....... .......
T Consensus 176 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~ 255 (322)
T 3soc_A 176 GLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQ 255 (322)
T ss_dssp TTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCS
T ss_pred CcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhcc
Confidence 999876544433334456799999999998763 4667899999999999999999999764332111 1000000
Q ss_pred ccC-CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 611 WLP-ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 611 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
... ........................++.++.+++.+||+.||++|||+.|+++.|+++++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 256 HPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 000 000000000001111111112234667799999999999999999999999999999865
No 23
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=6.6e-43 Score=362.68 Aligned_cols=280 Identities=36% Similarity=0.566 Sum_probs=229.6
Q ss_pred ccCCHHHHHHhhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeee
Q 005760 380 RMFSYLELCRATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCS 458 (678)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~ 458 (678)
..++..++....++|++.+.||+|+||.||+|..++++.||+|++..... .....+.+|+++++.++||||+++++++.
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~ 97 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 97 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEEC
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEe
Confidence 45788999999999999999999999999999988899999999865432 23346889999999999999999999999
Q ss_pred cCCeEEEEEEecCCCCHHHHhhhCCC---CCCHHHHHHHHHHHHHHHHHHhcCCCC---CeEEcCCCCCCeeecCCCcEE
Q 005760 459 NEEFKALVLEYMPHGSLEKYLHSSNY---ILDIYQRLNIMIDVASALEYLHFGYSA---QVIHCDLKPSNVLLDDNMVAH 532 (678)
Q Consensus 459 ~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~i~~~i~~~l~~LH~~~~~---~ivH~dl~~~Nill~~~~~~k 532 (678)
+.+..++||||+++|+|.+++..... .+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+|
T Consensus 98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~ivH~Dlkp~Nil~~~~~~~k 174 (326)
T 3uim_A 98 TPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLH---DHCDPKIIHRDVKAANILLDEEFEAV 174 (326)
T ss_dssp CSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHH---HSSSSCEECCCCSGGGEEECTTCCEE
T ss_pred cCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCeEeCCCchhhEEECCCCCEE
Confidence 99999999999999999999986432 4899999999999999999999 66 999999999999999999999
Q ss_pred EEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcc---cCCccchhhhhh
Q 005760 533 LSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEI---FNGEMTLKHWVN 609 (678)
Q Consensus 533 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~---~~~~~~~~~~~~ 609 (678)
|+|||++....... ........||+.|+|||.+.+..++.++||||+||++|||++|+.||+.. .........|+.
T Consensus 175 l~Dfg~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 253 (326)
T 3uim_A 175 VGDFGLAKLMDYKD-THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVK 253 (326)
T ss_dssp ECCCSSCEECCSSS-SCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHT
T ss_pred eccCccccccCccc-ccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHH
Confidence 99999998764332 23344566999999999998888999999999999999999999999642 222333444544
Q ss_pred cccCC-cccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHH
Q 005760 610 DWLPI-STKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLK 669 (678)
Q Consensus 610 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~ 669 (678)
..... ......+....... ...++.++.+++.+||+.||++|||++|+++.|+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~ 308 (326)
T 3uim_A 254 GLLKEKKLEALVDVDLQGNY------KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308 (326)
T ss_dssp TTTSSCCSTTSSCTTCTTSC------CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred HHhhchhhhhhcChhhcccc------CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence 33322 23333333332221 23567789999999999999999999999999974
No 24
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=1.7e-42 Score=354.23 Aligned_cols=251 Identities=27% Similarity=0.341 Sum_probs=209.7
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
..++|++.+.||+|+||.||+|.. .+++.||+|++........+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus 18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 97 (297)
T 3fxz_A 18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME 97 (297)
T ss_dssp GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence 457899999999999999999985 5799999999987666666788999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
|+++++|.+++.... +++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++.......
T Consensus 98 ~~~~~~L~~~~~~~~--~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 170 (297)
T 3fxz_A 98 YLAGGSLTDVVTETC--MDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ-- 170 (297)
T ss_dssp CCTTCBHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT--
T ss_pred CCCCCCHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc--
Confidence 999999999998763 899999999999999999999 8999999999999999999999999999998765332
Q ss_pred ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCcc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSRE 628 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (678)
.......||+.|+|||.+.+..++.++||||+||++|||++|+.||......... ........ .....
T Consensus 171 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~-~~~~~~~~----~~~~~------- 238 (297)
T 3fxz_A 171 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRAL-YLIATNGT----PELQN------- 238 (297)
T ss_dssp CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH-HHHHHHCS----CCCSC-------
T ss_pred cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH-HHHHhCCC----CCCCC-------
Confidence 2234567999999999999999999999999999999999999999653221111 11100000 00000
Q ss_pred chhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 629 DINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 629 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
+..++..+.+++.+||+.||++|||+.|+++
T Consensus 239 ------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 239 ------PEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp ------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ------ccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 1124556889999999999999999999976
No 25
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=4.9e-43 Score=369.30 Aligned_cols=261 Identities=28% Similarity=0.442 Sum_probs=213.8
Q ss_pred hcCCCCCccccCCCceeEEEEEe--------CCCcEEEEEEeecccC-chhhhHHHHHHHHHhC-CCccceeeeeeeecC
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL--------GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSI-RHRNIIKVISSCSNE 460 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~--------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~ 460 (678)
.++|++.+.||+|+||.||+|.. .++..||+|+++.... ...+.+.+|+++++.+ +||||+++++++.+.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 46788999999999999999974 2456799999975432 3456788999999999 899999999999999
Q ss_pred CeEEEEEEecCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee
Q 005760 461 EFKALVLEYMPHGSLEKYLHSSN---------------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL 525 (678)
Q Consensus 461 ~~~~lv~e~~~~~~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill 525 (678)
+..++||||+++|+|.+++.... ..+++..+..++.||+.||+||| +++|+||||||+||++
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEE
Confidence 99999999999999999998653 24788999999999999999999 9999999999999999
Q ss_pred cCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccch
Q 005760 526 DDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTL 604 (678)
Q Consensus 526 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~ 604 (678)
+.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+....+ .
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~--~ 314 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--L 314 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--H
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHH--H
Confidence 9999999999999987654433333344567889999999999999999999999999999999 999987633221 1
Q ss_pred hhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 605 KHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
...+..... +. .+..++.++.+++.+||+.||++||++.|+++.|+++.+..
T Consensus 315 ~~~~~~~~~--------~~----------~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~ 366 (370)
T 2psq_A 315 FKLLKEGHR--------MD----------KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 366 (370)
T ss_dssp HHHHHTTCC--------CC----------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC--------CC----------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 111110000 00 01134566899999999999999999999999999998654
No 26
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=9e-44 Score=376.28 Aligned_cols=260 Identities=29% Similarity=0.453 Sum_probs=213.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
.++|.+.+.||+|+||.||+|... +++.||||++..... ...+.+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 467888999999999999999875 789999999875432 344678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
|+++|+|.++++.....+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++........
T Consensus 193 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~ 269 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYA 269 (377)
T ss_dssp CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEE
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCcee
Confidence 99999999999876666899999999999999999999 999999999999999999999999999999765332211
Q ss_pred ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.......+++.|+|||.+.++.++.++|||||||++|||++ |..||....... ....+.... ...
T Consensus 270 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~--~~~~~~~~~-----~~~------- 335 (377)
T 3cbl_A 270 ASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ--TREFVEKGG-----RLP------- 335 (377)
T ss_dssp CCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH--HHHHHHTTC-----CCC-------
T ss_pred ecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC-----CCC-------
Confidence 11222345778999999998899999999999999999998 999987633221 111111100 000
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
.+..++.++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 336 ------~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 336 ------CPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp ------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ------CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 0112456688999999999999999999999999999865
No 27
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.4e-43 Score=362.61 Aligned_cols=260 Identities=27% Similarity=0.434 Sum_probs=210.7
Q ss_pred hcCCCCCccccCCCceeEEEEEeC----CCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG----DGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
.++|++.+.||+|+||.||+|... .+..||||++.... ....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 356888899999999999999863 45569999997543 2345678999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
||||+++++|.++++.....+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 204 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD 204 (325)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC--
T ss_pred EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccC
Confidence 99999999999999877667999999999999999999999 999999999999999999999999999999876543
Q ss_pred CC-cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 546 DQ-STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 546 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
.. ........+|+.|+|||.+.+..++.++|||||||++|||++ |..||......+ ....+..... ..
T Consensus 205 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~~~~~-----~~--- 274 (325)
T 3kul_A 205 PDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD--VISSVEEGYR-----LP--- 274 (325)
T ss_dssp --CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH--HHHHHHTTCC-----CC---
T ss_pred ccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH--HHHHHHcCCC-----CC---
Confidence 22 222334456788999999998899999999999999999999 999986533221 1111110000 00
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
.+..++.++.+++.+||+.||++|||+.|+++.|+++.++
T Consensus 275 ----------~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~ 314 (325)
T 3kul_A 275 ----------APMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS 314 (325)
T ss_dssp ----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred ----------CCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence 0012456688999999999999999999999999998754
No 28
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=3.2e-41 Score=346.91 Aligned_cols=281 Identities=29% Similarity=0.484 Sum_probs=225.7
Q ss_pred ccCCHHHHHHhhcCCCCC------ccccCCCceeEEEEEeCCCcEEEEEEeeccc----CchhhhHHHHHHHHHhCCCcc
Q 005760 380 RMFSYLELCRATDGFSEN------NLIGRGSFGSVFKARLGDGMEVAMKVFNLQY----GRVFKSFDVECEMMKSIRHRN 449 (678)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~------~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~n 449 (678)
..+++.++..++++|... +.||+|+||.||+|.. +++.||+|++.... ....+.+.+|+.+++.++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 457889999999998877 8999999999999987 68899999986432 234577889999999999999
Q ss_pred ceeeeeeeecCCeEEEEEEecCCCCHHHHhhhC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC
Q 005760 450 IIKVISSCSNEEFKALVLEYMPHGSLEKYLHSS--NYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD 527 (678)
Q Consensus 450 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~ 527 (678)
|+++++++.+.+..++||||+++++|.+++... ...+++..+..++.|++.||+||| +++|+||||||+||+++.
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~ 168 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDE 168 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECT
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEEcC
Confidence 999999999999999999999999999998743 335899999999999999999999 899999999999999999
Q ss_pred CCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhh
Q 005760 528 NMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHW 607 (678)
Q Consensus 528 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~ 607 (678)
++.+||+|||++................|++.|+|||.+.+ .++.++||||||+++|+|++|..||........ ...+
T Consensus 169 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~-~~~~ 246 (307)
T 2nru_A 169 AFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQL-LLDI 246 (307)
T ss_dssp TCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSB-TTHH
T ss_pred CCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHH-HHHH
Confidence 99999999999987654433334445679999999998765 588999999999999999999999976443321 1122
Q ss_pred hhccc--CCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 608 VNDWL--PISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 608 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
..... ........++.... .+..++..+.+++.+||+.||++|||+.|+++.|+++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~s 307 (307)
T 2nru_A 247 KEEIEDEEKTIEDYIDKKMND-------ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS 307 (307)
T ss_dssp HHHHHTTSCCHHHHSCSSCSC-------CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC--
T ss_pred HHHhhhhhhhhhhhccccccc-------cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhcC
Confidence 11111 11122222222211 1134667799999999999999999999999999998653
No 29
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.1e-42 Score=357.46 Aligned_cols=261 Identities=29% Similarity=0.408 Sum_probs=204.6
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
....++|++.+.||+|+||.||+|+. +|+.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++
T Consensus 33 ~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 3p86_A 33 DIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI 111 (309)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEE
T ss_pred cCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEE
Confidence 34467899999999999999999987 688999999865432 334678899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 466 VLEYMPHGSLEKYLHSSNY--ILDIYQRLNIMIDVASALEYLHFGYSAQ--VIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
||||+++++|.+++..... .+++..+..++.|++.||+||| +++ |+||||||+||+++.++.+||+|||+++.
T Consensus 112 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 188 (309)
T 3p86_A 112 VTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL 188 (309)
T ss_dssp EEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC----
T ss_pred EEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCcc
Confidence 9999999999999986542 3889999999999999999999 889 99999999999999999999999999975
Q ss_pred cCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccccccc
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVD 621 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (678)
.... ........||+.|+|||.+.+..++.++||||+||++|||++|+.||........ ...+.... .....
T Consensus 189 ~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~--~~~~~~~~----~~~~~ 260 (309)
T 3p86_A 189 KAST--FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQV--VAAVGFKC----KRLEI 260 (309)
T ss_dssp ---------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHH--HHHHHHSC----CCCCC
T ss_pred cccc--ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHhcC----CCCCC
Confidence 4322 2223456789999999999999999999999999999999999999975332211 11110000 00000
Q ss_pred CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 622 PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
+ ..+++++.+++.+||+.||++|||+.|+++.|+.+.++
T Consensus 261 ~-------------~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~ 299 (309)
T 3p86_A 261 P-------------RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS 299 (309)
T ss_dssp C-------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred C-------------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 0 12345688999999999999999999999999998765
No 30
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=8e-43 Score=351.61 Aligned_cols=258 Identities=28% Similarity=0.440 Sum_probs=214.0
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEec
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEYM 470 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 470 (678)
.++|++.+.||+|+||.||+|...+++.||+|++..... ..+.+.+|+++++.++||||+++++++.+.+..++||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 357888999999999999999988899999999975432 3467899999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcce
Q 005760 471 PHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQSTI 550 (678)
Q Consensus 471 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~ 550 (678)
++++|.+++......+++..+..++.|++.|++||| +++|+||||||+||+++.++.+||+|||++....... ...
T Consensus 88 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~ 163 (269)
T 4hcu_A 88 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTS 163 (269)
T ss_dssp TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHS
T ss_pred CCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccc-ccc
Confidence 999999999877777999999999999999999999 9999999999999999999999999999998654321 222
Q ss_pred eecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCccc
Q 005760 551 QTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSRED 629 (678)
Q Consensus 551 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (678)
.....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+.... ....+.
T Consensus 164 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~--~~~~~~~~~-----~~~~~~------ 230 (269)
T 4hcu_A 164 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--VVEDISTGF-----RLYKPR------ 230 (269)
T ss_dssp TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTTC-----CCCCCT------
T ss_pred ccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH--HHHHHhcCc-----cCCCCC------
Confidence 334556788999999998899999999999999999999 899987532211 111111000 001111
Q ss_pred hhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 630 INFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 630 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
.++.++.+++.+||+.||++||++.|+++.|+++.++
T Consensus 231 -------~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 231 -------LASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp -------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -------cCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 1245588999999999999999999999999999764
No 31
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=4.2e-42 Score=352.94 Aligned_cols=264 Identities=26% Similarity=0.438 Sum_probs=206.5
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
..++|.+.+.||+|+||.||+|... ..+|+|+++... ....+.+.+|+++++.++||||+++++++.. +..++||
T Consensus 34 ~~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~lv~ 110 (307)
T 3lb7_A 34 EASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred cccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-CcEEEEE
Confidence 3568999999999999999999864 358999886532 2345678899999999999999999998764 4578999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+++++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 111 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~ 187 (307)
T 3lb7_A 111 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp ECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC------
T ss_pred ecCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCChhhEEEcCCCCEEEccCCCceecccccc
Confidence 999999999999877777999999999999999999999 89999999999999999999999999999976543333
Q ss_pred cceeecccCCccccCccccC---CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 548 STIQTQTLATIGYMAPEYGK---EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
........||+.|+|||.+. +..++.++|||||||++|||++|+.||......+.................+
T Consensus 188 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~----- 262 (307)
T 3lb7_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKL----- 262 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTCCCCCSTTS-----
T ss_pred cccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHhcCCCCcchhhh-----
Confidence 33344567999999999875 5668899999999999999999999997643322111111111111000000
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
. ..+++++.+++.+||+.||++||++.|+++.|+.++..+
T Consensus 263 ~----------~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~ 302 (307)
T 3lb7_A 263 Y----------KNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp C----------SSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred h----------cCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhc
Confidence 0 124566889999999999999999999999999987654
No 32
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=9.7e-43 Score=350.81 Aligned_cols=258 Identities=26% Similarity=0.413 Sum_probs=213.7
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEec
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEYM 470 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 470 (678)
.++|++.+.||+|+||.||+|..+++..||+|++..... ..+.+.+|+++++.++||||+++++++.+.+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 467889999999999999999988888999999975432 3467899999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcce
Q 005760 471 PHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQSTI 550 (678)
Q Consensus 471 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~ 550 (678)
++++|.+++......+++..++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++....... ...
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~~ 161 (268)
T 3sxs_A 86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ-YVS 161 (268)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC-EEE
T ss_pred CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhh-hhc
Confidence 999999999877666999999999999999999999 8999999999999999999999999999998764332 223
Q ss_pred eecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCccc
Q 005760 551 QTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSRED 629 (678)
Q Consensus 551 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (678)
.....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||......+.. ....... ....+.
T Consensus 162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~-~~~~~~~------~~~~~~------ 228 (268)
T 3sxs_A 162 SVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVV-LKVSQGH------RLYRPH------ 228 (268)
T ss_dssp CCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH-HHHHTTC------CCCCCT------
T ss_pred ccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHH-HHHHcCC------CCCCCC------
Confidence 344556788999999988889999999999999999999 99998653322111 1110000 001111
Q ss_pred hhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 630 INFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 630 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
.+++++.+++.+||+.||++|||+.|+++.|+++++.
T Consensus 229 -------~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 229 -------LASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp -------TSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred -------cChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 1234588999999999999999999999999988654
No 33
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=2.3e-42 Score=363.74 Aligned_cols=271 Identities=23% Similarity=0.380 Sum_probs=218.6
Q ss_pred CCHHHHHHhhcCCCCCccccCCCceeEEEEEe------CCCcEEEEEEeecccC-chhhhHHHHHHHHHhC-CCccceee
Q 005760 382 FSYLELCRATDGFSENNLIGRGSFGSVFKARL------GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSI-RHRNIIKV 453 (678)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~ 453 (678)
+...+.....++|++.+.||+|+||.||+|++ .+++.||||++..... ...+.+.+|+++++.+ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 34455566788999999999999999999973 3568899999975433 3346789999999999 79999999
Q ss_pred eeeeecCC-eEEEEEEecCCCCHHHHhhhCCC------------------------------------------------
Q 005760 454 ISSCSNEE-FKALVLEYMPHGSLEKYLHSSNY------------------------------------------------ 484 (678)
Q Consensus 454 ~~~~~~~~-~~~lv~e~~~~~~L~~~l~~~~~------------------------------------------------ 484 (678)
++++.+.+ ..++||||+++|+|.++++....
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence 99987754 48999999999999999976532
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 485 -----------------ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 485 -----------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
.+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.......
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 248 (359)
T 3vhe_A 172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 248 (359)
T ss_dssp ------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence 2788999999999999999999 89999999999999999999999999999987654444
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+....+............ ..+
T Consensus 249 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~------~~~---- 318 (359)
T 3vhe_A 249 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM------RAP---- 318 (359)
T ss_dssp CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCC------CCC----
T ss_pred chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCC------CCC----
Confidence 444556678999999999999999999999999999999998 999997644332211111111000 000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
..+++++.+++.+||+.||++|||+.|+++.|+++.+..
T Consensus 319 ---------~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 357 (359)
T 3vhe_A 319 ---------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 357 (359)
T ss_dssp ---------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence 123456889999999999999999999999999998764
No 34
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.2e-42 Score=355.35 Aligned_cols=272 Identities=26% Similarity=0.429 Sum_probs=210.0
Q ss_pred hcCCCCCccccCCCceeEEEEEe-----CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeec--CCeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-----GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSN--EEFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~ 463 (678)
.++|++.+.||+|+||.||+|++ .+++.||+|++........+.+.+|+++++.++||||+++++++.. ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46789999999999999999973 3689999999976655566788999999999999999999999854 3568
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
++||||+++++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~ 165 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 165 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC---
T ss_pred EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCccccccc
Confidence 9999999999999999887767999999999999999999999 8999999999999999999999999999998764
Q ss_pred CCCC-cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCC-----ccc
Q 005760 544 REDQ-STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPI-----STK 617 (678)
Q Consensus 544 ~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~-----~~~ 617 (678)
.... ........++..|+|||.+.+..++.++||||+|+++|||++|..|+....... .......... ...
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 242 (295)
T 3ugc_A 166 QDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEF---MRMIGNDKQGQMIVFHLI 242 (295)
T ss_dssp ----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHH---HHHHCTTCCTHHHHHHHH
T ss_pred CCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHH---HhhhcCccccchhHHHHH
Confidence 3322 122334557788999999999999999999999999999999999986432110 0000000000 000
Q ss_pred ccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 618 EIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
........ ...+..+++++.+++.+||+.||++|||+.|+++.|+++++++
T Consensus 243 ~~~~~~~~------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 243 ELLKNNGR------LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp HHHHTTCC------CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HHHhccCc------CCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 00000000 0011235667999999999999999999999999999998765
No 35
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=2.3e-42 Score=357.57 Aligned_cols=248 Identities=25% Similarity=0.327 Sum_probs=205.4
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
..++|++.+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 356899999999999999999986 589999999997543 23456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++++|.+++...+ .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++.......
T Consensus 93 ~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 168 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG 168 (328)
T ss_dssp ECCCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC
T ss_pred EECCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC
Confidence 99999999999997665 4899999999999999999999 9999999999999999999999999999997664322
Q ss_pred CcceeecccCCccccCccccCCCCCC-ccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVS-ANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~-~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
......||+.|+|||++.+..+. .++||||+||++|||++|+.||.+...... ......... ..|
T Consensus 169 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~i~~~~~-------~~p--- 234 (328)
T 3fe3_A 169 ---KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKEL-RERVLRGKY-------RIP--- 234 (328)
T ss_dssp ---GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCC-------CCC---
T ss_pred ---ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCC-------CCC---
Confidence 23456799999999999888765 789999999999999999999976322111 011111000 000
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..+++++.+++.+||+.||.+|||++|+++
T Consensus 235 ----------~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 235 ----------FYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp ----------TTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred ----------CCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 113455889999999999999999999975
No 36
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=2.8e-41 Score=349.07 Aligned_cols=260 Identities=24% Similarity=0.310 Sum_probs=213.1
Q ss_pred cCCHHHHHHhhcC----------CCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCcc
Q 005760 381 MFSYLELCRATDG----------FSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRN 449 (678)
Q Consensus 381 ~~~~~~~~~~~~~----------~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n 449 (678)
.++++++..+++. |+..+.||+|+||.||+|... +|+.||||++........+.+.+|+.+++.++|||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n 103 (321)
T 2c30_A 24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN 103 (321)
T ss_dssp -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT
T ss_pred cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC
Confidence 3567777666653 666789999999999999865 79999999998766666678899999999999999
Q ss_pred ceeeeeeeecCCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC
Q 005760 450 IIKVISSCSNEEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM 529 (678)
Q Consensus 450 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~ 529 (678)
|+++++++...+..++||||+++++|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 104 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~ 178 (321)
T 2c30_A 104 VVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDG 178 (321)
T ss_dssp BCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTC
T ss_pred cceEEEEEEECCEEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCC
Confidence 999999999999999999999999999998754 4899999999999999999999 89999999999999999999
Q ss_pred cEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhh
Q 005760 530 VAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVN 609 (678)
Q Consensus 530 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~ 609 (678)
.+||+|||++....... .......||+.|+|||++.+..++.++||||||+++|||++|+.||...... .....+.
T Consensus 179 ~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~--~~~~~~~ 254 (321)
T 2c30_A 179 RVKLSDFGFCAQISKDV--PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPV--QAMKRLR 254 (321)
T ss_dssp CEEECCCTTCEECCSSS--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHH
T ss_pred cEEEeeeeeeeecccCc--cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHh
Confidence 99999999998764322 1234567999999999999999999999999999999999999999653221 1111111
Q ss_pred cccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 610 DWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
... .+.... ...+++++.+++.+||+.||++|||+.|+++
T Consensus 255 ~~~--------~~~~~~--------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 255 DSP--------PPKLKN--------SHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HSS--------CCCCTT--------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cCC--------CCCcCc--------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 110 011000 1123456889999999999999999999986
No 37
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=1.9e-41 Score=347.53 Aligned_cols=265 Identities=27% Similarity=0.406 Sum_probs=205.2
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHh--CCCccceeeeeeeec----CCeEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKS--IRHRNIIKVISSCSN----EEFKA 464 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~----~~~~~ 464 (678)
.++|++.+.||+|+||.||+|.. +++.||||++... ....+..|.+++.. ++||||+++++++.+ ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 56899999999999999999988 6899999998643 33556667777776 789999999998643 45688
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEEcCCCCCCeeecCCCcEEEEeeccc
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGY-----SAQVIHCDLKPSNVLLDDNMVAHLSDFGIA 539 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~ 539 (678)
+||||+++|+|.++++.. .+++..+..++.|++.||+|||+.. +++|+||||||+||+++.++.+||+|||++
T Consensus 83 lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a 160 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA 160 (301)
T ss_dssp EEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCe
Confidence 999999999999999654 4899999999999999999999322 578999999999999999999999999999
Q ss_pred cccCCCCCcc--eeecccCCccccCccccCCC------CCCccchHHHHHHHHHHHHcC----------CCCCCcccCCc
Q 005760 540 KLLTREDQST--IQTQTLATIGYMAPEYGKEG------RVSANGDVYSFGIMLMETFTR----------KKPTDEIFNGE 601 (678)
Q Consensus 540 ~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~------~~~~~~DvwslGv~l~ell~g----------~~p~~~~~~~~ 601 (678)
+......... ......||+.|+|||.+.+. .++.++|||||||++|||++| +.||.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~ 240 (301)
T 3q4u_A 161 VMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPND 240 (301)
T ss_dssp EEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS
T ss_pred eecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCC
Confidence 7654332211 12344799999999998876 455789999999999999999 77876644443
Q ss_pred cchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHH
Q 005760 602 MTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKI 670 (678)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~ 670 (678)
.............. ..+... .......++.++.+++.+||+.||++|||+.|+++.|+++
T Consensus 241 ~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 241 PSFEDMRKVVCVDQ----QRPNIP-----NRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CCHHHHHHHHTTSC----CCCCCC-----GGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cchhhhhHHHhccC----CCCCCC-----hhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 33322222111100 001000 0111234677899999999999999999999999999986
No 38
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=2e-42 Score=364.94 Aligned_cols=260 Identities=25% Similarity=0.469 Sum_probs=201.2
Q ss_pred hcCCCCCccccCCCceeEEEEEeC----CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG----DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
.++|++.+.||+|+||.||+|+.. ++..||||+++.... ...+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 457999999999999999999854 577899999975432 345678999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
||||+++++|.++++.....+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.....
T Consensus 124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 200 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDD 200 (373)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccC
Confidence 99999999999999887767999999999999999999999 899999999999999999999999999999876433
Q ss_pred CCc-ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 546 DQS-TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 546 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
... .......+++.|+|||++.+..++.++|||||||++|||++ |+.||......+ ....+.... . .+
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~--~~~~i~~~~-----~--~~- 270 (373)
T 2qol_A 201 PEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD--VIKAVDEGY-----R--LP- 270 (373)
T ss_dssp -------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH--HHHHHHTTE-----E--CC-
T ss_pred CccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC-----C--CC-
Confidence 211 11223345778999999999999999999999999999998 999986533211 111111000 0 00
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
.+..++.++.+++.+||+.||++||++.|+++.|+++..+
T Consensus 271 ----------~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 271 ----------PPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp ----------CCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ----------CCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 0012456688999999999999999999999999998754
No 39
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=7.8e-42 Score=353.48 Aligned_cols=253 Identities=23% Similarity=0.349 Sum_probs=206.3
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
.++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 368999999999999999999865 899999999865432 334678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
|+++++|.+++.... .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++..+......
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 161 (323)
T 3tki_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (323)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred cCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcc
Confidence 999999999997654 4899999999999999999999 999999999999999999999999999999866433333
Q ss_pred ceeecccCCccccCccccCCCCC-CccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRV-SANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.......||+.|+|||++.+..+ +.++||||+||++|||++|+.||............+....... .
T Consensus 162 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~------~------ 229 (323)
T 3tki_A 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL------N------ 229 (323)
T ss_dssp CCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTS------T------
T ss_pred cccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccC------C------
Confidence 33445679999999999887775 7789999999999999999999976444333332222111000 0
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....++.++.+++.+||+.||++|||+.|+++
T Consensus 230 ------~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 230 ------PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp ------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ------ccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 00123456789999999999999999999975
No 40
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=354.37 Aligned_cols=250 Identities=25% Similarity=0.329 Sum_probs=197.2
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
..++|++.+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 357899999999999999999985 589999999996543 234567889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+++|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 88 E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~- 162 (347)
T 3zgw_A 88 EYCPGGELFDYIISQD-RLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNK- 162 (347)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC------
T ss_pred eCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCCC-
Confidence 9999999999997665 4899999999999999999999 8999999999999999999999999999987654322
Q ss_pred cceeecccCCccccCccccCCCCC-CccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRV-SANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
........||+.|+|||++.+..+ +.++||||+||++|||++|..||.+..... .......... ..+
T Consensus 163 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~-~~~~i~~~~~-------~~p---- 230 (347)
T 3zgw_A 163 DYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMA-LYKKIMRGKY-------DVP---- 230 (347)
T ss_dssp ---------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCC-------CCC----
T ss_pred CccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHcCCC-------CCC----
Confidence 222344579999999999988775 889999999999999999999997532111 1111111000 001
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..+++++.+++.+||+.||++|||++|+++
T Consensus 231 ---------~~~s~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 231 ---------KWLSPSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp ---------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---------CCCCHHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 113455789999999999999999999986
No 41
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=2.4e-41 Score=348.13 Aligned_cols=268 Identities=22% Similarity=0.322 Sum_probs=206.7
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
..++|++.+.||+|+||+||+|+..+|+.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 357899999999999999999998889999999986542 233467889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+++ +|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.....
T Consensus 99 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~-- 172 (311)
T 3niz_A 99 EFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIP-- 172 (311)
T ss_dssp ECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSC--
T ss_pred cCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCC--
Confidence 99975 899988877777999999999999999999999 999999999999999999999999999999876432
Q ss_pred cceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcc---cCCccccccc--
Q 005760 548 STIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDW---LPISTKEIVD-- 621 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-- 621 (678)
........+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+. ........ .+.......+
T Consensus 173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3niz_A 173 VRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQ-LPKIFSILGTPNPREWPQVQELP 251 (311)
T ss_dssp CC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTH-HHHHHHHHCCCCTTTSGGGTTSH
T ss_pred cccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHHCCCChHHhhhhhccc
Confidence 222344578999999998876 5689999999999999999999999976444322 11111100 0000000000
Q ss_pred ----Ccc--CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 622 ----PNL--LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 622 ----~~~--~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
... ...... ......+++++.+++.+||++||++|||++|+++
T Consensus 252 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 252 LWKQRTFQVFEKKPW-SSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHHSCCCCCCCCCCH-HHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hhhhcccccccCCcH-HHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 000 000000 0011234567899999999999999999999986
No 42
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=3.9e-42 Score=349.32 Aligned_cols=259 Identities=24% Similarity=0.436 Sum_probs=211.1
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
..++|++.+.||+|+||.||+|...++..||+|++..... ..+.+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 3567888999999999999999998889999999975432 346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcc
Q 005760 470 MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQST 549 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~ 549 (678)
+++++|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++....... ..
T Consensus 101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~ 176 (283)
T 3gen_A 101 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YT 176 (283)
T ss_dssp CTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-HH
T ss_pred cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccc-cc
Confidence 9999999999875566999999999999999999999 9999999999999999999999999999998654321 12
Q ss_pred eeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCcc
Q 005760 550 IQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSRE 628 (678)
Q Consensus 550 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (678)
......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||........ ....... . ....+
T Consensus 177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~-~~~~~~~-~-----~~~~~------ 243 (283)
T 3gen_A 177 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSET-AEHIAQG-L-----RLYRP------ 243 (283)
T ss_dssp STTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH-HHHHHTT-C-----CCCCC------
T ss_pred cccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHH-HHHHhcc-c-----CCCCC------
Confidence 2234456788999999998899999999999999999998 9999875332211 1111110 0 00001
Q ss_pred chhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 629 DINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 629 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
..+++++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 244 -------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 244 -------HLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp -------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -------CcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 11234588999999999999999999999999998754
No 43
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=4.7e-42 Score=354.08 Aligned_cols=266 Identities=23% Similarity=0.383 Sum_probs=218.1
Q ss_pred hhcCCCCCccccCCCceeEEEEEe------CCCcEEEEEEeecccC-chhhhHHHHHHHHHhC-CCccceeeeeeeecCC
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL------GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSI-RHRNIIKVISSCSNEE 461 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~ 461 (678)
..++|++.+.||+|+||.||+|.. .+++.||+|++..... ...+.+.+|+.+++.+ +||||+++++++.+.+
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 100 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 100 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence 456889999999999999999974 3578899999975433 3457788999999999 8999999999999999
Q ss_pred eEEEEEEecCCCCHHHHhhhCCC-----------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCee
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNY-----------------ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVL 524 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~-----------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nil 524 (678)
..++||||+++|+|.+++..... .+++..++.++.|++.||+||| +++|+||||||+||+
T Consensus 101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil 177 (313)
T 1t46_A 101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNIL 177 (313)
T ss_dssp SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEE
T ss_pred CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEE
Confidence 99999999999999999986543 3889999999999999999999 899999999999999
Q ss_pred ecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccc
Q 005760 525 LDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMT 603 (678)
Q Consensus 525 l~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~ 603 (678)
++.++.+||+|||++................+++.|+|||.+.+..++.++||||||+++|||++ |..||........
T Consensus 178 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~- 256 (313)
T 1t46_A 178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK- 256 (313)
T ss_dssp EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH-
T ss_pred EcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH-
Confidence 99999999999999987765444334445567889999999988899999999999999999999 9999876433221
Q ss_pred hhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHhhc
Q 005760 604 LKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLLRN 677 (678)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~~~ 677 (678)
....+..... ...+ ..++.++.+++.+||+.||++|||+.|+++.|+++.++...+
T Consensus 257 ~~~~~~~~~~-----~~~~-------------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~ 312 (313)
T 1t46_A 257 FYKMIKEGFR-----MLSP-------------EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNH 312 (313)
T ss_dssp HHHHHHHTCC-----CCCC-------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHhccCCC-----CCCc-------------ccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHhhcC
Confidence 1111111000 0000 123456889999999999999999999999999998876554
No 44
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-41 Score=351.57 Aligned_cols=251 Identities=20% Similarity=0.302 Sum_probs=207.9
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
.++|++.+.||+|+||.||+|... +++.||+|++... ......+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 468999999999999999999854 7899999998644 33456688999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC--CCcEEEEeeccccccCCCCC
Q 005760 470 MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD--NMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~--~~~~kl~Dfg~~~~~~~~~~ 547 (678)
+++++|.+++......+++..+..++.|++.||.||| +++|+||||||+||+++. ++.+||+|||++.......
T Consensus 83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~- 158 (321)
T 1tki_A 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD- 158 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC-
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC-
Confidence 9999999999877667999999999999999999999 999999999999999987 8899999999998764322
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
......+|+.|+|||++.+..++.++||||+||++|+|++|..||....... ...........
T Consensus 159 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~-------------- 221 (321)
T 1tki_A 159 --NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ-IIENIMNAEYT-------------- 221 (321)
T ss_dssp --EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHTCCC--------------
T ss_pred --ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH-HHHHHHcCCCC--------------
Confidence 2344568999999999998889999999999999999999999997532211 11111111000
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
........++.++.+++.+||+.||++|||+.|+++
T Consensus 222 --~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 222 --FDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp --CCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred --CChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 000111235667899999999999999999999987
No 45
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=2.3e-41 Score=354.21 Aligned_cols=252 Identities=23% Similarity=0.319 Sum_probs=206.7
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCc------hhhhHHHHHHHHHhCCCccceeeeeeeecCCe
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGR------VFKSFDVECEMMKSIRHRNIIKVISSCSNEEF 462 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 462 (678)
..+.|++.+.||+|+||.||+|..+ +|+.||+|++...... ..+.+.+|+.+++.++||||+++++++.+.+.
T Consensus 10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~ 89 (361)
T 2yab_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD 89 (361)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence 3567999999999999999999864 7999999999754321 34678899999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC----cEEEEeecc
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM----VAHLSDFGI 538 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~----~~kl~Dfg~ 538 (678)
.++||||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 90 ~~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~ 165 (361)
T 2yab_A 90 VVLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGL 165 (361)
T ss_dssp EEEEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSS
T ss_pred EEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCC
Confidence 999999999999999997654 5899999999999999999999 89999999999999998776 799999999
Q ss_pred ccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccc
Q 005760 539 AKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKE 618 (678)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (678)
+....... ......||+.|+|||++.+..++.++||||+||++|+|++|..||.+....+ ..........
T Consensus 166 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~-~~~~i~~~~~------ 235 (361)
T 2yab_A 166 AHEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLANITAVSY------ 235 (361)
T ss_dssp CEECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHTTCC------
T ss_pred ceEcCCCC---ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhcCC------
Confidence 98764322 2234579999999999999899999999999999999999999997632211 1111111000
Q ss_pred cccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 619 IVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.........+++++.+++.+||++||++|||+.|+++
T Consensus 236 ----------~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 236 ----------DFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp ----------CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ----------CCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0000111234567889999999999999999999984
No 46
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=364.07 Aligned_cols=260 Identities=24% Similarity=0.386 Sum_probs=210.3
Q ss_pred hcCCCCCccccCCCceeEEEEEeC------CCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG------DGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 463 (678)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ......+.+|+.+++.++||||+++++++.+.+..
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 467889999999999999999842 56789999986432 23445688999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhhhCC------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC---cEEEE
Q 005760 464 ALVLEYMPHGSLEKYLHSSN------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM---VAHLS 534 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~---~~kl~ 534 (678)
++||||+++|+|.+++...+ ..+++..++.++.||+.||+||| +++|+||||||+||+++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEEC
Confidence 99999999999999997643 35889999999999999999999 99999999999999999555 59999
Q ss_pred eeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccC
Q 005760 535 DFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLP 613 (678)
Q Consensus 535 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~ 613 (678)
|||+++...............+|+.|+|||.+.+..++.++|||||||++|||++ |..||...... .....+.....
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~--~~~~~i~~~~~ 304 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVLEFVTSGGR 304 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHTTCC
T ss_pred CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC
Confidence 9999976543333333445668899999999999999999999999999999998 99998753221 11111111000
Q ss_pred CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 614 ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
... +..++.++.+++.+||+.||++||++.|+++.|+.+.+.
T Consensus 305 -----~~~-------------~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 305 -----MDP-------------PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp -----CCC-------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -----CCC-------------CccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 000 012445688999999999999999999999999998753
No 47
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=2.8e-42 Score=360.64 Aligned_cols=265 Identities=26% Similarity=0.416 Sum_probs=213.7
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEeC------CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecC
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARLG------DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNE 460 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 460 (678)
....++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|+.+++.++||||+++++++.+.
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 122 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence 345678999999999999999999863 458899999975432 3456788999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHhhhCC-----------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcC
Q 005760 461 EFKALVLEYMPHGSLEKYLHSSN-----------------------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCD 517 (678)
Q Consensus 461 ~~~~lv~e~~~~~~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~d 517 (678)
+..++||||+++++|.+++.... ..+++..++.++.||+.||.||| +++|+|||
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~D 199 (343)
T 1luf_A 123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRD 199 (343)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence 99999999999999999997642 45889999999999999999999 99999999
Q ss_pred CCCCCeeecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCc
Q 005760 518 LKPSNVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDE 596 (678)
Q Consensus 518 l~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~ 596 (678)
|||+||+++.++.+||+|||++................+++.|+|||.+.+..++.++||||||+++|||++ |..||.+
T Consensus 200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 279 (343)
T 1luf_A 200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 279 (343)
T ss_dssp CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC
Confidence 999999999999999999999987654433333445678899999999988899999999999999999999 9999875
Q ss_pred ccCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 597 IFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
....+ ....+... .. .. .+..++.++.+++.+||+.||++||++.|+++.|+++.+.+.
T Consensus 280 ~~~~~--~~~~~~~~---~~--------~~-------~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 280 MAHEE--VIYYVRDG---NI--------LA-------CPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE 338 (343)
T ss_dssp SCHHH--HHHHHHTT---CC--------CC-------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred CChHH--HHHHHhCC---Cc--------CC-------CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence 32211 11111100 00 00 001245568899999999999999999999999999876553
No 48
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.6e-42 Score=361.54 Aligned_cols=262 Identities=28% Similarity=0.436 Sum_probs=214.5
Q ss_pred hhcCCCCCccccCCCceeEEEEEe--------CCCcEEEEEEeecccC-chhhhHHHHHHHHHhC-CCccceeeeeeeec
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL--------GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSI-RHRNIIKVISSCSN 459 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~--------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~ 459 (678)
..++|.+.+.||+|+||.||+|.. ..+..||+|++..... ...+.+.+|+++++.+ +||||+++++++.+
T Consensus 67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 346888999999999999999974 2346799999975533 3446788999999999 89999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCee
Q 005760 460 EEFKALVLEYMPHGSLEKYLHSSN---------------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVL 524 (678)
Q Consensus 460 ~~~~~lv~e~~~~~~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nil 524 (678)
.+..++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIl 223 (382)
T 3tt0_A 147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVL 223 (382)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEE
T ss_pred CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEE
Confidence 999999999999999999998654 34899999999999999999999 899999999999999
Q ss_pred ecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccc
Q 005760 525 LDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMT 603 (678)
Q Consensus 525 l~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~ 603 (678)
++.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |..||...... .
T Consensus 224 l~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~--~ 301 (382)
T 3tt0_A 224 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE--E 301 (382)
T ss_dssp ECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--H
T ss_pred EcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--H
Confidence 99999999999999987654443344445567889999999999999999999999999999999 99998653221 1
Q ss_pred hhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 604 LKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
....+..... ...+ ..++.++.+++.+||+.||++|||+.|+++.|+++....
T Consensus 302 ~~~~~~~~~~-----~~~~-------------~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 354 (382)
T 3tt0_A 302 LFKLLKEGHR-----MDKP-------------SNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT 354 (382)
T ss_dssp HHHHHHTTCC-----CCCC-------------SSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCC-----CCCC-------------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 1111111000 0000 123456889999999999999999999999999997653
No 49
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.1e-41 Score=347.65 Aligned_cols=260 Identities=25% Similarity=0.411 Sum_probs=206.7
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC---chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG---RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 46799999999999999999985 4789999999865432 3346788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++++|.+++.... .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 165 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS 165 (294)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred EeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence 99999999999998765 4899999999999999999999 9999999999999999999999999999998654322
Q ss_pred CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
........||+.|+|||.+.+..++.++||||+|+++|||++|+.||.+........... ....+.
T Consensus 166 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~-~~~~~~------------ 231 (294)
T 4eqm_A 166 -LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHI-QDSVPN------------ 231 (294)
T ss_dssp ----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHH-SSCCCC------------
T ss_pred -ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHh-hccCCC------------
Confidence 222334568999999999999999999999999999999999999997633221111111 000000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCC-CHHHHHHHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRI-NAKEIVTKLLKIR 671 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-s~~ell~~L~~~~ 671 (678)
........+++.+.+++.+||+.||++|| +++++.+.|+++.
T Consensus 232 ---~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~ 274 (294)
T 4eqm_A 232 ---VTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVL 274 (294)
T ss_dssp ---HHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSS
T ss_pred ---cchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHH
Confidence 00000123456688999999999999999 9999999998764
No 50
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=2.5e-41 Score=350.79 Aligned_cols=248 Identities=23% Similarity=0.323 Sum_probs=204.7
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecc---cCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQ---YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|+.+ +|+.||+|++... .......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 367889999999999999999864 7999999999754 233456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++|+|.+++...+ .+++..+..++.||+.||+||| +++|+||||||+||+++.+|.+||+|||+++......
T Consensus 84 ~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 159 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG 159 (337)
T ss_dssp EECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCC
Confidence 99999999999998654 4899999999999999999999 9999999999999999999999999999997543221
Q ss_pred CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||........ ....... ...-|
T Consensus 160 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~-~~~i~~~-------~~~~p---- 225 (337)
T 1o6l_A 160 --ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL-FELILME-------EIRFP---- 225 (337)
T ss_dssp --CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHC-------CCCCC----
T ss_pred --CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHH-HHHHHcC-------CCCCC----
Confidence 223456799999999999999999999999999999999999999975322111 1111110 00001
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCC-----CHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRI-----NAKEIVT 665 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~ell~ 665 (678)
..+++++.+++.+||+.||++|| +++|+++
T Consensus 226 ---------~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 226 ---------RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp ---------TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred ---------CCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 12345688999999999999999 8999875
No 51
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.1e-42 Score=356.91 Aligned_cols=263 Identities=24% Similarity=0.382 Sum_probs=212.0
Q ss_pred hhcCCCCCccccCCCceeEEEEEe------CCCcEEEEEEeeccc-CchhhhHHHHHHHHHhC-CCccceeeeeeeecCC
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL------GDGMEVAMKVFNLQY-GRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEE 461 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~ 461 (678)
..++|++.+.||+|+||.||+|.. .++..||+|++.... ....+.+.+|+.+++.+ +||||+++++++...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 457899999999999999999985 246789999996542 33457789999999999 8999999999999999
Q ss_pred eEEEEEEecCCCCHHHHhhhCCC----------------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCC
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNY----------------------ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLK 519 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~----------------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~ 519 (678)
..++||||+++|+|.+++..... .+++..+..++.|++.||+||| +++|+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 99999999999999999986543 2788999999999999999999 8999999999
Q ss_pred CCCeeecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCccc
Q 005760 520 PSNVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIF 598 (678)
Q Consensus 520 ~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~ 598 (678)
|+||+++.++.+||+|||++................+|+.|+|||.+.++.++.++|||||||++|||++ |..||....
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 279 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 279 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence 9999999999999999999987654443344455667889999999988899999999999999999998 999997643
Q ss_pred CCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 599 NGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
.... ....+..... ...+ ..+++++.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus 280 ~~~~-~~~~~~~~~~-----~~~~-------------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~ 336 (344)
T 1rjb_A 280 VDAN-FYKLIQNGFK-----MDQP-------------FYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADA 336 (344)
T ss_dssp CSHH-HHHHHHTTCC-----CCCC-------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred cHHH-HHHHHhcCCC-----CCCC-------------CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHH
Confidence 3221 1111111000 0000 123456889999999999999999999999999987654
No 52
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=4.6e-42 Score=356.22 Aligned_cols=259 Identities=24% Similarity=0.396 Sum_probs=204.3
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcE----EEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGME----VAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
.++|++.+.||+|+||.||+|.+. +++. ||+|.+.... ....+.+.+|+.+++.++||||+++++++.+.+ .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 457889999999999999999853 4444 5788775432 244577899999999999999999999998765 77
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+|+||+++|+|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++....
T Consensus 93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~ 169 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTT
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEccC
Confidence 999999999999999887777999999999999999999999 89999999999999999999999999999987765
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
...........+|+.|+|||.+.+..++.++|||||||++|||++ |+.||....... ....+..... ...
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--~~~~~~~~~~-----~~~-- 240 (327)
T 3poz_A 170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISSILEKGER-----LPQ-- 240 (327)
T ss_dssp TCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHTTCC-----CCC--
T ss_pred CcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHH--HHHHHHcCCC-----CCC--
Confidence 444444445567889999999999999999999999999999999 999997643322 1111111000 000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
+..++.++.+++.+||+.||++||++.|+++.|+.+...
T Consensus 241 -----------~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 241 -----------PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp -----------CTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred -----------CccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 012345688999999999999999999999999988643
No 53
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=2.2e-41 Score=366.19 Aligned_cols=253 Identities=29% Similarity=0.446 Sum_probs=208.4
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCC-eEEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE-FKALVLE 468 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~lv~e 468 (678)
..++|++.+.||+|+||.||+|... ++.||||+++... ..+.+.+|+++++.++||||+++++++.+.+ ..++|||
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e 267 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 267 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEE
Confidence 3467888999999999999999984 7899999997543 4578999999999999999999999986654 7899999
Q ss_pred ecCCCCHHHHhhhCCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 469 YMPHGSLEKYLHSSNY-ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
|+++|+|.++++..+. .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.....
T Consensus 268 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-- 342 (450)
T 1k9a_A 268 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-- 342 (450)
T ss_dssp CCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred ecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc--
Confidence 9999999999987644 3689999999999999999999 999999999999999999999999999999754321
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
.....++..|+|||.+.+..++.++|||||||++|||++ |+.||......+. ...+.... ...
T Consensus 343 ---~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~--~~~i~~~~-----~~~------ 406 (450)
T 1k9a_A 343 ---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV--VPRVEKGY-----KMD------ 406 (450)
T ss_dssp -------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH--HHHHHTTC-----CCC------
T ss_pred ---ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH--HHHHHcCC-----CCC------
Confidence 122357889999999999999999999999999999998 9999976433221 11111000 000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
.+..+++++.++|.+||+.||++|||+.|+++.|+++...
T Consensus 407 -------~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 407 -------APDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp -------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred -------CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 0123566799999999999999999999999999998764
No 54
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=9.4e-41 Score=341.82 Aligned_cols=264 Identities=15% Similarity=0.128 Sum_probs=215.6
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e 468 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++... ...+.+.+|+.+++.+ +|+|++++++++.+....++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR--SDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC--TTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccC--CccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 46799999999999999999985 58999999998643 2346788999999999 79999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc-----EEEEeeccccccC
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV-----AHLSDFGIAKLLT 543 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~-----~kl~Dfg~~~~~~ 543 (678)
|+ +++|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++. +||+|||++....
T Consensus 87 ~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~ 162 (298)
T 1csn_A 87 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 162 (298)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred ec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccc
Confidence 99 99999999877667999999999999999999999 999999999999999987776 9999999998765
Q ss_pred CCCCc-----ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccc--hhhhhhcccCCcc
Q 005760 544 REDQS-----TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT--LKHWVNDWLPIST 616 (678)
Q Consensus 544 ~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~--~~~~~~~~~~~~~ 616 (678)
..... .......||+.|+|||.+.+..++.++||||||+++|||++|+.||......... .............
T Consensus 163 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 1csn_A 163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL 242 (298)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCH
T ss_pred cccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccH
Confidence 43221 1234567999999999999999999999999999999999999999764332111 0100000000000
Q ss_pred cccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 617 KEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
......+++++.+++.+||+.||++||+++++++.|+++.+++.
T Consensus 243 ---------------~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~ 286 (298)
T 1csn_A 243 ---------------RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLN 286 (298)
T ss_dssp ---------------HHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred ---------------HHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcC
Confidence 00001356779999999999999999999999999999987654
No 55
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.1e-41 Score=351.52 Aligned_cols=261 Identities=23% Similarity=0.389 Sum_probs=213.9
Q ss_pred hhcCCCCCccccCCCceeEEEEEe------CCCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCe
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL------GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEF 462 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 462 (678)
..++|.+.+.||+|+||.||+|.. .+++.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 356788999999999999999974 3458899999975432 345678899999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHhhhCCC-----------------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCC
Q 005760 463 KALVLEYMPHGSLEKYLHSSNY-----------------------ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLK 519 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~-----------------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~ 519 (678)
.++||||+++++|.+++..... .+++..++.++.|++.||+||| +++|+|||||
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dik 177 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLA 177 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccc
Confidence 9999999999999999986432 3788999999999999999999 8999999999
Q ss_pred CCCeeecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCccc
Q 005760 520 PSNVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIF 598 (678)
Q Consensus 520 ~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~ 598 (678)
|+||+++.++.+||+|||++................+++.|+|||.+.+..++.++||||+|+++|||++ |..||....
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 257 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP 257 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999987654443333445567889999999988889999999999999999999 999987643
Q ss_pred CCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 599 NGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
... ....+..... +.. +..+++++.+++.+||+.||++||++.|+++.|+++.+.
T Consensus 258 ~~~--~~~~~~~~~~--------~~~----------~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 258 PER--LFNLLKTGHR--------MER----------PDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp GGG--HHHHHHTTCC--------CCC----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHH--HHHHhhcCCc--------CCC----------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 321 1111111000 000 012456688999999999999999999999999998653
No 56
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=2.5e-41 Score=344.40 Aligned_cols=261 Identities=26% Similarity=0.428 Sum_probs=197.0
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
..++|++.+.||+|+||.||+|.... .||+|++..... ...+.+.+|+++++.++||||+++++++. .+..++||
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~ 98 (289)
T 3og7_A 22 PDGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVT 98 (289)
T ss_dssp CTTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred CccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc-CCccEEEE
Confidence 45789999999999999999998643 599999865432 34567889999999999999999999654 45678999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+++++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 99 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 99 QWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred EecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceeccccccccc
Confidence 999999999999877777999999999999999999999 89999999999999999999999999999976543333
Q ss_pred cceeecccCCccccCccccC---CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 548 STIQTQTLATIGYMAPEYGK---EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
........||+.|+|||.+. +..++.++||||+|+++|||++|+.||......+..................
T Consensus 176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----- 250 (289)
T 3og7_A 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKV----- 250 (289)
T ss_dssp --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSS-----
T ss_pred cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhc-----
Confidence 33344567899999999886 5668889999999999999999999997643322111111111111000000
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIR 671 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~ 671 (678)
...+++++.+++.+||+.||++|||+.|+++.|+++.
T Consensus 251 ----------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 251 ----------RSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp ----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred ----------cccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 0134566899999999999999999999999999874
No 57
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=3.8e-41 Score=342.74 Aligned_cols=253 Identities=28% Similarity=0.461 Sum_probs=205.7
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCc-------hhhhHHHHHHHHHhCCCccceeeeeeeecCCe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGR-------VFKSFDVECEMMKSIRHRNIIKVISSCSNEEF 462 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~-------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 462 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++...... ..+.+.+|+++++.++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 46899999999999999999985 58999999998654321 1267889999999999999999999997765
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEcCCCCCCeeecCCCc-----EEEEe
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQ--VIHCDLKPSNVLLDDNMV-----AHLSD 535 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dl~~~Nill~~~~~-----~kl~D 535 (678)
++||||+++++|.+++......+++..+..++.|++.|++||| +++ |+||||||+||+++.++. +||+|
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D 172 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVAD 172 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred -eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence 6999999999999999877777999999999999999999999 888 999999999999988776 99999
Q ss_pred eccccccCCCCCcceeecccCCccccCccccC--CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC
Q 005760 536 FGIAKLLTREDQSTIQTQTLATIGYMAPEYGK--EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP 613 (678)
Q Consensus 536 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~--~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~ 613 (678)
||+++.... ......+|+.|+|||.+. ...++.++||||+||++|||++|+.||...................
T Consensus 173 fg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 247 (287)
T 4f0f_A 173 FGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGL 247 (287)
T ss_dssp CTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCC
T ss_pred CCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCC
Confidence 999975422 234567999999999984 4557899999999999999999999997644433322222111000
Q ss_pred CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHH
Q 005760 614 ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKI 670 (678)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~ 670 (678)
.+.. +..+++++.+++.+||+.||++|||+.|+++.|+++
T Consensus 248 -------~~~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 248 -------RPTI----------PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp -------CCCC----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred -------CCCC----------CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 0000 012456688999999999999999999999999863
No 58
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1.2e-41 Score=345.43 Aligned_cols=262 Identities=23% Similarity=0.365 Sum_probs=201.7
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC----CCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG----DGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
..++|++.+.||+|+||.||+|... .+..||+|++.... ....+.+.+|+.+++.++||||+++++++.+ +..+
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~ 91 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NPVW 91 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-SSCE
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEcc-CccE
Confidence 3568889999999999999999753 35679999986532 2345678899999999999999999999854 5678
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+||||+++++|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++.....
T Consensus 92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 168 (281)
T 1mp8_A 92 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168 (281)
T ss_dssp EEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred EEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCc
Confidence 999999999999999877667999999999999999999999 89999999999999999999999999999987643
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
.. ........+++.|+|||.+.+..++.++||||+|+++|||++ |..||......+ ....+..... +.
T Consensus 169 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~--~~~~i~~~~~--------~~ 237 (281)
T 1mp8_A 169 ST-YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIGRIENGER--------LP 237 (281)
T ss_dssp -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHTTCC--------CC
T ss_pred cc-ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH--HHHHHHcCCC--------CC
Confidence 22 222334456789999999988899999999999999999997 899987643221 1111110000 00
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHhh
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLLR 676 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~~ 676 (678)
.+..+++++.+++.+||+.||++|||+.|+++.|+++.++-.+
T Consensus 238 ----------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 280 (281)
T 1mp8_A 238 ----------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKA 280 (281)
T ss_dssp ----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhcc
Confidence 0012456688999999999999999999999999999877554
No 59
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.1e-41 Score=352.97 Aligned_cols=261 Identities=25% Similarity=0.440 Sum_probs=195.6
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCC-C---cEEEEEEeecc--cCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGD-G---MEVAMKVFNLQ--YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFK 463 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~-~---~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 463 (678)
..++|++.+.||+|+||.||+|.... + ..||+|++... .....+.+.+|+++++.++||||+++++++...+..
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 45689999999999999999998643 3 27999998654 334567889999999999999999999999776654
Q ss_pred ------EEEEEecCCCCHHHHhhhCC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEE
Q 005760 464 ------ALVLEYMPHGSLEKYLHSSN-----YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAH 532 (678)
Q Consensus 464 ------~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~k 532 (678)
++||||+++++|.+++.... ..+++..++.++.|++.||+||| +++|+||||||+||+++.++.+|
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~k 177 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVC 177 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEE
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEE
Confidence 89999999999999986432 25889999999999999999999 89999999999999999999999
Q ss_pred EEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcc
Q 005760 533 LSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDW 611 (678)
Q Consensus 533 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~ 611 (678)
|+|||+++...............+++.|+|||.+.+..++.++||||+||++|||++ |..||.+....+. ........
T Consensus 178 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~-~~~~~~~~ 256 (323)
T 3qup_A 178 VADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEI-YNYLIGGN 256 (323)
T ss_dssp ECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-HHHHHTTC
T ss_pred EeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHH-HHHHhcCC
Confidence 999999987654443334445567889999999999999999999999999999999 8999876433221 11111100
Q ss_pred cCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 612 LPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
.. .. +..++.++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 257 ~~------~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 257 RL------KQ-------------PPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp CC------CC-------------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CC------CC-------------CCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 00 00 012345688999999999999999999999999998753
No 60
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1.5e-41 Score=357.76 Aligned_cols=271 Identities=15% Similarity=0.196 Sum_probs=208.7
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCC------CcEEEEEEeecccCc-----------hhhhHHHHHHHHHhCCCcccee
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGD------GMEVAMKVFNLQYGR-----------VFKSFDVECEMMKSIRHRNIIK 452 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~------~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv~ 452 (678)
..++|++.+.||+|+||.||+|.+.. ++.||||++...... ....+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 35689999999999999999998654 478999998654321 1122344566677788999999
Q ss_pred eeeeeecC----CeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec--
Q 005760 453 VISSCSNE----EFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD-- 526 (678)
Q Consensus 453 ~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~-- 526 (678)
+++++... ...++||||+ +++|.+++......+++..+..++.||+.||+||| +++|+||||||+||+++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~ 188 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYK 188 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESS
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecC
Confidence 99998664 4589999999 99999999887667999999999999999999999 89999999999999999
Q ss_pred CCCcEEEEeeccccccCCCCCcc-----eeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCc
Q 005760 527 DNMVAHLSDFGIAKLLTREDQST-----IQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGE 601 (678)
Q Consensus 527 ~~~~~kl~Dfg~~~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~ 601 (678)
.++.+||+|||+++.+....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.....
T Consensus 189 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~ 268 (364)
T 3op5_A 189 NPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDP 268 (364)
T ss_dssp CTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH
T ss_pred CCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCH
Confidence 89999999999998765332111 1234459999999999999999999999999999999999999998643332
Q ss_pred cchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 602 MTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
... .............+.++.+. ...++.++.+++..||+.||++||++.++++.|+++.+..
T Consensus 269 ~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~ 331 (364)
T 3op5_A 269 KYV-RDSKIRYRENIASLMDKCFP---------AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAI 331 (364)
T ss_dssp HHH-HHHHHHHHHCHHHHHHHHSC---------TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHhhhhHHHHHHHhcc---------cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHc
Confidence 111 11111111111111111110 0134677999999999999999999999999999998764
No 61
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=1.5e-40 Score=345.51 Aligned_cols=262 Identities=20% Similarity=0.206 Sum_probs=213.0
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e 468 (678)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ..+.+..|+++++.+ +||||+++++++.+.+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 46799999999999999999985 589999999987543 346788999999999 89999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc-----EEEEeeccccccC
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV-----AHLSDFGIAKLLT 543 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~-----~kl~Dfg~~~~~~ 543 (678)
|+ +++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++...
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~ 161 (330)
T 2izr_A 86 LL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYI 161 (330)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESB
T ss_pred eC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeee
Confidence 99 89999999876667999999999999999999999 899999999999999998887 9999999998764
Q ss_pred CCCCcc-----eeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccc--hhhhhhcccCCcc
Q 005760 544 REDQST-----IQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT--LKHWVNDWLPIST 616 (678)
Q Consensus 544 ~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~--~~~~~~~~~~~~~ 616 (678)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+....... .........+..
T Consensus 162 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~- 240 (330)
T 2izr_A 162 DPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATP- 240 (330)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSC-
T ss_pred cCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCC-
Confidence 332211 124567999999999999999999999999999999999999999764322111 011000000000
Q ss_pred cccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 617 KEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
.. .....++ ++.+++.+||+.||.+||++.++++.|+++.+..
T Consensus 241 -------------~~-~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~ 283 (330)
T 2izr_A 241 -------------IE-VLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK 283 (330)
T ss_dssp -------------HH-HHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred -------------HH-HHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 00 0001134 7999999999999999999999999999887764
No 62
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-40 Score=345.27 Aligned_cols=272 Identities=26% Similarity=0.379 Sum_probs=207.7
Q ss_pred HHHHHhhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhC--CCccceeeeeeeecC--
Q 005760 385 LELCRATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSI--RHRNIIKVISSCSNE-- 460 (678)
Q Consensus 385 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~~~~~~~~~-- 460 (678)
.......++|++.+.||+|+||.||+|+.. ++.||||++... ....+..|.+++... +||||+++++++...
T Consensus 30 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~ 105 (337)
T 3mdy_A 30 LVQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTG 105 (337)
T ss_dssp HHHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCG
T ss_pred ccccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCC
Confidence 333445678999999999999999999885 899999998643 224455566666654 899999999998776
Q ss_pred --CeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC--------CeEEcCCCCCCeeecCCCc
Q 005760 461 --EFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSA--------QVIHCDLKPSNVLLDDNMV 530 (678)
Q Consensus 461 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~--------~ivH~dl~~~Nill~~~~~ 530 (678)
...++||||+++|+|.++++... +++..++.++.|++.||+||| ++ +|+||||||+||+++.++.
T Consensus 106 ~~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH~Dikp~Nill~~~~~ 180 (337)
T 3mdy_A 106 SWTQLYLITDYHENGSLYDYLKSTT--LDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAHRDLKSKNILVKKNGT 180 (337)
T ss_dssp GGCEEEEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEECSCCCGGGEEECTTSC
T ss_pred CCCceEEEEeccCCCcHHHHhhccC--CCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEecccchHHEEECCCCC
Confidence 68899999999999999997653 899999999999999999999 77 9999999999999999999
Q ss_pred EEEEeeccccccCCCCCc--ceeecccCCccccCccccCCCCCCcc------chHHHHHHHHHHHHcC----------CC
Q 005760 531 AHLSDFGIAKLLTREDQS--TIQTQTLATIGYMAPEYGKEGRVSAN------GDVYSFGIMLMETFTR----------KK 592 (678)
Q Consensus 531 ~kl~Dfg~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~------~DvwslGv~l~ell~g----------~~ 592 (678)
+||+|||++......... .......||+.|+|||.+.+...+.+ +|||||||++|||++| +.
T Consensus 181 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~ 260 (337)
T 3mdy_A 181 CCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQL 260 (337)
T ss_dssp EEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCC
T ss_pred EEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccc
Confidence 999999999766433221 11234579999999999887766655 9999999999999999 55
Q ss_pred CCCcccCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHH
Q 005760 593 PTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRD 672 (678)
Q Consensus 593 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~ 672 (678)
||.................... ..............+++++.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 261 p~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~ 331 (337)
T 3mdy_A 261 PYHDLVPSDPSYEDMREIVCIK---------KLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSE 331 (337)
T ss_dssp TTTTTSCSSCCHHHHHHHHTTS---------CCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cHhhhcCCCCchhhhHHHHhhh---------ccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHh
Confidence 5544333322222211111000 0001111111223678889999999999999999999999999999987
Q ss_pred HH
Q 005760 673 SL 674 (678)
Q Consensus 673 ~~ 674 (678)
+.
T Consensus 332 ~~ 333 (337)
T 3mdy_A 332 SQ 333 (337)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 63
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.9e-41 Score=346.15 Aligned_cols=251 Identities=22% Similarity=0.318 Sum_probs=205.5
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCc------hhhhHHHHHHHHHhCCCccceeeeeeeecCCeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGR------VFKSFDVECEMMKSIRHRNIIKVISSCSNEEFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 463 (678)
.+.|++.+.||+|+||.||+|... +|+.||+|++...... ..+.+.+|+.+++.++||||+++++++.+.+..
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 456889999999999999999864 7899999999754321 356788999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC----cEEEEeeccc
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM----VAHLSDFGIA 539 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~----~~kl~Dfg~~ 539 (678)
++||||+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++ .+||+|||++
T Consensus 90 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a 165 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLA 165 (326)
T ss_dssp EEEEECCCSCBHHHHHTTSS-CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCCHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCC
Confidence 99999999999999997654 5899999999999999999999 99999999999999999877 8999999999
Q ss_pred cccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccccc
Q 005760 540 KLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEI 619 (678)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (678)
....... ......||+.|+|||++.+..++.++||||+||++|+|++|..||.+....+ ..........
T Consensus 166 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~~~~~~~------- 234 (326)
T 2y0a_A 166 HKIDFGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLANVSAVNY------- 234 (326)
T ss_dssp EECCTTS---CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHHTCC-------
T ss_pred eECCCCC---ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHHHhcCC-------
Confidence 8764322 2234579999999999998899999999999999999999999996532211 1111100000
Q ss_pred ccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 620 VDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. ........++.++.+++.+||+.||++|||+.|+++
T Consensus 235 ---~------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 235 ---E------FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp ---C------CCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ---C------cCccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0 000111234567889999999999999999999986
No 64
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.3e-41 Score=364.12 Aligned_cols=261 Identities=20% Similarity=0.255 Sum_probs=209.4
Q ss_pred HHHHHhhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecc---cCchhhhHHHHHHHHHhCCCccceeeeeeeecC
Q 005760 385 LELCRATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQ---YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNE 460 (678)
Q Consensus 385 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 460 (678)
.++....++|++.+.||+|+||.||+|+.+ +++.||+|++... .......+.+|..+++.++||||+++++++.+.
T Consensus 67 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~ 146 (437)
T 4aw2_A 67 KQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDD 146 (437)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECS
T ss_pred hcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC
Confidence 344455789999999999999999999865 6889999999753 223345688999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccc
Q 005760 461 EFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAK 540 (678)
Q Consensus 461 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~ 540 (678)
+..|+||||+++|+|.+++......+++..+..++.|++.||+||| +++|+||||||+|||++.++.+||+|||+++
T Consensus 147 ~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla~ 223 (437)
T 4aw2_A 147 NNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCL 223 (437)
T ss_dssp SEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred CEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhhh
Confidence 9999999999999999999876567999999999999999999999 9999999999999999999999999999997
Q ss_pred ccCCCCCcceeecccCCccccCccccC-----CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCc
Q 005760 541 LLTREDQSTIQTQTLATIGYMAPEYGK-----EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPIS 615 (678)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~ 615 (678)
...... ........||+.|+|||++. .+.++.++||||+||++|||++|+.||.+....+. .........
T Consensus 224 ~~~~~~-~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~-~~~i~~~~~--- 298 (437)
T 4aw2_A 224 KLMEDG-TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET-YGKIMNHKE--- 298 (437)
T ss_dssp ECCTTS-CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHTHHH---
T ss_pred hcccCC-CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHH-HHhhhhccc---
Confidence 664332 22334467999999999986 56789999999999999999999999976332211 111111000
Q ss_pred ccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCC--CCCHHHHHH
Q 005760 616 TKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQ--RINAKEIVT 665 (678)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rps~~ell~ 665 (678)
....|... ...++++.+++.+||..+|++ ||+++|+++
T Consensus 299 --~~~~p~~~----------~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 299 --RFQFPTQV----------TDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp --HCCCCSSC----------CCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred --cccCCccc----------ccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 00001100 013456889999999998888 999999875
No 65
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-41 Score=349.91 Aligned_cols=246 Identities=26% Similarity=0.381 Sum_probs=202.5
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|.+.+.||+|+||.||+|.. .+++.||+|++.... ......+.+|+.+++.++||||+++++++.+++..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 46899999999999999999985 589999999996532 23346788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+ +|+|.+++.... .+++..+..++.|++.|+.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 88 ~E~~-~g~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~ 162 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKK-RMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN 162 (336)
T ss_dssp ECCC-CEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB
T ss_pred EECC-CCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCc
Confidence 9999 779999887655 4899999999999999999999 8999999999999999999999999999998654322
Q ss_pred CcceeecccCCccccCccccCCCCC-CccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRV-SANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
......||+.|+|||++.+..+ +.++||||+||++|+|++|+.||.+....... . .+.... .
T Consensus 163 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~--~-----------~i~~~~-~ 225 (336)
T 3h4j_B 163 ---FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLF--K-----------KVNSCV-Y 225 (336)
T ss_dssp ---TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCB--C-----------CCCSSC-C
T ss_pred ---ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHH--H-----------HHHcCC-C
Confidence 2234579999999999988776 78999999999999999999999763322110 0 000000 0
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. .+...++++.+++.+||+.||.+|||++|+++
T Consensus 226 ~-------~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 226 V-------MPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp C-------CCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred C-------CcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 0 00123456889999999999999999999975
No 66
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=344.95 Aligned_cols=274 Identities=20% Similarity=0.279 Sum_probs=210.1
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCC--eEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE--FKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~--~~~lv 466 (678)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+++++.++||||+++++++...+ ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 457899999999999999999865 68999999997543 234567789999999999999999999987655 78999
Q ss_pred EEecCCCCHHHHhhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee----cCCCcEEEEeecccc
Q 005760 467 LEYMPHGSLEKYLHSSNY--ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL----DDNMVAHLSDFGIAK 540 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill----~~~~~~kl~Dfg~~~ 540 (678)
|||+++++|.+++..... .+++..++.++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~ 164 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence 999999999999976443 3899999999999999999999 9999999999999999 788889999999998
Q ss_pred ccCCCCCcceeecccCCccccCccccC--------CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccch---hhhhh
Q 005760 541 LLTREDQSTIQTQTLATIGYMAPEYGK--------EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTL---KHWVN 609 (678)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~y~aPE~~~--------~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~---~~~~~ 609 (678)
...... ......+|+.|+|||++. +..++.++|||||||++|||++|+.||.......... .....
T Consensus 165 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~ 241 (319)
T 4euu_A 165 ELEDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT 241 (319)
T ss_dssp ECCTTC---CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHH
T ss_pred ecCCCC---ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhc
Confidence 764332 223456999999999875 5678999999999999999999999997533322211 11111
Q ss_pred cccCCcccccccCcc-----CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHH
Q 005760 610 DWLPISTKEIVDPNL-----LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKI 670 (678)
Q Consensus 610 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~ 670 (678)
..++.....+..... ..............+..+.+++.+||+.||++|||++|+++..++.
T Consensus 242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp HCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred CCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 111111111100000 0000000011245677799999999999999999999999987753
No 67
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.1e-41 Score=342.87 Aligned_cols=258 Identities=28% Similarity=0.438 Sum_probs=213.2
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEec
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEYM 470 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 470 (678)
.++|++.+.||+|+||.||+|...+++.||+|++..... ..+.+.+|+++++.++||||+++++++.+.+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 357888999999999999999988889999999975433 3467899999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcce
Q 005760 471 PHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQSTI 550 (678)
Q Consensus 471 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~ 550 (678)
++++|.+++......+++..+..++.|++.|++||| +++++||||||+||+++.++.+||+|||++...... ....
T Consensus 86 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~-~~~~ 161 (267)
T 3t9t_A 86 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD-QYTS 161 (267)
T ss_dssp TTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH-HHHS
T ss_pred CCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEcccccccccccc-cccc
Confidence 999999999887667899999999999999999999 999999999999999999999999999999765422 1122
Q ss_pred eecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCccc
Q 005760 551 QTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSRED 629 (678)
Q Consensus 551 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (678)
.....++..|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+.... ....+
T Consensus 162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~i~~~~-----~~~~~------- 227 (267)
T 3t9t_A 162 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--VVEDISTGF-----RLYKP------- 227 (267)
T ss_dssp TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTTC-----CCCCC-------
T ss_pred cccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH--HHHHHhcCC-----cCCCC-------
Confidence 234457788999999988889999999999999999999 899986532211 111111000 00001
Q ss_pred hhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 630 INFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 630 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
..++.++.+++.+||+.||++||++.|+++.|+++.++
T Consensus 228 ------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 228 ------RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp ------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ------ccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 11345588999999999999999999999999999763
No 68
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=7e-41 Score=347.06 Aligned_cols=258 Identities=24% Similarity=0.403 Sum_probs=206.0
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcE----EEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGME----VAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
.++|++.+.||+|+||.||+|... +++. ||+|.+.... ......+.+|+.+++.++||||+++++++.+ +..+
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~ 90 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG-SSLQ 90 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB-SSEE
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-CccE
Confidence 357889999999999999999853 4554 7777775432 3344677889999999999999999999864 5688
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+||||+++|+|.+++...+..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 91 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 167 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPP 167 (325)
T ss_dssp EEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCC
T ss_pred EEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccCc
Confidence 999999999999999876666889999999999999999999 89999999999999999999999999999988765
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
...........++..|+|||.+.++.++.++||||+||++|||++ |..||......+. ...+.... ....+.
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~--~~~~~~~~-----~~~~~~ 240 (325)
T 3kex_A 168 DDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEV--PDLLEKGE-----RLAQPQ 240 (325)
T ss_dssp CTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHH--HHHHHTTC-----BCCCCT
T ss_pred ccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHH--HHHHHcCC-----CCCCCC
Confidence 544444556678889999999998999999999999999999999 9999976433221 11111100 000111
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRD 672 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~ 672 (678)
.++.++.+++.+||+.||++||++.|+++.|+.+..
T Consensus 241 -------------~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~ 276 (325)
T 3kex_A 241 -------------ICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR 276 (325)
T ss_dssp -------------TBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred -------------cCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 123347789999999999999999999999998854
No 69
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=9.7e-41 Score=340.65 Aligned_cols=268 Identities=24% Similarity=0.285 Sum_probs=203.3
Q ss_pred cCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
++|++.+.||+|+||+||+|... +++.||+|++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57889999999999999999864 789999999975432 334678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
|+++ ++.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++..... .
T Consensus 82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~--~ 155 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIP--V 155 (292)
T ss_dssp CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSC--C
T ss_pred cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCc--c
Confidence 9975 777777665567999999999999999999999 899999999999999999999999999999876432 2
Q ss_pred ceeecccCCccccCccccCCCC-CCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC---Cccc---cccc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGR-VSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP---ISTK---EIVD 621 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~-~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~ 621 (678)
.......+|+.|+|||++.+.. ++.++||||+||++|||++|+.||................... .... ...+
T Consensus 156 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 235 (292)
T 3o0g_A 156 RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPD 235 (292)
T ss_dssp SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTT
T ss_pred ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccccc
Confidence 2234567899999999987766 7999999999999999999988864322222122221111000 0000 0000
Q ss_pred Cc---cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 622 PN---LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 622 ~~---~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.. ...............+.++.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 236 YKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 00 000000000001134566889999999999999999999986
No 70
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=3e-41 Score=343.63 Aligned_cols=267 Identities=22% Similarity=0.314 Sum_probs=201.9
Q ss_pred cCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 392 DGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
++|++.+.||+|+||.||+|...+|+.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 57889999999999999999988899999999865432 2346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcc
Q 005760 470 MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQST 549 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~ 549 (678)
+++ +|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++...... ..
T Consensus 82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~ 155 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP--VR 155 (288)
T ss_dssp CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcc--cc
Confidence 976 999999876667899999999999999999999 899999999999999999999999999999765422 12
Q ss_pred eeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc---CCccc-----ccc
Q 005760 550 IQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL---PISTK-----EIV 620 (678)
Q Consensus 550 ~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~ 620 (678)
......+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+....+. ......... ..... ...
T Consensus 156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (288)
T 1ob3_A 156 KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQ-LMRIFRILGTPNSKNWPNVTELPKY 234 (288)
T ss_dssp ------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHHCCCChhhchhhhccccc
Confidence 22345689999999988764 589999999999999999999999976332211 111111000 00000 000
Q ss_pred cCccCCccchhh-HHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 621 DPNLLSREDINF-VAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 621 ~~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
++.......... ......++++.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 111000000000 000124566889999999999999999999975
No 71
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=3.2e-41 Score=353.09 Aligned_cols=252 Identities=21% Similarity=0.307 Sum_probs=204.1
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc-----CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY-----GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 45799999999999999999985 479999999986432 123567899999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc---EEEEeecc
Q 005760 465 LVLEYMPHGSLEKYLHSS---NYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV---AHLSDFGI 538 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~---~kl~Dfg~ 538 (678)
+||||+++++|.+++... ...+++..+..++.||+.||+||| +++|+||||||+||+++.++. +||+|||+
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~ 179 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGV 179 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcc
Confidence 999999999999887543 235889999999999999999999 999999999999999986554 99999999
Q ss_pred ccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccc
Q 005760 539 AKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKE 618 (678)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (678)
+....... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+... ............
T Consensus 180 a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~i~~~~~~----- 250 (351)
T 3c0i_A 180 AIQLGESG--LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE--RLFEGIIKGKYK----- 250 (351)
T ss_dssp CEECCTTS--CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH--HHHHHHHHTCCC-----
T ss_pred eeEecCCC--eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH--HHHHHHHcCCCC-----
Confidence 98765322 223456799999999999998999999999999999999999999976321 111111111000
Q ss_pred cccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 619 IVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
........++.++.+++.+||+.||++|||+.|+++
T Consensus 251 -----------~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 251 -----------MNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp -----------CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred -----------CCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000111234567899999999999999999999985
No 72
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=7.9e-42 Score=370.30 Aligned_cols=257 Identities=25% Similarity=0.437 Sum_probs=210.7
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
..++|++.+.||+|+||.||+|..+++..||||+++... ...+.+.+|+++++.++||||+++++++. .+..++||||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~ 263 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEF 263 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEee
Confidence 456788899999999999999999888999999997543 34678999999999999999999999987 5678999999
Q ss_pred cCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 470 MPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 470 ~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
+++|+|.++++... ..+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+++...... .
T Consensus 264 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~-~ 339 (454)
T 1qcf_A 264 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-Y 339 (454)
T ss_dssp CTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-H
T ss_pred cCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-e
Confidence 99999999997542 25788999999999999999999 8999999999999999999999999999998764321 1
Q ss_pred ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.......++..|+|||++..+.++.++|||||||++|||++ |+.||.+....+ ....+.... ...
T Consensus 340 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~~-----~~~------- 405 (454)
T 1qcf_A 340 TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE--VIRALERGY-----RMP------- 405 (454)
T ss_dssp HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--HHHHHHHTC-----CCC-------
T ss_pred eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC-----CCC-------
Confidence 12234456788999999998899999999999999999999 999997633221 111111100 000
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRD 672 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~ 672 (678)
.+..+++++.+++.+||+.||++|||+.++++.|+++..
T Consensus 406 ------~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~ 444 (454)
T 1qcf_A 406 ------RPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYT 444 (454)
T ss_dssp ------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred ------CCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHh
Confidence 012356678999999999999999999999999998743
No 73
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.3e-40 Score=351.57 Aligned_cols=252 Identities=20% Similarity=0.309 Sum_probs=207.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
.++|++.+.||+|+||.||+|... +|+.||+|++..........+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 467999999999999999999854 7899999999765544556788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec--CCCcEEEEeeccccccCCCCC
Q 005760 470 MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD--DNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~--~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
+++|+|.+++......+++..+..++.||+.||+||| +++|+||||||+||+++ .++.+||+|||+++......
T Consensus 130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~- 205 (387)
T 1kob_A 130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE- 205 (387)
T ss_dssp CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS-
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCCc-
Confidence 9999999999876667899999999999999999999 99999999999999997 45789999999998764332
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
......+|+.|+|||++.+..++.++||||+||++|||++|..||.+....+ ........... .++...
T Consensus 206 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~-~~~~i~~~~~~------~~~~~~-- 274 (387)
T 1kob_A 206 --IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE-TLQNVKRCDWE------FDEDAF-- 274 (387)
T ss_dssp --CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHHCCCC------CCSSTT--
T ss_pred --ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCC------CCcccc--
Confidence 2234569999999999999999999999999999999999999997532211 11111110000 000000
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..+++++.+++.+||+.||++|||+.|+++
T Consensus 275 --------~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 275 --------SSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp --------TTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred --------ccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 123456889999999999999999999986
No 74
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=5.2e-41 Score=354.60 Aligned_cols=249 Identities=23% Similarity=0.300 Sum_probs=199.0
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~ 464 (678)
..++|++.+.||+|+||.||+|+.+ +++.||+|+++... ....+.+..|..+++.+ +||||+++++++.+.+..+
T Consensus 50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 129 (396)
T 4dc2_A 50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF 129 (396)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEE
Confidence 3468999999999999999999854 68899999997542 23445678899999876 8999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+||||+++|+|.+++...+ .+++..+..++.||+.||+||| +++|+||||||+||+++.+|.+||+|||+++....
T Consensus 130 lV~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 205 (396)
T 4dc2_A 130 FVIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 205 (396)
T ss_dssp EEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEEcCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence 9999999999999998765 4899999999999999999999 99999999999999999999999999999975322
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccc---hhh-hhhcccCCcccccc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT---LKH-WVNDWLPISTKEIV 620 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~---~~~-~~~~~~~~~~~~~~ 620 (678)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||......+.. ... ........ ...
T Consensus 206 ~--~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~---~~~ 280 (396)
T 4dc2_A 206 P--GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK---QIR 280 (396)
T ss_dssp T--TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHC---CCC
T ss_pred C--CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhcc---ccC
Confidence 2 22334567999999999999999999999999999999999999999643221110 000 00000000 000
Q ss_pred cCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCH
Q 005760 621 DPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINA 660 (678)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~ 660 (678)
-| ..++.++.+++.+||+.||++||++
T Consensus 281 ~p-------------~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 281 IP-------------RSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp CC-------------TTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred CC-------------CcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 01 1234568899999999999999986
No 75
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=4.7e-41 Score=349.85 Aligned_cols=262 Identities=27% Similarity=0.439 Sum_probs=212.5
Q ss_pred hhcCCCCCccccCCCceeEEEEEe--------CCCcEEEEEEeecccC-chhhhHHHHHHHHHhC-CCccceeeeeeeec
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL--------GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSI-RHRNIIKVISSCSN 459 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~--------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~ 459 (678)
..++|++.+.||+|+||.||+|.. .++..||+|++..... ...+.+.+|+++++.+ +||||+++++++.+
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 112 (334)
T 2pvf_A 33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 112 (334)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence 457899999999999999999975 3567899999975432 3456788999999999 89999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHhhhCCC---------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCee
Q 005760 460 EEFKALVLEYMPHGSLEKYLHSSNY---------------ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVL 524 (678)
Q Consensus 460 ~~~~~lv~e~~~~~~L~~~l~~~~~---------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nil 524 (678)
.+..++||||+++++|.+++..... .+++..++.++.|++.||+||| +++|+||||||+||+
T Consensus 113 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIl 189 (334)
T 2pvf_A 113 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVL 189 (334)
T ss_dssp SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEE
T ss_pred CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEE
Confidence 9999999999999999999986532 3789999999999999999999 899999999999999
Q ss_pred ecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccc
Q 005760 525 LDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMT 603 (678)
Q Consensus 525 l~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~ 603 (678)
++.++.+||+|||++................+++.|+|||.+.+..++.++||||+|+++|||++ |+.||.+....+
T Consensus 190 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-- 267 (334)
T 2pvf_A 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE-- 267 (334)
T ss_dssp ECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--
T ss_pred EcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHH--
Confidence 99999999999999987654433333444567889999999988889999999999999999999 999986532211
Q ss_pred hhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 604 LKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
....+..... +.. +..++.++.+++.+||+.||++||++.|+++.|+++....
T Consensus 268 ~~~~~~~~~~--------~~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~ 320 (334)
T 2pvf_A 268 LFKLLKEGHR--------MDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 320 (334)
T ss_dssp HHHHHHHTCC--------CCC----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC--------CCC----------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence 1111111000 000 0124456889999999999999999999999999997653
No 76
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=7.1e-41 Score=348.95 Aligned_cols=279 Identities=26% Similarity=0.348 Sum_probs=201.5
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHH--HhCCCccceeeeeee-----ecCCe
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMM--KSIRHRNIIKVISSC-----SNEEF 462 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l--~~l~h~niv~~~~~~-----~~~~~ 462 (678)
..++|++.+.||+|+||.||+|+. +++.||||++.... ...+..|.++. ..++||||+++++.+ .....
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 11 DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred ChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence 357899999999999999999987 68999999997432 23444455554 458999999999754 23346
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC---------CeEEcCCCCCCeeecCCCcEEE
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSA---------QVIHCDLKPSNVLLDDNMVAHL 533 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~---------~ivH~dl~~~Nill~~~~~~kl 533 (678)
.++||||+++|+|.+++.... .++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||
T Consensus 87 ~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL 161 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDGTCVI 161 (336)
T ss_dssp EEEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTSCEEE
T ss_pred EEEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCCcEEE
Confidence 789999999999999997765 588899999999999999999 77 9999999999999999999999
Q ss_pred EeeccccccCCCCC------cceeecccCCccccCccccCC-------CCCCccchHHHHHHHHHHHHcCCCCCCcccCC
Q 005760 534 SDFGIAKLLTREDQ------STIQTQTLATIGYMAPEYGKE-------GRVSANGDVYSFGIMLMETFTRKKPTDEIFNG 600 (678)
Q Consensus 534 ~Dfg~~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~-------~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~ 600 (678)
+|||+++....... ........||+.|+|||++.+ ..++.++|||||||++|||++|..||......
T Consensus 162 ~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~ 241 (336)
T 3g2f_A 162 SDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESV 241 (336)
T ss_dssp CCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCC
T ss_pred eeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccch
Confidence 99999987643221 122334579999999999876 45677899999999999999998776432221
Q ss_pred ccchhhhhhcccCCcc----cccc-cCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 601 EMTLKHWVNDWLPIST----KEIV-DPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 601 ~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
......+......... .... .................+++++.+++.+||+.||++|||++|+++.|+++...+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~ 321 (336)
T 3g2f_A 242 PEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWE 321 (336)
T ss_dssp CCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCC
T ss_pred hHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHH
Confidence 1111100000000000 0000 0000000000001112356779999999999999999999999999999987765
Q ss_pred hc
Q 005760 676 RN 677 (678)
Q Consensus 676 ~~ 677 (678)
|+
T Consensus 322 ~~ 323 (336)
T 3g2f_A 322 RN 323 (336)
T ss_dssp C-
T ss_pred hc
Confidence 53
No 77
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=355.80 Aligned_cols=254 Identities=20% Similarity=0.287 Sum_probs=205.2
Q ss_pred HhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 389 RATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 389 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
...++|++.+.||+|+||.||+|.. .+|+.+|+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 3467899999999999999999975 5899999999975432 344678899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec---CCCcEEEEeecccccc
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD---DNMVAHLSDFGIAKLL 542 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~---~~~~~kl~Dfg~~~~~ 542 (678)
||||+++|+|.+++.... .+++..+..++.||+.||+||| +++|+||||||+||+++ .++.+||+|||++...
T Consensus 88 v~E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~ 163 (444)
T 3soa_A 88 IFDLVTGGELFEDIVARE-YYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEV 163 (444)
T ss_dssp EECCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCC
T ss_pred EEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEe
Confidence 999999999999998765 4899999999999999999999 99999999999999998 5688999999999766
Q ss_pred CCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccC
Q 005760 543 TREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDP 622 (678)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (678)
.... .......||+.|+|||++.+..++.++||||+||++|+|++|..||.+....+. .......... ...+
T Consensus 164 ~~~~--~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~-~~~i~~~~~~-----~~~~ 235 (444)
T 3soa_A 164 EGEQ--QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRL-YQQIKAGAYD-----FPSP 235 (444)
T ss_dssp CTTC--CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHTCCC-----CCTT
T ss_pred cCCC--ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHH-HHHHHhCCCC-----CCcc
Confidence 4322 223456799999999999998999999999999999999999999965322111 1111111100 0000
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 623 NLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. ...+++++.+++.+||+.||++|||+.|+++
T Consensus 236 ~-----------~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 236 E-----------WDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp T-----------TTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred c-----------cccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0 0123556889999999999999999999986
No 78
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.8e-41 Score=350.93 Aligned_cols=249 Identities=24% Similarity=0.314 Sum_probs=199.4
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~ 464 (678)
..++|++.+.||+|+||.||+|+.+ +|+.||+|++.... ....+.+..|..+++.+ +||||+++++++.+.+..|
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 3578999999999999999999854 78999999997542 23446678899999988 6999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+||||+++|+|.+++...+ .+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+++....
T Consensus 101 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~ 176 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKSR-RFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC 176 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence 9999999999999998765 4899999999999999999999 99999999999999999999999999999975432
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||......+ ......... ...|.
T Consensus 177 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~-~~~~i~~~~-------~~~p~- 245 (353)
T 3txo_A 177 N--GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD-LFEAILNDE-------VVYPT- 245 (353)
T ss_dssp -----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCC-------CCCCT-
T ss_pred C--CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH-HHHHHHcCC-------CCCCC-
Confidence 2 223345679999999999998889999999999999999999999997633221 111111110 00011
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCH------HHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINA------KEIVT 665 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~------~ell~ 665 (678)
..+.++.+++.+||++||++||++ .|+++
T Consensus 246 ------------~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 246 ------------WLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp ------------TSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred ------------CCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 134558899999999999999998 66654
No 79
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=347.00 Aligned_cols=250 Identities=26% Similarity=0.351 Sum_probs=202.7
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 367899999999999999999854 68999999996542 33456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+.+|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.+|.+||+|||+++.....
T Consensus 94 ~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~- 168 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQNV-HFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE- 168 (384)
T ss_dssp ECCCTTEEHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT-
T ss_pred EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCC-
Confidence 99999999999998754 4899999999999999999999 999999999999999999999999999999876432
Q ss_pred CcceeecccCCccccCccccCC---CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 547 QSTIQTQTLATIGYMAPEYGKE---GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||....... ............ ...|
T Consensus 169 --~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~--~~~~~~~~~~~~---~~~p- 240 (384)
T 4fr4_A 169 --TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS--SKEIVHTFETTV---VTYP- 240 (384)
T ss_dssp --CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC--HHHHHHHHHHCC---CCCC-
T ss_pred --CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc--HHHHHHHHhhcc---cCCC-
Confidence 22345679999999999864 458999999999999999999999997532221 111111100000 0000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCC-HHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRIN-AKEIVT 665 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-~~ell~ 665 (678)
..++.++.+++.+||+.||++||+ ++++.+
T Consensus 241 ------------~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 241 ------------SAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp ------------TTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred ------------CcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 123456889999999999999998 666653
No 80
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=2.9e-41 Score=340.62 Aligned_cols=251 Identities=27% Similarity=0.424 Sum_probs=194.6
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccC----chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYG----RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|... ++.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 467889999999999999999974 89999999865422 2346788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC---eEEcCCCCCCeeecC--------CCcEEEEe
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQ---VIHCDLKPSNVLLDD--------NMVAHLSD 535 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~---ivH~dl~~~Nill~~--------~~~~kl~D 535 (678)
|||+++++|.+++... .+++..++.++.|++.|++||| +++ |+||||||+||+++. ++.+||+|
T Consensus 85 ~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~D 159 (271)
T 3dtc_A 85 MEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITD 159 (271)
T ss_dssp EECCTTEEHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECC
T ss_pred EEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccccccccCcceEEcc
Confidence 9999999999999654 4899999999999999999999 777 999999999999985 78899999
Q ss_pred eccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCc
Q 005760 536 FGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPIS 615 (678)
Q Consensus 536 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~ 615 (678)
||++....... .....+++.|+|||.+.+..++.++||||+|+++|+|++|+.||................ ..
T Consensus 160 fg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~-- 232 (271)
T 3dtc_A 160 FGLAREWHRTT----KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNK-LA-- 232 (271)
T ss_dssp CCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSC-CC--
T ss_pred CCccccccccc----ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCC-CC--
Confidence 99997654322 224568999999999998889999999999999999999999997533221111100000 00
Q ss_pred ccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHH
Q 005760 616 TKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKI 670 (678)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~ 670 (678)
.. .+..+++++.+++.+||+.||++|||+.|+++.|+++
T Consensus 233 ------~~----------~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 233 ------LP----------IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp ------CC----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred ------CC----------CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 00 0012345688999999999999999999999999864
No 81
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-41 Score=349.68 Aligned_cols=259 Identities=24% Similarity=0.396 Sum_probs=202.4
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcE----EEEEEeecc-cCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGME----VAMKVFNLQ-YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~----vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
.++|++.+.||+|+||.||+|.. .+++. ||+|.+... .....+.+.+|+.+++.++||||+++++++.... .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 46799999999999999999985 35554 466666433 2345677899999999999999999999998765 78
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+|+||+.+|+|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++....
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~ 169 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC------
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccC
Confidence 999999999999999887777999999999999999999999 99999999999999999999999999999987654
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
...........+|+.|+|||.+.+..++.++||||+||++|||++ |..||....... ....+..... ...
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~~~~~-----~~~-- 240 (327)
T 3lzb_A 170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISSILEKGER-----LPQ-- 240 (327)
T ss_dssp ----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHTTCC-----CCC--
T ss_pred ccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHHHcCCC-----CCC--
Confidence 444444445567889999999999999999999999999999999 999997643322 1111111000 000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
+..++.++.+++.+||+.||++||++.|+++.|+++...
T Consensus 241 -----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 241 -----------PPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp -----------CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred -----------CccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 012345688999999999999999999999999998744
No 82
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.3e-40 Score=341.43 Aligned_cols=263 Identities=24% Similarity=0.419 Sum_probs=208.6
Q ss_pred hcCCCCCccccCCCceeEEEEEe-----CCCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecC--Ce
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-----GDGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNE--EF 462 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~ 462 (678)
.+.|++.+.||+|+||.||+|.+ .+++.||+|++.... ....+.+.+|+++++.++||||+++++++.+. ..
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 99 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 99 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence 34588899999999999999983 478999999997543 23457788999999999999999999999776 67
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
.++||||+++++|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++...
T Consensus 100 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 176 (302)
T 4e5w_A 100 IKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAI 176 (302)
T ss_dssp EEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECcccccccc
Confidence 89999999999999999776667999999999999999999999 999999999999999999999999999999876
Q ss_pred CCCCCc-ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCC----------ccchhhhhhcc
Q 005760 543 TREDQS-TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNG----------EMTLKHWVNDW 611 (678)
Q Consensus 543 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~----------~~~~~~~~~~~ 611 (678)
...... .......+|..|+|||.+.+..++.++||||+|+++|||++|..|+...... ...........
T Consensus 177 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (302)
T 4e5w_A 177 ETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTL 256 (302)
T ss_dssp CTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHH
T ss_pred cCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHH
Confidence 543322 2334556888899999999888999999999999999999999986432110 00000100000
Q ss_pred cCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHH
Q 005760 612 LPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIR 671 (678)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~ 671 (678)
... ... ..+..+++++.+++.+||+.||++|||+.|+++.|+++.
T Consensus 257 ~~~---------~~~------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 257 KEG---------KRL------PCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HTT---------CCC------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hcc---------CCC------CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 000 000 001134567899999999999999999999999999875
No 83
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=3.2e-41 Score=369.01 Aligned_cols=255 Identities=25% Similarity=0.409 Sum_probs=211.0
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
.++|++.+.||+|+||.||+|.++ ++..||||++.... ...+.+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 456888899999999999999865 58899999997543 3457899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 470 MPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 470 ~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
+++|+|.++++... ..+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+++..... ..
T Consensus 298 ~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~-~~ 373 (495)
T 1opk_A 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGD-TY 373 (495)
T ss_dssp CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTC-CE
T ss_pred cCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCC-ce
Confidence 99999999998643 45889999999999999999999 999999999999999999999999999999876432 22
Q ss_pred ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.......++..|+|||++.+..++.++|||||||++|||++ |..||....... ....+..... ..
T Consensus 374 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~--~~~~~~~~~~-----~~------- 439 (495)
T 1opk_A 374 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ--VYELLEKDYR-----ME------- 439 (495)
T ss_dssp ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HHHHHHTTCC-----CC-------
T ss_pred eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCCC-----CC-------
Confidence 22334456789999999998899999999999999999999 899987643221 1111111000 00
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKI 670 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~ 670 (678)
.+..++.++.+++.+||+.||++|||+.|+++.|+.+
T Consensus 440 ------~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 440 ------RPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp ------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred ------CCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 0123556789999999999999999999999999876
No 84
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=3.3e-40 Score=340.69 Aligned_cols=268 Identities=24% Similarity=0.337 Sum_probs=190.3
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
.++|++.+.||+|+||.||+|..+ +|+.||+|++..... ...+.+.+|+++++.++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 468999999999999999999854 789999999975432 334678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 469 YMPHGSLEKYLHSSN-----YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
|++ ++|.+++.... ..+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 997 59999886532 35889999999999999999999 8999999999999999999999999999998764
Q ss_pred CCCCcceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcc--cCCc-ccc-
Q 005760 544 REDQSTIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDW--LPIS-TKE- 618 (678)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~--~~~~-~~~- 618 (678)
... .......+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+....+ ......... .+.. ...
T Consensus 160 ~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~ 236 (317)
T 2pmi_A 160 IPV--NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEE-QLKLIFDIMGTPNESLWPSV 236 (317)
T ss_dssp SCC--CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCTTTCGGG
T ss_pred CCc--ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCChhHhhhh
Confidence 321 223345789999999998764 58999999999999999999999997633211 111111100 0000 000
Q ss_pred ----cccCccCCccchhh------HHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 619 ----IVDPNLLSREDINF------VAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 619 ----~~~~~~~~~~~~~~------~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
...+.......... ......+.++.+++.+||+.||++|||+.|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 237 TKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp GGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 00000000000000 001124567899999999999999999999975
No 85
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=7.5e-41 Score=351.35 Aligned_cols=253 Identities=21% Similarity=0.340 Sum_probs=205.0
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
..++|++.+.||+|+||.||+|..+ +|+.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3567999999999999999999854 789999999975432 3446788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCC---CcEEEEeeccccccC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDN---MVAHLSDFGIAKLLT 543 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~---~~~kl~Dfg~~~~~~ 543 (678)
|||+++|+|.+++.... .+++..+..++.||+.||+||| +++|+||||||+||+++.+ +.+||+|||++....
T Consensus 107 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~ 182 (362)
T 2bdw_A 107 FDLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 182 (362)
T ss_dssp ECCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCT
T ss_pred EecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEec
Confidence 99999999999997654 4899999999999999999999 8999999999999999864 459999999998764
Q ss_pred CCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 544 REDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+....+ ........... ...+
T Consensus 183 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~-~~~~i~~~~~~-----~~~~- 252 (362)
T 2bdw_A 183 DSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR-LYAQIKAGAYD-----YPSP- 252 (362)
T ss_dssp TCC---SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCC-----CCTT-
T ss_pred CCc---ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCCCC-----CCcc-
Confidence 322 2234679999999999999899999999999999999999999997532211 11111111000 0000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTK 666 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~ 666 (678)
....+++++.+++.+||+.||++||++.|+++.
T Consensus 253 ----------~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 253 ----------EWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp ----------GGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred ----------cccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 011245668899999999999999999998753
No 86
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=4.3e-40 Score=346.94 Aligned_cols=253 Identities=17% Similarity=0.162 Sum_probs=208.9
Q ss_pred hhcCCCCCccccCCCceeEEEEE------eCCCcEEEEEEeecccCchhhhHHHHHHHHHhCC---CccceeeeeeeecC
Q 005760 390 ATDGFSENNLIGRGSFGSVFKAR------LGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR---HRNIIKVISSCSNE 460 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~------~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~ 460 (678)
..++|.+.+.||+|+||.||+|. ..+++.||+|++... ....+..|+++++.++ |+||+++++++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 35678999999999999999993 457899999998643 3456788888888887 99999999999999
Q ss_pred CeEEEEEEecCCCCHHHHhhh----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC---------
Q 005760 461 EFKALVLEYMPHGSLEKYLHS----SNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD--------- 527 (678)
Q Consensus 461 ~~~~lv~e~~~~~~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~--------- 527 (678)
+..++||||+++|+|.+++.. ....+++..+..++.||+.||+||| +++|+||||||+|||++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~ 216 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDED 216 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC----
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccc
Confidence 999999999999999999975 3346999999999999999999999 999999999999999998
Q ss_pred --CCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchh
Q 005760 528 --NMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLK 605 (678)
Q Consensus 528 --~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~ 605 (678)
++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|||++|+.||.....+.....
T Consensus 217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~ 296 (365)
T 3e7e_A 217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPE 296 (365)
T ss_dssp --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEEEC
T ss_pred cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCceeec
Confidence 899999999999765433444455667899999999999999999999999999999999999999865433321111
Q ss_pred hhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCC-CCHHHHHHHHHHHHHH
Q 005760 606 HWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQR-INAKEIVTKLLKIRDS 673 (678)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R-ps~~ell~~L~~~~~~ 673 (678)
.. .. .. ...+.+.+++..|++.+|.+| |+++++.+.|+++.++
T Consensus 297 ~~------------~~-----~~--------~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~ 340 (365)
T 3e7e_A 297 GL------------FR-----RL--------PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ 340 (365)
T ss_dssp SC------------CT-----TC--------SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred hh------------cc-----cc--------CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 00 00 00 013346789999999999998 5889999999988665
No 87
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=8e-41 Score=342.32 Aligned_cols=249 Identities=25% Similarity=0.346 Sum_probs=196.3
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--------------------------chhhhHHHHHHHHH
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--------------------------RVFKSFDVECEMMK 443 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--------------------------~~~~~~~~e~~~l~ 443 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 47899999999999999999985 4789999999864321 12356889999999
Q ss_pred hCCCccceeeeeeeec--CCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCC
Q 005760 444 SIRHRNIIKVISSCSN--EEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPS 521 (678)
Q Consensus 444 ~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~ 521 (678)
.++||||+++++++.+ .+..++||||+++++|.+++... .+++..+..++.|++.||+||| +++|+||||||+
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~ 166 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK--PLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKPS 166 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHH
Confidence 9999999999999976 56889999999999998876543 5899999999999999999999 899999999999
Q ss_pred CeeecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCC---CCccchHHHHHHHHHHHHcCCCCCCccc
Q 005760 522 NVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGR---VSANGDVYSFGIMLMETFTRKKPTDEIF 598 (678)
Q Consensus 522 Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~DvwslGv~l~ell~g~~p~~~~~ 598 (678)
||+++.++.+||+|||++....... .......||+.|+|||.+.+.. ++.++||||+||++|||++|+.||....
T Consensus 167 Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~ 244 (298)
T 2zv2_A 167 NLLVGEDGHIKIADFGVSNEFKGSD--ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER 244 (298)
T ss_dssp GEEECTTSCEEECCCTTCEECSSSS--CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HEEECCCCCEEEecCCCcccccccc--ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence 9999999999999999998764322 2234567999999999987765 4778999999999999999999996532
Q ss_pred CCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 599 NGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.. .....+.... . .. +. ...+++++.+++.+||+.||++|||+.|+++
T Consensus 245 ~~--~~~~~~~~~~---~-~~--~~-----------~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 245 IM--CLHSKIKSQA---L-EF--PD-----------QPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HH--HHHHHHHHCC---C-CC--CS-----------SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HH--HHHHHHhccc---C-CC--CC-----------ccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 11 1111111000 0 00 00 0123456889999999999999999999875
No 88
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-40 Score=341.98 Aligned_cols=245 Identities=26% Similarity=0.330 Sum_probs=203.5
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|+.+ +|+.||+|++.... ....+.+.+|..+++.++||||+++++++.+.+..++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 367889999999999999999864 79999999997542 23456678899999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++|+|.+++.... .+++..+..++.||+.||+||| +++|+||||||+||+++.+|.+||+|||+++.....
T Consensus 85 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~- 159 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV- 159 (318)
T ss_dssp ECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-
T ss_pred EeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCc-
Confidence 99999999999998765 4899999999999999999999 999999999999999999999999999999865322
Q ss_pred CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||....... ......... ..-|
T Consensus 160 ----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~-------~~~p---- 223 (318)
T 1fot_A 160 ----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK-TYEKILNAE-------LRFP---- 223 (318)
T ss_dssp ----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHCC-------CCCC----
T ss_pred ----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCC-------CCCC----
Confidence 234579999999999999999999999999999999999999997532211 111111110 0001
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCC-----CHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRI-----NAKEIVT 665 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~ell~ 665 (678)
...++++.+++.+||+.||++|| +++|+++
T Consensus 224 ---------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 224 ---------PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp ---------TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred ---------CCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 12345688999999999999999 8888874
No 89
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=347.55 Aligned_cols=252 Identities=25% Similarity=0.384 Sum_probs=196.5
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCC--ccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRH--RNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h--~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|...+++.||+|++..... ...+.+.+|+.+++.++| |||+++++++.+.+..++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 457899999999999999999988899999999975432 334678899999999986 9999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
||+ .+++|.+++.... .+++..+..++.|++.||+||| +++|+||||||+||+++ ++.+||+|||+++......
T Consensus 88 ~e~-~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~ 161 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 161 (343)
T ss_dssp ECC-CSEEHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred EeC-CCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence 995 5789999998765 4889999999999999999999 89999999999999997 5789999999998765443
Q ss_pred CcceeecccCCccccCccccCC-----------CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCc
Q 005760 547 QSTIQTQTLATIGYMAPEYGKE-----------GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPIS 615 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~-----------~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~ 615 (678)
.........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...................
T Consensus 162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~-- 239 (343)
T 3dbq_A 162 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHE-- 239 (343)
T ss_dssp --------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSC--
T ss_pred ccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcc--
Confidence 3334456679999999998754 678999999999999999999999997533321111111111000
Q ss_pred ccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHH
Q 005760 616 TKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTK 666 (678)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~ 666 (678)
...+. .++.++.+++.+||+.||++|||+.|+++.
T Consensus 240 ---~~~~~-------------~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 240 ---IEFPD-------------IPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp ---CCCCC-------------CSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ---cCCcc-------------cCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 00000 112457899999999999999999999863
No 90
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=2.1e-40 Score=352.42 Aligned_cols=272 Identities=19% Similarity=0.268 Sum_probs=205.6
Q ss_pred hhcCCCCCccccCC--CceeEEEEEeC-CCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 390 ATDGFSENNLIGRG--SFGSVFKARLG-DGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 390 ~~~~~~~~~~ig~G--~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
..++|++.+.||+| +||.||+|+.. +|+.||||++..... ...+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus 23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 35679999999999 99999999865 799999999976532 34567788999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 465 LVLEYMPHGSLEKYLHSS-NYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
+||||+++++|.+++... ...+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||.+....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 999999999999999765 245899999999999999999999 9999999999999999999999999999986543
Q ss_pred CCCC-----cceeecccCCccccCccccCC--CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcc
Q 005760 544 REDQ-----STIQTQTLATIGYMAPEYGKE--GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPIST 616 (678)
Q Consensus 544 ~~~~-----~~~~~~~~~~~~y~aPE~~~~--~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 616 (678)
.... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+........... ....+...
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~-~~~~~~~~ 258 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKL-NGTVPCLL 258 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHh-cCCCCccc
Confidence 2211 111223468899999999887 578999999999999999999999997643332221111 10000000
Q ss_pred c-------cc-------------------ccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 617 K-------EI-------------------VDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 617 ~-------~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. .. ..+...............+++++.+|+.+||++||++|||+.|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~ 333 (389)
T 3gni_B 259 DTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN 333 (389)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 0 00 0000000000011122345677999999999999999999999985
No 91
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=3.4e-41 Score=358.00 Aligned_cols=257 Identities=23% Similarity=0.288 Sum_probs=206.8
Q ss_pred HHHHhhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecc---cCchhhhHHHHHHHHHhCCCccceeeeeeeecCC
Q 005760 386 ELCRATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQ---YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE 461 (678)
Q Consensus 386 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~ 461 (678)
++....++|++.+.||+|+||.||+|+.+ +++.||+|++... .....+.+.+|+.+++.++||||+++++++.+.+
T Consensus 63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~ 142 (410)
T 3v8s_A 63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR 142 (410)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence 34445678999999999999999999865 6899999999653 2234466889999999999999999999999999
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..|+||||+++|+|.++++... +++..+..++.||+.||+||| +++|+||||||+||+++.+|.+||+|||+++.
T Consensus 143 ~~~lV~E~~~gg~L~~~l~~~~--~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~~ 217 (410)
T 3v8s_A 143 YLYMVMEYMPGGDLVNLMSNYD--VPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK 217 (410)
T ss_dssp EEEEEECCCTTEEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred EEEEEEeCCCCCcHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeEe
Confidence 9999999999999999997653 889999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCCCcceeecccCCccccCccccCCCC----CCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccc
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKEGR----VSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTK 617 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 617 (678)
..... ........||+.|+|||++.+.. ++.++||||+||++|||++|+.||.+....+ ...........
T Consensus 218 ~~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~-~~~~i~~~~~~---- 291 (410)
T 3v8s_A 218 MNKEG-MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG-TYSKIMNHKNS---- 291 (410)
T ss_dssp CCTTS-EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTHHHH----
T ss_pred eccCC-cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhh-HHHHHHhcccc----
Confidence 64332 22234567999999999987655 7889999999999999999999997532211 11111110000
Q ss_pred ccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCC--CCCHHHHHH
Q 005760 618 EIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQ--RINAKEIVT 665 (678)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rps~~ell~ 665 (678)
...|. ...++.++.+++.+||+.+|.+ ||+++|+++
T Consensus 292 -~~~p~-----------~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 292 -LTFPD-----------DNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp -CCCCT-----------TCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred -ccCCC-----------cccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 00000 0123456889999999999998 999999875
No 92
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.8e-41 Score=339.70 Aligned_cols=261 Identities=23% Similarity=0.375 Sum_probs=211.5
Q ss_pred cCCCCCc-cccCCCceeEEEEEeC---CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 392 DGFSENN-LIGRGSFGSVFKARLG---DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 392 ~~~~~~~-~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
++|.+.+ .||+|+||.||+|... ++..||+|++..... ...+.+.+|+++++.++||||+++++++. .+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-CCCcEEE
Confidence 4555665 8999999999999753 678899999975432 34577889999999999999999999994 4568999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++++|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~ 164 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD 164 (287)
T ss_dssp EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccCc
Confidence 9999999999999877667999999999999999999999 9999999999999999999999999999998765332
Q ss_pred Cc-ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 547 QS-TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 547 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
.. .......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+.... .+..
T Consensus 165 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--~~~~i~~~~--------~~~~ 234 (287)
T 1u59_A 165 SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE--VMAFIEQGK--------RMEC 234 (287)
T ss_dssp CEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH--HHHHHHTTC--------CCCC
T ss_pred ceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH--HHHHHhcCC--------cCCC
Confidence 21 12233456889999999988889999999999999999998 999997633221 111111100 0000
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHhh
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLLR 676 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~~ 676 (678)
+..+++++.+++.+||+.||++||++.|+++.|+++..+...
T Consensus 235 ----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 276 (287)
T 1u59_A 235 ----------PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 276 (287)
T ss_dssp ----------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHT
T ss_pred ----------CCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 012456688999999999999999999999999999887653
No 93
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=346.32 Aligned_cols=251 Identities=21% Similarity=0.312 Sum_probs=190.4
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
..++|++.+.||+|+||.||+|... +++.||+|++.... ..+.+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 3567999999999999999999865 68899999997543 34667889999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC---CCcEEEEeeccccccCCC
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD---NMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~---~~~~kl~Dfg~~~~~~~~ 545 (678)
|+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||+++.....
T Consensus 129 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~ 204 (349)
T 2w4o_A 129 LVTGGELFDRIVEKG-YYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ 204 (349)
T ss_dssp CCCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC--------
T ss_pred eCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcc
Confidence 999999999997654 4899999999999999999999 899999999999999975 899999999999765422
Q ss_pred CCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
.......||+.|+|||++.+..++.++|||||||++|||++|+.||................... ...+ .
T Consensus 205 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~-----~~~~-~- 274 (349)
T 2w4o_A 205 ---VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYY-----FISP-W- 274 (349)
T ss_dssp -----------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCC-----CCTT-T-
T ss_pred ---cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCc-----cCCc-h-
Confidence 12234568999999999999899999999999999999999999996533322122221111000 0000 0
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
...++.++.+++.+||+.||++|||+.|+++
T Consensus 275 ---------~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 275 ---------WDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp ---------TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ---------hhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0123456889999999999999999999986
No 94
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=7.5e-41 Score=337.45 Aligned_cols=252 Identities=23% Similarity=0.417 Sum_probs=205.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecC--CeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNE--EFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv 466 (678)
.++|++.+.||+|+||.||+|..+ ++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+. +..++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 467889999999999999999984 8999999997543 23446788999999999999999999999876 788999
Q ss_pred EEecCCCCHHHHhhhCCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 467 LEYMPHGSLEKYLHSSNY-ILDIYQRLNIMIDVASALEYLHFGYSAQ--VIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
|||+++|+|.+++..... .+++..+..++.|++.||+||| +++ ++||||||+||+++.++.++++|||++....
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~ 164 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence 999999999999987654 5899999999999999999999 888 9999999999999999999999999875432
Q ss_pred CCCCcceeecccCCccccCccccCCCCCCc---cchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccc
Q 005760 544 REDQSTIQTQTLATIGYMAPEYGKEGRVSA---NGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIV 620 (678)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~---~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (678)
.....+|+.|+|||.+.+..++. ++||||+|+++|||++|+.||..................
T Consensus 165 -------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~-------- 229 (271)
T 3kmu_A 165 -------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLR-------- 229 (271)
T ss_dssp -------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCC--------
T ss_pred -------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCC--------
Confidence 12346889999999988765544 799999999999999999999753322211111100000
Q ss_pred cCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHH
Q 005760 621 DPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRD 672 (678)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~ 672 (678)
+.. +..+++++.+++.+||+.||++|||+.|+++.|+++++
T Consensus 230 -~~~----------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 230 -PTI----------PPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp -CCC----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred -CCC----------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 000 01234568899999999999999999999999998864
No 95
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=348.42 Aligned_cols=246 Identities=22% Similarity=0.329 Sum_probs=198.2
Q ss_pred CccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEecCCCCH
Q 005760 397 NNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEYMPHGSL 475 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L 475 (678)
.+.||+|+||.||+|.. .+|+.||+|++........+.+.+|+++++.++||||+++++++.+.+..++||||+++++|
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L 173 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence 56899999999999985 57999999999865545567889999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee--cCCCcEEEEeeccccccCCCCCcceeec
Q 005760 476 EKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL--DDNMVAHLSDFGIAKLLTREDQSTIQTQ 553 (678)
Q Consensus 476 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill--~~~~~~kl~Dfg~~~~~~~~~~~~~~~~ 553 (678)
.+++......+++..+..++.||+.||+||| +.+|+||||||+||++ +.++.+||+|||+++...... ....
T Consensus 174 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~---~~~~ 247 (373)
T 2x4f_A 174 FDRIIDESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE---KLKV 247 (373)
T ss_dssp HHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC---BCCC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc---cccc
Confidence 9999876667899999999999999999999 9999999999999999 677899999999998764332 2234
Q ss_pred ccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCccchhhH
Q 005760 554 TLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFV 633 (678)
Q Consensus 554 ~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (678)
..||+.|+|||++.+..++.++|||||||++|||++|+.||......+ .+......... ... .
T Consensus 248 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-~~~~i~~~~~~-----~~~-----~------ 310 (373)
T 2x4f_A 248 NFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAE-TLNNILACRWD-----LED-----E------ 310 (373)
T ss_dssp CCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHTCCC-----SCS-----G------
T ss_pred ccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhccCC-----CCh-----h------
Confidence 569999999999998899999999999999999999999997532211 11111111000 000 0
Q ss_pred HHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 634 AKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 634 ~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....+++++.+++.+||++||++|||+.|+++
T Consensus 311 ~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 311 EFQDISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred hhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 00124566889999999999999999999987
No 96
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=1.3e-40 Score=343.70 Aligned_cols=272 Identities=23% Similarity=0.377 Sum_probs=218.7
Q ss_pred CCHHHHHHhhcCCCCCccccCCCceeEEEEEe------CCCcEEEEEEeecccC-chhhhHHHHHHHHHhC-CCccceee
Q 005760 382 FSYLELCRATDGFSENNLIGRGSFGSVFKARL------GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSI-RHRNIIKV 453 (678)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~ 453 (678)
+.........++|++.+.||+|+||.||+|.. .+++.||+|++..... ...+.+.+|+.+++.+ +||||+++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34445555678999999999999999999973 3578899999975433 2346788999999999 79999999
Q ss_pred eeeeecCC-eEEEEEEecCCCCHHHHhhhCCC---------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcC
Q 005760 454 ISSCSNEE-FKALVLEYMPHGSLEKYLHSSNY---------------ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCD 517 (678)
Q Consensus 454 ~~~~~~~~-~~~lv~e~~~~~~L~~~l~~~~~---------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~d 517 (678)
++++...+ ..++||||+++++|.+++..... .+++..+..++.|++.||.||| +++|+|||
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~d 173 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRD 173 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCccccc
Confidence 99987654 58999999999999999986543 2788999999999999999999 89999999
Q ss_pred CCCCCeeecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCc
Q 005760 518 LKPSNVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDE 596 (678)
Q Consensus 518 l~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~ 596 (678)
|||+||+++.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||+|+++|||++ |..||..
T Consensus 174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~ 253 (316)
T 2xir_A 174 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 253 (316)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred CccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999987654444444455668899999999998899999999999999999998 9999876
Q ss_pred ccCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 597 IFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
................. ..+ ..+++++.+++.+||+.||++|||+.|+++.|+++.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~------~~~-------------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 313 (316)
T 2xir_A 254 VKIDEEFCRRLKEGTRM------RAP-------------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 313 (316)
T ss_dssp CCCSHHHHHHHHHTCCC------CCC-------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHhccCccC------CCC-------------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 43322211111111000 000 1134558899999999999999999999999999987643
No 97
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=7.7e-41 Score=348.19 Aligned_cols=266 Identities=23% Similarity=0.375 Sum_probs=214.6
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEeC-CC-----cEEEEEEeecccC-chhhhHHHHHHHHHhC-CCccceeeeeeeec
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARLG-DG-----MEVAMKVFNLQYG-RVFKSFDVECEMMKSI-RHRNIIKVISSCSN 459 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~-----~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~ 459 (678)
....++|++.+.||+|+||.||+|... ++ ..||+|++..... ...+.+.+|+.+++.+ +||||+++++++.+
T Consensus 42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 121 (333)
T 2i1m_A 42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH 121 (333)
T ss_dssp BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence 344678999999999999999999853 22 4799999975432 3456788999999999 89999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHhhhC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec
Q 005760 460 EEFKALVLEYMPHGSLEKYLHSS-------------NYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD 526 (678)
Q Consensus 460 ~~~~~lv~e~~~~~~L~~~l~~~-------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~ 526 (678)
.+..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +++|+||||||+||+++
T Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~ 198 (333)
T 2i1m_A 122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLT 198 (333)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEE
T ss_pred CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEEC
Confidence 99999999999999999999753 234789999999999999999999 89999999999999999
Q ss_pred CCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchh
Q 005760 527 DNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLK 605 (678)
Q Consensus 527 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~ 605 (678)
.++.+||+|||++................+++.|+|||.+.+..++.++|||||||++|||++ |..||.+...... ..
T Consensus 199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~-~~ 277 (333)
T 2i1m_A 199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSK-FY 277 (333)
T ss_dssp GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHH-HH
T ss_pred CCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHH-HH
Confidence 999999999999986654433334445567889999999988899999999999999999999 8899876433221 11
Q ss_pred hhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 606 HWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
..+..... ...+ ..++.++.+++.+||+.||++|||+.|+++.|+++.....
T Consensus 278 ~~~~~~~~-----~~~~-------------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~ 329 (333)
T 2i1m_A 278 KLVKDGYQ-----MAQP-------------AFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQEDR 329 (333)
T ss_dssp HHHHHTCC-----CCCC-------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCC-----CCCC-------------CCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhhh
Confidence 11111100 0000 1124568899999999999999999999999999876643
No 98
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.1e-40 Score=343.84 Aligned_cols=263 Identities=25% Similarity=0.422 Sum_probs=199.7
Q ss_pred HhhcCCCCCccccCCCceeEEEEEeC----CCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCC-
Q 005760 389 RATDGFSENNLIGRGSFGSVFKARLG----DGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEE- 461 (678)
Q Consensus 389 ~~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~- 461 (678)
...++|.+.+.||+|+||.||+|... ++..||+|++..... ...+.+.+|+.+++.++||||+++++++.+.+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 34578899999999999999999743 355899999865432 34467889999999999999999999987654
Q ss_pred ----eEEEEEEecCCCCHHHHhhh-----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEE
Q 005760 462 ----FKALVLEYMPHGSLEKYLHS-----SNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAH 532 (678)
Q Consensus 462 ----~~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~k 532 (678)
..++||||+++++|.+++.. ....+++..++.++.|++.||.||| +++|+||||||+||+++.++.+|
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~k 187 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVC 187 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEE
T ss_pred cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEE
Confidence 35899999999999999853 2346899999999999999999999 99999999999999999999999
Q ss_pred EEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcc
Q 005760 533 LSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDW 611 (678)
Q Consensus 533 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~ 611 (678)
|+|||++................+++.|+|||.+.+..++.++||||||+++|||++ |..||........ ........
T Consensus 188 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~-~~~~~~~~ 266 (313)
T 3brb_A 188 VADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEM-YDYLLHGH 266 (313)
T ss_dssp ECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH-HHHHHTTC
T ss_pred EeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHH-HHHHHcCC
Confidence 999999987654333333344567889999999999899999999999999999999 8888865332211 11111110
Q ss_pred cCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 612 LPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
.+ .. +..+++++.+++.+||+.||++||++.|+++.|+++.+++
T Consensus 267 ~~---------~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l 310 (313)
T 3brb_A 267 RL---------KQ----------PEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 310 (313)
T ss_dssp CC---------CC----------BTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred CC---------CC----------CccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 00 00 0124456889999999999999999999999999998764
No 99
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.4e-41 Score=354.15 Aligned_cols=259 Identities=25% Similarity=0.439 Sum_probs=198.0
Q ss_pred CCCCCccccCCCceeEEEEEeC--C--CcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeee-cCCeEEEE
Q 005760 393 GFSENNLIGRGSFGSVFKARLG--D--GMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCS-NEEFKALV 466 (678)
Q Consensus 393 ~~~~~~~ig~G~~g~V~~~~~~--~--~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~-~~~~~~lv 466 (678)
.|.+.+.||+|+||.||+|... + +..||+|.+.... ....+.+.+|+.+++.++||||+++++++. ..+..++|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 4667789999999999999753 3 2468999986432 345577899999999999999999999864 45678999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++|+|.++++.....+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++......
T Consensus 170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 246 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE 246 (373)
T ss_dssp EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeeccccccccccc
Confidence 9999999999999877767899999999999999999999 8999999999999999999999999999998654322
Q ss_pred Cc--ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 547 QS--TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 547 ~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
.. .......+++.|+|||.+.+..++.++|||||||++|||++ |.+||......+. ...+.... ....+
T Consensus 247 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~--~~~~~~~~-----~~~~p- 318 (373)
T 3c1x_A 247 FDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI--TVYLLQGR-----RLLQP- 318 (373)
T ss_dssp -----------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCH--HHHHHTTC-----CCCCC-
T ss_pred cccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHH--HHHHHcCC-----CCCCC-
Confidence 11 12334567889999999999999999999999999999999 6677765333221 11111000 00011
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
..++.++.+++.+||+.||++||++.|+++.|+++..++
T Consensus 319 ------------~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~ 357 (373)
T 3c1x_A 319 ------------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF 357 (373)
T ss_dssp ------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred ------------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 124556889999999999999999999999999998764
No 100
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=337.75 Aligned_cols=255 Identities=30% Similarity=0.435 Sum_probs=199.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEec
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEYM 470 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 470 (678)
.++|++.+.||+|+||.||+|... ++.||+|++.. ....+.+.+|+++++.++||||+++++++.+ ..++||||+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~ 81 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIES--ESERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYA 81 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSS--TTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECC
T ss_pred HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecC--hhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcC
Confidence 357888999999999999999874 78899999863 3345778999999999999999999999874 378999999
Q ss_pred CCCCHHHHhhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc-EEEEeeccccccCCCCC
Q 005760 471 PHGSLEKYLHSSNY--ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV-AHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 471 ~~~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~-~kl~Dfg~~~~~~~~~~ 547 (678)
++++|.+++..... .++...+..++.|+++||+|||+...++|+||||||+||+++.++. +||+|||++......
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-- 159 (307)
T 2eva_A 82 EGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-- 159 (307)
T ss_dssp TTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---------
T ss_pred CCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc--
Confidence 99999999986543 4788899999999999999999222289999999999999998886 799999999755321
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.....||+.|+|||.+.+..++.++||||||+++|||++|+.||.................. .+...
T Consensus 160 ---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~--------~~~~~-- 226 (307)
T 2eva_A 160 ---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT--------RPPLI-- 226 (307)
T ss_dssp --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTC--------CCCCB--
T ss_pred ---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCC--------CCCcc--
Confidence 22346899999999999989999999999999999999999999754332211111111000 00000
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
..++..+.+++.+||+.||++|||+.|+++.|+.+.+.
T Consensus 227 --------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 264 (307)
T 2eva_A 227 --------KNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRY 264 (307)
T ss_dssp --------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGG
T ss_pred --------cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence 12345688999999999999999999999999988654
No 101
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.4e-40 Score=343.59 Aligned_cols=274 Identities=24% Similarity=0.405 Sum_probs=211.4
Q ss_pred cCC-CCCccccCCCceeEEEEEe-----CCCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeec--CCe
Q 005760 392 DGF-SENNLIGRGSFGSVFKARL-----GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSN--EEF 462 (678)
Q Consensus 392 ~~~-~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~ 462 (678)
++| ++.+.||+|+||.||++.+ .+++.||||++..... ...+.+.+|+++++.++||||+++++++.+ ...
T Consensus 30 ~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (318)
T 3lxp_A 30 KRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS 109 (318)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE
T ss_pred HHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce
Confidence 344 8899999999999998864 2688999999975532 345678899999999999999999999976 467
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
.++||||+++++|.+++.... +++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 184 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEEEEecccCCcHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCccccccc
Confidence 899999999999999998764 899999999999999999999 899999999999999999999999999999876
Q ss_pred CCCCCc-ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc-CCcccccc
Q 005760 543 TREDQS-TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL-PISTKEIV 620 (678)
Q Consensus 543 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 620 (678)
...... .......++..|+|||.+.+..++.++||||+|+++|||++|..||............+..... ........
T Consensus 185 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (318)
T 3lxp_A 185 PEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELL 264 (318)
T ss_dssp CTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHH
Confidence 543221 2234456888899999999888999999999999999999999998653221100000000000 00000000
Q ss_pred cCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHhh
Q 005760 621 DPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLLR 676 (678)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~~ 676 (678)
....... .+..++.++.+++.+||+.||++|||+.|+++.|+++.+++..
T Consensus 265 ~~~~~~~------~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~ 314 (318)
T 3lxp_A 265 ERGERLP------RPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG 314 (318)
T ss_dssp HTTCCCC------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred hcccCCC------CCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhcc
Confidence 0000000 0123456799999999999999999999999999999988754
No 102
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=4.7e-41 Score=349.63 Aligned_cols=250 Identities=23% Similarity=0.309 Sum_probs=202.9
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhC-CCccceeeeeeeecCCe
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEF 462 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~ 462 (678)
....++|.+.+.||+|+||.||+|+.+ +|+.||+|+++... ....+.+..|..+++.+ +||||+++++++.+.+.
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~ 92 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN 92 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence 445688999999999999999999864 78999999997542 23446677899999876 89999999999999999
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
.|+||||+++|+|.+++.... .+++..+..++.||+.||+||| +++|+||||||+||+++.+|.+||+|||+++..
T Consensus 93 ~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 168 (345)
T 1xjd_A 93 LFFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKEN 168 (345)
T ss_dssp EEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence 999999999999999998754 4899999999999999999999 899999999999999999999999999999754
Q ss_pred CCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccC
Q 005760 543 TREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDP 622 (678)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (678)
... ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... .....+.... ..-|
T Consensus 169 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~------~~~p 238 (345)
T 1xjd_A 169 MLG--DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE--ELFHSIRMDN------PFYP 238 (345)
T ss_dssp CCT--TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC------CCCC
T ss_pred ccC--CCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHhCC------CCCC
Confidence 322 12234567999999999999999999999999999999999999999753221 1111111000 0001
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHH-HHH
Q 005760 623 NLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAK-EIV 664 (678)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~-ell 664 (678)
..++.++.+++.+||+.||++||++. |++
T Consensus 239 -------------~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 239 -------------RWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp -------------TTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred -------------cccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 11345688999999999999999997 554
No 103
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=3e-40 Score=338.03 Aligned_cols=261 Identities=26% Similarity=0.447 Sum_probs=206.0
Q ss_pred hcCCCCCccccCCCceeEEEEEeCC----CcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeee-ecCCeEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGD----GMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSC-SNEEFKA 464 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~-~~~~~~~ 464 (678)
..+|++.+.||+|+||.||+|...+ +..||+|.+..... ...+.+.+|+.+++.++||||+++++++ ...+..+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 4568888999999999999998532 33689999865332 3456788999999999999999999985 5566889
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+||||+++++|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++....
T Consensus 104 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 180 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 180 (298)
T ss_dssp EEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred EEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccccccc
Confidence 999999999999999877667899999999999999999999 99999999999999999999999999999986643
Q ss_pred CCC--cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcC-CCCCCcccCCccchhhhhhcccCCccccccc
Q 005760 545 EDQ--STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTR-KKPTDEIFNGEMTLKHWVNDWLPISTKEIVD 621 (678)
Q Consensus 545 ~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (678)
... ........+|+.|+|||.+.+..++.++||||+|+++|||++| .+||......+. ......... ...
T Consensus 181 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~ 253 (298)
T 3f66_A 181 KEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI-TVYLLQGRR------LLQ 253 (298)
T ss_dssp GGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTH-HHHHHTTCC------CCC
T ss_pred cchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHH-HHHHhcCCC------CCC
Confidence 321 1223445678899999999988999999999999999999995 455544222211 111111100 000
Q ss_pred CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 622 PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
+ ..++.++.+++.+||+.||++|||+.|+++.|+++.+++
T Consensus 254 ~-------------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~ 293 (298)
T 3f66_A 254 P-------------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF 293 (298)
T ss_dssp C-------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTS
T ss_pred C-------------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence 1 113456889999999999999999999999999998764
No 104
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=2.5e-40 Score=344.13 Aligned_cols=250 Identities=23% Similarity=0.336 Sum_probs=198.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCC-------
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEE------- 461 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------- 461 (678)
.++|++.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+++++.++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 457889999999999999999865 899999999975433 35577899999999999999999999875433
Q ss_pred --------------------------------------------------eEEEEEEecCCCCHHHHhhhCCC--CCCHH
Q 005760 462 --------------------------------------------------FKALVLEYMPHGSLEKYLHSSNY--ILDIY 489 (678)
Q Consensus 462 --------------------------------------------------~~~lv~e~~~~~~L~~~l~~~~~--~~~~~ 489 (678)
..++||||+++++|.+++..... ..++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 37899999999999999986543 35666
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC----------cceeecccCCcc
Q 005760 490 QRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ----------STIQTQTLATIG 559 (678)
Q Consensus 490 ~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~----------~~~~~~~~~~~~ 559 (678)
.++.++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++....... ........||+.
T Consensus 165 ~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL 241 (332)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred HHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence 78999999999999999 99999999999999999999999999999987654321 122344579999
Q ss_pred ccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHH
Q 005760 560 YMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCV 639 (678)
Q Consensus 560 y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (678)
|+|||.+.+..++.++||||+||++|||++|..|+..... ...... .. . ........+
T Consensus 242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~----~~~~~~-----------~~-~------~~~~~~~~~ 299 (332)
T 3qd2_B 242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVR----IITDVR-----------NL-K------FPLLFTQKY 299 (332)
T ss_dssp GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHH-----------TT-C------CCHHHHHHC
T ss_pred ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHH----HHHHhh-----------cc-C------CCcccccCC
Confidence 9999999999999999999999999999998877532110 000000 00 0 001123455
Q ss_pred HHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 640 SFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 640 ~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
+++.+++.+||+.||++|||+.|+++
T Consensus 300 ~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 300 PQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred hhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 67889999999999999999999986
No 105
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=9.8e-40 Score=341.19 Aligned_cols=276 Identities=24% Similarity=0.376 Sum_probs=215.0
Q ss_pred HHHHHHhhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHh--CCCccceeeeeeeecCC
Q 005760 384 YLELCRATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKS--IRHRNIIKVISSCSNEE 461 (678)
Q Consensus 384 ~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~~~ 461 (678)
........++|++.+.||+|+||.||+|.. +++.||+|++... ....+..|.++++. ++||||+++++++...+
T Consensus 34 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~ 109 (342)
T 1b6c_B 34 LLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDN 109 (342)
T ss_dssp HHHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC
T ss_pred eeecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC
Confidence 344455677899999999999999999988 5899999998643 34567788898887 78999999999998765
Q ss_pred ----eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEEcCCCCCCeeecCCCcEE
Q 005760 462 ----FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGY-----SAQVIHCDLKPSNVLLDDNMVAH 532 (678)
Q Consensus 462 ----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~dl~~~Nill~~~~~~k 532 (678)
..++||||+++|+|.+++... .+++..++.++.|++.||+|||... +.+|+||||||+||+++.++.+|
T Consensus 110 ~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~k 187 (342)
T 1b6c_B 110 GTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCC 187 (342)
T ss_dssp SSCCCEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEE
T ss_pred CccceeEEEEeecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEE
Confidence 789999999999999999865 3899999999999999999999321 47899999999999999999999
Q ss_pred EEeeccccccCCCCCcc--eeecccCCccccCccccCCCC------CCccchHHHHHHHHHHHHcC----------CCCC
Q 005760 533 LSDFGIAKLLTREDQST--IQTQTLATIGYMAPEYGKEGR------VSANGDVYSFGIMLMETFTR----------KKPT 594 (678)
Q Consensus 533 l~Dfg~~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~------~~~~~DvwslGv~l~ell~g----------~~p~ 594 (678)
|+|||++.......... ......+|+.|+|||.+.+.. ++.++|||||||++|||++| ..||
T Consensus 188 L~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~ 267 (342)
T 1b6c_B 188 IADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY 267 (342)
T ss_dssp ECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred EEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCc
Confidence 99999997664332211 234557999999999987652 34689999999999999999 6777
Q ss_pred CcccCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 595 DEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
............+........ ..+... .......++..+.+++.+||+.||++|||+.|+++.|+++.++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 268 YDLVPSDPSVEEMRKVVCEQK----LRPNIP-----NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp TTTSCSSCCHHHHHHHHTTSC----CCCCCC-----GGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred cccCcCcccHHHHHHHHHHHH----hCCCCc-----ccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence 654443333333222111110 111110 01112356677999999999999999999999999999998753
No 106
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=8.2e-40 Score=334.45 Aligned_cols=265 Identities=19% Similarity=0.228 Sum_probs=209.1
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeee-ecCCeEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSC-SNEEFKALVL 467 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~-~~~~~~~lv~ 467 (678)
..++|++.+.||+|+||.||+|.. .+++.||+|++.... ..+.+.+|+.+++.++|++++..++.+ .+.+..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 457899999999999999999985 588999999876433 335788999999999988877776655 6677889999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee---cCCCcEEEEeeccccccCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill---~~~~~~kl~Dfg~~~~~~~ 544 (678)
||+ +++|.+++......+++..+..++.|++.||+||| +++|+||||||+||++ +.++.+||+|||+++....
T Consensus 85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~ 160 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp ECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred Ecc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccC
Confidence 999 89999999876667999999999999999999999 9999999999999999 7899999999999987654
Q ss_pred CCCc-----ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccc--hhhhhhcccCCccc
Q 005760 545 EDQS-----TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT--LKHWVNDWLPISTK 617 (678)
Q Consensus 545 ~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~ 617 (678)
.... .......+|+.|+|||.+.+..++.++||||+||++|||++|+.||......... ............
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-- 238 (296)
T 4hgt_A 161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP-- 238 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC--
T ss_pred cccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccch--
Confidence 3221 1234567999999999999999999999999999999999999999764332211 111100000000
Q ss_pred ccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 618 EIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
.......+++++.+++.+||+.||++|||++|+++.|+++.++..
T Consensus 239 -------------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~ 283 (296)
T 4hgt_A 239 -------------IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp -------------HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred -------------hhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 000001245679999999999999999999999999999987754
No 107
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=1e-40 Score=339.77 Aligned_cols=259 Identities=25% Similarity=0.415 Sum_probs=214.1
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
..++|++.+.||+|+||.||+|... ++..||+|++... ....+.+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 4567889999999999999999865 5889999999754 3345778899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 469 YMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
|+++++|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 165 (288)
T 3kfa_A 90 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT- 165 (288)
T ss_dssp CCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS-
T ss_pred cCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCc-
Confidence 999999999998643 45899999999999999999999 8999999999999999999999999999998765332
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
........+++.|+|||.+.+..++.++||||+|+++|+|++ |..||....... ....+..... ...+
T Consensus 166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~--~~~~~~~~~~-----~~~~---- 234 (288)
T 3kfa_A 166 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ--VYELLEKDYR-----MERP---- 234 (288)
T ss_dssp SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HHHHHHTTCC-----CCCC----
T ss_pred cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHhccCC-----CCCC----
Confidence 233444567889999999998899999999999999999999 899987533221 1111111000 0000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
..+++++.+++.+||+.||++|||+.|+++.|+++...
T Consensus 235 ---------~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 235 ---------EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp ---------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 12345688999999999999999999999999998754
No 108
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=3.4e-41 Score=364.86 Aligned_cols=256 Identities=26% Similarity=0.440 Sum_probs=204.4
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
..++|++.+.||+|+||.||+|.++++..||||++.... ...+.+.+|+++++.++||||+++++++.+ +..++||||
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~ 259 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 259 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehh
Confidence 346788899999999999999998888889999997543 234678999999999999999999999876 678999999
Q ss_pred cCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 470 MPHGSLEKYLHSS-NYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 470 ~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
+++|+|.++++.. ...+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++...... .
T Consensus 260 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-~ 335 (452)
T 1fmk_A 260 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-Y 335 (452)
T ss_dssp CTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred hcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc-e
Confidence 9999999999753 235899999999999999999999 9999999999999999999999999999998664322 2
Q ss_pred ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.......++..|+|||.+.++.++.++|||||||++|||++ |+.||.+....+ ....+..... ..
T Consensus 336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~~~-----~~------- 401 (452)
T 1fmk_A 336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERGYR-----MP------- 401 (452)
T ss_dssp -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTTCC-----CC-------
T ss_pred ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCCC-----CC-------
Confidence 22334557889999999998899999999999999999999 899987533221 1111110000 00
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIR 671 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~ 671 (678)
.+..+++++.+++.+||+.||++|||+.++++.|+++.
T Consensus 402 ------~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 402 ------CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 439 (452)
T ss_dssp ------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred ------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 01135567899999999999999999999999998764
No 109
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=342.07 Aligned_cols=273 Identities=26% Similarity=0.434 Sum_probs=214.4
Q ss_pred hcCCCCCccccCCCceeEEEEEe-----CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCC--eE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-----GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE--FK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~--~~ 463 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++........+.+.+|+++++.++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 45688999999999999999983 468999999997765666678999999999999999999999886644 78
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
++||||+++++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~ 196 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 196 (326)
T ss_dssp EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence 9999999999999999887767999999999999999999999 8999999999999999999999999999998765
Q ss_pred CCCCc-ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC-----Cccc
Q 005760 544 REDQS-TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP-----ISTK 617 (678)
Q Consensus 544 ~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~-----~~~~ 617 (678)
..... .......++..|+|||.+.+..++.++||||||+++|||++|..|+...... .......... ....
T Consensus 197 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 273 (326)
T 2w1i_A 197 QDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGNDKQGQMIVFHLI 273 (326)
T ss_dssp SSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHH---HHHHHCTTCCTHHHHHHHH
T ss_pred ccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHH---HHHhhccccchhhhHHHHH
Confidence 43222 1123345777899999998888999999999999999999999987542110 0000000000 0000
Q ss_pred ccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 618 EIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
..+...... ..+..++.++.+++.+||+.||++|||+.|+++.|+++++++.
T Consensus 274 ~~~~~~~~~------~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l~ 325 (326)
T 2w1i_A 274 ELLKNNGRL------PRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMA 325 (326)
T ss_dssp HHHHTTCCC------CCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC------CCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence 000000000 0012345678999999999999999999999999999998864
No 110
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=4.9e-40 Score=345.15 Aligned_cols=254 Identities=24% Similarity=0.294 Sum_probs=195.0
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
..++|++.+.||+|+||.||+|+.. +++.||+|++.... ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 96 (361)
T 3uc3_A 18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME 96 (361)
T ss_dssp CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence 3568999999999999999999865 89999999997543 234678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc--EEEEeeccccccCCCC
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV--AHLSDFGIAKLLTRED 546 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~--~kl~Dfg~~~~~~~~~ 546 (678)
|+++|+|.+++...+ .+++..+..++.|++.||+||| +++|+||||||+||+++.++. +||+|||+++....
T Consensus 97 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~-- 170 (361)
T 3uc3_A 97 YASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL-- 170 (361)
T ss_dssp CCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC-------
T ss_pred eCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccc--
Confidence 999999999997655 4899999999999999999999 999999999999999987765 99999999874322
Q ss_pred CcceeecccCCccccCccccCCCCCCcc-chHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSAN-GDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~-~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
........||+.|+|||++.+..++.+ +||||+||++|+|++|+.||......... ............. . +.
T Consensus 171 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~-~~~~~~~~~~~~~-~--~~-- 243 (361)
T 3uc3_A 171 -HSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDY-RKTIQRILSVKYS-I--PD-- 243 (361)
T ss_dssp -----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCH-HHHHHHHHTTCCC-C--CT--
T ss_pred -cCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHH-HHHHHHHhcCCCC-C--CC--
Confidence 222334579999999999988887655 89999999999999999999764332221 1111111110000 0 00
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTK 666 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~ 666 (678)
...+++++.+++.+||+.||++|||+.|+++.
T Consensus 244 ---------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 244 ---------DIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp ---------TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred ---------cCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 00134568899999999999999999999863
No 111
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=3.3e-40 Score=334.04 Aligned_cols=251 Identities=24% Similarity=0.297 Sum_probs=206.7
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
..++|++.+.||+|+||.||+|... ++..||+|++........+.+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME 86 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence 4567999999999999999999854 678999999987666667889999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee---cCCCcEEEEeeccccccCCC
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill---~~~~~~kl~Dfg~~~~~~~~ 545 (678)
|+++++|.+++.... .+++..+..++.|++.|++||| +++|+||||||+||++ +.++.+||+|||++......
T Consensus 87 ~~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~ 162 (277)
T 3f3z_A 87 LCTGGELFERVVHKR-VFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPG 162 (277)
T ss_dssp CCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTT
T ss_pred ccCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCc
Confidence 999999999987665 4899999999999999999999 9999999999999999 78899999999999876432
Q ss_pred CCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
. ......+|+.|+|||.+.+ .++.++||||+|+++|||++|+.||......+. ..........
T Consensus 163 ~---~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-~~~~~~~~~~------------ 225 (277)
T 3f3z_A 163 K---MMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEV-MLKIREGTFT------------ 225 (277)
T ss_dssp S---CBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCCC------------
T ss_pred c---chhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHH-HHHHHhCCCC------------
Confidence 2 2344569999999998865 489999999999999999999999975332211 1111110000
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
........+++++.+++.+||+.||++|||+.|+++
T Consensus 226 ----~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 226 ----FPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp ----CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ----CCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000011134567899999999999999999999986
No 112
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=352.73 Aligned_cols=259 Identities=23% Similarity=0.289 Sum_probs=207.2
Q ss_pred HHHHhhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecc---cCchhhhHHHHHHHHHhCCCccceeeeeeeecCC
Q 005760 386 ELCRATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQ---YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE 461 (678)
Q Consensus 386 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~ 461 (678)
+.....++|++.+.||+|+||.||+|+.+ +|+.||+|++... .....+.+.+|..++..++||||+++++++.+.+
T Consensus 55 ~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~ 134 (412)
T 2vd5_A 55 EVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDEN 134 (412)
T ss_dssp HHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred hccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC
Confidence 34445688999999999999999999864 7999999999653 2234567889999999999999999999999999
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..|+||||+++|+|.+++.+.+..+++..+..++.||+.||+||| +++|+||||||+||+++.++++||+|||+++.
T Consensus 135 ~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla~~ 211 (412)
T 2vd5_A 135 YLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLK 211 (412)
T ss_dssp EEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred EEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhhee
Confidence 999999999999999999876556999999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCCCcceeecccCCccccCccccC-------CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCC
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGK-------EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPI 614 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~ 614 (678)
..... ........||+.|+|||++. ...++.++||||+||++|||++|+.||......+. .........
T Consensus 212 ~~~~~-~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~-~~~i~~~~~-- 287 (412)
T 2vd5_A 212 LRADG-TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAET-YGKIVHYKE-- 287 (412)
T ss_dssp CCTTS-CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHTHHH--
T ss_pred ccCCC-ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHH-HHHHHhccc--
Confidence 64332 22233467999999999887 35689999999999999999999999976332211 111111000
Q ss_pred cccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCC---CCHHHHHH
Q 005760 615 STKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQR---INAKEIVT 665 (678)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---ps~~ell~ 665 (678)
....|. ....+++++.+++.+||+ +|++| |+++|+++
T Consensus 288 ---~~~~p~----------~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 288 ---HLSLPL----------VDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp ---HCCCC--------------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred ---CcCCCc----------cccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 000000 011345668899999999 99998 58988864
No 113
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.5e-40 Score=338.63 Aligned_cols=261 Identities=24% Similarity=0.417 Sum_probs=207.5
Q ss_pred CCCCCccccCCCceeEEEEEeC-C---CcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCeE-EEE
Q 005760 393 GFSENNLIGRGSFGSVFKARLG-D---GMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFK-ALV 466 (678)
Q Consensus 393 ~~~~~~~ig~G~~g~V~~~~~~-~---~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~-~lv 466 (678)
.|...+.||+|+||.||+|... + +..||+|++..... ...+.+.+|+.+++.++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 4556789999999999999742 2 33799999865333 3457788999999999999999999999776655 899
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+.+++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 178 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDRE 178 (298)
T ss_dssp ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence 9999999999999886667899999999999999999999 8999999999999999999999999999997654322
Q ss_pred --CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 547 --QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 547 --~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
.........+++.|+|||.+.+..++.++||||+|+++|+|++|+.|+....... .....+..... ...+
T Consensus 179 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~-~~~~~~~~~~~-----~~~~-- 250 (298)
T 3pls_A 179 YYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPF-DLTHFLAQGRR-----LPQP-- 250 (298)
T ss_dssp GGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGG-GHHHHHHTTCC-----CCCC--
T ss_pred ccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHH-HHHHHhhcCCC-----CCCC--
Confidence 1222344567889999999999999999999999999999999666654322211 11111111100 0000
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
..++.++.+++.+||+.||++|||+.|+++.|+++.+++.
T Consensus 251 -----------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~ 290 (298)
T 3pls_A 251 -----------EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALL 290 (298)
T ss_dssp -----------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCC
T ss_pred -----------ccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHh
Confidence 1234568899999999999999999999999999987753
No 114
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=5.6e-40 Score=332.08 Aligned_cols=253 Identities=23% Similarity=0.349 Sum_probs=207.6
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
.++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 467889999999999999999864 789999999975432 345778899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
|+++++|.+++.... .+++..+..++.|++.||+||| +.+++|+||+|+||+++.++.+||+|||.+.........
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~ 161 (276)
T 2yex_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (276)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred ecCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcch
Confidence 999999999997654 4899999999999999999999 899999999999999999999999999999765433222
Q ss_pred ceeecccCCccccCccccCCCCC-CccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRV-SANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.......+++.|+|||.+.+..+ +.++||||+|+++|||++|+.||............+...... ..
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-----------~~- 229 (276)
T 2yex_A 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY-----------LN- 229 (276)
T ss_dssp CCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTT-----------ST-
T ss_pred hcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccc-----------cC-
Confidence 33345678999999999987765 778999999999999999999997644433333322221000 00
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....++.++.+++.+||+.||++|||+.|+++
T Consensus 230 ------~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 230 ------PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp ------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ------chhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 00123456889999999999999999999975
No 115
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=1.3e-40 Score=337.82 Aligned_cols=259 Identities=24% Similarity=0.392 Sum_probs=206.8
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC----CCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG----DGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
..++|.+.+.||+|+||.||+|... ++..||+|++.... ....+.+.+|+.+++.++||||+++++++.+. ..+
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~ 88 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-PTW 88 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-SCE
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-CCE
Confidence 3567899999999999999999743 23469999987542 23457788999999999999999999998764 468
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+||||+++++|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++.....
T Consensus 89 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 165 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIED 165 (281)
T ss_dssp EEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC--
T ss_pred EEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCccccc
Confidence 999999999999999877667899999999999999999999 99999999999999999999999999999986643
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
.. ........+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+ ....+..... ...+
T Consensus 166 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~--~~~~~~~~~~-----~~~~- 236 (281)
T 3cc6_A 166 ED-YYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKD--VIGVLEKGDR-----LPKP- 236 (281)
T ss_dssp --------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGG--HHHHHHHTCC-----CCCC-
T ss_pred cc-ccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHH--HHHHHhcCCC-----CCCC-
Confidence 22 222334557889999999988899999999999999999998 999986533221 1111110000 0000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
..+++.+.+++.+||+.||++||++.|+++.|+++.+.
T Consensus 237 ------------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 237 ------------DLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp ------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence 12345688999999999999999999999999998764
No 116
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=3.5e-40 Score=349.89 Aligned_cols=250 Identities=24% Similarity=0.382 Sum_probs=196.7
Q ss_pred cCCCCCccccCCCceeEEEEEeCCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCC--CccceeeeeeeecCCeEEEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIR--HRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~~~~lv~ 467 (678)
..|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|+++++.++ ||||+++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 4599999999999999999998889999999997543 234577889999999996 599999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
| +.+++|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++ ++.+||+|||+++.......
T Consensus 136 E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~ 209 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 209 (390)
T ss_dssp E-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-----
T ss_pred e-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCc
Confidence 9 56789999998765 5888899999999999999999 99999999999999996 58999999999987654333
Q ss_pred cceeecccCCccccCccccCC-----------CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcc
Q 005760 548 STIQTQTLATIGYMAPEYGKE-----------GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPIST 616 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~-----------~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 616 (678)
........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........+.........
T Consensus 210 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~--- 286 (390)
T 2zmd_A 210 SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHE--- 286 (390)
T ss_dssp ----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSC---
T ss_pred cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCcccc---
Confidence 333455679999999998764 468899999999999999999999997533221111111111000
Q ss_pred cccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 617 KEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
...+. ..+.++.+++.+||+.||++|||+.|+++
T Consensus 287 --~~~~~-------------~~~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 287 --IEFPD-------------IPEKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp --CCCCC-------------CSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred --CCCCc-------------cchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 00000 11345889999999999999999999985
No 117
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=5.6e-41 Score=348.25 Aligned_cols=274 Identities=24% Similarity=0.346 Sum_probs=212.2
Q ss_pred hcCCCCCccccCCCceeEEEEEe-----CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeee--cCCeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-----GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCS--NEEFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~--~~~~~ 463 (678)
.++|++.+.||+|+||.||+|++ .+++.||+|++........+.+.+|+++++.++||||+++++++. +....
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 46789999999999999999983 468899999997665556677899999999999999999999876 45678
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
++||||+++++|.+++......+++..++.++.|++.||+||| +++|+||||||+||+++.++.+||+|||++....
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 178 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLP 178 (327)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred EEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccceecc
Confidence 9999999999999999876556999999999999999999999 8999999999999999999999999999998765
Q ss_pred CCCCc-ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC-Cccccccc
Q 005760 544 REDQS-TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP-ISTKEIVD 621 (678)
Q Consensus 544 ~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 621 (678)
..... .......++..|+|||.+.+..++.++||||+|+++|+|++|+.||................... ........
T Consensus 179 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (327)
T 3lxl_A 179 LDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLE 258 (327)
T ss_dssp TTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHH
T ss_pred cCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhh
Confidence 33222 22344568888999999988889999999999999999999999986532210000000000000 00000000
Q ss_pred CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 622 PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
...... .+..+++++.+++.+||+.||++|||+.|+++.|+.+...
T Consensus 259 ~~~~~~------~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 304 (327)
T 3lxl_A 259 EGQRLP------APPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSG 304 (327)
T ss_dssp TTCCCC------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred cccCCC------CCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 000000 0123456789999999999999999999999999988654
No 118
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=3.7e-40 Score=339.43 Aligned_cols=263 Identities=24% Similarity=0.359 Sum_probs=201.7
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 45799999999999999999985 579999999997532 23456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 467 LEYMPHGSLEKYLHS---SNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
|||+++++|.+++.. ....+++..++.++.|++.||.||| +.+++||||+|+||+++.++.+||+|||++....
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 999999999999864 3445899999999999999999999 8999999999999999999999999999987654
Q ss_pred CCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 544 REDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
... .......+++.|+|||.+.+..++.++||||||+++|||++|+.||.+...........+... .. +.
T Consensus 188 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~---~~-----~~ 257 (310)
T 2wqm_A 188 SKT--TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQC---DY-----PP 257 (310)
T ss_dssp -------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTT---CS-----CC
T ss_pred CCC--ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcc---cC-----CC
Confidence 321 222345689999999999998999999999999999999999999875332221111111110 00 00
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
.. ...++.++.+++.+||+.||++|||+.|+++.|+++++..+
T Consensus 258 ~~---------~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~ 300 (310)
T 2wqm_A 258 LP---------SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300 (310)
T ss_dssp CC---------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred Cc---------ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence 00 01234568899999999999999999999999999987643
No 119
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.4e-41 Score=348.88 Aligned_cols=268 Identities=24% Similarity=0.396 Sum_probs=190.2
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHh--CCCccceeeeeeeecCC----eEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKS--IRHRNIIKVISSCSNEE----FKA 464 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~~~----~~~ 464 (678)
.++|.+.+.||+|+||.||+|+. +++.||||++... ....+..|.+++.. ++||||+++++++.+.+ ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 46899999999999999999987 4899999998642 34567778888887 78999999999987765 789
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEEcCCCCCCeeecCCCcEEEEeeccc
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGY-----SAQVIHCDLKPSNVLLDDNMVAHLSDFGIA 539 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~ 539 (678)
+||||+++|+|.+++.... +++..+..++.|++.|++|||... +++|+||||||+||+++.++.+||+|||++
T Consensus 78 lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DFg~a 155 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EEEECCTTCCHHHHHHHCC--BCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCCCC-
T ss_pred EEEeccCCCCHHHHHhccC--cchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeecCcc
Confidence 9999999999999997654 677788999999999999999322 578999999999999999999999999999
Q ss_pred cccCCCCCcc--eeecccCCccccCccccCCC------CCCccchHHHHHHHHHHHHcC----------CCCCCcccCCc
Q 005760 540 KLLTREDQST--IQTQTLATIGYMAPEYGKEG------RVSANGDVYSFGIMLMETFTR----------KKPTDEIFNGE 601 (678)
Q Consensus 540 ~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~------~~~~~~DvwslGv~l~ell~g----------~~p~~~~~~~~ 601 (678)
.......... ......||+.|+|||.+.+. .++.++|||||||++|||++| +.||.......
T Consensus 156 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3gxj_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-C
T ss_pred eeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCCCC
Confidence 7654332211 12344799999999998776 344689999999999999999 55554432222
Q ss_pred cchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 602 MTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
............. ...+.. ........++..+.+++.+||+.||++|||+.|+++.|+++.++
T Consensus 236 ~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~ 298 (303)
T 3gxj_A 236 PSVEEMRKVVCEQ----KLRPNI-----PNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp CCCC-CHHHHTTS----CCCCCC-----CGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC
T ss_pred ccHHHHHHHHHHh----hcCCCc-----cccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhh
Confidence 1111111111000 001111 11111235677899999999999999999999999999988643
No 120
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-40 Score=345.16 Aligned_cols=259 Identities=27% Similarity=0.473 Sum_probs=203.1
Q ss_pred cCCCCCccccCCCceeEEEEEeCC-----CcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLGD-----GMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~~-----~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
++|+..+.||+|+||.||+|.... +..||+|++..... .....+.+|+.+++.++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 467778999999999999997532 34699999975432 344578899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
||||+++++|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++......
T Consensus 124 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~ 200 (333)
T 1mqb_A 124 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD 200 (333)
T ss_dssp EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhccc
Confidence 99999999999999877667999999999999999999999 899999999999999999999999999999876433
Q ss_pred CC-cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 546 DQ-STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 546 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
.. ........+++.|+|||.+.+..++.++|||||||++|||++ |+.||......+ ....+.... ....
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~--~~~~~~~~~-----~~~~-- 271 (333)
T 1mqb_A 201 PEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE--VMKAINDGF-----RLPT-- 271 (333)
T ss_dssp ----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTTC-----CCCC--
T ss_pred cccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHH--HHHHHHCCC-----cCCC--
Confidence 21 112233456788999999998899999999999999999999 999986532211 111111000 0000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
+..++.++.+++.+||+.||++||++.|+++.|+++...
T Consensus 272 -----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 310 (333)
T 1mqb_A 272 -----------PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 310 (333)
T ss_dssp -----------CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred -----------cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 012455688999999999999999999999999998754
No 121
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=2.1e-40 Score=345.40 Aligned_cols=248 Identities=24% Similarity=0.293 Sum_probs=199.0
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC---chhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG---RVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~l 465 (678)
.++|++.+.||+|+||.||+|+.+ +++.||+|++..... ...+.+.+|..+++.+ +||||+++++++.+.+..|+
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 357889999999999999999864 689999999975432 2345678899999987 89999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
||||+++|+|.+++...+ .+++..+..++.||+.||+||| +++|+||||||+||+++.++++||+|||+++.....
T Consensus 88 v~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~ 163 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 163 (345)
T ss_dssp EECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCT
T ss_pred EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccCC
Confidence 999999999999998654 4899999999999999999999 999999999999999999999999999999754322
Q ss_pred CCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCcc----chhhhhhcccCCccccccc
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEM----TLKHWVNDWLPISTKEIVD 621 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 621 (678)
........||+.|+|||++.+..++.++||||+||++|||++|+.||........ ............ ...-
T Consensus 164 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~---~~~~ 238 (345)
T 3a8x_A 164 --GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK---QIRI 238 (345)
T ss_dssp --TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHC---CCCC
T ss_pred --CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcC---CCCC
Confidence 1223456799999999999999999999999999999999999999965322110 000000000000 0000
Q ss_pred CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCH
Q 005760 622 PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINA 660 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~ 660 (678)
| ...+.++.+++.+||+.||++||++
T Consensus 239 p-------------~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 239 P-------------RSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp C-------------TTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred C-------------CCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 0 1234568899999999999999996
No 122
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.5e-40 Score=336.85 Aligned_cols=259 Identities=25% Similarity=0.438 Sum_probs=210.7
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
..++|++.+.||+|+||.||+|...++..||+|++.... ...+.+.+|+++++.++||||+++++++.+ +..++||||
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~ 88 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEY 88 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEec
Confidence 456788999999999999999998888899999986543 345778999999999999999999999875 457899999
Q ss_pred cCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 470 MPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 470 ~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
+++++|.+++.... ..+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++....... .
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~ 164 (279)
T 1qpc_A 89 MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-Y 164 (279)
T ss_dssp CTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC-E
T ss_pred CCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcc-c
Confidence 99999999997543 25899999999999999999999 9999999999999999999999999999998764322 2
Q ss_pred ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.......++..|+|||.+.++.++.++||||+|+++|||++ |+.||......+ ....+.... ....+
T Consensus 165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--~~~~~~~~~-----~~~~~----- 232 (279)
T 1qpc_A 165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE--VIQNLERGY-----RMVRP----- 232 (279)
T ss_dssp ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTTC-----CCCCC-----
T ss_pred ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH--HHHHHhccc-----CCCCc-----
Confidence 22334457788999999988889999999999999999999 899986532211 111111000 00000
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
..++.++.+++.+||+.||++|||+.++++.|+++....
T Consensus 233 --------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 271 (279)
T 1qpc_A 233 --------DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271 (279)
T ss_dssp --------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred --------ccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhc
Confidence 123456889999999999999999999999999987653
No 123
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.1e-39 Score=333.44 Aligned_cols=264 Identities=19% Similarity=0.232 Sum_probs=211.5
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeee-ecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSC-SNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~-~~~~~~~lv~e 468 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++.... ..+.+.+|+.+++.++|++++..+..+ .+.+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 57899999999999999999985 689999999986543 335688999999999998877666655 66778899999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee---cCCCcEEEEeeccccccCCC
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill---~~~~~~kl~Dfg~~~~~~~~ 545 (678)
|+ +++|.+++......+++..+..++.|++.||+||| +++|+||||||+||++ +.++.+||+|||++......
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~ 161 (296)
T 3uzp_A 86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 161 (296)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred ec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence 99 89999999866667999999999999999999999 9999999999999999 48899999999999876543
Q ss_pred CCc-----ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCcc--chhhhhhcccCCcccc
Q 005760 546 DQS-----TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEM--TLKHWVNDWLPISTKE 618 (678)
Q Consensus 546 ~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~ 618 (678)
... .......+|+.|+|||.+.+..++.++|||||||++|||++|+.||........ ..............
T Consensus 162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (296)
T 3uzp_A 162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI-- 239 (296)
T ss_dssp TTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH--
T ss_pred ccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCch--
Confidence 221 123456799999999999999999999999999999999999999976432211 11111110000000
Q ss_pred cccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 619 IVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
......+++++.+++.+||+.||++||++.|+++.|+++.....
T Consensus 240 -------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~ 283 (296)
T 3uzp_A 240 -------------EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp -------------HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred -------------HHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence 00012345679999999999999999999999999999987643
No 124
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=4.8e-40 Score=339.72 Aligned_cols=260 Identities=22% Similarity=0.290 Sum_probs=206.9
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeee----cCCeEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCS----NEEFKAL 465 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~----~~~~~~l 465 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++........+.+.+|+++++.++||||+++++++. .....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 46799999999999999999985 589999999987655556678899999999999999999999986 3457889
Q ss_pred EEEecCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 466 VLEYMPHGSLEKYLHS---SNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
||||+++++|.+++.. ....+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 9999999999999876 3456899999999999999999999 899999999999999999999999999998765
Q ss_pred CCCCCc-------ceeecccCCccccCccccCCCC---CCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc
Q 005760 543 TREDQS-------TIQTQTLATIGYMAPEYGKEGR---VSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL 612 (678)
Q Consensus 543 ~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~---~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~ 612 (678)
...... .......+++.|+|||.+.+.. ++.++||||||+++|||++|+.||..................
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~ 264 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQL 264 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC-
T ss_pred ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccC
Confidence 321110 0112345799999999987554 688999999999999999999999753332222222111100
Q ss_pred CCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHH
Q 005760 613 PISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIR 671 (678)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~ 671 (678)
. .+. ...++.++.+++.+||+.||.+||++.|+++.|+++.
T Consensus 265 ~-------~~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~ 305 (317)
T 2buj_A 265 S-------IPQ-----------SPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ 305 (317)
T ss_dssp --------CCC-----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred C-------CCc-----------cccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence 0 000 0123456889999999999999999999999999875
No 125
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=2e-40 Score=346.01 Aligned_cols=244 Identities=21% Similarity=0.252 Sum_probs=203.3
Q ss_pred cCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
++|++.+.||+|+||.||+|+.. +|+.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..|+||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 57899999999999999999864 79999999996542 234567888999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+++|+|.+++.... .+++..+..++.||+.||+||| +++|+||||||+||+++.+|.+||+|||+++.....
T Consensus 121 e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~-- 194 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-- 194 (350)
T ss_dssp ECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC--
T ss_pred cCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCC--
Confidence 9999999999998765 4899999999999999999999 999999999999999999999999999999866432
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||......+ .......... .-|
T Consensus 195 ---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~i~~~~~-------~~p----- 258 (350)
T 1rdq_E 195 ---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ-IYEKIVSGKV-------RFP----- 258 (350)
T ss_dssp ---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCC-------CCC-----
T ss_pred ---cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHH-HHHHHHcCCC-------CCC-----
Confidence 234568999999999999999999999999999999999999997532211 1111111100 001
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCC-----HHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRIN-----AKEIVT 665 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~ell~ 665 (678)
..++.++.+++.+||+.||++||+ ++|+++
T Consensus 259 --------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 259 --------SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp --------TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred --------CCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 123456889999999999999998 788764
No 126
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=347.62 Aligned_cols=266 Identities=14% Similarity=0.159 Sum_probs=209.1
Q ss_pred hcCCCCCccccCCCceeEEEEEeC---------CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCcccee---------
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG---------DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIK--------- 452 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~---------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~--------- 452 (678)
.++|++.+.||+|+||.||+|... +++.||+|++... +.+.+|+++++.++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 368999999999999999999865 3789999998643 56889999999999999998
Q ss_pred ------eeeeeec-CCeEEEEEEecCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCee
Q 005760 453 ------VISSCSN-EEFKALVLEYMPHGSLEKYLHSS-NYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVL 524 (678)
Q Consensus 453 ------~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nil 524 (678)
+++++.. .+..++||||+ +++|.+++... ...+++..+..++.|++.||+||| +++|+||||||+||+
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIl 191 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAENIF 191 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGGEE
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEE
Confidence 5566654 67889999999 99999999875 346899999999999999999999 899999999999999
Q ss_pred ecCCC--cEEEEeeccccccCCCCCc-----ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcc
Q 005760 525 LDDNM--VAHLSDFGIAKLLTREDQS-----TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEI 597 (678)
Q Consensus 525 l~~~~--~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~ 597 (678)
++.++ .+||+|||+++........ .......+|+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus 192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 271 (352)
T 2jii_A 192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNC 271 (352)
T ss_dssp EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence 99998 9999999999876533211 1223457999999999999989999999999999999999999999875
Q ss_pred cCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 598 FNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
.............+.. ....+.+.... ...+++++.+++.+||+.||++||+++|+++.|+++.++..
T Consensus 272 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 339 (352)
T 2jii_A 272 LPNTEDIMKQKQKFVD-KPGPFVGPCGH---------WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLR 339 (352)
T ss_dssp TTCHHHHHHHHHHHHH-SCCCEECTTSC---------EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHhccC-Chhhhhhhccc---------cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence 4333222222221111 01111111000 00134568899999999999999999999999999987653
No 127
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.2e-40 Score=337.56 Aligned_cols=253 Identities=23% Similarity=0.354 Sum_probs=204.6
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CC-------cEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DG-------MEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEF 462 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 462 (678)
.++|.+.+.||+|+||.||+|... ++ ..||+|++........+.+.+|+++++.++||||+++++++.+.+.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 467889999999999999999753 33 5799999976666667889999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc--------EEEE
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV--------AHLS 534 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~--------~kl~ 534 (678)
.++||||+++++|.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++. +||+
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~ 163 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLS 163 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeec
Confidence 99999999999999999887666999999999999999999999 999999999999999998887 9999
Q ss_pred eeccccccCCCCCcceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC
Q 005760 535 DFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP 613 (678)
Q Consensus 535 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~ 613 (678)
|||++...... ....+++.|+|||.+.+ ..++.++||||+|+++|||++|..|+......... .........
T Consensus 164 Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~-~~~~~~~~~ 236 (289)
T 4fvq_A 164 DPGISITVLPK------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRK-LQFYEDRHQ 236 (289)
T ss_dssp CCCSCTTTSCH------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH-HHHHHTTCC
T ss_pred cCcccccccCc------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHH-HHHhhccCC
Confidence 99998654321 23457889999999887 67899999999999999999966554332221111 111110000
Q ss_pred CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 614 ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
. +. ..+.++.+++.+||+.||++|||+.|+++.|+++...
T Consensus 237 --~-----~~-------------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 237 --L-----PA-------------PKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp --C-----CC-------------CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred --C-----CC-------------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence 0 00 0123377899999999999999999999999987654
No 128
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=351.92 Aligned_cols=277 Identities=20% Similarity=0.273 Sum_probs=211.9
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCC--eEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE--FKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~--~~~lv 466 (678)
.++|.+.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+ ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 457899999999999999999865 69999999997543 234567789999999999999999999987654 78999
Q ss_pred EEecCCCCHHHHhhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee----cCCCcEEEEeecccc
Q 005760 467 LEYMPHGSLEKYLHSSNY--ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL----DDNMVAHLSDFGIAK 540 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill----~~~~~~kl~Dfg~~~ 540 (678)
|||+++|+|.+++..... .+++..++.++.|++.||+||| +++|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 999999999999976432 3899999999999999999999 9999999999999999 788889999999998
Q ss_pred ccCCCCCcceeecccCCccccCccccCC--------CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhh---hhh
Q 005760 541 LLTREDQSTIQTQTLATIGYMAPEYGKE--------GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKH---WVN 609 (678)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~--------~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~---~~~ 609 (678)
...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||............ ...
T Consensus 165 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~ 241 (396)
T 4eut_A 165 ELEDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT 241 (396)
T ss_dssp ECCCGG---GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHH
T ss_pred EccCCC---ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhc
Confidence 764322 2234579999999998764 56788999999999999999999999754332222111 111
Q ss_pred cccCCcccccccCcc-----CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 610 DWLPISTKEIVDPNL-----LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 610 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
..++.....+..... ..............+..+.+++.+||+.||++||++.|+++.++++.+.
T Consensus 242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp SCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred CCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 111111110000000 0000000111245677799999999999999999999999999887653
No 129
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=333.58 Aligned_cols=250 Identities=23% Similarity=0.396 Sum_probs=185.8
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
..++|++.+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 88 (278)
T 3cok_A 9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL 88 (278)
T ss_dssp SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence 346799999999999999999985 579999999996542 2234678899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
||||+++++|.+++......+++..+..++.|++.|++||| +++++||||||+||+++.++.+||+|||++......
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~ 165 (278)
T 3cok_A 89 VLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP 165 (278)
T ss_dssp EEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred EEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCC
Confidence 99999999999999877667899999999999999999999 899999999999999999999999999999866432
Q ss_pred CCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
.. ......+++.|+|||.+.+..++.++||||+|+++|||++|+.||........ .... . ......+
T Consensus 166 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~----~---~~~~~~~--- 232 (278)
T 3cok_A 166 HE--KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT-LNKV----V---LADYEMP--- 232 (278)
T ss_dssp ----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC------C----C---SSCCCCC---
T ss_pred CC--cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH-HHHH----h---hcccCCc---
Confidence 21 22345689999999999988899999999999999999999999875322211 0000 0 0000001
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..++.++.+++.+||+.||++|||+.|+++
T Consensus 233 ----------~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 233 ----------SFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp ----------TTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ----------cccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 123456889999999999999999999986
No 130
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.3e-40 Score=340.35 Aligned_cols=244 Identities=25% Similarity=0.359 Sum_probs=203.2
Q ss_pred HhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--------chhhhHHHHHHHHHhCCCccceeeeeeeec
Q 005760 389 RATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--------RVFKSFDVECEMMKSIRHRNIIKVISSCSN 459 (678)
Q Consensus 389 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~ 459 (678)
...++|++.+.||+|+||.||+|.. .+++.||||++..... ...+.+.+|+.+++.++||||+++++++.+
T Consensus 21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~ 100 (335)
T 3dls_A 21 EYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN 100 (335)
T ss_dssp HHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred ccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence 3457899999999999999999984 5789999999975431 134567789999999999999999999999
Q ss_pred CCeEEEEEEecCCC-CHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecc
Q 005760 460 EEFKALVLEYMPHG-SLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGI 538 (678)
Q Consensus 460 ~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~ 538 (678)
.+..++||||+.+| +|.+++.... .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+
T Consensus 101 ~~~~~lv~e~~~~g~~l~~~~~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~ 176 (335)
T 3dls_A 101 QGFFQLVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGS 176 (335)
T ss_dssp SSEEEEEEECCTTSCBHHHHHHTCC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred CCEEEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeeccc
Confidence 99999999998776 9999998765 4899999999999999999999 89999999999999999999999999999
Q ss_pred ccccCCCCCcceeecccCCccccCccccCCCCC-CccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccc
Q 005760 539 AKLLTREDQSTIQTQTLATIGYMAPEYGKEGRV-SANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTK 617 (678)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 617 (678)
+....... ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||...... ...
T Consensus 177 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-------~~~------- 239 (335)
T 3dls_A 177 AAYLERGK---LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET-------VEA------- 239 (335)
T ss_dssp CEECCTTC---CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG-------TTT-------
T ss_pred ceECCCCC---ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH-------Hhh-------
Confidence 98764332 2234568999999999888776 78999999999999999999999652211 000
Q ss_pred ccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHH
Q 005760 618 EIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTK 666 (678)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~ 666 (678)
....+. .+++++.+++.+||++||++|||+.|+++.
T Consensus 240 ~~~~~~-------------~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 240 AIHPPY-------------LVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp CCCCSS-------------CCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred ccCCCc-------------ccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000011 134558899999999999999999999873
No 131
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=348.07 Aligned_cols=265 Identities=17% Similarity=0.195 Sum_probs=201.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeC----CCcEEEEEEeecccCc-----------hhhhHHHHHHHHHhCCCccceeeee
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG----DGMEVAMKVFNLQYGR-----------VFKSFDVECEMMKSIRHRNIIKVIS 455 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv~~~~ 455 (678)
.++|.+.+.||+|+||.||+|... ++..||+|++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 467999999999999999999864 5788999998754321 1234667888999999999999999
Q ss_pred eeec----CCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC--
Q 005760 456 SCSN----EEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM-- 529 (678)
Q Consensus 456 ~~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~-- 529 (678)
++.+ ....++||||+ +++|.+++...+ .+++..++.++.|++.||+||| +++|+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~ 190 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPD 190 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTT
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCC
Confidence 9877 77899999999 999999998765 5899999999999999999999 89999999999999998877
Q ss_pred cEEEEeeccccccCCCCCc-----ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccch
Q 005760 530 VAHLSDFGIAKLLTREDQS-----TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTL 604 (678)
Q Consensus 530 ~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~ 604 (678)
.+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..........
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~ 270 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAV 270 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHH
Confidence 9999999999876432211 11244579999999999999899999999999999999999999996533332222
Q ss_pred hhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHH
Q 005760 605 KHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKI 670 (678)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~ 670 (678)
........... .... ........++.++.+++.+||+.||++||++.|+++.|+.+
T Consensus 271 ~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 326 (345)
T 2v62_A 271 QTAKTNLLDEL-PQSV---------LKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPH 326 (345)
T ss_dssp HHHHHHHHHTT-THHH---------HHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTT
T ss_pred HHHHHhhcccc-cHHH---------HhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhcc
Confidence 21111111000 0000 00000013556799999999999999999999999999864
No 132
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=9.1e-40 Score=338.13 Aligned_cols=251 Identities=22% Similarity=0.314 Sum_probs=205.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCc------hhhhHHHHHHHHHhCCCccceeeeeeeecCCeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGR------VFKSFDVECEMMKSIRHRNIIKVISSCSNEEFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 463 (678)
.++|++.+.||+|+||.||+|... +|+.||+|++...... ..+.+.+|+.+++.++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 457889999999999999999864 7899999999754321 346788999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC----cEEEEeeccc
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM----VAHLSDFGIA 539 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~----~~kl~Dfg~~ 539 (678)
++||||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~ 166 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (321)
T ss_dssp EEEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCccc
Confidence 99999999999999997654 4889999999999999999999 89999999999999999888 8999999999
Q ss_pred cccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccccc
Q 005760 540 KLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEI 619 (678)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (678)
....... ......+|+.|+|||.+.+..++.++||||+|+++|+|++|+.||......+ ..........
T Consensus 167 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~------- 235 (321)
T 2a2a_A 167 HEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLANITSVSY------- 235 (321)
T ss_dssp EECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHTTCC-------
T ss_pred eecCccc---cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhccc-------
Confidence 8764322 2234568999999999998899999999999999999999999996532211 1111100000
Q ss_pred ccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 620 VDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. ........++..+.+++.+||+.||++|||+.|+++
T Consensus 236 ------~---~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 236 ------D---FDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp ------C---CCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred ------c---cChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 0 000111234566889999999999999999999986
No 133
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=5.8e-40 Score=339.71 Aligned_cols=247 Identities=20% Similarity=0.276 Sum_probs=180.2
Q ss_pred CccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCC-CccceeeeeeeecCCeEEEEEEecCCCC
Q 005760 397 NNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-HRNIIKVISSCSNEEFKALVLEYMPHGS 474 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~ 474 (678)
.+.||+|+||.||+|... +++.||||++... ....+.+|+.+++.+. ||||+++++++.+.+..++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 478999999999999864 7899999999643 3466788999999997 9999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC---cEEEEeeccccccCCCCCccee
Q 005760 475 LEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM---VAHLSDFGIAKLLTREDQSTIQ 551 (678)
Q Consensus 475 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~---~~kl~Dfg~~~~~~~~~~~~~~ 551 (678)
|.+++.... .+++..+..++.|++.||+||| +++|+||||||+||+++.++ .+||+|||+++..... ....
T Consensus 93 L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~--~~~~ 166 (325)
T 3kn6_A 93 LFERIKKKK-HFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD--NQPL 166 (325)
T ss_dssp HHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCC--CCcc
Confidence 999998764 5899999999999999999999 99999999999999997665 8999999999865432 2223
Q ss_pred ecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCc--cchhhhhhcccCCcccccccCccCCccc
Q 005760 552 TQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGE--MTLKHWVNDWLPISTKEIVDPNLLSRED 629 (678)
Q Consensus 552 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (678)
....+|+.|+|||++.+..++.++||||+||++|||++|+.||....... ............ ... .
T Consensus 167 ~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~--------~~~----~ 234 (325)
T 3kn6_A 167 KTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKK--------GDF----S 234 (325)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTT--------TCC----C
T ss_pred cccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHc--------CCC----C
Confidence 44568999999999999999999999999999999999999997643221 011111111000 000 0
Q ss_pred hhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHH
Q 005760 630 INFVAKEQCVSFVFNVAMECTVESPEQRINAKEIV 664 (678)
Q Consensus 630 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell 664 (678)
........+++++.+++.+||+.||++|||++|++
T Consensus 235 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell 269 (325)
T 3kn6_A 235 FEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLR 269 (325)
T ss_dssp CCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTST
T ss_pred CCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHh
Confidence 01111234567799999999999999999999886
No 134
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=370.46 Aligned_cols=252 Identities=23% Similarity=0.385 Sum_probs=202.8
Q ss_pred cccCCCceeEEEEEeC---CCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEecCCCC
Q 005760 399 LIGRGSFGSVFKARLG---DGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEYMPHGS 474 (678)
Q Consensus 399 ~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 474 (678)
.||+|+||.||+|.+. ++..||||+++... ....+.+.+|+++++.++||||+++++++.+ +..++||||+++|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 7999999999999753 56789999997543 2356789999999999999999999999976 56899999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC-cceeec
Q 005760 475 LEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ-STIQTQ 553 (678)
Q Consensus 475 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~ 553 (678)
|.+++......+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+++....... ......
T Consensus 422 L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~ 498 (613)
T 2ozo_A 422 LHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSA 498 (613)
T ss_dssp HHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-----------
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccC
Confidence 99999877667999999999999999999999 89999999999999999999999999999987643321 112233
Q ss_pred ccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCccchhh
Q 005760 554 TLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINF 632 (678)
Q Consensus 554 ~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (678)
..+++.|+|||++.++.++.++|||||||++|||++ |+.||......+ ....+..... ..
T Consensus 499 ~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~--~~~~i~~~~~-----~~------------ 559 (613)
T 2ozo_A 499 GKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE--VMAFIEQGKR-----ME------------ 559 (613)
T ss_dssp ---CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH--HHHHHHTTCC-----CC------------
T ss_pred CCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHHHcCCC-----CC------------
Confidence 446689999999998999999999999999999998 999997643322 1111111000 00
Q ss_pred HHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 633 VAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 633 ~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
.+..+++++.++|.+||+.||++||++.++++.|+.+..+.
T Consensus 560 -~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~ 600 (613)
T 2ozo_A 560 -CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL 600 (613)
T ss_dssp -CCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred -CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence 01135667999999999999999999999999999987664
No 135
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=2.1e-40 Score=345.86 Aligned_cols=249 Identities=20% Similarity=0.261 Sum_probs=202.8
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~ 464 (678)
..++|++.+.||+|+||.||+|+.+ +++.||+|++.... ....+.+..|..+++.+ +||+|+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 4578999999999999999999865 58899999997542 23456678899999987 7999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+||||+++|+|.+++...+ .+++..+..++.||+.||+||| +++|+||||||+||+++.+|.+||+|||+++....
T Consensus 98 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 173 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 173 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence 9999999999999998754 4899999999999999999999 89999999999999999999999999999975432
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+....+ .......... .-|
T Consensus 174 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~-~~~~i~~~~~-------~~p-- 241 (353)
T 2i0e_A 174 D--GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE-LFQSIMEHNV-------AYP-- 241 (353)
T ss_dssp T--TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCC-------CCC--
T ss_pred C--CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHH-HHHHHHhCCC-------CCC--
Confidence 2 122345679999999999999999999999999999999999999997532211 1111111000 001
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCC-----HHHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRIN-----AKEIVT 665 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps-----~~ell~ 665 (678)
...+.++.+++.+||+.||++||+ +.|+++
T Consensus 242 -----------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 242 -----------KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp -----------TTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred -----------CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 123456889999999999999995 566654
No 136
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=2.8e-40 Score=342.49 Aligned_cols=248 Identities=24% Similarity=0.336 Sum_probs=194.2
Q ss_pred hcCCCCCccccCCCceeEEEEEe----CCCcEEEEEEeeccc----CchhhhHHHHHHHHHhCCCccceeeeeeeecCCe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL----GDGMEVAMKVFNLQY----GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEF 462 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 462 (678)
.++|++.+.||+|+||.||+|+. .+++.||+|++.... ......+.+|+.+++.++||||+++++++.+.+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46799999999999999999985 478999999986532 2334567889999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
.++||||+++++|.+++.... .+++..+..++.||+.||.||| +++|+||||||+||+++.++.+||+|||+++..
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~ 171 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKES 171 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred EEEEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence 999999999999999998654 4888999999999999999999 899999999999999999999999999998754
Q ss_pred CCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccC
Q 005760 543 TREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDP 622 (678)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (678)
... ........||+.|+|||++.+..++.++||||+||++|||++|+.||....... .......... ..+
T Consensus 172 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~-------~~p 241 (327)
T 3a62_A 172 IHD--GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK-TIDKILKCKL-------NLP 241 (327)
T ss_dssp ---------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHTCC-------CCC
T ss_pred ccC--CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCCC-------CCC
Confidence 322 122344579999999999999899999999999999999999999997532211 1111111000 000
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCC-----CHHHHHH
Q 005760 623 NLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRI-----NAKEIVT 665 (678)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~ell~ 665 (678)
...+.++.+++.+||+.||++|| ++.|+++
T Consensus 242 -------------~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 242 -------------PYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp -------------TTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 12345688999999999999999 7778765
No 137
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.4e-40 Score=338.77 Aligned_cols=244 Identities=22% Similarity=0.243 Sum_probs=194.1
Q ss_pred cCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC--chhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG--RVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~ 467 (678)
++|++.+.||+|+||+||+|... +|+.||||++..... ........|+..+..+ +||||+++++++.+.+..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57999999999999999999865 799999999865332 2233444555555544 8999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+ +++|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 137 e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~- 211 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG- 211 (311)
T ss_dssp ECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC----
T ss_pred ecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC-
Confidence 999 66999999877777999999999999999999999 8999999999999999999999999999997764322
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
......||+.|+|||++.+ .++.++|||||||++|||++|..|+.... ..........
T Consensus 212 --~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~----~~~~~~~~~~--------------- 269 (311)
T 3p1a_A 212 --AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE----GWQQLRQGYL--------------- 269 (311)
T ss_dssp -----CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH----HHHHHTTTCC---------------
T ss_pred --CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc----HHHHHhccCC---------------
Confidence 2334568999999998875 78999999999999999999977654311 1111111000
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....+..+++++.+++.+||+.||++|||+.|+++
T Consensus 270 ---~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 270 ---PPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp ---CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---CcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 00111235667999999999999999999999985
No 138
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=6.9e-41 Score=344.94 Aligned_cols=259 Identities=24% Similarity=0.408 Sum_probs=196.8
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC---chhhhHHHHHHHHHhCCCccceeeeeeeecCC----e
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG---RVFKSFDVECEMMKSIRHRNIIKVISSCSNEE----F 462 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~----~ 462 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++..... .....+.+|+++++.++||||+++++++...+ .
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46899999999999999999985 5889999999975432 23456889999999999999999999986654 3
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
.++||||+++++|.++++... .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++...
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~ 166 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAI 166 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred cEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence 489999999999999998665 4899999999999999999999 899999999999999999999999999999866
Q ss_pred CCCCCc-ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccccccc
Q 005760 543 TREDQS-TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVD 621 (678)
Q Consensus 543 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (678)
...... .......||+.|+|||.+.+..++.++||||+|+++|||++|+.||.......... .......
T Consensus 167 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~-~~~~~~~--------- 236 (311)
T 3ork_A 167 ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAY-QHVREDP--------- 236 (311)
T ss_dssp ---------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH-HHHHCCC---------
T ss_pred cccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHH-HHhcCCC---------
Confidence 433222 22334568999999999999999999999999999999999999997533221111 1111000
Q ss_pred CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHH-HHHHHHHH
Q 005760 622 PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKE-IVTKLLKI 670 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~e-ll~~L~~~ 670 (678)
.. .......++.++.+++.+||+.||++||++.+ +...+.+.
T Consensus 237 ---~~----~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 237 ---IP----PSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp ---CC----HHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred ---CC----cccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 00 00111235667899999999999999996555 44555444
No 139
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=342.65 Aligned_cols=265 Identities=20% Similarity=0.287 Sum_probs=197.6
Q ss_pred cCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCc-hhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 392 DGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGR-VFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
++|++.+.||+|+||.||+|... +++.||+|++...... ....+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57889999999999999999864 7899999998654322 223455799999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcc
Q 005760 470 MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQST 549 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~ 549 (678)
++ ++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...... ..
T Consensus 82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~--~~ 155 (324)
T 3mtl_A 82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIP--TK 155 (324)
T ss_dssp CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCC--cc
Confidence 97 5999999887777999999999999999999999 999999999999999999999999999999765322 22
Q ss_pred eeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc---CCccccccc----
Q 005760 550 IQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL---PISTKEIVD---- 621 (678)
Q Consensus 550 ~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---- 621 (678)
......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .......... +........
T Consensus 156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 234 (324)
T 3mtl_A 156 TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE-QLHFIFRILGTPTEETWPGILSNEEF 234 (324)
T ss_dssp -------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGCHHH
T ss_pred ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCChHhchhhhcchhh
Confidence 2344568999999998876 568999999999999999999999997633221 1111111000 000000000
Q ss_pred -----CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 622 -----PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 622 -----~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
+..... ........+++++.+++.+||+.||++|||+.|+++
T Consensus 235 ~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 235 KTYNYPKYRAE--ALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HHTCCCCCCCC--CHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cccccccccch--hhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 000000 001111235667899999999999999999999986
No 140
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=5.4e-40 Score=355.01 Aligned_cols=247 Identities=26% Similarity=0.387 Sum_probs=204.5
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|.+.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 467899999999999999999864 89999999997542 23346788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++|+|.+++...+ .+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||++.......
T Consensus 95 ~E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~ 170 (476)
T 2y94_A 95 MEYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170 (476)
T ss_dssp EECCSSEEHHHHTTSSS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence 99999999999997654 4899999999999999999999 9999999999999999999999999999998764322
Q ss_pred CcceeecccCCccccCccccCCCCC-CccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRV-SANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
......||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+..... .......... ..|
T Consensus 171 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~-~~~~i~~~~~-------~~p--- 236 (476)
T 2y94_A 171 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT-LFKKICDGIF-------YTP--- 236 (476)
T ss_dssp ---CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH-HHHHHHTTCC-------CCC---
T ss_pred ---cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH-HHHHHhcCCc-------CCC---
Confidence 2234579999999999988765 689999999999999999999997532211 1111111100 001
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..+++++.+++.+||+.||++|||+.|+++
T Consensus 237 ----------~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 237 ----------QYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp ----------TTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ----------ccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 113455889999999999999999999986
No 141
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=335.02 Aligned_cols=268 Identities=24% Similarity=0.327 Sum_probs=200.3
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC-----chhhhHHHHHHHHHhCC---CccceeeeeeeecC
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG-----RVFKSFDVECEMMKSIR---HRNIIKVISSCSNE 460 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~ 460 (678)
..++|++.+.||+|+||+||+|.. .+++.||+|++..... .....+.+|+.+++.++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 467899999999999999999985 5789999999865421 12346677888877764 99999999998765
Q ss_pred C-----eEEEEEEecCCCCHHHHhhhCCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEE
Q 005760 461 E-----FKALVLEYMPHGSLEKYLHSSNY-ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLS 534 (678)
Q Consensus 461 ~-----~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~ 534 (678)
. ..++||||++ ++|.+++..... .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~ 162 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLA 162 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEEe
Confidence 4 5789999996 599999986643 4899999999999999999999 8999999999999999999999999
Q ss_pred eeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc--
Q 005760 535 DFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL-- 612 (678)
Q Consensus 535 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~-- 612 (678)
|||+++..... .......+|+.|+|||.+.+..++.++||||+||++|||++|+.||......+. .........
T Consensus 163 Dfg~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~i~~~~~~~ 238 (308)
T 3g33_A 163 DFGLARIYSYQ---MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQ-LGKIFDLIGLP 238 (308)
T ss_dssp SCSCTTTSTTC---CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHH-HHHHHHHHCCC
T ss_pred eCccccccCCC---cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHhCCC
Confidence 99999765422 223456789999999999999999999999999999999999999976332211 111111100
Q ss_pred C-Ccccccc---cCccCCccchh-hHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 613 P-ISTKEIV---DPNLLSREDIN-FVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 613 ~-~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
+ ....... ........... ......+++++.+++.+||++||++|||+.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 239 PEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 0 0000000 00000000000 0011235567899999999999999999999986
No 142
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.8e-40 Score=348.85 Aligned_cols=269 Identities=22% Similarity=0.320 Sum_probs=193.1
Q ss_pred HhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecc--cCchhhhHHHHHHHHHhCC-CccceeeeeeeecC--Ce
Q 005760 389 RATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQ--YGRVFKSFDVECEMMKSIR-HRNIIKVISSCSNE--EF 462 (678)
Q Consensus 389 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~--~~ 462 (678)
...++|++.+.||+|+||.||+|.. .+|+.||||++... .......+.+|+.+++.+. ||||+++++++... ..
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 3467899999999999999999985 57999999998543 2234566788999999997 99999999998654 37
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
.|+||||++ ++|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 86 ~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 159 (388)
T 3oz6_A 86 VYLVFDYME-TDLHAVIRAN--ILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSF 159 (388)
T ss_dssp EEEEEECCS-EEHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred EEEEecccC-cCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence 899999997 5999999875 4899999999999999999999 999999999999999999999999999999865
Q ss_pred CCCC-------------------CcceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCcc
Q 005760 543 TRED-------------------QSTIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEM 602 (678)
Q Consensus 543 ~~~~-------------------~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~ 602 (678)
.... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~- 238 (388)
T 3oz6_A 160 VNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMN- 238 (388)
T ss_dssp SSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-
T ss_pred cccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHH-
Confidence 3211 1122344679999999998876 578999999999999999999999997633211
Q ss_pred chhhhhhcccCCcccccc----cC-----------------ccCCccchhhH--------HHHHHHHHHHHHHhhccccC
Q 005760 603 TLKHWVNDWLPISTKEIV----DP-----------------NLLSREDINFV--------AKEQCVSFVFNVAMECTVES 653 (678)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~----~~-----------------~~~~~~~~~~~--------~~~~~~~~l~~l~~~cl~~d 653 (678)
.+..... ....+..+.. .+ ..... ..... ....+++++.+|+.+||+.|
T Consensus 239 ~~~~i~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~d 316 (388)
T 3oz6_A 239 QLERIIG-VIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRD-IFTKWKNLLLKINPKADCNEEALDLLDKLLQFN 316 (388)
T ss_dssp HHHHHHH-HHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSS
T ss_pred HHHHHHH-hcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHH-hCcchhhhcccccccccCCHHHHHHHHHhhccC
Confidence 1111111 0000000000 00 00000 00000 00134667999999999999
Q ss_pred cCCCCCHHHHHHH
Q 005760 654 PEQRINAKEIVTK 666 (678)
Q Consensus 654 P~~Rps~~ell~~ 666 (678)
|++|||+.|+++.
T Consensus 317 P~~R~t~~e~l~H 329 (388)
T 3oz6_A 317 PNKRISANDALKH 329 (388)
T ss_dssp GGGSCCHHHHTTS
T ss_pred cccCCCHHHHhCC
Confidence 9999999999763
No 143
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.4e-40 Score=343.60 Aligned_cols=259 Identities=23% Similarity=0.319 Sum_probs=201.2
Q ss_pred HHHhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecc-----cCchhhhHHHHHHHHHhCCCccceeeeeeeecC
Q 005760 387 LCRATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQ-----YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNE 460 (678)
Q Consensus 387 ~~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 460 (678)
+....++|++.+.||+|+||.||+|.. .+++.||+|++... .....+.+.+|+++++.++||||+++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 455677899999999999999999985 57889999998654 234557889999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHhhhC---------------------------------------CCCCCHHHHHHHHHHHHHH
Q 005760 461 EFKALVLEYMPHGSLEKYLHSS---------------------------------------NYILDIYQRLNIMIDVASA 501 (678)
Q Consensus 461 ~~~~lv~e~~~~~~L~~~l~~~---------------------------------------~~~~~~~~~~~i~~~i~~~ 501 (678)
+..++||||+++|+|.+++... ...+++..++.++.|++.|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998521 1123567788899999999
Q ss_pred HHHHhcCCCCCeEEcCCCCCCeeecCCC--cEEEEeeccccccCCCC--CcceeecccCCccccCccccCC--CCCCccc
Q 005760 502 LEYLHFGYSAQVIHCDLKPSNVLLDDNM--VAHLSDFGIAKLLTRED--QSTIQTQTLATIGYMAPEYGKE--GRVSANG 575 (678)
Q Consensus 502 l~~LH~~~~~~ivH~dl~~~Nill~~~~--~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~--~~~~~~~ 575 (678)
|+||| +++|+||||||+||+++.++ .+||+|||++....... .........+|+.|+|||.+.+ ..++.++
T Consensus 181 l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 257 (345)
T 3hko_A 181 LHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC 257 (345)
T ss_dssp HHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHH
T ss_pred HHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHH
Confidence 99999 89999999999999998776 89999999998654322 1222345679999999998865 6789999
Q ss_pred hHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcC
Q 005760 576 DVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPE 655 (678)
Q Consensus 576 DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~ 655 (678)
|||||||++|||++|+.||......+. .......... ...+ ....+++++.+++.+||+.||+
T Consensus 258 DiwslG~il~el~~g~~pf~~~~~~~~-~~~~~~~~~~-----~~~~-----------~~~~~~~~~~~li~~~l~~~p~ 320 (345)
T 3hko_A 258 DAWSAGVLLHLLLMGAVPFPGVNDADT-ISQVLNKKLC-----FENP-----------NYNVLSPLARDLLSNLLNRNVD 320 (345)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCCC-----TTSG-----------GGGGSCHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCChHHH-HHHHHhcccc-----cCCc-----------ccccCCHHHHHHHHHHcCCChh
Confidence 999999999999999999975332211 1111111000 0000 0112356688999999999999
Q ss_pred CCCCHHHHHH
Q 005760 656 QRINAKEIVT 665 (678)
Q Consensus 656 ~Rps~~ell~ 665 (678)
+||++.|+++
T Consensus 321 ~Rps~~~~l~ 330 (345)
T 3hko_A 321 ERFDAMRALQ 330 (345)
T ss_dssp TSCCHHHHHH
T ss_pred HCCCHHHHhc
Confidence 9999999987
No 144
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=1.9e-40 Score=343.46 Aligned_cols=261 Identities=23% Similarity=0.411 Sum_probs=210.7
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEeC------CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecC
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARLG------DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNE 460 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 460 (678)
....++|++.+.||+|+||.||+|... +++.||+|++..... .....+.+|+.+++.++||||+++++++.+.
T Consensus 21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 100 (322)
T 1p4o_A 21 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 100 (322)
T ss_dssp BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS
T ss_pred cchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccC
Confidence 445678999999999999999999753 468899999865432 3345688999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHhhhCC---------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcE
Q 005760 461 EFKALVLEYMPHGSLEKYLHSSN---------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVA 531 (678)
Q Consensus 461 ~~~~lv~e~~~~~~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~ 531 (678)
+..++||||+++++|.+++...+ ..+++..+..++.|++.||+||| +++|+||||||+||+++.++.+
T Consensus 101 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~~~ 177 (322)
T 1p4o_A 101 QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTV 177 (322)
T ss_dssp SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCE
T ss_pred CccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCCeE
Confidence 99999999999999999997532 34688999999999999999999 8999999999999999999999
Q ss_pred EEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhc
Q 005760 532 HLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVND 610 (678)
Q Consensus 532 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~ 610 (678)
||+|||++................+++.|+|||.+.+..++.++||||+|+++|||++ |..||....... ....+..
T Consensus 178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--~~~~~~~ 255 (322)
T 1p4o_A 178 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ--VLRFVME 255 (322)
T ss_dssp EECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH--HHHHHHT
T ss_pred EECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHH--HHHHHHc
Confidence 9999999976643333333344557889999999998899999999999999999999 888886532211 1111110
Q ss_pred ccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHH
Q 005760 611 WLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIR 671 (678)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~ 671 (678)
... ... +..++.++.+++.+||+.||++|||+.|+++.|+++.
T Consensus 256 ---~~~--------~~~-------~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~ 298 (322)
T 1p4o_A 256 ---GGL--------LDK-------PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM 298 (322)
T ss_dssp ---TCC--------CCC-------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred ---CCc--------CCC-------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence 000 000 0124556889999999999999999999999998764
No 145
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=335.65 Aligned_cols=265 Identities=24% Similarity=0.334 Sum_probs=199.6
Q ss_pred cCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
++|++.+.||+|+||.||+|... +|+.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 57899999999999999999864 699999999855432 234667889999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
|+++++|.+++.... .+++..+..++.|++.|++||| +++|+||||||+||+++.++.+||+|||++.......
T Consensus 83 ~~~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 156 (311)
T 4agu_A 83 YCDHTVLHELDRYQR-GVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPS-- 156 (311)
T ss_dssp CCSEEHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred eCCCchHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc--
Confidence 999999998887554 4899999999999999999999 9999999999999999999999999999998764322
Q ss_pred ceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccch--hhhhhcccC--------C---
Q 005760 549 TIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTL--KHWVNDWLP--------I--- 614 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~--~~~~~~~~~--------~--- 614 (678)
.......+|+.|+|||.+.+ ..++.++||||+|+++|+|++|+.||.+....+... ........+ .
T Consensus 157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (311)
T 4agu_A 157 DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYF 236 (311)
T ss_dssp ---------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGG
T ss_pred cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhccccccccccccccccc
Confidence 22334578999999998876 568999999999999999999999997643221110 000000000 0
Q ss_pred cccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 615 STKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
......++.... ... .....++.++.+++.+||+.||++|||++|+++
T Consensus 237 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 237 SGVKIPDPEDME--PLE-LKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp TTCCCCCCSSCC--CHH-HHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred ccCcCCCccccc--hhh-hhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 000111111110 000 011235667899999999999999999999985
No 146
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=2.2e-39 Score=329.21 Aligned_cols=251 Identities=22% Similarity=0.352 Sum_probs=204.3
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++..... ...+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 57899999999999999999985 4789999999975432 34467889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc---EEEEeeccccccCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV---AHLSDFGIAKLLTR 544 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~---~kl~Dfg~~~~~~~ 544 (678)
||+++++|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++. +||+|||++.....
T Consensus 85 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 160 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 160 (284)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred ecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence 9999999999887664 4899999999999999999999 899999999999999986655 99999999976643
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
.. ......+++.|+|||.+.+..++.++||||+|+++|+|++|+.||........ .......... ...+.
T Consensus 161 ~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~-~~~~~~~~~~-----~~~~~- 230 (284)
T 3kk8_A 161 SE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRL-YAQIKAGAYD-----YPSPE- 230 (284)
T ss_dssp SC---BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHTCCC-----CCTTT-
T ss_pred Cc---cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHH-HHHHHhcccc-----CCchh-
Confidence 22 22346789999999999999999999999999999999999999965322111 1111111000 00000
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
...+++++.+++.+||+.||++|||+.|+++
T Consensus 231 ----------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 231 ----------WDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp ----------TTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ----------hcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0123456889999999999999999999987
No 147
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=6.2e-40 Score=338.75 Aligned_cols=267 Identities=21% Similarity=0.279 Sum_probs=199.4
Q ss_pred hcCCCCC-ccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEEEE
Q 005760 391 TDGFSEN-NLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 391 ~~~~~~~-~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~ 467 (678)
.+.|++. +.||+|+||.||+|.. .+++.||||++........+.+.+|++++.++ +||||+++++++.+.+..++||
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 3567774 7899999999999985 47999999999766555667889999999885 7999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc---EEEEeeccccccCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV---AHLSDFGIAKLLTR 544 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~---~kl~Dfg~~~~~~~ 544 (678)
||+++++|.+++.... .+++..+..++.|++.||+||| +++|+||||||+||+++.++. +||+|||++.....
T Consensus 91 e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 166 (316)
T 2ac3_A 91 EKMRGGSILSHIHKRR-HFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL 166 (316)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred EcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence 9999999999998764 4899999999999999999999 899999999999999988776 99999999876532
Q ss_pred CCC-----cceeecccCCccccCccccCC-----CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhh--hhccc
Q 005760 545 EDQ-----STIQTQTLATIGYMAPEYGKE-----GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHW--VNDWL 612 (678)
Q Consensus 545 ~~~-----~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~--~~~~~ 612 (678)
... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+...... .....
T Consensus 167 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 246 (316)
T 2ac3_A 167 NGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQ 246 (316)
T ss_dssp ---------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHH
T ss_pred CCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHH
Confidence 211 111223469999999998865 458899999999999999999999997643322110000 00000
Q ss_pred CCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 613 PISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
......+..... . ........++.++.+++.+||+.||++|||+.|+++
T Consensus 247 ~~~~~~i~~~~~-~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 247 NMLFESIQEGKY-E---FPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHCCC-C---CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHhccCc-c---cCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 000000000000 0 000011234667899999999999999999999987
No 148
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.3e-39 Score=329.24 Aligned_cols=246 Identities=24% Similarity=0.386 Sum_probs=181.1
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEE
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEE
Confidence 46899999999999999999985 578999999986532 23356788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+ ++++.+++.... .+++..+..++.|++.|+.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 92 ~e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 166 (275)
T 2eue_A 92 IEYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN 166 (275)
T ss_dssp EECC-CEEHHHHHHTSS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCSSCC-------
T ss_pred ehhc-CCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCEEEeecccceeccCcc
Confidence 9999 678888887654 4899999999999999999999 9999999999999999999999999999997654322
Q ss_pred CcceeecccCCccccCccccCCCCC-CccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRV-SANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
......+|+.|+|||.+.+..+ +.++||||+|+++|||++|+.||........ ......... ..+
T Consensus 167 ---~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~-------~~~--- 232 (275)
T 2eue_A 167 ---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVL-FKNISNGVY-------TLP--- 232 (275)
T ss_dssp -----------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHTCC-------CCC---
T ss_pred ---cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCC-------CCC---
Confidence 2234568999999999887765 7899999999999999999999975322110 111111000 000
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..+++++.+++.+||+.||++|||+.|+++
T Consensus 233 ----------~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 233 ----------KFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ----------TTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ----------ccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 113455889999999999999999999976
No 149
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=5.4e-40 Score=332.77 Aligned_cols=247 Identities=25% Similarity=0.364 Sum_probs=200.5
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++.... ......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 46789999999999999999975 467899999986532 22346788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++++|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 88 ~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~- 162 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS- 162 (279)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC----
T ss_pred EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCcc-
Confidence 99999999999998664 4899999999999999999999 999999999999999999999999999998654322
Q ss_pred CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
......+++.|+|||.+.+..++.++||||+|+++|+|++|..||......+ ....+.... ...+
T Consensus 163 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~------~~~~---- 227 (279)
T 3fdn_A 163 ---RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE--TYKRISRVE------FTFP---- 227 (279)
T ss_dssp --------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH--HHHHHHHTC------CCCC----
T ss_pred ---cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH--HHHHHHhCC------CCCC----
Confidence 2234578999999999999899999999999999999999999997532211 111110000 0000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTK 666 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~ 666 (678)
..++.++.+++.+||+.||++|||+.|+++.
T Consensus 228 ---------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 228 ---------DFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp ---------TTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred ---------CcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 1134558899999999999999999999873
No 150
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=2.6e-40 Score=343.19 Aligned_cols=261 Identities=23% Similarity=0.384 Sum_probs=205.8
Q ss_pred hhcCCCCCccccCCCceeEEEEEe------CCCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCe
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL------GDGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEF 462 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~ 462 (678)
..++|++.+.||+|+||.||+|.. .+++.||+|++.... ......+.+|+.+++.++||||+++++++.+.+.
T Consensus 28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 107 (327)
T 2yfx_A 28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 107 (327)
T ss_dssp CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence 357899999999999999999973 357789999986432 2345678899999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHhhhCC------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC---CCcEEE
Q 005760 463 KALVLEYMPHGSLEKYLHSSN------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD---NMVAHL 533 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~---~~~~kl 533 (678)
.++||||+++++|.+++.... ..+++..++.++.|++.||.||| +.+|+||||||+||+++. +..+||
T Consensus 108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl 184 (327)
T 2yfx_A 108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKI 184 (327)
T ss_dssp CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEE
Confidence 999999999999999998654 34889999999999999999999 899999999999999984 456999
Q ss_pred EeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhccc
Q 005760 534 SDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWL 612 (678)
Q Consensus 534 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~ 612 (678)
+|||++................+++.|+|||.+.+..++.++||||||+++|||++ |..||...... .....+....
T Consensus 185 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~~~~ 262 (327)
T 2yfx_A 185 GDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVLEFVTSGG 262 (327)
T ss_dssp CCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHTTC
T ss_pred CccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH--HHHHHHhcCC
Confidence 99999976543333333345568899999999988899999999999999999998 88998653221 1111111100
Q ss_pred CCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 613 PISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
. +.. +..++..+.+++.+||+.||++||++.|+++.|+.+...
T Consensus 263 ~--------~~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 263 R--------MDP----------PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp C--------CCC----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred C--------CCC----------CCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 0 000 012345688999999999999999999999999988653
No 151
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=4.2e-40 Score=335.78 Aligned_cols=261 Identities=23% Similarity=0.356 Sum_probs=207.4
Q ss_pred hhcCCCCCc-cccCCCceeEEEEEe---CCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeE
Q 005760 390 ATDGFSENN-LIGRGSFGSVFKARL---GDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFK 463 (678)
Q Consensus 390 ~~~~~~~~~-~ig~G~~g~V~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 463 (678)
..++|.+.+ .||+|+||.||+|.+ .+++.||+|++.... ....+.+.+|+++++.++||||+++++++ +.+..
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~ 92 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW 92 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence 345777777 999999999999953 357889999996543 23357789999999999999999999999 55678
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
++||||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 93 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (291)
T 1xbb_A 93 MLVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALR 168 (291)
T ss_dssp EEEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEEeCCCCCHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence 89999999999999998764 4899999999999999999999 8999999999999999999999999999998765
Q ss_pred CCCCc-ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCccccccc
Q 005760 544 REDQS-TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVD 621 (678)
Q Consensus 544 ~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (678)
..... .......+++.|+|||.+.+..++.++||||||+++|||++ |+.||...... .....+.....
T Consensus 169 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~~~~-------- 238 (291)
T 1xbb_A 169 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKGER-------- 238 (291)
T ss_dssp TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCC--------
T ss_pred cCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHcCCC--------
Confidence 43222 12233456788999999988889999999999999999999 99998753321 11111111000
Q ss_pred CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 622 PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
+.. +..+++++.+++.+||+.||++||++.|+++.|+++..+..
T Consensus 239 ~~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 282 (291)
T 1xbb_A 239 MGC----------PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV 282 (291)
T ss_dssp CCC----------CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCC----------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 000 01245668899999999999999999999999999987643
No 152
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1.7e-39 Score=351.80 Aligned_cols=261 Identities=23% Similarity=0.261 Sum_probs=195.6
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecc--cCchhhhHHHHHHHHHhCCCccceeeeeeeecC------C
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQ--YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNE------E 461 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------~ 461 (678)
.++|++.+.||+|+||.||+|.. .+++.||||++... .....+.+.+|+.+++.++||||+++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 57899999999999999999975 47899999999754 223456788999999999999999999998654 4
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..|+||||+++ ++.+.+.. .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~ 213 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLART 213 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC--
T ss_pred eEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEeeee
Confidence 67999999976 57776653 3889999999999999999999 89999999999999999999999999999986
Q ss_pred cCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhc-----------
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVND----------- 610 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~----------- 610 (678)
... ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+....+. +...+..
T Consensus 214 ~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~-~~~i~~~lg~p~~~~~~~ 289 (464)
T 3ttj_A 214 AGT---SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQ-WNKVIEQLGTPCPEFMKK 289 (464)
T ss_dssp ------CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHHHCSCCHHHHTT
T ss_pred cCC---CcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHhcCCCCHHHHHH
Confidence 543 2223456799999999999999999999999999999999999999976322110 0000000
Q ss_pred -------ccC-------CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 611 -------WLP-------ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 611 -------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
+.. ............. .........++++.+|+.+||++||++|||++|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 290 LQPTVRNYVENRPKYAGLTFPKLFPDSLFP---ADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp SCHHHHHHHTTSCCCCCCCHHHHSCGGGSC---CSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cchhhhhHhhcccccCCCChHHhCcccccc---cccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 000 0000000000000 001112234677999999999999999999999986
No 153
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=2.4e-40 Score=335.15 Aligned_cols=252 Identities=28% Similarity=0.435 Sum_probs=199.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeec-CCeEEEEEEe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSN-EEFKALVLEY 469 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~ 469 (678)
.++|++.+.||+|+||.||+|.. +|+.||+|++... ...+.+.+|+++++.++||||+++++++.+ .+..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 46789999999999999999987 4889999998643 245778999999999999999999998754 4578999999
Q ss_pred cCCCCHHHHhhhCCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 470 MPHGSLEKYLHSSNY-ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
+++++|.+++..... .+++..+..++.|++.|++||| +++++||||||+||+++.++.+||+|||++......
T Consensus 97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~--- 170 (278)
T 1byg_A 97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--- 170 (278)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeecccccccccc---
Confidence 999999999976532 3788899999999999999999 899999999999999999999999999998754322
Q ss_pred ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.....+++.|+|||.+.+..++.++||||+|+++|||++ |..||......+ ....+.... .+..
T Consensus 171 --~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~--~~~~~~~~~--------~~~~--- 235 (278)
T 1byg_A 171 --QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKGY--------KMDA--- 235 (278)
T ss_dssp -------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG--HHHHHTTTC--------CCCC---
T ss_pred --ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHhcCC--------CCCC---
Confidence 123357889999999988899999999999999999998 999987532211 111111000 0000
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
+..+++++.+++.+||+.||++||++.|+++.|++++..
T Consensus 236 -------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 236 -------PDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp -------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -------cccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 012456688999999999999999999999999999865
No 154
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=3.1e-39 Score=327.94 Aligned_cols=256 Identities=24% Similarity=0.327 Sum_probs=205.2
Q ss_pred cCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC------chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG------RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 56889999999999999999865 799999999865422 13567899999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC----cEEEEeecccc
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM----VAHLSDFGIAK 540 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~----~~kl~Dfg~~~ 540 (678)
+||||+++++|.+++.... .+++..+..++.|++.||.||| +++++||||||+||+++.++ .+||+|||++.
T Consensus 85 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~ 160 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH 160 (283)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred EEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence 9999999999999997654 4899999999999999999999 89999999999999998877 89999999998
Q ss_pred ccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccc
Q 005760 541 LLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIV 620 (678)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (678)
...... ......+++.|+|||.+.+..++.++||||+|+++|+|++|+.||......+ ..........
T Consensus 161 ~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~-------- 228 (283)
T 3bhy_A 161 KIEAGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQE-TLTNISAVNY-------- 228 (283)
T ss_dssp ECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTTCC--------
T ss_pred eccCCC---cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHH-HHHHhHhccc--------
Confidence 664322 2234568999999999998899999999999999999999999997532211 1111100000
Q ss_pred cCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH--HHHHHH
Q 005760 621 DPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT--KLLKIR 671 (678)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~--~L~~~~ 671 (678)
.........++..+.+++.+||+.||++||++.|+++ .++.++
T Consensus 229 --------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~ 273 (283)
T 3bhy_A 229 --------DFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIR 273 (283)
T ss_dssp --------CCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred --------CCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHH
Confidence 0001111234566889999999999999999999997 455554
No 155
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1e-39 Score=340.78 Aligned_cols=246 Identities=28% Similarity=0.390 Sum_probs=200.5
Q ss_pred cCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC---chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG---RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
+.|+..+.||+|+||.||+|.. .+++.||||++..... ...+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4588889999999999999985 5899999999975432 23467889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+. |++.+++......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++......
T Consensus 134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-- 207 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-- 207 (348)
T ss_dssp ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB--
T ss_pred ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC--
Confidence 9997 5898888766667999999999999999999999 899999999999999999999999999999765322
Q ss_pred cceeecccCCccccCccccC---CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 548 STIQTQTLATIGYMAPEYGK---EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
....||+.|+|||++. .+.++.++|||||||++|||++|+.||....... ......... .+..
T Consensus 208 ----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~-~~~~~~~~~---------~~~~ 273 (348)
T 1u5q_A 208 ----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNE---------SPAL 273 (348)
T ss_dssp ----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSC---------CCCC
T ss_pred ----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHhcC---------CCCC
Confidence 2456899999999874 5678999999999999999999999986532211 111111110 0100
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTK 666 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~ 666 (678)
.. ..++..+.+++.+||+.||++|||+.|+++.
T Consensus 274 ~~---------~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 274 QS---------GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp CC---------TTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred CC---------CCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 00 1234558899999999999999999999853
No 156
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=5.6e-39 Score=336.63 Aligned_cols=271 Identities=21% Similarity=0.326 Sum_probs=204.2
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeec--------
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSN-------- 459 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-------- 459 (678)
.++|++.+.||+|+||.||+|.. .+|+.||+|++..... .....+.+|+.+++.++||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 46899999999999999999986 5899999999855432 234567899999999999999999999876
Q ss_pred CCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccc
Q 005760 460 EEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIA 539 (678)
Q Consensus 460 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~ 539 (678)
.+..++||||+++ +|.+.+......+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 171 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLA 171 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchhc
Confidence 3468999999975 888888776667999999999999999999999 999999999999999999999999999999
Q ss_pred cccCCCC--CcceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccc--hhhhhhcccCC
Q 005760 540 KLLTRED--QSTIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT--LKHWVNDWLPI 614 (678)
Q Consensus 540 ~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~--~~~~~~~~~~~ 614 (678)
+...... .........+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....... .........+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~ 251 (351)
T 3mi9_A 172 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPE 251 (351)
T ss_dssp EECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTT
T ss_pred ccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChh
Confidence 8764322 2223345678999999998876 45799999999999999999999999763322110 00000111111
Q ss_pred cccccccC---------ccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 615 STKEIVDP---------NLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 615 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
........ ................++++.+++.+||+.||++|||++|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 252 VWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp TSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 11100000 0000011111111223567899999999999999999999986
No 157
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.7e-39 Score=330.15 Aligned_cols=250 Identities=27% Similarity=0.365 Sum_probs=197.5
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
.++|.+.+.||+|+||.||+|.. .++..||+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 46789999999999999999985 4789999999976543 345778899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee---cCCCcEEEEeecccccc
Q 005760 469 YMPHGSLEKYLHSS---NYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 469 ~~~~~~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill---~~~~~~kl~Dfg~~~~~ 542 (678)
|+++++|.+++... ...+++..+..++.|++.||+||| +++|+||||||+||++ +.++.+||+|||++...
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~ 177 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence 99999999988543 346899999999999999999999 9999999999999999 55688999999999765
Q ss_pred CCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccC
Q 005760 543 TREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDP 622 (678)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (678)
... .......+++.|+|||.+. +.++.++||||+|+++|||++|+.||......+. ........+
T Consensus 178 ~~~---~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~--~~~~~~~~~--------- 242 (285)
T 3is5_A 178 KSD---EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEV--QQKATYKEP--------- 242 (285)
T ss_dssp ------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHCCC---------
T ss_pred CCc---ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHH--HhhhccCCc---------
Confidence 432 2234556899999999875 5688999999999999999999999975332211 111110000
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 623 NLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.... . ....++++.+++.+||+.||++|||+.|+++
T Consensus 243 ~~~~-~------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 243 NYAV-E------CRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp CCCC---------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred cccc-c------cCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0000 0 0012455889999999999999999999985
No 158
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=2.9e-39 Score=346.22 Aligned_cols=253 Identities=23% Similarity=0.284 Sum_probs=194.1
Q ss_pred HhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc--------CchhhhHHHHHHHHHhCCCccceeeeeeeec
Q 005760 389 RATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY--------GRVFKSFDVECEMMKSIRHRNIIKVISSCSN 459 (678)
Q Consensus 389 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~ 459 (678)
...++|.+.+.||+|+||.||+|.. .+++.||+|++.... ......+.+|+++++.++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 3567899999999999999999975 478999999997532 1223468899999999999999999999865
Q ss_pred CCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCC---CcEEEEee
Q 005760 460 EEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDN---MVAHLSDF 536 (678)
Q Consensus 460 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~---~~~kl~Df 536 (678)
. ..++||||+++|+|.+++.... .+++..+..++.|++.||+||| +++|+||||||+||+++.+ +.+||+||
T Consensus 212 ~-~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~DF 286 (419)
T 3i6u_A 212 E-DYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDF 286 (419)
T ss_dssp S-EEEEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECCS
T ss_pred C-ceEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEeec
Confidence 4 5789999999999999987654 4899999999999999999999 8999999999999999754 45999999
Q ss_pred ccccccCCCCCcceeecccCCccccCccccCC---CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC
Q 005760 537 GIAKLLTREDQSTIQTQTLATIGYMAPEYGKE---GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP 613 (678)
Q Consensus 537 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~ 613 (678)
|+++..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...................
T Consensus 287 G~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~ 363 (419)
T 3i6u_A 287 GHSKILGET---SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYN 363 (419)
T ss_dssp STTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCC
T ss_pred ccceecCCC---ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCC
Confidence 999876432 22334679999999998853 567889999999999999999999997633322211111110000
Q ss_pred CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 614 ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
........+++++.+++.+||+.||++|||+.|+++
T Consensus 364 ----------------~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 364 ----------------FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp ----------------CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred ----------------CCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 000011234667899999999999999999999986
No 159
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=4.3e-40 Score=341.60 Aligned_cols=258 Identities=28% Similarity=0.451 Sum_probs=205.3
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcE--EEEEEeecc-cCchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGME--VAMKVFNLQ-YGRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~--vavK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~l 465 (678)
.++|++.+.||+|+||.||+|... ++.. ||+|.+... .....+.+.+|+++++.+ +||||+++++++.+.+..++
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l 103 (327)
T 1fvr_A 24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 103 (327)
T ss_dssp GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence 367899999999999999999853 5664 499988643 233456788999999999 89999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc
Q 005760 466 VLEYMPHGSLEKYLHSSN---------------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV 530 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~ 530 (678)
||||+++++|.+++.... ..+++..++.++.|++.||+||| +++|+||||||+||+++.++.
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYV 180 (327)
T ss_dssp EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGC
T ss_pred EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCe
Confidence 999999999999997654 35899999999999999999999 999999999999999999999
Q ss_pred EEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhh
Q 005760 531 AHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVN 609 (678)
Q Consensus 531 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~ 609 (678)
+||+|||+++.... ........+++.|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+.
T Consensus 181 ~kL~Dfg~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~--~~~~~~ 255 (327)
T 1fvr_A 181 AKIADFGLSRGQEV---YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE--LYEKLP 255 (327)
T ss_dssp EEECCTTCEESSCE---ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHGG
T ss_pred EEEcccCcCccccc---cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH--HHHHhh
Confidence 99999999874321 112233457889999999988889999999999999999998 999986532211 111111
Q ss_pred cccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 610 DWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
... .... +..+++++.+++.+||+.||++|||+.|+++.|+++.+..
T Consensus 256 ~~~--------~~~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 302 (327)
T 1fvr_A 256 QGY--------RLEK----------PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER 302 (327)
T ss_dssp GTC--------CCCC----------CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred cCC--------CCCC----------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhh
Confidence 000 0000 0123456889999999999999999999999999987653
No 160
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=3.8e-40 Score=346.33 Aligned_cols=248 Identities=24% Similarity=0.279 Sum_probs=193.0
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC---chhhhHHHHHHH-HHhCCCccceeeeeeeecCCeEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG---RVFKSFDVECEM-MKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~-l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
.++|++.+.||+|+||.||+|+.+ +++.||+|++..... .....+..|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 467899999999999999999864 688999999975432 233455666665 567899999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
||||+++|+|.+++.+.+ .+++..+..++.||+.||+||| +++|+||||||+||+++.+|++||+|||+++.....
T Consensus 117 v~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~ 192 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH 192 (373)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCC
T ss_pred EEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCccccccccC
Confidence 999999999999998755 4888999999999999999999 999999999999999999999999999999754222
Q ss_pred CCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
........||+.|+|||++.+..++.++||||+||++|||++|..||......+ ......... ..-+
T Consensus 193 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~-~~~~i~~~~-------~~~~--- 259 (373)
T 2r5t_A 193 --NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE-MYDNILNKP-------LQLK--- 259 (373)
T ss_dssp --CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHH-HHHHHHHSC-------CCCC---
T ss_pred --CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHhcc-------cCCC---
Confidence 222345679999999999999999999999999999999999999997532211 111111100 0000
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..++.++.+++.+||+.||++||++.+.++
T Consensus 260 ----------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~ 289 (373)
T 2r5t_A 260 ----------PNITNSARHLLEGLLQKDRTKRLGAKDDFM 289 (373)
T ss_dssp ----------SSSCHHHHHHHHHHTCSSGGGSTTTTTTHH
T ss_pred ----------CCCCHHHHHHHHHHcccCHHhCCCCCCCHH
Confidence 113455889999999999999999864333
No 161
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=8.2e-40 Score=339.57 Aligned_cols=272 Identities=21% Similarity=0.276 Sum_probs=196.8
Q ss_pred HHHHHhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCC
Q 005760 385 LELCRATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEE 461 (678)
Q Consensus 385 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~ 461 (678)
.......++|++.+.||+|+||.||+|.. .+++.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+
T Consensus 27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 106 (329)
T 3gbz_A 27 APSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNH 106 (329)
T ss_dssp -----CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETT
T ss_pred CCcccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCC
Confidence 34455678899999999999999999974 4789999999865432 23456778999999999999999999999999
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec-----CCCcEEEEee
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD-----DNMVAHLSDF 536 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~-----~~~~~kl~Df 536 (678)
..++||||+++ +|.+++..... +++..+..++.||+.||+||| +++|+||||||+||+++ .++.+||+||
T Consensus 107 ~~~lv~e~~~~-~L~~~~~~~~~-~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Df 181 (329)
T 3gbz_A 107 RLHLIFEYAEN-DLKKYMDKNPD-VSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDF 181 (329)
T ss_dssp EEEEEEECCSE-EHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCT
T ss_pred EEEEEEecCCC-CHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcC
Confidence 99999999975 99999987654 899999999999999999999 89999999999999994 5556999999
Q ss_pred ccccccCCCCCcceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcc--cC
Q 005760 537 GIAKLLTREDQSTIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDW--LP 613 (678)
Q Consensus 537 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~--~~ 613 (678)
|+++..... ........+|+.|+|||++.+. .++.++||||+||++|||++|+.||......+. ........ ..
T Consensus 182 g~a~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~~~ 258 (329)
T 3gbz_A 182 GLARAFGIP--IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQ-LFKIFEVLGLPD 258 (329)
T ss_dssp THHHHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHHHCCCC
T ss_pred CCccccCCc--ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHH-HHHHHHHhCCCc
Confidence 999876432 1223445689999999998775 489999999999999999999999976332211 11111100 00
Q ss_pred C-ccc------cc--ccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 614 I-STK------EI--VDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 614 ~-~~~------~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. ... .+ ..+... ...........++.++.+++.+||+.||++|||+.|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 259 DTTWPGVTALPDWKQSFPKFR-GKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp TTTSTTGGGSTTCCTTCCCCC-CCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhhhhc-cccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 0 000 00 000000 011111112235677899999999999999999999985
No 162
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.8e-39 Score=332.46 Aligned_cols=263 Identities=22% Similarity=0.278 Sum_probs=200.7
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC---chhhhHHHHHHHHHhCCCccceeeeeeeecCCeE
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG---RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFK 463 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 463 (678)
....++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|+.+++.++||||+++++++.+.+..
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~ 109 (309)
T 2h34_A 30 GTQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQL 109 (309)
T ss_dssp ----CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEE
T ss_pred CcEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeE
Confidence 344578999999999999999999864 789999999865422 2346788999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
++||||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 110 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 185 (309)
T 2h34_A 110 YVDMRLINGVDLAAMLRRQG-PLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATT 185 (309)
T ss_dssp EEEEECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC-----
T ss_pred EEEEEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCcccc
Confidence 99999999999999998754 4899999999999999999999 8999999999999999999999999999997654
Q ss_pred CCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 544 REDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
... ........+++.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+....+ .+.
T Consensus 186 ~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~-------~~~ 255 (309)
T 2h34_A 186 DEK-LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQAIP-------RPS 255 (309)
T ss_dssp ------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSCCC-------CGG
T ss_pred ccc-cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccCCC-------Ccc
Confidence 322 12233456899999999999989999999999999999999999999753221 11111111000 000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCC-CHHHHHHHHHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRI-NAKEIVTKLLKIRDS 673 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-s~~ell~~L~~~~~~ 673 (678)
. .+..++.++.+++.+||+.||++|| +++++++.|+++.+.
T Consensus 256 ~---------~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~ 297 (309)
T 2h34_A 256 T---------VRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALAT 297 (309)
T ss_dssp G---------TSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC-
T ss_pred c---------cCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHh
Confidence 0 0112445688999999999999999 999999999987543
No 163
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=1.2e-39 Score=356.70 Aligned_cols=250 Identities=22% Similarity=0.330 Sum_probs=205.7
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|..+ +|+.||+|++.... ......+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467899999999999999999864 79999999996532 23446678999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 467 LEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
|||+++|+|.+++.... ..+++..+..++.||+.||+||| +++|+||||||+||+++.+|.+||+|||+++.....
T Consensus 263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~ 339 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 339 (576)
T ss_dssp ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence 99999999999997654 34899999999999999999999 899999999999999999999999999999876432
Q ss_pred CCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCcc--chhhhhhcccCCcccccccCc
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEM--TLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 623 (678)
. ......||+.|+|||++.+..++.++||||+||++|||++|+.||........ .....+.... ..
T Consensus 340 ~---~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~-~~-------- 407 (576)
T 2acx_A 340 Q---TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVP-EE-------- 407 (576)
T ss_dssp C---CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCC-CC--------
T ss_pred c---cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhccc-cc--------
Confidence 2 23345799999999999998999999999999999999999999976433211 1111111100 00
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCC-----CHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRI-----NAKEIVT 665 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~ell~ 665 (678)
.. ..+++++.+++.+||+.||++|| ++.|+++
T Consensus 408 -~p---------~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 408 -YS---------ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp -CC---------TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred -CC---------ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 00 12345688999999999999999 7888875
No 164
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=1.5e-40 Score=366.85 Aligned_cols=256 Identities=26% Similarity=0.440 Sum_probs=209.3
Q ss_pred hhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEe
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
..++|++.+.||+|+||.||+|.+.++..||||++.... ...+.+.+|+++++.++||||+++++++.+ +..++||||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~ 342 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 342 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence 456788899999999999999998888889999997543 234678999999999999999999999876 678999999
Q ss_pred cCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 470 MPHGSLEKYLHSS-NYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 470 ~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
+++|+|.++++.. ...+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++...... .
T Consensus 343 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~ 418 (535)
T 2h8h_A 343 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-Y 418 (535)
T ss_dssp CTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-H
T ss_pred hcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-e
Confidence 9999999999753 235889999999999999999999 9999999999999999999999999999997654221 1
Q ss_pred ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
.......++..|+|||.+.++.++.++|||||||++|||++ |+.||.+....+ ....+..... ..
T Consensus 419 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~--~~~~i~~~~~-----~~------- 484 (535)
T 2h8h_A 419 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERGYR-----MP------- 484 (535)
T ss_dssp HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH--HHHHHHTTCC-----CC-------
T ss_pred ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCCC-----CC-------
Confidence 12234457789999999998899999999999999999999 899987533221 1111110000 00
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIR 671 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~ 671 (678)
.+..++.++.++|.+||+.||++|||+.++++.|+.+.
T Consensus 485 ------~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 485 ------CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 522 (535)
T ss_dssp ------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred ------CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 01134566899999999999999999999999998764
No 165
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=2.7e-40 Score=349.90 Aligned_cols=249 Identities=15% Similarity=0.179 Sum_probs=193.9
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecc---cCchhhhHHHHHH---HHHhCCCccceeee-------ee
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQ---YGRVFKSFDVECE---MMKSIRHRNIIKVI-------SS 456 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~~---~l~~l~h~niv~~~-------~~ 456 (678)
.++|++.+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+. .++.++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46788899999999999999985 57999999999743 3345577889994 55556899999998 55
Q ss_pred eecCC-----------------eEEEEEEecCCCCHHHHhhhCCCC------CCHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 005760 457 CSNEE-----------------FKALVLEYMPHGSLEKYLHSSNYI------LDIYQRLNIMIDVASALEYLHFGYSAQV 513 (678)
Q Consensus 457 ~~~~~-----------------~~~lv~e~~~~~~L~~~l~~~~~~------~~~~~~~~i~~~i~~~l~~LH~~~~~~i 513 (678)
+.+++ ..++||||+ +|+|.+++...... +++..+..++.||+.||+||| +++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence 55443 378999999 67999999864322 225788889999999999999 8999
Q ss_pred EEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCC-----------CCCccchHHHHHH
Q 005760 514 IHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEG-----------RVSANGDVYSFGI 582 (678)
Q Consensus 514 vH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----------~~~~~~DvwslGv 582 (678)
+||||||+||+++.++.+||+|||+++.... ......| +.|+|||++.+. .++.++|||||||
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~ 301 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL 301 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHH
Confidence 9999999999999999999999999985321 2344567 999999999887 8999999999999
Q ss_pred HHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHH
Q 005760 583 MLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKE 662 (678)
Q Consensus 583 ~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~e 662 (678)
++|||++|+.||......... .. +.. .. ..+++++.+++.+||+.||++|||+.|
T Consensus 302 il~elltg~~Pf~~~~~~~~~-~~------------~~~-~~-----------~~~~~~~~~li~~~L~~dp~~Rpt~~e 356 (377)
T 3byv_A 302 VIYWIWCADLPITKDAALGGS-EW------------IFR-SC-----------KNIPQPVRALLEGFLRYPKEDRLLPLQ 356 (377)
T ss_dssp HHHHHHHSSCCC------CCS-GG------------GGS-SC-----------CCCCHHHHHHHHHHTCSSGGGCCCHHH
T ss_pred HHHHHHHCCCCCcccccccch-hh------------hhh-hc-----------cCCCHHHHHHHHHHcCCCchhCCCHHH
Confidence 999999999999653322111 00 000 00 123456889999999999999999999
Q ss_pred HHH--HHHHHHHHH
Q 005760 663 IVT--KLLKIRDSL 674 (678)
Q Consensus 663 ll~--~L~~~~~~~ 674 (678)
+++ .++.+.+..
T Consensus 357 ~l~hp~f~~~~~~~ 370 (377)
T 3byv_A 357 AMETPEYEQLRTEL 370 (377)
T ss_dssp HHTSHHHHHHHHHH
T ss_pred HhhChHHHHHHHHH
Confidence 996 666665543
No 166
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.8e-39 Score=352.79 Aligned_cols=195 Identities=25% Similarity=0.372 Sum_probs=154.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeec-----CCe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSN-----EEF 462 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-----~~~ 462 (678)
.++|++.+.||+|+||.||+|... +++.||||++..... ...+.+.+|+++++.++||||+++++++.. ...
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 468999999999999999999754 789999999864322 345678899999999999999999999843 357
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
.|+||||+ +++|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++..
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~ 206 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTPV-YLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTV 206 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred EEEEEecc-ccchhhhcccCC-CCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchhc
Confidence 89999998 569999997654 5899999999999999999999 899999999999999999999999999999876
Q ss_pred CCCCCc-------------------------ceeecccCCccccCcccc-CCCCCCccchHHHHHHHHHHHHcC
Q 005760 543 TREDQS-------------------------TIQTQTLATIGYMAPEYG-KEGRVSANGDVYSFGIMLMETFTR 590 (678)
Q Consensus 543 ~~~~~~-------------------------~~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwslGv~l~ell~g 590 (678)
...... .......||+.|+|||++ .+..++.++||||+||++|||++|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 207 DYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred cCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 432111 123456789999999975 566799999999999999999994
No 167
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=2.3e-39 Score=348.67 Aligned_cols=201 Identities=25% Similarity=0.367 Sum_probs=168.1
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecC-----C
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNE-----E 461 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-----~ 461 (678)
..++|++.+.||+|+||.||+|.. .+++.||||++..... ...+.+.+|+++++.++||||+++++++... +
T Consensus 24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 357899999999999999999985 4789999999965322 3446788999999999999999999998765 5
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..|+||||++ ++|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~~-~~L~~~~~~~~-~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~ 178 (432)
T 3n9x_A 104 ELYIVLEIAD-SDLKKLFKTPI-FLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLART 178 (432)
T ss_dssp CEEEEEECCS-EEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEecCC-cCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCccc
Confidence 7899999996 59999997654 4899999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCCCc--------------------ceeecccCCccccCcccc-CCCCCCccchHHHHHHHHHHHHcCCCCCC
Q 005760 542 LTREDQS--------------------TIQTQTLATIGYMAPEYG-KEGRVSANGDVYSFGIMLMETFTRKKPTD 595 (678)
Q Consensus 542 ~~~~~~~--------------------~~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwslGv~l~ell~g~~p~~ 595 (678)
....... .......||+.|+|||++ ....++.++||||+||++|||++|..||.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 179 INSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp C-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred ccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 6433211 123567899999999975 56679999999999999999998766654
No 168
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=6.5e-39 Score=341.14 Aligned_cols=249 Identities=22% Similarity=0.300 Sum_probs=191.0
Q ss_pred cCCCCC-ccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHH-hCCCccceeeeeeeec----CCeEE
Q 005760 392 DGFSEN-NLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMK-SIRHRNIIKVISSCSN----EEFKA 464 (678)
Q Consensus 392 ~~~~~~-~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~-~l~h~niv~~~~~~~~----~~~~~ 464 (678)
++|.+. +.||+|+||.||+|... +++.||||++.. ...+.+|++++. ..+||||+++++++.. .+..+
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 456665 68999999999999854 789999999863 245677888874 5589999999998865 56789
Q ss_pred EEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC---CCcEEEEeecccc
Q 005760 465 LVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD---NMVAHLSDFGIAK 540 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~---~~~~kl~Dfg~~~ 540 (678)
+||||+++|+|.+++.... ..+++..+..++.||+.||.||| +.+|+||||||+||+++. ++.+||+|||+++
T Consensus 136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~ 212 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 212 (400)
T ss_dssp EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEeccccc
Confidence 9999999999999998653 35899999999999999999999 899999999999999987 7899999999998
Q ss_pred ccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccc--hhhhhhcccCCcccc
Q 005760 541 LLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT--LKHWVNDWLPISTKE 618 (678)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~ 618 (678)
..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......... ....+.... ..
T Consensus 213 ~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~----~~ 285 (400)
T 1nxk_A 213 ETTSH---NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQ----YE 285 (400)
T ss_dssp ECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTC----CC
T ss_pred ccCCC---CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCc----cc
Confidence 65422 2234567899999999999999999999999999999999999999764332211 111111000 00
Q ss_pred cccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHH
Q 005760 619 IVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTK 666 (678)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~ 666 (678)
...+ ....++.++.+++.+||+.||++|||+.|+++.
T Consensus 286 ~~~~-----------~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 286 FPNP-----------EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp CCTT-----------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred CCCc-----------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000 001245668899999999999999999999873
No 169
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.3e-39 Score=340.42 Aligned_cols=270 Identities=23% Similarity=0.307 Sum_probs=200.0
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC-----chhhhHHHHHHHHHhCCCccceeeeeeeecCC
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG-----RVFKSFDVECEMMKSIRHRNIIKVISSCSNEE 461 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~ 461 (678)
....++|++.+.||+|+||.||+|... +|+.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+
T Consensus 6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 85 (346)
T 1ua2_A 6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS 85 (346)
T ss_dssp -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC
Confidence 445678999999999999999999864 689999999864322 12356789999999999999999999999999
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..++||||+++ +|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 86 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (346)
T 1ua2_A 86 NISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKS 161 (346)
T ss_dssp CCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred ceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEeccccee
Confidence 99999999976 899999877667888999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCCCcceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc---CCccc
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL---PISTK 617 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~ 617 (678)
..... .......+|+.|+|||.+.+. .++.++||||+||++|||++|.+||.+....+ .+........ .....
T Consensus 162 ~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~ 238 (346)
T 1ua2_A 162 FGSPN--RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD-QLTRIFETLGTPTEEQWP 238 (346)
T ss_dssp TTSCC--CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTTSS
T ss_pred ccCCc--ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHcCCCChhhhh
Confidence 64322 223456789999999988664 48899999999999999999999986533211 1111111100 00000
Q ss_pred c---cccC---ccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 618 E---IVDP---NLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 618 ~---~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. ..+. ......... .....++.++.+++.+||+.||++|||+.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 239 DMCSLPDYVTFKSFPGIPLH-HIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp STTSSTTCCCCCCCCCCCHH-HHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred hhccCcccccccccCCCChH-HhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0 0000 000000000 001234567999999999999999999999986
No 170
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.9e-39 Score=340.05 Aligned_cols=206 Identities=27% Similarity=0.356 Sum_probs=179.3
Q ss_pred cCCHHHHHHhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCC-----Cccceeee
Q 005760 381 MFSYLELCRATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-----HRNIIKVI 454 (678)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~~~ 454 (678)
.+++.+.....++|++.+.||+|+||.||+|.. .+++.||||++... ......+..|+.+++.++ ||||++++
T Consensus 24 ~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~ 102 (360)
T 3llt_A 24 HFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYH 102 (360)
T ss_dssp SCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred eeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence 345555555678999999999999999999986 57899999998642 233456778999999986 99999999
Q ss_pred eeeecCCeEEEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC------
Q 005760 455 SSCSNEEFKALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD------ 527 (678)
Q Consensus 455 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~------ 527 (678)
+++...+..++||||+ +++|.+++.... ..+++..+..++.||+.||+||| +++|+||||||+||+++.
T Consensus 103 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~ 178 (360)
T 3llt_A 103 GKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKS 178 (360)
T ss_dssp EEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEE
T ss_pred ceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEcccccccc
Confidence 9999999999999999 889999998654 35889999999999999999999 999999999999999975
Q ss_pred -------------------CCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHH
Q 005760 528 -------------------NMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETF 588 (678)
Q Consensus 528 -------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell 588 (678)
++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell 253 (360)
T 3llt_A 179 LITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY-----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELY 253 (360)
T ss_dssp EEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC-----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHH
T ss_pred ccchhcccccccccccccCCCCEEEEeccCceecCCC-----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHH
Confidence 889999999999764322 23457899999999999999999999999999999999
Q ss_pred cCCCCCCc
Q 005760 589 TRKKPTDE 596 (678)
Q Consensus 589 ~g~~p~~~ 596 (678)
+|+.||..
T Consensus 254 ~g~~pf~~ 261 (360)
T 3llt_A 254 TGSLLFRT 261 (360)
T ss_dssp HSSCSCCC
T ss_pred HCCCCCCC
Confidence 99999975
No 171
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=2.6e-39 Score=328.60 Aligned_cols=250 Identities=25% Similarity=0.393 Sum_probs=204.6
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeec----------
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSN---------- 459 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~---------- 459 (678)
.++|++.+.||+|+||.||+|... +++.||+|++.... +.+.+|+++++.++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 457889999999999999999865 79999999997542 456789999999999999999998754
Q ss_pred ------CCeEEEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEE
Q 005760 460 ------EEFKALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAH 532 (678)
Q Consensus 460 ------~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~k 532 (678)
....++||||+++++|.+++.... ..+++..++.++.|++.||.||| +++|+||||||+||+++.++.+|
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~k 162 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVK 162 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEE
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCEE
Confidence 445789999999999999997542 45899999999999999999999 89999999999999999999999
Q ss_pred EEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc
Q 005760 533 LSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL 612 (678)
Q Consensus 533 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~ 612 (678)
|+|||++....... ......+++.|+|||.+.+..++.++||||||+++|||++|..|+..... ......
T Consensus 163 l~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~-------~~~~~~ 232 (284)
T 2a19_B 163 IGDFGLVTSLKNDG---KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSK-------FFTDLR 232 (284)
T ss_dssp ECCCTTCEESSCCS---CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH-------HHHHHH
T ss_pred ECcchhheeccccc---cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHH-------HHHHhh
Confidence 99999998764332 22345689999999999988999999999999999999999988753211 111000
Q ss_pred CCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 613 PISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
... . + ..++.++.+++.+||+.||++|||+.|+++.|+.++++..
T Consensus 233 ~~~----~-~-------------~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~ 277 (284)
T 2a19_B 233 DGI----I-S-------------DIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE 277 (284)
T ss_dssp TTC----C-C-------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred ccc----c-c-------------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence 000 0 0 0133457899999999999999999999999999876543
No 172
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=4.2e-40 Score=356.26 Aligned_cols=248 Identities=24% Similarity=0.304 Sum_probs=195.0
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecc---cCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQ---YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|.. .+|+.||+|++... .......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 46799999999999999999985 47999999999754 233446677899999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYS-AQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~-~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
|||+++|+|.+++...+ .+++..+..++.|++.||+||| + ++|+||||||+||+++.++.+||+|||+++.....
T Consensus 227 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 302 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD 302 (446)
T ss_dssp ECCCSSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred EeeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCC
Confidence 99999999999997665 4899999999999999999999 7 89999999999999999999999999999754322
Q ss_pred CCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
........||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+... ....|
T Consensus 303 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~------~~~~p--- 369 (446)
T 4ejn_A 303 --GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--KLFELILME------EIRFP--- 369 (446)
T ss_dssp ------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHC------CCCCC---
T ss_pred --CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH--HHHHHHHhC------CCCCC---
Confidence 22234567999999999999999999999999999999999999999653221 111111000 00001
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCC-----CHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRI-----NAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~ell~ 665 (678)
..+++++.+++.+||+.||++|| +++|+++
T Consensus 370 ----------~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 370 ----------RTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp ----------TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred ----------ccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 11345688999999999999999 9999985
No 173
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=338.60 Aligned_cols=256 Identities=23% Similarity=0.310 Sum_probs=189.5
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCC-Cccceeeeeee--------ecC
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-HRNIIKVISSC--------SNE 460 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~--------~~~ 460 (678)
..+|++.+.||+|+||.||+|.. .+++.||+|++........+.+.+|+.+++.+. ||||+++++++ ...
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 45789999999999999999985 478999999987665556677889999999996 99999999988 344
Q ss_pred CeEEEEEEecCCCCHHHHhhh--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEcCCCCCCeeecCCCcEEEEee
Q 005760 461 EFKALVLEYMPHGSLEKYLHS--SNYILDIYQRLNIMIDVASALEYLHFGYSAQ--VIHCDLKPSNVLLDDNMVAHLSDF 536 (678)
Q Consensus 461 ~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dl~~~Nill~~~~~~kl~Df 536 (678)
...++||||++ |+|.+++.. ....+++..++.++.|++.||+||| +.+ |+||||||+||+++.++.+||+||
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl~Df 182 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKLCDF 182 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEEecC
Confidence 56889999996 699998865 3345899999999999999999999 888 999999999999999999999999
Q ss_pred ccccccCCCCCcc----------eeecccCCccccCcccc---CCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccc
Q 005760 537 GIAKLLTREDQST----------IQTQTLATIGYMAPEYG---KEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT 603 (678)
Q Consensus 537 g~~~~~~~~~~~~----------~~~~~~~~~~y~aPE~~---~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~ 603 (678)
|+++......... ......+|+.|+|||++ .+..++.++|||||||++|||++|+.||........
T Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~- 261 (337)
T 3ll6_A 183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRI- 261 (337)
T ss_dssp TTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred ccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHh-
Confidence 9998765332111 11244589999999988 566789999999999999999999999965322111
Q ss_pred hhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 604 LKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
...... ...+ ..++..+.+++.+||+.||++||++.|+++.|+.+...
T Consensus 262 ----~~~~~~-----~~~~-------------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~ 309 (337)
T 3ll6_A 262 ----VNGKYS-----IPPH-------------DTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAA 309 (337)
T ss_dssp --------CC-----CCTT-------------CCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----hcCccc-----CCcc-------------cccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 000000 0000 01122367899999999999999999999999999765
No 174
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=7.9e-39 Score=326.15 Aligned_cols=246 Identities=26% Similarity=0.394 Sum_probs=197.3
Q ss_pred CCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeec----CCeEEE
Q 005760 393 GFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSN----EEFKAL 465 (678)
Q Consensus 393 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~----~~~~~l 465 (678)
.|.+.+.||+|+||.||+|.. .++..||+|++.... ....+.+.+|+.+++.++||||+++++++.. ....++
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 106 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence 477788999999999999975 478899999987543 2345678899999999999999999998754 456899
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEcCCCCCCeeec-CCCcEEEEeecccccc
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQ--VIHCDLKPSNVLLD-DNMVAHLSDFGIAKLL 542 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dl~~~Nill~-~~~~~kl~Dfg~~~~~ 542 (678)
||||+++++|.+++.... .+++..+..++.|++.||.||| +.+ |+||||||+||+++ .++.+||+|||++...
T Consensus 107 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~ 182 (290)
T 1t4h_A 107 VTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK 182 (290)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred EEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccc
Confidence 999999999999998754 4889999999999999999999 888 99999999999997 8899999999999754
Q ss_pred CCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccC
Q 005760 543 TREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDP 622 (678)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (678)
... ......+++.|+|||.+. +.++.++||||+|+++|+|++|+.||..................+..
T Consensus 183 ~~~----~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~------- 250 (290)
T 1t4h_A 183 RAS----FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPAS------- 250 (290)
T ss_dssp CTT----SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGG-------
T ss_pred ccc----ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccc-------
Confidence 322 223456899999999876 45899999999999999999999999753332221111111100000
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 623 NLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.+...++++.+++.+||+.||++|||+.|+++
T Consensus 251 -----------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 251 -----------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp -----------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -----------cCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 00112345889999999999999999999986
No 175
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-38 Score=366.35 Aligned_cols=301 Identities=36% Similarity=0.565 Sum_probs=263.2
Q ss_pred ccccCCcCcccCCccccC--CCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEE
Q 005760 2 LQMWENNFSGTIPRFIFN--ASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLI 79 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~--l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L 79 (678)
|+|++|++++.+|..+.. +++|++|+|++|++++..|..|.++++|+.|+|++|.+....+ ..|.++++|+.|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-----~~l~~l~~L~~L 447 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-----SSLGSLSKLRDL 447 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC-----GGGGGCTTCCEE
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc-----HHHhcCCCCCEE
Confidence 567777777777766666 7788888888888888888888888999999999988875443 357888899999
Q ss_pred ECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCc
Q 005760 80 SFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNK 159 (678)
Q Consensus 80 ~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~ 159 (678)
+|++|.+.+..|.. +..++ +|++|++++|++++..|..+.++++|++|+|++|++++..|..|+.+++|++|+|++|+
T Consensus 448 ~L~~n~l~~~~p~~-~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 448 KLWLNMLEGEIPQE-LMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp ECCSSCCCSCCCGG-GGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCcccCcCCHH-HcCCC-CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 99999998887766 66666 89999999999998899999999999999999999988889999999999999999999
Q ss_pred CCCCCCCcccCCCCccEEecCCCcCCCCChhhh-----------------------------------------------
Q 005760 160 LEGSIPDSICHSDELYKLELGGNKLSGSIPECF----------------------------------------------- 192 (678)
Q Consensus 160 i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~----------------------------------------------- 192 (678)
+++.+|..+..+++|+.|++++|.+.+.+|..+
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 988889999999999999999998887666543
Q ss_pred -----------------------hccccccceeccccccc-cccccccccccccEEEecCCcccCCCCcccccccccccc
Q 005760 193 -----------------------NNLASLRILLLGSNELT-SIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARID 248 (678)
Q Consensus 193 -----------------------~~l~~L~~L~l~~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~ 248 (678)
..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++|.+|..+++++
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~----- 680 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR----- 680 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-----
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC-----
Confidence 23567889999999998 6788999999999999999999999999999888
Q ss_pred ccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccccccccccCccccCCCCC
Q 005760 249 SCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNL 319 (678)
Q Consensus 249 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~ 319 (678)
+|+.|||++|++++.+|..+..++.|++|++++|++++.+|....+..+...++.|||..|+.|..
T Consensus 681 -----~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~ 746 (768)
T 3rgz_A 681 -----GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746 (768)
T ss_dssp -----TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC
T ss_pred -----CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998843
No 176
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=1e-39 Score=366.21 Aligned_cols=253 Identities=24% Similarity=0.378 Sum_probs=201.5
Q ss_pred ccccCCCceeEEEEEe---CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEecCC
Q 005760 398 NLIGRGSFGSVFKARL---GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEYMPH 472 (678)
Q Consensus 398 ~~ig~G~~g~V~~~~~---~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 472 (678)
+.||+|+||.||+|.+ +.++.||||+++.... ...+.+.+|+++++.++||||+++++++.+ +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 4799999999999954 3568899999975432 345788999999999999999999999975 457899999999
Q ss_pred CCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC-ccee
Q 005760 473 GSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ-STIQ 551 (678)
Q Consensus 473 ~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~ 551 (678)
|+|.+++.... .+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+++....... ....
T Consensus 454 g~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~ 529 (635)
T 4fl3_A 454 GPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 529 (635)
T ss_dssp EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC--------
T ss_pred CCHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccc
Confidence 99999997654 4899999999999999999999 89999999999999999999999999999987653322 2223
Q ss_pred ecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCccCCccch
Q 005760 552 TQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDI 630 (678)
Q Consensus 552 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (678)
....+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+....+ ....+..... ..
T Consensus 530 ~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~--~~~~i~~~~~--------~~------- 592 (635)
T 4fl3_A 530 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE--VTAMLEKGER--------MG------- 592 (635)
T ss_dssp -----CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTTCC--------CC-------
T ss_pred cCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCCC--------CC-------
Confidence 34457789999999999999999999999999999998 999997643321 1111111000 00
Q ss_pred hhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHHh
Q 005760 631 NFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSLL 675 (678)
Q Consensus 631 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~~ 675 (678)
.+..++.++.+++.+||+.||++||++.+++++|+++..++.
T Consensus 593 ---~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l~ 634 (635)
T 4fl3_A 593 ---CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV 634 (635)
T ss_dssp ---CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHC
T ss_pred ---CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhc
Confidence 011355678999999999999999999999999999987653
No 177
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=2.9e-39 Score=340.33 Aligned_cols=275 Identities=21% Similarity=0.253 Sum_probs=202.0
Q ss_pred CHHHHHHhhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCc-----------hhhhHHHHHHHHHhCCCccce
Q 005760 383 SYLELCRATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGR-----------VFKSFDVECEMMKSIRHRNII 451 (678)
Q Consensus 383 ~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv 451 (678)
...++....++|++.+.||+|+||.||+|...+|+.||||++...... ..+.+.+|+++++.++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 346778889999999999999999999999888999999998543221 126788999999999999999
Q ss_pred eeeeeee-----cCCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec
Q 005760 452 KVISSCS-----NEEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD 526 (678)
Q Consensus 452 ~~~~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~ 526 (678)
++++++. .....++||||++ |+|.+++......+++..+..++.|++.||.||| +++|+||||||+||+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~ 168 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLA 168 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEC
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEEc
Confidence 9999983 3447899999997 5999998877667999999999999999999999 89999999999999999
Q ss_pred CCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchh
Q 005760 527 DNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLK 605 (678)
Q Consensus 527 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~ 605 (678)
.++.+||+|||++...... .......+|+.|+|||.+.+ ..++.++||||+||++|+|++|+.||.+....+ ...
T Consensus 169 ~~~~~kl~Dfg~~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~ 244 (362)
T 3pg1_A 169 DNNDITICDFNLAREDTAD---ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYN-QLN 244 (362)
T ss_dssp TTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHH
T ss_pred CCCCEEEEecCcccccccc---cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHH-HHH
Confidence 9999999999999754322 22345578999999998876 678999999999999999999999997632211 111
Q ss_pred hhhhcccCCc-----------ccccccCccCCccc-hhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 606 HWVNDWLPIS-----------TKEIVDPNLLSRED-INFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 606 ~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.......... .............. ........+++.+.+++.+||+.||++|||+.|+++
T Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 1110000000 00000000000000 000111234567899999999999999999999986
No 178
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=3.6e-39 Score=337.73 Aligned_cols=264 Identities=19% Similarity=0.298 Sum_probs=206.2
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCch-----------------hhhHHHHHHHHHhCCCccceee
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRV-----------------FKSFDVECEMMKSIRHRNIIKV 453 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~e~~~l~~l~h~niv~~ 453 (678)
.++|++.+.||+|+||.||+|.. +++.||+|++....... .+.+.+|+++++.++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999998 89999999996542211 1778999999999999999999
Q ss_pred eeeeecCCeEEEEEEecCCCCHHHH------hhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEEcCCCCCCeee
Q 005760 454 ISSCSNEEFKALVLEYMPHGSLEKY------LHSS-NYILDIYQRLNIMIDVASALEYLHFGYS-AQVIHCDLKPSNVLL 525 (678)
Q Consensus 454 ~~~~~~~~~~~lv~e~~~~~~L~~~------l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~-~~ivH~dl~~~Nill 525 (678)
++++.+.+..++||||+++++|.++ +... ...+++..+..++.|++.||+||| + ++|+||||+|+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence 9999999999999999999999998 6542 346899999999999999999999 7 999999999999999
Q ss_pred cCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCC-CCCc-cchHHHHHHHHHHHHcCCCCCCcccCCccc
Q 005760 526 DDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEG-RVSA-NGDVYSFGIMLMETFTRKKPTDEIFNGEMT 603 (678)
Q Consensus 526 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~-~~DvwslGv~l~ell~g~~p~~~~~~~~~~ 603 (678)
+.++.+||+|||.+...... ......+++.|+|||.+.+. .++. ++||||+|+++|||++|+.||.........
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~ 261 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVEL 261 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHH
T ss_pred cCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH
Confidence 99999999999999765322 34456799999999999877 5665 999999999999999999999764432222
Q ss_pred hhhhhhcccCCc--ccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 604 LKHWVNDWLPIS--TKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 604 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
............ ......+. ... ........++.++.+++.+||+.||++|||+.|+++
T Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 262 FNNIRTKNIEYPLDRNHFLYPL-TNK--KSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp HHHHTSCCCCCCCSSSSSTTTT-CC----------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHhccCcCCccchhhhhccc-ccc--ccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 221111111000 00000000 000 000111345677999999999999999999999986
No 179
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=4.1e-40 Score=342.75 Aligned_cols=252 Identities=23% Similarity=0.328 Sum_probs=198.9
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~ 467 (678)
..++|++.+.||+|+||.||+|..+ +++.||+|++.... ....+|++++.++ +||||+++++++.+.+..|+||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK----RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT----CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc----CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 3567999999999999999999864 78999999997543 2345688888887 7999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC-C---CcEEEEeeccccccC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD-N---MVAHLSDFGIAKLLT 543 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~-~---~~~kl~Dfg~~~~~~ 543 (678)
||+++|+|.+++...+ .+++..+..++.||+.||+||| +++|+||||||+||++.. + +.+||+|||+++...
T Consensus 96 E~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~ 171 (342)
T 2qr7_A 96 ELMKGGELLDKILRQK-FFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR 171 (342)
T ss_dssp CCCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred eCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence 9999999999997665 4899999999999999999999 999999999999999843 2 359999999998654
Q ss_pred CCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 544 REDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
... .......+|+.|+|||++.+..++.++||||+||++|||++|..||...... ............... ....
T Consensus 172 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~~~~i~~~~~~-~~~~- 245 (342)
T 2qr7_A 172 AEN--GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD--TPEEILARIGSGKFS-LSGG- 245 (342)
T ss_dssp CTT--CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTS--CHHHHHHHHHHCCCC-CCST-
T ss_pred CCC--CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcC--CHHHHHHHHccCCcc-cCcc-
Confidence 322 2233457899999999998888999999999999999999999999753211 111111110000000 0000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....++.++.+++.+||+.||++||++.|+++
T Consensus 246 ----------~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 246 ----------YWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp ----------TTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ----------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00123556889999999999999999999876
No 180
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=4.7e-40 Score=335.38 Aligned_cols=260 Identities=26% Similarity=0.402 Sum_probs=199.1
Q ss_pred hcCCCCCccccCCCceeEEEEEeC--CCc--EEEEEEeecc---cCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG--DGM--EVAMKVFNLQ---YGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~--~~~--~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~ 463 (678)
.++|++.+.||+|+||.||+|.+. +++ .||+|++... .....+.+.+|+++++.++||||+++++++.+.+ .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 467899999999999999999742 333 6899998654 2345577889999999999999999999998765 7
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
++|+||+++++|.+++......+++..+..++.|++.||.||| +++++|+||||+||+++.++.+||+|||++....
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 172 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALP 172 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEcccccccccc
Confidence 8999999999999999876566899999999999999999999 8999999999999999999999999999998765
Q ss_pred CCCCc-ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCccccccc
Q 005760 544 REDQS-TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVD 621 (678)
Q Consensus 544 ~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (678)
..... .......++..|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+.. ... ....
T Consensus 173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~~~~---~~~-~~~~ 246 (291)
T 1u46_A 173 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ--ILHKIDK---EGE-RLPR 246 (291)
T ss_dssp C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHT---SCC-CCCC
T ss_pred ccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHH--HHHHHHc---cCC-CCCC
Confidence 43322 12334567888999999988889999999999999999999 999987532211 1111100 000 0000
Q ss_pred CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 622 PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
+..++.++.+++.+||+.||++|||+.|+++.|++++..
T Consensus 247 -------------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 247 -------------PEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp -------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred -------------CcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 012456688999999999999999999999999998654
No 181
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=6.8e-39 Score=328.98 Aligned_cols=251 Identities=22% Similarity=0.326 Sum_probs=202.1
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
..++|.+.+.||+|+||.||+|... +|+.||+|++........+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ 86 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence 3567899999999999999999864 799999999976544445678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee---cCCCcEEEEeeccccccCCC
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill---~~~~~~kl~Dfg~~~~~~~~ 545 (678)
|+++++|.+++...+ .+++..+..++.|++.|+.||| +.+|+||||||+||++ +.++.+||+|||++......
T Consensus 87 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~ 162 (304)
T 2jam_A 87 LVSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG 162 (304)
T ss_dssp CCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB
T ss_pred cCCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC
Confidence 999999999987654 4889999999999999999999 8999999999999999 78899999999998754321
Q ss_pred CCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
......+++.|+|||.+.+..++.++||||+|+++|||++|+.||....... ........... ...+
T Consensus 163 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~-----~~~~--- 229 (304)
T 2jam_A 163 ----IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESK-LFEKIKEGYYE-----FESP--- 229 (304)
T ss_dssp ----TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHCCCC-----CCTT---
T ss_pred ----ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHcCCCC-----CCcc---
Confidence 1233468999999999999999999999999999999999999997532211 11111111100 0000
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....++.++.+++.+||+.||++||++.|+++
T Consensus 230 --------~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 230 --------FWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp --------TTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred --------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 00123456889999999999999999999986
No 182
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=3.7e-39 Score=352.79 Aligned_cols=251 Identities=23% Similarity=0.316 Sum_probs=202.8
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
..++|++.+.||+|+||+||+|... +++.||||++.... ......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 4567999999999999999999864 79999999996432 33457788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec---CCCcEEEEeeccccccC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD---DNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~---~~~~~kl~Dfg~~~~~~ 543 (678)
|||+++++|.+++.... .+++..+..++.|++.||.||| +++|+||||||+||+++ .++.+||+|||+++...
T Consensus 100 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 175 (486)
T 3mwu_A 100 GELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (486)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBC
T ss_pred EEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECC
Confidence 99999999999987654 4899999999999999999999 99999999999999995 56689999999997654
Q ss_pred CCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 544 REDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
.. .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+....+. ............
T Consensus 176 ~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~~~~-------- 242 (486)
T 3mwu_A 176 QN---TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDI-LKRVETGKYAFD-------- 242 (486)
T ss_dssp CC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHTCCCSC--------
T ss_pred CC---CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCCCCC--------
Confidence 32 22345679999999999875 589999999999999999999999976322111 111111100000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
......+++++.+++.+||+.||++|||+.|+++
T Consensus 243 --------~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 243 --------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp --------SGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred --------CcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 0011234566889999999999999999999987
No 183
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=2e-39 Score=332.68 Aligned_cols=253 Identities=24% Similarity=0.338 Sum_probs=200.8
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
..++|++.+.||+|+||.||+|... +++.||+|++........+.+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 4568999999999999999999865 689999999976655667888999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
|+++++|.+++......+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||++...... .
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~ 171 (302)
T 2j7t_A 97 FCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT--L 171 (302)
T ss_dssp CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH--H
T ss_pred eCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc--c
Confidence 99999999999876667999999999999999999999 899999999999999999999999999987543211 1
Q ss_pred ceeecccCCccccCcccc-----CCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 549 TIQTQTLATIGYMAPEYG-----KEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~-----~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
.......+++.|+|||.+ .+..++.++||||||+++|+|++|+.||........ ......... +.
T Consensus 172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~~~~---------~~ 241 (302)
T 2j7t_A 172 QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV-LLKIAKSDP---------PT 241 (302)
T ss_dssp HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHHHHHSCC---------CC
T ss_pred cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHH-HHHHhccCC---------cc
Confidence 122345689999999987 466789999999999999999999999875332111 111111100 00
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.. .+..++.++.+++.+||+.||++|||+.|+++
T Consensus 242 ~~--------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 242 LL--------TPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp CS--------SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred cC--------CccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 00 01123456889999999999999999999975
No 184
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=1.3e-38 Score=344.82 Aligned_cols=262 Identities=18% Similarity=0.207 Sum_probs=210.6
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCC-ccceeeeeeeecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRH-RNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~~~~~~~~~~~~~lv~e 468 (678)
.++|++.+.||+|+||.||+|.. .+++.||||++..... ...+..|+++++.++| +++..+..++.+.+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46899999999999999999985 5799999999865433 3568899999999987 455566666677888899999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee---cCCCcEEEEeeccccccCCC
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill---~~~~~~kl~Dfg~~~~~~~~ 545 (678)
|+ +++|.+++......+++..++.++.||+.||+||| +++|+||||||+|||+ +.++.+||+|||+++.+...
T Consensus 84 ~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~ 159 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT 159 (483)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred CC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence 99 89999999876667999999999999999999999 9999999999999999 68899999999999876543
Q ss_pred CCc-----ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccc--hhhhhhcccCCcccc
Q 005760 546 DQS-----TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT--LKHWVNDWLPISTKE 618 (678)
Q Consensus 546 ~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~ 618 (678)
... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......... +...........
T Consensus 160 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~--- 236 (483)
T 3sv0_A 160 STHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATS--- 236 (483)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSC---
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcccccc---
Confidence 221 1223567999999999999999999999999999999999999999764332111 111000000000
Q ss_pred cccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 619 IVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
.......++.++.+++.+||+.||++||++.++++.|+.+...
T Consensus 237 ------------~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~ 279 (483)
T 3sv0_A 237 ------------IEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR 279 (483)
T ss_dssp ------------HHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred ------------HHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence 0001123567799999999999999999999999999998764
No 185
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=5.2e-39 Score=338.06 Aligned_cols=255 Identities=25% Similarity=0.360 Sum_probs=205.2
Q ss_pred HHHhhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC--------chhhhHHHHHHHHHhC-CCccceeeeee
Q 005760 387 LCRATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG--------RVFKSFDVECEMMKSI-RHRNIIKVISS 456 (678)
Q Consensus 387 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l-~h~niv~~~~~ 456 (678)
.....++|++.+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+.+++.+ +||||++++++
T Consensus 89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 168 (365)
T 2y7j_A 89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS 168 (365)
T ss_dssp HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 3445678999999999999999999865 799999999975432 1245678899999999 79999999999
Q ss_pred eecCCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEee
Q 005760 457 CSNEEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDF 536 (678)
Q Consensus 457 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Df 536 (678)
+...+..++||||+++++|.+++.... .+++..+..++.||+.||.||| +.||+|+||||+||+++.++.+||+||
T Consensus 169 ~~~~~~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~Df 244 (365)
T 2y7j_A 169 YESSSFMFLVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDF 244 (365)
T ss_dssp EEBSSEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCC
T ss_pred EeeCCEEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEec
Confidence 999999999999999999999998654 4899999999999999999999 899999999999999999999999999
Q ss_pred ccccccCCCCCcceeecccCCccccCccccCC------CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhc
Q 005760 537 GIAKLLTREDQSTIQTQTLATIGYMAPEYGKE------GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVND 610 (678)
Q Consensus 537 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~ 610 (678)
|++....... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... .....+..
T Consensus 245 G~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~--~~~~~i~~ 319 (365)
T 2y7j_A 245 GFSCHLEPGE---KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQI--LMLRMIME 319 (365)
T ss_dssp TTCEECCTTC---CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH
T ss_pred CcccccCCCc---ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHH--HHHHHHHh
Confidence 9998764322 2344679999999998753 35888999999999999999999999652211 11111110
Q ss_pred ccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 611 WLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.. . .........++.++.+++.+||+.||++|||+.|+++
T Consensus 320 ~~-----------~----~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 320 GQ-----------Y----QFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp TC-----------C----CCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CC-----------C----CCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 00 0 0000111234566889999999999999999999986
No 186
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=3e-39 Score=328.21 Aligned_cols=246 Identities=25% Similarity=0.352 Sum_probs=203.6
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 467999999999999999999864 68899999986532 23346788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++++|.+++.... .+++..+..++.|++.|+.||| +.+|+||||+|+||+++.++.+||+|||++......
T Consensus 93 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~- 167 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL- 167 (284)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSS-
T ss_pred EEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCccc-
Confidence 99999999999998765 4899999999999999999999 999999999999999999999999999998765322
Q ss_pred CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
......+++.|+|||.+.+..++.++||||+|+++|+|++|+.||......+. ....... . ...+
T Consensus 168 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~----~---~~~~---- 232 (284)
T 2vgo_A 168 ---RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTET-HRRIVNV----D---LKFP---- 232 (284)
T ss_dssp ---CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHTT----C---CCCC----
T ss_pred ---ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHH-HHHHhcc----c---cCCC----
Confidence 22345689999999999998999999999999999999999999975322111 1111000 0 0000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
...+.++.+++.+||+.||++||++.|+++
T Consensus 233 ---------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 233 ---------PFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp ---------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ---------CcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 123455889999999999999999999986
No 187
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=329.19 Aligned_cols=252 Identities=27% Similarity=0.362 Sum_probs=201.0
Q ss_pred HhhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 389 RATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 389 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
...++|++.+.||+|+||.||+|... +|+.||+|++.... ..+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 103 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM 103 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence 34678999999999999999999864 69999999997543 3467889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+++++|.+++......+++..+..++.|++.|+.||| +.+++|+||+|+||+++.++.+||+|||.+......
T Consensus 104 e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~-- 178 (314)
T 3com_A 104 EYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT-- 178 (314)
T ss_dssp ECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTT--
T ss_pred ecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhh--
Confidence 999999999999865566999999999999999999999 999999999999999999999999999999765432
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCc
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSR 627 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (678)
........+++.|+|||.+.+..++.++||||+|+++|+|++|+.||........ ........ .+...
T Consensus 179 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~~~~~~~~--------~~~~~-- 246 (314)
T 3com_A 179 MAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRA--IFMIPTNP--------PPTFR-- 246 (314)
T ss_dssp BSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH--HHHHHHSC--------CCCCS--
T ss_pred ccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHH--HHHHhcCC--------CcccC--
Confidence 2223445789999999999998999999999999999999999999975322111 00000000 00000
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 628 EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 628 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.+..++.++.+++.+||+.||++|||+.|+++
T Consensus 247 ------~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 247 ------KPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp ------SGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ------CcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 01123456889999999999999999999986
No 188
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=325.56 Aligned_cols=250 Identities=25% Similarity=0.394 Sum_probs=198.2
Q ss_pred CCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEEecC
Q 005760 393 GFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLEYMP 471 (678)
Q Consensus 393 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~ 471 (678)
+|.....||+|+||.||+|.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++.+.+..++||||++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 455556999999999999985 5789999999977655666788999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC-CCcEEEEeeccccccCCCCCc
Q 005760 472 HGSLEKYLHSSNY--ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD-NMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 472 ~~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~-~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
+++|.+++..... ..++..+..++.|++.||+||| +++|+|+||+|+||+++. ++.+||+|||.+.......
T Consensus 103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~-- 177 (295)
T 2clq_A 103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN-- 177 (295)
T ss_dssp EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC----
T ss_pred CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCC--
Confidence 9999999986532 4568889999999999999999 899999999999999987 8999999999998664321
Q ss_pred ceeecccCCccccCccccCCCC--CCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 549 TIQTQTLATIGYMAPEYGKEGR--VSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~--~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
.......+++.|+|||.+.+.. ++.++||||||+++|||++|+.||............... .. ..+...
T Consensus 178 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~--~~------~~~~~~- 248 (295)
T 2clq_A 178 PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGM--FK------VHPEIP- 248 (295)
T ss_dssp ---CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHH--HC------CCCCCC-
T ss_pred CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcc--cc------cccccc-
Confidence 2233456899999999987653 789999999999999999999999753322111111000 00 000000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..++.++.+++.+||+.||++||++.|+++
T Consensus 249 ---------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 249 ---------ESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp ---------TTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred ---------ccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 123456889999999999999999999975
No 189
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=1.5e-39 Score=333.75 Aligned_cols=264 Identities=24% Similarity=0.337 Sum_probs=187.2
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
....++|++.+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+++++.++||||+++++++...+..++
T Consensus 11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 90 (303)
T 2vwi_A 11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL 90 (303)
T ss_dssp --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence 44568899999999999999999985 478999999986442 2345678889999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhhh-------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecc
Q 005760 466 VLEYMPHGSLEKYLHS-------SNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGI 538 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~-------~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~ 538 (678)
||||+++++|.+++.. ....+++..+..++.|++.||+||| +++++||||+|+||+++.++.+||+|||+
T Consensus 91 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~ 167 (303)
T 2vwi_A 91 VMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGV 167 (303)
T ss_dssp EEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHH
T ss_pred EehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccc
Confidence 9999999999999874 2345899999999999999999999 89999999999999999999999999999
Q ss_pred ccccCCCCC---cceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCC
Q 005760 539 AKLLTREDQ---STIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPI 614 (678)
Q Consensus 539 ~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~ 614 (678)
+........ ........+++.|+|||++.+ ..++.++||||+|+++|||++|+.||........... ......+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-~~~~~~~~ 246 (303)
T 2vwi_A 168 SAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLML-TLQNDPPS 246 (303)
T ss_dssp HHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHH-HHTSSCCC
T ss_pred hheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHH-HhccCCCc
Confidence 976543211 112234568999999998876 5689999999999999999999999976433221111 11111110
Q ss_pred cccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 615 STKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
......++... ..++.++.+++.+||+.||++||++.|+++
T Consensus 247 ~~~~~~~~~~~----------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 247 LETGVQDKEML----------KKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp TTC-----CCC----------CCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cccccccchhh----------hhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 00011111111 123456889999999999999999999986
No 190
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=4.2e-39 Score=351.84 Aligned_cols=253 Identities=24% Similarity=0.312 Sum_probs=204.3
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|...+.||+|+||.||+|+.+ +|+.||+|++.... ....+.+..|+++++.++||||+++++++.+.+..|+|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 367888999999999999999864 79999999996542 23346788899999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 467 LEYMPHGSLEKYLHSSN---YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
|||+++|+|.+++.... ..+++..+..++.||+.||+||| +++|+||||||+||+++.+|.+||+|||+++...
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 99999999999987643 35899999999999999999999 9999999999999999999999999999998764
Q ss_pred CCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 544 REDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||........ ............ ..-|
T Consensus 341 ~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~-~~~~~~~i~~~~---~~~p- 413 (543)
T 3c4z_A 341 AGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVE-NKELKQRVLEQA---VTYP- 413 (543)
T ss_dssp TTCC--CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCC-HHHHHHHHHHCC---CCCC-
T ss_pred CCCc--ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchh-HHHHHHHHhhcc---cCCC-
Confidence 3221 22345799999999999999999999999999999999999999976432211 111111100000 0000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCH-----HHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINA-----KEIVT 665 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~-----~ell~ 665 (678)
..+++++.+++.+||+.||++||++ .|+++
T Consensus 414 ------------~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~ 448 (543)
T 3c4z_A 414 ------------DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT 448 (543)
T ss_dssp ------------TTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred ------------cccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence 1234568899999999999999965 56653
No 191
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2.2e-39 Score=330.90 Aligned_cols=248 Identities=19% Similarity=0.287 Sum_probs=204.7
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|.+.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 467899999999999999999865 68899999987542 23456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++++|.+++.... .+++..+..++.|++.|++||| +++++||||||+||+++.++.+||+|||++.......
T Consensus 94 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 169 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169 (294)
T ss_dssp EECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence 99999999999987654 4899999999999999999999 8999999999999999999999999999998764322
Q ss_pred CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
.......+++.|+|||.+.+..++.++||||+|+++|+|++|+.||......+. ........ ...+
T Consensus 170 --~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-~~~~~~~~-------~~~~---- 235 (294)
T 2rku_A 170 --ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET-YLRIKKNE-------YSIP---- 235 (294)
T ss_dssp --CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHTTC-------CCCC----
T ss_pred --cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHhhcc-------CCCc----
Confidence 223445689999999999988899999999999999999999999975322111 11110000 0000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..++..+.+++.+||+.||++|||+.|+++
T Consensus 236 ---------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 236 ---------KHINPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp ---------TTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ---------cccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 113345889999999999999999999986
No 192
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=1.6e-38 Score=326.13 Aligned_cols=249 Identities=27% Similarity=0.379 Sum_probs=205.7
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
.+.|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 45788999999999999999975 578999999997553 3345778999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCc
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQS 548 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 548 (678)
|+++++|.+++... .+++..+..++.|++.||.||| +.+|+|+||+|+||+++.++.+||+|||++.......
T Consensus 101 ~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 173 (303)
T 3a7i_A 101 YLGGGSALDLLEPG--PLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ-- 173 (303)
T ss_dssp CCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB--
T ss_pred eCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCccc--
Confidence 99999999999764 4899999999999999999999 8999999999999999999999999999997654322
Q ss_pred ceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCcc
Q 005760 549 TIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSRE 628 (678)
Q Consensus 549 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (678)
.......+++.|+|||.+.+..++.++||||||+++|+|++|+.||....... ....+.... .+...
T Consensus 174 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~--------~~~~~--- 240 (303)
T 3a7i_A 174 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMK--VLFLIPKNN--------PPTLE--- 240 (303)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHHSC--------CCCCC---
T ss_pred cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHH--HHHHhhcCC--------CCCCc---
Confidence 22345578999999999999999999999999999999999999986532211 111111000 00000
Q ss_pred chhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHH
Q 005760 629 DINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTK 666 (678)
Q Consensus 629 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~ 666 (678)
..++.++.+++.+||+.||++|||+.|+++.
T Consensus 241 -------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 241 -------GNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp -------SSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred -------cccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 1234558899999999999999999999874
No 193
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=8.4e-39 Score=351.42 Aligned_cols=251 Identities=22% Similarity=0.339 Sum_probs=201.8
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC-------------chhhhHHHHHHHHHhCCCccceeeee
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG-------------RVFKSFDVECEMMKSIRHRNIIKVIS 455 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~e~~~l~~l~h~niv~~~~ 455 (678)
..++|.+.+.||+|+||+||+|... +++.||+|++..... ...+.+.+|+.+++.++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 4578999999999999999999854 689999999865321 23467889999999999999999999
Q ss_pred eeecCCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC---cEE
Q 005760 456 SCSNEEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM---VAH 532 (678)
Q Consensus 456 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~---~~k 532 (678)
++.+.+..++||||+++|+|.+++.... .+++..+..++.||+.||+||| +++|+||||||+||+++.++ .+|
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~k 189 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINRH-KFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIK 189 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSEE
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccEE
Confidence 9999999999999999999999987654 4899999999999999999999 89999999999999998776 699
Q ss_pred EEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc
Q 005760 533 LSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL 612 (678)
Q Consensus 533 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~ 612 (678)
|+|||++...... .......||+.|+|||++. +.++.++||||+||++|+|++|..||.+....+ ....+...
T Consensus 190 l~Dfg~a~~~~~~---~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~~~i~~~- 262 (504)
T 3q5i_A 190 IVDFGLSSFFSKD---YKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQD--IIKKVEKG- 262 (504)
T ss_dssp ECCCTTCEECCTT---SCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHC-
T ss_pred EEECCCCEEcCCC---CccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHcC-
Confidence 9999999876432 2234457999999999886 468999999999999999999999997633211 11111100
Q ss_pred CCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 613 PISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. ..........+++++.+++.+||++||.+|||+.|+++
T Consensus 263 ----------~----~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 263 ----------K----YYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp ----------C----CCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ----------C----CCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0 00011112235667899999999999999999999975
No 194
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=2.7e-39 Score=336.15 Aligned_cols=267 Identities=25% Similarity=0.360 Sum_probs=200.6
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
.++|++.+.||+|+||.||+|... +|+.||+|++..... ...+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 467889999999999999999864 689999999865432 23456778999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
||+++++|.++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 104 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 178 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG- 178 (331)
T ss_dssp ECCSEEHHHHHHHSTT-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred ecCCcchHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCc-
Confidence 9999988888766544 4899999999999999999999 8999999999999999999999999999997654322
Q ss_pred cceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc-----------C-C
Q 005760 548 STIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL-----------P-I 614 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~-----------~-~ 614 (678)
.......+++.|+|||.+.+. .++.++||||+||++|||++|+.||......+. ......... . .
T Consensus 179 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 256 (331)
T 4aaa_A 179 -EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQ-LYHIMMCLGNLIPRHQELFNKNP 256 (331)
T ss_dssp ------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCSCCHHHHHHHHHCG
T ss_pred -cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHH-HHHHHHHhCCCChhhhhHhhhcc
Confidence 223445689999999988775 689999999999999999999999976332211 111100000 0 0
Q ss_pred cccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 615 STKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.......+......... .....+++++.+++.+||+.||++|||+.|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 257 VFAGVRLPEIKEREPLE-RRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp GGTTCCCCCCSSCCCHH-HHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ccccccCccccccchhh-hcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 00011111111111111 111245677999999999999999999999986
No 195
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=4.7e-39 Score=352.53 Aligned_cols=250 Identities=22% Similarity=0.332 Sum_probs=198.4
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
.++|++.+.||+|+||.||+|..+ ++..||+|++.... ......+.+|+.+++.++||||+++++++.+....++||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 457899999999999999999864 78999999997542 234577889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC---CCcEEEEeeccccccCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD---NMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~---~~~~kl~Dfg~~~~~~~ 544 (678)
||+++|+|.+++.... .+++..+..++.||+.||+||| +++|+||||||+||+++. ++.+||+|||++.....
T Consensus 116 e~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~ 191 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN 191 (494)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBT
T ss_pred ecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCC
Confidence 9999999999887654 4899999999999999999999 899999999999999975 45599999999987643
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
. .......||+.|+|||++. +.++.++||||+||++|+|++|..||.+....+. .......... ...+
T Consensus 192 ~---~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~~-----~~~~-- 259 (494)
T 3lij_A 192 Q---KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEI-LRKVEKGKYT-----FDSP-- 259 (494)
T ss_dssp T---BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHTCCC-----CCSG--
T ss_pred C---ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCCC-----CCch--
Confidence 2 2234567999999999876 5689999999999999999999999976332211 1111111000 0000
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....+++++.+++.+||++||.+|||+.|+++
T Consensus 260 ---------~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 260 ---------EWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp ---------GGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ---------hcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 01124556889999999999999999999985
No 196
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=5.3e-39 Score=333.90 Aligned_cols=262 Identities=21% Similarity=0.285 Sum_probs=199.5
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCC-Cccceeeeeeeec--CCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-HRNIIKVISSCSN--EEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~--~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++.. ...+.+.+|+++++.++ ||||+++++++.+ ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 46799999999999999999974 5789999999863 33477889999999997 9999999999987 6678999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC-cEEEEeeccccccCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM-VAHLSDFGIAKLLTRE 545 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~-~~kl~Dfg~~~~~~~~ 545 (678)
|||+++++|.+++.. ++...+..++.|++.||+||| +++|+||||||+||+++.++ .+||+|||+++.....
T Consensus 112 ~e~~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~ 184 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG 184 (330)
T ss_dssp EECCCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred EeccCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence 999999999999853 788899999999999999999 99999999999999999776 8999999999866432
Q ss_pred CCcceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCc---------
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPIS--------- 615 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~--------- 615 (678)
. ......++..|+|||.+.+ ..++.++||||+||++|||++|+.||.........+...........
T Consensus 185 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 261 (330)
T 3nsz_A 185 Q---EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYN 261 (330)
T ss_dssp C---CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred C---ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhc
Confidence 2 2344578999999998877 66899999999999999999999998542221111111110000000
Q ss_pred ------ccccccCccCCc--cchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 616 ------TKEIVDPNLLSR--EDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 616 ------~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
............ ..........+++++.+++.+||++||++|||++|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 262 IELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp CCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred cccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 000000000000 00000001124667899999999999999999999986
No 197
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=2.3e-39 Score=342.02 Aligned_cols=262 Identities=12% Similarity=0.126 Sum_probs=186.3
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC---chhhhHHHHHHHHHhC--CCccceeee-------eee
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG---RVFKSFDVECEMMKSI--RHRNIIKVI-------SSC 457 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l--~h~niv~~~-------~~~ 457 (678)
..+|.+.+.||+|+||.||+|... +|+.||+|++..... ...+.+.+|+.+++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 345888999999999999999854 899999999976432 3345667785544444 699988755 333
Q ss_pred ecC-----------------CeEEEEEEecCCCCHHHHhhhCCCCCCHHHH------HHHHHHHHHHHHHHhcCCCCCeE
Q 005760 458 SNE-----------------EFKALVLEYMPHGSLEKYLHSSNYILDIYQR------LNIMIDVASALEYLHFGYSAQVI 514 (678)
Q Consensus 458 ~~~-----------------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~------~~i~~~i~~~l~~LH~~~~~~iv 514 (678)
... ...++||||++ ++|.+++......++...+ ..++.||+.||+||| +++|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~iv 216 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLV 216 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCc
Confidence 222 34799999998 8999999875444555556 778899999999999 99999
Q ss_pred EcCCCCCCeeecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCC--CCCCccchHHHHHHHHHHHHcCCC
Q 005760 515 HCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKE--GRVSANGDVYSFGIMLMETFTRKK 592 (678)
Q Consensus 515 H~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~~~DvwslGv~l~ell~g~~ 592 (678)
||||||+||+++.++.+||+|||+++.... ......+|+.|+|||++.+ ..++.++|||||||++|||++|+.
T Consensus 217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~ 291 (371)
T 3q60_A 217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGT-----RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFL 291 (371)
T ss_dssp ETTCSGGGEEECTTSCEEECCGGGEEETTC-----EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSC
T ss_pred cCcCCHHHEEECCCCCEEEEecceeeecCC-----CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999986532 1224567799999999987 679999999999999999999999
Q ss_pred CCCcccCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH--HHHHH
Q 005760 593 PTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT--KLLKI 670 (678)
Q Consensus 593 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~--~L~~~ 670 (678)
||.......... +..... ......... ......+++++.+++.+||++||++|||+.|+++ .++++
T Consensus 292 Pf~~~~~~~~~~--~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~ 359 (371)
T 3q60_A 292 PFGLVTPGIKGS--WKRPSL----RVPGTDSLA------FGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQL 359 (371)
T ss_dssp STTBCCTTCTTC--CCBCCT----TSCCCCSCC------CTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHH
T ss_pred CCCCcCcccccc--hhhhhh----hhccccccc------hhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHH
Confidence 998754332111 100000 000000000 0001134566889999999999999999999985 45555
Q ss_pred HHH
Q 005760 671 RDS 673 (678)
Q Consensus 671 ~~~ 673 (678)
...
T Consensus 360 ~~~ 362 (371)
T 3q60_A 360 QNE 362 (371)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 198
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.5e-39 Score=339.48 Aligned_cols=260 Identities=25% Similarity=0.339 Sum_probs=194.4
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCC------
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEE------ 461 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------ 461 (678)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... ...+.+.+|+++++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 46799999999999999999985 5799999999854322 23467889999999999999999999987653
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..|+||||+ +++|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 177 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQ 177 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence 469999999 78999999874 4899999999999999999999 99999999999999999999999999999986
Q ss_pred cCCCCCcceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccc
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIV 620 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (678)
.... .....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+..... .......+..
T Consensus 178 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~-~~g~~~~~~~ 250 (367)
T 1cm8_A 178 ADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD-QLKEIMK-VTGTPPAEFV 250 (367)
T ss_dssp CCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHH-HHCCCCHHHH
T ss_pred cccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH-hcCCCCHHHH
Confidence 5422 234578999999998876 678999999999999999999999997532211 1111110 0000000000
Q ss_pred c--------------CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 621 D--------------PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 621 ~--------------~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. +......... ....+++++.+++.+||+.||++|||+.|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 251 QRLQSDEAKNYMKGLPELEKKDFAS--ILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp HTCSCHHHHHHHHHSCCCCCCCGGG--TCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHhhhHHHHHHHHhCCCCCCCCHHH--HCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 0 0000000000 00134567899999999999999999999987
No 199
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=1.6e-38 Score=335.32 Aligned_cols=261 Identities=22% Similarity=0.247 Sum_probs=192.8
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCC------
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE------ 461 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------ 461 (678)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 46899999999999999999975 478999999997532 233466789999999999999999999987654
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..++||||+++ +|.+++.. .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 176 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLART 176 (371)
T ss_dssp EEEEEEECCSE-EHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred ceEEEEEcCCC-CHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence 78999999975 78888863 3889999999999999999999 89999999999999999999999999999976
Q ss_pred cCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC--------
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP-------- 613 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~-------- 613 (678)
.... .......+|+.|+|||++.+..++.++||||+||++|||++|+.||.+....+ .....+.....
T Consensus 177 ~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~ 252 (371)
T 2xrw_A 177 AGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID-QWNKVIEQLGTPCPEFMKK 252 (371)
T ss_dssp ----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHC-CCCCCHHHHTT
T ss_pred cccc---cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHHHH
Confidence 5322 22344678999999999999899999999999999999999999997632211 01110000000
Q ss_pred -----------------CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 614 -----------------ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 614 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....... +.... ..........+.++.+++.+||+.||++|||++|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 253 LQPTVRTYVENRPKYAGYSFEKLF-PDVLF--PADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp SCHHHHHHHHSSCCCCCCCHHHHS-CGGGS--CCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred hhhHHHHHHhhCccccccchhhhc-ccccC--cccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 0000000 00000 0011122345678999999999999999999999986
No 200
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=2.5e-39 Score=336.85 Aligned_cols=248 Identities=19% Similarity=0.288 Sum_probs=204.6
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|.+.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 467899999999999999999864 68899999987542 23456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++++|.+++.... .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++.......
T Consensus 120 ~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 195 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195 (335)
T ss_dssp ECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence 99999999999987654 4899999999999999999999 8999999999999999999999999999998764322
Q ss_pred CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
.......+++.|+|||.+.+..++.++||||||+++|||++|+.||......+. ......... ..+
T Consensus 196 --~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~-------~~~---- 261 (335)
T 2owb_A 196 --ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET-YLRIKKNEY-------SIP---- 261 (335)
T ss_dssp --CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHHTCC-------CCC----
T ss_pred --ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHhcCCC-------CCC----
Confidence 223445689999999999988899999999999999999999999965322111 111100000 000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..++.++.+++.+||+.||++||++.|+++
T Consensus 262 ---------~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 262 ---------KHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp ---------TTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ---------ccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 113345889999999999999999999986
No 201
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=5.2e-39 Score=327.46 Aligned_cols=251 Identities=24% Similarity=0.297 Sum_probs=188.0
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
..++|++.+.||+|+||.||+|.. .+|+.||+|++..... ...+.+.++...++.++||||+++++++.+.+..++|
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 84 (290)
T 3fme_A 5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 84 (290)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence 356889999999999999999985 5899999999965422 2223344555668888999999999999999999999
Q ss_pred EEecCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 467 LEYMPHGSLEKYLHS---SNYILDIYQRLNIMIDVASALEYLHFGYSA-QVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
|||+++ +|.+++.. ....+++..+..++.|++.|++||| ++ +|+||||||+||+++.++.+||+|||++...
T Consensus 85 ~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T 3fme_A 85 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 160 (290)
T ss_dssp EECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred Eehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 999975 88887754 3456899999999999999999999 87 9999999999999999999999999999765
Q ss_pred CCCCCcceeecccCCccccCcccc----CCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccc
Q 005760 543 TREDQSTIQTQTLATIGYMAPEYG----KEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKE 618 (678)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~aPE~~----~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (678)
... .......+|+.|+|||.+ .+..++.++||||+|+++|||++|+.||..................+.
T Consensus 161 ~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~---- 233 (290)
T 3fme_A 161 VDD---VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQ---- 233 (290)
T ss_dssp ------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCC----
T ss_pred ccc---ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCC----
Confidence 432 222334689999999985 566789999999999999999999999975333222222222111100
Q ss_pred cccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 619 IVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.. ...+++++.+++.+||+.||++|||+.|+++
T Consensus 234 -----~~---------~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 234 -----LP---------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp -----CC---------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred -----cc---------cccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 00 0123456889999999999999999999987
No 202
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=2.8e-39 Score=340.16 Aligned_cols=267 Identities=21% Similarity=0.311 Sum_probs=202.7
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 457999999999999999999864 78999999997653 2345678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSA-QVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
|+++++|.+++.... .+++..+..++.|++.|++||| +. +|+||||||+||+++.++.+||+|||++......
T Consensus 112 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 185 (360)
T ss_dssp CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred CCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc--
Confidence 999999999998765 4889999999999999999999 75 8999999999999999999999999998754321
Q ss_pred cceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhh--c----ccC------Cc
Q 005760 548 STIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVN--D----WLP------IS 615 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~--~----~~~------~~ 615 (678)
......+|+.|+|||++.+..++.++||||+||++|||++|+.||............... . ..+ ..
T Consensus 186 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
T 3eqc_A 186 --MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRP 263 (360)
T ss_dssp --C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC--------------------
T ss_pred --cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCc
Confidence 223457899999999999999999999999999999999999999753221110000000 0 000 00
Q ss_pred ccccccCccCCccchhhH-----------HHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 616 TKEIVDPNLLSREDINFV-----------AKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.................. ....++.++.+++.+||+.||++|||+.|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 264 LNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp ----------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred ccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 000000000000000000 00124567899999999999999999999986
No 203
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=4.9e-39 Score=325.20 Aligned_cols=247 Identities=27% Similarity=0.380 Sum_probs=195.6
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|.+.+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 468999999999999999999865 79999999996542 23456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++++|.+++.... .+++..+..++.|++.||+||| +++++|+||+|+||+++.++.+||+|||++.......
T Consensus 90 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~ 165 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165 (276)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred EeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence 99999999999997665 4889999999999999999999 8999999999999999999999999999997654322
Q ss_pred CcceeecccCCccccCccccCCCCC-CccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRV-SANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLL 625 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (678)
......+++.|+|||.+.+..+ +.++||||+|+++|+|++|+.||...... .....+.... ...+
T Consensus 166 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~------~~~~--- 231 (276)
T 2h6d_A 166 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP--TLFKKIRGGV------FYIP--- 231 (276)
T ss_dssp --------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC------CCCC---
T ss_pred ---ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--HHHHHhhcCc------ccCc---
Confidence 2234568999999999887765 68999999999999999999998653211 1111111000 0001
Q ss_pred CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 626 SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..++.++.+++.+||+.||++|||+.|+++
T Consensus 232 ----------~~~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 232 ----------EYLNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp ----------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred ----------hhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 113455889999999999999999999987
No 204
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.5e-38 Score=337.21 Aligned_cols=271 Identities=24% Similarity=0.303 Sum_probs=199.2
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeec-------
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSN------- 459 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~------- 459 (678)
....++|++.+.||+|+||.||+|.. .+|+.||+|++.... ....+|+++++.++||||+++++++..
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 34567899999999999999999975 589999999986442 223479999999999999999998843
Q ss_pred -------------------------------CCeEEEEEEecCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHH
Q 005760 460 -------------------------------EEFKALVLEYMPHGSLEKYLHS---SNYILDIYQRLNIMIDVASALEYL 505 (678)
Q Consensus 460 -------------------------------~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~L 505 (678)
....++||||+++ +|.+.+.. ....+++..+..++.|++.||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L 157 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI 157 (383)
T ss_dssp -------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3348899999984 88777653 344689999999999999999999
Q ss_pred hcCCCCCeEEcCCCCCCeeec-CCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCC-CCCccchHHHHHHH
Q 005760 506 HFGYSAQVIHCDLKPSNVLLD-DNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIM 583 (678)
Q Consensus 506 H~~~~~~ivH~dl~~~Nill~-~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~ 583 (678)
| +++|+||||||+||+++ .++.+||+|||+++...... ......+|+.|+|||.+.+. .++.++||||+||+
T Consensus 158 H---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i 231 (383)
T 3eb0_A 158 H---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE---PSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCV 231 (383)
T ss_dssp H---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS---CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred H---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC---CCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHH
Confidence 9 99999999999999998 68999999999998764332 23345689999999988765 48999999999999
Q ss_pred HHHHHcCCCCCCcccCCccchhhhhhcccCC----------cccccccCccCCccchhhHHHHHHHHHHHHHHhhccccC
Q 005760 584 LMETFTRKKPTDEIFNGEMTLKHWVNDWLPI----------STKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVES 653 (678)
Q Consensus 584 l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~d 653 (678)
+|||++|+.||.+....+ .+...+...... ......-+... ........+..++.++.+++.+||++|
T Consensus 232 l~ell~g~~pf~~~~~~~-~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~d 309 (383)
T 3eb0_A 232 FGELILGKPLFSGETSID-QLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLK-AKDWRKILPEGTPSLAIDLLEQILRYE 309 (383)
T ss_dssp HHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCC-CCCHHHHSCTTCCHHHHHHHHHHCCSS
T ss_pred HHHHHhCCCCCCCCChHH-HHHHHHHHhCCCCHHHHHHhCcccccccCCccC-cccHHhhCCCCCCHHHHHHHHHHccCC
Confidence 999999999997633221 111111100000 00000011111 111111112235677999999999999
Q ss_pred cCCCCCHHHHHH--HHHHHH
Q 005760 654 PEQRINAKEIVT--KLLKIR 671 (678)
Q Consensus 654 P~~Rps~~ell~--~L~~~~ 671 (678)
|++|||+.|+++ .++.++
T Consensus 310 P~~R~t~~e~l~hp~f~~~~ 329 (383)
T 3eb0_A 310 PDLRINPYEAMAHPFFDHLR 329 (383)
T ss_dssp GGGSCCHHHHHTSGGGHHHH
T ss_pred hhhCCCHHHHhcCHHHHHHH
Confidence 999999999984 344443
No 205
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=2.5e-39 Score=354.21 Aligned_cols=250 Identities=23% Similarity=0.347 Sum_probs=204.0
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 457899999999999999999865 89999999996542 23457788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee---cCCCcEEEEeeccccccC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill---~~~~~~kl~Dfg~~~~~~ 543 (678)
|||+.+++|.+++.... .+++..+..++.|++.||+||| +++|+||||||+||++ +.++.+||+|||+++...
T Consensus 105 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 180 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRK-RFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE 180 (484)
T ss_dssp ECCCCSCBHHHHHHTCS-CCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence 99999999999997655 4899999999999999999999 8999999999999999 567899999999998764
Q ss_pred CCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCc
Q 005760 544 REDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPN 623 (678)
Q Consensus 544 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (678)
... ......||+.|+|||++.+ .++.++||||+||++|+|++|..||.+....+. ............
T Consensus 181 ~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~~~~-------- 247 (484)
T 3nyv_A 181 ASK---KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDI-LKKVEKGKYTFE-------- 247 (484)
T ss_dssp CCC---SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCCCCC--------
T ss_pred ccc---ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHH-HHHHHcCCCCCC--------
Confidence 332 2234569999999998865 689999999999999999999999976322111 111111100000
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 624 LLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
......+++++.+++.+||++||++|||+.|+++
T Consensus 248 --------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 248 --------LPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp --------SGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --------CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 0011234566889999999999999999999985
No 206
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=1.1e-38 Score=324.76 Aligned_cols=244 Identities=20% Similarity=0.282 Sum_probs=196.9
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc--CchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY--GRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~l 465 (678)
..++|++.+.||+|+||.||+|... +++.||+|++.... ......+.+|+..+..+ +||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 3467899999999999999999865 79999999997542 23456778899999998 89999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCC--------------
Q 005760 466 VLEYMPHGSLEKYLHSSN---YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDN-------------- 528 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~-------------- 528 (678)
||||+++++|.+++.... ..+++..+..++.|++.||+||| +++|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~ 165 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDD 165 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC----------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCccccccccccc
Confidence 999999999999997642 35899999999999999999999 8999999999999999844
Q ss_pred -----CcEEEEeeccccccCCCCCcceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcccCCcc
Q 005760 529 -----MVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEM 602 (678)
Q Consensus 529 -----~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~ 602 (678)
..+||+|||.+....... ...+|+.|+|||.+.+. .++.++|||||||++|||++|.+|+....
T Consensus 166 ~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~---- 235 (289)
T 1x8b_A 166 WASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD---- 235 (289)
T ss_dssp ----CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH----
T ss_pred ccCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh----
Confidence 489999999998764322 23589999999998766 56689999999999999999988764311
Q ss_pred chhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 603 TLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..........+ ... ..+++++.+++.+||+.||++|||+.|+++
T Consensus 236 ~~~~~~~~~~~---------~~~----------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 236 QWHEIRQGRLP---------RIP----------QVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHHHHTTCCC---------CCS----------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHcCCCC---------CCC----------cccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 11111111100 000 123456889999999999999999999985
No 207
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.1e-39 Score=338.62 Aligned_cols=254 Identities=23% Similarity=0.338 Sum_probs=201.7
Q ss_pred hcCCCCCccccCCCceeEEEEEe----CCCcEEEEEEeeccc----CchhhhHHHHHHHHHhC-CCccceeeeeeeecCC
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL----GDGMEVAMKVFNLQY----GRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEE 461 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~ 461 (678)
.++|++.+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++.+ +||||+++++++.+.+
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 36789999999999999999986 478999999986432 23345677899999999 6999999999999999
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..++||||+++++|.+++.... .+++..+..++.|++.||.||| +++|+||||||+||+++.++.+||+|||+++.
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 208 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKE 208 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred eEEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence 9999999999999999998654 4899999999999999999999 89999999999999999999999999999986
Q ss_pred cCCCCCcceeecccCCccccCccccCCC--CCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccccc
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKEG--RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEI 619 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (678)
..... ........||+.|+|||++.++ .++.++|||||||++|||++|+.||........ ...........
T Consensus 209 ~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~~----- 281 (355)
T 1vzo_A 209 FVADE-TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS-QAEISRRILKS----- 281 (355)
T ss_dssp CCGGG-GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC-HHHHHHHHHHC-----
T ss_pred cccCC-CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccch-HHHHHHHHhcc-----
Confidence 54322 2223345799999999998753 478899999999999999999999975332211 11111111000
Q ss_pred ccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCC-----CHHHHHHH
Q 005760 620 VDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRI-----NAKEIVTK 666 (678)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----s~~ell~~ 666 (678)
.+.. +..++..+.+++.+||+.||++|| +++|+++.
T Consensus 282 -~~~~----------~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 282 -EPPY----------PQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp -CCCC----------CTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred -CCCC----------CcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 0000 012345588999999999999999 99999864
No 208
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.9e-38 Score=328.43 Aligned_cols=252 Identities=24% Similarity=0.299 Sum_probs=197.4
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc--------CchhhhHHHHHHHHHhCCCccceeeeeeeecC
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY--------GRVFKSFDVECEMMKSIRHRNIIKVISSCSNE 460 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~ 460 (678)
..++|.+.+.||+|+||.||+|.. .+++.||||++.... ......+.+|+++++.++||||+++++++...
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 346799999999999999999985 468999999986432 12335688999999999999999999998776
Q ss_pred CeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc---EEEEeec
Q 005760 461 EFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV---AHLSDFG 537 (678)
Q Consensus 461 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~---~kl~Dfg 537 (678)
+ .++||||+++++|.+++.... .+++..+..++.|++.||.||| +++|+||||||+||+++.++. +||+|||
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg 162 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFG 162 (322)
T ss_dssp S-EEEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCCT
T ss_pred c-eEEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccCc
Confidence 5 799999999999999997654 5899999999999999999999 899999999999999987654 9999999
Q ss_pred cccccCCCCCcceeecccCCccccCccccC---CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCC
Q 005760 538 IAKLLTREDQSTIQTQTLATIGYMAPEYGK---EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPI 614 (678)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~ 614 (678)
++...... .......+++.|+|||++. ...++.++|||||||++|+|++|..||........ ....+.....
T Consensus 163 ~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~- 237 (322)
T 2ycf_A 163 HSKILGET---SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS-LKDQITSGKY- 237 (322)
T ss_dssp TCEECCCC---HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSC-HHHHHHHTCC-
T ss_pred cceecccc---cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHH-HHHHHHhCcc-
Confidence 99876422 1223456899999999863 56788999999999999999999999975433221 1111110000
Q ss_pred cccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 615 STKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. ........++.++.+++.+||+.||++||++.|+++
T Consensus 238 -----------~---~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 238 -----------N---FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp -----------C---CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred -----------c---cCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 0 000011234567899999999999999999999984
No 209
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=1.8e-38 Score=334.29 Aligned_cols=267 Identities=23% Similarity=0.297 Sum_probs=201.3
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecC-----CeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNE-----EFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-----~~~ 463 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++..... ...+.+.+|+++++.++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 46899999999999999999985 4789999999964332 2346788999999999999999999998654 468
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
++||||++ ++|.+++.... +++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++....
T Consensus 106 ~iv~e~~~-~~L~~~l~~~~--~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~ 179 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQH--LSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVAD 179 (364)
T ss_dssp EEEEECCS-EEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEcccC-cCHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEecC
Confidence 99999997 49999997654 899999999999999999999 9999999999999999999999999999998765
Q ss_pred CCCCc-ceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccccccc
Q 005760 544 REDQS-TIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVD 621 (678)
Q Consensus 544 ~~~~~-~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (678)
..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+. ....... ......+...
T Consensus 180 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~i~~~-~~~~~~~~~~ 257 (364)
T 3qyz_A 180 PDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ-LNHILGI-LGSPSQEDLN 257 (364)
T ss_dssp GGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGH-HHHHHHH-HCSCCHHHHH
T ss_pred CCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHH-HHHHHHH-hCCCCHHHHH
Confidence 33221 12244579999999997654 4589999999999999999999999976432211 1111110 0000000000
Q ss_pred C-----------ccCCccchhh-HHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 622 P-----------NLLSREDINF-VAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 622 ~-----------~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. .......... .....++.++.+++.+||++||++|||+.|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 258 CIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0 0000000000 000234567899999999999999999999985
No 210
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=7.3e-39 Score=332.11 Aligned_cols=255 Identities=19% Similarity=0.251 Sum_probs=200.9
Q ss_pred HHhhcCCCCC-ccccCCCceeEEEEEeC-CCcEEEEEEeecccC--chhhhHHHHHHHHHhCC-CccceeeeeeeecCCe
Q 005760 388 CRATDGFSEN-NLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIR-HRNIIKVISSCSNEEF 462 (678)
Q Consensus 388 ~~~~~~~~~~-~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~ 462 (678)
....+.|.+. +.||+|+||.||+|... +++.||+|++..... .....+.+|+.+++.++ ||||+++++++.+.+.
T Consensus 24 ~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~ 103 (327)
T 3lm5_A 24 ENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSE 103 (327)
T ss_dssp HHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred HhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCe
Confidence 3445667776 88999999999999854 799999999975432 33567889999999985 6999999999999999
Q ss_pred EEEEEEecCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC---CCcEEEEeecc
Q 005760 463 KALVLEYMPHGSLEKYLHSS-NYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD---NMVAHLSDFGI 538 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~---~~~~kl~Dfg~ 538 (678)
.++||||+++|+|.+++... ...+++..+..++.|++.||+||| +++|+||||||+||+++. ++.+||+|||+
T Consensus 104 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~ 180 (327)
T 3lm5_A 104 IILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGM 180 (327)
T ss_dssp EEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGGG
T ss_pred EEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCcc
Confidence 99999999999999998653 346899999999999999999999 899999999999999987 78999999999
Q ss_pred ccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccc
Q 005760 539 AKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKE 618 (678)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (678)
++...... ......+|+.|+|||++.+..++.++||||+|+++|||++|+.||......+.. .........
T Consensus 181 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~-~~i~~~~~~----- 251 (327)
T 3lm5_A 181 SRKIGHAC---ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETY-LNISQVNVD----- 251 (327)
T ss_dssp CEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH-HHHHHTCCC-----
T ss_pred ccccCCcc---ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHH-HHHHhcccc-----
Confidence 98764322 223457999999999999999999999999999999999999999653322111 111100000
Q ss_pred cccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 619 IVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. .+. ....+++.+.+++.+||+.||++|||++|+++
T Consensus 252 ~-~~~----------~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 252 Y-SEE----------TFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp C-CTT----------TTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred c-Cch----------hhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 0 000 00123456889999999999999999999975
No 211
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.1e-38 Score=332.87 Aligned_cols=251 Identities=25% Similarity=0.332 Sum_probs=198.0
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC-chhhhHHHHHHH-HHhCCCccceeeeeeeecCCeEEEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG-RVFKSFDVECEM-MKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~e~~~-l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
..++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+..|..+ ++.++||||+++++++.+.+..++|
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 356788899999999999999985 5899999999965432 233445555555 7788999999999999999999999
Q ss_pred EEecCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 467 LEYMPHGSLEKYLHS---SNYILDIYQRLNIMIDVASALEYLHFGYSA-QVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
|||+++ +|.+++.. ....+++..+..++.||+.||+||| ++ +|+||||||+||+++.++.+||+|||++...
T Consensus 129 ~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 204 (340)
T 3an0_A 129 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 204 (340)
T ss_dssp ECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCSCCSTTEEECSTTCEEECCCSHHHHH
T ss_pred HHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 999976 99888864 3456899999999999999999999 76 9999999999999999999999999999766
Q ss_pred CCCCCcceeecccCCccccCccccC----CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccc
Q 005760 543 TREDQSTIQTQTLATIGYMAPEYGK----EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKE 618 (678)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~aPE~~~----~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (678)
... .......||+.|+|||++. ...++.++|||||||++|||++|+.||.............+....
T Consensus 205 ~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~------ 275 (340)
T 3an0_A 205 VDS---VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPS------ 275 (340)
T ss_dssp SCH---HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCC------
T ss_pred ccc---cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhcCCC------
Confidence 421 2223356899999999864 346899999999999999999999999753222212222111100
Q ss_pred cccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 619 IVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
+... ...++.++.+++.+||+.||++||++.|+++
T Consensus 276 ---~~~~---------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 276 ---PQLP---------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp ---CCCC---------GGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ---CCCC---------cccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 0000 0123556889999999999999999999987
No 212
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=6.2e-39 Score=331.68 Aligned_cols=262 Identities=21% Similarity=0.336 Sum_probs=202.2
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
....++|++.+.||+|+||.||+|..+. .||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus 29 ~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~i 106 (319)
T 2y4i_B 29 DIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAI 106 (319)
T ss_dssp SSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEE
T ss_pred cCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEE
Confidence 3346789999999999999999998753 49999986542 2344667889999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
||||+++++|.+++...+..+++..+..++.|++.||+||| +++++||||||+||+++ ++.+||+|||++......
T Consensus 107 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~ 182 (319)
T 2y4i_B 107 ITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVL 182 (319)
T ss_dssp ECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC-----
T ss_pred EeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCccccccc
Confidence 99999999999999887767899999999999999999999 89999999999999998 679999999998754321
Q ss_pred C---CcceeecccCCccccCccccCC---------CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC
Q 005760 546 D---QSTIQTQTLATIGYMAPEYGKE---------GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP 613 (678)
Q Consensus 546 ~---~~~~~~~~~~~~~y~aPE~~~~---------~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~ 613 (678)
. .........|++.|+|||.+.+ ..++.++||||||+++|||++|+.||........ ........
T Consensus 183 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~~~-- 259 (319)
T 2y4i_B 183 QAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAI-IWQMGTGM-- 259 (319)
T ss_dssp -----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHH-HHHHHTTC--
T ss_pred cccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHhccCC--
Confidence 1 1122334568899999998764 3578899999999999999999999975322111 11111110
Q ss_pred CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 614 ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
.+.... ..++.++.+++.+||+.||++|||+.|+++.|+++.+..
T Consensus 260 -------~~~~~~---------~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 260 -------KPNLSQ---------IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp -------CCCCCC---------SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred -------CCCCCc---------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 000000 012344789999999999999999999999999987654
No 213
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1.9e-38 Score=327.05 Aligned_cols=254 Identities=25% Similarity=0.379 Sum_probs=196.6
Q ss_pred HhhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccC--chhhhHHHHHHHHHhCC--CccceeeeeeeecCCeEE
Q 005760 389 RATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIR--HRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 389 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~~~~ 464 (678)
...++|++.+.||+|+||.||+|...+++.||+|++..... ...+.+.+|+++++.++ ||||+++++++.+.+..+
T Consensus 25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~ 104 (313)
T 3cek_A 25 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY 104 (313)
T ss_dssp ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEE
T ss_pred eccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEE
Confidence 34567999999999999999999988899999999965432 34577889999999997 599999999999999999
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+||| +.+++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||++++ +.+||+|||++.....
T Consensus 105 lv~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~ 178 (313)
T 3cek_A 105 MVME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQP 178 (313)
T ss_dssp EEEC-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC---
T ss_pred EEEe-cCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccccC
Confidence 9999 55789999998765 5889999999999999999999 899999999999999965 8999999999987654
Q ss_pred CCCcceeecccCCccccCccccCC-----------CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKE-----------GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP 613 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~-----------~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~ 613 (678)
...........+++.|+|||.+.+ ..++.++||||||+++|||++|+.||...................
T Consensus 179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~ 258 (313)
T 3cek_A 179 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHE 258 (313)
T ss_dssp -----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSC
T ss_pred ccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccc
Confidence 333333345578999999998765 468889999999999999999999997533221111111110000
Q ss_pred CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHH
Q 005760 614 ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTK 666 (678)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~ 666 (678)
...+. .++.++.+++.+||+.||++||++.|+++.
T Consensus 259 -----~~~~~-------------~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 259 -----IEFPD-------------IPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp -----CCCCC-------------CSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred -----cCCcc-------------cchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 00000 123458899999999999999999999863
No 214
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=1.1e-38 Score=360.16 Aligned_cols=249 Identities=20% Similarity=0.268 Sum_probs=203.9
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecc---cCchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEE
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQ---YGRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~ 464 (678)
..++|++.+.||+|+||.||+|..+ +++.||||++... .....+.+..|..++..+ +||+|+++++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 4578999999999999999999854 7889999999753 233456778899999987 7999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCC
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~ 544 (678)
+||||+++|+|.++++..+ .+++..+..++.||+.||+||| +++|+||||||+|||++.++++||+|||+++....
T Consensus 419 lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 494 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 494 (674)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred EEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence 9999999999999998765 4899999999999999999999 99999999999999999999999999999986432
Q ss_pred CCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 545 EDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 545 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
.. .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+....+ ........ . ..-|
T Consensus 495 ~~--~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~-~~~~i~~~----~---~~~p-- 562 (674)
T 3pfq_A 495 DG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE-LFQSIMEH----N---VAYP-- 562 (674)
T ss_dssp TT--CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHSS----C---CCCC--
T ss_pred CC--cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHH-HHHHHHhC----C---CCCC--
Confidence 22 22345679999999999999999999999999999999999999997633211 11111110 0 0001
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCH-----HHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINA-----KEIVT 665 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~-----~ell~ 665 (678)
...+.++.+|+.+||++||++||++ +|+++
T Consensus 563 -----------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 563 -----------KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp -----------TTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred -----------ccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence 1234568899999999999999997 66653
No 215
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=7.5e-39 Score=360.53 Aligned_cols=259 Identities=23% Similarity=0.372 Sum_probs=206.2
Q ss_pred hcCCCCCccccCCCceeEEEEEeC----CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG----DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKAL 465 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l 465 (678)
.++|++.+.||+|+||.||+|... .+..||+|.+..... ...+.+.+|+.+++.++||||+++++++.+ +..++
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~~~~l 467 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NPVWI 467 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-CceEE
Confidence 456788899999999999999753 356799999865332 345778899999999999999999999854 56899
Q ss_pred EEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCC
Q 005760 466 VLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRE 545 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~ 545 (678)
||||+++|+|.++++.....+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.....
T Consensus 468 v~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~ 544 (656)
T 2j0j_A 468 IMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 544 (656)
T ss_dssp EEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC-
T ss_pred EEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeecCCC
Confidence 99999999999999877667899999999999999999999 899999999999999999999999999999876433
Q ss_pred CCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCcccccccCcc
Q 005760 546 DQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNL 624 (678)
Q Consensus 546 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (678)
. ........+++.|+|||.+.+..++.++|||||||++|||++ |..||.+....+ ....+..... +.
T Consensus 545 ~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~--~~~~i~~~~~--------~~- 612 (656)
T 2j0j_A 545 T-YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIGRIENGER--------LP- 612 (656)
T ss_dssp ----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHHTCC--------CC-
T ss_pred c-ceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH--HHHHHHcCCC--------CC-
Confidence 2 222334457789999999988899999999999999999997 899987533221 1111110000 00
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHHH
Q 005760 625 LSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDSL 674 (678)
Q Consensus 625 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~~ 674 (678)
.+..+++++.+++.+||+.||++|||+.|+++.|+++.+.-
T Consensus 613 ---------~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~~ 653 (656)
T 2j0j_A 613 ---------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 653 (656)
T ss_dssp ---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ---------CCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence 00134566889999999999999999999999999997654
No 216
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=1.4e-38 Score=325.72 Aligned_cols=267 Identities=24% Similarity=0.321 Sum_probs=201.3
Q ss_pred cCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 468 (678)
++|++.+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57889999999999999999865 78999999986543 2234678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCC
Q 005760 469 YMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQ 547 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~ 547 (678)
|++ ++|.+++.... ..+++..+..++.|++.||+||| +++++||||||+||+++.++.+||+|||.+.......
T Consensus 83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~- 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV- 157 (299)
T ss_dssp CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS-
T ss_pred ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc-
Confidence 997 59999997653 35889999999999999999999 8999999999999999999999999999997664322
Q ss_pred cceeecccCCccccCccccCCCC-CCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCc---cc---c--
Q 005760 548 STIQTQTLATIGYMAPEYGKEGR-VSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPIS---TK---E-- 618 (678)
Q Consensus 548 ~~~~~~~~~~~~y~aPE~~~~~~-~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~---~-- 618 (678)
.......+++.|+|||.+.+.. ++.++||||+|+++|||++|+.||......+. ............ .. .
T Consensus 158 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 235 (299)
T 2r3i_A 158 -RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ-LFRIFRTLGTPDEVVWPGVTSMP 235 (299)
T ss_dssp -BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCCCTTTSTTGGGST
T ss_pred -cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHH-HHHHHHHhCCCchhhhhHhhcCc
Confidence 1223456899999999987765 78999999999999999999999976332211 111111100000 00 0
Q ss_pred cccCccCCccchhhH-HHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 619 IVDPNLLSREDINFV-AKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 619 ~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
...+.........+. ....++.++.+++.+||+.||++|||+.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 236 DYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp TCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 000000000000000 01234567899999999999999999999986
No 217
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=325.64 Aligned_cols=251 Identities=21% Similarity=0.298 Sum_probs=199.0
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc----CchhhhHHHHHHHHHhCCCccceeeeeee--ecCCeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY----GRVFKSFDVECEMMKSIRHRNIIKVISSC--SNEEFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~~~~~~--~~~~~~ 463 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+++++.++||||+++++++ .+.+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 47899999999999999999986 478999999996542 23457789999999999999999999998 455688
Q ss_pred EEEEEecCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 464 ALVLEYMPHGSLEKYLHSS-NYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
++||||++++ +.+++... ...+++..+..++.|++.||.||| +++|+||||||+||+++.++.+||+|||.+...
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~ 159 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEAL 159 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeecccccccc
Confidence 9999999876 77777643 346899999999999999999999 899999999999999999999999999999876
Q ss_pred CCCCCcceeecccCCccccCccccCCCC--CCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccc
Q 005760 543 TREDQSTIQTQTLATIGYMAPEYGKEGR--VSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIV 620 (678)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~--~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (678)
.............+++.|+|||.+.+.. ++.++||||+|+++|||++|+.||...... .....+... .. .
T Consensus 160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i~~~---~~---~ 231 (305)
T 2wtk_C 160 HPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY--KLFENIGKG---SY---A 231 (305)
T ss_dssp CTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHC---CC---C
T ss_pred CccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH--HHHHHHhcC---CC---C
Confidence 5433344445567999999999887644 478999999999999999999999753211 111111100 00 0
Q ss_pred cCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHH
Q 005760 621 DPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTK 666 (678)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~ 666 (678)
.+ ..++.++.+++.+||+.||++|||+.|+++.
T Consensus 232 ~~-------------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 232 IP-------------GDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp CC-------------SSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred CC-------------CccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 00 1234568899999999999999999999863
No 218
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=1.8e-38 Score=324.82 Aligned_cols=253 Identities=23% Similarity=0.344 Sum_probs=203.3
Q ss_pred HhhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC---------chhhhHHHHHHHHHhCC-Cccceeeeeee
Q 005760 389 RATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG---------RVFKSFDVECEMMKSIR-HRNIIKVISSC 457 (678)
Q Consensus 389 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---------~~~~~~~~e~~~l~~l~-h~niv~~~~~~ 457 (678)
...++|++.+.||+|+||.||+|..+ +|+.||+|++..... ...+.+.+|+++++.+. ||||+++++++
T Consensus 14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 93 (298)
T 1phk_A 14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY 93 (298)
T ss_dssp -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence 34578999999999999999999864 789999999975431 23456788999999996 99999999999
Q ss_pred ecCCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeec
Q 005760 458 SNEEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFG 537 (678)
Q Consensus 458 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg 537 (678)
.+.+..++||||+++++|.+++.... .+++..+..++.|++.||.||| +++++|+||+|+||+++.++.+||+|||
T Consensus 94 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg 169 (298)
T 1phk_A 94 ETNTFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFG 169 (298)
T ss_dssp ECSSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred ccCCeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEeccc
Confidence 99999999999999999999998654 4899999999999999999999 9999999999999999999999999999
Q ss_pred cccccCCCCCcceeecccCCccccCccccC------CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcc
Q 005760 538 IAKLLTREDQSTIQTQTLATIGYMAPEYGK------EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDW 611 (678)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~ 611 (678)
++....... ......+++.|+|||++. ...++.++||||+|+++|||++|..||....... .........
T Consensus 170 ~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~ 245 (298)
T 1phk_A 170 FSCQLDPGE---KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML-MLRMIMSGN 245 (298)
T ss_dssp TCEECCTTC---CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTC
T ss_pred chhhcCCCc---ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHH-HHHHHhcCC
Confidence 998764322 223456899999999874 4568899999999999999999999986532211 111111100
Q ss_pred cCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 612 LPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.. ...+ ....++.++.+++.+||+.||++|||+.|+++
T Consensus 246 ~~-----~~~~-----------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 246 YQ-----FGSP-----------EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CC-----CCTT-----------TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred cc-----cCcc-----------cccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 00 0000 00124566889999999999999999999985
No 219
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=6.6e-39 Score=337.01 Aligned_cols=262 Identities=23% Similarity=0.326 Sum_probs=183.0
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecC------C
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNE------E 461 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------~ 461 (678)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... ...+.+.+|+.+++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 47899999999999999999974 5799999999865322 3456778999999999999999999998654 5
Q ss_pred eEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..++|+||+ +++|.+++... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~ 181 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARH 181 (367)
T ss_dssp CCEEEEECC-CEECC-----C--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC------
T ss_pred eEEEEeccc-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeecccccc
Confidence 679999999 67999988763 4899999999999999999999 99999999999999999999999999999976
Q ss_pred cCCCCCcceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccc
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIV 620 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (678)
.... .....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+..... .......+..
T Consensus 182 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~-~~g~p~~~~~ 254 (367)
T 2fst_X 182 TADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID-QLKLILR-LVGTPGAELL 254 (367)
T ss_dssp --------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHH-HHCSCCHHHH
T ss_pred cccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH-HhCCCCHHHH
Confidence 5321 234578999999998876 678999999999999999999999997633211 1111111 0000000000
Q ss_pred cC-----------ccCCccchhhH-HHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 621 DP-----------NLLSREDINFV-AKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 621 ~~-----------~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.. .+.......+. ....+++++.+|+.+||+.||++|||+.|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 255 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp TTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 00 00000000000 00134567899999999999999999999985
No 220
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=7.2e-39 Score=324.50 Aligned_cols=252 Identities=23% Similarity=0.320 Sum_probs=200.7
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeee--cCCeEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCS--NEEFKAL 465 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~--~~~~~~l 465 (678)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+++++.++||||+++++++. ..+..++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 467899999999999999999864 78999999997543 234567889999999999999999999874 4678899
Q ss_pred EEEecCCCCHHHHhhhC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-----eEEcCCCCCCeeecCCCcEEEEeec
Q 005760 466 VLEYMPHGSLEKYLHSS---NYILDIYQRLNIMIDVASALEYLHFGYSAQ-----VIHCDLKPSNVLLDDNMVAHLSDFG 537 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~dl~~~Nill~~~~~~kl~Dfg 537 (678)
||||+++++|.+++... ...+++..++.++.|++.||+||| +.+ |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 99999999999999753 234899999999999999999999 777 9999999999999999999999999
Q ss_pred cccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccc
Q 005760 538 IAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTK 617 (678)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 617 (678)
.+....... .......+++.|+|||.+.+..++.++||||||+++|+|++|+.||...... .....+.... .
T Consensus 162 ~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i~~~~---~- 233 (279)
T 2w5a_A 162 LARILNHDT--SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK--ELAGKIREGK---F- 233 (279)
T ss_dssp HHHHC---C--HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTC---C-
T ss_pred hheeecccc--ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH--HHHHHHhhcc---c-
Confidence 997654321 1123356899999999999888999999999999999999999998753221 1111111000 0
Q ss_pred ccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHH
Q 005760 618 EIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKL 667 (678)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L 667 (678)
+.. +..++.++.+++.+||+.||++||++.|+++.+
T Consensus 234 ----~~~----------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 234 ----RRI----------PYRYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp ----CCC----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred ----ccC----------CcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 000 012345688999999999999999999999754
No 221
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=2.2e-38 Score=340.25 Aligned_cols=197 Identities=23% Similarity=0.318 Sum_probs=171.1
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhC------CCccceeeeeeeecCCeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSI------RHRNIIKVISSCSNEEFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~~~~~~~~~~~~ 463 (678)
..+|++.+.||+|+||.||+|.. .+++.||||++.... .....+.+|+++++.+ .|+||+++++++...+..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 45799999999999999999975 468999999996432 2345677788888877 577999999999999999
Q ss_pred EEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc--EEEEeecccc
Q 005760 464 ALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV--AHLSDFGIAK 540 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~--~kl~Dfg~~~ 540 (678)
++||||+. ++|.+++.... ..+++..+..++.||+.||+||| +++|+||||||+||+++.++. +||+|||++.
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~ 250 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSC 250 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecccce
Confidence 99999996 59999987654 35899999999999999999999 899999999999999999887 9999999997
Q ss_pred ccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcc
Q 005760 541 LLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEI 597 (678)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~ 597 (678)
..... .....+|+.|+|||++.+..++.++|||||||++|||++|+.||.+.
T Consensus 251 ~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 251 YEHQR-----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp ETTCC-----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ecCCc-----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 54322 23457899999999999999999999999999999999999999764
No 222
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=330.44 Aligned_cols=256 Identities=25% Similarity=0.343 Sum_probs=198.1
Q ss_pred HHHHHhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhC-CCccceeeeeeeec---
Q 005760 385 LELCRATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSI-RHRNIIKVISSCSN--- 459 (678)
Q Consensus 385 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~--- 459 (678)
.++....++|++.+.||+|+||.||+|.. .+++.||+|++.... ...+.+.+|+.+++.+ +||||+++++++..
T Consensus 17 ~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 17 SALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred hhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 34445678899999999999999999986 578999999997543 3457788999999998 79999999999866
Q ss_pred ---CCeEEEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEe
Q 005760 460 ---EEFKALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSD 535 (678)
Q Consensus 460 ---~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~D 535 (678)
.+..++||||+++++|.+++.... ..++...+..++.|++.||+||| +.+|+|+||||+||+++.++.+||+|
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~D 172 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVD 172 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECC
T ss_pred ccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEee
Confidence 468899999999999999998643 35889999999999999999999 89999999999999999999999999
Q ss_pred eccccccCCCCCcceeecccCCccccCccccC-----CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhc
Q 005760 536 FGIAKLLTREDQSTIQTQTLATIGYMAPEYGK-----EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVND 610 (678)
Q Consensus 536 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~ 610 (678)
||++...... ........+++.|+|||.+. +..++.++|||||||++|+|++|+.||........ .......
T Consensus 173 fg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~~ 249 (326)
T 2x7f_A 173 FGVSAQLDRT--VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRA-LFLIPRN 249 (326)
T ss_dssp CTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHHHHHS
T ss_pred CcCceecCcC--ccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHH-HHHhhcC
Confidence 9999765422 11233456899999999886 56688999999999999999999999865322111 1110000
Q ss_pred ccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 611 WLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.. +.... ..++.++.+++.+||..||++||++.|+++
T Consensus 250 ~~---------~~~~~---------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 250 PA---------PRLKS---------KKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp CC---------CCCSC---------SCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cc---------ccCCc---------cccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 00 00000 113456889999999999999999999987
No 223
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=2.8e-38 Score=337.22 Aligned_cols=265 Identities=22% Similarity=0.228 Sum_probs=199.6
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCC--------Cccceeeeeeee---
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR--------HRNIIKVISSCS--- 458 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~~~~~~~--- 458 (678)
.++|++.+.||+|+||.||+|.. .+++.||||++... ....+.+.+|+++++.++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 36799999999999999999975 57899999999643 234567889999999985 788999999987
Q ss_pred -cCCeEEEEEEecCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEcCCCCCCeeecCCC------
Q 005760 459 -NEEFKALVLEYMPHGSLEKYLHSS-NYILDIYQRLNIMIDVASALEYLHFGYSA-QVIHCDLKPSNVLLDDNM------ 529 (678)
Q Consensus 459 -~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~dl~~~Nill~~~~------ 529 (678)
+....++||||+ ++++.+++... ...+++..+..++.||+.||+||| ++ +|+||||||+||+++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~~~~~ 190 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQYIRRL 190 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchhhhhh
Confidence 567889999999 55666666544 356899999999999999999999 87 999999999999999775
Q ss_pred -------------------------------------------cEEEEeeccccccCCCCCcceeecccCCccccCcccc
Q 005760 530 -------------------------------------------VAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYG 566 (678)
Q Consensus 530 -------------------------------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~ 566 (678)
.+||+|||++...... .....+|+.|+|||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~ 265 (397)
T 1wak_A 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVL 265 (397)
T ss_dssp HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHH
T ss_pred hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChhh
Confidence 8999999999865432 2345789999999999
Q ss_pred CCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccch----hhhhhcccCCc--------------------ccccccC
Q 005760 567 KEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTL----KHWVNDWLPIS--------------------TKEIVDP 622 (678)
Q Consensus 567 ~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~----~~~~~~~~~~~--------------------~~~~~~~ 622 (678)
.+..++.++|||||||++|||++|+.||......+... ...+....... ...+.+.
T Consensus 266 ~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (397)
T 1wak_A 266 IGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKL 345 (397)
T ss_dssp HTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCC
T ss_pred cCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccccccc
Confidence 99999999999999999999999999997643322110 00000000000 0000000
Q ss_pred ccCCcc---chhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 623 NLLSRE---DINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 623 ~~~~~~---~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
...... ..........+.++.+|+.+||+.||++|||+.|+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 346 KPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred CCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 000000 0000011356778999999999999999999999985
No 224
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=337.84 Aligned_cols=200 Identities=23% Similarity=0.348 Sum_probs=155.2
Q ss_pred cCCCC-CccccCCCceeEEEEEeC---CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeee--ecCCeEEE
Q 005760 392 DGFSE-NNLIGRGSFGSVFKARLG---DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSC--SNEEFKAL 465 (678)
Q Consensus 392 ~~~~~-~~~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~--~~~~~~~l 465 (678)
+.|++ +++||+|+||.||+|+.+ +++.||+|++... .....+.+|+.+++.++||||+++++++ ......++
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 34655 568999999999999854 5789999998643 2335788999999999999999999998 44778999
Q ss_pred EEEecCCCCHHHHhhhCC--------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee----cCCCcEEE
Q 005760 466 VLEYMPHGSLEKYLHSSN--------YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL----DDNMVAHL 533 (678)
Q Consensus 466 v~e~~~~~~L~~~l~~~~--------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill----~~~~~~kl 533 (678)
||||+++ +|.+++.... ..+++..++.++.||+.||+||| +++|+||||||+||++ +.++.+||
T Consensus 98 v~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 98 LFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEE
Confidence 9999965 8888775321 24889999999999999999999 9999999999999999 77899999
Q ss_pred EeeccccccCCCCC-cceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcc
Q 005760 534 SDFGIAKLLTREDQ-STIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEI 597 (678)
Q Consensus 534 ~Dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~ 597 (678)
+|||+++....... ........||+.|+|||++.+. .++.++||||+||++|||++|+.||...
T Consensus 174 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 174 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp CCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred EECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 99999987643211 1233456789999999988774 5899999999999999999999999754
No 225
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=3.2e-38 Score=335.45 Aligned_cols=263 Identities=24% Similarity=0.316 Sum_probs=193.2
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCC------eEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE------FKA 464 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~ 464 (678)
..+|++.+.||+|+||.||+|+...+..||+|++.... ....+|+++++.++||||+++++++...+ ..+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~----~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK----RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc----chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 35689999999999999999998777779999885432 22246999999999999999999984432 378
Q ss_pred EEEEecCCCCHHHHhh--hCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec-CCCcEEEEeeccccc
Q 005760 465 LVLEYMPHGSLEKYLH--SSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD-DNMVAHLSDFGIAKL 541 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~--~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~-~~~~~kl~Dfg~~~~ 541 (678)
+||||++++.+..... .....+++..+..++.|++.||+||| +++|+||||||+||+++ .++.+||+|||+++.
T Consensus 115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~ 191 (394)
T 4e7w_A 115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKI 191 (394)
T ss_dssp EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence 9999998744333322 23446899999999999999999999 99999999999999999 799999999999987
Q ss_pred cCCCCCcceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCC------
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPI------ 614 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~------ 614 (678)
..... ......+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+....+ .+...+......
T Consensus 192 ~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~-~l~~i~~~~g~p~~~~~~ 267 (394)
T 4e7w_A 192 LIAGE---PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGID-QLVEIIKVLGTPSREQIK 267 (394)
T ss_dssp CCTTC---CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCHHHHH
T ss_pred ccCCC---CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHHH
Confidence 64322 22346789999999988765 58999999999999999999999997633211 111111100000
Q ss_pred ----cccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 615 ----STKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 615 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
......-+.. .........+..+++++.+++.+||++||++|||+.|+++
T Consensus 268 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 268 TMNPNYMEHKFPQI-RPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHCGGGSSSCCCCC-CCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred hhChhhhhhccccc-cCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 0000000000 0011111111235667999999999999999999999986
No 226
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=6.9e-38 Score=323.89 Aligned_cols=268 Identities=22% Similarity=0.280 Sum_probs=194.8
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeee-----------
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCS----------- 458 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~----------- 458 (678)
.++|++.+.||+|+||.||+|... +++.||+|++........+.+.+|+++++.++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 468999999999999999999865 58999999997665556678899999999999999999998873
Q ss_pred ---cCCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec-CCCcEEEE
Q 005760 459 ---NEEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD-DNMVAHLS 534 (678)
Q Consensus 459 ---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~-~~~~~kl~ 534 (678)
+.+..++||||++ |+|.+++... .+++..+..++.|++.||+||| +++|+||||||+||+++ .++.+||+
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~ 163 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG--PLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIG 163 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEEEC
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC--CccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEEEc
Confidence 4467899999997 5999999754 4889999999999999999999 89999999999999997 57799999
Q ss_pred eeccccccCCCCC-cceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc
Q 005760 535 DFGIAKLLTREDQ-STIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL 612 (678)
Q Consensus 535 Dfg~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~ 612 (678)
|||++........ ........++..|+|||.+.+ ..++.++|||||||++|||++|+.||......+ ..........
T Consensus 164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~ 242 (320)
T 2i6l_A 164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE-QMQLILESIP 242 (320)
T ss_dssp CCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHSC
T ss_pred cCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcC
Confidence 9999986543211 122334567899999998765 678999999999999999999999997633211 1111111000
Q ss_pred CCc---cccc-------ccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 613 PIS---TKEI-------VDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 613 ~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
... ..++ ..................++.++.+++.+||+.||++|||+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 243 VVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp CCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 000 0000 0000000000000011235677999999999999999999999986
No 227
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=6.4e-38 Score=328.93 Aligned_cols=267 Identities=24% Similarity=0.286 Sum_probs=199.0
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC-chhhhHHHHHHHHHhCCCccceeeeeeeecC-----CeE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG-RVFKSFDVECEMMKSIRHRNIIKVISSCSNE-----EFK 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-----~~~ 463 (678)
.++|++.+.||+|+||.||+|... +|+.||||++..... .....+.+|+++++.++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 568999999999999999999864 789999999964322 3346678999999999999999999987654 678
Q ss_pred EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccC
Q 005760 464 ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 543 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~ 543 (678)
++||||++ ++|.+++... .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++....
T Consensus 90 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ--MLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID 163 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEeccC-ccHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence 99999997 5999999774 4899999999999999999999 8999999999999999999999999999998764
Q ss_pred CCCCcc--------eeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc-C
Q 005760 544 REDQST--------IQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL-P 613 (678)
Q Consensus 544 ~~~~~~--------~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~-~ 613 (678)
...... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+...... ......... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~ 242 (353)
T 2b9h_A 164 ESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQ-LLLIFGIIGTP 242 (353)
T ss_dssp ----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCC
T ss_pred cccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHH-HHHHHHHhCCC
Confidence 322111 1223568999999997654 6789999999999999999999999976332111 000000000 0
Q ss_pred C---ccccccc--------C-ccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 614 I---STKEIVD--------P-NLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 614 ~---~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. ....... . ......... .....+++++.+++.+||+.||++|||+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 243 HSDNDLRCIESPRAREYIKSLPMYPAAPLE-KMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp CSTTTTTTCCCHHHHHHHHTSCCCCCCCHH-HHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred chhccccccccchhhHHhhcccCCCCcchh-hhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 0 0000000 0 000000000 011245677899999999999999999999986
No 228
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=9.3e-38 Score=323.91 Aligned_cols=268 Identities=26% Similarity=0.378 Sum_probs=202.1
Q ss_pred HhhcCCCCCccccCCCceeEEEEEe--CCCcEEEEEEeecccC--chhhhHHHHHHHHHhC---CCccceeeeeeee---
Q 005760 389 RATDGFSENNLIGRGSFGSVFKARL--GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSI---RHRNIIKVISSCS--- 458 (678)
Q Consensus 389 ~~~~~~~~~~~ig~G~~g~V~~~~~--~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l---~h~niv~~~~~~~--- 458 (678)
...++|++.+.||+|+||.||+|.. .+|+.||+|++..... .....+.+|+.+++.+ +||||+++++++.
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 3567899999999999999999986 4688999999865432 2335677888887776 8999999999986
Q ss_pred --cCCeEEEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEe
Q 005760 459 --NEEFKALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSD 535 (678)
Q Consensus 459 --~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~D 535 (678)
.....++||||++ |+|.+++.... ..+++..+..++.|++.||.||| +++|+||||||+||+++.++.+||+|
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECS
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEec
Confidence 5678899999997 59999997654 34889999999999999999999 89999999999999999999999999
Q ss_pred eccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc-C-
Q 005760 536 FGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL-P- 613 (678)
Q Consensus 536 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~-~- 613 (678)
||++...... .......+++.|+|||.+.+..++.++||||+||++|||++|+.||.+..... .......... +
T Consensus 164 fg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~ 239 (326)
T 1blx_A 164 FGLARIYSFQ---MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD-QLGKILDVIGLPG 239 (326)
T ss_dssp CCSCCCCCGG---GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCC
T ss_pred CcccccccCC---CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHcCCCC
Confidence 9999765422 22345678999999999999899999999999999999999999997533211 1111111000 0
Q ss_pred -Ccccccc-cC--ccC--CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 614 -ISTKEIV-DP--NLL--SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 614 -~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....... .+ ... ...... .....++.++.+++.+||+.||++|||+.|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 240 EEDWPRDVALPRQAFHSKSAQPIE-KFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp GGGSCTTCSSCGGGSCCCCCCCGG-GTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cccCccccccchhhhcccCcchhh-hccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0000000 00 000 000000 001134566889999999999999999999984
No 229
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=3.6e-38 Score=332.74 Aligned_cols=261 Identities=22% Similarity=0.294 Sum_probs=195.9
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCeE----
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFK---- 463 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~---- 463 (678)
.++|.+.+.||+|+||.||+|.. .+|+.||+|++..... ...+.+.+|+.+++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 46899999999999999999985 4799999999965432 2356788999999999999999999999876654
Q ss_pred --EEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 464 --ALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 464 --~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
++||||+. ++|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 193 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH 193 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred eEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence 99999997 588888743 3899999999999999999999 89999999999999999999999999999975
Q ss_pred cCCCCCcceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccc
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIV 620 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (678)
.... .....+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||.+....+ ........ ......+..
T Consensus 194 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~-~~~~~~~~~ 266 (371)
T 4exu_A 194 ADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKV-TGVPGTEFV 266 (371)
T ss_dssp -----------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHH-HCCCCHHHH
T ss_pred cccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHH-hCCCcHHHH
Confidence 5322 234578999999998877 678999999999999999999999997632211 11111110 000000000
Q ss_pred cC-----------ccCCccchhhH-HHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 621 DP-----------NLLSREDINFV-AKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 621 ~~-----------~~~~~~~~~~~-~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.. ........... ....+++++.+++.+||+.||++|||+.|+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 267 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp TTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 00 00000000000 01234677999999999999999999999985
No 230
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=6.7e-38 Score=321.23 Aligned_cols=252 Identities=23% Similarity=0.356 Sum_probs=192.1
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeec----------
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSN---------- 459 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~---------- 459 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++... ....+.+.+|+.+++.++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 46789999999999999999985 47999999999643 2345778899999999999999999998754
Q ss_pred ---CCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEee
Q 005760 460 ---EEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDF 536 (678)
Q Consensus 460 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Df 536 (678)
.+..++||||+++++|.+++......+++..++.++.|++.||+||| +++|+||||||+||+++.++.+||+||
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~kl~df 160 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDF 160 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCC
T ss_pred cccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEEEeeC
Confidence 45789999999999999999877667888999999999999999999 899999999999999999999999999
Q ss_pred ccccccCCCC------------CcceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcccCCccc
Q 005760 537 GIAKLLTRED------------QSTIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMT 603 (678)
Q Consensus 537 g~~~~~~~~~------------~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~ 603 (678)
|++....... .........+++.|+|||.+.+. .++.++||||+||++|||++ ||........
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~~- 236 (303)
T 1zy4_A 161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVN- 236 (303)
T ss_dssp CCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHH-
T ss_pred cchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHHH-
Confidence 9997654221 01223345689999999998764 68999999999999999998 5432111111
Q ss_pred hhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 604 LKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
....+..... ...+. .. ..++..+.+++.+||+.||++|||+.|+++
T Consensus 237 ~~~~~~~~~~-----~~~~~-~~---------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 237 ILKKLRSVSI-----EFPPD-FD---------DNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp HHHHHHSTTC-----CCCTT-CC---------TTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHhcccccc-----ccCcc-cc---------ccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 1111110000 00000 00 123455789999999999999999999986
No 231
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=7.3e-38 Score=335.43 Aligned_cols=261 Identities=25% Similarity=0.325 Sum_probs=192.9
Q ss_pred cCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeec------CCeEE
Q 005760 392 DGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSN------EEFKA 464 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~------~~~~~ 464 (678)
.+|+..+.||+|+||.||+|... +|+.||||++.... ....+|+++++.++||||+++++++.. ....+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 46888999999999999999864 69999999986432 233479999999999999999998743 22467
Q ss_pred EEEEecCCCCHHHHhh---hCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCC-CcEEEEeecccc
Q 005760 465 LVLEYMPHGSLEKYLH---SSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDN-MVAHLSDFGIAK 540 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~-~~~kl~Dfg~~~ 540 (678)
+||||+++ ++.+.+. .....+++..+..++.||+.||+||| +++|+||||||+|||++.+ +.+||+|||+++
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~ 205 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK 205 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence 99999976 6666654 23456899999999999999999999 9999999999999999955 678999999998
Q ss_pred ccCCCCCcceeecccCCccccCccccCCC-CCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC------
Q 005760 541 LLTREDQSTIQTQTLATIGYMAPEYGKEG-RVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP------ 613 (678)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~------ 613 (678)
...... ......+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+....+ .+...+.....
T Consensus 206 ~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~-~l~~i~~~lg~p~~~~~ 281 (420)
T 1j1b_A 206 QLVRGE---PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD-QLVEIIKVLGTPTREQI 281 (420)
T ss_dssp ECCTTC---CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCSCCHHHH
T ss_pred hcccCC---CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHH
Confidence 764322 22345789999999988765 68999999999999999999999997633211 11111111000
Q ss_pred ----CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 614 ----ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 614 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
........+.... ...........++++.+|+.+||++||++||++.|+++
T Consensus 282 ~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 282 REMNPNYTEFKFPQIKA-HPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHHCSCCCCCCCCCCCC-CCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhhChhhhhhccCccCC-CCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 0000111111100 00000011234567999999999999999999999985
No 232
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=339.32 Aligned_cols=303 Identities=23% Similarity=0.223 Sum_probs=273.1
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
+|+|++|++++..|..|..+++|++|+|++|.|+++.|++|.++++|++|+|++|.++.++.. .|.++++|++|+
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~ 110 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-----VFTGLSNLTKLD 110 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-----SSTTCTTCCEEE
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-----cccCCCCCCEEE
Confidence 378999999988889999999999999999999998899999999999999999999988754 488999999999
Q ss_pred CccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcC
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKL 160 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i 160 (678)
|++|.+.+..+.. +..++ +|++|+|++|.+.+..+..|.++++|++|+|++|++++..+..|.++++|+.|+|++|.+
T Consensus 111 Ls~n~i~~~~~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 111 ISENKIVILLDYM-FQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTSCCCEECTTT-TTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCCccccCChhH-ccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 9999998887655 67777 899999999999999999999999999999999999977777899999999999999999
Q ss_pred CCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccCCCCccc
Q 005760 161 EGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEI 239 (678)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~ 239 (678)
++..+..|..+++|+.|++++|.+.+.++..+....+|+.|+|++|.|+.+|. .+..+++|+.|+|++|.+++..+..|
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 97778889999999999999998887777766667799999999999999985 68899999999999999998888777
Q ss_pred cccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC-CccccccccccccCccccCCCC
Q 005760 240 GNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPN 318 (678)
Q Consensus 240 ~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~l~~~~~~~n~~~c~~~~ 318 (678)
.+++ +|+.|+|++|++++..|..+..+++|+.|++++|.++...+.. ..+..++.+++.+||+.|+|+.
T Consensus 269 ~~l~----------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 269 HELL----------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp TTCT----------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred cccc----------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 7776 9999999999999988999999999999999999999776654 6678899999999999999875
Q ss_pred CC
Q 005760 319 LR 320 (678)
Q Consensus 319 ~~ 320 (678)
.|
T Consensus 339 ~~ 340 (477)
T 2id5_A 339 LW 340 (477)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 233
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=7.6e-38 Score=324.69 Aligned_cols=253 Identities=26% Similarity=0.317 Sum_probs=177.6
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC-chhhhHHHHHH-HHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG-RVFKSFDVECE-MMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~e~~-~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
.++|++.+.||+|+||.||+|.. .+|+.||+|++..... .....+..|+. +++.++||||+++++++.+.+..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 46889999999999999999986 4799999999975432 23344555555 677789999999999999999999999
Q ss_pred EecCCCCHHHHhhh----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 468 EYMPHGSLEKYLHS----SNYILDIYQRLNIMIDVASALEYLHFGYSA-QVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 468 e~~~~~~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
||+++ +|.+++.. ....+++..+..++.|++.|+.||| +. +|+||||||+||+++.++.+||+|||++...
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 99975 88887753 2346899999999999999999999 77 9999999999999999999999999999765
Q ss_pred CCCCCcceeecccCCccccCcccc----CCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccc
Q 005760 543 TREDQSTIQTQTLATIGYMAPEYG----KEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKE 618 (678)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~aPE~~----~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (678)
.... ......+++.|+|||.+ .+..++.++||||||+++|||++|+.||................. .
T Consensus 177 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~----~-- 247 (327)
T 3aln_A 177 VDSI---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGD----P-- 247 (327)
T ss_dssp --------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSC----C--
T ss_pred cccc---ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCC----C--
Confidence 4321 22334689999999998 456789999999999999999999999975332211111111100 0
Q ss_pred cccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 619 IVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
+...... ...+++++.+++.+||+.||++||++.|+++
T Consensus 248 ---~~~~~~~------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 248 ---PQLSNSE------EREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp ---CCCCCCS------SCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ---CCCCCcc------cccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 0000000 0123456889999999999999999999986
No 234
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=4.6e-38 Score=319.95 Aligned_cols=253 Identities=22% Similarity=0.302 Sum_probs=203.1
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeeccc--CchhhhHHHHHHHHHhCCCccceeeeeeeecCCeEE
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQY--GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKA 464 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~ 464 (678)
....++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..+
T Consensus 18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (287)
T 2wei_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (287)
T ss_dssp HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence 445678999999999999999999865 78999999996543 234577889999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCC---CcEEEEeeccccc
Q 005760 465 LVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDN---MVAHLSDFGIAKL 541 (678)
Q Consensus 465 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~---~~~kl~Dfg~~~~ 541 (678)
+|+||+++++|.+++.... .+++..+..++.|++.||.||| +++++||||+|+||+++.+ +.+||+|||++..
T Consensus 98 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~ 173 (287)
T 2wei_A 98 IVGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (287)
T ss_dssp EEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred EEEEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCccee
Confidence 9999999999999887654 4899999999999999999999 8999999999999999754 4799999999976
Q ss_pred cCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccccccc
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVD 621 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (678)
..... ......+++.|+|||.+.+ .++.++||||+|+++|+|++|..||......+ .............
T Consensus 174 ~~~~~---~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~~------ 242 (287)
T 2wei_A 174 FQQNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD-ILKRVETGKYAFD------ 242 (287)
T ss_dssp BCCCS---SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCCCC------
T ss_pred ecCCC---ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHcCCCCCC------
Confidence 54322 1223458899999998865 48999999999999999999999987532211 1111111100000
Q ss_pred CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 622 PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
......++.++.+++.+||+.||++|||+.|+++
T Consensus 243 ----------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 243 ----------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp ----------SGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred ----------chhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 0001123556889999999999999999999987
No 235
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=1.2e-37 Score=335.14 Aligned_cols=251 Identities=23% Similarity=0.359 Sum_probs=186.8
Q ss_pred cCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEEEEEec
Q 005760 392 DGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKALVLEYM 470 (678)
Q Consensus 392 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~ 470 (678)
+.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|+++++.+ +||||+++++++.+.+..++||||+
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~ 91 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC 91 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence 344556889999999998776668999999998653 235677899999876 8999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCC------CHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCC-------------CcE
Q 005760 471 PHGSLEKYLHSSNYIL------DIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDN-------------MVA 531 (678)
Q Consensus 471 ~~~~L~~~l~~~~~~~------~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~-------------~~~ 531 (678)
+ |+|.+++....... ++..++.++.||+.||+||| +++|+||||||+||+++.+ +.+
T Consensus 92 ~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~ 167 (434)
T 2rio_A 92 N-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRI 167 (434)
T ss_dssp S-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred C-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEE
Confidence 6 59999998654311 22245679999999999999 8999999999999999754 489
Q ss_pred EEEeeccccccCCCCCc--ceeecccCCccccCccccCC-------CCCCccchHHHHHHHHHHHHc-CCCCCCcccCCc
Q 005760 532 HLSDFGIAKLLTREDQS--TIQTQTLATIGYMAPEYGKE-------GRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGE 601 (678)
Q Consensus 532 kl~Dfg~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~-------~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~ 601 (678)
||+|||+++........ .......||+.|+|||++.+ ..++.++||||+||++|||++ |..||.......
T Consensus 168 kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~ 247 (434)
T 2rio_A 168 LISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE 247 (434)
T ss_dssp EECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH
T ss_pred EEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH
Confidence 99999999876543221 12234579999999998865 568999999999999999999 899986533221
Q ss_pred cchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 602 MTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. ......... +.. .......++.++.+++.+||+.||++|||+.|+++
T Consensus 248 ~---~i~~~~~~~-------~~~------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 248 S---NIIRGIFSL-------DEM------KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp H---HHHHTCCCC-------CCC------TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred H---HHhcCCCCc-------ccc------cccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 1 111111100 000 00011245677999999999999999999999985
No 236
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=3.2e-37 Score=324.50 Aligned_cols=274 Identities=20% Similarity=0.254 Sum_probs=190.4
Q ss_pred HHHHHhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeecCC--
Q 005760 385 LELCRATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSNEE-- 461 (678)
Q Consensus 385 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-- 461 (678)
.......++|++.+.||+|+||.||+|.. .+|+.||||++.... .......+|++.++.++||||+++++++...+
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 45567788999999999999999999986 478999999986542 33456677888889999999999999985533
Q ss_pred -----eEEEEEEecCCCCHHHHhh---hCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC-CCcEE
Q 005760 462 -----FKALVLEYMPHGSLEKYLH---SSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD-NMVAH 532 (678)
Q Consensus 462 -----~~~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~-~~~~k 532 (678)
..++||||+++ +|.+.+. .....+++..+..++.|++.|+.||| .++++|+||||||+||+++. ++.+|
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH-~~~~~ivH~Dlkp~NIll~~~~~~~k 172 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLH-LPSVNVCHRDIKPHNVLVNEADGTLK 172 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHT-STTTCCBCSCCCGGGEEEETTTTEEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHh-CCCCCeecCcCCHHHEEEeCCCCcEE
Confidence 27899999976 5554443 23345889999999999999999999 33688999999999999996 89999
Q ss_pred EEeeccccccCCCCCcceeecccCCccccCccccCCCC-CCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcc
Q 005760 533 LSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGR-VSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDW 611 (678)
Q Consensus 533 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~ 611 (678)
|+|||++....... ......+|+.|+|||++.+.. ++.++|||||||++|||++|+.||....... .........
T Consensus 173 l~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~-~~~~~~~~~ 248 (360)
T 3e3p_A 173 LCDFGSAKKLSPSE---PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAG-QLHEIVRVL 248 (360)
T ss_dssp ECCCTTCBCCCTTS---CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHH
T ss_pred EeeCCCceecCCCC---CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHH-HHHHHHHHc
Confidence 99999998764332 223456899999999886654 8999999999999999999999997632211 111111100
Q ss_pred c--CCcccccccCccC-----CccchhhH-----HHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 612 L--PISTKEIVDPNLL-----SREDINFV-----AKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 612 ~--~~~~~~~~~~~~~-----~~~~~~~~-----~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
. +.......++... ........ ....++.++.+++.+||++||++|||+.|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 249 GCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp CCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 0 0000000000000 00000000 00124677999999999999999999999985
No 237
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=4.3e-37 Score=320.59 Aligned_cols=264 Identities=19% Similarity=0.276 Sum_probs=201.2
Q ss_pred hcCCCCCccccCCCceeEEEEEe--CCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCcc------ceeeeeeeecCCe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL--GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRN------IIKVISSCSNEEF 462 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~--~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~~~~~~~~~~~ 462 (678)
.++|++.+.||+|+||.||+|.. .+++.||+|++... ....+.+.+|+++++.++|++ ++++++++.+.+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 46899999999999999999975 36899999998643 234567888999999887664 9999999999999
Q ss_pred EEEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC--------------
Q 005760 463 KALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD-------------- 527 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~-------------- 527 (678)
.++||||+ +++|.+++.... ..+++..+..++.|++.||+||| +++|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCccccc
Confidence 99999999 889999997664 35889999999999999999999 899999999999999987
Q ss_pred -----CCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCcc
Q 005760 528 -----NMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEM 602 (678)
Q Consensus 528 -----~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~ 602 (678)
++.+||+|||+++..... .....+|+.|+|||++.+..++.++||||+||++|||++|..||......+.
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~ 242 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEH 242 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHH
T ss_pred cccccCCCceEeeCcccccCccc-----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHH
Confidence 678999999999764322 2345789999999999998999999999999999999999999975332211
Q ss_pred chhhhhhcc--cCCcc------ccccc---CccCCcc-------------chhhHHHHHHHHHHHHHHhhccccCcCCCC
Q 005760 603 TLKHWVNDW--LPIST------KEIVD---PNLLSRE-------------DINFVAKEQCVSFVFNVAMECTVESPEQRI 658 (678)
Q Consensus 603 ~~~~~~~~~--~~~~~------~~~~~---~~~~~~~-------------~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp 658 (678)
........ .+... ..... ....... .........+++++.+++.+||+.||++||
T Consensus 243 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 321 (339)
T 1z57_A 243 -LAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRI 321 (339)
T ss_dssp -HHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred -HHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccccc
Confidence 11000000 00000 00000 0000000 000001124567899999999999999999
Q ss_pred CHHHHHH
Q 005760 659 NAKEIVT 665 (678)
Q Consensus 659 s~~ell~ 665 (678)
|+.|+++
T Consensus 322 t~~ell~ 328 (339)
T 1z57_A 322 TLREALK 328 (339)
T ss_dssp CHHHHTT
T ss_pred CHHHHhc
Confidence 9999985
No 238
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=3.6e-38 Score=325.88 Aligned_cols=245 Identities=22% Similarity=0.287 Sum_probs=200.0
Q ss_pred HHHHhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCc------hhhhHHHHHHHHHhCC--Cccceeeeee
Q 005760 386 ELCRATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGR------VFKSFDVECEMMKSIR--HRNIIKVISS 456 (678)
Q Consensus 386 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~--h~niv~~~~~ 456 (678)
+.....++|++.+.||+|+||.||+|.. .+++.||||++...... ..+.+..|+.+++.++ ||||++++++
T Consensus 37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~ 116 (320)
T 3a99_A 37 EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW 116 (320)
T ss_dssp ---CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEE
T ss_pred ccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEE
Confidence 3344567899999999999999999974 57899999999764321 2356778999999996 5999999999
Q ss_pred eecCCeEEEEEEecCC-CCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec-CCCcEEEE
Q 005760 457 CSNEEFKALVLEYMPH-GSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD-DNMVAHLS 534 (678)
Q Consensus 457 ~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~-~~~~~kl~ 534 (678)
+.+.+..++|+|++.+ ++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++ .++.+||+
T Consensus 117 ~~~~~~~~lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~ 192 (320)
T 3a99_A 117 FERPDSFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLI 192 (320)
T ss_dssp EECSSEEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEEC
T ss_pred EecCCcEEEEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEe
Confidence 9999999999999976 89999998754 4899999999999999999999 99999999999999999 78999999
Q ss_pred eeccccccCCCCCcceeecccCCccccCccccCCCCC-CccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccC
Q 005760 535 DFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRV-SANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLP 613 (678)
Q Consensus 535 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~ 613 (678)
|||++...... ......+|+.|+|||++.+..+ +.++||||||+++|||++|+.||..... ......
T Consensus 193 Dfg~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-------~~~~~~- 260 (320)
T 3a99_A 193 DFGSGALLKDT----VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE-------IIRGQV- 260 (320)
T ss_dssp CCTTCEECCSS----CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-------HHHCCC-
T ss_pred eCccccccccc----cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh-------hhcccc-
Confidence 99999876432 2234568999999998877665 6789999999999999999999865211 111000
Q ss_pred CcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 614 ISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..+ ..+++++.+++.+||+.||++|||+.|+++
T Consensus 261 ------~~~-------------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 261 ------FFR-------------QRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp ------CCS-------------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ------ccc-------------ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000 113456889999999999999999999986
No 239
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=334.18 Aligned_cols=250 Identities=20% Similarity=0.372 Sum_probs=188.1
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEEEEEe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~ 469 (678)
..+|...+.||+|+||+||.....+++.||||++... ....+.+|+++++.+ +||||+++++++.+.+..++||||
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE---CFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT---TEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 4568888999999999976555568999999998643 234567899999999 799999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC-----CCcEEEEeeccccccCC
Q 005760 470 MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD-----NMVAHLSDFGIAKLLTR 544 (678)
Q Consensus 470 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~-----~~~~kl~Dfg~~~~~~~ 544 (678)
++ |+|.+++...........+..++.||+.||+||| +++|+||||||+||+++. ...+||+|||+++....
T Consensus 100 ~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~ 175 (432)
T 3p23_A 100 CA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV 175 (432)
T ss_dssp CS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--
T ss_pred CC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccC
Confidence 96 5999999877655555567789999999999999 899999999999999943 33688999999987643
Q ss_pred CCC-cceeecccCCccccCccccC---CCCCCccchHHHHHHHHHHHHc-CCCCCCcccCCccchhhhhhcccCCccccc
Q 005760 545 EDQ-STIQTQTLATIGYMAPEYGK---EGRVSANGDVYSFGIMLMETFT-RKKPTDEIFNGEMTLKHWVNDWLPISTKEI 619 (678)
Q Consensus 545 ~~~-~~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslGv~l~ell~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (678)
... ........||+.|+|||++. ...++.++||||+||++|||++ |..||........ ...... .....
T Consensus 176 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~--~~~~~~----~~~~~ 249 (432)
T 3p23_A 176 GRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQA--NILLGA----CSLDC 249 (432)
T ss_dssp ----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHH--HHHTTC----CCCTT
T ss_pred CCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHH--HHHhcc----CCccc
Confidence 321 12334567999999999987 4567889999999999999999 8888854222111 000000 00000
Q ss_pred ccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 620 VDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..+ ....+..+.+++.+||+.||++|||+.|+++
T Consensus 250 ~~~------------~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 250 LHP------------EKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp SCT------------TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cCc------------cccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 000 0123455789999999999999999999984
No 240
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=3.8e-37 Score=326.34 Aligned_cols=200 Identities=25% Similarity=0.337 Sum_probs=170.3
Q ss_pred hhcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCC-Cc-----cceeeeeeeecCCe
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-HR-----NIIKVISSCSNEEF 462 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~~~~~~~~~~~ 462 (678)
..++|++.+.||+|+||.||+|... +++.||||++... ......+..|+.+++.++ |+ +++++++++...+.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 3578999999999999999999854 7899999999643 223456777888888875 44 49999999999999
Q ss_pred EEEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec--CCCcEEEEeeccc
Q 005760 463 KALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD--DNMVAHLSDFGIA 539 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~--~~~~~kl~Dfg~~ 539 (678)
.++||||++ ++|.+++.... ..+++..+..++.|++.||.|||. .+.+|+||||||+||+++ .++.+||+|||++
T Consensus 131 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~-~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a 208 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT-PELSIIHCDLKPENILLCNPKRSAIKIVDFGSS 208 (382)
T ss_dssp EEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS-TTTCEECCCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred eEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc-CCCCEEcCCCCcccEEEecCCCCcEEEEeccCc
Confidence 999999996 49999998654 458999999999999999999992 246899999999999994 5788999999999
Q ss_pred cccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcc
Q 005760 540 KLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEI 597 (678)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~ 597 (678)
+..... .....+|+.|+|||++.+..++.++|||||||++|||++|+.||.+.
T Consensus 209 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 209 CQLGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp EETTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 876422 23457899999999999999999999999999999999999999763
No 241
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=4.1e-37 Score=320.03 Aligned_cols=252 Identities=19% Similarity=0.270 Sum_probs=173.0
Q ss_pred hhcCCCCCc-cccCCCceeEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccceeeeeeeec----CCeE
Q 005760 390 ATDGFSENN-LIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNIIKVISSCSN----EEFK 463 (678)
Q Consensus 390 ~~~~~~~~~-~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~----~~~~ 463 (678)
..++|.+.+ .||+|+||.||+|... +++.||+|++.... ....+....++.++||||+++++++.. ....
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 456788854 6999999999999865 79999999986421 222233344667799999999999865 4568
Q ss_pred EEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC---CCcEEEEeeccc
Q 005760 464 ALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD---NMVAHLSDFGIA 539 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~---~~~~kl~Dfg~~ 539 (678)
++||||+++|+|.+++.... ..+++..++.++.|++.||+||| +++|+||||||+||+++. ++.+||+|||++
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~ 178 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFA 178 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccc
Confidence 99999999999999998654 36899999999999999999999 899999999999999976 456999999999
Q ss_pred cccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccccc
Q 005760 540 KLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEI 619 (678)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (678)
...... ......+|+.|+|||++.+..++.++||||+||++|+|++|+.||............. .... ......
T Consensus 179 ~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~-~~~~-~~~~~~ 252 (336)
T 3fhr_A 179 KETTQN----ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMK-RRIR-LGQYGF 252 (336)
T ss_dssp EEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------CC
T ss_pred eecccc----ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHH-Hhhh-cccccc
Confidence 765422 2234568999999999988889999999999999999999999997643322110000 0000 000000
Q ss_pred ccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 620 VDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..+ ....++.++.+++.+||+.||++|||+.|+++
T Consensus 253 ~~~-----------~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 253 PNP-----------EWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp CTT-----------TSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred Cch-----------hhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000 00124566889999999999999999999987
No 242
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=318.72 Aligned_cols=251 Identities=22% Similarity=0.275 Sum_probs=181.9
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccCc--hhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYGR--VFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~--~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 467 (678)
.++|++.+.||+|+||.||+|... +|+.||+|++...... ..+.+.++..+++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 457888999999999999999864 7999999999754322 2233445556788889999999999999999999999
Q ss_pred EecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 468 EYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSA-QVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 468 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
||+ ++.+..+.......+++..+..++.|++.||.||| ++ +|+||||||+||+++.++.+||+|||++.......
T Consensus 104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~ 179 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK 179 (318)
T ss_dssp CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCc
Confidence 999 55666666654556899999999999999999999 75 99999999999999999999999999997654321
Q ss_pred CcceeecccCCccccCccccC-----CCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccccccc
Q 005760 547 QSTIQTQTLATIGYMAPEYGK-----EGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVD 621 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (678)
......+++.|+|||.+. ...++.++||||||+++|||++|+.||..................+
T Consensus 180 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-------- 248 (318)
T 2dyl_A 180 ---AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPP-------- 248 (318)
T ss_dssp ----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCC--------
T ss_pred ---cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCC--------
Confidence 223456899999999984 4568899999999999999999999997532222122221111110
Q ss_pred CccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 622 PNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..... ..++.++.+++.+||+.||.+||++.|+++
T Consensus 249 -~~~~~--------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 249 -LLPGH--------MGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp -CCCSS--------SCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred -CCCcc--------CCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 00000 013456889999999999999999999986
No 243
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=325.43 Aligned_cols=262 Identities=22% Similarity=0.274 Sum_probs=194.2
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC--chhhhHHHHHHHHHhCCCccceeeeeeeecCCe-----
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG--RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEF----- 462 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~----- 462 (678)
.++|.+.+.||+|+||.||+|.. .+|+.||||++..... ...+.+.+|+.+++.++||||+++++++...+.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 46789999999999999999985 4799999999965422 234678899999999999999999999977654
Q ss_pred -EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 463 -KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 463 -~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
.++||||++ ++|.+++.. .+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||++..
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 175 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH 175 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred eEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccccC
Confidence 499999997 588887753 3899999999999999999999 89999999999999999999999999999976
Q ss_pred cCCCCCcceeecccCCccccCccccCC-CCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhc--ccCCccc-
Q 005760 542 LTREDQSTIQTQTLATIGYMAPEYGKE-GRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVND--WLPISTK- 617 (678)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~- 617 (678)
.... .....+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||.+....+ .+...... ..+....
T Consensus 176 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~ 249 (353)
T 3coi_A 176 ADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGTEFVQ 249 (353)
T ss_dssp -------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH-HHHHHHHHHCBCCHHHHT
T ss_pred CCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHHH
Confidence 4321 234568999999998876 678999999999999999999999997533211 01111100 0000000
Q ss_pred ccccC-------ccCCccchhh-HHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 618 EIVDP-------NLLSREDINF-VAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 618 ~~~~~-------~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.+.+. .........+ .....+++++.+++.+||+.||++|||+.|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 250 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp TCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 00000 0000000000 000134567899999999999999999999985
No 244
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.6e-37 Score=332.32 Aligned_cols=302 Identities=22% Similarity=0.284 Sum_probs=249.9
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccc-cCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSG-FIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLI 79 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L 79 (678)
+|+|++|++++..|..|..+++|++|+|++|.+.+ +.+.+|.++++|++|+|++|.+..+.+. .|.++++|++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L 108 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-----AFNGLANLEVL 108 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-----TTTTCTTCCEE
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-----hccCcccCCEE
Confidence 37899999998888889999999999999999873 4567899999999999999998876543 58889999999
Q ss_pred ECccCCCcccCCh-hhhhcccccccEEEcccccccccCCcc-ccCCCCCcEEEccCCccCCcCChhhhcc----------
Q 005760 80 SFSNNPLDGILPK-TSVGNLSHSLEYFEMAYCNVSGGIPEE-IGNLTNLTIIYLGGNKLNGSIPSTLGKL---------- 147 (678)
Q Consensus 80 ~L~~n~i~~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l---------- 147 (678)
+|++|++++..+. ..+..++ +|++|+|++|++++..|.. |.++++|++|++++|++++..+..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 9999998764332 2255565 8999999999999887776 7889999999999999987777766554
Q ss_pred ------------------------CCCCEEEccCCcCCCCCCCccc----------------------------------
Q 005760 148 ------------------------QKLQGLGLENNKLEGSIPDSIC---------------------------------- 169 (678)
Q Consensus 148 ------------------------~~L~~L~L~~n~i~~~~~~~~~---------------------------------- 169 (678)
++|++|+|++|.+++..|..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 5677777777776543322221
Q ss_pred -----CCCCccEEecCCCcCCCCChhhhhccccccceecccccccccc-ccccccccccEEEecCCcccCCCCccccccc
Q 005760 170 -----HSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIP-LTFWNLKDILYLNFSSNFFTGPLPLEIGNLK 243 (678)
Q Consensus 170 -----~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 243 (678)
..++|++|++++|.+.+..|..|..+++|+.|+|++|+++.++ ..|..+++|+.|+|++|.+++..+..|.+++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 1257888888888888888888999999999999999999874 4788999999999999999888888887777
Q ss_pred cccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC-CccccccccccccCccccCCCC
Q 005760 244 IARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPN 318 (678)
Q Consensus 244 ~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~l~~~~~~~n~~~c~~~~ 318 (678)
+|+.|+|++|++++..|..+..+++|++|++++|++++.++.. ..+..++.+++.+|++.|+||.
T Consensus 348 ----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 348 ----------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp ----------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ----------cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999999999888999999999999999999999876654 6788999999999999999984
No 245
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=2.3e-37 Score=327.28 Aligned_cols=265 Identities=17% Similarity=0.244 Sum_probs=197.2
Q ss_pred hcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHHHhCC-----------Cccceeeeeeee
Q 005760 391 TDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-----------HRNIIKVISSCS 458 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~~~~~~~ 458 (678)
.++|++.+.||+|+||.||+|.. .+++.||||++... ....+.+.+|+.+++.++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 46899999999999999999985 57899999998643 223466788999998876 899999999987
Q ss_pred cCC----eEEEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEcCCCCCCeeec------
Q 005760 459 NEE----FKALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSA-QVIHCDLKPSNVLLD------ 526 (678)
Q Consensus 459 ~~~----~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~dl~~~Nill~------ 526 (678)
..+ ..++||||+ +++|.+++.... ..+++..+..++.||+.||+||| ++ +|+||||||+||+++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEETTT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEeccCCCc
Confidence 544 789999999 889999997643 35899999999999999999999 87 999999999999994
Q ss_pred CCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCcc----
Q 005760 527 DNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEM---- 602 (678)
Q Consensus 527 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~---- 602 (678)
..+.+||+|||++...... .....+|+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~ 247 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDD 247 (373)
T ss_dssp TEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHH
T ss_pred CcceEEEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChH
Confidence 4458999999999866432 2345789999999999998999999999999999999999999975432111
Q ss_pred -chhhhhhcccCC------------------c-ccccccCccCCcc---chhhHHHHHHHHHHHHHHhhccccCcCCCCC
Q 005760 603 -TLKHWVNDWLPI------------------S-TKEIVDPNLLSRE---DINFVAKEQCVSFVFNVAMECTVESPEQRIN 659 (678)
Q Consensus 603 -~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps 659 (678)
............ . ...+......... ......+..++.++.+++.+||+.||++|||
T Consensus 248 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 327 (373)
T 1q8y_A 248 DHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRAD 327 (373)
T ss_dssp HHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBC
T ss_pred HHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCC
Confidence 011111000000 0 0000000000000 0000011456788999999999999999999
Q ss_pred HHHHHH
Q 005760 660 AKEIVT 665 (678)
Q Consensus 660 ~~ell~ 665 (678)
+.|+++
T Consensus 328 ~~ell~ 333 (373)
T 1q8y_A 328 AGGLVN 333 (373)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 999986
No 246
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=8e-38 Score=322.26 Aligned_cols=244 Identities=25% Similarity=0.328 Sum_probs=191.2
Q ss_pred HHHhhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeecccC------chhhhHHHHHHHHHhC----CCccceeeee
Q 005760 387 LCRATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYG------RVFKSFDVECEMMKSI----RHRNIIKVIS 455 (678)
Q Consensus 387 ~~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l----~h~niv~~~~ 455 (678)
.....++|++.+.||+|+||.||+|.. .+++.||+|++..... .....+.+|+.+++.+ +||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 344567899999999999999999985 5789999999865422 1234566799999988 8999999999
Q ss_pred eeecCCeEEEEEEe-cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeec-CCCcEEE
Q 005760 456 SCSNEEFKALVLEY-MPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLD-DNMVAHL 533 (678)
Q Consensus 456 ~~~~~~~~~lv~e~-~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~-~~~~~kl 533 (678)
++.+.+..++|+|| +.+++|.+++.... .+++..++.++.|++.||+||| +.+|+||||||+||+++ .++.+||
T Consensus 106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl 181 (312)
T 2iwi_A 106 WFETQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKL 181 (312)
T ss_dssp EC-----CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEE
T ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEE
Confidence 99999999999999 78999999998755 4899999999999999999999 89999999999999999 8999999
Q ss_pred EeeccccccCCCCCcceeecccCCccccCccccCCCCCC-ccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhccc
Q 005760 534 SDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVS-ANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWL 612 (678)
Q Consensus 534 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~ 612 (678)
+|||++....... .....++..|+|||++.+..+. .++||||+|+++|||++|+.||..... ......
T Consensus 182 ~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-------~~~~~~ 250 (312)
T 2iwi_A 182 IDFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE-------ILEAEL 250 (312)
T ss_dssp CCCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-------HHHTCC
T ss_pred EEcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH-------Hhhhcc
Confidence 9999998764322 2345689999999988776664 589999999999999999999864211 100000
Q ss_pred CCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 613 PISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
..+ ..++.++.+++.+||+.||++|||+.|+++
T Consensus 251 -------~~~-------------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 251 -------HFP-------------AHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp -------CCC-------------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred -------CCc-------------ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000 123455889999999999999999999986
No 247
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=1.3e-36 Score=319.21 Aligned_cols=264 Identities=22% Similarity=0.291 Sum_probs=198.2
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CC-cEEEEEEeecccCchhhhHHHHHHHHHhCCCcc------ceeeeeeeecCCe
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DG-MEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRN------IIKVISSCSNEEF 462 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~-~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~~~~~~~~~~~ 462 (678)
.++|++.+.||+|+||.||+|... ++ +.||+|++... ....+.+.+|+.+++.++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 468999999999999999999853 44 78999999643 234567788999999997766 8999999999999
Q ss_pred EEEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeee----------------
Q 005760 463 KALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLL---------------- 525 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill---------------- 525 (678)
.++||||+ ++++.+++.... ..+++..+..++.||+.||+||| +++|+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeccccccccccccccc
Confidence 99999999 667777776543 46899999999999999999999 9999999999999999
Q ss_pred ---cCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCcc
Q 005760 526 ---DDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEM 602 (678)
Q Consensus 526 ---~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~ 602 (678)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||......+.
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~ 247 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREH 247 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred ccccCCCcEEEeecCcccccccc-----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 56889999999999764322 2345789999999999999999999999999999999999999975332110
Q ss_pred chhhhhhcc--cCCcc-------cccccCcc-CCcc-c-------------hhhHHHHHHHHHHHHHHhhccccCcCCCC
Q 005760 603 TLKHWVNDW--LPIST-------KEIVDPNL-LSRE-D-------------INFVAKEQCVSFVFNVAMECTVESPEQRI 658 (678)
Q Consensus 603 ~~~~~~~~~--~~~~~-------~~~~~~~~-~~~~-~-------------~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp 658 (678)
........ .+... ........ .... . .........+.++.+++.+||+.||++||
T Consensus 248 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 326 (355)
T 2eu9_A 248 -LVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRI 326 (355)
T ss_dssp -HHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred -HHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCc
Confidence 11000000 00000 00000000 0000 0 00000113356799999999999999999
Q ss_pred CHHHHHH
Q 005760 659 NAKEIVT 665 (678)
Q Consensus 659 s~~ell~ 665 (678)
|+.|+++
T Consensus 327 t~~e~l~ 333 (355)
T 2eu9_A 327 TLAEALL 333 (355)
T ss_dssp CHHHHTT
T ss_pred CHHHHhc
Confidence 9999984
No 248
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=330.25 Aligned_cols=302 Identities=21% Similarity=0.218 Sum_probs=275.9
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
+|+|++|.+++..|..|.++++|++|+|++|+++.+.+..|.++++|++|+|++|.+..+... .|.++++|+.|+
T Consensus 60 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-----~~~~l~~L~~L~ 134 (477)
T 2id5_A 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-----MFQDLYNLKSLE 134 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-----TTTTCTTCCEEE
T ss_pred EEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-----HccccccCCEEE
Confidence 378999999988899999999999999999999988888899999999999999999877643 589999999999
Q ss_pred CccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcC
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKL 160 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i 160 (678)
|++|.+.++.+.. +..++ +|++|+|++|++++..+..|.++++|+.|+|++|.+.+..+..|..+++|++|++++|.+
T Consensus 135 l~~n~l~~~~~~~-~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 135 VGDNDLVYISHRA-FSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp ECCTTCCEECTTS-STTCT-TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred CCCCccceeChhh-ccCCC-CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 9999999887765 67776 899999999999988888899999999999999999988888999999999999999998
Q ss_pred CCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccCCCCccc
Q 005760 161 EGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEI 239 (678)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~ 239 (678)
.+.+|.......+|+.|++++|.++...+..|..+++|+.|+|++|.|+.++. .|..+++|+.|+|++|++++..|..|
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 87788777777899999999999997777889999999999999999998876 68999999999999999999889888
Q ss_pred cccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccccccccccCccccCCCCC
Q 005760 240 GNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNL 319 (678)
Q Consensus 240 ~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~ 319 (678)
.+++ +|+.|+|++|+|++..+..|..+++|+.|++++|+|.|+|+..+.+.+.....+.++.+.|.+|..
T Consensus 293 ~~l~----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 293 RGLN----------YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp TTCT----------TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGG
T ss_pred cCcc----------cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchH
Confidence 8777 999999999999998888999999999999999999999988776666677788889999988753
No 249
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1.7e-36 Score=334.86 Aligned_cols=264 Identities=23% Similarity=0.314 Sum_probs=195.5
Q ss_pred hhcCCCCCccccCCCceeEEEEEe-CCCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeec------CC
Q 005760 390 ATDGFSENNLIGRGSFGSVFKARL-GDGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSN------EE 461 (678)
Q Consensus 390 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~------~~ 461 (678)
..++|++.+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++.. .+
T Consensus 12 ~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 12 TCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp -----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 347899999999999999999985 478999999986542 2345678899999999999999999998755 67
Q ss_pred eEEEEEEecCCCCHHHHhhhCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCc---EEEEee
Q 005760 462 FKALVLEYMPHGSLEKYLHSSNY--ILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMV---AHLSDF 536 (678)
Q Consensus 462 ~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~---~kl~Df 536 (678)
..++||||+++|+|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+||
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DF 168 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDL 168 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSC
T ss_pred eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEccc
Confidence 78999999999999999986542 5788899999999999999999 899999999999999997665 999999
Q ss_pred ccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCc-
Q 005760 537 GIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPIS- 615 (678)
Q Consensus 537 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~- 615 (678)
|++....... ......+|+.|+|||.+.+..++.++||||+||++|||++|..||...... ..|........
T Consensus 169 G~a~~~~~~~---~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~----~~~~~~i~~~~~ 241 (676)
T 3qa8_A 169 GYAKELDQGE---LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP----VQWHGKVREKSN 241 (676)
T ss_dssp CCCCBTTSCC---CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH----HHSSTTCC----
T ss_pred cccccccccc---ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch----hhhhhhhhcccc
Confidence 9998764322 234567999999999999999999999999999999999999998652111 11111000000
Q ss_pred ----ccccccCcc-C-CccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHH
Q 005760 616 ----TKEIVDPNL-L-SREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEI 663 (678)
Q Consensus 616 ----~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~el 663 (678)
......... . .............+.++.+++.+||.+||++|||+.|+
T Consensus 242 ~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el 295 (676)
T 3qa8_A 242 EHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN 295 (676)
T ss_dssp --CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred hhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence 000000000 0 00000000012356779999999999999999999884
No 250
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=4.9e-36 Score=304.09 Aligned_cols=233 Identities=15% Similarity=0.050 Sum_probs=185.2
Q ss_pred hcCCCCCccccCCCceeEEEEEeC-CCcEEEEEEeecccC---chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG---RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
.++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|+..++.++||||+++++++.+.+..|+|
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 109 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV 109 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence 367999999999999999999864 689999999975432 2346788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++++|.++++.. .....+..++.|++.||+||| +++|+||||||+||+++.+|.+||+++|.
T Consensus 110 ~e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~~-------- 175 (286)
T 3uqc_A 110 AEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPAT-------- 175 (286)
T ss_dssp EECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCCC--------
T ss_pred EEecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEeccc--------
Confidence 9999999999999653 355678889999999999999 99999999999999999999999974432
Q ss_pred CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLS 626 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (678)
++ .++.++|||||||++|||++|+.||.+........ .... .......
T Consensus 176 --------------~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~-~~~~---------~~~~~~~- 223 (286)
T 3uqc_A 176 --------------MP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA-PAER---------DTAGQPI- 223 (286)
T ss_dssp --------------CT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE-ECCB---------CTTSCBC-
T ss_pred --------------cC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH-HHHH---------HhccCCC-
Confidence 22 26789999999999999999999997643322100 0000 0000000
Q ss_pred ccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHHHHHHHHHH
Q 005760 627 REDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVTKLLKIRDS 673 (678)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~~L~~~~~~ 673 (678)
........+++++.+++.+||+.||++| |+.|+++.|+++...
T Consensus 224 ---~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~ 266 (286)
T 3uqc_A 224 ---EPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAV 266 (286)
T ss_dssp ---CHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-
T ss_pred ---ChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhcc
Confidence 0000112356678999999999999999 999999999998643
No 251
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-35 Score=341.50 Aligned_cols=231 Identities=33% Similarity=0.570 Sum_probs=140.3
Q ss_pred ccccCCcCcccCCcc-ccCCCCCCEEecCCCcccccCCccccCCC-CCCEEEccCccCCCCccchhhcccccC--CCCCc
Q 005760 2 LQMWENNFSGTIPRF-IFNASKLSILELSDNSFSGFIPNTFGNLR-NLQALRLSNNYLTSSTLELSFLSSLSN--CKSLT 77 (678)
Q Consensus 2 L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~~--l~~L~ 77 (678)
|+|++|++++.+|.. +..+++|++|+|++|++++..|..+.+++ +|++|++++|.+...... .+.. +++|+
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-----~~~~~~~~~L~ 397 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-----NLCQNPKNTLQ 397 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-----TTTCSTTCCCC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-----hhhhcccCCcc
Confidence 678888887777755 77788888888888888877777777776 777777777776532211 1222 45556
Q ss_pred EEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccC
Q 005760 78 LISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLEN 157 (678)
Q Consensus 78 ~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (678)
+|++++|++++..|.. +..++ +|++|+|++|++++..|..|..+++|+.|++++|++++..|..+..+++|++|+|++
T Consensus 398 ~L~L~~n~l~~~~p~~-l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPT-LSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp EEECCSSEEEEECCGG-GGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred EEECCCCccccccCHH-HhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 6666666555555543 44444 555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccc-cccccccccccccEEEecCCcccCCCC
Q 005760 158 NKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELT-SIPLTFWNLKDILYLNFSSNFFTGPLP 236 (678)
Q Consensus 158 n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~~~~ 236 (678)
|++++.+|..+..+++|++|++++|++++.+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++.+.+|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 5555555555555555555555555555555555555555555555555555 345555555555555555555555555
Q ss_pred ccc
Q 005760 237 LEI 239 (678)
Q Consensus 237 ~~~ 239 (678)
..+
T Consensus 556 ~~~ 558 (768)
T 3rgz_A 556 AAM 558 (768)
T ss_dssp GGG
T ss_pred hHH
Confidence 443
No 252
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.8e-36 Score=340.48 Aligned_cols=242 Identities=20% Similarity=0.294 Sum_probs=196.0
Q ss_pred hcCCCCCccccCCCceeEEEEEeC--CCcEEEEEEeeccc-CchhhhHHHHHHHHHhCCCccceeeeeeeecCCe-----
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLG--DGMEVAMKVFNLQY-GRVFKSFDVECEMMKSIRHRNIIKVISSCSNEEF----- 462 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~----- 462 (678)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ......+.+|+++++.++||||+++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 478999999999999999999864 68999999986432 2345678899999999999999999999977655
Q ss_pred EEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeecccccc
Q 005760 463 KALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 463 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
.|+||||+++++|.+++.. .+++..+..++.||+.||.||| +++|+||||||+||+++.+ .+||+|||+++..
T Consensus 159 ~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~ 231 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRI 231 (681)
T ss_dssp EEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEET
T ss_pred eEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchhc
Confidence 7999999999999988765 4899999999999999999999 8999999999999999985 9999999999865
Q ss_pred CCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccC
Q 005760 543 TREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDP 622 (678)
Q Consensus 543 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (678)
... ....||+.|+|||++.++ ++.++|||||||++|+|++|..||........ +
T Consensus 232 ~~~------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~-------------------~ 285 (681)
T 2pzi_A 232 NSF------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDGL-------------------P 285 (681)
T ss_dssp TCC------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSSC-------------------C
T ss_pred ccC------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccccc-------------------c
Confidence 432 345699999999988765 48899999999999999999888754221100 0
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCC-CHHHHHHHHHHHHHH
Q 005760 623 NLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRI-NAKEIVTKLLKIRDS 673 (678)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-s~~ell~~L~~~~~~ 673 (678)
. .......++.+.+++.+||++||++|| +++++.+.|..+...
T Consensus 286 ---~-----~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~ 329 (681)
T 2pzi_A 286 ---E-----DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLRE 329 (681)
T ss_dssp ---T-----TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHHH
T ss_pred ---c-----cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHHH
Confidence 0 001123456688999999999999999 577788888777543
No 253
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=2.6e-35 Score=301.42 Aligned_cols=230 Identities=20% Similarity=0.305 Sum_probs=179.7
Q ss_pred hcCCCCC-ccccCCCceeEEEEEe-CCCcEEEEEEeecccCchhhhHHHHHHHH-HhCCCccceeeeeeeec----CCeE
Q 005760 391 TDGFSEN-NLIGRGSFGSVFKARL-GDGMEVAMKVFNLQYGRVFKSFDVECEMM-KSIRHRNIIKVISSCSN----EEFK 463 (678)
Q Consensus 391 ~~~~~~~-~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~~~~~~~~----~~~~ 463 (678)
.++|.+. +.||+|+||.||+|.. .+++.||+|++.. ...+.+|+.++ +..+||||+++++++.. ....
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 3567776 7899999999999985 5789999999863 24567888887 56689999999999876 6788
Q ss_pred EEEEEecCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecC---CCcEEEEeeccc
Q 005760 464 ALVLEYMPHGSLEKYLHSSN-YILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDD---NMVAHLSDFGIA 539 (678)
Q Consensus 464 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~---~~~~kl~Dfg~~ 539 (678)
++||||+++++|.+++.... ..+++..+..++.|++.||+||| +++|+||||||+||+++. ++.+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a 167 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 167 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence 99999999999999998754 35899999999999999999999 999999999999999997 889999999998
Q ss_pred cccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCccchhhhhhcccCCccccc
Q 005760 540 KLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEI 619 (678)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (678)
.... +..++.++||||+||++|||++|+.||........... ....
T Consensus 168 ~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~----------~~~~ 213 (299)
T 3m2w_A 168 KETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG----------MKTR 213 (299)
T ss_dssp EECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CC----------SCCS
T ss_pred cccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHH----------HHHH
Confidence 6432 13467789999999999999999999965332211000 0000
Q ss_pred ccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHHHH
Q 005760 620 VDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEIVT 665 (678)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~ell~ 665 (678)
.. .............+++++.+++.+||+.||++|||+.|+++
T Consensus 214 ~~---~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 214 IR---MGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp SC---TTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred Hh---hccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 00 00000111112345677999999999999999999999986
No 254
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.8e-35 Score=328.79 Aligned_cols=300 Identities=22% Similarity=0.209 Sum_probs=273.4
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
|++++|++++..+..|..+++|++|+|++|+++ .+|..|.++++|++|++++|.+..++.. .+.++++|++|++
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l 332 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI-----SASNFPSLTHLSI 332 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG-----CGGGCTTCSEEEC
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh-----hhhccCcCCEEEC
Confidence 689999999888888999999999999999999 6788999999999999999999977543 5889999999999
Q ss_pred ccCCCcccCChhhhhcccccccEEEcccccccccC--CccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCc
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGI--PEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNK 159 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~ 159 (678)
++|.+.+..+...+..++ +|++|++++|.+.+.. +..+.++++|++|++++|++.+..|..|..+++|++|++++|.
T Consensus 333 ~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCcccccchhhhhccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 999998777766677777 8999999999999876 7889999999999999999998889999999999999999999
Q ss_pred CCCCCCC-cccCCCCccEEecCCCcCCCCChhhhhccccccceecccccccc--cc--ccccccccccEEEecCCcccCC
Q 005760 160 LEGSIPD-SICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTS--IP--LTFWNLKDILYLNFSSNFFTGP 234 (678)
Q Consensus 160 i~~~~~~-~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~--l~--~~~~~l~~L~~L~l~~N~l~~~ 234 (678)
+++..+. .+..+++|++|++++|.+.+..|..+..+++|++|+|++|+++. ++ ..+..+++|+.|++++|++++.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 9876554 48999999999999999999999999999999999999999986 23 4689999999999999999998
Q ss_pred CCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC-CccccccccccccCccc
Q 005760 235 LPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELL 313 (678)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~l~~~~~~~n~~~ 313 (678)
.|..|.+++ +|+.|+|++|++++..|..+..++.| .|++++|++++.+|.. ..+..++.+++.+||+.
T Consensus 492 ~~~~~~~l~----------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 492 DQHAFTSLK----------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CTTTTTTCT----------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred Chhhhcccc----------CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 898888877 99999999999999999999999999 9999999999887764 66788999999999999
Q ss_pred cCCCCC
Q 005760 314 CGSPNL 319 (678)
Q Consensus 314 c~~~~~ 319 (678)
|+|+..
T Consensus 561 c~c~~~ 566 (606)
T 3t6q_A 561 CTCSNI 566 (606)
T ss_dssp CSGGGH
T ss_pred ccCCcH
Confidence 999843
No 255
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-35 Score=317.89 Aligned_cols=283 Identities=23% Similarity=0.280 Sum_probs=248.8
Q ss_pred CccccCCcCcccC-CccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEE
Q 005760 1 MLQMWENNFSGTI-PRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLI 79 (678)
Q Consensus 1 ~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L 79 (678)
+|+|++|.+.+.+ |..|..+++|++|+|++|++++..|++|.++++|++|+|++|.++..... ...|..+++|++|
T Consensus 58 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~l~~L~~L 134 (455)
T 3v47_A 58 FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS---GNFFKPLTSLEML 134 (455)
T ss_dssp EEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH---SSTTTTCTTCCEE
T ss_pred EEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC---cccccCcccCCEE
Confidence 4789999997655 57788999999999999999988899999999999999999999763221 1237889999999
Q ss_pred ECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCC----------------------------------CC
Q 005760 80 SFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNL----------------------------------TN 125 (678)
Q Consensus 80 ~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l----------------------------------~~ 125 (678)
+|++|++++..|...+..++ +|++|++++|++++..+..+..+ ++
T Consensus 135 ~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 213 (455)
T 3v47_A 135 VLRDNNIKKIQPASFFLNMR-RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213 (455)
T ss_dssp ECCSSBCCSCCCCGGGGGCT-TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred ECCCCccCccCcccccCCCC-cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence 99999999888877677777 89999999999998888766554 67
Q ss_pred CcEEEccCCccCCcCChhhhcc---------------------------------------CCCCEEEccCCcCCCCCCC
Q 005760 126 LTIIYLGGNKLNGSIPSTLGKL---------------------------------------QKLQGLGLENNKLEGSIPD 166 (678)
Q Consensus 126 L~~L~l~~N~l~~~~~~~~~~l---------------------------------------~~L~~L~L~~n~i~~~~~~ 166 (678)
|++|++++|++++..|..+..+ ++|++|++++|.+++.+|.
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence 9999999998876555544322 6899999999999988899
Q ss_pred cccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccc-cccccccccccEEEecCCcccCCCCccccccccc
Q 005760 167 SICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSI-PLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIA 245 (678)
Q Consensus 167 ~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~ 245 (678)
.+..+++|++|++++|.+++..|..|..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++++..|..|.+++
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-- 371 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP-- 371 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT--
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc--
Confidence 999999999999999999998899999999999999999999988 45789999999999999999988888888777
Q ss_pred cccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCC
Q 005760 246 RIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGG 297 (678)
Q Consensus 246 ~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 297 (678)
+|++|+|++|+|++..+..+..+++|+.|++++|+|+|++|...
T Consensus 372 --------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 372 --------NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp --------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred --------cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 99999999999998888888999999999999999999999753
No 256
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-34 Score=325.50 Aligned_cols=190 Identities=20% Similarity=0.205 Sum_probs=140.6
Q ss_pred ccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCC-CcccCCCCccEEecCCCcCCCCChhhhhccccc
Q 005760 120 IGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIP-DSICHSDELYKLELGGNKLSGSIPECFNNLASL 198 (678)
Q Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L 198 (678)
+..+++|++|++++|.++ ..|..|..+++|++|++++|.+++..| ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 372 ~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp HHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 333444444444444443 233455556666666666666665544 466677777777777777776677777777777
Q ss_pred cceecccccccc--ccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcc
Q 005760 199 RILLLGSNELTS--IPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKL 276 (678)
Q Consensus 199 ~~L~l~~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 276 (678)
++|+|++|.++. +|..+..+++|+.|++++|.+++..|..|.+++ +|+.|+|++|++++..|..+..+
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH----------RLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----------TCCEEECCSSCCSCEEGGGTTTC
T ss_pred CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc----------cCCEEECCCCcCCCcCHHHccCC
Confidence 777777777775 466777788888888888888777777776666 99999999999999999999999
Q ss_pred cCCCceecccccccccCCCCCccc-cccccccccCccccCCCCCC
Q 005760 277 SYLKDLNLSFNKLEGEIPRGGSFG-NFSAESFEGNELLCGSPNLR 320 (678)
Q Consensus 277 ~~L~~L~l~~N~~~~~~~~~~~~~-~l~~~~~~~n~~~c~~~~~~ 320 (678)
++|+.|++++|+++..++....++ +++.+++.+||+.|+|+..|
T Consensus 521 ~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp TTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred CcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 999999999999997666655665 59999999999999998644
No 257
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=4.9e-36 Score=320.52 Aligned_cols=241 Identities=15% Similarity=0.148 Sum_probs=180.2
Q ss_pred hcCCCCCccccCCCceeEEEEE-eCCCcEEEEEEeecccC---chhhhHHHHHHHHHhCCC-ccceeee-----------
Q 005760 391 TDGFSENNLIGRGSFGSVFKAR-LGDGMEVAMKVFNLQYG---RVFKSFDVECEMMKSIRH-RNIIKVI----------- 454 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~-~~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h-~niv~~~----------- 454 (678)
...|...+.||+|+||.||+|. ..+|+.||||++..... ...+.+.+|+.+++.++| +|...+.
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 3457778899999999999998 45799999999874322 235778899999999977 3221111
Q ss_pred ----------eeeec-----CCeEEEEEEecCCCCHHHHhh------hCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 005760 455 ----------SSCSN-----EEFKALVLEYMPHGSLEKYLH------SSNYILDIYQRLNIMIDVASALEYLHFGYSAQV 513 (678)
Q Consensus 455 ----------~~~~~-----~~~~~lv~e~~~~~~L~~~l~------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~i 513 (678)
.++.. ....+++|+++ +++|.+++. .....+++..+..++.|++.||+||| +++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCc
Confidence 11111 22456777765 679999884 22335678889999999999999999 9999
Q ss_pred EEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcceeecccCCccccCcccc----------CCCCCCccchHHHHHHH
Q 005760 514 IHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYG----------KEGRVSANGDVYSFGIM 583 (678)
Q Consensus 514 vH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~----------~~~~~~~~~DvwslGv~ 583 (678)
+||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++|||||||+
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvi 306 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHH
Confidence 99999999999999999999999998765322 344567 999999998 55668899999999999
Q ss_pred HHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHHHHHHhhccccCcCCCCCHHHH
Q 005760 584 LMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFVFNVAMECTVESPEQRINAKEI 663 (678)
Q Consensus 584 l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rps~~el 663 (678)
+|||++|+.||......+... .+... . ..+++++.+++.+||+.||++||++.|+
T Consensus 307 l~elltg~~Pf~~~~~~~~~~-------------~~~~~----~--------~~~~~~~~~li~~~l~~dP~~Rpt~~~~ 361 (413)
T 3dzo_A 307 IYWIWCADLPNTDDAALGGSE-------------WIFRS----C--------KNIPQPVRALLEGFLRYPKEDRLLPLQA 361 (413)
T ss_dssp HHHHHHSSCCCCTTGGGSCSG-------------GGGSS----C--------CCCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHHCCCCCCCcchhhhHH-------------HHHhh----c--------ccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 999999999997533221100 00000 0 0123568899999999999999999888
Q ss_pred HHH
Q 005760 664 VTK 666 (678)
Q Consensus 664 l~~ 666 (678)
++.
T Consensus 362 l~~ 364 (413)
T 3dzo_A 362 MET 364 (413)
T ss_dssp TTS
T ss_pred HhC
Confidence 653
No 258
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=338.66 Aligned_cols=314 Identities=23% Similarity=0.206 Sum_probs=204.2
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCcc--ccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEE
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNT--FGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLI 79 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L 79 (678)
|+|++|++.+..|+.|.++++|++|+|++|.+++..+.. |.++++|++|+|++|.+...... ..|.++++|++|
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~----~~~~~L~~L~~L 153 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH----PSFGKLNSLKSI 153 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC----GGGGTCSSCCEE
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc----hhHhhCCCCCEE
Confidence 566666666666666666666666666666666544433 66666666666666666554321 246667777777
Q ss_pred ECccCCCcccCChhhhhcc-------------------------------------------------------------
Q 005760 80 SFSNNPLDGILPKTSVGNL------------------------------------------------------------- 98 (678)
Q Consensus 80 ~L~~n~i~~~~~~~~~~~l------------------------------------------------------------- 98 (678)
+|++|.+++..+.. +..+
T Consensus 154 ~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 154 DFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp EEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred ECCCCcCCeeCHHH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 77777665443322 1100
Q ss_pred --------------------------------cccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhc
Q 005760 99 --------------------------------SHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGK 146 (678)
Q Consensus 99 --------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (678)
..+|++|++++|.+.+..+..|..+++|+.|+|++|++++..+..|.+
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC
Confidence 124666777777777777777888888888888888888777888888
Q ss_pred cCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc-------------
Q 005760 147 LQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL------------- 213 (678)
Q Consensus 147 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~------------- 213 (678)
+++|++|+|++|.+++..|..|..+++|+.|++++|.+....+..|..+++|+.|+|++|.++.++.
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK 392 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCC
T ss_pred CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCC
Confidence 8888888888888887778888888888888888888887777778888888888888887765431
Q ss_pred ----------------------------cccccccccEEEecCCcccCCCCcc----cccccccc---------------
Q 005760 214 ----------------------------TFWNLKDILYLNFSSNFFTGPLPLE----IGNLKIAR--------------- 246 (678)
Q Consensus 214 ----------------------------~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~~~--------------- 246 (678)
.+..+++|+.|+|++|++++..+.. ...++..+
T Consensus 393 l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 1225667777777777776433221 01110000
Q ss_pred -ccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC--------------------Ccccccccc
Q 005760 247 -IDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG--------------------GSFGNFSAE 305 (678)
Q Consensus 247 -~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~--------------------~~~~~l~~~ 305 (678)
..+.++++|+.|+|++|+|++..|..+..+++|+.|+|++|.+++.++.. ..+..+..+
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l 552 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVL 552 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEE
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEE
Confidence 01223455555555555555555555555555555555555555433321 124578889
Q ss_pred ccccCccccCCCCCC
Q 005760 306 SFEGNELLCGSPNLR 320 (678)
Q Consensus 306 ~~~~n~~~c~~~~~~ 320 (678)
++.+|||.|+|+..+
T Consensus 553 ~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 553 DITHNKFICECELST 567 (844)
T ss_dssp EEEEECCCCSSSCCS
T ss_pred EecCCCcccccccHH
Confidence 999999999998654
No 259
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=317.50 Aligned_cols=303 Identities=22% Similarity=0.264 Sum_probs=190.3
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
|+|++|++++..|..|..+++|++|+|++|+|++..|++|.++++|++|+|++|+++.++. . .+++|++|+|
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-------~-~l~~L~~L~L 97 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-------H-PTVNLKHLDL 97 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-------C-CCCCCSEEEC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-------c-ccCCccEEec
Confidence 6777777776666677777777777777777777667777777777777777777765442 1 5666666666
Q ss_pred ccCCCccc-CChhhhhcccccccEEEcccccccccCCccccCCCCC--cEEEccCCcc--CCcCChhhhccC--------
Q 005760 82 SNNPLDGI-LPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNL--TIIYLGGNKL--NGSIPSTLGKLQ-------- 148 (678)
Q Consensus 82 ~~n~i~~~-~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~N~l--~~~~~~~~~~l~-------- 148 (678)
++|++++. .|.. +..++ +|++|++++|++.+ ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~-~~~l~-~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 98 SFNAFDALPICKE-FGNMS-QLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CSSCCSSCCCCGG-GGGCT-TCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred cCCccccccchhh-hccCC-cceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 66666553 2222 45554 55555555555543 123333333 4444444333 222232222211
Q ss_pred ---------------------------------------------------------------------------CCCEE
Q 005760 149 ---------------------------------------------------------------------------KLQGL 153 (678)
Q Consensus 149 ---------------------------------------------------------------------------~L~~L 153 (678)
+|++|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 34444
Q ss_pred EccCCcCCCCCCCcc-----------------------------------------------------cCCCCccEEecC
Q 005760 154 GLENNKLEGSIPDSI-----------------------------------------------------CHSDELYKLELG 180 (678)
Q Consensus 154 ~L~~n~i~~~~~~~~-----------------------------------------------------~~l~~L~~L~l~ 180 (678)
++++|.+++.+|..+ ..+++|++|+++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 444444443333332 455667777777
Q ss_pred CCcCCCCChhhhhccccccceeccccccccc---cccccccccccEEEecCCcccCCCCcc-ccc---ccccccccc---
Q 005760 181 GNKLSGSIPECFNNLASLRILLLGSNELTSI---PLTFWNLKDILYLNFSSNFFTGPLPLE-IGN---LKIARIDSC--- 250 (678)
Q Consensus 181 ~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l---~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~---l~~~~~~~~--- 250 (678)
+|.+++..|..+..+++|+.|+|++|+++.+ |..+..+++|+.|++++|.+++.+|.. +.. ++..++..+
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 7777766666666777777777777776643 345666777777777777776534322 322 111111111
Q ss_pred -----Cc-ccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCC-CCccccccccccccCccccCCCC
Q 005760 251 -----DL-ISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPR-GGSFGNFSAESFEGNELLCGSPN 318 (678)
Q Consensus 251 -----~~-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~l~~~~~~~n~~~c~~~~ 318 (678)
.+ ++|+.|+|++|+|+ .+|..+..+++|+.|++++|+++..++. ...+..++.+++.+|++.|+|+.
T Consensus 413 ~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 413 DTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 12 58999999999999 5666667999999999999999976655 56788899999999999999874
No 260
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.9e-34 Score=317.19 Aligned_cols=305 Identities=21% Similarity=0.198 Sum_probs=199.4
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
|+|++|++.+..|..|..+++|++|+|++|+|+++.|++|.++++|++|+|++|.++.++. . .+++|++|+|
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-------~-~l~~L~~L~L 128 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-------C-PMASLRHLDL 128 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS-------C-CCTTCSEEEC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc-------c-ccccCCEEEC
Confidence 6777777776666777777888888888888877777777777888888888877775542 1 5677777777
Q ss_pred ccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCC--cEEEccCCcc--CCcCChhhhccC---------
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNL--TIIYLGGNKL--NGSIPSTLGKLQ--------- 148 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~N~l--~~~~~~~~~~l~--------- 148 (678)
++|+++++.....+..++ +|++|++++|++++. .+..+++| ++|++++|.+ ++..|..|..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCCccccCchHhhcccC-cccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 777776543222355565 677777776666542 23333333 5555555554 333333333221
Q ss_pred ------------------------------------------------------------------------CCCEEEcc
Q 005760 149 ------------------------------------------------------------------------KLQGLGLE 156 (678)
Q Consensus 149 ------------------------------------------------------------------------~L~~L~L~ 156 (678)
+|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 45555555
Q ss_pred CCcCCCCCCCcc-----------------------------------------------------cCCCCccEEecCCCc
Q 005760 157 NNKLEGSIPDSI-----------------------------------------------------CHSDELYKLELGGNK 183 (678)
Q Consensus 157 ~n~i~~~~~~~~-----------------------------------------------------~~l~~L~~L~l~~N~ 183 (678)
+|.+++.+|..+ ..+++|++|++++|.
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 555554444433 455667777777777
Q ss_pred CCCCChhhhhccccccceecccccccccc---ccccccccccEEEecCCcccCCCCc-cccccc---ccc--------cc
Q 005760 184 LSGSIPECFNNLASLRILLLGSNELTSIP---LTFWNLKDILYLNFSSNFFTGPLPL-EIGNLK---IAR--------ID 248 (678)
Q Consensus 184 i~~~~~~~~~~l~~L~~L~l~~N~l~~l~---~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~---~~~--------~~ 248 (678)
+++..|..+..+++|+.|+|++|+++.++ ..+..+++|+.|++++|.+++.+|. .+..++ ... ..
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 77666666777777777777777776543 3466677777777777777653332 232221 111 11
Q ss_pred ccCc-ccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCC-CCccccccccccccCccccCCCCC
Q 005760 249 SCDL-ISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPR-GGSFGNFSAESFEGNELLCGSPNL 319 (678)
Q Consensus 249 ~~~~-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~l~~~~~~~n~~~c~~~~~ 319 (678)
+..+ ++|+.|+|++|+|+. +|..+..+++|+.|++++|+++..++. ...++.++.+++.+|||.|+|+..
T Consensus 445 ~~~l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 445 FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp GSSCCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred hhhhcCcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 1223 589999999999994 555555999999999999999976665 577889999999999999999843
No 261
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-33 Score=322.14 Aligned_cols=308 Identities=21% Similarity=0.221 Sum_probs=194.8
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhc----ccccCCCCCc
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFL----SSLSNCKSLT 77 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~----~~~~~l~~L~ 77 (678)
|+|++|++++..|..+..+++|++|+|++|++++..+.+|.++++|+.|++++|..........++ ..|..+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 456666666555556666666666666666666555555554444444444433222100000000 0344455555
Q ss_pred EEECccCCCcccCChhhhhccc---------------------------ccccEEEcccccccccCCccccCCCCCcEEE
Q 005760 78 LISFSNNPLDGILPKTSVGNLS---------------------------HSLEYFEMAYCNVSGGIPEEIGNLTNLTIIY 130 (678)
Q Consensus 78 ~L~L~~n~i~~~~~~~~~~~l~---------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (678)
+|++++|.+.++.+.. +..++ .+|+.|++++|++++..|..|.++++|+.|+
T Consensus 333 ~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp EEECCSCCBCCCCTTT-TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCCccCCCChhH-hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 5555555554443322 11111 2455555666666666666677777777777
Q ss_pred ccCCccCCcCC-hhhhccCCCCEEEccCCcCCC--------------------------CCCCcccCCCCccEEecCCCc
Q 005760 131 LGGNKLNGSIP-STLGKLQKLQGLGLENNKLEG--------------------------SIPDSICHSDELYKLELGGNK 183 (678)
Q Consensus 131 l~~N~l~~~~~-~~~~~l~~L~~L~L~~n~i~~--------------------------~~~~~~~~l~~L~~L~l~~N~ 183 (678)
|++|.+.+..| ..|.++++|++|++++|++++ ..|..|..+++|+.|++++|.
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 77777654333 456666666666666666543 345566666777777777777
Q ss_pred CCCCChhhhhccccccceeccccccccccc---------cccccccccEEEecCCcccCCCCccccccccccccccCccc
Q 005760 184 LSGSIPECFNNLASLRILLLGSNELTSIPL---------TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLIS 254 (678)
Q Consensus 184 i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~---------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~ 254 (678)
+++..+..|.++++|+.|+|++|+++.++. .+.++++|+.|+|++|+++...+..|.+++ +
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~----------~ 561 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF----------E 561 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------T
T ss_pred CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc----------C
Confidence 776666667777777777777777765532 256667777777777777754445566555 9
Q ss_pred ccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC-C-ccccccccccccCccccCCCC-CC
Q 005760 255 LISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG-G-SFGNFSAESFEGNELLCGSPN-LR 320 (678)
Q Consensus 255 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~-~-~~~~l~~~~~~~n~~~c~~~~-~~ 320 (678)
|+.|+|++|+++++.+..|..+++|+.|++++|.+++..+.. . .+..+..+++.+|||.|+|+. .|
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~ 630 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSS
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHH
Confidence 999999999999888888899999999999999999876654 2 578899999999999999985 44
No 262
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=3.5e-35 Score=305.79 Aligned_cols=243 Identities=17% Similarity=0.184 Sum_probs=182.9
Q ss_pred hcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccC--------chhhhHHHHHHHHHhCC---------Ccc----
Q 005760 391 TDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYG--------RVFKSFDVECEMMKSIR---------HRN---- 449 (678)
Q Consensus 391 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~---------h~n---- 449 (678)
.++|++.+.||+|+||.||+|+. +|+.||||++..... ...+.+.+|+.+++.++ |||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46788999999999999999988 789999999976532 23367889999999886 544
Q ss_pred -------------ceeeeeeeec-------------CCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHH
Q 005760 450 -------------IIKVISSCSN-------------EEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALE 503 (678)
Q Consensus 450 -------------iv~~~~~~~~-------------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ 503 (678)
|+++++++.+ .+..++||||+++|++.+.+.+ ..+++..+..++.||+.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~ 175 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLA 175 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence 4555554443 6789999999999977776654 34899999999999999999
Q ss_pred HHhcCCCCCeEEcCCCCCCeeecCCC--------------------cEEEEeeccccccCCCCCcceeecccCCccccCc
Q 005760 504 YLHFGYSAQVIHCDLKPSNVLLDDNM--------------------VAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAP 563 (678)
Q Consensus 504 ~LH~~~~~~ivH~dl~~~Nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP 563 (678)
|||+ +++|+||||||+|||++.++ .+||+|||+|+.... ....||+.|+||
T Consensus 176 ~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~-------~~~~gt~~y~aP 246 (336)
T 2vuw_A 176 VAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD-------GIVVFCDVSMDE 246 (336)
T ss_dssp HHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET-------TEEECCCCTTCS
T ss_pred HHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC-------CcEEEeecccCh
Confidence 9993 47899999999999999887 999999999986532 124689999999
Q ss_pred cccCCCCCCccchHHHHHHH-HHHHHcCCCCCCcccCCccchhhhhhcccCCcccccccCccCCccchhhHHHHHHHHHH
Q 005760 564 EYGKEGRVSANGDVYSFGIM-LMETFTRKKPTDEIFNGEMTLKHWVNDWLPISTKEIVDPNLLSREDINFVAKEQCVSFV 642 (678)
Q Consensus 564 E~~~~~~~~~~~DvwslGv~-l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 642 (678)
|++.+.. +.++||||+|++ .+++++|..||................ ...+ ..........+++++
T Consensus 247 E~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~--------~~~~-----~~~~~~~~~~~s~~~ 312 (336)
T 2vuw_A 247 DLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQ--------MTFK-----TKCNTPAMKQIKRKI 312 (336)
T ss_dssp GGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHT--------CCCS-----SCCCSHHHHHHHHHH
T ss_pred hhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhh--------hccC-----cccchhhhhhcCHHH
Confidence 9998766 889999998777 778889999985411000000000000 0000 000111234678889
Q ss_pred HHHHhhccccCcCCCCCHHHHH
Q 005760 643 FNVAMECTVESPEQRINAKEIV 664 (678)
Q Consensus 643 ~~l~~~cl~~dP~~Rps~~ell 664 (678)
.+|+.+||++| |+.|++
T Consensus 313 ~dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 313 QEFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp HHHHHHGGGSS-----SHHHHH
T ss_pred HHHHHHHhccC-----CHHHHH
Confidence 99999999977 999987
No 263
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-33 Score=314.21 Aligned_cols=309 Identities=20% Similarity=0.206 Sum_probs=179.8
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
|+|++|++++..|..|..+++|++|+|++|+|++..|++|.++++|++|+|++|.+..++.. .|.++++|++|+|
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L 105 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-----WFGPLSSLKYLNL 105 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-----HHTTCTTCCEEEC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-----HhccCCCCcEEEC
Confidence 67788888777777777788888888888888877777788888888888888877766643 2566666666666
Q ss_pred ccCCCcccCChhhhhccc------------------------ccccEEEcccccccccCCccccC---------------
Q 005760 82 SNNPLDGILPKTSVGNLS------------------------HSLEYFEMAYCNVSGGIPEEIGN--------------- 122 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~------------------------~~L~~L~l~~n~l~~~~~~~~~~--------------- 122 (678)
++|++++......+..++ .+|++|++++|.+++..|..+..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 666665432111233333 14555555555555444444332
Q ss_pred ---------CCCCcEEEccCCccCCc------------------------------------------------------
Q 005760 123 ---------LTNLTIIYLGGNKLNGS------------------------------------------------------ 139 (678)
Q Consensus 123 ---------l~~L~~L~l~~N~l~~~------------------------------------------------------ 139 (678)
+++|++|++++|++++.
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 23333334444433321
Q ss_pred -----------------------------------------------------------CChhh-hccCCCCEEEccCCc
Q 005760 140 -----------------------------------------------------------IPSTL-GKLQKLQGLGLENNK 159 (678)
Q Consensus 140 -----------------------------------------------------------~~~~~-~~l~~L~~L~L~~n~ 159 (678)
+|..+ ..+++|++|+|++|.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 00001 123334444444444
Q ss_pred CCCCCC---CcccCCCCccEEecCCCcCCCCCh--hhhhccccccceeccccccccccccccccccccEEEecCCcccCC
Q 005760 160 LEGSIP---DSICHSDELYKLELGGNKLSGSIP--ECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGP 234 (678)
Q Consensus 160 i~~~~~---~~~~~l~~L~~L~l~~N~i~~~~~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~ 234 (678)
+++..| ..+..+++|++|++++|.+++..+ ..+..+++|++|+|++|+++.+|..+..+++|+.|++++|.++..
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l 425 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCC
T ss_pred cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccc
Confidence 432221 123344444444444444443221 234555555555555555555555555555566666666655432
Q ss_pred CCcccccccccccc-------ccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCC-CCccccccccc
Q 005760 235 LPLEIGNLKIARID-------SCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPR-GGSFGNFSAES 306 (678)
Q Consensus 235 ~~~~~~~l~~~~~~-------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~l~~~~ 306 (678)
.......++..++. ...+++|+.|+|++|+|+. +|. ...+++|+.|++++|++++.++. ...+..++.++
T Consensus 426 ~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 426 KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp CTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred cchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEE
Confidence 22111122211111 1367789999999999984 444 46788999999999999987776 46778899999
Q ss_pred cccCccccCCC
Q 005760 307 FEGNELLCGSP 317 (678)
Q Consensus 307 ~~~n~~~c~~~ 317 (678)
+.+|++.|+||
T Consensus 504 l~~N~~~~~~~ 514 (549)
T 2z81_A 504 LHTNPWDCSCP 514 (549)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCccCCCc
Confidence 99999999887
No 264
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-33 Score=317.66 Aligned_cols=303 Identities=23% Similarity=0.291 Sum_probs=239.7
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
+|||++|+|++..|.+|.++++|++|+|++|+|+++.+++|.++++|++|+|++|+|+.++.. .|.++++|++|+
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~-----~f~~L~~L~~L~ 130 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-----AFSGLSSLQKLV 130 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG-----GGTTCTTCCEEE
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH-----HhcCCCCCCEEE
Confidence 489999999977778899999999999999999988899999999999999999999988764 589999999999
Q ss_pred CccCCCcccCChhhhhcccccccEEEccccccccc-CCccccCCCCCcEEEccCCccCCcCChhhhc-------------
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGG-IPEEIGNLTNLTIIYLGGNKLNGSIPSTLGK------------- 146 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------------- 146 (678)
|++|+++++.+.. +.+++ +|++|+|++|.++.. .|..+..+++|++|+|++|++++..+..|..
T Consensus 131 Ls~N~l~~l~~~~-~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 131 AVETNLASLENFP-IGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp CTTSCCCCSTTCC-CTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred CCCCcCCCCChhh-hhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999998776544 77777 899999999999864 5788889999999999999876543332211
Q ss_pred --------------------------------------------------------------------------------
Q 005760 147 -------------------------------------------------------------------------------- 146 (678)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (678)
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005760 147 -------------------------------------------------------------------------------- 146 (678)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (678)
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence
Q ss_pred -cCCCCEEEccCCcCCC--------------------------------------------------CCCCcccCCCCcc
Q 005760 147 -LQKLQGLGLENNKLEG--------------------------------------------------SIPDSICHSDELY 175 (678)
Q Consensus 147 -l~~L~~L~L~~n~i~~--------------------------------------------------~~~~~~~~l~~L~ 175 (678)
+++|+.|++++|.+.. ..+..|..+++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 1222333333332210 0011223334444
Q ss_pred EEecCCCcCCCCChhhhhccccccceeccccccc-c-ccccccccccccEEEecCCcccCCCCccccccccccccccCcc
Q 005760 176 KLELGGNKLSGSIPECFNNLASLRILLLGSNELT-S-IPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLI 253 (678)
Q Consensus 176 ~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~-~-l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~ 253 (678)
.++++.|.+....+..+..+++|+.|+|++|.+. . +|..|..+++|+.|+|++|++++..|..|.+++
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~---------- 518 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS---------- 518 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----------
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC----------
Confidence 5555555555555666677788888899888744 3 466789999999999999999999999998887
Q ss_pred cccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC-Ccc-ccccccccccCccccCCCCCC
Q 005760 254 SLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG-GSF-GNFSAESFEGNELLCGSPNLR 320 (678)
Q Consensus 254 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~-~~l~~~~~~~n~~~c~~~~~~ 320 (678)
+|++|+|++|+|++..+..|..+++|+.|++++|++++..|.. ..+ .+++.+++.+|||.|+|...|
T Consensus 519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHH
Confidence 9999999999999999999999999999999999999988765 444 579999999999999998543
No 265
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.3e-34 Score=320.16 Aligned_cols=303 Identities=25% Similarity=0.286 Sum_probs=256.8
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCc-------------------------------------------------
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNS------------------------------------------------- 32 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~------------------------------------------------- 32 (678)
|+|++|++.+.+|.+++++++|++|+|++|.
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l 165 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence 7899999999999999999999999999984
Q ss_pred -----------------------------ccccCCccccCCCCCCEEEccCccCCCCccchh------------hccccc
Q 005760 33 -----------------------------FSGFIPNTFGNLRNLQALRLSNNYLTSSTLELS------------FLSSLS 71 (678)
Q Consensus 33 -----------------------------i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~------------~~~~~~ 71 (678)
+++ +|..|+++++|++|+|++|.++....... +++.+.
T Consensus 166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred hhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence 444 78899999999999999999987100000 234566
Q ss_pred --CCCCCcEEECccCCCcccCChhhhhcccccccEEEccccc-ccc-cCCccccCC------CCCcEEEccCCccCCcCC
Q 005760 72 --NCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCN-VSG-GIPEEIGNL------TNLTIIYLGGNKLNGSIP 141 (678)
Q Consensus 72 --~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~N~l~~~~~ 141 (678)
++++|++|+|++|.+.+..|.. +..++ +|++|+|++|+ +++ .+|..++.+ ++|++|++++|+++ .+|
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip 321 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTF-LKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP 321 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTT-TTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred hcccCCCCEEEecCCcCCccChHH-HhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence 9999999999999999988865 78887 89999999998 988 889888876 99999999999999 778
Q ss_pred h--hhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhcccc-ccceecccccccccccccccc
Q 005760 142 S--TLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLAS-LRILLLGSNELTSIPLTFWNL 218 (678)
Q Consensus 142 ~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~-L~~L~l~~N~l~~l~~~~~~l 218 (678)
. .|+.+++|++|+|++|.+++.+| .|..+++|++|++++|.++ .+|..+..+++ |++|+|++|.++.+|..+..+
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 7 89999999999999999998888 8999999999999999999 78888999999 999999999999999877765
Q ss_pred c--cccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC
Q 005760 219 K--DILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG 296 (678)
Q Consensus 219 ~--~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 296 (678)
+ +|+.|++++|.+.+..|..+.... .....+++|+.|+|++|+++...+..+..+++|+.|++++|.++..++..
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~---~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLD---PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTC---SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred ccCccCEEECcCCcCCCcchhhhcccc---cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 5 899999999999999998887211 11112348999999999999776677778999999999999999443333
Q ss_pred Cccc--------cccccccccCccc
Q 005760 297 GSFG--------NFSAESFEGNELL 313 (678)
Q Consensus 297 ~~~~--------~l~~~~~~~n~~~ 313 (678)
.... .++.+++.+|...
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC
T ss_pred hccccccccccCCccEEECcCCcCC
Confidence 2211 7888899888765
No 266
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.6e-34 Score=292.02 Aligned_cols=258 Identities=32% Similarity=0.550 Sum_probs=207.5
Q ss_pred CCCCEEEccCccCCCCccchhhcccccCCCCCcEEECcc-CCCcccCChhhhhcccccccEEEcccccccccCCccccCC
Q 005760 45 RNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSN-NPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNL 123 (678)
Q Consensus 45 ~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l 123 (678)
.+++.|+|++|.+.... .++..|.++++|++|+|++ |.+.+..|.. +..++ +|++|+|++|++++..|..|.++
T Consensus 50 ~~l~~L~L~~~~l~~~~---~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLT-QLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCE---ECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCT-TCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCc---ccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCC-CCCEEECcCCeeCCcCCHHHhCC
Confidence 46666667666665310 0112456667777777764 6666666655 55565 67777777777777778888888
Q ss_pred CCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCC-CccEEecCCCcCCCCChhhhhcccccccee
Q 005760 124 TNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSD-ELYKLELGGNKLSGSIPECFNNLASLRILL 202 (678)
Q Consensus 124 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~ 202 (678)
++|++|+|++|.+++..|..|..+++|++|+|++|.+++.+|..+..++ +|+.|++++|.+++..|..+..++ |+.|+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 8999999999988888888888889999999999998878888888887 889999999998888888888887 99999
Q ss_pred cccccccc-ccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCc
Q 005760 203 LGSNELTS-IPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKD 281 (678)
Q Consensus 203 l~~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 281 (678)
|++|.++. +|..+..+++|+.|+|++|.+++..+. +..++ +|++|+|++|++++..|..+..+++|+.
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~----------~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK----------NLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT----------TCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC----------CCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 99998885 455788899999999999998866554 55444 9999999999999889999999999999
Q ss_pred eecccccccccCCCCCccccccccccccCccccCCCCC
Q 005760 282 LNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNL 319 (678)
Q Consensus 282 L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~ 319 (678)
|++++|++++.+|....++.+..+++.+|++.|+.|..
T Consensus 273 L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp EECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred EECcCCcccccCCCCccccccChHHhcCCCCccCCCCC
Confidence 99999999999998888899999999999999998754
No 267
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-33 Score=317.34 Aligned_cols=299 Identities=23% Similarity=0.287 Sum_probs=262.0
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCC-CCccchhhcccccCCCCCcEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLT-SSTLELSFLSSLSNCKSLTLI 79 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~~~~~~l~~L~~L 79 (678)
.|+|++|+++ .+|..+..+++|++|++++|++++..|..|.++++|++|++++|.+. .++. ..|..+++|++|
T Consensus 282 ~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~l~~L~~L 355 (606)
T 3t6q_A 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT-----GCLENLENLREL 355 (606)
T ss_dssp EEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS-----STTTTCTTCCEE
T ss_pred EEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch-----hhhhccCcCCEE
Confidence 3789999999 89999999999999999999999888999999999999999999887 3332 248899999999
Q ss_pred ECccCCCcccC--ChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCCh-hhhccCCCCEEEcc
Q 005760 80 SFSNNPLDGIL--PKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPS-TLGKLQKLQGLGLE 156 (678)
Q Consensus 80 ~L~~n~i~~~~--~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~L~ 156 (678)
++++|.+.+.. +.. +..++ +|++|++++|++.+..|..|..+++|++|++++|++++..+. .|..+++|++|+++
T Consensus 356 ~l~~n~l~~~~~~~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQ-LRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp ECCSSCCCEEEESTTT-TTTCT-TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred ECCCCccccccCcchh-cccCC-CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 99999998775 333 66676 899999999999999999999999999999999999876654 48999999999999
Q ss_pred CCcCCCCCCCcccCCCCccEEecCCCcCCC---CChhhhhccccccceeccccccccc-cccccccccccEEEecCCccc
Q 005760 157 NNKLEGSIPDSICHSDELYKLELGGNKLSG---SIPECFNNLASLRILLLGSNELTSI-PLTFWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 157 ~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~---~~~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~~L~~L~l~~N~l~ 232 (678)
+|.+++..|..+..+++|++|++++|.+.+ ..+..+..+++|+.|+|++|+++.+ |..|..+++|+.|+|++|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 999998889999999999999999999986 2346789999999999999999988 558999999999999999999
Q ss_pred CCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCcccccccc--cc-cc
Q 005760 233 GPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAE--SF-EG 309 (678)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~--~~-~~ 309 (678)
+..|..+.+++ +| .|+|++|++++..|..+..+++|+.|++++|+|.|+|+..+...++..- .+ ..
T Consensus 514 ~~~~~~l~~l~----------~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~ 582 (606)
T 3t6q_A 514 SSSIEALSHLK----------GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDT 582 (606)
T ss_dssp GGGGGGGTTCC----------SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECG
T ss_pred cCChhHhCccc----------cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCC
Confidence 99999998887 99 9999999999999999999999999999999999999976555444321 11 22
Q ss_pred CccccCCCC
Q 005760 310 NELLCGSPN 318 (678)
Q Consensus 310 n~~~c~~~~ 318 (678)
....|..|.
T Consensus 583 ~~~~C~~p~ 591 (606)
T 3t6q_A 583 EDTLCENPP 591 (606)
T ss_dssp GGCBEEESG
T ss_pred CCCeeCCch
Confidence 346677664
No 268
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-33 Score=297.53 Aligned_cols=291 Identities=19% Similarity=0.197 Sum_probs=234.4
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
|++++|.+....+..+..+++|++|+|++|+|+.+.+.+|.++++|++|+|++|.++.++.. .|.++++|++|+|
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L 124 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-----VFQNVPLLTVLVL 124 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEEC
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-----HhcCCCCCCEEEC
Confidence 67888888844445567799999999999999988888999999999999999999887754 4788999999999
Q ss_pred ccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCC------------
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQK------------ 149 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~------------ 149 (678)
++|+++.+.+ ..+..++ +|++|++++|++++..+..|..+++|++|++++|++++.. +..+++
T Consensus 125 ~~n~l~~l~~-~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 125 ERNDLSSLPR-GIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CSSCCCCCCT-TTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred CCCccCcCCH-HHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence 9999985543 3356666 8999999999999888888999999999999999998553 333444
Q ss_pred -------CCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccc-cccccccccc
Q 005760 150 -------LQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSI-PLTFWNLKDI 221 (678)
Q Consensus 150 -------L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~~L 221 (678)
|++|++++|.++. +|.. ..++|+.|++++|.+++. ..+..+++|++|+|++|.++.+ |..+..+++|
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp EEECCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ccCCCCcceEEECCCCeeee-cccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 4555555555552 2222 246899999999999964 5789999999999999999987 5689999999
Q ss_pred cEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCcccc
Q 005760 222 LYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGN 301 (678)
Q Consensus 222 ~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 301 (678)
+.|+|++|++++. +..+.. +++|+.|+|++|+++ ..|..+..+++|+.|++++|+++... ...++.
T Consensus 275 ~~L~L~~n~l~~~-~~~~~~----------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~ 340 (390)
T 3o6n_A 275 ERLYISNNRLVAL-NLYGQP----------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 340 (390)
T ss_dssp CEEECCSSCCCEE-ECSSSC----------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCC
T ss_pred CEEECCCCcCccc-CcccCC----------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhcc
Confidence 9999999999853 333344 449999999999998 45666888999999999999998663 556788
Q ss_pred ccccccccCccccCCCCCCC
Q 005760 302 FSAESFEGNELLCGSPNLRV 321 (678)
Q Consensus 302 l~~~~~~~n~~~c~~~~~~~ 321 (678)
++.+++.+|++.|++...++
T Consensus 341 L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 341 LKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp CSEEECCSSCEEHHHHHHHT
T ss_pred CCEEEcCCCCccchhHHHHH
Confidence 99999999999998764443
No 269
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-33 Score=316.77 Aligned_cols=291 Identities=21% Similarity=0.321 Sum_probs=218.7
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCc-ccc-cCCccccCC------CCCCEEEccCccCCCCccchhhcccccC
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNS-FSG-FIPNTFGNL------RNLQALRLSNNYLTSSTLELSFLSSLSN 72 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~i~~~~~~~~~~~~~~~ 72 (678)
+|+|++|++.+.+|+.+.++++|++|+|++|+ +++ .+|..++++ ++|++|+|++|.++.++.. ..|.+
T Consensus 253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~----~~l~~ 328 (636)
T 4eco_A 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE----TSLQK 328 (636)
T ss_dssp EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH----HHHTT
T ss_pred EEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch----hhhcc
Confidence 37889999999999999999999999999998 887 788888876 8999999999999866641 14788
Q ss_pred CCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCC-CcEEEccCCccCCcCChhhhccC--C
Q 005760 73 CKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTN-LTIIYLGGNKLNGSIPSTLGKLQ--K 149 (678)
Q Consensus 73 l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~l~--~ 149 (678)
+++|++|++++|++++..| .+..++ +|++|+|++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +
T Consensus 329 l~~L~~L~L~~N~l~g~ip--~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP--AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp CTTCCEEECCSCCCEEECC--CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred CCCCCEEeCcCCcCccchh--hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 9999999999999987777 477776 8999999999998 77888888988 999999999998 6777776654 8
Q ss_pred CCEEEccCCcCCCCCCCccc-------CCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccc-----
Q 005760 150 LQGLGLENNKLEGSIPDSIC-------HSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWN----- 217 (678)
Q Consensus 150 L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~----- 217 (678)
|++|+|++|.+++..|..+. .+++|++|+|++|.++...+..+..+++|+.|+|++|+|+.+|..+..
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 88999999998887887777 777888888888888865555566788888888888888877764322
Q ss_pred ---cccccEEEecCCcccCCCCcccc--ccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceec------cc
Q 005760 218 ---LKDILYLNFSSNFFTGPLPLEIG--NLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNL------SF 286 (678)
Q Consensus 218 ---l~~L~~L~l~~N~l~~~~~~~~~--~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l------~~ 286 (678)
+++|+.|+|++|+++ .+|..+. .++ +|+.|+|++|++++ +|..+..+++|+.|++ ++
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~----------~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLP----------YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCT----------TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCC----------CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 227888888888877 4555543 444 66666666666654 4555555666666666 33
Q ss_pred ccccccCCCC-CccccccccccccCcc
Q 005760 287 NKLEGEIPRG-GSFGNFSAESFEGNEL 312 (678)
Q Consensus 287 N~~~~~~~~~-~~~~~l~~~~~~~n~~ 312 (678)
|.+.+..|.. ..+..|+.+++++|..
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC
Confidence 4444444432 4455555555655554
No 270
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-33 Score=288.51 Aligned_cols=255 Identities=26% Similarity=0.399 Sum_probs=235.3
Q ss_pred CCCCEEecCCCcccc--cCCccccCCCCCCEEEccC-ccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhc
Q 005760 21 SKLSILELSDNSFSG--FIPNTFGNLRNLQALRLSN-NYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGN 97 (678)
Q Consensus 21 ~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~ 97 (678)
.++++|+|++|.+++ .+|..|.++++|++|+|++ |.+....+ ..|.++++|++|+|++|++++..|.. +..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p-----~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-----PAIAKLTQLHYLYITHTNVSGAIPDF-LSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-----GGGGGCTTCSEEEEEEECCEEECCGG-GGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC-----hhHhcCCCCCEEECcCCeeCCcCCHH-HhC
Confidence 689999999999998 8999999999999999995 88874332 35889999999999999999888876 777
Q ss_pred ccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccC-CCCEEEccCCcCCCCCCCcccCCCCccE
Q 005760 98 LSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQ-KLQGLGLENNKLEGSIPDSICHSDELYK 176 (678)
Q Consensus 98 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 176 (678)
++ +|++|+|++|.+++..|..|..+++|++|+|++|++++..|..+..++ +|++|+|++|.+++.+|..+..+. |+.
T Consensus 124 l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 124 IK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp CT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CC-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 77 899999999999999999999999999999999999989999999998 999999999999988999999987 999
Q ss_pred EecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccccccccccCccccc
Q 005760 177 LELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLI 256 (678)
Q Consensus 177 L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~ 256 (678)
|++++|.+++..|..|..+++|+.|+|++|.++..+..+..+++|+.|+|++|.+++..|..+..++ +|+
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~----------~L~ 271 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK----------FLH 271 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT----------TCC
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc----------CCC
Confidence 9999999999999999999999999999999997766788999999999999999999999998877 999
Q ss_pred EEEccCCcCCCcchHHHhcccCCCceecccccccccCC
Q 005760 257 SLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIP 294 (678)
Q Consensus 257 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 294 (678)
.|+|++|++++.+|.. ..+++|+.+++++|++.|..|
T Consensus 272 ~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred EEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9999999999888876 889999999999999776544
No 271
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.1e-33 Score=310.28 Aligned_cols=290 Identities=19% Similarity=0.200 Sum_probs=235.7
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
|++++|.+....+..+..+++|++|+|++|.|+++.+.+|.++++|+.|+|++|.++.++.. .|.++++|++|+|
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L 130 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-----VFQNVPLLTVLVL 130 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEEC
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-----HHcCCCCCCEEEe
Confidence 67888888855556677799999999999999988888999999999999999999987754 4788999999999
Q ss_pred ccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCE---------
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQG--------- 152 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--------- 152 (678)
++|.++++.+ ..+..++ +|++|+|++|.+++..|..|.++++|+.|+|++|.+++.. +..+++|+.
T Consensus 131 ~~n~l~~l~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 131 ERNDLSSLPR-GIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CSSCCCCCCT-TTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred eCCCCCCCCH-HHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 9999986544 3366776 8999999999999998889999999999999999998654 333445544
Q ss_pred ----------EEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccc-cccccccccc
Q 005760 153 ----------LGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSI-PLTFWNLKDI 221 (678)
Q Consensus 153 ----------L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~~L 221 (678)
|++++|.++. ++..+ .++|+.|+|++|.+++. ..+..+++|+.|+|++|.++.+ |..|..+++|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp EEECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 4555555442 22222 25799999999999963 6789999999999999999977 5689999999
Q ss_pred cEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCcccc
Q 005760 222 LYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGN 301 (678)
Q Consensus 222 ~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 301 (678)
+.|+|++|.+++. |..+.. +++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++... ...++.
T Consensus 281 ~~L~Ls~N~l~~l-~~~~~~----------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~ 346 (597)
T 3oja_B 281 ERLYISNNRLVAL-NLYGQP----------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 346 (597)
T ss_dssp CEEECTTSCCCEE-ECSSSC----------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCC
T ss_pred CEEECCCCCCCCC-Cccccc----------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCC
Confidence 9999999999853 444444 449999999999999 56677889999999999999998764 456788
Q ss_pred ccccccccCccccCCCCCC
Q 005760 302 FSAESFEGNELLCGSPNLR 320 (678)
Q Consensus 302 l~~~~~~~n~~~c~~~~~~ 320 (678)
+..+++.+|+|.|+|...+
T Consensus 347 L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 347 LKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp CSEEECCSSCEEHHHHHHH
T ss_pred CCEEEeeCCCCCChhHHHH
Confidence 9999999999999876444
No 272
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=307.70 Aligned_cols=143 Identities=22% Similarity=0.247 Sum_probs=95.4
Q ss_pred ccCCCCccEEecCCCcCCCCCh-hhhhccccccceeccccccccc-cccccccccccEEEecCCccc-CCCCcccccccc
Q 005760 168 ICHSDELYKLELGGNKLSGSIP-ECFNNLASLRILLLGSNELTSI-PLTFWNLKDILYLNFSSNFFT-GPLPLEIGNLKI 244 (678)
Q Consensus 168 ~~~l~~L~~L~l~~N~i~~~~~-~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~ 244 (678)
+..+++|++|++++|.+.+..+ ..+..+++|+.|+|++|.++.. |..+..+++|+.|++++|.+. +..|..+.
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~---- 467 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT---- 467 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT----
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh----
Confidence 4444444444444444443332 2344444555555555544432 234444555555555555544 23444444
Q ss_pred ccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC-CccccccccccccCccccCCCCCC
Q 005760 245 ARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPNLR 320 (678)
Q Consensus 245 ~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~l~~~~~~~n~~~c~~~~~~ 320 (678)
.+++|+.|+|++|++++..|..+..+++|+.|++++|++++.++.. ..+..++.+++.+|++.|+||..+
T Consensus 468 ------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 468 ------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp ------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred ------cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 4559999999999999888999999999999999999999887754 678899999999999999998643
No 273
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-32 Score=313.66 Aligned_cols=301 Identities=23% Similarity=0.235 Sum_probs=250.0
Q ss_pred ccccCCcCcccCCccccCCCCCCEEec-CCCccccc--------------------------------------------
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILEL-SDNSFSGF-------------------------------------------- 36 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l-~~n~i~~~-------------------------------------------- 36 (678)
|+|++|++.+.+|.+|+++++|++|+| ++|.+.+.
T Consensus 328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 789999999999999999999999999 77755433
Q ss_pred --------------------------------CCccccCCCCCCEEEccCccCCCCccc---h---------hhccccc-
Q 005760 37 --------------------------------IPNTFGNLRNLQALRLSNNYLTSSTLE---L---------SFLSSLS- 71 (678)
Q Consensus 37 --------------------------------~~~~~~~l~~L~~L~l~~n~i~~~~~~---~---------~~~~~~~- 71 (678)
+|..|+++++|+.|+|++|.++..... . .+++.+.
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence 788899999999999999999871000 0 0223455
Q ss_pred -CCCCCcEEECccCCCcccCChhhhhcccccccEEEccccc-ccc-cCCccccCCC-------CCcEEEccCCccCCcCC
Q 005760 72 -NCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCN-VSG-GIPEEIGNLT-------NLTIIYLGGNKLNGSIP 141 (678)
Q Consensus 72 -~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~l~~N~l~~~~~ 141 (678)
++++|++|+|++|++.+..|.. +..++ +|++|+|++|+ +++ .+|..++.++ +|+.|+|++|+++ .+|
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDF-LYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGG-GGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred ccCCCCCEEECcCCCCCccChHH-HhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 9999999999999999998865 78887 89999999998 888 7888776665 9999999999999 778
Q ss_pred h--hhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhcccc-ccceecccccccccccccccc
Q 005760 142 S--TLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLAS-LRILLLGSNELTSIPLTFWNL 218 (678)
Q Consensus 142 ~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~-L~~L~l~~N~l~~l~~~~~~l 218 (678)
. .|+++++|++|+|++|.++ .+| .|..+++|+.|+|++|.++ .+|..+..+++ |+.|+|++|.|+.+|..+..+
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~ 641 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTT
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhcc
Confidence 7 9999999999999999999 788 8999999999999999999 88888999999 999999999999999877766
Q ss_pred cc--ccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC
Q 005760 219 KD--ILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG 296 (678)
Q Consensus 219 ~~--L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 296 (678)
+. |+.|+|++|++.+.+|.....+ ....+++|+.|+|++|+++...+..+..+++|+.|+|++|.++..++..
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l-----~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSM-----DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCT-----TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred ccCCCCEEECcCCcCCCccccchhhh-----ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 54 9999999999998766432111 1123458999999999999666666678899999999999998444333
Q ss_pred Cc--------cccccccccccCccc
Q 005760 297 GS--------FGNFSAESFEGNELL 313 (678)
Q Consensus 297 ~~--------~~~l~~~~~~~n~~~ 313 (678)
.. ++.|..+++++|...
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred hccccccccccCCccEEECCCCCCc
Confidence 22 127888889888765
No 274
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-32 Score=309.11 Aligned_cols=288 Identities=23% Similarity=0.273 Sum_probs=225.6
Q ss_pred cccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCcc----------------------------CCCCccchhhc
Q 005760 16 FIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNY----------------------------LTSSTLELSFL 67 (678)
Q Consensus 16 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~----------------------------i~~~~~~~~~~ 67 (678)
.+..+++|++|++++|++++..+..|.++++|++|++++|. +..+. +
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~-----~ 398 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-----S 398 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC-----T
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC-----h
Confidence 45556666666666666666666666666666666665554 43332 2
Q ss_pred ccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccC--CcCChhhh
Q 005760 68 SSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLN--GSIPSTLG 145 (678)
Q Consensus 68 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~ 145 (678)
..|..+++|+.|+|++|.+.+..+...+..++ +|++|++++|++.+..+..|..+++|+.|++++|.++ +..|..|.
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 35778899999999999998777766577777 8999999999999888888999999999999999886 46788999
Q ss_pred ccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCCh--------hhhhccccccceeccccccccccc-ccc
Q 005760 146 KLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIP--------ECFNNLASLRILLLGSNELTSIPL-TFW 216 (678)
Q Consensus 146 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~--------~~~~~l~~L~~L~l~~N~l~~l~~-~~~ 216 (678)
++++|++|+|++|+|++..+..|..+++|++|++++|.+++..+ ..|.++++|+.|+|++|+++.+|. .|.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 99999999999999998778889999999999999999985422 247889999999999999999987 589
Q ss_pred ccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHh-cccCCCceecccccccccCCC
Q 005760 217 NLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLE-KLSYLKDLNLSFNKLEGEIPR 295 (678)
Q Consensus 217 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~~~~~~ 295 (678)
++++|+.|+|++|++++..+..|.+++ +|+.|+|++|+|++..+..+. .+++|+.|++++|||.|+|+.
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~----------~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQV----------SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCT----------TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCC----------CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999999999988777787777 999999999999999998888 899999999999999999986
Q ss_pred -CCcccccccc--ccc--cCccccCCCCC
Q 005760 296 -GGSFGNFSAE--SFE--GNELLCGSPNL 319 (678)
Q Consensus 296 -~~~~~~l~~~--~~~--~n~~~c~~~~~ 319 (678)
.+...++... .+. .....|..|..
T Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~C~~p~~ 656 (680)
T 1ziw_A 628 IAWFVNWINETHTNIPELSSHYLCNTPPH 656 (680)
T ss_dssp CSSEECCSSCC------------------
T ss_pred HHHHHHHHHhcCcccccccCCcEECCchH
Confidence 5554454432 222 23567777743
No 275
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.1e-32 Score=280.71 Aligned_cols=282 Identities=24% Similarity=0.296 Sum_probs=236.9
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
+++++++++ .+|..+. ++|++|+|++|+|++..+++|.++++|++|+|++|.++.+... .|.++++|++|+|
T Consensus 38 l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L 109 (332)
T 2ft3_A 38 VQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-----AFSPLRKLQKLYI 109 (332)
T ss_dssp EECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-----GSTTCTTCCEEEC
T ss_pred EECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-----HhhCcCCCCEEEC
Confidence 678889988 7887664 6899999999999988889999999999999999999877543 5889999999999
Q ss_pred ccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccC--CcCChhhhccCCCCEEEccCCc
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLN--GSIPSTLGKLQKLQGLGLENNK 159 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~L~~n~ 159 (678)
++|+++.+.+.. + .+|++|++++|++.+..+..|.++++|+.|++++|.++ +..+..|..+ +|++|++++|+
T Consensus 110 ~~n~l~~l~~~~-~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 110 SKNHLVEIPPNL-P----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CSSCCCSCCSSC-C----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCcCCccCccc-c----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 999998543322 2 48999999999999888888999999999999999996 3677888888 99999999999
Q ss_pred CCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccCCCCcc
Q 005760 160 LEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLE 238 (678)
Q Consensus 160 i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~ 238 (678)
++ .+|..+. ++|+.|++++|.+++..+..|..+++|+.|+|++|+++.++. .+..+++|+.|++++|+++ .+|..
T Consensus 184 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 184 LT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp CS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred CC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence 99 4666554 789999999999998888899999999999999999998876 7899999999999999998 66666
Q ss_pred ccccccccccccCcccccEEEccCCcCCCcchHHHhcc------cCCCceecccccccc--cCCC-CCcccccccccccc
Q 005760 239 IGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKL------SYLKDLNLSFNKLEG--EIPR-GGSFGNFSAESFEG 309 (678)
Q Consensus 239 ~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~l~~N~~~~--~~~~-~~~~~~l~~~~~~~ 309 (678)
+..++ +|+.|+|++|+|++..+..|..+ +.|+.|++++|++.. ..+. ...+..++.+++.+
T Consensus 260 l~~l~----------~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 260 LPDLK----------LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp GGGCT----------TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred hhcCc----------cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 77666 99999999999998877777653 678999999999873 3332 35567788888877
Q ss_pred Cc
Q 005760 310 NE 311 (678)
Q Consensus 310 n~ 311 (678)
|.
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 63
No 276
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=8.8e-32 Score=279.30 Aligned_cols=282 Identities=19% Similarity=0.257 Sum_probs=217.2
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
+++++++++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.++.+.+. .|.++++|++|+|
T Consensus 36 l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L 107 (330)
T 1xku_A 36 VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-----AFAPLVKLERLYL 107 (330)
T ss_dssp EECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-----TTTTCTTCCEEEC
T ss_pred EEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-----HhcCCCCCCEEEC
Confidence 567777777 6776554 5888899999999877777888899999999999988876543 5788889999999
Q ss_pred ccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCC--cCChhhhccCCCCEEEccCCc
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNG--SIPSTLGKLQKLQGLGLENNK 159 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~L~~n~ 159 (678)
++|+++.+ |.. +..+|++|++++|.+++..+..|.++++|+.|++++|.++. ..+..|.++++|++|++++|.
T Consensus 108 s~n~l~~l-~~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 108 SKNQLKEL-PEK----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CSSCCSBC-CSS----CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCcCCcc-Chh----hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 99988744 322 12478899999998888888888888999999999988853 567788888899999999998
Q ss_pred CCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccCCCCcc
Q 005760 160 LEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLE 238 (678)
Q Consensus 160 i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~ 238 (678)
++ .+|..+. ++|++|++++|.+++..+..|..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+++ .+|..
T Consensus 183 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 183 IT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp CC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred cc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh
Confidence 88 4555554 788899999998888778888888889999999998888765 6888888999999999888 56666
Q ss_pred ccccccccccccCcccccEEEccCCcCCCcchHHHhc------ccCCCceeccccccccc--C-CCCCcccccccccccc
Q 005760 239 IGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEK------LSYLKDLNLSFNKLEGE--I-PRGGSFGNFSAESFEG 309 (678)
Q Consensus 239 ~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~~~~~--~-~~~~~~~~l~~~~~~~ 309 (678)
+..++ +|+.|+|++|+|++..+..|.. .+.|+.|++++|++... . ........+..+++++
T Consensus 259 l~~l~----------~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 259 LADHK----------YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp TTTCS----------SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred hccCC----------CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 66555 8889999999888777776643 36778888888888642 1 1223445566666666
Q ss_pred C
Q 005760 310 N 310 (678)
Q Consensus 310 n 310 (678)
|
T Consensus 329 N 329 (330)
T 1xku_A 329 Y 329 (330)
T ss_dssp -
T ss_pred c
Confidence 5
No 277
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.2e-32 Score=280.46 Aligned_cols=271 Identities=21% Similarity=0.210 Sum_probs=236.3
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
+|+|++|++++..+..|..+++|++|+|++|+++++.|++|.++++|++|+|++|.++.++... .++|++|+
T Consensus 56 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~--------~~~L~~L~ 127 (330)
T 1xku_A 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--------PKTLQELR 127 (330)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--------CTTCCEEE
T ss_pred EEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh--------cccccEEE
Confidence 3799999999777778999999999999999999888999999999999999999999877542 27999999
Q ss_pred CccCCCcccCChhhhhcccccccEEEcccccccc--cCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCC
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSG--GIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENN 158 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n 158 (678)
+++|.+++..+.. +..++ +|++|++++|.+.. ..+..|.++++|+.|++++|.++. +|..+. ++|++|+|++|
T Consensus 128 l~~n~l~~~~~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n 202 (330)
T 1xku_A 128 VHENEITKVRKSV-FNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGN 202 (330)
T ss_dssp CCSSCCCBBCHHH-HTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTS
T ss_pred CCCCcccccCHhH-hcCCc-cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCC
Confidence 9999998765543 67777 89999999999974 778889999999999999999984 555444 89999999999
Q ss_pred cCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCcc
Q 005760 159 KLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLE 238 (678)
Q Consensus 159 ~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~ 238 (678)
.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+|++|+++.+|..+..+++|+.|++++|+|++..+..
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhh
Confidence 99988889999999999999999999988888999999999999999999999999999999999999999999888877
Q ss_pred ccccccccccccCcccccEEEccCCcCCC--cchHHHhcccCCCceeccccc
Q 005760 239 IGNLKIARIDSCDLISLISLNLSNNNLSG--AIPASLEKLSYLKDLNLSFNK 288 (678)
Q Consensus 239 ~~~l~~~~~~~~~~~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 288 (678)
|.... .....++|+.|++++|.+.. +.|..|..+..++.+++++|+
T Consensus 283 f~~~~----~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 283 FCPPG----YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCSS----CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCcc----cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 75432 11234589999999999874 667889999999999999985
No 278
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=7.3e-32 Score=280.11 Aligned_cols=266 Identities=20% Similarity=0.260 Sum_probs=215.8
Q ss_pred CCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccccc
Q 005760 22 KLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHS 101 (678)
Q Consensus 22 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~ 101 (678)
+++.+++++|.++ .+|..+. ++|+.|+|++|.++.++.. .|.++++|++|+|++|+++++.+.. +..++ +
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~-~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKD-----DFKGLQHLYALVLVNNKISKIHEKA-FSPLR-K 103 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTT-----TTTTCTTCCEEECCSSCCCEECGGG-STTCT-T
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHh-----HhhCCCCCcEEECCCCccCccCHhH-hhCcC-C
Confidence 6899999999998 5566553 6899999999998877643 5888999999999999998776655 67776 8
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCC--CCCCcccCCCCccEEec
Q 005760 102 LEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEG--SIPDSICHSDELYKLEL 179 (678)
Q Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l 179 (678)
|++|+|++|+++.. |..+. ++|++|++++|++++..+..|.++++|++|++++|.++. ..+..+..+ +|+.|++
T Consensus 104 L~~L~L~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 104 LQKLYISKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CCEEECCSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CCEEECCCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 99999999999844 44433 889999999999987777788999999999999999863 567778777 8999999
Q ss_pred CCCcCCCCChhhhhccccccceecccccccccc-ccccccccccEEEecCCcccCCCCccccccccccccccCcccccEE
Q 005760 180 GGNKLSGSIPECFNNLASLRILLLGSNELTSIP-LTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISL 258 (678)
Q Consensus 180 ~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L 258 (678)
++|.+++ +|..+. ++|++|+|++|.++.++ ..+..+++|+.|++++|.+++..+..+..++ +|+.|
T Consensus 180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~----------~L~~L 246 (332)
T 2ft3_A 180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP----------TLREL 246 (332)
T ss_dssp CSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT----------TCCEE
T ss_pred cCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC----------CCCEE
Confidence 9999985 444443 78999999999999886 4788899999999999999988777777766 99999
Q ss_pred EccCCcCCCcchHHHhcccCCCceecccccccccCCCCC-------ccccccccccccCccccC
Q 005760 259 NLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGG-------SFGNFSAESFEGNELLCG 315 (678)
Q Consensus 259 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~-------~~~~l~~~~~~~n~~~c~ 315 (678)
+|++|+++ .+|..+..+++|+.|++++|++++..+... ....+..+++.+||+.+.
T Consensus 247 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp ECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred ECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc
Confidence 99999998 667778889999999999999987654431 135577888999988743
No 279
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=9.2e-32 Score=297.36 Aligned_cols=285 Identities=20% Similarity=0.234 Sum_probs=223.3
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
+||+++|+++ .+|..++ ++|++|+|++|+|++..|++|.++++|++|+|++|+++.+.+. .|.++++|++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~ 75 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-----VFKFNQELEYLD 75 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-----GGTTCTTCCEEE
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-----HhhcccCCCEEe
Confidence 4799999999 7887776 8999999999999988889999999999999999999977543 589999999999
Q ss_pred CccCCCcccCChhhhhcccccccEEEcccccccc-cCCccccCCCCCcEEEccCCccCCcCChhhhccCCC--CEEEccC
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSG-GIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKL--QGLGLEN 157 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L--~~L~L~~ 157 (678)
|++|+++.+.+. .++ +|++|+|++|.+++ ..|..|+++++|++|++++|++++ ..+..+++| ++|+|++
T Consensus 76 Ls~N~l~~lp~~----~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 76 LSHNKLVKISCH----PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp CCSSCCCEEECC----CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred cCCCceeecCcc----ccC-CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 999999865332 455 89999999999998 478999999999999999999985 567888888 9999999
Q ss_pred CcC--CCCCCCcccCCC---------------------------------------------------------------
Q 005760 158 NKL--EGSIPDSICHSD--------------------------------------------------------------- 172 (678)
Q Consensus 158 n~i--~~~~~~~~~~l~--------------------------------------------------------------- 172 (678)
|.+ ++..|..+..+.
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l 227 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEE
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccc
Confidence 999 666666665532
Q ss_pred --------------------CccEEecCCCcCCCCChhhh----------------------------------------
Q 005760 173 --------------------ELYKLELGGNKLSGSIPECF---------------------------------------- 192 (678)
Q Consensus 173 --------------------~L~~L~l~~N~i~~~~~~~~---------------------------------------- 192 (678)
+|++|++++|.+++.+|..+
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEE
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEE
Confidence 67788888888876665544
Q ss_pred -------------hccccccceecccccccc-ccccccccccccEEEecCCcccC--CCCccccccccccccccCccccc
Q 005760 193 -------------NNLASLRILLLGSNELTS-IPLTFWNLKDILYLNFSSNFFTG--PLPLEIGNLKIARIDSCDLISLI 256 (678)
Q Consensus 193 -------------~~l~~L~~L~l~~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~~~~~~~~~~~L~ 256 (678)
..+++|++|++++|+++. +|..+..+++|+.|++++|++++ ..|..+..++ +|+
T Consensus 308 ~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~----------~L~ 377 (520)
T 2z7x_B 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK----------SLQ 377 (520)
T ss_dssp EEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT----------TCC
T ss_pred EcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC----------CCC
Confidence 567899999999999997 67789999999999999999986 3345565555 677
Q ss_pred EEEccCCcCCCcch-HHHhcccCCCceecccccccccCCCCCccccccccccccCcc
Q 005760 257 SLNLSNNNLSGAIP-ASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL 312 (678)
Q Consensus 257 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~ 312 (678)
.|+|++|++++..| ..+..+++|+.|++++|.+++..+.... ..++.+++++|..
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKI 433 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCC
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCcc
Confidence 77777777765333 3355556666666666666544333211 3455555555543
No 280
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=7.5e-32 Score=303.91 Aligned_cols=138 Identities=22% Similarity=0.206 Sum_probs=112.7
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
.|+|++|++++..|..|.++++|++|+|++|+|+++.|++|.++++|++|+|++|.+..+.+. .|.++++|++|+
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~ 110 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-----SFSGLTSLENLV 110 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-----SSTTCTTCCEEE
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-----hcCCcccCCEEE
Confidence 378889999877777888899999999999999888888899999999999999988887543 578888899999
Q ss_pred CccCCCcccCChhhhhcccccccEEEcccccccc-cCCccccCCCCCcEEEccCCccCCcCChhhh
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSG-GIPEEIGNLTNLTIIYLGGNKLNGSIPSTLG 145 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (678)
|++|.+.+..+.. +..+. +|++|++++|.+.+ .+|..|+++++|++|++++|++++..+..|.
T Consensus 111 L~~n~l~~~~~~~-~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 111 AVETKLASLESFP-IGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp CTTSCCCCSSSSC-CTTCT-TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred ccCCccccccccc-cCCCC-CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 9999887766554 66776 78888888888886 4588888888888888888888766555443
No 281
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.8e-31 Score=274.70 Aligned_cols=277 Identities=25% Similarity=0.378 Sum_probs=166.4
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
|++++|.+. .+|. +..+++|++|+|++|+++...+ |.++++|++|++++|.++.++ .|.++++|++|++
T Consensus 49 L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-------~~~~l~~L~~L~l 117 (347)
T 4fmz_A 49 LVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-------ALQNLTNLRELYL 117 (347)
T ss_dssp EECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------GGTTCTTCSEEEC
T ss_pred EEEeCCccc-cchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-------HHcCCCcCCEEEC
Confidence 567777776 4453 6777778888888887775433 777777788888777777653 3667777777777
Q ss_pred ccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCC
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLE 161 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~ 161 (678)
++|.+.+..+ +..++ +|++|++++|......+. +..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 118 ~~n~i~~~~~---~~~l~-~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 118 NEDNISDISP---LANLT-KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp TTSCCCCCGG---GTTCT-TCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred cCCcccCchh---hccCC-ceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 7777765433 34444 566666666644433322 5555566666666655553222 555555555555555555
Q ss_pred CCCC--------------------CcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccc
Q 005760 162 GSIP--------------------DSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDI 221 (678)
Q Consensus 162 ~~~~--------------------~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L 221 (678)
+..+ ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.++.++ .+..+++|
T Consensus 191 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L 267 (347)
T 4fmz_A 191 DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKL 267 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-hHhcCCCc
Confidence 2211 014444555555555555553322 455555555555555555542 34455555
Q ss_pred cEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCcccc
Q 005760 222 LYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGN 301 (678)
Q Consensus 222 ~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 301 (678)
+.|++++|.+++. ..+. .+++|+.|+|++|++++..+..+..+++|+.|++++|++++..| ...++.
T Consensus 268 ~~L~l~~n~l~~~--~~~~----------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~ 334 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLN----------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSK 334 (347)
T ss_dssp CEEECCSSCCCCC--GGGG----------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTT
T ss_pred CEEEccCCccCCC--hhhc----------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhc
Confidence 5555555555532 1222 33477778888877777777777777778888888887776655 556677
Q ss_pred ccccccccCcc
Q 005760 302 FSAESFEGNEL 312 (678)
Q Consensus 302 l~~~~~~~n~~ 312 (678)
++.+++.+|+.
T Consensus 335 L~~L~l~~N~i 345 (347)
T 4fmz_A 335 MDSADFANQVI 345 (347)
T ss_dssp CSEESSSCC--
T ss_pred cceeehhhhcc
Confidence 77777777764
No 282
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=7.9e-32 Score=309.22 Aligned_cols=289 Identities=19% Similarity=0.286 Sum_probs=201.6
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCc-ccc-cCCccccCCC-------CCCEEEccCccCCCCccchhhcccccC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNS-FSG-FIPNTFGNLR-------NLQALRLSNNYLTSSTLELSFLSSLSN 72 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l~-------~L~~L~l~~n~i~~~~~~~~~~~~~~~ 72 (678)
|+|++|++.+.+|..|.++++|++|+|++|+ +++ .+|..|.+++ +|+.|+|++|.+..++.. ..|.+
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~----~~l~~ 571 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS----ASLQK 571 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH----HHHTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh----hhhhc
Confidence 6778888888888888888888888888887 776 5666555444 888888888888755530 13677
Q ss_pred CCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCC-CcEEEccCCccCCcCChhhhccCC--
Q 005760 73 CKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTN-LTIIYLGGNKLNGSIPSTLGKLQK-- 149 (678)
Q Consensus 73 l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~l~~-- 149 (678)
+++|+.|+|++|+++ ..| .+..++ +|++|+|++|++. .+|..+.++++ |+.|+|++|+++ .+|..+..++.
T Consensus 572 L~~L~~L~Ls~N~l~-~lp--~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVR-HLE--AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp CTTCCEEECTTSCCC-BCC--CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred CCCCCEEECCCCCcc-cch--hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 888888888888887 444 356665 7888888888887 67777778887 888888888887 56666665543
Q ss_pred CCEEEccCCcCCCCCCCcc---c--CCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccc-------
Q 005760 150 LQGLGLENNKLEGSIPDSI---C--HSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWN------- 217 (678)
Q Consensus 150 L~~L~L~~n~i~~~~~~~~---~--~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~------- 217 (678)
|+.|+|++|.+++.+|... . .+++|+.|+|++|.++...+..+..+++|+.|+|++|+|+.+|..+..
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 7777777777776544322 1 334778888888888854444455778888888888888877764332
Q ss_pred -cccccEEEecCCcccCCCCcccc--ccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceeccc------cc
Q 005760 218 -LKDILYLNFSSNFFTGPLPLEIG--NLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSF------NK 288 (678)
Q Consensus 218 -l~~L~~L~l~~N~l~~~~~~~~~--~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~------N~ 288 (678)
+++|+.|+|++|+++ .+|..+. .++ +|+.|+|++|+|++ +|..+..+++|+.|+|++ |.
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~----------~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLP----------YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCT----------TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCC----------CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 237888888888887 5555554 444 77777777777775 465666777777777755 55
Q ss_pred ccccCCCC-CccccccccccccCcc
Q 005760 289 LEGEIPRG-GSFGNFSAESFEGNEL 312 (678)
Q Consensus 289 ~~~~~~~~-~~~~~l~~~~~~~n~~ 312 (678)
+.+..|.. ..+..|+.+++++|..
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccccChHHHhcCCCCCEEECCCCCC
Confidence 55555533 5566677777777665
No 283
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.7e-31 Score=283.92 Aligned_cols=270 Identities=18% Similarity=0.206 Sum_probs=228.7
Q ss_pred CCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcc
Q 005760 19 NASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNL 98 (678)
Q Consensus 19 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l 98 (678)
.+++++.|++++|.++.+.+..|.++++|++|+|++|.++.++.. .|..+++|++|+|++|.+++..+.. +..+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMGFNAIRYLPPHV-FQNV 116 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCCCCTTT-TTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-----hccCCCCcCEEECCCCCCCcCCHHH-hcCC
Confidence 468999999999999977777799999999999999999887653 5899999999999999998876654 6777
Q ss_pred cccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEe
Q 005760 99 SHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLE 178 (678)
Q Consensus 99 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 178 (678)
+ +|++|+|++|+++...+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++.. +..+++|+.|+
T Consensus 117 ~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~ 192 (390)
T 3o6n_A 117 P-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHAN 192 (390)
T ss_dssp T-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEE
T ss_pred C-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceee
Confidence 7 8999999999999777777899999999999999999888889999999999999999998542 34445555555
Q ss_pred c-------------------CCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCccc
Q 005760 179 L-------------------GGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEI 239 (678)
Q Consensus 179 l-------------------~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 239 (678)
+ ++|.+... |. ...++|+.|++++|.++.++ .+..+++|+.|++++|.+++..|..|
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccccccccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHc
Confidence 5 44544422 21 12368999999999999874 68899999999999999998888888
Q ss_pred cccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccccccccccCccc
Q 005760 240 GNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELL 313 (678)
Q Consensus 240 ~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~~ 313 (678)
.+++ +|+.|+|++|++++ .+..+..+++|+.|++++|+++..++....++.++.+++.+|+..
T Consensus 269 ~~l~----------~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 269 VKMQ----------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp TTCS----------SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred cccc----------cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc
Confidence 8777 99999999999985 455567899999999999999977666677889999999999864
No 284
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=309.51 Aligned_cols=296 Identities=21% Similarity=0.173 Sum_probs=214.9
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCccc-ccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFS-GFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLI 79 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L 79 (678)
.|||++|.|++..|..|.++++|++|+|++|.+. .+.|++|.++++|++|+|++|.+..+.+. .|.++++|++|
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-----~~~~l~~L~~L 102 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-----AFQGLFHLFEL 102 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-----SSCSCSSCCCE
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-----HccCCcccCEe
Confidence 3789999999888888999999999999999554 34488899999999999999998876543 58889999999
Q ss_pred ECccCCCcccCCh-hhhhcccccccEEEcccccccccCC-ccccCCCCCcEEEccCCccCCcCChhhhcc--CCCCEEEc
Q 005760 80 SFSNNPLDGILPK-TSVGNLSHSLEYFEMAYCNVSGGIP-EEIGNLTNLTIIYLGGNKLNGSIPSTLGKL--QKLQGLGL 155 (678)
Q Consensus 80 ~L~~n~i~~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~L 155 (678)
+|++|.+++..+. ..+..++ +|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..|..+ ++|+.|+|
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 9999998875443 2356666 89999999999987765 578899999999999999988888888777 78888888
Q ss_pred cCCcCCCCCCCcccCCCC------ccEEecCCCcCCCCChhhhhc-----------------------------------
Q 005760 156 ENNKLEGSIPDSICHSDE------LYKLELGGNKLSGSIPECFNN----------------------------------- 194 (678)
Q Consensus 156 ~~n~i~~~~~~~~~~l~~------L~~L~l~~N~i~~~~~~~~~~----------------------------------- 194 (678)
++|.+.+..|..+..+++ |+.|++++|.+++..+..+..
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 888887666666655554 777777777666544433322
Q ss_pred ---cccccceecccccccccc-ccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcch
Q 005760 195 ---LASLRILLLGSNELTSIP-LTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIP 270 (678)
Q Consensus 195 ---l~~L~~L~l~~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 270 (678)
.++|+.|+|++|.++.++ ..|..+++|+.|+|++|.+.+..+..|.+++ +|+.|+|++|++++..+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~----------~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD----------NLQVLNLSYNLLGELYS 331 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS----------SCCEEEEESCCCSCCCS
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC----------CCCEEECCCCCCCccCH
Confidence 145777777777776653 3566677777777777777766666666555 66666666666666666
Q ss_pred HHHhcccCCCceecccccccccCCC-CCccccccccccccCcc
Q 005760 271 ASLEKLSYLKDLNLSFNKLEGEIPR-GGSFGNFSAESFEGNEL 312 (678)
Q Consensus 271 ~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~l~~~~~~~n~~ 312 (678)
..+..+++|+.|++++|.+....+. ...+..|+.+++.+|..
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 6666666666666666666554443 24455566666666554
No 285
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.8e-31 Score=297.70 Aligned_cols=286 Identities=21% Similarity=0.207 Sum_probs=205.7
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
+|+|++|++++..|+.|..+++|++|+|++|+|+. +|.. .+++|++|+|++|++..++. +..|.++++|++|+
T Consensus 80 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~----p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPV----CKEFGNLTKLTFLG 152 (562)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCC----CGGGGGCTTCCEEE
T ss_pred EEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCc----hHhhcccCcccEEe
Confidence 47899999998889999999999999999999994 5555 89999999999999987653 13588899999999
Q ss_pred CccCCCcccCChhhhhcccccc--cEEEcccccc--cccCCccccCCC--------------------------------
Q 005760 81 FSNNPLDGILPKTSVGNLSHSL--EYFEMAYCNV--SGGIPEEIGNLT-------------------------------- 124 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L--~~L~l~~n~l--~~~~~~~~~~l~-------------------------------- 124 (678)
|++|++.+.. +..+. +| ++|++++|.+ ++..|..|..+.
T Consensus 153 L~~n~l~~~~----~~~l~-~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 153 LSAAKFRQLD----LLPVA-HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp EECSBCCTTT----TGGGT-TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred cCCCccccCc----hhhhh-hceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 9999987532 23332 33 6677777666 544444444332
Q ss_pred -------------------------------------------------CCcEEEccCCccCCcCChhh-----------
Q 005760 125 -------------------------------------------------NLTIIYLGGNKLNGSIPSTL----------- 144 (678)
Q Consensus 125 -------------------------------------------------~L~~L~l~~N~l~~~~~~~~----------- 144 (678)
+|++|++++|.+++.+|..+
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 45555556666554444433
Q ss_pred ------------------------------------------hccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCC
Q 005760 145 ------------------------------------------GKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGN 182 (678)
Q Consensus 145 ------------------------------------------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N 182 (678)
..+++|++|+|++|.+++..|..+..+++|++|++++|
T Consensus 308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 45677777777777777667777777777777777777
Q ss_pred cCCCCC--hhhhhccccccceecccccccc-ccc-cccccccccEEEecCCcccCCCCcccc-ccccc--------ccc-
Q 005760 183 KLSGSI--PECFNNLASLRILLLGSNELTS-IPL-TFWNLKDILYLNFSSNFFTGPLPLEIG-NLKIA--------RID- 248 (678)
Q Consensus 183 ~i~~~~--~~~~~~l~~L~~L~l~~N~l~~-l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~~--------~~~- 248 (678)
.+++.. |..+..+++|+.|+|++|+++. +|. .+..+++|+.|++++|++++..|..+. .++.. .++
T Consensus 388 ~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~ 467 (562)
T 3a79_B 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPK 467 (562)
T ss_dssp CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCT
T ss_pred CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccCh
Confidence 777533 3556777777777777777776 665 366666777777777776655554442 22211 111
Q ss_pred -ccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCc
Q 005760 249 -SCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGS 298 (678)
Q Consensus 249 -~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 298 (678)
...+++|+.|+|++|+|+++.+..+..+++|+.|++++|+|.|+|+..+.
T Consensus 468 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 12567999999999999966555599999999999999999999987654
No 286
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=6.8e-32 Score=277.03 Aligned_cols=274 Identities=21% Similarity=0.253 Sum_probs=193.2
Q ss_pred CEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccC--Chhhhhccccc
Q 005760 24 SILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGIL--PKTSVGNLSHS 101 (678)
Q Consensus 24 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~~l~~~ 101 (678)
+.++++++.++ .+|..+. ++|++|+|++|.++.++.. .|.++++|++|+|++|.++... +.. +..++ +
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~-~ 79 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHG-----VFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTT-S 79 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTT-----TTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCS-C
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHh-----HhhccccCCEEECCCCccCcccCcccc-ccccc-c
Confidence 45566666665 3343332 4566666666666655533 2556666666666666665332 222 23333 5
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCC-hhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 102 LEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIP-STLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
|++|+|++|.+.. +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 6666666666663 45557778888888888888875544 577888888888888888887777778888888888888
Q ss_pred CCcCCC-CChhhhhccccccceeccccccccc-cccccccccccEEEecCCcccCCCCccccccccccccccCcccccEE
Q 005760 181 GNKLSG-SIPECFNNLASLRILLLGSNELTSI-PLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISL 258 (678)
Q Consensus 181 ~N~i~~-~~~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L 258 (678)
+|.+.+ ..|..+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|.+++..+..+.+++ +|+.|
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~----------~L~~L 228 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN----------SLQVL 228 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT----------TCCEE
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc----------cCCEe
Confidence 888875 4677788888888888888888877 45788888888888888888877766666665 88899
Q ss_pred EccCCcCCCcchHHHhccc-CCCceecccccccccCCCCCccccc---cccccccCccccCCCC
Q 005760 259 NLSNNNLSGAIPASLEKLS-YLKDLNLSFNKLEGEIPRGGSFGNF---SAESFEGNELLCGSPN 318 (678)
Q Consensus 259 ~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~~~~~~~~l---~~~~~~~n~~~c~~~~ 318 (678)
+|++|++++..+..+..++ +|++|++++|+|+|+++..+...++ ..+....+...|..|.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 9999988888888888874 8999999999998887754333333 3445566777777764
No 287
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1e-31 Score=281.59 Aligned_cols=272 Identities=20% Similarity=0.207 Sum_probs=134.8
Q ss_pred cccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECc
Q 005760 3 QMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFS 82 (678)
Q Consensus 3 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~ 82 (678)
+.++++++ .+|..+. ++|++|+|++|+|+++.++.|.++++|++|+|++|.++.++.. .|.++++|++|+|+
T Consensus 37 ~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 37 KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-----SFSSLGSLEHLDLS 108 (353)
T ss_dssp ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-----TTTTCTTCCEEECC
T ss_pred eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-----hcCCCCCCCEEECC
Confidence 44555555 4554433 2566666666666655555566666666666666655544322 35555666666666
Q ss_pred cCCCcccCChhhhhcccccccEEEcccccccccCC-ccccCCCCCcEEEccCC-ccCCcCChhhhccCCCCEEEccCCcC
Q 005760 83 NNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIP-EEIGNLTNLTIIYLGGN-KLNGSIPSTLGKLQKLQGLGLENNKL 160 (678)
Q Consensus 83 ~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~L~~n~i 160 (678)
+|+++++.+ ..+..++ +|++|++++|++++..+ ..|.++++|++|++++| .+....+..|.++++|++|++++|.+
T Consensus 109 ~n~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 109 YNYLSNLSS-SWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp SSCCSSCCH-HHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCcCCcCCH-hHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 665553322 2234443 55555555555554333 34555555555555555 34444444555555555555555555
Q ss_pred CCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc-c---ccccccccEEEecCCcccCC--
Q 005760 161 EGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL-T---FWNLKDILYLNFSSNFFTGP-- 234 (678)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~---~~~l~~L~~L~l~~N~l~~~-- 234 (678)
++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.++.++. . ....+.++.++|++|.+.+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 54445555555555555555555543222233345555555555555554322 1 12233444555555544321
Q ss_pred --CCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCC
Q 005760 235 --LPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIP 294 (678)
Q Consensus 235 --~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 294 (678)
+|..+.+++ +|+.|+|++|+++.+.+..+..+++|++|++++|++.|+++
T Consensus 267 ~~l~~~l~~l~----------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 FQVMKLLNQIS----------GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHTCT----------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhHHHHhccc----------CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 122222222 55555555555553333334555555555555555555554
No 288
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=5.6e-31 Score=298.46 Aligned_cols=304 Identities=21% Similarity=0.241 Sum_probs=237.6
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
+|+|++|+|++..|.+|.++++|++|+|++|+|++..+++|.++++|++|+|++|+++.++.. .|.++++|++|+
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~-----~~~~L~~L~~L~ 154 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKELN 154 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC-----CCTTCTTCCEEE
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh-----hhhcCcccCeec
Confidence 478899999876677888899999999999999877778899999999999999988887754 477778888888
Q ss_pred CccCCCcccCChhhhhcccccccEEEcccccccccCCcccc---------------------------------------
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIG--------------------------------------- 121 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~--------------------------------------- 121 (678)
|++|.+++......+..++ +|++|+|++|++++..+..|.
T Consensus 155 Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~ 233 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 233 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred cccCccccCCCchhhccch-hhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhc
Confidence 8888776654444455565 677777777766543222111
Q ss_pred --------------------------------------------------------------------------------
Q 005760 122 -------------------------------------------------------------------------------- 121 (678)
Q Consensus 122 -------------------------------------------------------------------------------- 121 (678)
T Consensus 234 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 313 (635)
T 4g8a_A 234 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSL 313 (635)
T ss_dssp CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEE
T ss_pred ccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccc
Confidence
Q ss_pred -------------------------------------------------------CCCCCcEEEccCCccCCc-------
Q 005760 122 -------------------------------------------------------NLTNLTIIYLGGNKLNGS------- 139 (678)
Q Consensus 122 -------------------------------------------------------~l~~L~~L~l~~N~l~~~------- 139 (678)
.+++|+.|++++|.+...
T Consensus 314 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 393 (635)
T 4g8a_A 314 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 393 (635)
T ss_dssp ESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred cccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccch
Confidence 133455555555544210
Q ss_pred -------------------------------------------CChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccE
Q 005760 140 -------------------------------------------IPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYK 176 (678)
Q Consensus 140 -------------------------------------------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 176 (678)
.+..|.++++++.++++.|.+.+..+..+..+++|+.
T Consensus 394 ~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~ 473 (635)
T 4g8a_A 394 FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473 (635)
T ss_dssp HSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred hhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 1124556778888999999999888889999999999
Q ss_pred EecCCCcCC-CCChhhhhccccccceecccccccccc-ccccccccccEEEecCCcccCCCCccccccccccccccCccc
Q 005760 177 LELGGNKLS-GSIPECFNNLASLRILLLGSNELTSIP-LTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLIS 254 (678)
Q Consensus 177 L~l~~N~i~-~~~~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~ 254 (678)
|++++|.+. ...|+.|..+++|+.|+|++|+|+.++ ..|.++++|+.|+|++|+|++..+..|.+++ +
T Consensus 474 L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~----------~ 543 (635)
T 4g8a_A 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN----------S 543 (635)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT----------T
T ss_pred hhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC----------C
Confidence 999999854 467888999999999999999999885 5799999999999999999999998888887 9
Q ss_pred ccEEEccCCcCCCcchHHHhcc-cCCCceecccccccccCCCCCcccccccc---ccccCccccCCCCCC
Q 005760 255 LISLNLSNNNLSGAIPASLEKL-SYLKDLNLSFNKLEGEIPRGGSFGNFSAE---SFEGNELLCGSPNLR 320 (678)
Q Consensus 255 L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~~~~~~~~~~~~l~~~---~~~~n~~~c~~~~~~ 320 (678)
|+.|+|++|+|++..|..+..+ ++|+.|+|++|||.|+|...++..+++.. ........|..|...
T Consensus 544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~ 613 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 613 (635)
T ss_dssp CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTT
T ss_pred CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHH
Confidence 9999999999999999999988 68999999999999999876665555432 122345788888544
No 289
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.8e-31 Score=293.37 Aligned_cols=272 Identities=18% Similarity=0.202 Sum_probs=230.5
Q ss_pred CCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcc
Q 005760 19 NASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNL 98 (678)
Q Consensus 19 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l 98 (678)
.+.+++.|++++|.++.+.+..|.++++|+.|+|++|.+..++.. .|..+++|++|+|++|.++++.+.. +..+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMGFNAIRYLPPHV-FQNV 122 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCCCCTTT-TTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-----HhcCCCCCCEEECCCCcCCCCCHHH-HcCC
Confidence 468899999999999988888899999999999999999987653 5899999999999999999876654 7777
Q ss_pred cccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEe
Q 005760 99 SHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLE 178 (678)
Q Consensus 99 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 178 (678)
+ +|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++.. +..+++|+.|+
T Consensus 123 ~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 123 P-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHAN 198 (597)
T ss_dssp T-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred C-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence 7 8999999999999887888899999999999999999888889999999999999999998543 44455565555
Q ss_pred cCCCcCCCC------------------ChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCcccc
Q 005760 179 LGGNKLSGS------------------IPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIG 240 (678)
Q Consensus 179 l~~N~i~~~------------------~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 240 (678)
+++|.+++. .+.. ..++|+.|+|++|.++.. ..+..+++|+.|+|++|.+++..|..|.
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 555555421 1111 125788888888888875 5688999999999999999999898888
Q ss_pred ccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccccccccccCcccc
Q 005760 241 NLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLC 314 (678)
Q Consensus 241 ~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~~c 314 (678)
+++ +|+.|+|++|++++ +|..+..+++|+.|+|++|+++..++....++.|..+++.+|+...
T Consensus 276 ~l~----------~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 276 KMQ----------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp TCS----------SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred Ccc----------CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC
Confidence 877 99999999999996 4666678999999999999999776666778899999999998743
No 290
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=291.82 Aligned_cols=305 Identities=25% Similarity=0.227 Sum_probs=248.6
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
|+|++|++++..+.+|..+++|++|+|++|+|+++.+++|.++++|++|+|++|.+..++.. .|.++++|++|++
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L 107 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-----AFSGLSSLQKLVA 107 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-----TTTTCTTCCEEEC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-----hhcCccccccccc
Confidence 78999999977788899999999999999999988888999999999999999998877643 5889999999999
Q ss_pred ccCCCcccCChhhhhcccccccEEEccccccccc-CCccccCCCCCcEEEccCCccCCcCChhhhccCCC----CEEEcc
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGG-IPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKL----QGLGLE 156 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L----~~L~L~ 156 (678)
++|+++++.+.. +..+. +|++|++++|.+++. +|..|.++++|++|++++|++++..+..|..+++| ++|+++
T Consensus 108 ~~n~l~~l~~~~-~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 108 VETNLASLENFP-IGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp TTSCCCCSTTCS-CTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccCCCcc-ccccc-cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999998765544 66776 899999999999874 68889999999999999999988778888888888 889999
Q ss_pred CCcCCCCCCCcccCCCCccEEecCCC------------------------------------------------------
Q 005760 157 NNKLEGSIPDSICHSDELYKLELGGN------------------------------------------------------ 182 (678)
Q Consensus 157 ~n~i~~~~~~~~~~l~~L~~L~l~~N------------------------------------------------------ 182 (678)
+|.+++..+..+... +|+.|++++|
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 999987666666554 7888887776
Q ss_pred ----cCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCcccccccccc---------ccc
Q 005760 183 ----KLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIAR---------IDS 249 (678)
Q Consensus 183 ----~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~---------~~~ 249 (678)
.+.+..+..+..+++|+.|++++|.++.+|..+..+ +|+.|++++|.+.......+..++... ...
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence 333455667778889999999999999998888888 899999999988844444444333221 112
Q ss_pred cCcccccEEEccCCcCCCcc--hHHHhcccCCCceecccccccccCCCCCccccccccccccCccccC
Q 005760 250 CDLISLISLNLSNNNLSGAI--PASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCG 315 (678)
Q Consensus 250 ~~~~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~~c~ 315 (678)
..+++|+.|++++|++++.. +..+..+++|+.|++++|.+.+..+....+..+..+++.+|.....
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc
Confidence 46789999999999998664 7888999999999999999988777667778899999998876543
No 291
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.9e-30 Score=268.16 Aligned_cols=272 Identities=27% Similarity=0.331 Sum_probs=196.3
Q ss_pred ccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhh
Q 005760 17 IFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVG 96 (678)
Q Consensus 17 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 96 (678)
+..+++|++|++++|.+... + .|..+++|++|++++|.++.++. |..+++|++|++++|.++.+. .+.
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~-------~~~l~~L~~L~L~~n~i~~~~---~~~ 107 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP-------LSNLVKLTNLYIGTNKITDIS---ALQ 107 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG---GGT
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh-------hhcCCcCCEEEccCCcccCch---HHc
Confidence 56789999999999999854 3 49999999999999999988662 789999999999999998652 366
Q ss_pred cccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccE
Q 005760 97 NLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYK 176 (678)
Q Consensus 97 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 176 (678)
.++ +|++|++++|.+.+..+ +..+++|+.|++++|..... +..+..+++|++|++++|.+++..+ +..+++|+.
T Consensus 108 ~l~-~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 108 NLT-NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TCT-TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred CCC-cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 776 89999999999997644 88999999999999976533 4559999999999999999984433 889999999
Q ss_pred EecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccc---ccc-------
Q 005760 177 LELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLK---IAR------- 246 (678)
Q Consensus 177 L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~---~~~------- 246 (678)
|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.+++..+ +..++ ..+
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 9999999996543 7777778888888877777655 6677777777777777765443 33332 000
Q ss_pred -c-cccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC-CccccccccccccCccc
Q 005760 247 -I-DSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELL 313 (678)
Q Consensus 247 -~-~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~l~~~~~~~n~~~ 313 (678)
+ .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+.. ..++.++.+++.+|++.
T Consensus 257 ~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 257 DINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 0 012333555555555555533 23445555555555555554433321 33445555555555543
No 292
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.5e-30 Score=264.05 Aligned_cols=209 Identities=23% Similarity=0.232 Sum_probs=179.2
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCc-cCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEec
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNK-LNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLEL 179 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 179 (678)
+|++|++++|.+++..+..|.++++|++|++++|. ++...+..|..+++|++|+|++|.+++..+..|..+++|++|++
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence 44444444444445556678888999999999997 87666888899999999999999998777888889999999999
Q ss_pred CCCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccCCCCccccccccccccccCcccccEE
Q 005760 180 GGNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISL 258 (678)
Q Consensus 180 ~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L 258 (678)
++|.+++..+..|..+++|+.|+|++|+++.++. .+..+++|+.|++++|.+++..|..|.+++ +|+.|
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------~L~~L 206 (285)
T 1ozn_A 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG----------RLMTL 206 (285)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT----------TCCEE
T ss_pred CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc----------cccEe
Confidence 9999998777788999999999999999998877 588999999999999999988888887777 99999
Q ss_pred EccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccccccccccCccccCCCCC
Q 005760 259 NLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNL 319 (678)
Q Consensus 259 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~ 319 (678)
+|++|++++..+..+..+++|+.|++++|+|.|+++..+.+.++.......+.+.|..|..
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH
Confidence 9999999998888899999999999999999999988777778888888888888887743
No 293
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=280.45 Aligned_cols=260 Identities=20% Similarity=0.208 Sum_probs=217.0
Q ss_pred CCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccc
Q 005760 21 SKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSH 100 (678)
Q Consensus 21 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 100 (678)
.+.+.++.+++.++ .+|..+. ++++.|+|++|++..++.. .|.++++|++|+|++|.|+.+.+.. +..++
T Consensus 43 ~~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~- 112 (440)
T 3zyj_A 43 NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVN-----SFKHLRHLEILQLSRNHIRTIEIGA-FNGLA- 112 (440)
T ss_dssp TTSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTT-----TTSSCSSCCEEECCSSCCCEECGGG-GTTCS-
T ss_pred CCCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHH-----HhhCCCCCCEEECCCCcCCccChhh-ccCCc-
Confidence 34678888888888 4566554 6888899999988877654 5788888999999999888765544 66676
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccC-CcCCCCCCCcccCCCCccEEec
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLEN-NKLEGSIPDSICHSDELYKLEL 179 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l 179 (678)
+|++|+|++|+++...+..|..+++|++|+|++|+++...+..|.++++|++|+|++ |.++...+..|.++++|++|+|
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence 789999999988887778899999999999999999877777899999999999998 4555444567889999999999
Q ss_pred CCCcCCCCChhhhhccccccceeccccccccc-cccccccccccEEEecCCcccCCCCccccccccccccccCcccccEE
Q 005760 180 GGNKLSGSIPECFNNLASLRILLLGSNELTSI-PLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISL 258 (678)
Q Consensus 180 ~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L 258 (678)
++|.++. +| .+..+++|+.|+|++|+|+.+ |..|.++++|+.|+|++|.+++..+..|.+++ +|+.|
T Consensus 193 ~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------~L~~L 260 (440)
T 3zyj_A 193 AMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ----------SLVEI 260 (440)
T ss_dssp TTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT----------TCCEE
T ss_pred CCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC----------CCCEE
Confidence 9999994 44 488899999999999999988 45799999999999999999988888887777 99999
Q ss_pred EccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccc
Q 005760 259 NLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNF 302 (678)
Q Consensus 259 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l 302 (678)
+|++|+|++..+..+..+++|+.|+|++|+|.|+|...+...++
T Consensus 261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~ 304 (440)
T 3zyj_A 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWI 304 (440)
T ss_dssp ECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHH
T ss_pred ECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHH
Confidence 99999999888888999999999999999999999765443333
No 294
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=273.98 Aligned_cols=282 Identities=20% Similarity=0.215 Sum_probs=240.2
Q ss_pred CCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcc
Q 005760 19 NASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNL 98 (678)
Q Consensus 19 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l 98 (678)
.++.....++++|.++ .+|..+. ++|++|++++|.++.++.. .|.++++|++|+|++|+++++.+.. +..+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l 99 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNS-----DLQRCVNLQALVLTSNGINTIEEDS-FSSL 99 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTT-----TTTTCTTCCEEECTTSCCCEECTTT-TTTC
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHH-----HhccCCCCCEEECCCCccCccCHhh-cCCC
Confidence 3456677999999999 4566555 4999999999999987753 5889999999999999999877655 6777
Q ss_pred cccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCC-hhhhccCCCCEEEccCC-cCCCCCCCcccCCCCccE
Q 005760 99 SHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIP-STLGKLQKLQGLGLENN-KLEGSIPDSICHSDELYK 176 (678)
Q Consensus 99 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~ 176 (678)
+ +|++|+|++|++++..+..|.++++|++|++++|++++..+ ..|..+++|++|++++| .++...+..|..+++|++
T Consensus 100 ~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 G-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp T-TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred C-CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 6 89999999999998777779999999999999999995554 58999999999999999 577666788999999999
Q ss_pred EecCCCcCCCCChhhhhccccccceecccccccccccc-ccccccccEEEecCCcccCCCCccccccccccccccCcccc
Q 005760 177 LELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLT-FWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISL 255 (678)
Q Consensus 177 L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L 255 (678)
|++++|.+++..|..+..+++|++|++++|+++.+|.. +..+++|+.|++++|.+++..+..+.... ..+.+
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~-------~~~~l 251 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE-------TNSLI 251 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------CCCCC
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc-------ccchh
Confidence 99999999998899999999999999999999999875 55689999999999999987766554322 23478
Q ss_pred cEEEccCCcCCC----cchHHHhcccCCCceecccccccccCCCC-CccccccccccccCccccCCC
Q 005760 256 ISLNLSNNNLSG----AIPASLEKLSYLKDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSP 317 (678)
Q Consensus 256 ~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~l~~~~~~~n~~~c~~~ 317 (678)
+.++|++|.+++ .+|..+..+++|+.|++++|+++..++.. ..+.+++.+++.+|++.|+||
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 899999998876 46778899999999999999999665554 678899999999999999987
No 295
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=5.8e-30 Score=278.53 Aligned_cols=287 Identities=26% Similarity=0.392 Sum_probs=148.9
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
|+|++|.+++..| +..+++|++|++++|++++..+ |.++++|++|++++|.++.++. +.++++|++|++
T Consensus 73 L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~L~~L~l 141 (466)
T 1o6v_A 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-------LKNLTNLNRLEL 141 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-------GTTCTTCSEEEE
T ss_pred EECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-------HcCCCCCCEEEC
Confidence 6777777774433 6677777777777777775433 6677777777777776665541 445555555555
Q ss_pred ccCCCcccCCh------------------hhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChh
Q 005760 82 SNNPLDGILPK------------------TSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPST 143 (678)
Q Consensus 82 ~~n~i~~~~~~------------------~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (678)
++|.+.+.... ..+..++ +|++|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT-TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCC-CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--
Confidence 55555432110 0122222 455566666555543 235555555555555555553332
Q ss_pred hhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccE
Q 005760 144 LGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILY 223 (678)
Q Consensus 144 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~ 223 (678)
++.+++|++|++++|.+++ + ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.
T Consensus 217 ~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTN 291 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCe
Confidence 4445555555555555542 2 234445555555555555543322 4444555555555555544443 444444444
Q ss_pred EEecCCcccCCCCccccccc---ccc---------ccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccc
Q 005760 224 LNFSSNFFTGPLPLEIGNLK---IAR---------IDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEG 291 (678)
Q Consensus 224 L~l~~N~l~~~~~~~~~~l~---~~~---------~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 291 (678)
|++++|++.+..+ +..++ ..+ .+...+++|+.|++++|++++. ..+..+++|+.|++++|++++
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 4444444443322 22221 000 0011233666666666666544 245566666666666666665
Q ss_pred cCCCCCccccccccccccCcccc
Q 005760 292 EIPRGGSFGNFSAESFEGNELLC 314 (678)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~n~~~c 314 (678)
..| ...++.+..+++.+|++..
T Consensus 368 ~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 368 LTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CGG-GTTCTTCCEEECCCEEEEC
T ss_pred cch-hhcCCCCCEEeccCCcccC
Confidence 554 4555666666666666554
No 296
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.2e-30 Score=282.80 Aligned_cols=259 Identities=21% Similarity=0.213 Sum_probs=215.7
Q ss_pred CCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccc
Q 005760 21 SKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSH 100 (678)
Q Consensus 21 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 100 (678)
.+.+.++.+++.++ .+|..+. ++|+.|+|++|.++.++.. .|.++++|++|+|++|+|+++.+.. +..++
T Consensus 54 ~~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~- 123 (452)
T 3zyi_A 54 NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQAD-----TFRHLHHLEVLQLGRNSIRQIEVGA-FNGLA- 123 (452)
T ss_dssp SSSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTT-----TTTTCTTCCEEECCSSCCCEECTTT-TTTCT-
T ss_pred CCCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHH-----HcCCCCCCCEEECCCCccCCcChhh-ccCcc-
Confidence 34677888888888 4565554 5888888888888876643 5788888888888888888776654 66676
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccC-CcCCCCCCCcccCCCCccEEec
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLEN-NKLEGSIPDSICHSDELYKLEL 179 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l 179 (678)
+|++|+|++|+++...+..|.++++|++|+|++|+++.+.+..|.++++|++|+|++ |.+....+..|.++++|++|+|
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 788888888888888788899999999999999999877777899999999999998 5555444567889999999999
Q ss_pred CCCcCCCCChhhhhccccccceeccccccccc-cccccccccccEEEecCCcccCCCCccccccccccccccCcccccEE
Q 005760 180 GGNKLSGSIPECFNNLASLRILLLGSNELTSI-PLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISL 258 (678)
Q Consensus 180 ~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L 258 (678)
++|.+++. | .+..+++|+.|+|++|+|+.+ |..|..+++|+.|+|++|.+++..+..|.+++ +|+.|
T Consensus 204 ~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------~L~~L 271 (452)
T 3zyi_A 204 GMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA----------SLVEL 271 (452)
T ss_dssp TTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT----------TCCEE
T ss_pred CCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC----------CCCEE
Confidence 99999954 3 488899999999999999987 55799999999999999999988888887777 99999
Q ss_pred EccCCcCCCcchHHHhcccCCCceecccccccccCCCCCcccc
Q 005760 259 NLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGN 301 (678)
Q Consensus 259 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 301 (678)
+|++|+|++..+..+..+++|+.|+|++|+|.|+|...+...+
T Consensus 272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~ 314 (452)
T 3zyi_A 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWW 314 (452)
T ss_dssp ECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHH
T ss_pred ECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHH
Confidence 9999999988888889999999999999999999986544333
No 297
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.2e-30 Score=290.46 Aligned_cols=198 Identities=21% Similarity=0.227 Sum_probs=163.0
Q ss_pred cccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECc
Q 005760 3 QMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFS 82 (678)
Q Consensus 3 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~ 82 (678)
|.++++++ .+|..+. ++|++|+|++|+|++..|.+|.++++|++|+|++|+++.++.. .|.++++|++|+|+
T Consensus 11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-----~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-----AFYSLGSLEHLDLS 82 (549)
T ss_dssp ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT-----TTTTCTTCCEEECT
T ss_pred ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh-----hccccccCCEEECC
Confidence 56788888 7887665 7999999999999998899999999999999999999977643 58999999999999
Q ss_pred cCCCcccCChhhhhcccccccEEEccccccccc-CCccccCCCCCcEEEccCCc-cCCcCChhhhccCCCCEEEccCCcC
Q 005760 83 NNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGG-IPEEIGNLTNLTIIYLGGNK-LNGSIPSTLGKLQKLQGLGLENNKL 160 (678)
Q Consensus 83 ~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~L~~n~i 160 (678)
+|++++..+.. +..++ +|++|++++|.+++. .|..|.++++|++|++++|. +....+..|.++++|++|++++|.+
T Consensus 83 ~n~l~~~~~~~-~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 83 DNHLSSLSSSW-FGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TSCCCSCCHHH-HTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCccCccCHHH-hccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99998776554 77777 899999999999974 57789999999999999998 5544457899999999999999999
Q ss_pred CCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceecccccccc
Q 005760 161 EGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTS 210 (678)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~ 210 (678)
++..|..+..+++|+.|++++|.+.......+..+++|+.|++++|+++.
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 98888888887777777777776653322223446666666666666554
No 298
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.8e-29 Score=274.65 Aligned_cols=276 Identities=26% Similarity=0.374 Sum_probs=226.1
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
|++++|++. .+|. +..+++|++|+|++|.+++..+ |.++++|++|++++|.+..++. +.++++|++|++
T Consensus 51 L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~L 119 (466)
T 1o6v_A 51 LQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-------LANLTNLTGLTL 119 (466)
T ss_dssp EECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEEC
T ss_pred EecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-------hcCCCCCCEEEC
Confidence 678899998 5674 8889999999999999997654 9999999999999999987662 789999999999
Q ss_pred ccCCCcccCChhhhhcccccccEEEcccccccccCC-------------------ccccCCCCCcEEEccCCccCCcCCh
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIP-------------------EEIGNLTNLTIIYLGGNKLNGSIPS 142 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-------------------~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (678)
++|.+.+..+ +..++ +|++|++++|.+.+... ..+.++++|+.|++++|.+++. .
T Consensus 120 ~~n~l~~~~~---~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~ 193 (466)
T 1o6v_A 120 FNNQITDIDP---LKNLT-NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--S 193 (466)
T ss_dssp CSSCCCCCGG---GTTCT-TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCCCCChH---HcCCC-CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--h
Confidence 9999987743 66676 89999999999886421 2366788999999999999854 4
Q ss_pred hhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceecccccccccccccccccccc
Q 005760 143 TLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDIL 222 (678)
Q Consensus 143 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~ 222 (678)
.+..+++|++|++++|.+++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|.++.++. +..+++|+
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 268 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLT 268 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCS
T ss_pred hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCC
Confidence 58899999999999999996544 78899999999999999964 468899999999999999998876 88999999
Q ss_pred EEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccc
Q 005760 223 YLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNF 302 (678)
Q Consensus 223 ~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l 302 (678)
.|++++|.+++..+ +..++ +|+.|+|++|++++..+ +..+++|+.|++++|++++..+ ...+..+
T Consensus 269 ~L~l~~n~l~~~~~--~~~l~----------~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 333 (466)
T 1o6v_A 269 ELKLGANQISNISP--LAGLT----------ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKL 333 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCT----------TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTC
T ss_pred EEECCCCccCcccc--ccCCC----------ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccC
Confidence 99999999986654 44444 77777777777776544 6677777777777777776554 4556667
Q ss_pred cccccccCcccc
Q 005760 303 SAESFEGNELLC 314 (678)
Q Consensus 303 ~~~~~~~n~~~c 314 (678)
+.+++.+|....
T Consensus 334 ~~L~l~~n~l~~ 345 (466)
T 1o6v_A 334 QRLFFYNNKVSD 345 (466)
T ss_dssp CEEECCSSCCCC
T ss_pred CEeECCCCccCC
Confidence 777777765543
No 299
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=276.80 Aligned_cols=254 Identities=21% Similarity=0.226 Sum_probs=229.4
Q ss_pred CCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCC
Q 005760 46 NLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTN 125 (678)
Q Consensus 46 ~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (678)
..+.++.+++.++.+|..+ .++++.|+|++|+|+.+.+.. +..++ +|++|+|++|++.+..+..|.++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n~i~~~~~~~-~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI--------STNTRLLNLHENQIQIIKVNS-FKHLR-HLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC--------CTTCSEEECCSCCCCEECTTT-TSSCS-SCCEEECCSSCCCEECGGGGTTCSS
T ss_pred CCCEEEeCCCCcCcCCCCC--------CCCCcEEEccCCcCCeeCHHH-hhCCC-CCCEEECCCCcCCccChhhccCCcc
Confidence 4678999999999988652 278999999999999887655 77787 8999999999999999999999999
Q ss_pred CcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCC-CcCCCCChhhhhccccccceecc
Q 005760 126 LTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGG-NKLSGSIPECFNNLASLRILLLG 204 (678)
Q Consensus 126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-N~i~~~~~~~~~~l~~L~~L~l~ 204 (678)
|++|+|++|+++.+.+..|.++++|++|+|++|.|+...+..|..+++|++|++++ |.+....+..|.++++|+.|+|+
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 99999999999977778899999999999999999977777899999999999999 45665566689999999999999
Q ss_pred ccccccccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceec
Q 005760 205 SNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNL 284 (678)
Q Consensus 205 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 284 (678)
+|.|+.+| .+..+++|+.|+|++|++++..+..|.+++ +|+.|+|++|+|++..+..|..+++|+.|+|
T Consensus 194 ~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 194 MCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM----------HLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp TSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT----------TCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred CCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCc----------cCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence 99999998 588999999999999999988898888877 9999999999999999999999999999999
Q ss_pred ccccccccCCCC-CccccccccccccCccccCCCCCC
Q 005760 285 SFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPNLR 320 (678)
Q Consensus 285 ~~N~~~~~~~~~-~~~~~l~~~~~~~n~~~c~~~~~~ 320 (678)
++|+++...+.. ..+..++.+++.+|||.|+|...|
T Consensus 263 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 263 AHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp TTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred CCCCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence 999999877664 667899999999999999998544
No 300
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=8.4e-30 Score=276.14 Aligned_cols=254 Identities=22% Similarity=0.226 Sum_probs=229.2
Q ss_pred CCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCC
Q 005760 46 NLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTN 125 (678)
Q Consensus 46 ~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (678)
....++.+++.++.+|..+ .++|++|+|++|+|+++.+.. +..++ +|++|+|++|++++..+..|.++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n~i~~~~~~~-~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI--------PSNTRYLNLMENNIQMIQADT-FRHLH-HLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC--------CTTCSEEECCSSCCCEECTTT-TTTCT-TCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCcEEEECCCCcCccCCCC--------CCCccEEECcCCcCceECHHH-cCCCC-CCCEEECCCCccCCcChhhccCccc
Confidence 4678999999999888542 268999999999999887765 77787 8999999999999999999999999
Q ss_pred CcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCC-CcCCCCChhhhhccccccceecc
Q 005760 126 LTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGG-NKLSGSIPECFNNLASLRILLLG 204 (678)
Q Consensus 126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-N~i~~~~~~~~~~l~~L~~L~l~ 204 (678)
|++|+|++|+++...+..|.++++|++|+|++|.|+...+..|..+++|+.|++++ |.+....+..|.++++|+.|+|+
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 99999999999988888899999999999999999977777899999999999999 55665556679999999999999
Q ss_pred ccccccccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceec
Q 005760 205 SNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNL 284 (678)
Q Consensus 205 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 284 (678)
+|.|+.+| .+..+++|+.|+|++|.+++..|..|.+++ +|+.|+|++|++++..+..|..+++|+.|+|
T Consensus 205 ~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 205 MCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS----------SLKKLWVMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp TSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT----------TCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcccccc-cccccccccEEECcCCcCcccCcccccCcc----------CCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence 99999997 588899999999999999998898888877 9999999999999999999999999999999
Q ss_pred ccccccccCCCC-CccccccccccccCccccCCCCCC
Q 005760 285 SFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPNLR 320 (678)
Q Consensus 285 ~~N~~~~~~~~~-~~~~~l~~~~~~~n~~~c~~~~~~ 320 (678)
++|+++..++.. ..+..+..+++.+|||.|+|...|
T Consensus 274 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~ 310 (452)
T 3zyi_A 274 AHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILW 310 (452)
T ss_dssp CSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHH
T ss_pred CCCcCCccChHHhccccCCCEEEccCCCcCCCCCchH
Confidence 999999777654 567889999999999999998554
No 301
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.8e-29 Score=270.16 Aligned_cols=280 Identities=19% Similarity=0.168 Sum_probs=214.1
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
.|++++|++++ +| .+..+++|++|+|++|+|+++ + |+.+++|++|++++|.++.++ +.++++|++|+
T Consensus 46 ~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--------~~~l~~L~~L~ 112 (457)
T 3bz5_A 46 SLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--------VTPLTKLTYLN 112 (457)
T ss_dssp EEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--------CTTCTTCCEEE
T ss_pred EEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee--------cCCCCcCCEEE
Confidence 37899999995 46 689999999999999999975 3 899999999999999998763 67899999999
Q ss_pred CccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcC
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKL 160 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i 160 (678)
+++|+++++ + +..++ +|++|++++|++++. + ++.+++|++|++++|+..+.. .+..+++|++|++++|++
T Consensus 113 L~~N~l~~l-~---~~~l~-~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 113 CDTNKLTKL-D---VSQNP-LLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CCSSCCSCC-C---CTTCT-TCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred CCCCcCCee-c---CCCCC-cCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 999999875 3 56666 899999999999985 3 788999999999999554444 478889999999999999
Q ss_pred CCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCcccc
Q 005760 161 EGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIG 240 (678)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 240 (678)
++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|+++.+| +..+++|+.|++++|++++..+..+.
T Consensus 183 ~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 183 TE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp CC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred ce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 95 44 78889999999999999965 3888899999999999999987 78889999999999999987766666
Q ss_pred ccccc-------------------cccccCcccccEEEccCCcCCCcchH--------HHhcccCCCceecccccccccC
Q 005760 241 NLKIA-------------------RIDSCDLISLISLNLSNNNLSGAIPA--------SLEKLSYLKDLNLSFNKLEGEI 293 (678)
Q Consensus 241 ~l~~~-------------------~~~~~~~~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~l~~N~~~~~~ 293 (678)
.++.. .++.+.+++|+.|+|++|...+..|. .+..+++|+.|++++|.+++.
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l- 333 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL- 333 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-
T ss_pred CCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-
Confidence 55421 12223445666666666654433332 133445666666666666653
Q ss_pred CCCCccccccccccccCccc
Q 005760 294 PRGGSFGNFSAESFEGNELL 313 (678)
Q Consensus 294 ~~~~~~~~l~~~~~~~n~~~ 313 (678)
....++.++.+++.+|...
T Consensus 334 -~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 334 -DVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp -CCTTCTTCSEEECCSSCCC
T ss_pred -ccccCCcCcEEECCCCCCC
Confidence 2445556666666666543
No 302
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=4.8e-31 Score=271.84 Aligned_cols=262 Identities=21% Similarity=0.224 Sum_probs=216.9
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
++++.+++....+..+..+++|++|+|++|+|++..|++|.++++|++|+|++|.+...+ .|..+++|++|+|
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~L 87 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLRTLDL 87 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------EETTCTTCCEEEC
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------hhhhcCCCCEEEC
Confidence 466777777555565666789999999999999888889999999999999999997544 2788999999999
Q ss_pred ccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCC
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLE 161 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~ 161 (678)
++|+++++.+. .+|++|++++|++++..+.. +++|++|++++|++++..+..|..+++|++|+|++|.++
T Consensus 88 s~n~l~~l~~~-------~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 88 NNNYVQELLVG-------PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CSSEEEEEEEC-------TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred cCCccccccCC-------CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 99999865432 38999999999998776543 678999999999999877778999999999999999998
Q ss_pred CCCCCccc-CCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCcccc
Q 005760 162 GSIPDSIC-HSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIG 240 (678)
Q Consensus 162 ~~~~~~~~-~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 240 (678)
+..+..+. .+++|++|+|++|.+++. + ....+++|++|+|++|+|+.+|..+..+++|+.|+|++|+++ .+|..+.
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred cccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhh
Confidence 76666664 789999999999999855 3 234588999999999999999888999999999999999998 4565666
Q ss_pred ccccccccccCcccccEEEccCCcCC-CcchHHHhcccCCCceeccccc-ccccC
Q 005760 241 NLKIARIDSCDLISLISLNLSNNNLS-GAIPASLEKLSYLKDLNLSFNK-LEGEI 293 (678)
Q Consensus 241 ~l~~~~~~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~-~~~~~ 293 (678)
.++ +|+.|+|++|+++ +..+..+..+++|+.|++++|+ +++..
T Consensus 235 ~l~----------~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 235 FSQ----------NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CCT----------TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred cCC----------CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 655 9999999999998 7788888999999999998554 45433
No 303
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=4.6e-31 Score=287.68 Aligned_cols=244 Identities=21% Similarity=0.225 Sum_probs=177.5
Q ss_pred cCCccccCCC----CCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCc
Q 005760 12 TIPRFIFNAS----KLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLD 87 (678)
Q Consensus 12 ~~p~~~~~l~----~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~ 87 (678)
.+|..+..+. +|++|+|++|.|++..|++|.++++|++|+|++|.++..+ .|..+++|++|+|++|.++
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-------ECTTCTTCCEEECCSSEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-------ccccCCCCCEEEecCCcCC
Confidence 3445555544 8999999999999888889999999999999999887544 2778889999999999887
Q ss_pred ccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCc
Q 005760 88 GILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDS 167 (678)
Q Consensus 88 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 167 (678)
++.+. .+|++|++++|.+++..+. .+++|+.|+|++|.+++..|..|+.+++|++|+|++|.|++..|..
T Consensus 94 ~l~~~-------~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 94 ELLVG-------PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp EEEEC-------TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CCCCC-------CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 65432 2788888888888766543 3567778888888887776777777777888888888777666666
Q ss_pred cc-CCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCcccccccccc
Q 005760 168 IC-HSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIAR 246 (678)
Q Consensus 168 ~~-~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~ 246 (678)
+. .+++|++|+|++|.|++.. .+..+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.+++ +|..+..++
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~--- 237 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ--- 237 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT---
T ss_pred HhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCC---
Confidence 65 6777777777777777542 2335777777777777777777777777777777777777774 444454444
Q ss_pred ccccCcccccEEEccCCcCC-CcchHHHhcccCCCceecc
Q 005760 247 IDSCDLISLISLNLSNNNLS-GAIPASLEKLSYLKDLNLS 285 (678)
Q Consensus 247 ~~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~ 285 (678)
+|+.|+|++|.++ +..|..+..++.|+.++++
T Consensus 238 -------~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 238 -------NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -------TCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -------CCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 7777777777776 5556666666666666665
No 304
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.1e-29 Score=255.56 Aligned_cols=252 Identities=22% Similarity=0.279 Sum_probs=185.0
Q ss_pred CEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccccccc
Q 005760 24 SILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLE 103 (678)
Q Consensus 24 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~ 103 (678)
+.++++++.++. +|..+ .++|++|+|++|.++.++.. .|..+++|++|+|++|.++++.+.. +..++ +|+
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~-~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAA-----SFRACRNLTILWLHSNVLARIDAAA-FTGLA-LLE 83 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCEECTTT-TTTCT-TCC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHH-----HcccCCCCCEEECCCCccceeCHhh-cCCcc-CCC
Confidence 566677776663 34333 35677777777777665533 3666677777777777776655543 55555 677
Q ss_pred EEEccccc-ccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCC
Q 005760 104 YFEMAYCN-VSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGN 182 (678)
Q Consensus 104 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N 182 (678)
+|++++|. +....+..|..+++|++|++++|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 77777776 66666777888888888888888888777788888888888888888888666667888888888888888
Q ss_pred cCCCCChhhhhccccccceeccccccccc-cccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEcc
Q 005760 183 KLSGSIPECFNNLASLRILLLGSNELTSI-PLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLS 261 (678)
Q Consensus 183 ~i~~~~~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~ 261 (678)
.+++..+..|..+++|+.|+|++|.++.+ |..+..+++|+.|++++|.+++..+..+..++ +|+.|+|+
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------~L~~L~l~ 233 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR----------ALQYLRLN 233 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT----------TCCEEECC
T ss_pred cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc----------ccCEEecc
Confidence 88877677788888888888888888877 55788888888888888888876666676666 88999999
Q ss_pred CCcCCCcchHHHhcccCCCceecccccccccCCCC
Q 005760 262 NNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG 296 (678)
Q Consensus 262 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 296 (678)
+|+++...+. ..-+..++.+..+.|.+.|..|..
T Consensus 234 ~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 234 DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp SSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGG
T ss_pred CCCccCCCCc-HHHHHHHHhcccccCccccCCchH
Confidence 9988743332 112234556667888888887764
No 305
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.2e-29 Score=256.23 Aligned_cols=251 Identities=20% Similarity=0.262 Sum_probs=221.5
Q ss_pred CCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEccccccccc--CCccccCCC
Q 005760 47 LQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGG--IPEEIGNLT 124 (678)
Q Consensus 47 L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~--~~~~~~~l~ 124 (678)
-+.++++++.++.+|... .++|++|+|++|+++.+. ...+..++ +|++|+|++|.++.. .+..+..++
T Consensus 9 ~~~l~c~~~~l~~ip~~~--------~~~l~~L~L~~n~l~~i~-~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI--------PSSATRLELESNKLQSLP-HGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTT 78 (306)
T ss_dssp TTEEECCSSCCSSCCSCC--------CTTCCEEECCSSCCCCCC-TTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred CCEEEcCCCCcccCCCCC--------CCCCCEEECCCCccCccC-HhHhhccc-cCCEEECCCCccCcccCccccccccc
Confidence 368999999999888542 268999999999998554 44467777 899999999999844 367788899
Q ss_pred CCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCC-CcccCCCCccEEecCCCcCCCCChhhhhccccccceec
Q 005760 125 NLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIP-DSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLL 203 (678)
Q Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l 203 (678)
+|++|+|++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+|
T Consensus 79 ~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 9999999999998 567779999999999999999996554 58999999999999999999888999999999999999
Q ss_pred ccccccc--ccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCc
Q 005760 204 GSNELTS--IPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKD 281 (678)
Q Consensus 204 ~~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 281 (678)
++|.++. +|..+..+++|+.|++++|.+++..|..|.+++ +|+.|+|++|++++..+..+..+++|+.
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS----------SLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----------TCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC----------CCCEEECCCCccCccChhhccCcccCCE
Confidence 9999986 688899999999999999999988888887777 9999999999999888888999999999
Q ss_pred eecccccccccCCCC-Ccc-ccccccccccCccccCCCC
Q 005760 282 LNLSFNKLEGEIPRG-GSF-GNFSAESFEGNELLCGSPN 318 (678)
Q Consensus 282 L~l~~N~~~~~~~~~-~~~-~~l~~~~~~~n~~~c~~~~ 318 (678)
|++++|++++..+.. ..+ ..+..+++.+|++.|+|+.
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 999999999877654 455 4899999999999999874
No 306
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=6.5e-30 Score=278.64 Aligned_cols=247 Identities=20% Similarity=0.143 Sum_probs=209.1
Q ss_pred cCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCcccc
Q 005760 42 GNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIG 121 (678)
Q Consensus 42 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~ 121 (678)
...++|+.|+|++|.++.+++. .|..+++|++|+|++|.+++..+ +..++ +|++|+|++|.+++..
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~-~L~~L~Ls~N~l~~l~----- 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAA-----DLAPFTKLELLNLSSNVLYETLD---LESLS-TLRTLDLNNNYVQELL----- 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGG-----GGTTCTTCCEEECTTSCCEEEEE---CTTCT-TCCEEECCSSEEEEEE-----
T ss_pred ccCCCccEEEeeCCcCCCCCHH-----HHhCCCCCCEEEeeCCCCCCCcc---cccCC-CCCEEEecCCcCCCCC-----
Confidence 3445999999999999987754 58999999999999999987765 66666 8999999999998654
Q ss_pred CCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhh-ccccccc
Q 005760 122 NLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFN-NLASLRI 200 (678)
Q Consensus 122 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~-~l~~L~~ 200 (678)
..++|+.|++++|.+++..+. .+++|++|+|++|.+++..|..+..+++|++|+|++|.+++..|..+. .+++|+.
T Consensus 97 ~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 348999999999999976554 458999999999999988888999999999999999999988888886 7999999
Q ss_pred eeccccccccccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCC
Q 005760 201 LLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLK 280 (678)
Q Consensus 201 L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 280 (678)
|+|++|.|+.++.. ..+++|+.|+|++|.+++..+. +..++ +|+.|+|++|+|++ +|..+..+++|+
T Consensus 174 L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~l~----------~L~~L~Ls~N~l~~-lp~~l~~l~~L~ 240 (487)
T 3oja_A 174 LNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA----------GVTWISLRNNKLVL-IEKALRFSQNLE 240 (487)
T ss_dssp EECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT----------TCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred EecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHh-HcCCC----------CccEEEecCCcCcc-cchhhccCCCCC
Confidence 99999999998653 4589999999999999975554 66666 99999999999995 677788999999
Q ss_pred ceecccccccccCCC--CCccccccccccc-------cCccccCCCC
Q 005760 281 DLNLSFNKLEGEIPR--GGSFGNFSAESFE-------GNELLCGSPN 318 (678)
Q Consensus 281 ~L~l~~N~~~~~~~~--~~~~~~l~~~~~~-------~n~~~c~~~~ 318 (678)
.|++++|++.|.... ...++.+..+++. ++++.|.++.
T Consensus 241 ~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp EEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred EEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 999999999965432 2455666666665 7888888764
No 307
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.4e-28 Score=250.54 Aligned_cols=234 Identities=21% Similarity=0.259 Sum_probs=136.1
Q ss_pred CCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccc
Q 005760 20 ASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLS 99 (678)
Q Consensus 20 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 99 (678)
..+++.|+|++|+++ .+|..+.++++|++|+|++|.+..++. .|.++++|++|+|++|+++ ..|.. +..++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~------~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPD------TMQQFAGLETLTLARNPLR-ALPAS-IASLN 150 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCS------CGGGGTTCSEEEEESCCCC-CCCGG-GGGCT
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhH------HHhccCCCCEEECCCCccc-cCcHH-HhcCc
Confidence 467888888888888 567777778888888888888875553 3677788888888888776 33433 44554
Q ss_pred ccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEec
Q 005760 100 HSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLEL 179 (678)
Q Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 179 (678)
+|++|+|++|++.+.+|..+... ..++.|.++++|++|+|++|.++ .+|..+..+++|++|+|
T Consensus 151 -~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 151 -RLRELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213 (328)
T ss_dssp -TCCEEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred -CCCEEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence 56666666666655555544320 00011223455555555555555 44444555555555555
Q ss_pred CCCcCCCCChhhhhccccccceeccccccc-cccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEE
Q 005760 180 GGNKLSGSIPECFNNLASLRILLLGSNELT-SIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISL 258 (678)
Q Consensus 180 ~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L 258 (678)
++|.+++ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|++.+..|..+.+++ +|+.|
T Consensus 214 ~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~----------~L~~L 282 (328)
T 4fcg_A 214 RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT----------QLEKL 282 (328)
T ss_dssp ESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT----------TCCEE
T ss_pred cCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC----------CCCEE
Confidence 5555552 3334555555555555554433 3344555555555555555555555555555444 66666
Q ss_pred EccCCcCCCcchHHHhcccCCCceeccccccc
Q 005760 259 NLSNNNLSGAIPASLEKLSYLKDLNLSFNKLE 290 (678)
Q Consensus 259 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 290 (678)
+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66666655566666666666666666555443
No 308
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.9e-28 Score=249.05 Aligned_cols=230 Identities=22% Similarity=0.315 Sum_probs=167.9
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
.|+|++|+++ .+|..++.+++|++|+|++|.++ .+|..|+++++|++|+|++|.++.++. .|.++++|++|+
T Consensus 85 ~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~------~l~~l~~L~~L~ 156 (328)
T 4fcg_A 85 ALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPA------SIASLNRLRELS 156 (328)
T ss_dssp EEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCG------GGGGCTTCCEEE
T ss_pred EEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcH------HHhcCcCCCEEE
Confidence 3789999999 88999999999999999999999 889999999999999999999997653 478999999999
Q ss_pred CccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcC
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKL 160 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i 160 (678)
|++|++.+..|.. +.. . ..+..|.++++|++|+|++|+++ .+|..+..+++|++|+|++|.+
T Consensus 157 L~~n~~~~~~p~~-~~~-------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 157 IRACPELTELPEP-LAS-------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEETTCCCCCSC-SEE-------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred CCCCCCccccChh-Hhh-------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 9999888777754 221 1 11233556666666666666666 5566666666666666666666
Q ss_pred CCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccc-cccccccccccccEEEecCCcccCCCCccc
Q 005760 161 EGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELT-SIPLTFWNLKDILYLNFSSNFFTGPLPLEI 239 (678)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 239 (678)
+ .+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|++.+.+|..+
T Consensus 219 ~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp C-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred C-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 6 34455666666666666666666666666666666666666665433 456666666677777777766666666666
Q ss_pred cccccccccccCcccccEEEccCCcCCC
Q 005760 240 GNLKIARIDSCDLISLISLNLSNNNLSG 267 (678)
Q Consensus 240 ~~l~~~~~~~~~~~~L~~L~L~~N~l~~ 267 (678)
..++ +|+.+++..|.+..
T Consensus 298 ~~L~----------~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 298 AQLP----------ANCIILVPPHLQAQ 315 (328)
T ss_dssp GGSC----------TTCEEECCGGGSCC
T ss_pred hhcc----------CceEEeCCHHHHHH
Confidence 6665 67777766666553
No 309
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2e-27 Score=256.71 Aligned_cols=262 Identities=20% Similarity=0.203 Sum_probs=221.4
Q ss_pred cCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCc
Q 005760 8 NFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLD 87 (678)
Q Consensus 8 ~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~ 87 (678)
+.....+..+..+++|++|+|++|.|++. | .|..+++|++|+|++|.++.++ +..+++|++|++++|+++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--------~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--------LSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCS
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--------cccCCCCCEEECcCCCCc
Confidence 34445566788899999999999999975 5 7999999999999999999864 678999999999999998
Q ss_pred ccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCc
Q 005760 88 GILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDS 167 (678)
Q Consensus 88 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 167 (678)
++ + +..++ +|++|++++|++++. + ++.+++|++|++++|++++. + ++.+++|++|++++|...+.+ .
T Consensus 99 ~~-~---~~~l~-~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 99 NL-D---VTPLT-KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp CC-C---CTTCT-TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--C
T ss_pred ee-e---cCCCC-cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--c
Confidence 76 2 66676 899999999999985 4 89999999999999999964 3 889999999999999655455 5
Q ss_pred ccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccccccc
Q 005760 168 ICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARI 247 (678)
Q Consensus 168 ~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~ 247 (678)
+..+++|+.|++++|.+++. | +..+++|+.|++++|+++.++ +..+++|+.|++++|++++ +| +..++
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~---- 233 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLT---- 233 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCT----
T ss_pred cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccC----
Confidence 88899999999999999974 4 889999999999999999884 8889999999999999997 34 55555
Q ss_pred cccCcccccEEEccCCcCCCcchHHHhccc-------CCCceecccccccccCCCCCccccccccccccCc
Q 005760 248 DSCDLISLISLNLSNNNLSGAIPASLEKLS-------YLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNE 311 (678)
Q Consensus 248 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~ 311 (678)
+|+.|++++|++++..+..+..+. +|+.|++++|++.+..|. ..+..++.+++.+|+
T Consensus 234 ------~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 234 ------QLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EGCRKIKELDVTHNT 297 (457)
T ss_dssp ------TCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TTCTTCCCCCCTTCT
T ss_pred ------CCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc-cccccCCEEECCCCc
Confidence 999999999999987665555554 567777777777766663 456788888888876
No 310
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.6e-29 Score=258.87 Aligned_cols=260 Identities=19% Similarity=0.144 Sum_probs=219.1
Q ss_pred CCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccc
Q 005760 21 SKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSH 100 (678)
Q Consensus 21 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 100 (678)
.+++.++++.+.+.......+..+++|++|+|++|.++.++.. .|.++++|++|+|++|.+++..+ +..++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~- 80 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-----DLAPFTKLELLNLSSNVLYETLD---LESLS- 80 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH-----HHTTCTTCCEEECTTSCCEEEEE---ETTCT-
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH-----HhhCCCcCCEEECCCCcCCcchh---hhhcC-
Confidence 4577788899999877778888899999999999999987754 58899999999999999987654 56666
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
+|++|++++|++++.. ..++|++|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|+++
T Consensus 81 ~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 81 TLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp TCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred CCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 8999999999998643 4599999999999998665543 6889999999999997778889999999999999
Q ss_pred CCcCCCCChhhh-hccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEE
Q 005760 181 GNKLSGSIPECF-NNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLN 259 (678)
Q Consensus 181 ~N~i~~~~~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~ 259 (678)
+|.+++..+..+ ..+++|++|+|++|.|+.++.. ..+++|+.|+|++|++++..+ .+..++ +|+.|+
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~-~~~~l~----------~L~~L~ 220 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGP-EFQSAA----------GVTWIS 220 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECG-GGGGGT----------TCSEEE
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchh-hhcccC----------cccEEE
Confidence 999998777777 4789999999999999998653 358999999999999996544 466666 999999
Q ss_pred ccCCcCCCcchHHHhcccCCCceecccccccccCCCC--CccccccccccccC
Q 005760 260 LSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG--GSFGNFSAESFEGN 310 (678)
Q Consensus 260 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~--~~~~~l~~~~~~~n 310 (678)
|++|+|+ .+|..+..+++|+.|++++|++.|..... ..++.+..+++.++
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 9999999 56777899999999999999999654332 45566777776643
No 311
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.4e-30 Score=261.92 Aligned_cols=197 Identities=21% Similarity=0.249 Sum_probs=85.4
Q ss_pred cccEEEcccccccccCCccc--cCCCCCcEEEccCCccCCcCChhhhcc-----CCCCEEEccCCcCCCCCCCcccCCCC
Q 005760 101 SLEYFEMAYCNVSGGIPEEI--GNLTNLTIIYLGGNKLNGSIPSTLGKL-----QKLQGLGLENNKLEGSIPDSICHSDE 173 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~ 173 (678)
+|++|+|++|++++..|..+ ..+++|++|+|++|++++. |..+..+ ++|++|+|++|+|++..|..|..+++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 44444444444444444433 4444444444444444433 4444443 44444444444444444444444444
Q ss_pred ccEEecCCCcCCCC--Chhhh--hccccccceecccccccccc---c-cccccccccEEEecCCcccCCCC-cccccccc
Q 005760 174 LYKLELGGNKLSGS--IPECF--NNLASLRILLLGSNELTSIP---L-TFWNLKDILYLNFSSNFFTGPLP-LEIGNLKI 244 (678)
Q Consensus 174 L~~L~l~~N~i~~~--~~~~~--~~l~~L~~L~l~~N~l~~l~---~-~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~ 244 (678)
|++|++++|.+.+. .+..+ ..+++|++|+|++|+|+.++ . .+..+++|+.|+|++|++++..| ..+..++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~- 253 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS- 253 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT-
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC-
Confidence 44444444444322 11222 44444444444444444222 1 12334444444554444444332 1222222
Q ss_pred ccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccccccccccCcc
Q 005760 245 ARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL 312 (678)
Q Consensus 245 ~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~ 312 (678)
+|+.|+|++|+|+ .+|..+. ++|+.|++++|++++. |....++.++.+++.+|++
T Consensus 254 ---------~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 254 ---------QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp ---------TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred ---------CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 4444455444444 2232222 3444444444444443 2234444444444444443
No 312
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.6e-29 Score=255.24 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=205.4
Q ss_pred cccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhc---ccccCCCCCcEEECccCCCcccCCh
Q 005760 16 FIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFL---SSLSNCKSLTLISFSNNPLDGILPK 92 (678)
Q Consensus 16 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---~~~~~l~~L~~L~L~~n~i~~~~~~ 92 (678)
.+...++|++|++++|.+ .+|..+... |+.|+|++|.+.......... -.+.++++|++|+|++|++++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345577899999999999 567766654 999999999996543221000 0122689999999999999988887
Q ss_pred hhh-hcccccccEEEcccccccccCCccccCC-----CCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCC--C
Q 005760 93 TSV-GNLSHSLEYFEMAYCNVSGGIPEEIGNL-----TNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGS--I 164 (678)
Q Consensus 93 ~~~-~~l~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~ 164 (678)
..+ ..++ +|++|+|++|++++. |..+..+ ++|++|+|++|++++..+..|+.+++|++|+|++|++.+. .
T Consensus 114 ~~~~~~l~-~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 114 PLLEATGP-DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CSSSCCSC-CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHhcCC-CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 643 5666 899999999999988 8888877 9999999999999988889999999999999999998643 2
Q ss_pred CCcc--cCCCCccEEecCCCcCCCC---Chhhhhccccccceecccccccccc--ccccccccccEEEecCCcccCCCCc
Q 005760 165 PDSI--CHSDELYKLELGGNKLSGS---IPECFNNLASLRILLLGSNELTSIP--LTFWNLKDILYLNFSSNFFTGPLPL 237 (678)
Q Consensus 165 ~~~~--~~l~~L~~L~l~~N~i~~~---~~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~l~~L~~L~l~~N~l~~~~~~ 237 (678)
+..+ ..+++|++|+|++|.+++. ....+..+++|+.|+|++|+++..+ ..+..+++|+.|+|++|.++ .+|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 3333 7899999999999999832 2244567899999999999999765 35677899999999999998 5565
Q ss_pred cccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccc
Q 005760 238 EIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEG 291 (678)
Q Consensus 238 ~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 291 (678)
.+. + +|+.|+|++|+|++. |. +..+++|+.|++++|++++
T Consensus 271 ~~~--~----------~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 271 GLP--A----------KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCC--S----------EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcc--C----------CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 554 4 899999999999976 55 8899999999999999985
No 313
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=5e-29 Score=275.30 Aligned_cols=186 Identities=20% Similarity=0.124 Sum_probs=131.6
Q ss_pred cccCCCceeEEEEE-eCCCcEEEEEEeeccc----------CchhhhHHHHHHHHHhC-CCccceeeeeeeecCCeEEEE
Q 005760 399 LIGRGSFGSVFKAR-LGDGMEVAMKVFNLQY----------GRVFKSFDVECEMMKSI-RHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 399 ~ig~G~~g~V~~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv 466 (678)
..+.|+.|.+..++ .-.|+.+|+|++.... ....+++.+|+++|+++ .|+||+++++++++.+..|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 34566666666553 3368899999996542 12346689999999999 699999999999999999999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||++|++|.+++...+. ++.. +|+.||+.||+|+| ++|||||||||+|||++.+|.+||+|||+|+......
T Consensus 321 MEyv~G~~L~d~i~~~~~-l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~ 393 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAGEE-IDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC 393 (569)
T ss_dssp EECCCSEEHHHHHHTTCC-CCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---
T ss_pred EecCCCCcHHHHHHhCCC-CCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC
Confidence 999999999999987653 5554 48899999999999 9999999999999999999999999999998764322
Q ss_pred CcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCC
Q 005760 547 QSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPT 594 (678)
Q Consensus 547 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~ 594 (678)
......+||+.|+|||.+.+ .+..++|+||+|++++++.++..|+
T Consensus 394 --~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~ 438 (569)
T 4azs_A 394 --SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW 438 (569)
T ss_dssp --CCSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred --ccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence 22345679999999999865 5677899999999998887765543
No 314
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.1e-26 Score=232.28 Aligned_cols=228 Identities=24% Similarity=0.247 Sum_probs=165.7
Q ss_pred EEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccccE
Q 005760 25 ILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEY 104 (678)
Q Consensus 25 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~ 104 (678)
..+..+.+++ .+|..+. ++|++|+|++|.++.++.. .|.++++|++|++++|+++
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~----------------- 65 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSY-----SFFSFPELQVLDLSRCEIQ----------------- 65 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTT-----TTTTCTTCSEEECTTCCCC-----------------
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHh-----HhccccCCcEEECCCCcCC-----------------
Confidence 3455555555 3344332 3566666666666554432 3455555555555555554
Q ss_pred EEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcC
Q 005760 105 FEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKL 184 (678)
Q Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i 184 (678)
+..+..|.++++|++|+|++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 66 ---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 136 (276)
T 2z62_A 66 ---------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136 (276)
T ss_dssp ---------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred ---------ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcc
Confidence 44455677778888888888888777777788888888888888888866666788888888888888888
Q ss_pred CCC-Chhhhhccccccceeccccccccccc-ccccccccc----EEEecCCcccCCCCccccccccccccccCcccccEE
Q 005760 185 SGS-IPECFNNLASLRILLLGSNELTSIPL-TFWNLKDIL----YLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISL 258 (678)
Q Consensus 185 ~~~-~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~----~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L 258 (678)
++. +|..|..+++|+.|+|++|+++.++. .+..+++|+ .|++++|++++..+..+.. . +|+.|
T Consensus 137 ~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~----------~L~~L 205 (276)
T 2z62_A 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-I----------RLKEL 205 (276)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-C----------CEEEE
T ss_pred ceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-C----------cccEE
Confidence 764 47788888888888888888887754 566666666 8899999998666555432 2 79999
Q ss_pred EccCCcCCCcchHHHhcccCCCceecccccccccCCCCC
Q 005760 259 NLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGG 297 (678)
Q Consensus 259 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 297 (678)
+|++|++++..+..+..+++|+.|++++|+|.|.|+...
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 999999998888888999999999999999999998653
No 315
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.7e-26 Score=230.61 Aligned_cols=207 Identities=26% Similarity=0.319 Sum_probs=173.5
Q ss_pred CCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEE
Q 005760 75 SLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLG 154 (678)
Q Consensus 75 ~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (678)
+.+.+++++|+++.+ |. .++.++++|+|++|++++..+..|.++++|++|+|++|+++.+.+..|.++++|++|+
T Consensus 17 ~~~~l~~~~~~l~~i-p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PS----NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSC-CS----CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCcc-CC----CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 455666666666532 21 1223677777777777766677788999999999999999877777788899999999
Q ss_pred ccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccC
Q 005760 155 LENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTG 233 (678)
Q Consensus 155 L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~ 233 (678)
|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.|+.+|. .|..+++|+.|+|++|.+++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999997777788899999999999999998888889999999999999999999877 48889999999999999998
Q ss_pred CCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC
Q 005760 234 PLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG 296 (678)
Q Consensus 234 ~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 296 (678)
..+..|.+++ +|+.|+|++|++++..+..+..+++|+.|++++|+|.|+++..
T Consensus 172 ~~~~~~~~l~----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 172 VPEGAFDKLT----------ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp CCTTTTTTCT----------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred eChhHhccCC----------CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence 7777777776 9999999999999888888999999999999999999998753
No 316
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.7e-26 Score=251.93 Aligned_cols=254 Identities=26% Similarity=0.277 Sum_probs=183.4
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
.|++++|+++ .+|..++ ++|++|+|++|+|+. +|. .+++|++|+|++|+++.++. .+++|++|+
T Consensus 44 ~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---------~l~~L~~L~ 107 (622)
T 3g06_A 44 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV---------LPPGLLELS 107 (622)
T ss_dssp EEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC---------CCTTCCEEE
T ss_pred EEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC---------CCCCCCEEE
Confidence 3789999999 8887776 799999999999994 454 67899999999999987663 568999999
Q ss_pred CccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcC
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKL 160 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i 160 (678)
|++|+++++.. ...+|++|++++|+++++ |.. +++|++|+|++|++++ +|. .+++|+.|++++|.|
T Consensus 108 Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 108 IFSNPLTHLPA------LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQL 173 (622)
T ss_dssp ECSCCCCCCCC------CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred CcCCcCCCCCC------CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCC
Confidence 99999986533 224899999999998864 432 5889999999999984 443 346788888888888
Q ss_pred CCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCcccc
Q 005760 161 EGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIG 240 (678)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 240 (678)
+ .+| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.|+.+|.. +++|+.|+|++|.|++ +|.
T Consensus 174 ~-~l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp~--- 238 (622)
T 3g06_A 174 T-SLP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPV--- 238 (622)
T ss_dssp S-CCC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCC---
T ss_pred C-CCc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CCC---
Confidence 8 455 345778888888888884 3332 36777777888777777643 3677777777777774 231
Q ss_pred ccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccccccccccCccc
Q 005760 241 NLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELL 313 (678)
Q Consensus 241 ~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~~ 313 (678)
.+ ++|+.|+|++|+|+.+.+ .+++|+.|+|++|.++..++....++++..+++.+|++.
T Consensus 239 ~l----------~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 239 LP----------SELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CC----------TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CC----------CcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 12 266777777777664332 456677777777776644444455666666666666654
No 317
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=3.3e-26 Score=246.94 Aligned_cols=247 Identities=28% Similarity=0.327 Sum_probs=126.2
Q ss_pred CCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccc
Q 005760 21 SKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSH 100 (678)
Q Consensus 21 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 100 (678)
++|++|++++|++++ +| .|+++++|++|++++|+++.++.. ..+|++|++++|+++++ | .+..++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~---------~~~L~~L~L~~n~l~~l-~--~~~~l~- 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL---------PPSLEFIAAGNNQLEEL-P--ELQNLP- 195 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSSC-C--CCTTCT-
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC---------cccccEEECcCCcCCcC-c--cccCCC-
Confidence 467777777777764 44 467777777777777776655421 13555555555555542 2 133443
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
+|++|++++|++++ +|.. .++|++|++++|+++ .+| .+..+++|++|++++|++++ +|.. +++|+.|+++
T Consensus 196 ~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 265 (454)
T 1jl5_A 196 FLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVR 265 (454)
T ss_dssp TCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECC
T ss_pred CCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECC
Confidence 45555555555543 2211 134555555555554 333 24455555555555555542 2321 2344444444
Q ss_pred CCcCCCCChhhhh-----------------ccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccc
Q 005760 181 GNKLSGSIPECFN-----------------NLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLK 243 (678)
Q Consensus 181 ~N~i~~~~~~~~~-----------------~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 243 (678)
+|.+++ +|..+. -.++|+.|++++|+++.++.. .++|+.|++++|++++ +|..
T Consensus 266 ~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~----- 335 (454)
T 1jl5_A 266 DNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPAL----- 335 (454)
T ss_dssp SSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCC-----
T ss_pred CCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-cccc-----
Confidence 444443 222110 013455555555555443311 1467777777777774 3322
Q ss_pred cccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccc--cCCCC-Ccc-------------cccccccc
Q 005760 244 IARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEG--EIPRG-GSF-------------GNFSAESF 307 (678)
Q Consensus 244 ~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--~~~~~-~~~-------------~~l~~~~~ 307 (678)
+++|+.|+|++|++++ +|. .+++|+.|++++|++++ ..|.. ..+ ..++.+++
T Consensus 336 --------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 336 --------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp --------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred --------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence 2489999999999985 444 47889999999999988 44433 333 56788888
Q ss_pred ccCcccc
Q 005760 308 EGNELLC 314 (678)
Q Consensus 308 ~~n~~~c 314 (678)
.+|+...
T Consensus 404 s~N~l~~ 410 (454)
T 1jl5_A 404 ETNPLRE 410 (454)
T ss_dssp -------
T ss_pred CCCcCCc
Confidence 8888764
No 318
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.2e-26 Score=250.24 Aligned_cols=263 Identities=22% Similarity=0.218 Sum_probs=181.4
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCC-------------CEEEccCccCCCCccchhhc
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNL-------------QALRLSNNYLTSSTLELSFL 67 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L-------------~~L~l~~n~i~~~~~~~~~~ 67 (678)
.|++++|++ +.+|++++++++|++|++++|++.+..|..++++++| ++|++++|.++.++..
T Consensus 15 ~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---- 89 (454)
T 1jl5_A 15 EPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---- 89 (454)
T ss_dssp --------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC----
T ss_pred hhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC----
Confidence 478899999 6999999999999999999999999999999998875 9999999999887632
Q ss_pred ccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhcc
Q 005760 68 SSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKL 147 (678)
Q Consensus 68 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (678)
.++|++|++++|.++++ |.. ..+|++|++++|++++... . .++|++|++++|++++ +| .|+++
T Consensus 90 -----~~~L~~L~l~~n~l~~l-p~~-----~~~L~~L~l~~n~l~~l~~-~---~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 90 -----PPHLESLVASCNSLTEL-PEL-----PQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp -----CTTCSEEECCSSCCSSC-CCC-----CTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred -----cCCCCEEEccCCcCCcc-ccc-----cCCCcEEECCCCccCcccC-C---CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 36888999999888863 321 1378888888888875321 1 2688888888888875 55 58888
Q ss_pred CCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEec
Q 005760 148 QKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFS 227 (678)
Q Consensus 148 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~ 227 (678)
++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .+..+++|+.|++++|+++.+|... ++|+.|+++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~ 223 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAG 223 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECC
T ss_pred CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECc
Confidence 888888888888884 55443 478888888888885 44 5788888888888888888776533 478888888
Q ss_pred CCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCcccccccccc
Q 005760 228 SNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESF 307 (678)
Q Consensus 228 ~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~ 307 (678)
+|.+. .+| .+..++ +|+.|++++|++++. |. .+++|+.|++++|.+++. |.. ...++.+++
T Consensus 224 ~n~l~-~lp-~~~~l~----------~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-~~~--~~~L~~L~l 284 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLP----------FLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-PEL--PQSLTFLDV 284 (454)
T ss_dssp SSCCS-SCC-CCTTCT----------TCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-CCC--CTTCCEEEC
T ss_pred CCcCC-ccc-ccCCCC----------CCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-Ccc--cCcCCEEEC
Confidence 88887 444 355555 888888888888753 32 246788888888887763 322 356777777
Q ss_pred ccCccc
Q 005760 308 EGNELL 313 (678)
Q Consensus 308 ~~n~~~ 313 (678)
.+|...
T Consensus 285 s~N~l~ 290 (454)
T 1jl5_A 285 SENIFS 290 (454)
T ss_dssp CSSCCS
T ss_pred cCCccC
Confidence 776544
No 319
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=7.2e-26 Score=228.38 Aligned_cols=220 Identities=20% Similarity=0.215 Sum_probs=180.4
Q ss_pred cCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccC
Q 005760 5 WENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNN 84 (678)
Q Consensus 5 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n 84 (678)
.+.++. .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.++.++.. .|.++++|++|+|++|
T Consensus 15 ~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 15 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-----AYQSLSHLSTLILTGN 86 (276)
T ss_dssp TTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT-----TTTTCTTCCEEECTTC
T ss_pred cCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH-----HccCCcCCCEEECCCC
Confidence 444555 6776554 5899999999999988888999999999999999999877643 4788888888888888
Q ss_pred CCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCC-
Q 005760 85 PLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGS- 163 (678)
Q Consensus 85 ~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~- 163 (678)
++++.. +..|.++++|++|++++|++.+..+..+..+++|++|+|++|.+++.
T Consensus 87 ~l~~~~--------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 140 (276)
T 2z62_A 87 PIQSLA--------------------------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140 (276)
T ss_dssp CCCEEC--------------------------TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC
T ss_pred ccCccC--------------------------hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec
Confidence 876443 34567788888888888888866666788888888888888888753
Q ss_pred CCCcccCCCCccEEecCCCcCCCCChhhhhcccccc----ceeccccccccccccccccccccEEEecCCcccCCCCccc
Q 005760 164 IPDSICHSDELYKLELGGNKLSGSIPECFNNLASLR----ILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEI 239 (678)
Q Consensus 164 ~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~----~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 239 (678)
+|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.++.++.......+|+.|++++|.+++..+..|
T Consensus 141 l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTT
T ss_pred CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHh
Confidence 578888888999999999998887777888777777 8899999999988766666689999999999997777667
Q ss_pred cccccccccccCcccccEEEccCCcCCCc
Q 005760 240 GNLKIARIDSCDLISLISLNLSNNNLSGA 268 (678)
Q Consensus 240 ~~l~~~~~~~~~~~~L~~L~L~~N~l~~~ 268 (678)
.+++ +|+.|+|++|+++..
T Consensus 221 ~~l~----------~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 221 DRLT----------SLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTCC----------SCCEEECCSSCBCCC
T ss_pred cccc----------cccEEEccCCccccc
Confidence 7666 999999999999854
No 320
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=5e-26 Score=230.69 Aligned_cols=206 Identities=22% Similarity=0.176 Sum_probs=157.0
Q ss_pred cCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCC
Q 005760 71 SNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKL 150 (678)
Q Consensus 71 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (678)
.++++++.+++++|.++.+.+ .++..++.|+|++|.+++..+..|.++++|+.|+|++|.+++..+. ..+++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~-----~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCS-----CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccCCccEEECCCCCCCcCCC-----CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 344455555555555443211 1123566666666666666667788888888888888888754332 678889
Q ss_pred CEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCC
Q 005760 151 QGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSN 229 (678)
Q Consensus 151 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N 229 (678)
++|+|++|+|+ .+|..+..+++|++|++++|+|++..+..|..+++|+.|+|++|+|+.+|. .|..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999888 677788888899999999999987777888888899999999999888876 4778889999999999
Q ss_pred cccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCC
Q 005760 230 FFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPR 295 (678)
Q Consensus 230 ~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 295 (678)
++++..+..|.+++ +|+.|+|++|+|+ .+|..+..+++|+.|++++|+|.|.|..
T Consensus 159 ~l~~l~~~~~~~l~----------~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 159 NLTELPAGLLNGLE----------NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCSCCCTTTTTTCT----------TCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCCccCHHHhcCcC----------CCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 98877666677666 8999999999998 5566666778899999999999988754
No 321
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1.8e-28 Score=266.68 Aligned_cols=304 Identities=18% Similarity=0.183 Sum_probs=173.0
Q ss_pred ccccCCcCcc----cCCccccCCCCCCEEecCCCcccccCCccc-cCCC----CCCEEEccCccCCCCccchhhcccccC
Q 005760 2 LQMWENNFSG----TIPRFIFNASKLSILELSDNSFSGFIPNTF-GNLR----NLQALRLSNNYLTSSTLELSFLSSLSN 72 (678)
Q Consensus 2 L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~l~----~L~~L~l~~n~i~~~~~~~~~~~~~~~ 72 (678)
|+|++|++.+ .+|..+..+++|++|+|++|.++...+..+ ..++ +|++|+|++|.++..... .++..|..
T Consensus 33 L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~ 111 (461)
T 1z7x_W 33 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG-VLSSTLRT 111 (461)
T ss_dssp EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH-HHHHHTTS
T ss_pred EEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH-HHHHHHcc
Confidence 5566666653 345555666666666666666654333222 2233 566777776666543311 12345666
Q ss_pred CCCCcEEECccCCCcccCChhhhhccc---ccccEEEcccccccccC----CccccCCCCCcEEEccCCccCCcCChhhh
Q 005760 73 CKSLTLISFSNNPLDGILPKTSVGNLS---HSLEYFEMAYCNVSGGI----PEEIGNLTNLTIIYLGGNKLNGSIPSTLG 145 (678)
Q Consensus 73 l~~L~~L~L~~n~i~~~~~~~~~~~l~---~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (678)
+++|++|+|++|.+++..+......+. .+|++|++++|++++.. +..+..+++|++|++++|.+.+..+..+.
T Consensus 112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 191 (461)
T 1z7x_W 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence 677777777777765443333222211 14777777777766533 44555567777777777776544333333
Q ss_pred -----ccCCCCEEEccCCcCCCC----CCCcccCCCCccEEecCCCcCCCCChh-----hhhccccccceecccccccc-
Q 005760 146 -----KLQKLQGLGLENNKLEGS----IPDSICHSDELYKLELGGNKLSGSIPE-----CFNNLASLRILLLGSNELTS- 210 (678)
Q Consensus 146 -----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~N~i~~~~~~-----~~~~l~~L~~L~l~~N~l~~- 210 (678)
.+++|++|+|++|.+++. ++..+..+++|++|++++|.+++.... .+..+++|++|+|++|.++.
T Consensus 192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~ 271 (461)
T 1z7x_W 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271 (461)
T ss_dssp HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH
Confidence 245777777777777642 345566667777777777776643221 12246677777777777775
Q ss_pred ----ccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCc----chHHHhcccCCCce
Q 005760 211 ----IPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGA----IPASLEKLSYLKDL 282 (678)
Q Consensus 211 ----l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L 282 (678)
++..+..+++|+.|++++|.+.+..+..+... .....++|+.|+|++|.+++. .+..+..+++|+.|
T Consensus 272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-----l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET-----LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH-----HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH-----hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 55566667777777777777654443333221 001123677777777777654 34455566777777
Q ss_pred ecccccccccCCCC-C-----ccccccccccccCc
Q 005760 283 NLSFNKLEGEIPRG-G-----SFGNFSAESFEGNE 311 (678)
Q Consensus 283 ~l~~N~~~~~~~~~-~-----~~~~l~~~~~~~n~ 311 (678)
++++|+++...+.. . ....++.+++.+|.
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 77777765432211 0 13456666666654
No 322
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=4.2e-28 Score=263.81 Aligned_cols=301 Identities=19% Similarity=0.164 Sum_probs=209.5
Q ss_pred CccccCCcCcccCCccccC-CC----CCCEEecCCCcccc----cCCccccCCCCCCEEEccCccCCCCccchhhccc-c
Q 005760 1 MLQMWENNFSGTIPRFIFN-AS----KLSILELSDNSFSG----FIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSS-L 70 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~-l~----~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~ 70 (678)
.|+|++|.+.+..+..+.. ++ +|++|+|++|+|+. .++.+|.++++|++|+|++|.++..... .+... +
T Consensus 60 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~ 138 (461)
T 1z7x_W 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ-LLCEGLL 138 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH-HHHHHHT
T ss_pred EEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH-HHHHHHh
Confidence 3788999988765544443 55 69999999999984 4588889999999999999988754322 11111 2
Q ss_pred cCCCCCcEEECccCCCcccCChh---hhhcccccccEEEcccccccccCCcccc-----CCCCCcEEEccCCccCCc---
Q 005760 71 SNCKSLTLISFSNNPLDGILPKT---SVGNLSHSLEYFEMAYCNVSGGIPEEIG-----NLTNLTIIYLGGNKLNGS--- 139 (678)
Q Consensus 71 ~~l~~L~~L~L~~n~i~~~~~~~---~~~~l~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~--- 139 (678)
..+++|++|+|++|++++..... .+..++ +|++|++++|.+.+..+..+. ..++|++|++++|.+++.
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCC-CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 34668999999999887644222 123334 789999999988765544443 356889999999988753
Q ss_pred -CChhhhccCCCCEEEccCCcCCCCC-----CCcccCCCCccEEecCCCcCCCC----Chhhhhccccccceeccccccc
Q 005760 140 -IPSTLGKLQKLQGLGLENNKLEGSI-----PDSICHSDELYKLELGGNKLSGS----IPECFNNLASLRILLLGSNELT 209 (678)
Q Consensus 140 -~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~l~~N~i~~~----~~~~~~~l~~L~~L~l~~N~l~ 209 (678)
++..+..+++|++|+|++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|+|++|.++
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 3666777888999999998887422 22233578888999999888853 5666777888889999888887
Q ss_pred cccc-ccc-----ccccccEEEecCCcccCCCC----ccccccccccccccCcccccEEEccCCcCCCcchHHHhc----
Q 005760 210 SIPL-TFW-----NLKDILYLNFSSNFFTGPLP----LEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEK---- 275 (678)
Q Consensus 210 ~l~~-~~~-----~l~~L~~L~l~~N~l~~~~~----~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~---- 275 (678)
.... .+. ..++|+.|++++|.+++... ..+..++ +|+.|+|++|++++..+..+..
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~----------~L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR----------FLLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS----------SCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC----------CccEEEccCCccccccHHHHHHHHcC
Confidence 4321 222 23588888888888875532 2333334 8888888888887666655543
Q ss_pred -ccCCCceecccccccc----cCC-CCCccccccccccccCccc
Q 005760 276 -LSYLKDLNLSFNKLEG----EIP-RGGSFGNFSAESFEGNELL 313 (678)
Q Consensus 276 -l~~L~~L~l~~N~~~~----~~~-~~~~~~~l~~~~~~~n~~~ 313 (678)
.++|+.|++++|.++. .++ .....+.++.+++.+|+..
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 5688888888888774 233 2344667778888877653
No 323
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4.6e-25 Score=245.21 Aligned_cols=238 Identities=27% Similarity=0.343 Sum_probs=199.8
Q ss_pred CccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEE
Q 005760 1 MLQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLIS 80 (678)
Q Consensus 1 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~ 80 (678)
.|+|++|+++ .+|. .+++|++|+|++|+|+. +|. .+++|++|+|++|.++.++. .+++|+.|+
T Consensus 65 ~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~---------~l~~L~~L~ 127 (622)
T 3g06_A 65 TLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA---------LPSGLCKLW 127 (622)
T ss_dssp EEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC---------CCTTCCEEE
T ss_pred EEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC---------CCCCcCEEE
Confidence 3789999999 6776 57899999999999995 454 78999999999999998763 468999999
Q ss_pred CccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcC
Q 005760 81 FSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKL 160 (678)
Q Consensus 81 L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i 160 (678)
+++|+++.+.. . + .+|++|+|++|++++. |. .+++|+.|++++|.+++ +| ..+++|+.|+|++|.|
T Consensus 128 L~~N~l~~lp~-~----l-~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 128 IFGNQLTSLPV-L----P-PGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQL 193 (622)
T ss_dssp CCSSCCSCCCC-C----C-TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC
T ss_pred CCCCCCCcCCC-C----C-CCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCC
Confidence 99999986533 1 2 4899999999999864 33 35889999999999985 55 4579999999999999
Q ss_pred CCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCcccc
Q 005760 161 EGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIG 240 (678)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 240 (678)
++ +|.. +++|+.|++++|.++. +|. .+++|+.|+|++|+|+.+| ..+++|+.|+|++|.|+. +|.
T Consensus 194 ~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~-lp~--- 258 (622)
T 3g06_A 194 AS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS-LPM--- 258 (622)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---
T ss_pred CC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc-CCc---
Confidence 94 5543 4789999999999994 443 2478999999999999998 456899999999999984 333
Q ss_pred ccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCC
Q 005760 241 NLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPR 295 (678)
Q Consensus 241 ~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 295 (678)
.++ +|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++..+.
T Consensus 259 ~~~----------~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 259 LPS----------GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCT----------TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ccc----------cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 233 8999999999999 5677899999999999999999987655
No 324
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.4e-25 Score=225.64 Aligned_cols=228 Identities=21% Similarity=0.243 Sum_probs=175.3
Q ss_pred CCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccc
Q 005760 21 SKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSH 100 (678)
Q Consensus 21 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 100 (678)
.++..+++..+.+... ..+..+++|+.|++++|.+..++ .+..+++|++|++++|.+.+.. .+..++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~-------~l~~l~~L~~L~l~~n~l~~~~---~l~~l~- 85 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ-------GIQYLPNVRYLALGGNKLHDIS---ALKELT- 85 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCT-------TGGGCTTCCEEECTTSCCCCCG---GGTTCT-
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccccc-------ccccCCCCcEEECCCCCCCCch---hhcCCC-
Confidence 3455566666666544 33456677777777777766544 3566777777777777776531 245555
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
+|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 67777777777777777778888999999999999887777778888999999999999987767778888999999999
Q ss_pred CCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccCCCCccccccccccccccCcccccEEE
Q 005760 181 GNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLN 259 (678)
Q Consensus 181 ~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~ 259 (678)
+|.+++..+..|..+++|+.|+|++|+++.++. .+..+++|+.|++++|++.+ .+++|+.|+
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----------------~~~~l~~l~ 228 (272)
T 3rfs_A 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----------------TCPGIRYLS 228 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----------------CTTTTHHHH
T ss_pred CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-----------------cCcHHHHHH
Confidence 999988877778888999999999999988766 47888999999999998763 234788889
Q ss_pred ccCCcCCCcchHHHhcccC
Q 005760 260 LSNNNLSGAIPASLEKLSY 278 (678)
Q Consensus 260 L~~N~l~~~~~~~~~~l~~ 278 (678)
+..|++++.+|..++.++.
T Consensus 229 ~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 229 EWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHHTGGGBBCTTSCBCG
T ss_pred HHHHhCCCcccCcccccCC
Confidence 9999999888888877665
No 325
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=6.2e-25 Score=222.63 Aligned_cols=202 Identities=23% Similarity=0.314 Sum_probs=115.9
Q ss_pred ccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhh
Q 005760 17 IFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVG 96 (678)
Q Consensus 17 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 96 (678)
+.++++++++++++|+++. +|..+. ++|+.|+|++|.++.++.. .|.++++|++|+|++|.++++.+. .
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~---~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLA-----TLMPYTRLTQLNLDRAELTKLQVD---G 74 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGG-----GGTTCTTCCEEECTTSCCCEEECC---S
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHH-----HhhcCCCCCEEECCCCccCcccCC---C
Confidence 5677888888888888884 454443 5788888888888766543 477888888888888887755332 2
Q ss_pred cccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccE
Q 005760 97 NLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYK 176 (678)
Q Consensus 97 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 176 (678)
.++ +|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|+.
T Consensus 75 ~l~-~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 75 TLP-VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp CCT-TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCC-cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 222 4555555555554 33444455555555555555555444445555555555555555555444444445555555
Q ss_pred EecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcc
Q 005760 177 LELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFF 231 (678)
Q Consensus 177 L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l 231 (678)
|+|++|+++...+..|..+++|+.|+|++|+|+.+|..+..+.+|+.|+|++|++
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 5555555554444444445555555555555555544444444444444444444
No 326
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1e-24 Score=219.08 Aligned_cols=203 Identities=23% Similarity=0.292 Sum_probs=175.0
Q ss_pred CCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccc
Q 005760 21 SKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSH 100 (678)
Q Consensus 21 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 100 (678)
.+++.+++++++++. +|..+. ++|+.|+|++|.++.++.. .|.++++|++|+|++|+++.+.+. .+..++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~i~~~-~~~~l~- 85 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSK-----AFHRLTKLRLLYLNDNKLQTLPAG-IFKELK- 85 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTT-----SSSSCTTCCEEECCSSCCSCCCTT-TTSSCT-
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHH-----HhcCCCCCCEEECCCCccCeeChh-hhcCCC-
Confidence 457889999998884 565554 5788999999988877753 578888999999999988755443 356666
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
+|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.|++..+..|..+++|+.|+++
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 89999999999988888889999999999999999998888889999999999999999997767778999999999999
Q ss_pred CCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccC
Q 005760 181 GNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTG 233 (678)
Q Consensus 181 ~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~ 233 (678)
+|.+++..+..|..+++|+.|+|++|+|+.+|. .|..+++|+.|+|++|++..
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 999998888889999999999999999999987 58889999999999999873
No 327
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1e-25 Score=226.53 Aligned_cols=222 Identities=23% Similarity=0.251 Sum_probs=192.4
Q ss_pred CCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCC
Q 005760 45 RNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLT 124 (678)
Q Consensus 45 ~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~ 124 (678)
+++..+++..+.+.... .+..+++|+.|++++|.+..... +..++ +|++|++++|.+++. ..+..++
T Consensus 19 ~~l~~l~l~~~~~~~~~-------~~~~l~~L~~L~l~~~~i~~~~~---l~~l~-~L~~L~l~~n~l~~~--~~l~~l~ 85 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV-------TQNELNSIDQIIANNSDIKSVQG---IQYLP-NVRYLALGGNKLHDI--SALKELT 85 (272)
T ss_dssp HHHHHHHHTCSCTTSEE-------CHHHHTTCCEEECTTSCCCCCTT---GGGCT-TCCEEECTTSCCCCC--GGGTTCT
T ss_pred HHHHHHHhcCccccccc-------ccccccceeeeeeCCCCcccccc---cccCC-CCcEEECCCCCCCCc--hhhcCCC
Confidence 45566777777776554 35678999999999999875532 55666 899999999999874 4788999
Q ss_pred CCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceecc
Q 005760 125 NLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLG 204 (678)
Q Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~ 204 (678)
+|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 99999999999998888889999999999999999997777788999999999999999998888888999999999999
Q ss_pred ccccccccc-cccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCcee
Q 005760 205 SNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLN 283 (678)
Q Consensus 205 ~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 283 (678)
+|+++.++. .+..+++|+.|++++|++++..+..+..++ +|+.|+|++|.+.+. ++.|+.|+
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~----------~L~~L~l~~N~~~~~-------~~~l~~l~ 228 (272)
T 3rfs_A 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT----------SLQYIWLHDNPWDCT-------CPGIRYLS 228 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT----------TCCEEECCSSCBCCC-------TTTTHHHH
T ss_pred CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc----------CCCEEEccCCCcccc-------CcHHHHHH
Confidence 999998876 478899999999999999988887777777 999999999998754 56799999
Q ss_pred cccccccccCCCC
Q 005760 284 LSFNKLEGEIPRG 296 (678)
Q Consensus 284 l~~N~~~~~~~~~ 296 (678)
+.+|.+++.+|..
T Consensus 229 ~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 229 EWINKHSGVVRNS 241 (272)
T ss_dssp HHHHHTGGGBBCT
T ss_pred HHHHhCCCcccCc
Confidence 9999999988875
No 328
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.5e-26 Score=242.79 Aligned_cols=265 Identities=17% Similarity=0.182 Sum_probs=155.8
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCC----ccccCCC-CCCEEEccCccCCCCccchhhcccccCC-CC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIP----NTFGNLR-NLQALRLSNNYLTSSTLELSFLSSLSNC-KS 75 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~~l-~~ 75 (678)
++|++|++++.+|..+...++|++|+|++|.|+...+ ++|.+++ +|++|+|++|.++..... .+...+... ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCCC
Confidence 5688888888888877777778999999988887666 7788888 888888888888776543 111222233 78
Q ss_pred CcEEECccCCCcccCChhhhhc---ccccccEEEcccccccccCCccccC-----CCCCcEEEccCCccCCcCCh----h
Q 005760 76 LTLISFSNNPLDGILPKTSVGN---LSHSLEYFEMAYCNVSGGIPEEIGN-----LTNLTIIYLGGNKLNGSIPS----T 143 (678)
Q Consensus 76 L~~L~L~~n~i~~~~~~~~~~~---l~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~N~l~~~~~~----~ 143 (678)
|++|+|++|.+++..+...... .+.+|++|+|++|++++..+..+.. .++|++|+|++|++++.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888888876655432221 2136777777777776655544332 24677777777766643332 2
Q ss_pred hhccC-CCCEEEccCCcCCCCCCCcc----cCC-CCccEEecCCCcCCCCC----hhhhhc-cccccceecccccccccc
Q 005760 144 LGKLQ-KLQGLGLENNKLEGSIPDSI----CHS-DELYKLELGGNKLSGSI----PECFNN-LASLRILLLGSNELTSIP 212 (678)
Q Consensus 144 ~~~l~-~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~l~~N~i~~~~----~~~~~~-l~~L~~L~l~~N~l~~l~ 212 (678)
+..++ +|++|+|++|+|++..+..+ ..+ ++|++|+|++|.|++.. +..+.. .++|++|+|++|.|+..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33444 66666666666664444322 233 36666666666666432 233333 236666666666665432
Q ss_pred -----ccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcch
Q 005760 213 -----LTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIP 270 (678)
Q Consensus 213 -----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 270 (678)
..+..+++|+.|+|++|.+.+..+..+..+. -.+..+++|+.|+|++|++....+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~---~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG---AAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH---TTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH---HHhccCCceEEEecCCCcCCCcch
Confidence 2244556666666666665443333221111 011133356666666666654433
No 329
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.2e-25 Score=235.97 Aligned_cols=260 Identities=18% Similarity=0.191 Sum_probs=207.4
Q ss_pred EEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCC-CCcEEECccCCCcccCChhhhhcc----c
Q 005760 25 ILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCK-SLTLISFSNNPLDGILPKTSVGNL----S 99 (678)
Q Consensus 25 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~~l----~ 99 (678)
.++|++|++++.+|..+...++|++|+|++|.++..+.. .+...|..++ +|++|+|++|.+++..+.. +..+ .
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTV-ELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHH-HHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHH-HHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccC
Confidence 578999999998888888888899999999999987753 3345688898 9999999999998776655 4443 2
Q ss_pred ccccEEEcccccccccCCccccC----C-CCCcEEEccCCccCCcCChhhhc-----cCCCCEEEccCCcCCCCCC----
Q 005760 100 HSLEYFEMAYCNVSGGIPEEIGN----L-TNLTIIYLGGNKLNGSIPSTLGK-----LQKLQGLGLENNKLEGSIP---- 165 (678)
Q Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~----l-~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~L~~n~i~~~~~---- 165 (678)
.+|++|+|++|.+++..+..+.. + ++|++|+|++|++++..+..+.. .++|++|+|++|.+++..+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 48999999999999887775444 4 89999999999998776665543 3699999999999985433
Q ss_pred CcccCCC-CccEEecCCCcCCCCChhhhhc----c-ccccceecccccccc-----cccccccc-ccccEEEecCCcccC
Q 005760 166 DSICHSD-ELYKLELGGNKLSGSIPECFNN----L-ASLRILLLGSNELTS-----IPLTFWNL-KDILYLNFSSNFFTG 233 (678)
Q Consensus 166 ~~~~~l~-~L~~L~l~~N~i~~~~~~~~~~----l-~~L~~L~l~~N~l~~-----l~~~~~~l-~~L~~L~l~~N~l~~ 233 (678)
..+..++ +|++|+|++|.+++..+..+.. + ++|+.|+|++|.|+. ++..+..+ ++|+.|+|++|.+++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 3445555 9999999999999888765554 4 699999999999997 67777764 599999999999997
Q ss_pred CCCccccccccccccccCcccccEEEccCCcCCCcchH-------HHhcccCCCceeccccccccc
Q 005760 234 PLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPA-------SLEKLSYLKDLNLSFNKLEGE 292 (678)
Q Consensus 234 ~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~l~~N~~~~~ 292 (678)
..+..+..+ ...+++|+.|+|++|.++...+. .+..+++|+.||+++|++...
T Consensus 240 ~~~~~l~~~------~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 240 PSLENLKLL------KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCHHHHHHT------TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHH------HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 766444322 13445999999999996655443 445678899999999998865
No 330
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.4e-24 Score=213.95 Aligned_cols=195 Identities=22% Similarity=0.207 Sum_probs=120.0
Q ss_pred CCCEEecCCCcccccCCccccCCCCCCEEEccCcc-CCCCccchhhcccccCCCCCcEEECcc-CCCcccCChhhhhccc
Q 005760 22 KLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNY-LTSSTLELSFLSSLSNCKSLTLISFSN-NPLDGILPKTSVGNLS 99 (678)
Q Consensus 22 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~ 99 (678)
+|++|+|++|+|+++.+.+|.++++|++|++++|. ++.++.. .|.++++|++|++++ |+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-----~f~~l~~L~~L~l~~~n~l~------------ 94 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-----SFYNLSKVTHIEIRNTRNLT------------ 94 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-----TEESCTTCCEEEEEEETTCC------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-----HcCCCcCCcEEECCCCCCee------------
Confidence 56666666666665555566666666666666664 5554432 355555555555555 5554
Q ss_pred ccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCC---EEEccCC-cCCCCCCCcccCCCCcc
Q 005760 100 HSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQ---GLGLENN-KLEGSIPDSICHSDELY 175 (678)
Q Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~ 175 (678)
+..+..|.++++|++|++++|++++ +|. |..+++|+ +|++++| .+++..+..|..+++|+
T Consensus 95 --------------~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 95 --------------YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp --------------EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred --------------EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 3444556666677777777777664 444 66666666 7777777 66655555566677777
Q ss_pred -EEecCCCcCCCCChhhhhccccccceeccccc-cccccc-ccccc-ccccEEEecCCcccCCCCccccccccccccccC
Q 005760 176 -KLELGGNKLSGSIPECFNNLASLRILLLGSNE-LTSIPL-TFWNL-KDILYLNFSSNFFTGPLPLEIGNLKIARIDSCD 251 (678)
Q Consensus 176 -~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~-l~~l~~-~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~ 251 (678)
.|++++|.++...+..|.. ++|+.|+|++|+ ++.++. .|..+ ++|+.|++++|++++..+.. ++
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~---~~-------- 226 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG---LE-------- 226 (239)
T ss_dssp EEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTT---CT--------
T ss_pred eEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhH---hc--------
Confidence 7777777776444444444 667777777774 776654 46666 77777777777776443332 22
Q ss_pred cccccEEEccCC
Q 005760 252 LISLISLNLSNN 263 (678)
Q Consensus 252 ~~~L~~L~L~~N 263 (678)
+|+.|+++++
T Consensus 227 --~L~~L~l~~~ 236 (239)
T 2xwt_C 227 --HLKELIARNT 236 (239)
T ss_dssp --TCSEEECTTC
T ss_pred --cCceeeccCc
Confidence 6777777665
No 331
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=6.2e-26 Score=240.58 Aligned_cols=256 Identities=18% Similarity=0.261 Sum_probs=157.1
Q ss_pred cCCccccCCCCCCEEecCCCcccccC----CccccCCCCCCEEEccCccCCCCccch-----hhcccccCCCCCcEEECc
Q 005760 12 TIPRFIFNASKLSILELSDNSFSGFI----PNTFGNLRNLQALRLSNNYLTSSTLEL-----SFLSSLSNCKSLTLISFS 82 (678)
Q Consensus 12 ~~p~~~~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~i~~~~~~~-----~~~~~~~~l~~L~~L~L~ 82 (678)
.++..+..+++|++|+|++|+|+... +..|.++++|++|+|++|.+..+...+ .+...|..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45555666666777777777666542 233556667777777666555443211 111233556666666666
Q ss_pred cCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhh----cc---------CC
Q 005760 83 NNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLG----KL---------QK 149 (678)
Q Consensus 83 ~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~l---------~~ 149 (678)
+|.++..... .++..+..+++|++|+|++|.+++..+..+. .+ ++
T Consensus 103 ~n~l~~~~~~----------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 103 DNAFGPTAQE----------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp SCCCCTTTHH----------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHH----------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 6665532111 2344566677777777777776533333333 23 77
Q ss_pred CCEEEccCCcCC-CCCC---CcccCCCCccEEecCCCcCCC-----CChhhhhccccccceecccccc-----ccccccc
Q 005760 150 LQGLGLENNKLE-GSIP---DSICHSDELYKLELGGNKLSG-----SIPECFNNLASLRILLLGSNEL-----TSIPLTF 215 (678)
Q Consensus 150 L~~L~L~~n~i~-~~~~---~~~~~l~~L~~L~l~~N~i~~-----~~~~~~~~l~~L~~L~l~~N~l-----~~l~~~~ 215 (678)
|++|+|++|+++ ..++ ..+..+++|++|+|++|.++. ..+..+..+++|+.|+|++|.| ..+|..+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 777777777775 2233 355567777777777777762 2333667777888888888887 4566677
Q ss_pred cccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCC----cchHHH-hcccCCCceeccccccc
Q 005760 216 WNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSG----AIPASL-EKLSYLKDLNLSFNKLE 290 (678)
Q Consensus 216 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~l~~N~~~ 290 (678)
..+++|+.|+|++|.+++.....+.. .+..+.+++|+.|+|++|+++. .+|..+ ..+++|+.|++++|+++
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~----~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVD----AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHH----HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHH----HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 77888888888888877542221111 0001224488888888888886 366666 55788888888888887
Q ss_pred ccC
Q 005760 291 GEI 293 (678)
Q Consensus 291 ~~~ 293 (678)
+..
T Consensus 317 ~~~ 319 (386)
T 2ca6_A 317 EED 319 (386)
T ss_dssp TTS
T ss_pred cch
Confidence 554
No 332
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.91 E-value=1.9e-25 Score=245.32 Aligned_cols=185 Identities=18% Similarity=0.206 Sum_probs=144.3
Q ss_pred CCCccccCCCceeEEEEEeCCCcEEEEEEeecccC--------chhhhHHHHHHHHHhCCCccceeeeeeeecCCeEEEE
Q 005760 395 SENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYG--------RVFKSFDVECEMMKSIRHRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 395 ~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv 466 (678)
...+.||+|+||.||+|.. .++.+++|+...... ...+.+.+|+++++.++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4467899999999999955 578899998643211 1234578999999999999999666666566777999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCC
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTRED 546 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~ 546 (678)
|||+++++|.+++.. +..++.|+++||+||| +++|+||||||+||+++. .+||+|||+++......
T Consensus 418 mE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~ 483 (540)
T 3en9_A 418 MSYINGKLAKDVIED---------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDE 483 (540)
T ss_dssp EECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHH
T ss_pred EECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCCcc
Confidence 999999999999976 4579999999999999 999999999999999999 99999999998765322
Q ss_pred Ccc-----eeecccCCccccCccccCC--CCCCccchHHHHHHHHHHHHcCCCCC
Q 005760 547 QST-----IQTQTLATIGYMAPEYGKE--GRVSANGDVYSFGIMLMETFTRKKPT 594 (678)
Q Consensus 547 ~~~-----~~~~~~~~~~y~aPE~~~~--~~~~~~~DvwslGv~l~ell~g~~p~ 594 (678)
... ......||+.|+|||++.. ..|+..+|+|+..+-..+.+.++.+|
T Consensus 484 ~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 484 DKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred ccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 111 1235679999999999876 56788899999999888888777665
No 333
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3.6e-23 Score=205.32 Aligned_cols=143 Identities=29% Similarity=0.344 Sum_probs=73.2
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
.+++|+|++|++.+..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 34444444444444444445555555555555555555555555555555555555555554444455555555555555
Q ss_pred CCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccCCCCccccccc
Q 005760 181 GNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLK 243 (678)
Q Consensus 181 ~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 243 (678)
+|.|++..+..|..+++|+.|+|++|+|+.++. .|..+++|+.|+|++|++++..+..|..++
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 555554444445555555555555555555444 344444555555555544444443443333
No 334
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=6.2e-24 Score=209.28 Aligned_cols=197 Identities=20% Similarity=0.165 Sum_probs=134.7
Q ss_pred CCcEEECccCCCcccCChhhhhcccccccEEEccccc-ccccCCccccCCCCCcEEEccC-CccCCcCChhhhccCCCCE
Q 005760 75 SLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCN-VSGGIPEEIGNLTNLTIIYLGG-NKLNGSIPSTLGKLQKLQG 152 (678)
Q Consensus 75 ~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~ 152 (678)
+|++|++++|+++++.+.. +..++ +|++|++++|+ ++.+.+..|.++++|++|++++ |+++++.+..|.++++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~-~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHA-FSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTT-TTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHH-ccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3444444444444332222 33333 44444444443 4444455677888888888887 8888766778888888888
Q ss_pred EEccCCcCCCCCCCcccCCCCcc---EEecCCC-cCCCCChhhhhcccccc-ceeccccccccccccccccccccEEEec
Q 005760 153 LGLENNKLEGSIPDSICHSDELY---KLELGGN-KLSGSIPECFNNLASLR-ILLLGSNELTSIPLTFWNLKDILYLNFS 227 (678)
Q Consensus 153 L~L~~n~i~~~~~~~~~~l~~L~---~L~l~~N-~i~~~~~~~~~~l~~L~-~L~l~~N~l~~l~~~~~~l~~L~~L~l~ 227 (678)
|+|++|.+++ +|. |..+++|+ +|++++| .+++..+..|.++++|+ .|++++|+++.+|......++|+.|+++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 8888888884 555 77777777 8888888 88877777788888888 8888888888887743333778888888
Q ss_pred CCc-ccCCCCcccccc-ccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceeccccc
Q 005760 228 SNF-FTGPLPLEIGNL-KIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNK 288 (678)
Q Consensus 228 ~N~-l~~~~~~~~~~l-~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 288 (678)
+|+ +++..+..|.++ + +|+.|+|++|++++..+. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~----------~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYS----------GPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSB----------CCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhcccc----------CCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 884 776666666665 5 788888888888755443 56677777777653
No 335
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.6e-25 Score=237.49 Aligned_cols=261 Identities=22% Similarity=0.228 Sum_probs=166.2
Q ss_pred CccccCCcCcccCC----ccccCCCCCCEEecCCCcc---cccCCccc-------cCCCCCCEEEccCccCCCCccchhh
Q 005760 1 MLQMWENNFSGTIP----RFIFNASKLSILELSDNSF---SGFIPNTF-------GNLRNLQALRLSNNYLTSSTLELSF 66 (678)
Q Consensus 1 ~L~l~~~~~~~~~p----~~~~~l~~L~~L~l~~n~i---~~~~~~~~-------~~l~~L~~L~l~~n~i~~~~~~~~~ 66 (678)
.|+|++|++.+..+ ..+..+++|++|+|++|.+ ++.+|..+ .++++|++|+|++|.++..... .+
T Consensus 36 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-~l 114 (386)
T 2ca6_A 36 EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE-PL 114 (386)
T ss_dssp EEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH-HH
T ss_pred EEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH-HH
Confidence 37899999987644 4477899999999999754 44445444 7899999999999999874322 23
Q ss_pred cccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccC-CcCC---h
Q 005760 67 LSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLN-GSIP---S 142 (678)
Q Consensus 67 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~---~ 142 (678)
+..+..+++|++|+|++|.++...+......+. . +..|.+. +..++|++|+|++|+++ ...+ .
T Consensus 115 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~----~--l~~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ----E--LAVNKKA-------KNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHH----H--HHHHHHH-------HTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHH----H--Hhhhhhc-------ccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 446788999999999999996443332111111 0 0000110 01166666666666665 2222 3
Q ss_pred hhhccCCCCEEEccCCcCCC-----CCCCcccCCCCccEEecCCCcCC----CCChhhhhccccccceeccccccccc--
Q 005760 143 TLGKLQKLQGLGLENNKLEG-----SIPDSICHSDELYKLELGGNKLS----GSIPECFNNLASLRILLLGSNELTSI-- 211 (678)
Q Consensus 143 ~~~~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~l~~N~i~----~~~~~~~~~l~~L~~L~l~~N~l~~l-- 211 (678)
.+..+++|++|+|++|+|+. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.|+..
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 45566677777777776652 22335666777777777777774 35566677777777777777777643
Q ss_pred ---cccc--cccccccEEEecCCcccC----CCCccc-cccccccccccCcccccEEEccCCcCCCcch--HHH-hcccC
Q 005760 212 ---PLTF--WNLKDILYLNFSSNFFTG----PLPLEI-GNLKIARIDSCDLISLISLNLSNNNLSGAIP--ASL-EKLSY 278 (678)
Q Consensus 212 ---~~~~--~~l~~L~~L~l~~N~l~~----~~~~~~-~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~--~~~-~~l~~ 278 (678)
+..+ +.+++|+.|+|++|.+++ .+|..+ .+++ +|+.|+|++|++++..+ ..+ ..+++
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~----------~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP----------DLLFLELNGNRFSEEDDVVDEIREVFST 331 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT----------TCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC----------CceEEEccCCcCCcchhHHHHHHHHhhh
Confidence 4445 337778888888887775 244433 2233 88888888888887664 322 23455
Q ss_pred CCceecc
Q 005760 279 LKDLNLS 285 (678)
Q Consensus 279 L~~L~l~ 285 (678)
++.+++.
T Consensus 332 ~~~~~l~ 338 (386)
T 2ca6_A 332 RGRGELD 338 (386)
T ss_dssp HTCCEEC
T ss_pred cCcchhh
Confidence 5545443
No 336
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.8e-23 Score=213.99 Aligned_cols=205 Identities=21% Similarity=0.362 Sum_probs=115.6
Q ss_pred ccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECcc
Q 005760 4 MWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSN 83 (678)
Q Consensus 4 l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~ 83 (678)
+..+++.+.++ +..+++|++|++++|.++.. + .+..+++|+.|+|++|.+..++. +..+++|++|+|++
T Consensus 26 l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~-------~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 26 AGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP-------LKNLTKITELELSG 94 (308)
T ss_dssp TTCSSTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-------GTTCCSCCEEECCS
T ss_pred hCCCCcCceec--HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh-------HccCCCCCEEEccC
Confidence 34445544333 34566777777777777743 3 57777777777777777766542 56677777777777
Q ss_pred CCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCC
Q 005760 84 NPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGS 163 (678)
Q Consensus 84 n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 163 (678)
|++++.. .+..++ +|++|++++|++++.. .+..+++|++|++++|++++..+ +..+++|++|+|++|.+++
T Consensus 95 n~l~~~~---~~~~l~-~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~- 165 (308)
T 1h6u_A 95 NPLKNVS---AIAGLQ-SIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD- 165 (308)
T ss_dssp CCCSCCG---GGTTCT-TCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-
T ss_pred CcCCCch---hhcCCC-CCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-
Confidence 7776441 234443 5555555555555432 25555555555555555553322 5555555555555555553
Q ss_pred CCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCccc
Q 005760 164 IPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 164 ~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~ 232 (678)
++. +..+++|+.|++++|.+++..+ +..+++|++|+|++|+++.++. +..+++|+.|++++|+++
T Consensus 166 ~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 166 LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 222 5555555555555555553322 5555555555555555555542 455555555555555554
No 337
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3e-23 Score=205.90 Aligned_cols=182 Identities=24% Similarity=0.279 Sum_probs=163.0
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
+.++++++++.++. +|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45667777777764 444443 689999999999998888899999999999999999998888889999999999999
Q ss_pred CCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccCCCCccccccccccccccCcccccEEE
Q 005760 181 GNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLN 259 (678)
Q Consensus 181 ~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~ 259 (678)
+|.+++..+..|..+++|++|+|++|+|+.++. .|..+++|+.|+|++|.+++..+..|.+++ +|+.|+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------~L~~L~ 161 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT----------NLQTLS 161 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------TCCEEE
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc----------CCCEEE
Confidence 999998888899999999999999999999987 478999999999999999988887888777 999999
Q ss_pred ccCCcCCCcchHHHhcccCCCceecccccccccCCC
Q 005760 260 LSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPR 295 (678)
Q Consensus 260 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 295 (678)
|++|++++..+..+..+++|+.|++++|+|.|.+..
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 999999988888999999999999999999998433
No 338
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=3.2e-23 Score=212.16 Aligned_cols=214 Identities=21% Similarity=0.341 Sum_probs=142.6
Q ss_pred CCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccccc
Q 005760 22 KLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHS 101 (678)
Q Consensus 22 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~ 101 (678)
++..+.+..+.++... .+..+++|++|++++|.+..++ .+..+++|++|+|++|.+.++.
T Consensus 20 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~-------~~~~l~~L~~L~L~~n~i~~~~----------- 79 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-------GVQYLNNLIGLELKDNQITDLA----------- 79 (308)
T ss_dssp HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCG-----------
T ss_pred HHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCch-------hhhccCCCCEEEccCCcCCCCh-----------
Confidence 3444556666665432 2445677777777777776654 2556667777777777665332
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCC
Q 005760 102 LEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGG 181 (678)
Q Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 181 (678)
+ +..+++|++|+|++|++++. ..+..+++|++|+|++|.+++ ++ .+..+++|+.|++++
T Consensus 80 ---------------~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 80 ---------------P--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDL 138 (308)
T ss_dssp ---------------G--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCS
T ss_pred ---------------h--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCC
Confidence 2 55667777777777777642 356677777777777777763 33 366777777777777
Q ss_pred CcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEcc
Q 005760 182 NKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLS 261 (678)
Q Consensus 182 N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~ 261 (678)
|.+++..+ +..+++|+.|+|++|+++.++. +..+++|+.|++++|.+++..+ +..++ +|+.|+|+
T Consensus 139 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~----------~L~~L~L~ 203 (308)
T 1h6u_A 139 NQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLP----------NLIEVHLK 203 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCT----------TCCEEECT
T ss_pred CccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCC----------CCCEEEcc
Confidence 77775433 6777777777777777777665 6777777777777777775443 44444 78888888
Q ss_pred CCcCCCcchHHHhcccCCCceecccccccccC
Q 005760 262 NNNLSGAIPASLEKLSYLKDLNLSFNKLEGEI 293 (678)
Q Consensus 262 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 293 (678)
+|++++..+ +..+++|+.|++++|++++.+
T Consensus 204 ~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 204 NNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp TSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred CCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 888876553 677888888888888887643
No 339
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=213.99 Aligned_cols=227 Identities=18% Similarity=0.141 Sum_probs=180.6
Q ss_pred CCCCCEEecCCCcccccCC---ccccCCCCCCEEEccCccCCCCccchhhcccc--cCCCCCcEEECccCCCcccCCh--
Q 005760 20 ASKLSILELSDNSFSGFIP---NTFGNLRNLQALRLSNNYLTSSTLELSFLSSL--SNCKSLTLISFSNNPLDGILPK-- 92 (678)
Q Consensus 20 l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~-- 92 (678)
...++.|.+.++.++.... ..+..+++|++|+|++|.+....+. .+ ..+++|++|+|++|.+++..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 137 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPP-----LPLEATGLALSSLRLRNVSWATGRSWLA 137 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCC-----CSSSCCCBCCSSCEEESCCCSSTTSSHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhh-----hhhhccCCCCCEEEeecccccchhhhhH
Confidence 3457889999988864211 1122457799999999999866543 34 7899999999999999875541
Q ss_pred -hhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCc---C-ChhhhccCCCCEEEccCCcCCCCCCC-
Q 005760 93 -TSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGS---I-PSTLGKLQKLQGLGLENNKLEGSIPD- 166 (678)
Q Consensus 93 -~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~-~~~~~~l~~L~~L~L~~n~i~~~~~~- 166 (678)
..+..++ +|++|+|++|++.+..+..|.++++|++|+|++|++.+. . +..+..+++|++|+|++|+++ .++.
T Consensus 138 ~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 215 (310)
T 4glp_A 138 ELQQWLKP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGV 215 (310)
T ss_dssp HHHTTBCS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHH
T ss_pred HHHhhhcc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHH
Confidence 2233454 899999999999999889999999999999999998642 1 223468899999999999998 4443
Q ss_pred ---cccCCCCccEEecCCCcCCCCChhhhhcc---ccccceeccccccccccccccccccccEEEecCCcccCCCCcccc
Q 005760 167 ---SICHSDELYKLELGGNKLSGSIPECFNNL---ASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIG 240 (678)
Q Consensus 167 ---~~~~l~~L~~L~l~~N~i~~~~~~~~~~l---~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 240 (678)
.+..+++|++|+|++|.+++..|..+..+ ++|++|+|++|+|+.+|..+. ++|+.|+|++|++++. |. +.
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~ 291 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PD 291 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TT
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hh
Confidence 35778999999999999998878777776 699999999999999998765 7999999999999964 22 34
Q ss_pred ccccccccccCcccccEEEccCCcCCC
Q 005760 241 NLKIARIDSCDLISLISLNLSNNNLSG 267 (678)
Q Consensus 241 ~l~~~~~~~~~~~~L~~L~L~~N~l~~ 267 (678)
.++ +|+.|+|++|+++.
T Consensus 292 ~l~----------~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 292 ELP----------EVDNLTLDGNPFLV 308 (310)
T ss_dssp SCC----------CCSCEECSSTTTSC
T ss_pred hCC----------CccEEECcCCCCCC
Confidence 444 99999999999975
No 340
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=214.23 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=88.4
Q ss_pred ccEEEcccccccccCCccc--cCCCCCcEEEccCCccCCcCC----hhhhccCCCCEEEccCCcCCCCCCCcccCCCCcc
Q 005760 102 LEYFEMAYCNVSGGIPEEI--GNLTNLTIIYLGGNKLNGSIP----STLGKLQKLQGLGLENNKLEGSIPDSICHSDELY 175 (678)
Q Consensus 102 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 175 (678)
|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|.+++..+..|..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444444444444 444555555555555443222 2223344555555555555444444444555555
Q ss_pred EEecCCCcCCCC--C--hhhhhccccccceecccccccccccc----ccccccccEEEecCCcccCCCCccccccccccc
Q 005760 176 KLELGGNKLSGS--I--PECFNNLASLRILLLGSNELTSIPLT----FWNLKDILYLNFSSNFFTGPLPLEIGNLKIARI 247 (678)
Q Consensus 176 ~L~l~~N~i~~~--~--~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~ 247 (678)
+|+|++|++.+. . +..+..+++|++|+|++|+|+.++.. +..+++|++|+|++|.+++..|..+..+.
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~---- 248 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM---- 248 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC----
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc----
Confidence 555555544321 1 11123444555555555555444331 23444555555555555544444333321
Q ss_pred cccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccccccccccCcc
Q 005760 248 DSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL 312 (678)
Q Consensus 248 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~n~~ 312 (678)
.+++|++|+|++|+|+ .+|..+. ++|+.|++++|++++. |....++.++.+++.+|++
T Consensus 249 ---~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 249 ---WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ---CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred ---CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence 1124555555555554 2232221 4455555555555432 2223344445555555543
No 341
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=6.4e-23 Score=214.05 Aligned_cols=239 Identities=21% Similarity=0.202 Sum_probs=141.1
Q ss_pred CEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccccccc
Q 005760 24 SILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLE 103 (678)
Q Consensus 24 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~ 103 (678)
+.++.++++++ .+|..+ .+++++|+|++|+|+.++.. +|.++++|++|+|++|++.+..+...+.+++..++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~-----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKG-----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTT-----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHH-----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 56777777777 445544 25777888888888776654 47777888888888887765555444555553334
Q ss_pred EEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccC-CcCCCCCCCcccCCC-CccEEecCC
Q 005760 104 YFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLEN-NKLEGSIPDSICHSD-ELYKLELGG 181 (678)
Q Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~-~L~~L~l~~ 181 (678)
.+.+++|+++.+.|..|.++++|++|++++|+++...+..+....++..|++.+ |.+....+..|..+. .++.|+|++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 455566666666666667777777777777777655555555556666666644 455544444555543 466666666
Q ss_pred CcCCCCChhhhhccccccceecc-ccccccccc-cccccccccEEEecCCcccCCCCccccccccccccccCcccccEEE
Q 005760 182 NKLSGSIPECFNNLASLRILLLG-SNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLN 259 (678)
Q Consensus 182 N~i~~~~~~~~~~l~~L~~L~l~-~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~ 259 (678)
|+|+.+.+..| ...+|+.|+++ +|.++.+|. .|..+++|+.|+|++|+|+...+..|. +|+.|.
T Consensus 164 N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~-------------~L~~L~ 229 (350)
T 4ay9_X 164 NGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE-------------NLKKLR 229 (350)
T ss_dssp SCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT-------------TCCEEE
T ss_pred ccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc-------------cchHhh
Confidence 66664433333 33456666665 355666655 456666666666666666644433333 344444
Q ss_pred ccCC-cCCCcchHHHhcccCCCceeccc
Q 005760 260 LSNN-NLSGAIPASLEKLSYLKDLNLSF 286 (678)
Q Consensus 260 L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 286 (678)
+.++ +++ ..| .+..+++|+.+++.+
T Consensus 230 ~l~~~~l~-~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 230 ARSTYNLK-KLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTTCC-CCC-CTTTCCSCCEEECSC
T ss_pred hccCCCcC-cCC-CchhCcChhhCcCCC
Confidence 3333 233 333 245555666665543
No 342
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=9.7e-24 Score=219.28 Aligned_cols=253 Identities=17% Similarity=0.237 Sum_probs=189.7
Q ss_pred CCCEEecCCCcccccCCccccCC--CCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccc
Q 005760 22 KLSILELSDNSFSGFIPNTFGNL--RNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLS 99 (678)
Q Consensus 22 ~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 99 (678)
.++.|++++|.+. +..+..+ ++++.|++++|.+...... +..+++|++|+|++|.+.+......+..++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE------HFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS------CCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh------hccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 4788888888877 4666777 8888999998888776543 457888999999988876542223355565
Q ss_pred ccccEEEcccccccccCCccccCCCCCcEEEccCC-ccCCc-CChhhhccCCCCEEEccCC-cCCCC-CCCcccCCC-Cc
Q 005760 100 HSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGN-KLNGS-IPSTLGKLQKLQGLGLENN-KLEGS-IPDSICHSD-EL 174 (678)
Q Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~-~L 174 (678)
+|++|+|++|.+++..+..+..+++|++|+|++| .+++. .+..+.++++|++|+|++| .+++. ++..+..++ +|
T Consensus 119 -~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 119 -KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp -CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred -CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 8899999999888888888888999999999999 67642 5666788899999999999 88743 466678888 99
Q ss_pred cEEecCCC--cCC-CCChhhhhccccccceeccccc-cc-cccccccccccccEEEecCCcccCCCCccccccccccccc
Q 005760 175 YKLELGGN--KLS-GSIPECFNNLASLRILLLGSNE-LT-SIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDS 249 (678)
Q Consensus 175 ~~L~l~~N--~i~-~~~~~~~~~l~~L~~L~l~~N~-l~-~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~ 249 (678)
++|++++| .++ +.++..+..+++|+.|+|++|. ++ ..+..+..+++|+.|++++|. +..+..+..+
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l------- 268 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLEL------- 268 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGG-------
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHH-------
Confidence 99999999 455 3556777889999999999998 65 456678888999999999996 2334322111
Q ss_pred cCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCC
Q 005760 250 CDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRG 296 (678)
Q Consensus 250 ~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 296 (678)
..+++|+.|+|++| ++...-..+. ..+..|++++|++++..|..
T Consensus 269 ~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 269 GEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred hcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 13459999999999 5543333332 24777888999998877764
No 343
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.8e-22 Score=210.61 Aligned_cols=238 Identities=18% Similarity=0.190 Sum_probs=190.0
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCC-CccchhhcccccCCCCCcE-E
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTS-STLELSFLSSLSNCKSLTL-I 79 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~~~l~~L~~-L 79 (678)
++-++++++ .+|..+. +++++|+|++|+|+.+.+++|.++++|++|+|++|++.. ++.. .|.++++|+. +
T Consensus 14 v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-----~f~~L~~l~~~l 85 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-----VFSNLPKLHEIR 85 (350)
T ss_dssp EEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-----SBCSCTTCCEEE
T ss_pred EEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-----Hhhcchhhhhhh
Confidence 345678888 8887664 689999999999998878899999999999999999855 4433 5889988775 6
Q ss_pred ECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccC-CccCCcCChhhhccC-CCCEEEccC
Q 005760 80 SFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGG-NKLNGSIPSTLGKLQ-KLQGLGLEN 157 (678)
Q Consensus 80 ~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~-~L~~L~L~~ 157 (678)
.++.|+++.+.+.. +..++ +|++|++++|++....+..+....++..|++.+ |++..+.+..|..+. .++.|+|++
T Consensus 86 ~~~~N~l~~l~~~~-f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 86 IEKANNLLYINPEA-FQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEETTCCEECTTS-BCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred cccCCcccccCchh-hhhcc-ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 67789998877665 77787 899999999999988888888888999999966 678877777888775 699999999
Q ss_pred CcCCCCCCCcccCCCCccEEecCC-CcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccCCC
Q 005760 158 NKLEGSIPDSICHSDELYKLELGG-NKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPL 235 (678)
Q Consensus 158 n~i~~~~~~~~~~l~~L~~L~l~~-N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~ 235 (678)
|+|+ .++......++|+.|++++ |.++.+.++.|.++++|+.|+|++|+|+.+|. .+. +|+.|.+.++.-....
T Consensus 164 N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKL 239 (350)
T ss_dssp SCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCC
T ss_pred cccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcC
Confidence 9999 5565666678999999975 77886666789999999999999999999987 354 5555554444333344
Q ss_pred CccccccccccccccCcccccEEEccCCc
Q 005760 236 PLEIGNLKIARIDSCDLISLISLNLSNNN 264 (678)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~~L~~L~L~~N~ 264 (678)
| .+..++ +|+.+++.++.
T Consensus 240 P-~l~~l~----------~L~~l~l~~~~ 257 (350)
T 4ay9_X 240 P-TLEKLV----------ALMEASLTYPS 257 (350)
T ss_dssp C-CTTTCC----------SCCEEECSCHH
T ss_pred C-CchhCc----------ChhhCcCCCCc
Confidence 4 244444 99999997653
No 344
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7.3e-24 Score=220.19 Aligned_cols=251 Identities=16% Similarity=0.188 Sum_probs=200.9
Q ss_pred ccccCCcCcccCCccccCC--CCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEE
Q 005760 2 LQMWENNFSGTIPRFIFNA--SKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLI 79 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L 79 (678)
|+++++++. |..+..+ .+++.|++++|.+.+..+. +.++++|++|+|++|.+.... ++..+..+++|++|
T Consensus 52 l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~----~~~~~~~~~~L~~L 123 (336)
T 2ast_B 52 LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST----LHGILSQCSKLQNL 123 (336)
T ss_dssp EECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH----HHHHHTTBCCCSEE
T ss_pred eccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH----HHHHHhhCCCCCEE
Confidence 678888876 5667777 8999999999999977665 567999999999999976421 22357889999999
Q ss_pred ECccCCCcccCChhhhhcccccccEEEcccc-ccccc-CCccccCCCCCcEEEccCC-ccCCc-CChhhhccC-CCCEEE
Q 005760 80 SFSNNPLDGILPKTSVGNLSHSLEYFEMAYC-NVSGG-IPEEIGNLTNLTIIYLGGN-KLNGS-IPSTLGKLQ-KLQGLG 154 (678)
Q Consensus 80 ~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~-~L~~L~ 154 (678)
+|++|.+++..+.. +..++ +|++|+|++| .+++. ++..+.++++|++|++++| .+++. .+..+..++ +|++|+
T Consensus 124 ~L~~~~l~~~~~~~-l~~~~-~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 124 SLEGLRLSDPIVNT-LAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp ECTTCBCCHHHHHH-HTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred eCcCcccCHHHHHH-HhcCC-CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 99999998666554 55665 8999999999 67763 6777889999999999999 98854 567788999 999999
Q ss_pred ccCCc--CC-CCCCCcccCCCCccEEecCCCc-CCCCChhhhhccccccceeccccc-cccc-cccccccccccEEEecC
Q 005760 155 LENNK--LE-GSIPDSICHSDELYKLELGGNK-LSGSIPECFNNLASLRILLLGSNE-LTSI-PLTFWNLKDILYLNFSS 228 (678)
Q Consensus 155 L~~n~--i~-~~~~~~~~~l~~L~~L~l~~N~-i~~~~~~~~~~l~~L~~L~l~~N~-l~~l-~~~~~~l~~L~~L~l~~ 228 (678)
|++|. ++ +.++..+..+++|++|++++|. +++..+..+..+++|++|+|++|. ++.- ...+..+++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 99994 54 3456677889999999999999 777778889999999999999995 3321 12578899999999999
Q ss_pred CcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhc
Q 005760 229 NFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEK 275 (678)
Q Consensus 229 N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 275 (678)
| +. ...+..+. .+|+.|++++|++++..|..++.
T Consensus 282 ~-i~---~~~~~~l~---------~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 282 I-VP---DGTLQLLK---------EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp S-SC---TTCHHHHH---------HHSTTSEESCCCSCCTTCSSCSS
T ss_pred c-cC---HHHHHHHH---------hhCcceEEecccCccccCCcccc
Confidence 9 33 23333332 14778889999999988876554
No 345
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=2.3e-22 Score=194.96 Aligned_cols=178 Identities=23% Similarity=0.333 Sum_probs=135.9
Q ss_pred cEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceecccc
Q 005760 127 TIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSN 206 (678)
Q Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N 206 (678)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..+..|..+++|+.|+|++|.|++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46777777776 4455443 57788888888887666667777888888888888888777778888888888888888
Q ss_pred cccccccc-ccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecc
Q 005760 207 ELTSIPLT-FWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLS 285 (678)
Q Consensus 207 ~l~~l~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 285 (678)
+|+.+|.. |..+++|+.|+|++|+|++..+..|.+++ +|+.|+|++|+|++..+..+..+++|+.|+|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH----------NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC----------CCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 88888764 67788888888888888888788787776 89999999999998888888899999999999
Q ss_pred cccccccCCCCCccccccccccccCccccCCC
Q 005760 286 FNKLEGEIPRGGSFGNFSAESFEGNELLCGSP 317 (678)
Q Consensus 286 ~N~~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 317 (678)
+|+|.|++...+...++....+......|..|
T Consensus 161 ~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P 192 (220)
T 2v9t_B 161 QNPFICDCHLKWLADYLHTNPIETSGARCTSP 192 (220)
T ss_dssp SSCEECSGGGHHHHHHHHHCCCBCSCCBEEES
T ss_pred CCCcCCCCccHHHHHHHHhCCCCccCCCcCCc
Confidence 99999988765444444433334445556655
No 346
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=8e-23 Score=205.74 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=120.1
Q ss_pred HHHhhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccC------------------chhhhHHHHHHHHHhCCCc
Q 005760 387 LCRATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYG------------------RVFKSFDVECEMMKSIRHR 448 (678)
Q Consensus 387 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~e~~~l~~l~h~ 448 (678)
.......|.+.+.||+|+||.||+|...+|+.||+|+++.... .....+.+|+++++.++
T Consensus 85 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-- 162 (282)
T 1zar_A 85 LVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-- 162 (282)
T ss_dssp HHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--
Confidence 3444556777899999999999999887899999999864321 12456889999999998
Q ss_pred cceeeeeeeecCCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCC
Q 005760 449 NIIKVISSCSNEEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDN 528 (678)
Q Consensus 449 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~ 528 (678)
| +++.+++.. +..++||||+++++|.+ +.. .....++.|++.|+.||| +.+|+||||||+||+++ +
T Consensus 163 ~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~-~ 228 (282)
T 1zar_A 163 G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV-------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-E 228 (282)
T ss_dssp T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-T
T ss_pred C-CCcCeEEec-cceEEEEEecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-C
Confidence 4 666665543 55689999999999988 422 123469999999999999 99999999999999999 9
Q ss_pred CcEEEEeeccccccCCCCCcceeecccCCccccCccccCC
Q 005760 529 MVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKE 568 (678)
Q Consensus 529 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~ 568 (678)
+.+||+|||+++. +..+.|||++..
T Consensus 229 ~~vkl~DFG~a~~---------------~~~~~a~e~l~r 253 (282)
T 1zar_A 229 EGIWIIDFPQSVE---------------VGEEGWREILER 253 (282)
T ss_dssp TEEEECCCTTCEE---------------TTSTTHHHHHHH
T ss_pred CcEEEEECCCCeE---------------CCCCCHHHHHHH
Confidence 9999999999863 234678887643
No 347
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=4.5e-22 Score=192.93 Aligned_cols=178 Identities=23% Similarity=0.239 Sum_probs=122.0
Q ss_pred cEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCC-CcccCCCCccEEecCCCcCCCCChhhhhccccccceeccc
Q 005760 127 TIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIP-DSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGS 205 (678)
Q Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~ 205 (678)
+.+++++|.++ .+|..+. +.+++|+|++|.|++..+ ..|..+++|+.|+|++|.|++..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35666666665 3444332 345666777776664433 3466667777777777777766666677777777777777
Q ss_pred cccccccc-cccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceec
Q 005760 206 NELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNL 284 (678)
Q Consensus 206 N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 284 (678)
|+|+.++. .|..+++|+.|+|++|+|++..|..|.+++ +|+.|+|++|+|++..|..|..+++|+.|++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS----------SVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT----------TCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc----------cCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 77776655 467777777778888887777777777666 8888888888888887888888888999999
Q ss_pred ccccccccCCCCCccccccccccccCccccCCC
Q 005760 285 SFNKLEGEIPRGGSFGNFSAESFEGNELLCGSP 317 (678)
Q Consensus 285 ~~N~~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 317 (678)
++|+|.|+++..+...++.......+...|..|
T Consensus 161 ~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P 193 (220)
T 2v70_A 161 LANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKP 193 (220)
T ss_dssp CSCCEECSGGGHHHHHHHHHSCCBCCCCEEEES
T ss_pred cCcCCcCCCchHHHHHHHHhcCccccCCccCCC
Confidence 999998888765444444433333333456665
No 348
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.6e-21 Score=186.15 Aligned_cols=129 Identities=29% Similarity=0.367 Sum_probs=56.9
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCC
Q 005760 102 LEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGG 181 (678)
Q Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 181 (678)
|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 33333333333333333344445555555555555443334444445555555555555433333344444444444444
Q ss_pred CcCCCCChhhhhccccccceecccccccccccc-ccccccccEEEecCCc
Q 005760 182 NKLSGSIPECFNNLASLRILLLGSNELTSIPLT-FWNLKDILYLNFSSNF 230 (678)
Q Consensus 182 N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~l~~L~~L~l~~N~ 230 (678)
|.+++..+..|..+++|+.|+|++|+++.++.. +..+++|+.|++++|+
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 444444443444444444444444444444332 3334444444444443
No 349
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=8.4e-21 Score=192.39 Aligned_cols=189 Identities=22% Similarity=0.286 Sum_probs=118.8
Q ss_pred CCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccc
Q 005760 23 LSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSL 102 (678)
Q Consensus 23 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L 102 (678)
+..+.+..+.+++. ..+..+++|+.|++++|.+..++ .+..+++|+.|+|++|++++..+ +..++ +|
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~-------~~~~l~~L~~L~L~~n~l~~~~~---l~~l~-~L 92 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP---LANLK-NL 92 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG---GTTCT-TC
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccCh-------hHhcCCCCCEEEccCCccCCCcc---cccCC-CC
Confidence 44445555555533 22345566666666666665543 24556666666666666654432 33333 45
Q ss_pred cEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCC
Q 005760 103 EYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGN 182 (678)
Q Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N 182 (678)
++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|+|++|++++. ..+..+++|+.|++++|
T Consensus 93 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 93 GWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence 5555555555442 2366777777777777777643 4567777777777777777743 46777777777777777
Q ss_pred cCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccC
Q 005760 183 KLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTG 233 (678)
Q Consensus 183 ~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~ 233 (678)
.+++..+ +..+++|+.|+|++|.|+.++. +..+++|+.|++++|++..
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred ccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 7775544 7777777777777777777753 6677777777777777664
No 350
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=5.9e-21 Score=209.54 Aligned_cols=189 Identities=27% Similarity=0.378 Sum_probs=130.5
Q ss_pred CCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCC
Q 005760 46 NLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTN 125 (678)
Q Consensus 46 ~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (678)
+|+.|+|++|.++.++.. + .++|++|+|++|+|+.+ | . ...+|++|+|++|++++ +|. +.+ +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~------l--~~~L~~L~Ls~N~l~~i-p-~----~l~~L~~L~Ls~N~l~~-ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN------L--PPQITVLEITQNALISL-P-E----LPASLEYLDACDNRLST-LPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSCCSCCCSC------C--CTTCSEEECCSSCCSCC-C-C----CCTTCCEEECCSSCCSC-CCC-CCT--T
T ss_pred CccEEEeCCCCCCccCHh------H--cCCCCEEECcCCCCccc-c-c----ccCCCCEEEccCCCCCC-cch-hhc--C
Confidence 666666666666655432 1 25566666666666532 2 1 12366777777777666 444 444 7
Q ss_pred CcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccc
Q 005760 126 LTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGS 205 (678)
Q Consensus 126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~ 205 (678)
|+.|+|++|+|++ +|. .+++|++|+|++|.|++ +|. .+++|+.|+|++|.|++ +|. |. ++|+.|+|++
T Consensus 122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 8888888888875 444 56788888888888874 554 46778888888888885 454 55 7888888888
Q ss_pred cccccccccccccccc-------cEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccC
Q 005760 206 NELTSIPLTFWNLKDI-------LYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSY 278 (678)
Q Consensus 206 N~l~~l~~~~~~l~~L-------~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 278 (678)
|.|+.+|. +.. +| +.|+|++|+|+ .+|..+..++ +|+.|+|++|++++..|..+..+..
T Consensus 190 N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~----------~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 190 NLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD----------PTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC----------TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC----------CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 88888877 554 66 88999999888 4566665566 8999999999999888888877654
No 351
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.5e-20 Score=206.42 Aligned_cols=185 Identities=23% Similarity=0.330 Sum_probs=79.4
Q ss_pred CCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccccc
Q 005760 22 KLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHS 101 (678)
Q Consensus 22 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~ 101 (678)
+|+.|+|++|+|++ +|..+. ++|+.|+|++|.|+.++ . .+++|++|+|++|+|+++ |. + ..+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip-~--------~l~~L~~L~Ls~N~l~~i-p~--l---~~~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISLP-E--------LPASLEYLDACDNRLSTL-PE--L---PAS 121 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCCC-C--------CCTTCCEEECCSSCCSCC-CC--C---CTT
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcccc-c--------ccCCCCEEEccCCCCCCc-ch--h---hcC
Confidence 44445554444443 233221 34444455544444333 1 134444455554444432 21 1 114
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCC
Q 005760 102 LEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGG 181 (678)
Q Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 181 (678)
|++|+|++|++++ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++|.|++ +|. |. ++|+.|+|++
T Consensus 122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 4444555444444 222 34444444555444443 222 23444445555444442 333 32 4444455554
Q ss_pred CcCCCCChhhhhccccc-------cceeccccccccccccccccccccEEEecCCcccCCCCcccc
Q 005760 182 NKLSGSIPECFNNLASL-------RILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIG 240 (678)
Q Consensus 182 N~i~~~~~~~~~~l~~L-------~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 240 (678)
|.|+ .+|. |.. +| +.|+|++|+|+.+|..+..+++|+.|+|++|++++..|..+.
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 4444 2222 222 33 444454444444444444444444455555544444444433
No 352
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=5.2e-21 Score=200.41 Aligned_cols=163 Identities=25% Similarity=0.237 Sum_probs=88.6
Q ss_pred CcEEEccCCccCCcCChhhh-ccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceecc
Q 005760 126 LTIIYLGGNKLNGSIPSTLG-KLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLG 204 (678)
Q Consensus 126 L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~ 204 (678)
++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|..+++|++|+|++|.|+...+..|..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444433333343 44444444444444443333444444444444444444444444444445555555555
Q ss_pred cccccccc-ccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccC--CCc
Q 005760 205 SNELTSIP-LTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSY--LKD 281 (678)
Q Consensus 205 ~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~ 281 (678)
+|+|+.++ ..|.++++|+.|+|++|.|++..+..|.++ ..+++|+.|+|++|+|+...+..+..++. |+.
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG-------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTT
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc-------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcce
Confidence 55555442 245555555555555555554333333211 12338888888888888777777888776 478
Q ss_pred eecccccccccCCC
Q 005760 282 LNLSFNKLEGEIPR 295 (678)
Q Consensus 282 L~l~~N~~~~~~~~ 295 (678)
|+|++|+|.|+|..
T Consensus 194 l~l~~N~~~C~C~l 207 (361)
T 2xot_A 194 LYLHNNPLECDCKL 207 (361)
T ss_dssp EECCSSCEECCHHH
T ss_pred EEecCCCccCCcCc
Confidence 99999999988764
No 353
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=2.7e-20 Score=188.58 Aligned_cols=170 Identities=28% Similarity=0.372 Sum_probs=129.9
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
+|++|++++|.+... ..+..+++|++|+|++|++++..+ +..+++|++|+|++|.+++ ++ .+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 566666666666544 236778888888888888875443 7788888888888888873 33 47888888888888
Q ss_pred CCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEc
Q 005760 181 GNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNL 260 (678)
Q Consensus 181 ~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L 260 (678)
+|.+++. ..+..+++|+.|++++|+++.+ ..+..+++|+.|++++|.+++..+ +..++ +|+.|+|
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~----------~L~~L~L 185 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLT----------KLQNLYL 185 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCT----------TCCEEEC
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCC----------ccCEEEC
Confidence 8888854 4577888888888888888887 467888888888888888886554 55555 8999999
Q ss_pred cCCcCCCcchHHHhcccCCCceecccccccccC
Q 005760 261 SNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEI 293 (678)
Q Consensus 261 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 293 (678)
++|+|++. + .+..+++|+.|++++|+++...
T Consensus 186 ~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 186 SKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 99988864 3 3788889999999999887643
No 354
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.5e-20 Score=179.20 Aligned_cols=180 Identities=24% Similarity=0.271 Sum_probs=116.9
Q ss_pred CEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccccccc
Q 005760 24 SILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLE 103 (678)
Q Consensus 24 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~ 103 (678)
+.++++++.++. +|..+ .++|++|++++|.++.++.. .|..+++|++|++++|+++++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~-------------- 67 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNG-----VFDELTSLTQLYLGGNKLQSL-------------- 67 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTT-----TTTTCTTCSEEECCSSCCCCC--------------
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChh-----hhcccccCcEEECCCCccCcc--------------
Confidence 566777777763 34333 34677777777777665543 356666666666666666533
Q ss_pred EEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCc
Q 005760 104 YFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNK 183 (678)
Q Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~ 183 (678)
.+..|..+++|++|+|++|++++..+..|.++++|++|+|++|.|++..+..|..+++|++|++++|.
T Consensus 68 ------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 68 ------------PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp ------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 33445666777777777777765555566677777777777777775555556677777777777777
Q ss_pred CCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccc
Q 005760 184 LSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLK 243 (678)
Q Consensus 184 i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 243 (678)
+++..+..|..+++|+.|+|++|.+. ..+++|+.|+++.|.++|.+|..++.++
T Consensus 136 l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 136 LKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 77666666677777777777777554 2345677777777777777776665544
No 355
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=4.7e-21 Score=212.74 Aligned_cols=193 Identities=21% Similarity=0.277 Sum_probs=118.8
Q ss_pred CCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccccc
Q 005760 22 KLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHS 101 (678)
Q Consensus 22 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~ 101 (678)
++..+++..+.+....+ +..+++|+.|++++|.+..++ .|..+++|+.|+|++|++.++.+ +..++ +
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~-~ 88 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP---LTNLK-N 88 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT-------TGGGCTTCCEEECTTSCCCCCGG---GGGCT-T
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh-------HHccCCCCCEEEeeCCCCCCChh---hccCC-C
Confidence 34455555555554322 345566666666666665543 24556666666666666654433 33443 5
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCC
Q 005760 102 LEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGG 181 (678)
Q Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 181 (678)
|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.|++. ..+..+++|+.|+|++
T Consensus 89 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 89 LGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 55555555555542 2466677777777777777642 3466777777777777777643 4566777777777777
Q ss_pred CcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCC
Q 005760 182 NKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLP 236 (678)
Q Consensus 182 N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~ 236 (678)
|.|.+..| +..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|++.+...
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcc
Confidence 77775544 667777777777777777664 46667777777777777664433
No 356
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=2.1e-20 Score=207.55 Aligned_cols=189 Identities=23% Similarity=0.345 Sum_probs=164.3
Q ss_pred ccccCCcCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEEC
Q 005760 2 LQMWENNFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISF 81 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L 81 (678)
++++.+.+.+..+ +..+++|+.|+|++|.|... + .|..+++|+.|+|++|.+..++. |..+++|+.|+|
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~L 94 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-------LTNLKNLGWLFL 94 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-------GGGCTTCCEEEC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-------hccCCCCCEEEC
Confidence 3566777775555 57789999999999999954 3 69999999999999999998763 789999999999
Q ss_pred ccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCC
Q 005760 82 SNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLE 161 (678)
Q Consensus 82 ~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~ 161 (678)
++|.+.++. .+..++ +|++|+|++|++.+. ..+..+++|+.|+|++|++++. ..|..+++|+.|+|++|.|+
T Consensus 95 s~N~l~~l~---~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 95 DENKIKDLS---SLKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CSSCCCCCT---TSTTCT-TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred cCCCCCCCh---hhccCC-CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 999998653 366676 899999999999974 5689999999999999999965 67999999999999999999
Q ss_pred CCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc
Q 005760 162 GSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL 213 (678)
Q Consensus 162 ~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~ 213 (678)
+..| +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.++..|.
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 6655 99999999999999999965 458999999999999999998765
No 357
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.8e-20 Score=196.21 Aligned_cols=156 Identities=24% Similarity=0.240 Sum_probs=109.4
Q ss_pred cccEEEcccccccccCCcccc-CCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEec
Q 005760 101 SLEYFEMAYCNVSGGIPEEIG-NLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLEL 179 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 179 (678)
.++.|+|++|++++..+..|. ++++|+.|+|++|+|+++.+.+|.++++|++|+|++|+|+...+..|..+++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 455555555555555555565 6777777777777777666667777777777777777777555666777777777777
Q ss_pred CCCcCCCCChhhhhccccccceecccccccccccc-c---cccccccEEEecCCcccCCCCccccccccccccccCccc-
Q 005760 180 GGNKLSGSIPECFNNLASLRILLLGSNELTSIPLT-F---WNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLIS- 254 (678)
Q Consensus 180 ~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~-~---~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~- 254 (678)
++|.|+...+..|.++++|+.|+|++|+|+.+|.. | ..+++|+.|+|++|+|+...+..+..++ +
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~----------~~ 189 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP----------AW 189 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC----------HH
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc----------Hh
Confidence 77777766677777777777777777777777664 3 4577788888888888766556665554 4
Q ss_pred -ccEEEccCCcCC
Q 005760 255 -LISLNLSNNNLS 266 (678)
Q Consensus 255 -L~~L~L~~N~l~ 266 (678)
|+.|+|++|.+.
T Consensus 190 ~l~~l~l~~N~~~ 202 (361)
T 2xot_A 190 VKNGLYLHNNPLE 202 (361)
T ss_dssp HHTTEECCSSCEE
T ss_pred hcceEEecCCCcc
Confidence 477888888876
No 358
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=8.5e-20 Score=178.10 Aligned_cols=136 Identities=30% Similarity=0.335 Sum_probs=70.7
Q ss_pred CCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEe
Q 005760 148 QKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNF 226 (678)
Q Consensus 148 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l 226 (678)
++|++|+|++|.|++..|..|..+++|++|+|++|.|+...+..|..+++|+.|+|++|+|+.++. .|..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 444444444444444334444444444444444444443333444444444444444444444433 2344555555555
Q ss_pred cCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCC
Q 005760 227 SSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIP 294 (678)
Q Consensus 227 ~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 294 (678)
++|+|+ .+|..+.+++ +|+.|+|++|+|++..+..+..+++|+.|++++|+|.|.++
T Consensus 120 s~N~l~-~lp~~~~~l~----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLT----------HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCT----------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCC----------CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 555554 3344444333 66666666666665555556666667777777777776665
No 359
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=4e-22 Score=223.81 Aligned_cols=133 Identities=14% Similarity=0.055 Sum_probs=75.3
Q ss_pred CCCccEEecCCCcCCCCChhhhhc-cccccceecc----cccccccc------ccccccccccEEEecCCc--ccCCCCc
Q 005760 171 SDELYKLELGGNKLSGSIPECFNN-LASLRILLLG----SNELTSIP------LTFWNLKDILYLNFSSNF--FTGPLPL 237 (678)
Q Consensus 171 l~~L~~L~l~~N~i~~~~~~~~~~-l~~L~~L~l~----~N~l~~l~------~~~~~l~~L~~L~l~~N~--l~~~~~~ 237 (678)
+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.++..| ..+.++++|+.|++++|. +++....
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 455555555555555444444433 5555555553 44454322 224445555555554322 3322222
Q ss_pred cccccccccccccCcccccEEEccCCcCCCc-chHHHhcccCCCceeccccccccc-CCCC-CccccccccccccCcc
Q 005760 238 EIGNLKIARIDSCDLISLISLNLSNNNLSGA-IPASLEKLSYLKDLNLSFNKLEGE-IPRG-GSFGNFSAESFEGNEL 312 (678)
Q Consensus 238 ~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~-~~~~-~~~~~l~~~~~~~n~~ 312 (678)
.+. ..+++|+.|+|++|++++. .+..+..+++|++|++++|+++.. ++.. ..+++++.+++++|..
T Consensus 457 ~~~---------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 457 YIG---------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHH---------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHH---------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 211 1245889999998888763 345557788899999999987543 2222 3467788888888873
No 360
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=4.4e-19 Score=173.04 Aligned_cols=155 Identities=24% Similarity=0.260 Sum_probs=120.6
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCC
Q 005760 102 LEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGG 181 (678)
Q Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 181 (678)
-+.++.++++++. +|..+ .++|++|+|++|++++..|..|.++++|++|+|++|+|+...+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4556666666653 33333 27788888888888877777888888888888888888755556678888888888888
Q ss_pred CcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEcc
Q 005760 182 NKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLS 261 (678)
Q Consensus 182 N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~ 261 (678)
|.|++..+..|..+++|+.|+|++|+|+.+|..+..+++|+.|+|++|+|++..+..|..++ +|+.|+|+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~----------~L~~L~l~ 167 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS----------SLTHAYLF 167 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT----------TCCEEECT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCC----------CCCEEEee
Confidence 88887777778888888888888888888888888888888888888888877766676666 88999999
Q ss_pred CCcCCCcc
Q 005760 262 NNNLSGAI 269 (678)
Q Consensus 262 ~N~l~~~~ 269 (678)
+|.++...
T Consensus 168 ~N~~~c~c 175 (229)
T 3e6j_A 168 GNPWDCEC 175 (229)
T ss_dssp TSCBCTTB
T ss_pred CCCccCCc
Confidence 99887543
No 361
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=174.91 Aligned_cols=114 Identities=25% Similarity=0.309 Sum_probs=68.4
Q ss_pred ccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhcccccc
Q 005760 120 IGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLR 199 (678)
Q Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~ 199 (678)
|..+++|++|+|++|+|+++.+..|.++++|++|+|++|.|++..+..|..+++|++|+|++|.|++..|..|..+++|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 45555666666666666555555556666666666666666544445555666666666666666655555666666666
Q ss_pred ceeccccccccc-cccccccccccEEEecCCcccC
Q 005760 200 ILLLGSNELTSI-PLTFWNLKDILYLNFSSNFFTG 233 (678)
Q Consensus 200 ~L~l~~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~ 233 (678)
.|+|++|+|+.+ |..|..+++|+.|+|++|++..
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 666666666655 3456666666666666666653
No 362
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2e-19 Score=174.28 Aligned_cols=132 Identities=23% Similarity=0.265 Sum_probs=87.4
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
+|++|+|++|++++..+..|.++++|++|+|++|+++++.|..|.++++|++|+|++|+|+...+..|.++++|++|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 45555555555555555566677777777777777776667777777777777777777775445556667777777777
Q ss_pred CCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCCccc
Q 005760 181 GNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 181 ~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~ 232 (678)
+|.|++..+..|..+++|+.|+|++|+|+.++. .|..+++|+.|+|++|++.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777776666667767777777777776666654 3555666666666666554
No 363
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=5.2e-22 Score=219.12 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=89.1
Q ss_pred CCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecC
Q 005760 149 KLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSS 228 (678)
Q Consensus 149 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~ 228 (678)
.|+.|+|++|.|++ +|. |..+++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|+|+.+| .+..+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 47777777777773 554 777777777777777777 66677777777777777777777777 677777788888888
Q ss_pred CcccCCC-CccccccccccccccCcccccEEEccCCcCCCcch---HHHhcccCCCceec
Q 005760 229 NFFTGPL-PLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIP---ASLEKLSYLKDLNL 284 (678)
Q Consensus 229 N~l~~~~-~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l 284 (678)
|.|++.. |..+.+++ +|+.|+|++|++++..| ..+..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~----------~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCP----------RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCT----------TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCC----------CCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8777666 77776666 78888888887776544 23445777777754
No 364
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=2.5e-20 Score=209.07 Aligned_cols=279 Identities=12% Similarity=0.026 Sum_probs=193.6
Q ss_pred ccccCCcCc----ccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCc----------------
Q 005760 2 LQMWENNFS----GTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSST---------------- 61 (678)
Q Consensus 2 L~l~~~~~~----~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~---------------- 61 (678)
|++++|.++ +.++..+.++++|++|+|++|.+.+ .+..+.++++|++|+++.+......
T Consensus 197 L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L 275 (592)
T 3ogk_B 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275 (592)
T ss_dssp EECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEE
T ss_pred EEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccccc
Confidence 678888886 4556666778999999999998875 4566777777777777642211000
Q ss_pred -----cchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEcc----
Q 005760 62 -----LELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLG---- 132 (678)
Q Consensus 62 -----~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---- 132 (678)
....++..+..+++|++|+|++|.+++......+..++ +|++|+++++-..+.++..+..+++|++|+++
T Consensus 276 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~-~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~ 354 (592)
T 3ogk_B 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP-NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354 (592)
T ss_dssp EETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT-TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCC
T ss_pred CccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc-CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcc
Confidence 00012233566788888888888876544333344555 78888888333333344445678899999999
Q ss_pred -------CCccCCcCCh-hhhccCCCCEEEccCCcCCCCCCCcccC-CCCccEEecC----CCcCCCC-----Chhhhhc
Q 005760 133 -------GNKLNGSIPS-TLGKLQKLQGLGLENNKLEGSIPDSICH-SDELYKLELG----GNKLSGS-----IPECFNN 194 (678)
Q Consensus 133 -------~N~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~----~N~i~~~-----~~~~~~~ 194 (678)
.|.+++.... .+..+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~ 434 (592)
T 3ogk_B 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434 (592)
T ss_dssp SSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH
T ss_pred ccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh
Confidence 3566533222 2456899999999999998665556655 8999999996 7788864 3344778
Q ss_pred cccccceeccccc--ccc-ccccc-cccccccEEEecCCcccCCC-CccccccccccccccCcccccEEEccCCcCCCcc
Q 005760 195 LASLRILLLGSNE--LTS-IPLTF-WNLKDILYLNFSSNFFTGPL-PLEIGNLKIARIDSCDLISLISLNLSNNNLSGAI 269 (678)
Q Consensus 195 l~~L~~L~l~~N~--l~~-l~~~~-~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~ 269 (678)
+++|+.|++++|. ++. ....+ ..+++|+.|++++|.+++.. +..+.+++ +|++|+|++|.+++..
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~----------~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP----------NLQKLEMRGCCFSERA 504 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT----------TCCEEEEESCCCBHHH
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc----------ccCeeeccCCCCcHHH
Confidence 9999999998543 553 22233 34789999999999987533 22234444 9999999999987553
Q ss_pred -hHHHhcccCCCceeccccccccc
Q 005760 270 -PASLEKLSYLKDLNLSFNKLEGE 292 (678)
Q Consensus 270 -~~~~~~l~~L~~L~l~~N~~~~~ 292 (678)
+..+..+++|+.|++++|+++..
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhcCccCeeECcCCcCCHH
Confidence 34456799999999999998754
No 365
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=4.3e-19 Score=176.88 Aligned_cols=172 Identities=20% Similarity=0.309 Sum_probs=108.0
Q ss_pred CCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccc
Q 005760 20 ASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLS 99 (678)
Q Consensus 20 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 99 (678)
+.+++.+++++|.++... .+..+++|+.|++++|.+++++ .+..+++|+.|+|++|+++++.+ +..++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~L~~N~i~~~~~---l~~l~ 85 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-------GMQFFTNLKELHLSHNQISDLSP---LKDLT 85 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG---GTTCS
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-------HHhhCCCCCEEECCCCccCCChh---hccCC
Confidence 445556666666666432 4556666666666666665544 24556666666666666655433 44444
Q ss_pred ccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEec
Q 005760 100 HSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLEL 179 (678)
Q Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 179 (678)
+|++|+|++|++++..+ +.. ++|+.|+|++|++++. ..+..+++|++|+|++|+|++ ++ .+..+++|+.|++
T Consensus 86 -~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 86 -KLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDL 157 (263)
T ss_dssp -SCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEEC
T ss_pred -CCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEEC
Confidence 56666666666665322 222 6777777777777643 346777777777777777773 33 5677777777777
Q ss_pred CCCcCCCCChhhhhccccccceeccccccccccc
Q 005760 180 GGNKLSGSIPECFNNLASLRILLLGSNELTSIPL 213 (678)
Q Consensus 180 ~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~ 213 (678)
++|.+++. ..+..+++|+.|++++|.++..|.
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 77777755 556777777777777777776554
No 366
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=7.4e-22 Score=217.91 Aligned_cols=206 Identities=20% Similarity=0.191 Sum_probs=158.3
Q ss_pred cCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCcc-------------CCCCccchhhcccccCCCCCcEEE-Ccc
Q 005760 18 FNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNY-------------LTSSTLELSFLSSLSNCKSLTLIS-FSN 83 (678)
Q Consensus 18 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~~~~~~l~~L~~L~-L~~ 83 (678)
...++|+.|+|++|+++ .+|..++++++|+.|++++|. +... .+..+..+++|+.|+ ++.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-----~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-----EKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-----HHHHHHHHHHHHHHCGGGH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-----CHHHHHHHHhcccCcchhh
Confidence 56889999999999998 779999999999999998875 1111 123466777788887 666
Q ss_pred CCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCC
Q 005760 84 NPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGS 163 (678)
Q Consensus 84 n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 163 (678)
|.+. .|+.+.+++|.+....+ ..|+.|+|++|+|++ +|. |+.+++|++|+|++|.|+ .
T Consensus 420 n~~~-------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 420 AYLD-------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp HHHH-------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred cccc-------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence 6543 45666677777665322 248889999998885 565 888889999999999988 7
Q ss_pred CCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccc--cccccccccccEEEecCCcccCCCCccccc
Q 005760 164 IPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSI--PLTFWNLKDILYLNFSSNFFTGPLPLEIGN 241 (678)
Q Consensus 164 ~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 241 (678)
+|..|..+++|+.|+|++|.|++ +| .+..+++|+.|+|++|+|+.+ |..+..+++|+.|+|++|++++..+... .
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~-~ 554 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE-R 554 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT-H
T ss_pred cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH-H
Confidence 78888889999999999999886 56 788888999999999999887 7788889999999999998886655321 1
Q ss_pred cccccccccCcccccEEEc
Q 005760 242 LKIARIDSCDLISLISLNL 260 (678)
Q Consensus 242 l~~~~~~~~~~~~L~~L~L 260 (678)
+. ..+|+|+.|+|
T Consensus 555 l~------~~lp~L~~L~l 567 (567)
T 1dce_A 555 LA------EMLPSVSSILT 567 (567)
T ss_dssp HH------HHCTTCSEEEC
T ss_pred HH------HHCcccCccCC
Confidence 11 13458888875
No 367
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=7.8e-19 Score=167.09 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=75.4
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
+|++|++++|.+.. +| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 45555555555552 22 3556666666666666554 22356666666666666666665455566666666666666
Q ss_pred CCcCCCCChhhhhccccccceeccccc-cccccccccccccccEEEecCCccc
Q 005760 181 GNKLSGSIPECFNNLASLRILLLGSNE-LTSIPLTFWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 181 ~N~i~~~~~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~l~~L~~L~l~~N~l~ 232 (678)
+|.+++..+..+..+++|++|+|++|. ++.+| .+..+++|+.|++++|.++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 666665555666666666666666665 55555 4555555566666555555
No 368
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=2.1e-19 Score=179.14 Aligned_cols=169 Identities=20% Similarity=0.260 Sum_probs=114.8
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
.+..+++++|.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|+|++|+|++..+ +..+++|+.|+|+
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3455556666655443 35667777777777777763 33 56677777777777777774333 6777777777777
Q ss_pred CCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEc
Q 005760 181 GNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNL 260 (678)
Q Consensus 181 ~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L 260 (678)
+|++++. +. +.. ++|+.|+|++|+|+.++ .+..+++|+.|++++|++++. + .+..++ +|+.|+|
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~----------~L~~L~L 157 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLS----------KLEVLDL 157 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCT----------TCCEEEC
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCC----------CCCEEEC
Confidence 7777743 22 222 67777777777777765 467777778888888877754 2 344444 7888888
Q ss_pred cCCcCCCcchHHHhcccCCCceecccccccccC
Q 005760 261 SNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEI 293 (678)
Q Consensus 261 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 293 (678)
++|++++. ..+..+++|+.|++++|++++.+
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 88888765 56777888888888888887664
No 369
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=2.4e-19 Score=169.71 Aligned_cols=129 Identities=30% Similarity=0.405 Sum_probs=86.2
Q ss_pred cEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCC-cccCCCCccEEecCCCcCCCCChhhhhccccccceeccc
Q 005760 127 TIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPD-SICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGS 205 (678)
Q Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~ 205 (678)
+.+++++|+++ .+|..+. ++|++|+|++|.|++..+. .|..+++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67788888876 4555443 3777888888887755443 367777777777777777777677777777777777777
Q ss_pred cccccccc-cccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCc
Q 005760 206 NELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGA 268 (678)
Q Consensus 206 N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~ 268 (678)
|+|+.++. .|..+++|+.|+|++|++++..|..|..++ +|+.|+|++|+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~----------~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN----------SLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT----------TCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC----------CCCEEEeCCCCccCc
Confidence 77776654 366666666666666666655555555544 666666666665543
No 370
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.4e-18 Score=165.37 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=103.4
Q ss_pred cCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCcccc
Q 005760 42 GNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIG 121 (678)
Q Consensus 42 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~ 121 (678)
..+++|+.|++++|.+.+++ .+..+++|++|++++|.+.... .+..++ +|++|++++|++++..+..|.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~l~~n~~~~~~---~l~~l~-~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-------GIEYAHNIKDLTINNIHATNYN---PISGLS-NLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-------TGGGCTTCSEEEEESCCCSCCG---GGTTCT-TCCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCccChH-------HHhcCCCCCEEEccCCCCCcch---hhhcCC-CCCEEEeECCccCcccChhhc
Confidence 44555666666666665444 1445556666666666544321 244444 566666666666666666777
Q ss_pred CCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCc-CCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccc
Q 005760 122 NLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNK-LEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRI 200 (678)
Q Consensus 122 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~ 200 (678)
.+++|++|++++|++++..+..+..+++|++|+|++|. ++ .++ .+..+++|+.|++++|.+++. + .+..+++|+.
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~ 185 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQ 185 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCE
Confidence 88888888888888876677778888888888888887 66 444 678888888888888888854 3 6778888888
Q ss_pred eecccccccc
Q 005760 201 LLLGSNELTS 210 (678)
Q Consensus 201 L~l~~N~l~~ 210 (678)
|++++|++..
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 8888887753
No 371
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=8.9e-19 Score=165.80 Aligned_cols=154 Identities=25% Similarity=0.311 Sum_probs=103.2
Q ss_pred CEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCC
Q 005760 151 QGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSN 229 (678)
Q Consensus 151 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N 229 (678)
+.+++++|.++ .+|..+. ++|++|++++|.|+ .+|..|..+++|+.|+|++|+|+.++. .|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555555 3443332 35566666666665 444556666666666666666666644 4666677777777777
Q ss_pred cccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCcccccccccccc
Q 005760 230 FFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAESFEG 309 (678)
Q Consensus 230 ~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~~~~ 309 (678)
+|++..+..|.+++ +|+.|+|++|+|+...+..|..+++|+.|++++|+|.|+|...+...++.......
T Consensus 89 ~l~~i~~~~f~~l~----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~ 158 (193)
T 2wfh_A 89 RLRCIPPRTFDGLK----------SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEP 158 (193)
T ss_dssp CCCBCCTTTTTTCT----------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCC
T ss_pred ccCEeCHHHhCCCC----------CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCC
Confidence 77766666676666 88888888888887777788889999999999999999988665555554444444
Q ss_pred CccccCCCC
Q 005760 310 NELLCGSPN 318 (678)
Q Consensus 310 n~~~c~~~~ 318 (678)
+...|..|.
T Consensus 159 ~~~~C~~P~ 167 (193)
T 2wfh_A 159 GIARCAGPG 167 (193)
T ss_dssp SCCBEEESG
T ss_pred CCcCcCCch
Confidence 556677664
No 372
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=4.4e-20 Score=207.22 Aligned_cols=307 Identities=13% Similarity=0.082 Sum_probs=160.5
Q ss_pred ccccCCcCcccCCcccc-CCCCCCEEecCCC-ccccc-CCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcE
Q 005760 2 LQMWENNFSGTIPRFIF-NASKLSILELSDN-SFSGF-IPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTL 78 (678)
Q Consensus 2 L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~ 78 (678)
|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.++...... +..-...+++|+.
T Consensus 110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~-l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW-LSHFPDTYTSLVS 188 (594)
T ss_dssp EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG-GGGSCTTCCCCCE
T ss_pred EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH-HHHHhhcCCcCcE
Confidence 67777777766666665 5778888888877 55432 3344446777888888877766544220 1111235667777
Q ss_pred EECccCC--CcccCChhhhhcccccccEEEccccc---------------------------------------------
Q 005760 79 ISFSNNP--LDGILPKTSVGNLSHSLEYFEMAYCN--------------------------------------------- 111 (678)
Q Consensus 79 L~L~~n~--i~~~~~~~~~~~l~~~L~~L~l~~n~--------------------------------------------- 111 (678)
|++++|. +........+..++ +|++|++++|.
T Consensus 189 L~l~~~~~~~~~~~l~~l~~~~~-~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L 267 (594)
T 2p1m_B 189 LNISCLASEVSFSALERLVTRCP-NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267 (594)
T ss_dssp EECTTCCSCCCHHHHHHHHHHCT-TCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTC
T ss_pred EEecccCCcCCHHHHHHHHHhCC-CCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCc
Confidence 7777765 21111111111222 56666666651
Q ss_pred -----ccc----cCCccccCCCCCcEEEccCCccCCcCCh-hhhccCCCCEEEccCCcCCCC-CCCcccCCCCccEEecC
Q 005760 112 -----VSG----GIPEEIGNLTNLTIIYLGGNKLNGSIPS-TLGKLQKLQGLGLENNKLEGS-IPDSICHSDELYKLELG 180 (678)
Q Consensus 112 -----l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~ 180 (678)
+.. .++..+..+++|++|+|++|.+++.... .+..+++|++|++++| ++.. ++.....+++|++|+++
T Consensus 268 ~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp CEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 110 1122223567888888888886533222 2456778888888777 4311 11222246667777662
Q ss_pred ---------CCcCCCCChhhhh-ccccccceecccccccccc-ccc-cccccccEEEec--C----CcccCCCCc-c---
Q 005760 181 ---------GNKLSGSIPECFN-NLASLRILLLGSNELTSIP-LTF-WNLKDILYLNFS--S----NFFTGPLPL-E--- 238 (678)
Q Consensus 181 ---------~N~i~~~~~~~~~-~l~~L~~L~l~~N~l~~l~-~~~-~~l~~L~~L~l~--~----N~l~~~~~~-~--- 238 (678)
.|.+++.....+. .+++|+.|.++.|.++... ..+ ..+++|+.|+++ + |.++..... .
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 2344432222232 3666666666666665321 122 245666666666 3 333321110 0
Q ss_pred -ccc---cccccccc-----------cCcccccEEEccCCcCCCcchHHH-hcccCCCceecccccccccCC--CCCccc
Q 005760 239 -IGN---LKIARIDS-----------CDLISLISLNLSNNNLSGAIPASL-EKLSYLKDLNLSFNKLEGEIP--RGGSFG 300 (678)
Q Consensus 239 -~~~---l~~~~~~~-----------~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~~~~~~--~~~~~~ 300 (678)
+.+ ++..++.. ..+++|+.|+|++|.+++.....+ ..+++|+.|++++|+++.... ....++
T Consensus 427 l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 111 11000000 014467777777777765555444 556777777777777643221 113356
Q ss_pred cccccccccCc
Q 005760 301 NFSAESFEGNE 311 (678)
Q Consensus 301 ~l~~~~~~~n~ 311 (678)
+|+.+++.+|+
T Consensus 507 ~L~~L~l~~~~ 517 (594)
T 2p1m_B 507 TMRSLWMSSCS 517 (594)
T ss_dssp GSSEEEEESSC
T ss_pred CCCEEeeeCCC
Confidence 66666666654
No 373
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=1.7e-19 Score=186.42 Aligned_cols=239 Identities=13% Similarity=0.062 Sum_probs=123.0
Q ss_pred CCCCCEEecCCCcccccCCccccC-CCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhc-
Q 005760 20 ASKLSILELSDNSFSGFIPNTFGN-LRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGN- 97 (678)
Q Consensus 20 l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~- 97 (678)
+.++++|.++++ +.......+.. +++|+.|||++|++....... ..++.+..+.+..|.| |...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~------~~~~~~~~~~~~~~~I----~~~aF~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA------GTYPNGKFYIYMANFV----PAYAFSNV 92 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS------SSSGGGCCEEECTTEE----CTTTTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc------cccccccccccccccc----CHHHhccc
Confidence 567888888865 22222223333 788888888888887221110 0111133333333322 1122333
Q ss_pred -------ccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcC----CCCCCC
Q 005760 98 -------LSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKL----EGSIPD 166 (678)
Q Consensus 98 -------l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i----~~~~~~ 166 (678)
+. +|++|+|.+ +++.+.+.+|.++++|+.|++++|.+..+.+.+|.++.++..+.+..+.. ......
T Consensus 93 ~~~~~~g~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 93 VNGVTKGKQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp ETTEEEECT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred ccccccccC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 33 555555555 55555555555555555555555555545555555544444444433211 101111
Q ss_pred ccc--------------------------------------------------CCCCccEEecCCCcCCCCChhhhhccc
Q 005760 167 SIC--------------------------------------------------HSDELYKLELGGNKLSGSIPECFNNLA 196 (678)
Q Consensus 167 ~~~--------------------------------------------------~l~~L~~L~l~~N~i~~~~~~~~~~l~ 196 (678)
+|. .+++|+.|+|++|.++.+.+.+|.+++
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 121 145566666666666555555566666
Q ss_pred cccceeccccccccccc-ccccccccc-EEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHh
Q 005760 197 SLRILLLGSNELTSIPL-TFWNLKDIL-YLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLE 274 (678)
Q Consensus 197 ~L~~L~l~~N~l~~l~~-~~~~l~~L~-~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~ 274 (678)
+|+.|+|++| ++.++. +|.++++|+ .+++.+ .++.+.+..|.+++ +|+.|+|++|+++.+.+.+|.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~----------~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD----------NLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT----------TEEEEEECSSCCCEECTTTTC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc----------cCCEEEeCCCccCccchhhhc
Confidence 6666666655 555544 455666665 666655 44444455555544 666666666666555555666
Q ss_pred cccCCCcee
Q 005760 275 KLSYLKDLN 283 (678)
Q Consensus 275 ~l~~L~~L~ 283 (678)
++++|+.|+
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 666665554
No 374
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=2.3e-19 Score=201.31 Aligned_cols=133 Identities=15% Similarity=0.055 Sum_probs=78.4
Q ss_pred cCCCCEEEccCCcCCCCCCCccc-CCCCccEEecC--C----CcCCCCCh-----hhhhccccccceeccccccccc-cc
Q 005760 147 LQKLQGLGLENNKLEGSIPDSIC-HSDELYKLELG--G----NKLSGSIP-----ECFNNLASLRILLLGSNELTSI-PL 213 (678)
Q Consensus 147 l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~--~----N~i~~~~~-----~~~~~l~~L~~L~l~~N~l~~l-~~ 213 (678)
+++|++|.++.|.+++.....+. .+++|+.|+++ + |.+++... ..+..+++|+.|+|++ .++.. ..
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 44555555544554432222232 35666666666 3 34442211 1244556666666655 34421 22
Q ss_pred cccc-cccccEEEecCCcccCCCCccc-cccccccccccCcccccEEEccCCcCCCcchH-HHhcccCCCceeccccccc
Q 005760 214 TFWN-LKDILYLNFSSNFFTGPLPLEI-GNLKIARIDSCDLISLISLNLSNNNLSGAIPA-SLEKLSYLKDLNLSFNKLE 290 (678)
Q Consensus 214 ~~~~-l~~L~~L~l~~N~l~~~~~~~~-~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 290 (678)
.+.. +++|+.|+|++|.+++.....+ .+ +++|+.|+|++|.+++.... ....+++|+.|++++|+++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~----------~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSG----------CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHH----------CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhc----------CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 3333 6778888888887764443333 22 45999999999999755444 3455899999999999984
No 375
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=2e-18 Score=196.44 Aligned_cols=133 Identities=25% Similarity=0.326 Sum_probs=75.7
Q ss_pred cccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecC
Q 005760 101 SLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELG 180 (678)
Q Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 180 (678)
.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|+++++|++|+|++|.|+ .+|..|..+++|++|+|+
T Consensus 225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 4555555555544 33444446666666666666665 55566666666666666666666 556666666666666666
Q ss_pred CCcCCCCChhhhhccccccceeccccccccc-cccccccc-cccEEEecCCcccCCCCc
Q 005760 181 GNKLSGSIPECFNNLASLRILLLGSNELTSI-PLTFWNLK-DILYLNFSSNFFTGPLPL 237 (678)
Q Consensus 181 ~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~-~L~~L~l~~N~l~~~~~~ 237 (678)
+|.|+ .+|..|..+++|+.|+|++|.|+.. |..+..+. .+..|+|++|.+++..|.
T Consensus 302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66665 4455566666666666666666643 33333322 122355666666655544
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.3e-17 Score=157.82 Aligned_cols=127 Identities=28% Similarity=0.407 Sum_probs=61.9
Q ss_pred cEEEcccccccccCCccccCCCCCcEEEccCCccCCcCCh-hhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCC
Q 005760 103 EYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPS-TLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGG 181 (678)
Q Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 181 (678)
+++++++|+++. +|..+. .+|++|++++|++++..+. .|..+++|++|+|++|.|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 345555555532 232221 2455555555555433332 244555555555555555544445555555555555555
Q ss_pred CcCCCCChhhhhccccccceeccccccccc-cccccccccccEEEecCCccc
Q 005760 182 NKLSGSIPECFNNLASLRILLLGSNELTSI-PLTFWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 182 N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~l~~L~~L~l~~N~l~ 232 (678)
|+|++..+..|.++++|++|+|++|+|+.+ |..|..+++|+.|+|++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555544444455555555555555555544 334445555555555555544
No 377
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.73 E-value=9e-19 Score=174.00 Aligned_cols=137 Identities=22% Similarity=0.285 Sum_probs=105.7
Q ss_pred CCCCccccCCCceeEEEEEe-CCCcE--EEEEEeecccCc------------------------hhhhHHHHHHHHHhCC
Q 005760 394 FSENNLIGRGSFGSVFKARL-GDGME--VAMKVFNLQYGR------------------------VFKSFDVECEMMKSIR 446 (678)
Q Consensus 394 ~~~~~~ig~G~~g~V~~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~e~~~l~~l~ 446 (678)
|.+.+.||+|+||.||+|.. .+|+. ||||+++..... ....+.+|+.+++.++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999987 68889 999997543111 0125788999999998
Q ss_pred Cccc--eeeeeeeecCCeEEEEEEecCC-C----CHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCC
Q 005760 447 HRNI--IKVISSCSNEEFKALVLEYMPH-G----SLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLK 519 (678)
Q Consensus 447 h~ni--v~~~~~~~~~~~~~lv~e~~~~-~----~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~ 519 (678)
|+++ ..++++ +..++||||+.+ | +|.++... .++..+..++.|++.|+.|||. +.+|+|||||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlk 198 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQ--EAELVHADLS 198 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCS
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCC
Confidence 8764 333332 356899999942 3 67766543 1234567899999999999994 5789999999
Q ss_pred CCCeeecCCCcEEEEeecccccc
Q 005760 520 PSNVLLDDNMVAHLSDFGIAKLL 542 (678)
Q Consensus 520 ~~Nill~~~~~~kl~Dfg~~~~~ 542 (678)
|+|||++. .++|+|||+|...
T Consensus 199 p~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 199 EYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp TTSEEESS--SEEECCCTTCEET
T ss_pred HHHEEEcC--cEEEEECcccccC
Confidence 99999998 9999999999754
No 378
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=4.9e-18 Score=193.31 Aligned_cols=192 Identities=19% Similarity=0.224 Sum_probs=119.1
Q ss_pred CCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccc----hhhcccccCCCCCcEEECccCCCcccCChhhh
Q 005760 20 ASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLE----LSFLSSLSNCKSLTLISFSNNPLDGILPKTSV 95 (678)
Q Consensus 20 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 95 (678)
.+.++.|+|.+|.+... +..+ |+.++|+.|.|..+... ......|..+++|+.|+|++|.+.. .+.. +
T Consensus 172 ~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~-~ 243 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISAN-I 243 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCSC-CCGG-G
T ss_pred CCccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChh-h
Confidence 35688999999999853 3333 33344444444332210 0112357889999999999999984 4444 4
Q ss_pred hcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCcc
Q 005760 96 GNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELY 175 (678)
Q Consensus 96 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 175 (678)
..++ +|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|+++++|++|+|++|.|+ .+|..|..+++|+
T Consensus 244 ~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 244 FKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319 (727)
T ss_dssp GGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCC
T ss_pred cCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCcc
Confidence 4666 8999999999999 78899999999999999999999 77999999999999999999998 7788899999999
Q ss_pred EEecCCCcCCCCChhhhhcccc-ccceecccccccc-ccccccccccccEEEecCC
Q 005760 176 KLELGGNKLSGSIPECFNNLAS-LRILLLGSNELTS-IPLTFWNLKDILYLNFSSN 229 (678)
Q Consensus 176 ~L~l~~N~i~~~~~~~~~~l~~-L~~L~l~~N~l~~-l~~~~~~l~~L~~L~l~~N 229 (678)
+|+|++|.|++.+|..+..+.. +..|+|++|.++. +|. .|..|+++.|
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 9999999999999988876543 3458899999884 343 5677778877
No 379
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=1.3e-16 Score=168.47 Aligned_cols=239 Identities=10% Similarity=0.111 Sum_probs=117.2
Q ss_pred CCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccccc
Q 005760 22 KLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHS 101 (678)
Q Consensus 22 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~ 101 (678)
+|+.+.|..+ ++.+...+|.+ .+|+.+.|.+ .+..++.. +|.+|++|+.+++++|+++.+.... |.. .+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~-----aF~~c~~L~~l~l~~n~l~~I~~~a-F~~--~~ 204 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKED-----IFYYCYNLKKADLSKTKITKLPAST-FVY--AG 204 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSS-----TTTTCTTCCEEECTTSCCSEECTTT-TTT--CC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHH-----HhhCcccCCeeecCCCcceEechhh-Eee--cc
Confidence 4555555544 55455555555 3455555553 44444432 3555556666666555555444333 221 25
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCC
Q 005760 102 LEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGG 181 (678)
Q Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 181 (678)
|+++.|.. .++.+...+|.++++|+.+++.+| ++.+...+|.+ .+|+.+.|. +.++.....+|.++++|+.+.+.+
T Consensus 205 L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 55555553 255455555555555555555543 33344455554 455555552 334323445555555555555555
Q ss_pred CcCC-----CCChhhhhccccccceeccccccccccc-cccccccccEEEecCCcccCCCCccccccccccccccCcccc
Q 005760 182 NKLS-----GSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISL 255 (678)
Q Consensus 182 N~i~-----~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L 255 (678)
|.+. .+.+.+|.+|++|+.++|. +.++.++. +|.++.+|+.+.|..| ++.+....|.+ + +|
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~----------~-~L 347 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN----------T-GI 347 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS----------S-CC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC----------C-CC
Confidence 5443 2334455555555555555 23555543 4555555555555333 33222333322 2 45
Q ss_pred cEEEccCCcCCCcchHHHhccc-CCCceeccccc
Q 005760 256 ISLNLSNNNLSGAIPASLEKLS-YLKDLNLSFNK 288 (678)
Q Consensus 256 ~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~ 288 (678)
+.|++.+|.+....+..|..++ .+..|++..+.
T Consensus 348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 5555555555444444444442 34444444443
No 380
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2e-17 Score=170.80 Aligned_cols=220 Identities=16% Similarity=0.174 Sum_probs=155.3
Q ss_pred CCCCCEEecCCCccc--------------------ccCCccccC--------CCCCCEEEccCccCCCCccchhhccccc
Q 005760 20 ASKLSILELSDNSFS--------------------GFIPNTFGN--------LRNLQALRLSNNYLTSSTLELSFLSSLS 71 (678)
Q Consensus 20 l~~L~~L~l~~n~i~--------------------~~~~~~~~~--------l~~L~~L~l~~n~i~~~~~~~~~~~~~~ 71 (678)
+++|+.|||++|+|. .+...+|.+ +++|+.|+|.+ .++.++.. +|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~-----aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA-----AFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT-----TTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHH-----Hhh
Confidence 788999999999998 344556666 77777777777 66666644 477
Q ss_pred CCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccc----cccCCccccCCCCCc-EEEc---------------
Q 005760 72 NCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNV----SGGIPEEIGNLTNLT-IIYL--------------- 131 (678)
Q Consensus 72 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l----~~~~~~~~~~l~~L~-~L~l--------------- 131 (678)
+|++|+.|++++|.+..+.+.. |.+.. ++.++.+..+.. .......|.++.+|+ .+.+
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~a-F~~~~-~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEA-LADSV-TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTS-SCTTT-CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred cCcccceEEcCCCCccccchhh-hcCCC-ceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 7777777777777776555544 33332 455554444221 122233344444444 2222
Q ss_pred ----------cCCccCCcCChhh-hccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhcccccc-
Q 005760 132 ----------GGNKLNGSIPSTL-GKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLR- 199 (678)
Q Consensus 132 ----------~~N~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~- 199 (678)
.++-.. .....+ ..+++|++|+|++|+++...+.+|.++++|+.|++++| +..+.+.+|.++++|+
T Consensus 200 ~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp CGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred CccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 221100 001111 13789999999999999677788999999999999998 8878888999999999
Q ss_pred ceeccccccccccc-cccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEc
Q 005760 200 ILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNL 260 (678)
Q Consensus 200 ~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L 260 (678)
.|++.+ .++.++. +|.++++|+.|++++|.++.+.+..|.+++ +|+.|+.
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~----------~L~~ly~ 328 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV----------PSKLIYK 328 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC----------CCCEEEC
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc----------chhhhcc
Confidence 999999 8888875 799999999999999999988888888877 9998874
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=7.3e-17 Score=149.15 Aligned_cols=107 Identities=25% Similarity=0.257 Sum_probs=60.6
Q ss_pred CCCcEEEccCCccC-CcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhcccccccee
Q 005760 124 TNLTIIYLGGNKLN-GSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILL 202 (678)
Q Consensus 124 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~ 202 (678)
++|+.|++++|+++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666655 34455555666666666666666533 4555566666666666666654555555566666666
Q ss_pred cccccccccc--ccccccccccEEEecCCccc
Q 005760 203 LGSNELTSIP--LTFWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 203 l~~N~l~~l~--~~~~~l~~L~~L~l~~N~l~ 232 (678)
|++|.|+.++ ..+..+++|+.|++++|+++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 6666665554 34444444444444444444
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=4.5e-17 Score=150.57 Aligned_cols=130 Identities=27% Similarity=0.286 Sum_probs=70.7
Q ss_pred cccEEEccccccc-ccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEec
Q 005760 101 SLEYFEMAYCNVS-GGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLEL 179 (678)
Q Consensus 101 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 179 (678)
+|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..|..+++|++|+|++|++++.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444444 33444455555555555655555533 44555555666666666655444544445556666666
Q ss_pred CCCcCCCCCh-hhhhccccccceeccccccccccc----cccccccccEEEecCCccc
Q 005760 180 GGNKLSGSIP-ECFNNLASLRILLLGSNELTSIPL----TFWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 180 ~~N~i~~~~~-~~~~~l~~L~~L~l~~N~l~~l~~----~~~~l~~L~~L~l~~N~l~ 232 (678)
++|.+++... ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6665553321 455555666666666666665554 4555555666666655554
No 383
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.2e-16 Score=144.43 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=71.4
Q ss_pred CCCCcEEEccCCccC-CcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccce
Q 005760 123 LTNLTIIYLGGNKLN-GSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRIL 201 (678)
Q Consensus 123 l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L 201 (678)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356666777777665 45566666667777777777777633 556667777777777777776566666667777777
Q ss_pred ecccccccccc--ccccccccccEEEecCCcccCCC
Q 005760 202 LLGSNELTSIP--LTFWNLKDILYLNFSSNFFTGPL 235 (678)
Q Consensus 202 ~l~~N~l~~l~--~~~~~l~~L~~L~l~~N~l~~~~ 235 (678)
++++|+++.++ ..+..+++|+.|++++|++++..
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 77777776654 45555555555555555555433
No 384
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=8.8e-17 Score=152.02 Aligned_cols=133 Identities=21% Similarity=0.261 Sum_probs=119.7
Q ss_pred cEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCcccCCCCccccccccccccccCccc
Q 005760 175 YKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLIS 254 (678)
Q Consensus 175 ~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~ 254 (678)
+++++++|.++ .+|..+. ++|+.|+|++|.|+.+|..|..+++|+.|+|++|.|++..+..|.+++ +
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~----------~ 79 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT----------Q 79 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT----------T
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC----------C
Confidence 68999999999 5555443 689999999999999999999999999999999999988888888877 9
Q ss_pred ccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCC-CCccccccccccccCccccCCCCCC
Q 005760 255 LISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPR-GGSFGNFSAESFEGNELLCGSPNLR 320 (678)
Q Consensus 255 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~l~~~~~~~n~~~c~~~~~~ 320 (678)
|+.|+|++|+|++..+..|..+++|+.|+|++|.++...+. ...+..+..+++.+|||.|+|...|
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence 99999999999999999999999999999999999977765 4668899999999999999997543
No 385
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=1.2e-15 Score=160.93 Aligned_cols=242 Identities=11% Similarity=0.091 Sum_probs=175.1
Q ss_pred CCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccc
Q 005760 20 ASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLS 99 (678)
Q Consensus 20 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 99 (678)
...++.+.+.. .++.+...+|.+. +|+.+.|..| ++.++.. +|.++ +|+.+.+.+ .+..+.... |.++.
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~-----aF~~~-~L~~i~lp~-~l~~I~~~a-F~~c~ 180 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDM-----AFFNS-TVQEIVFPS-TLEQLKEDI-FYYCY 180 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTT-----TTTTC-CCCEEECCT-TCCEECSST-TTTCT
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHH-----hcCCC-CceEEEeCC-CccEehHHH-hhCcc
Confidence 46777777765 4666777888874 7888888776 6666654 57774 688888875 666555544 66665
Q ss_pred ccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEec
Q 005760 100 HSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLEL 179 (678)
Q Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 179 (678)
+|+++++++|+++.+....|. ..+|+.+.|..+ ++.+...+|.++++|+.+.|..| ++.....+|.+ .+|+.+.+
T Consensus 181 -~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 181 -NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp -TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred -cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 788888888888877777776 578888888744 66677778888888888888775 45355566666 77888888
Q ss_pred CCCcCCCCChhhhhccccccceeccccccc-----cccc-cccccccccEEEecCCcccCCCCccccccccccccccCcc
Q 005760 180 GGNKLSGSIPECFNNLASLRILLLGSNELT-----SIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLI 253 (678)
Q Consensus 180 ~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~-----~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~ 253 (678)
.|.++.+...+|.+|++|+.+++.+|.+. .++. +|.++++|+.++|.+ .++.+....|.++.
T Consensus 256 -p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~---------- 323 (401)
T 4fdw_A 256 -PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNR---------- 323 (401)
T ss_dssp -ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCC----------
T ss_pred -CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCC----------
Confidence 44566566778888888888888887765 5654 688888888888884 46656666666666
Q ss_pred cccEEEccCCcCCCcchHHHhcccCCCceecccccccc
Q 005760 254 SLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEG 291 (678)
Q Consensus 254 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 291 (678)
+|+.|+|.+| ++.+...+|..+ +|+.|++.+|....
T Consensus 324 ~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 8888888554 666777788888 88888888886553
No 386
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=2.9e-16 Score=146.44 Aligned_cols=132 Identities=24% Similarity=0.282 Sum_probs=69.1
Q ss_pred cEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceecccc
Q 005760 127 TIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSN 206 (678)
Q Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N 206 (678)
+.+++++|+++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------- 78 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL-------- 78 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc--------
Confidence 45556666555 2332222 455555555555554444444555555555555555554444444444444
Q ss_pred ccccccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceeccc
Q 005760 207 ELTSIPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSF 286 (678)
Q Consensus 207 ~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 286 (678)
+.|+|++|.+++..+..|.+++ +|+.|+|++|++++..+..+..+++|+.|++++
T Consensus 79 ---------------~~L~l~~N~l~~~~~~~~~~l~----------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 79 ---------------TILYLHENKLQSLPNGVFDKLT----------QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp ---------------CEEECCSSCCCCCCTTTTTTCT----------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------CEEECCCCCccccCHHHhhCCc----------ccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 4455555544444444444443 566666666666555444555566666666666
Q ss_pred ccccccCC
Q 005760 287 NKLEGEIP 294 (678)
Q Consensus 287 N~~~~~~~ 294 (678)
|+|.|.++
T Consensus 134 N~~~~~~~ 141 (177)
T 2o6r_A 134 NPWDCSCP 141 (177)
T ss_dssp SCBCCCHH
T ss_pred CCeeccCc
Confidence 66666555
No 387
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.1e-16 Score=144.72 Aligned_cols=126 Identities=23% Similarity=0.278 Sum_probs=100.0
Q ss_pred cccEEEccccccc-ccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEec
Q 005760 101 SLEYFEMAYCNVS-GGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLEL 179 (678)
Q Consensus 101 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 179 (678)
+|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 6777777777776 56677778888888888888888755 67888888888888888888657777777888888888
Q ss_pred CCCcCCCC-Chhhhhccccccceeccccccccccc----cccccccccEEEecC
Q 005760 180 GGNKLSGS-IPECFNNLASLRILLLGSNELTSIPL----TFWNLKDILYLNFSS 228 (678)
Q Consensus 180 ~~N~i~~~-~~~~~~~l~~L~~L~l~~N~l~~l~~----~~~~l~~L~~L~l~~ 228 (678)
++|.+++. .+..+..+++|++|++++|.++.++. .+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888853 34778888888888888888888765 577788888887763
No 388
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.64 E-value=9.8e-17 Score=165.15 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=97.5
Q ss_pred CCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCc--------------hhhhH--------HHHHHHHHhCCCccc
Q 005760 393 GFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGR--------------VFKSF--------DVECEMMKSIRHRNI 450 (678)
Q Consensus 393 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~--------------~~~~~--------~~e~~~l~~l~h~ni 450 (678)
=|++.+.||+|++|.||+|...+|+.||||+++..... ..... ..|...+.++.+.++
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 38899999999999999999889999999998542110 00111 234445555433332
Q ss_pred eeeeeeeecCCeEEEEEEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCC-
Q 005760 451 IKVISSCSNEEFKALVLEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNM- 529 (678)
Q Consensus 451 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~- 529 (678)
....-+.. ...++||||++|++|.++... + ....++.|++.++.||| +.|||||||||.|||++++|
T Consensus 176 ~vp~p~~~--~~~~LVME~i~G~~L~~l~~~-----~--~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~dgd 243 (397)
T 4gyi_A 176 PVPEPIAQ--SRHTIVMSLVDALPMRQVSSV-----P--DPASLYADLIALILRLA---KHGLIHGDFNEFNILIREEKD 243 (397)
T ss_dssp SCCCEEEE--ETTEEEEECCSCEEGGGCCCC-----S--CHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEEEEC
T ss_pred CCCeeeec--cCceEEEEecCCccHhhhccc-----H--HHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeCCCC
Confidence 11111111 123699999999888655421 1 23468899999999999 89999999999999998776
Q ss_pred ---------cEEEEeecccccc
Q 005760 530 ---------VAHLSDFGIAKLL 542 (678)
Q Consensus 530 ---------~~kl~Dfg~~~~~ 542 (678)
.+.|+||+-+...
T Consensus 244 ~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 244 AEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp SSCTTSEEEEEEECCCTTCEET
T ss_pred cccccccccceEEEEeCCcccC
Confidence 3899999988654
No 389
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.63 E-value=9.7e-18 Score=159.61 Aligned_cols=152 Identities=25% Similarity=0.281 Sum_probs=82.3
Q ss_pred CCCCcEEEccCCccCCcCCh------hhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccc
Q 005760 123 LTNLTIIYLGGNKLNGSIPS------TLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLA 196 (678)
Q Consensus 123 l~~L~~L~l~~N~l~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~ 196 (678)
...++.++++.|.+.+..|. .|..+++|++|+|++|.+++ +| .+..+++|++|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34444444444444444443 55555555555555555553 34 5555555555555555555 3444455555
Q ss_pred cccceeccccccccccccccccccccEEEecCCcccCCCC-ccccccccccccccCcccccEEEccCCcCCCcchH----
Q 005760 197 SLRILLLGSNELTSIPLTFWNLKDILYLNFSSNFFTGPLP-LEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPA---- 271 (678)
Q Consensus 197 ~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~---- 271 (678)
+|+.|+|++|+++.+| .+..+++|+.|++++|++++..+ ..+..++ +|+.|++++|++++..|.
T Consensus 94 ~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~----------~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 94 TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALD----------KLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTT----------TCSEEEECSCHHHHHHHTTTTH
T ss_pred cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCC----------CCCEEEecCCccccccccccch
Confidence 5666666666655555 45555566666666665553222 2333333 666666666666544332
Q ss_pred ------HHhcccCCCceeccccccc
Q 005760 272 ------SLEKLSYLKDLNLSFNKLE 290 (678)
Q Consensus 272 ------~~~~l~~L~~L~l~~N~~~ 290 (678)
.+..+++|+.|| +|+++
T Consensus 163 ~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHHHhCCCcEEEC--CcccC
Confidence 366777888775 66665
No 390
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=3.2e-15 Score=139.34 Aligned_cols=108 Identities=27% Similarity=0.308 Sum_probs=50.8
Q ss_pred CCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceecc
Q 005760 125 NLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLG 204 (678)
Q Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~ 204 (678)
+|++|++++|++++..+..|..+++|++|+|++|.|++..+..|..+++|++|++++|.+++..+..|..+++|+.|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333344444444444444444443333334444444444444444444444444444555555555
Q ss_pred cccccccccc-ccccccccEEEecCCccc
Q 005760 205 SNELTSIPLT-FWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 205 ~N~l~~l~~~-~~~l~~L~~L~l~~N~l~ 232 (678)
+|+|+.+|.. +..+++|+.|+|++|++.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555544442 344555555555555544
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=9.7e-16 Score=142.72 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=82.1
Q ss_pred ccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCC
Q 005760 70 LSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQK 149 (678)
Q Consensus 70 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (678)
+.++.+|+.|++++|+++.+ +. +..+.++|++|++++|.+++. ..|..+++|++|+|++|++++..+..|..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCchh-HH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 44455555555555555433 11 222222455555555555543 34667777777777777777555555577777
Q ss_pred CCEEEccCCcCCCCCCC--cccCCCCccEEecCCCcCCCCChh----hhhccccccceeccccccccc
Q 005760 150 LQGLGLENNKLEGSIPD--SICHSDELYKLELGGNKLSGSIPE----CFNNLASLRILLLGSNELTSI 211 (678)
Q Consensus 150 L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~N~i~~~~~~----~~~~l~~L~~L~l~~N~l~~l 211 (678)
|++|+|++|+|+ .+|. .+..+++|+.|++++|.++. .|. .+..+++|+.|++++|.+.+.
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 777777777776 4444 66677777777777777763 333 366677777777777766643
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.1e-15 Score=142.42 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=74.3
Q ss_pred cccCCCCCcEEEccCCccCCcCChhhhccC-CCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhcccc
Q 005760 119 EIGNLTNLTIIYLGGNKLNGSIPSTLGKLQ-KLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLAS 197 (678)
Q Consensus 119 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~ 197 (678)
.+.++.+|++|++++|+++. ++. +..+. +|++|+|++|.|++. ..+..+++|++|++++|.|++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35567777777777777773 343 44443 777777777777743 46777777777777777777555555577777
Q ss_pred ccceeccccccccccc--cccccccccEEEecCCccc
Q 005760 198 LRILLLGSNELTSIPL--TFWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 198 L~~L~l~~N~l~~l~~--~~~~l~~L~~L~l~~N~l~ 232 (678)
|+.|+|++|+|+.+|. .+..+++|+.|++++|++.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 7777777777777665 5666666666666666665
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=3.9e-17 Score=155.41 Aligned_cols=144 Identities=18% Similarity=0.199 Sum_probs=111.5
Q ss_pred CccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccc
Q 005760 117 PEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLA 196 (678)
Q Consensus 117 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~ 196 (678)
|..|..+++|++|+|++|++++ +| .+..+++|++|+|++|.|+ .+|..+..+++|++|++++|.+++ +| .+..++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence 3478889999999999999985 56 8889999999999999998 677778888999999999999995 44 688899
Q ss_pred cccceeccccccccccc--cccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCC
Q 005760 197 SLRILLLGSNELTSIPL--TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSG 267 (678)
Q Consensus 197 ~L~~L~l~~N~l~~l~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~ 267 (678)
+|+.|+|++|+++.++. .+..+++|+.|++++|++.+..|..-..-......+..+++|+.|| +|.++.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999999999998865 6889999999999999987665432000000000112344899887 777764
No 394
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=3e-14 Score=131.57 Aligned_cols=110 Identities=24% Similarity=0.270 Sum_probs=61.8
Q ss_pred CCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCC
Q 005760 150 LQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSN 229 (678)
Q Consensus 150 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N 229 (678)
.++|++++|.++ .+|..+. ++|++|+|++|.|++..|..|..+++|++|+|++|+|+.+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l------------------ 69 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL------------------ 69 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------------------
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc------------------
Confidence 345666666665 3444332 4555555555555555455555555555555555544444
Q ss_pred cccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCC
Q 005760 230 FFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPR 295 (678)
Q Consensus 230 ~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 295 (678)
.+..|.+++ +|+.|+|++|+|++..+..|..+++|+.|+|++|+|.|.++.
T Consensus 70 -----~~~~f~~l~----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 70 -----PAGVFDKLT----------QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp -----CTTTTTTCT----------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred -----ChhhccCCC----------CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 444444444 666666666666655555666666677777777777766653
No 395
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2e-13 Score=126.39 Aligned_cols=84 Identities=26% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceecc
Q 005760 125 NLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLG 204 (678)
Q Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~ 204 (678)
+|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 33444444444433333333334444444444444432222223333334444444443333333333333333333333
Q ss_pred cccc
Q 005760 205 SNEL 208 (678)
Q Consensus 205 ~N~l 208 (678)
+|.+
T Consensus 114 ~N~~ 117 (174)
T 2r9u_A 114 NNPW 117 (174)
T ss_dssp SSCB
T ss_pred CCCc
Confidence 3333
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.2e-13 Score=125.76 Aligned_cols=84 Identities=29% Similarity=0.380 Sum_probs=32.7
Q ss_pred CCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceec
Q 005760 124 TNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLL 203 (678)
Q Consensus 124 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l 203 (678)
++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 33344444444444333333444444444444444444333333333344444444444443333333333333333333
Q ss_pred cccc
Q 005760 204 GSNE 207 (678)
Q Consensus 204 ~~N~ 207 (678)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 3333
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=2.5e-13 Score=125.82 Aligned_cols=103 Identities=30% Similarity=0.372 Sum_probs=54.1
Q ss_pred cEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceecccc
Q 005760 127 TIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSN 206 (678)
Q Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N 206 (678)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45566666664 3444332 55566666666665544555555555555555555555444444555555555555555
Q ss_pred cccccccc-ccccccccEEEecCCccc
Q 005760 207 ELTSIPLT-FWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 207 ~l~~l~~~-~~~l~~L~~L~l~~N~l~ 232 (678)
+|+.+|.. |..+++|+.|+|++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 55555442 444444444444444443
No 398
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=8e-15 Score=153.14 Aligned_cols=146 Identities=21% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCCcEEEccCCccCCcCChhh-hccCCCCEEEccCCcCCCCCCCcc-----cCCCCccEEecCCCcCCCC----Chhhhh
Q 005760 124 TNLTIIYLGGNKLNGSIPSTL-GKLQKLQGLGLENNKLEGSIPDSI-----CHSDELYKLELGGNKLSGS----IPECFN 193 (678)
Q Consensus 124 ~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~l~~N~i~~~----~~~~~~ 193 (678)
++|++|+|++|.++......+ ..+++|++|+|++|.|+......+ ...++|++|+|++|.|++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555542222222 123445555555555542221222 1234555555555555421 222334
Q ss_pred ccccccceecccccccc-----ccccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCc
Q 005760 194 NLASLRILLLGSNELTS-----IPLTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGA 268 (678)
Q Consensus 194 ~l~~L~~L~l~~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~ 268 (678)
.+++|++|+|++|.|+. ++..+...++|+.|+|++|.|+......+... ....++|++|+|++|.|+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~------L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA------AREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH------HHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH------HHhCCCCCEEeccCCCCCHH
Confidence 45556666666665553 23344555566666666666553322222110 00122566666666666655
Q ss_pred chHHHhc
Q 005760 269 IPASLEK 275 (678)
Q Consensus 269 ~~~~~~~ 275 (678)
....+..
T Consensus 255 g~~~L~~ 261 (372)
T 3un9_A 255 GRQVLRD 261 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 399
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=2e-14 Score=150.10 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=122.1
Q ss_pred CCCCcEEEccCCccCCcCChhhhcc-----CCCCEEEccCCcCCCCCCCcc-cCCCCccEEecCCCcCCCCChhhhh---
Q 005760 123 LTNLTIIYLGGNKLNGSIPSTLGKL-----QKLQGLGLENNKLEGSIPDSI-CHSDELYKLELGGNKLSGSIPECFN--- 193 (678)
Q Consensus 123 l~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~N~i~~~~~~~~~--- 193 (678)
+++|+.|+|++|.++......+... ++|++|+|++|.|+......+ ..+++|+.|+|++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5789999999999985554555443 799999999999974333333 3467899999999999865555553
Q ss_pred --ccccccceecccccccc-----ccccccccccccEEEecCCcccCCCC----ccccccccccccccCcccccEEEccC
Q 005760 194 --NLASLRILLLGSNELTS-----IPLTFWNLKDILYLNFSSNFFTGPLP----LEIGNLKIARIDSCDLISLISLNLSN 262 (678)
Q Consensus 194 --~l~~L~~L~l~~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~~~~~~~~~~~L~~L~L~~ 262 (678)
..++|+.|+|++|.|+. ++..+..+++|++|+|++|.|+.... ..+... ++|+.|+|++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~----------~~L~~L~Ls~ 220 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN----------RQLQELNVAY 220 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC----------SCCCEEECCS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC----------CCcCeEECCC
Confidence 46789999999999985 45567889999999999999875442 233333 3899999999
Q ss_pred CcCCCcch----HHHhcccCCCceecccccccc
Q 005760 263 NNLSGAIP----ASLEKLSYLKDLNLSFNKLEG 291 (678)
Q Consensus 263 N~l~~~~~----~~~~~l~~L~~L~l~~N~~~~ 291 (678)
|.|+.... .++...+.|++|+|++|+++.
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 99986443 444567999999999999874
No 400
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=3.1e-13 Score=140.50 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=39.1
Q ss_pred EEccCC-cCCCCCCCcccCCCCccEEecCC-CcCCCCChhhhhccccccceeccccccccccc-cccccccccEEEecCC
Q 005760 153 LGLENN-KLEGSIPDSICHSDELYKLELGG-NKLSGSIPECFNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSN 229 (678)
Q Consensus 153 L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~-N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N 229 (678)
++++++ +|+ .+|. +..+++|+.|+|++ |.|++..+..|.++++|+.|+|++|+|+.++. .|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 445554 555 3444 55555555555553 55554444445555555555555555554433 3444444444444444
Q ss_pred cccCC
Q 005760 230 FFTGP 234 (678)
Q Consensus 230 ~l~~~ 234 (678)
+|++.
T Consensus 91 ~l~~~ 95 (347)
T 2ifg_A 91 ALESL 95 (347)
T ss_dssp CCSCC
T ss_pred cccee
Confidence 44433
No 401
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.34 E-value=6.3e-12 Score=132.91 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=86.0
Q ss_pred cCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCC
Q 005760 12 TIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILP 91 (678)
Q Consensus 12 ~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 91 (678)
.-..+|.++.+|+.+.|.. .++.+...+|.++++|+.++|.++ ++.++.. +|.++.+|+.+.+..+ +..+..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~-----aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRC-----TFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTT-----TTTTCTTCCCCCCCTT-CCEECT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccch-----hhcccccchhhcccCc-eeeecc
Confidence 3345677789999999974 488788899999999999999765 6655543 5888888888777654 333333
Q ss_pred hhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCC
Q 005760 92 KTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHS 171 (678)
Q Consensus 92 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 171 (678)
.. |.+.. ++.+.+. ..+......+|.++++|+.+.+.++... +...+|.++++|+.+.+..| ++.....+|.++
T Consensus 134 ~a-F~~~~--~~~~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 134 EA-FKGCD--FKEITIP-EGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp TT-TTTCC--CSEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred ee-eeccc--ccccccC-ccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 22 22221 1111111 1122223344555555555555444322 44445555555555555444 221233344444
Q ss_pred CCccEEecC
Q 005760 172 DELYKLELG 180 (678)
Q Consensus 172 ~~L~~L~l~ 180 (678)
..|+.+.+.
T Consensus 208 ~~L~~i~~~ 216 (394)
T 4fs7_A 208 ILLENMEFP 216 (394)
T ss_dssp TTCCBCCCC
T ss_pred cccceeecC
Confidence 444444443
No 402
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=8.5e-12 Score=131.91 Aligned_cols=256 Identities=15% Similarity=0.107 Sum_probs=136.2
Q ss_pred cCcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccch-----------------hhcccc
Q 005760 8 NFSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLEL-----------------SFLSSL 70 (678)
Q Consensus 8 ~~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-----------------~~~~~~ 70 (678)
+++..-..+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..++... --..+|
T Consensus 81 ~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF 158 (394)
T 4fs7_A 81 TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAF 158 (394)
T ss_dssp TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTT
T ss_pred CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccccchhhh
Confidence 455344567788999999999865 77677899999999998887654 22222110 001257
Q ss_pred cCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCC
Q 005760 71 SNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKL 150 (678)
Q Consensus 71 ~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (678)
.++++|+.+.+.++. ..+.. ..|.+.. +|+.+++..+ ++.+....|.++..|+.+.+..+... + ...+....+|
T Consensus 159 ~~c~~L~~i~l~~~~-~~I~~-~~F~~c~-~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l 232 (394)
T 4fs7_A 159 ATCESLEYVSLPDSM-ETLHN-GLFSGCG-KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGV 232 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECT-TTTTTCT-TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCC
T ss_pred cccCCCcEEecCCcc-ceecc-ccccCCC-CceEEEcCCC-ceEeCchhhccccccceeecCCCceE-e-ehhhcccCCC
Confidence 777888888887553 22333 2355554 6777777665 55555666777777777766655432 1 1222233455
Q ss_pred CEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccccccccccccEEEecCCc
Q 005760 151 QGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPLTFWNLKDILYLNFSSNF 230 (678)
Q Consensus 151 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~~~~~l~~L~~L~l~~N~ 230 (678)
+.+.+..+.-. .....|..+.+|+.+.+..+... .....|..+..|+.+....+.+.. ..|....+|+.+.+..+
T Consensus 233 ~~i~ip~~~~~-i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 233 KNIIIPDSFTE-LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CEEEECTTCCE-ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-
T ss_pred ceEEECCCcee-cccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc--ccccccccccccccccc-
Confidence 55555433222 33345555666666666555433 334445555555544444332111 13444444555544433
Q ss_pred ccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecccc
Q 005760 231 FTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFN 287 (678)
Q Consensus 231 l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 287 (678)
++.+....|.++. +|+.++|.++ ++.+...+|.++.+|+.+++..|
T Consensus 308 i~~I~~~aF~~c~----------~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 308 VKFIGEEAFESCT----------SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CCEECTTTTTTCT----------TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cceechhhhcCCC----------CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 3323333333333 4444444322 33344444444444554444433
No 403
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=2.7e-11 Score=128.09 Aligned_cols=251 Identities=13% Similarity=0.163 Sum_probs=144.7
Q ss_pred CccccCCC-CCCEEecCCCcccccCCccccCCCCCCEEEccCcc---CCCCccchhhcccccCCCCCcEEECccCCCccc
Q 005760 14 PRFIFNAS-KLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNY---LTSSTLELSFLSSLSNCKSLTLISFSNNPLDGI 89 (678)
Q Consensus 14 p~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 89 (678)
..+|.+.+ .|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++.++.. +|.++.+|+.+.+..+ ++.+
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~-----aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQ-----AFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTT-----TTTTCTTCCBCGGGTT-CSEE
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechh-----hchhcccceeeccCCc-ccee
Confidence 35555553 5888888754 776777888888888888887764 4444433 4666666666665543 3333
Q ss_pred CChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCCc----------------------CChhhhcc
Q 005760 90 LPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGS----------------------IPSTLGKL 147 (678)
Q Consensus 90 ~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~----------------------~~~~~~~l 147 (678)
.... +.... +|+.+.+.. .+..+....|.++.+|+.+.+.++ ++.+ ...+|.++
T Consensus 129 ~~~a-F~~c~-~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c 204 (394)
T 4gt6_A 129 DSEA-FHHCE-ELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSEC 204 (394)
T ss_dssp CTTT-TTTCT-TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTC
T ss_pred hhhh-hhhhc-ccccccccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhc
Confidence 3322 33333 566666643 233344445555555555555443 2212 33344444
Q ss_pred CCCCEEEccCCcC------------------------------------CCCCCCcccCCCCccEEecCCCcCCCCChhh
Q 005760 148 QKLQGLGLENNKL------------------------------------EGSIPDSICHSDELYKLELGGNKLSGSIPEC 191 (678)
Q Consensus 148 ~~L~~L~L~~n~i------------------------------------~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~ 191 (678)
.+++......+.. +.....+|.++.+|+.+.+..+... ....+
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~a 283 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGA 283 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcc
Confidence 4444433322211 1011235556666677766655443 45566
Q ss_pred hhccccccceeccccccccccc-cccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcch
Q 005760 192 FNNLASLRILLLGSNELTSIPL-TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIP 270 (678)
Q Consensus 192 ~~~l~~L~~L~l~~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 270 (678)
|.++++|+.+.+. +.++.++. +|.++.+|+.+.|..+ ++.+....|.++. +|+.+.|.++ ++.+..
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~----------~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE----------QLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT----------TCCEEEECTT-CCBCCG
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC----------CCCEEEECcc-cCEEhH
Confidence 6777777777775 45666655 5777777777777654 4444555555555 7777777544 666667
Q ss_pred HHHhcccCCCceecccccc
Q 005760 271 ASLEKLSYLKDLNLSFNKL 289 (678)
Q Consensus 271 ~~~~~l~~L~~L~l~~N~~ 289 (678)
.+|.++++|+.+++.+|..
T Consensus 351 ~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp GGGTTCTTCCEEEESSCHH
T ss_pred hHhhCCCCCCEEEECCcee
Confidence 7777777888877777654
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=6.4e-12 Score=130.51 Aligned_cols=102 Identities=24% Similarity=0.203 Sum_probs=65.6
Q ss_pred EEEccCC-ccCCcCChhhhccCCCCEEEccC-CcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccc
Q 005760 128 IIYLGGN-KLNGSIPSTLGKLQKLQGLGLEN-NKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGS 205 (678)
Q Consensus 128 ~L~l~~N-~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~ 205 (678)
.++++++ +++ .+|. +..+++|++|+|++ |.|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 3555 66667777777764 777655556677777777777777777766666677777777777777
Q ss_pred ccccccccc-ccccccccEEEecCCccc
Q 005760 206 NELTSIPLT-FWNLKDILYLNFSSNFFT 232 (678)
Q Consensus 206 N~l~~l~~~-~~~l~~L~~L~l~~N~l~ 232 (678)
|+|+.+|.. |..++ |+.|+|.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777766653 33332 555665555554
No 405
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.28 E-value=1.2e-11 Score=122.98 Aligned_cols=146 Identities=16% Similarity=0.113 Sum_probs=114.8
Q ss_pred HHhhcCCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCC-CccceeeeeeeecCCeEEEE
Q 005760 388 CRATDGFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-HRNIIKVISSCSNEEFKALV 466 (678)
Q Consensus 388 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv 466 (678)
...-.+|+.....+.|+.+.||++... +..+++|+...........+.+|+++++.+. +..+.++++++.+.+..|+|
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv 88 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL 88 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence 334467888888999999999999864 6889999987543334467899999999885 66788899999888899999
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcC--------------------------------------
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFG-------------------------------------- 508 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-------------------------------------- 508 (678)
|||++|.++.+.+.. ......++.+++.++..||.-
T Consensus 89 ~e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (263)
T 3tm0_A 89 MSEADGVLCSEEYED------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT 162 (263)
T ss_dssp EECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTC
T ss_pred EEecCCeehhhccCC------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccc
Confidence 999999999876421 112346788999999999951
Q ss_pred ------------------CCCCeEEcCCCCCCeeecCCCcEEEEeecccc
Q 005760 509 ------------------YSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAK 540 (678)
Q Consensus 509 ------------------~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~ 540 (678)
....++|+|+++.||++++++.+.|+||+.+.
T Consensus 163 ~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 163 PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp SSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred cCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 01458999999999999876666799998764
No 406
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.21 E-value=2.2e-10 Score=120.95 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=102.0
Q ss_pred cccccCCccccCCC-CCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCC---CcccCChhhhhcccccccEEEc
Q 005760 32 SFSGFIPNTFGNLR-NLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNP---LDGILPKTSVGNLSHSLEYFEM 107 (678)
Q Consensus 32 ~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~~l~~~L~~L~l 107 (678)
.++.+...+|.+.+ .|+.+.+-.+ ++.++.. +|.+|.+|+.+.+..|. ++.+...+ |.... +|+.+.+
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~-----AF~~C~~L~~i~~~~n~p~~l~~Ig~~a-F~~c~-~L~~i~~ 121 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSN-----AFYNCTSLKRVTIQDNKPSCVKKIGRQA-FMFCS-ELTDIPI 121 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTT-CCEECTT-----TTTTCTTCCEEEEGGGCCCCCCEECTTT-TTTCT-TCCBCGG
T ss_pred eeeEcCHhhccCCCCcCEEEEECCC-eeEEhHH-----HhhCCccCceEeecCCCCCeeeEechhh-chhcc-cceeecc
Confidence 46667788999885 5999999765 7777754 69999999999998875 65555544 55554 7888777
Q ss_pred ccccccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCC
Q 005760 108 AYCNVSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGN 182 (678)
Q Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N 182 (678)
..+ ++.+....|.++.+|+.+.+..+-- .+...+|.++.+|+.+.+..+ ++.....+|. ...|+.+.+..+
T Consensus 122 ~~~-~~~I~~~aF~~c~~L~~i~lp~~~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~ 192 (394)
T 4gt6_A 122 LDS-VTEIDSEAFHHCEELDTVTIPEGVT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAK 192 (394)
T ss_dssp GTT-CSEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTT
T ss_pred CCc-cceehhhhhhhhcccccccccceee-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCc
Confidence 654 6667778899999999999986544 477789999999999999766 3323334443 355666666543
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.10 E-value=1.9e-10 Score=114.08 Aligned_cols=136 Identities=16% Similarity=0.109 Sum_probs=101.0
Q ss_pred CCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCcc--ceeeeeeeecCCeEEEEEEec
Q 005760 393 GFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRN--IIKVISSCSNEEFKALVLEYM 470 (678)
Q Consensus 393 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~~~~~~~~~lv~e~~ 470 (678)
+|.+....+.|..+.||++...+|..+++|+.... ....+..|+.+++.+.+.+ +.+++++....+..++||||+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i 97 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV 97 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEec
Confidence 44443333456669999998777888999997543 3366888999999886544 456888888888889999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----------------------------------------
Q 005760 471 PHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGY----------------------------------------- 509 (678)
Q Consensus 471 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----------------------------------------- 509 (678)
+|.++. ... .+ ...++.+++..+..||...
T Consensus 98 ~G~~l~--~~~----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (264)
T 1nd4_A 98 PGQDLL--SSH----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPA 168 (264)
T ss_dssp SSEETT--TSC----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHH
T ss_pred CCcccC--cCc----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHH
Confidence 998883 211 12 2357788888888888321
Q ss_pred --------------CCCeEEcCCCCCCeeecCCCcEEEEeecccc
Q 005760 510 --------------SAQVIHCDLKPSNVLLDDNMVAHLSDFGIAK 540 (678)
Q Consensus 510 --------------~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~ 540 (678)
...++|+|++|.||++++++.+.++|||.+.
T Consensus 169 ~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 169 ELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp HHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred HHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1129999999999999887667799999874
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=3.8e-09 Score=110.89 Aligned_cols=57 Identities=11% Similarity=0.158 Sum_probs=31.2
Q ss_pred cCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECc
Q 005760 18 FNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFS 82 (678)
Q Consensus 18 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~ 82 (678)
....+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.++.. +|.++ +|+.+.+.
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~-----aF~~c-~l~~i~~~ 99 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDG-----AFADT-KLQSYTGM 99 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTT-----TTTTC-CCCEEEEC
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechh-----hhcCC-CCceEECC
Confidence 3445566666653 355555666666666666666543 4444433 35554 45555544
No 409
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=7e-11 Score=122.16 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=52.4
Q ss_pred ccccccceecccccccc-ccccc---cccccccEEEecCCcccCCCCcccc-ccccccccccCcccccEEEccCCcCCCc
Q 005760 194 NLASLRILLLGSNELTS-IPLTF---WNLKDILYLNFSSNFFTGPLPLEIG-NLKIARIDSCDLISLISLNLSNNNLSGA 268 (678)
Q Consensus 194 ~l~~L~~L~l~~N~l~~-l~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~~~~~~~~~~~L~~L~L~~N~l~~~ 268 (678)
.+++|+.|+|++|.++. .+..+ ..+++|+.|+|+.|.+++.....+. +++ .+++|+.|+|++|.|+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~-------~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD-------KIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH-------HHTTCSEEECCSBBCCHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc-------cCCcceEEECCCCcCCHH
Confidence 35677777777776653 11111 2467788888888877654332221 111 234888888888888766
Q ss_pred chHHHhc-ccCCCceeccccc
Q 005760 269 IPASLEK-LSYLKDLNLSFNK 288 (678)
Q Consensus 269 ~~~~~~~-l~~L~~L~l~~N~ 288 (678)
.-..+.. + ...+++++|+
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 5555554 3 3557888877
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=3e-10 Score=117.46 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=109.0
Q ss_pred ccCCCCCcEEEccCCccC---------CcCChhhhccCCCCEEEccCCc-CCCCCCCcccCCCCccEEecCCCcCCCCCh
Q 005760 120 IGNLTNLTIIYLGGNKLN---------GSIPSTLGKLQKLQGLGLENNK-LEGSIPDSICHSDELYKLELGGNKLSGSIP 189 (678)
Q Consensus 120 ~~~l~~L~~L~l~~N~l~---------~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~ 189 (678)
...+++|+.|.+.++... +.+...+..+|+|+.|+|++|. +. ++. + .+++|++|+|..|.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHH
Confidence 445677777777654321 1233455678899999998874 33 333 3 37899999999888874443
Q ss_pred hhhh--ccccccceeccc--cc------cccccccc--cccccccEEEecCCcccCCCCccccccccccccccCcccccE
Q 005760 190 ECFN--NLASLRILLLGS--NE------LTSIPLTF--WNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLIS 257 (678)
Q Consensus 190 ~~~~--~l~~L~~L~l~~--N~------l~~l~~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~ 257 (678)
..+. .+++|++|+|+. |. +..+...+ ..+++|+.|+|++|.+.+..+..+... ..+|+|+.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-------~~~~~L~~ 283 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-------DILPQLET 283 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-------SSGGGCSE
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-------ccCCCCCE
Confidence 4444 688999998863 21 22333333 357899999999999875443333221 13569999
Q ss_pred EEccCCcCCCcchHH----HhcccCCCceecccccccc
Q 005760 258 LNLSNNNLSGAIPAS----LEKLSYLKDLNLSFNKLEG 291 (678)
Q Consensus 258 L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~~ 291 (678)
|+|+.|.|++..+.. +..+++|+.|++++|.++.
T Consensus 284 LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 999999998754433 3567999999999998764
No 411
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.92 E-value=1.9e-09 Score=112.20 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=106.3
Q ss_pred CCCccccCCCceeEEEEEeCCCcEEEEEEee--ccc-CchhhhHHHHHHHHHhCC--CccceeeeeeeecC---CeEEEE
Q 005760 395 SENNLIGRGSFGSVFKARLGDGMEVAMKVFN--LQY-GRVFKSFDVECEMMKSIR--HRNIIKVISSCSNE---EFKALV 466 (678)
Q Consensus 395 ~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~---~~~~lv 466 (678)
...+.++.|.++.||+....+ ..+++|+.. ... ......+.+|+.+++.+. +..+.+++.++.+. +..++|
T Consensus 41 ~~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~v 119 (359)
T 3dxp_A 41 LSVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYI 119 (359)
T ss_dssp CEEEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred ceEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEE
Confidence 345789999999999998754 578888875 322 123457888999999987 45578888888766 458899
Q ss_pred EEecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCC-------------------------------------
Q 005760 467 LEYMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGY------------------------------------- 509 (678)
Q Consensus 467 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~------------------------------------- 509 (678)
|||++|..+.+... ..++...+..++.+++..|+.||...
T Consensus 120 me~v~G~~l~~~~~---~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (359)
T 3dxp_A 120 MEFVSGRVLWDQSL---PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPA 196 (359)
T ss_dssp EECCCCBCCCCTTC---TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHH
T ss_pred EEecCCeecCCCcc---ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChH
Confidence 99999987744221 23677788889999999999999520
Q ss_pred ------------------CCCeEEcCCCCCCeeecCCCc--EEEEeeccccc
Q 005760 510 ------------------SAQVIHCDLKPSNVLLDDNMV--AHLSDFGIAKL 541 (678)
Q Consensus 510 ------------------~~~ivH~dl~~~Nill~~~~~--~kl~Dfg~~~~ 541 (678)
...++|+|+++.||+++.++. +.++||+.+..
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 197 MDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 257999999999999997753 68999998864
No 412
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=3.7e-08 Score=103.27 Aligned_cols=249 Identities=11% Similarity=0.049 Sum_probs=145.5
Q ss_pred CcccCCccccCCCCCCEEecCCCcccccCCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcc
Q 005760 9 FSGTIPRFIFNASKLSILELSDNSFSGFIPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDG 88 (678)
Q Consensus 9 ~~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 88 (678)
++..-..+|.++.+|+.++|..+ ++.+...+|.+. +|+.+.+..+ +..++.. +|..+ +|+.+.+.++ +..
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~-----aF~~~-~L~~i~lp~~-~~~ 126 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDY-----VFQGT-DLDDFEFPGA-TTE 126 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTT-----TTTTC-CCSEEECCTT-CCE
T ss_pred ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccc-----eeccC-CcccccCCCc-ccc
Confidence 44334467778899999999754 777888999887 7888888654 5555543 47665 7999999876 333
Q ss_pred cCChhhhhcccccccEEEcccccccccCCccccCCCCCcEEEccCCccCC------------------------------
Q 005760 89 ILPKTSVGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNKLNG------------------------------ 138 (678)
Q Consensus 89 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~------------------------------ 138 (678)
+.... +.+. +|+.+.+.. .++.+....|..+.+++.+.+..+....
T Consensus 127 i~~~~-F~~~--~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (379)
T 4h09_A 127 IGNYI-FYNS--SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIP 202 (379)
T ss_dssp ECTTT-TTTC--CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECC
T ss_pred ccccc-cccc--eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccc
Confidence 43333 3332 566666654 3555666778888888888776543220
Q ss_pred -----cCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCCcCCCCChhhhhccccccceeccccccccccc
Q 005760 139 -----SIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGNKLSGSIPECFNNLASLRILLLGSNELTSIPL 213 (678)
Q Consensus 139 -----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l~~l~~ 213 (678)
....++....+|+.+.+..+--. ....+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++.++.
T Consensus 203 ~~~~~i~~~~f~~~~~l~~i~~~~~~~~-i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~ 279 (379)
T 4h09_A 203 STVKTVTAYGFSYGKNLKKITITSGVTT-LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPY 279 (379)
T ss_dssp TTCCEECTTTTTTCSSCSEEECCTTCCE-ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECT
T ss_pred cceeEEeecccccccccceeeeccceeE-EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccc
Confidence 11123333444555554433221 33445555555666655544 33344455555566666655433 444444
Q ss_pred -cccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcchHHHhcccCCCceecc
Q 005760 214 -TFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIPASLEKLSYLKDLNLS 285 (678)
Q Consensus 214 -~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 285 (678)
.|.++.+|+.+.+.++.++.+....|.++. +|+.+.|.++ ++.+...+|.++.+|+.+.+.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~----------~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCV----------KLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCT----------TCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccccceehhhhhcCCC----------CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 455566666666665555544445555444 5666666443 444555556666666655554
No 413
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.75 E-value=1.9e-09 Score=109.51 Aligned_cols=187 Identities=17% Similarity=0.156 Sum_probs=120.6
Q ss_pred CccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCC-Ccc--ceeeeeeeecCC---eEEEEEEec
Q 005760 397 NNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-HRN--IIKVISSCSNEE---FKALVLEYM 470 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~n--iv~~~~~~~~~~---~~~lv~e~~ 470 (678)
.+.++.|....||+.. ..+++|+.... .....+.+|.++++.+. +.. +.+++......+ ..|+|||++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4668999999999864 46889986432 33567888999998874 333 344555443333 347899999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcC------------------------------------------
Q 005760 471 PHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFG------------------------------------------ 508 (678)
Q Consensus 471 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~------------------------------------------ 508 (678)
+|.++.+.... .++..++..++.+++..++.||..
T Consensus 99 ~G~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 99 KGVPLTPLLLN---NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp CCEECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCeECCccccc---cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 99888654332 256677778888888888888841
Q ss_pred -------------CCCCeEEcCCCCCCeeecC--CCcEEEEeeccccccCCCCCcceeecccCCccccCccccC----C-
Q 005760 509 -------------YSAQVIHCDLKPSNVLLDD--NMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGK----E- 568 (678)
Q Consensus 509 -------------~~~~ivH~dl~~~Nill~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~----~- 568 (678)
....++|+|+++.||++++ +..+.++||+.+..-.+.. ... .......-..|+... .
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~--Dl~-~~~~~~~~~~~~~~~~~l~~Y 252 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDN--DFI-SLMEDDEEYGMEFVSKILNHY 252 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTH--HHH-TTCCTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHH--HHH-HHHhhccccCHHHHHHHHHHc
Confidence 0135899999999999998 5567899999986532210 000 000000001222110 0
Q ss_pred CC---------CCccchHHHHHHHHHHHHcCCCCCC
Q 005760 569 GR---------VSANGDVYSFGIMLMETFTRKKPTD 595 (678)
Q Consensus 569 ~~---------~~~~~DvwslGv~l~ell~g~~p~~ 595 (678)
+. .....+.|++|.++|++.+|..+|.
T Consensus 253 ~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~~ 288 (304)
T 3sg8_A 253 KHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWY 288 (304)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 00 1122589999999999999988763
No 414
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=3.2e-09 Score=98.99 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=63.1
Q ss_pred ccccCCCCCCEEEccCc-cCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhccc--ccccEEEccccccccc
Q 005760 39 NTFGNLRNLQALRLSNN-YLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLS--HSLEYFEMAYCNVSGG 115 (678)
Q Consensus 39 ~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~--~~L~~L~l~~n~l~~~ 115 (678)
..+...++|++|+|++| .+...... .+...+...++|++|+|++|.|...........+. .+|++|+|++|.|...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~-~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLK-ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHH-HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHH-HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 34444455555555555 44432211 12233444455555555555554322211111111 2455555555555532
Q ss_pred ----CCccccCCCCCcEEEc--cCCccCCcC----ChhhhccCCCCEEEccCCcCC
Q 005760 116 ----IPEEIGNLTNLTIIYL--GGNKLNGSI----PSTLGKLQKLQGLGLENNKLE 161 (678)
Q Consensus 116 ----~~~~~~~l~~L~~L~l--~~N~l~~~~----~~~~~~l~~L~~L~L~~n~i~ 161 (678)
+...+...++|++|+| ++|.|.... ...+...++|++|+|++|.|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445666777888888 778876432 234445578888888888875
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=4.2e-09 Score=98.24 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=63.0
Q ss_pred cccCCCCCcEEECccC-CCcccCChhhhhccc--ccccEEEccccccccc----CCccccCCCCCcEEEccCCccCCc--
Q 005760 69 SLSNCKSLTLISFSNN-PLDGILPKTSVGNLS--HSLEYFEMAYCNVSGG----IPEEIGNLTNLTIIYLGGNKLNGS-- 139 (678)
Q Consensus 69 ~~~~l~~L~~L~L~~n-~i~~~~~~~~~~~l~--~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~-- 139 (678)
.+...++|++|+|++| .|...........+. .+|++|+|++|.+... +...+...++|++|+|++|.|...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4555666666666666 665332222111111 2566666666666543 233344456666666666666532
Q ss_pred --CChhhhccCCCCEEEc--cCCcCCCC----CCCcccCCCCccEEecCCCcCC
Q 005760 140 --IPSTLGKLQKLQGLGL--ENNKLEGS----IPDSICHSDELYKLELGGNKLS 185 (678)
Q Consensus 140 --~~~~~~~l~~L~~L~L--~~n~i~~~----~~~~~~~l~~L~~L~l~~N~i~ 185 (678)
+..++...++|++|+| ++|.|+.. +...+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1334445566666666 56666532 2234444566666666666665
No 416
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.46 E-value=4.4e-07 Score=92.60 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=99.4
Q ss_pred CCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCC----ccceeeeeeeecCCeEEEEEE
Q 005760 393 GFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRH----RNIIKVISSCSNEEFKALVLE 468 (678)
Q Consensus 393 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h----~niv~~~~~~~~~~~~~lv~e 468 (678)
.+...+.++.|..+.||+. +..+++|+.... .....+..|.++++.+.+ -.+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 5666788999999999998 667889986432 223567889999988865 123444544 45679999
Q ss_pred ecCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCC--------------------------------------
Q 005760 469 YMPHGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYS-------------------------------------- 510 (678)
Q Consensus 469 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~-------------------------------------- 510 (678)
|++|.++.+.... .++..+...++.+++..++.||....
T Consensus 108 ~i~G~~l~~~~~~---~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
T 3r70_A 108 YIKGERITYEQYH---KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDE 184 (320)
T ss_dssp CCCCBCCCHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ecCCccccccccc---cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 9999888643321 24566667777788888887773221
Q ss_pred ----------------------CCeEEcCCCCCCeeecCCCcEEEEeeccccc
Q 005760 511 ----------------------AQVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 541 (678)
Q Consensus 511 ----------------------~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~ 541 (678)
..++|+|++|.||+++.++.+.++||+.+..
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 185 MLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred chHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 2359999999999999976679999998854
No 417
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=3.2e-08 Score=96.86 Aligned_cols=87 Identities=23% Similarity=0.320 Sum_probs=43.2
Q ss_pred ccCCCCCcE--EEccCCccCCcCCh----hhhccCCCCEEEccCCcCCC--CCCCcccCCCCccEEecCCCcCCCCChhh
Q 005760 120 IGNLTNLTI--IYLGGNKLNGSIPS----TLGKLQKLQGLGLENNKLEG--SIPDSICHSDELYKLELGGNKLSGSIPEC 191 (678)
Q Consensus 120 ~~~l~~L~~--L~l~~N~l~~~~~~----~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~N~i~~~~~~~ 191 (678)
|...+.|.. ++++.|+.. .++. ...++++|++|+|++|+|++ .+|..+..+++|+.|+|++|.|++. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 444555555 556666433 2222 22345666666666666664 2234444556666666666665533 22
Q ss_pred hhccc--cccceeccccccc
Q 005760 192 FNNLA--SLRILLLGSNELT 209 (678)
Q Consensus 192 ~~~l~--~L~~L~l~~N~l~ 209 (678)
+..+. +|++|+|++|.+.
T Consensus 214 l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTG
T ss_pred hhhcccCCcceEEccCCcCc
Confidence 22222 4444444444443
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=4.2e-08 Score=96.07 Aligned_cols=80 Identities=28% Similarity=0.319 Sum_probs=38.8
Q ss_pred ccccccceecccccccccc---ccccccccccEEEecCCcccCCCCccccccccccccccCcccccEEEccCCcCCCcch
Q 005760 194 NLASLRILLLGSNELTSIP---LTFWNLKDILYLNFSSNFFTGPLPLEIGNLKIARIDSCDLISLISLNLSNNNLSGAIP 270 (678)
Q Consensus 194 ~l~~L~~L~l~~N~l~~l~---~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~~~~~~~~~~~L~~L~L~~N~l~~~~~ 270 (678)
++++|+.|+|++|+|+.++ ..+..+++|+.|+|++|.|++. ..+..++ .+ +|++|+|++|.+++..|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~-------~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK-------GL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT-------TS-CCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc-------cC-CcceEEccCCcCccccC
Confidence 3455555555555555433 2344555555555555555533 1222221 12 45566666665553222
Q ss_pred -------HHHhcccCCCcee
Q 005760 271 -------ASLEKLSYLKDLN 283 (678)
Q Consensus 271 -------~~~~~l~~L~~L~ 283 (678)
..+..+|+|+.||
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 2344556655553
No 419
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.30 E-value=2.5e-06 Score=85.23 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=60.6
Q ss_pred CCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCc---cceeeeeeeecCCeEEEEEEecCC
Q 005760 396 ENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHR---NIIKVISSCSNEEFKALVLEYMPH 472 (678)
Q Consensus 396 ~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~~~~~~~~~~~~~lv~e~~~~ 472 (678)
..+.|+.|.++.||++...+|+.+++|+...........+..|++.++.+++. .+.+++++. ..++||||+++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 35789999999999999888999999997543333446789999999999865 467777763 35899999999
Q ss_pred CCH
Q 005760 473 GSL 475 (678)
Q Consensus 473 ~~L 475 (678)
+++
T Consensus 95 ~~~ 97 (288)
T 3d1u_A 95 RPP 97 (288)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 420
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.30 E-value=2.8e-06 Score=84.23 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=96.5
Q ss_pred cccCCCce-eEEEEEeC-CCcEEEEEEeecccCchhhhHHHHHHHHHhCC-CccceeeeeeeecCCeEEEEEEecCCCCH
Q 005760 399 LIGRGSFG-SVFKARLG-DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-HRNIIKVISSCSNEEFKALVLEYMPHGSL 475 (678)
Q Consensus 399 ~ig~G~~g-~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~L 475 (678)
.+..|..| .||+.... ++..+++|+-... ....+..|...++.+. +-.+.++++++.+.+..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 45556665 68998754 5678999986532 3456788999998875 33366788888888899999999999888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCC----------------------------------------------
Q 005760 476 EKYLHSSNYILDIYQRLNIMIDVASALEYLHFGY---------------------------------------------- 509 (678)
Q Consensus 476 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~---------------------------------------------- 509 (678)
.+...... .....+..+++..+..||...
T Consensus 108 ~~~~~~~~-----~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (272)
T 4gkh_A 108 FQVLEEYP-----DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKE 182 (272)
T ss_dssp HHHHHHCG-----GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHH
T ss_pred cccccCCH-----HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHH
Confidence 77654321 122345566666666666210
Q ss_pred ---------CCCeEEcCCCCCCeeecCCCcEEEEeecccc
Q 005760 510 ---------SAQVIHCDLKPSNVLLDDNMVAHLSDFGIAK 540 (678)
Q Consensus 510 ---------~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~ 540 (678)
...++|+|+.+.||++++++.+-|+||+.+.
T Consensus 183 l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 183 MHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 1137999999999999988777899998874
No 421
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.27 E-value=2.6e-06 Score=86.15 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=92.5
Q ss_pred CccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCc---cceeeeeeee-cCCeEEEEEEecCC
Q 005760 397 NNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHR---NIIKVISSCS-NEEFKALVLEYMPH 472 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~~~~~~~-~~~~~~lv~e~~~~ 472 (678)
.+.++.|....||+. +..+++|+... ......+..|.++++.+.+. .+.+++.++. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 456888888999988 56788888532 23446788999999998742 3556666663 45567899999999
Q ss_pred CCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcC--------------------------------------------
Q 005760 473 GSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFG-------------------------------------------- 508 (678)
Q Consensus 473 ~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-------------------------------------------- 508 (678)
.++.+.... .++......++.+++..++.||..
T Consensus 98 ~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 98 QILGEDGMA---VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp EECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred eECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 887653211 123344444455555555555421
Q ss_pred -------------CCCCeEEcCCCCCCeeecC---CCcE-EEEeeccccc
Q 005760 509 -------------YSAQVIHCDLKPSNVLLDD---NMVA-HLSDFGIAKL 541 (678)
Q Consensus 509 -------------~~~~ivH~dl~~~Nill~~---~~~~-kl~Dfg~~~~ 541 (678)
....++|+|+++.||+++. ++.+ .|+||+.+..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 1345799999999999987 4554 8999998753
No 422
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.12 E-value=3.9e-06 Score=86.92 Aligned_cols=80 Identities=8% Similarity=-0.013 Sum_probs=56.4
Q ss_pred Cccc-cCCCceeEEEEEeC-------CCcEEEEEEeeccc---CchhhhHHHHHHHHHhCCC---ccceeeeeeeecC--
Q 005760 397 NNLI-GRGSFGSVFKARLG-------DGMEVAMKVFNLQY---GRVFKSFDVECEMMKSIRH---RNIIKVISSCSNE-- 460 (678)
Q Consensus 397 ~~~i-g~G~~g~V~~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h---~niv~~~~~~~~~-- 460 (678)
.+.| +.|....+|+.... ++..+++|+..... ......+..|+.+++.+.. -.+.+++.++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88889999998753 26778999865432 1113567889999988852 2466778777655
Q ss_pred -CeEEEEEEecCCCCHH
Q 005760 461 -EFKALVLEYMPHGSLE 476 (678)
Q Consensus 461 -~~~~lv~e~~~~~~L~ 476 (678)
+..++||||++|..+.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 3568999999987654
No 423
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.05 E-value=9.1e-06 Score=84.09 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=57.2
Q ss_pred CCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCcc--ceeeeeeeecC-CeEEEEEEec
Q 005760 394 FSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRN--IIKVISSCSNE-EFKALVLEYM 470 (678)
Q Consensus 394 ~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~~~~~-~~~~lv~e~~ 470 (678)
....+.++.|....+|+... ++..+++|+.... ..+..|..+++.+.... +.+++.++... +..++||||+
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l 116 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRA 116 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECC
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEec
Confidence 34456789999999999886 5788999987422 35788999999886533 45667666554 5689999999
Q ss_pred CCCCHH
Q 005760 471 PHGSLE 476 (678)
Q Consensus 471 ~~~~L~ 476 (678)
+|.++.
T Consensus 117 ~G~~l~ 122 (362)
T 3ovc_A 117 QGVTLQ 122 (362)
T ss_dssp CSEETT
T ss_pred CCCCcc
Confidence 886553
No 424
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.03 E-value=1.2e-06 Score=81.09 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=56.4
Q ss_pred CCCCCEEecCCC-ccccc----CCccccCCCCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCCCcccCChhh
Q 005760 20 ASKLSILELSDN-SFSGF----IPNTFGNLRNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTS 94 (678)
Q Consensus 20 l~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 94 (678)
-+.|++|+|++| +|... +.+++...+.|+.|+|++|.|++.... .+.+.+...+.|+.|+|+.|.|+......
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~-alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a- 117 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR-GLIELIETSPSLRVLNVESNFLTPELLAR- 117 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT-THHHHHHHCSSCCEEECCSSBCCHHHHHH-
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH-HHHHHHhcCCccCeEecCCCcCCHHHHHH-
Confidence 344555555553 44321 233444445555555555555443322 23334444455555555555554332222
Q ss_pred hhcccccccEEEcccccccccCCccccCCCCCcEEEccCCc---cCCc----CChhhhccCCCCEEEccCCcCC
Q 005760 95 VGNLSHSLEYFEMAYCNVSGGIPEEIGNLTNLTIIYLGGNK---LNGS----IPSTLGKLQKLQGLGLENNKLE 161 (678)
Q Consensus 95 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~---l~~~----~~~~~~~l~~L~~L~L~~n~i~ 161 (678)
+.+.+..-+.|++|+|++|. +... +..++..-+.|+.|+++.|.+.
T Consensus 118 ---------------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 ---------------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp ---------------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred ---------------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 22334445567777776542 2211 1234445567777777766543
No 425
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=2.6e-06 Score=77.22 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=49.0
Q ss_pred CCCCEEEccCccCCCCccchhhcccccCCCCCcEEECccCC-CcccCChhhhhcc---cccccEEEccccc-ccccCCcc
Q 005760 45 RNLQALRLSNNYLTSSTLELSFLSSLSNCKSLTLISFSNNP-LDGILPKTSVGNL---SHSLEYFEMAYCN-VSGGIPEE 119 (678)
Q Consensus 45 ~~L~~L~l~~n~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~l---~~~L~~L~l~~n~-l~~~~~~~ 119 (678)
.+|+.|||++|.|++... ..+.++++|+.|+|++|. |++..-.. +..+ .++|++|+|++|. +++..-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 467777777777665443 246677777777777774 44322111 2221 1246666666663 55444444
Q ss_pred ccCCCCCcEEEccCCc
Q 005760 120 IGNLTNLTIIYLGGNK 135 (678)
Q Consensus 120 ~~~l~~L~~L~l~~N~ 135 (678)
+..+++|++|+|+++.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 5666777777777664
No 426
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.00 E-value=3.8e-06 Score=72.69 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=48.2
Q ss_pred cccEEEccCCcCCCcchHHHhcccCCCceecccccccccCCCCCccccccccc--cccCccccCCCC
Q 005760 254 SLISLNLSNNNLSGAIPASLEKLSYLKDLNLSFNKLEGEIPRGGSFGNFSAES--FEGNELLCGSPN 318 (678)
Q Consensus 254 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~l~~~~--~~~n~~~c~~~~ 318 (678)
+|+.|+|++|+|+.+.+..|..+++|+.|+|++|||.|++...+...++.... .......|..|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~~~~~C~~P~ 98 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPP 98 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGGGTTCBCCBST
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccccccCcEeCcCh
Confidence 78899999999988888888999999999999999999888655444443221 123456676664
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=1.5e-06 Score=78.69 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=5.9
Q ss_pred ccccccEEEecCC
Q 005760 217 NLKDILYLNFSSN 229 (678)
Q Consensus 217 ~l~~L~~L~l~~N 229 (678)
++++|+.|+++++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 3444444444444
No 428
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.87 E-value=3.9e-06 Score=77.55 Aligned_cols=125 Identities=14% Similarity=0.217 Sum_probs=81.9
Q ss_pred CccccCCCCCCEEEccCc-cCCCCccchhhcccccCCCCCcEEECccCCCcccCChhhhhcccccccEEEcccccccccC
Q 005760 38 PNTFGNLRNLQALRLSNN-YLTSSTLELSFLSSLSNCKSLTLISFSNNPLDGILPKTSVGNLSHSLEYFEMAYCNVSGGI 116 (678)
Q Consensus 38 ~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~ 116 (678)
...+.+-+.|++|+|++| .|...... .+.+++.....|+.|+|++|+|....-. .+
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~-~la~aL~~N~~L~~L~L~~n~igd~ga~----------------------al 90 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIR-SLIEAACNSKHIEKFSLANTAISDSEAR----------------------GL 90 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHH-HHHHHHTTCSCCCEEECTTSCCBHHHHT----------------------TH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHH-HHHHHHhhCCCcCEEEccCCCCChHHHH----------------------HH
Confidence 344455677777777774 66543322 3455666677777777777777533211 22
Q ss_pred CccccCCCCCcEEEccCCccCCcCCh----hhhccCCCCEEEccCCcC---CC----CCCCcccCCCCccEEecCCCcCC
Q 005760 117 PEEIGNLTNLTIIYLGGNKLNGSIPS----TLGKLQKLQGLGLENNKL---EG----SIPDSICHSDELYKLELGGNKLS 185 (678)
Q Consensus 117 ~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~L~~n~i---~~----~~~~~~~~l~~L~~L~l~~N~i~ 185 (678)
.+.+..-+.|++|+|++|.|...... ++..-+.|++|+|++|.. .. .+...+..-+.|+.|+++.|.+.
T Consensus 91 A~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 91 IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 34555678899999999999744333 444557799999997643 32 13346677789999999988765
No 429
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.82 E-value=7.5e-05 Score=78.43 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=49.5
Q ss_pred CccccCCCceeEEEEEeC-CCcEEEEEEeecccC-------chhhhHHHHHHHHHhCCC--cc-ceeeeeeeecCCeEEE
Q 005760 397 NNLIGRGSFGSVFKARLG-DGMEVAMKVFNLQYG-------RVFKSFDVECEMMKSIRH--RN-IIKVISSCSNEEFKAL 465 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~h--~n-iv~~~~~~~~~~~~~l 465 (678)
.+.+|.|..+.||++... +++.+++|....... ...+.+..|.++++.+.. |. +.+++.+. .+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d--~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--TEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc--CCccEE
Confidence 467999999999999754 568899998643211 123456789999887742 43 34555443 344579
Q ss_pred EEEecCCC
Q 005760 466 VLEYMPHG 473 (678)
Q Consensus 466 v~e~~~~~ 473 (678)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999763
No 430
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.73 E-value=6.4e-05 Score=77.13 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=78.4
Q ss_pred ccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCC-----Cccceeee-e--eeecCCeEEEEEEe
Q 005760 398 NLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-----HRNIIKVI-S--SCSNEEFKALVLEY 469 (678)
Q Consensus 398 ~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~~~-~--~~~~~~~~~lv~e~ 469 (678)
+.|+.|..+.||+....+| .+++|+.... ...+..|..+++.+. .|.++... | +....+..++||||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 4566677899999987655 4889988642 133444556555553 23333311 1 11245677899999
Q ss_pred cCCCCHH-----------H---Hhhh--CCC-----------CCCHHHH-------------------------------
Q 005760 470 MPHGSLE-----------K---YLHS--SNY-----------ILDIYQR------------------------------- 491 (678)
Q Consensus 470 ~~~~~L~-----------~---~l~~--~~~-----------~~~~~~~------------------------------- 491 (678)
++|.++. + .+|. ... ...|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986432 1 1111 000 0112110
Q ss_pred HHHHHHHHHHHHHHhc----------CCCCCeEEcCCCCCCeeecCCCcEEEEeecccc
Q 005760 492 LNIMIDVASALEYLHF----------GYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAK 540 (678)
Q Consensus 492 ~~i~~~i~~~l~~LH~----------~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~ 540 (678)
..+..++..++.+|+. .....++|+|+++.||+++.++.+.++||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 0111223345666652 025789999999999999888899999998764
No 431
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.56 E-value=0.00029 Score=70.82 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=90.8
Q ss_pred CCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCC---CccceeeeeeeecCCeEEEEEEecCC
Q 005760 396 ENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR---HRNIIKVISSCSNEEFKALVLEYMPH 472 (678)
Q Consensus 396 ~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~~~lv~e~~~~ 472 (678)
..+.|+.|....+|+... ++..+++|+.... ....+..|...++.+. ...+.+++.++...+..++||||+++
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence 346789999999999986 4678889987632 3466788999988874 35678888888878889999999998
Q ss_pred CCHH--------H---HhhhCCC---------------------CCCHHHHH---HHH----------------HHHHHH
Q 005760 473 GSLE--------K---YLHSSNY---------------------ILDIYQRL---NIM----------------IDVASA 501 (678)
Q Consensus 473 ~~L~--------~---~l~~~~~---------------------~~~~~~~~---~i~----------------~~i~~~ 501 (678)
..+. + .++.... .-+|.... ++. .+++..
T Consensus 116 ~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~ 195 (312)
T 3jr1_A 116 SKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQI 195 (312)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 7541 1 1222110 01333221 011 112212
Q ss_pred -HHHHh-cCCCCCeEEcCCCCCCeeecCCCcEEEEee
Q 005760 502 -LEYLH-FGYSAQVIHCDLKPSNVLLDDNMVAHLSDF 536 (678)
Q Consensus 502 -l~~LH-~~~~~~ivH~dl~~~Nill~~~~~~kl~Df 536 (678)
...|. ......++|+|+.+.|++++.++ +.+.|+
T Consensus 196 l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~ 231 (312)
T 3jr1_A 196 VADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNP 231 (312)
T ss_dssp HHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSC
T ss_pred HHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcC
Confidence 23343 12356799999999999999887 888887
No 432
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.54 E-value=0.00026 Score=70.58 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=57.4
Q ss_pred CCCCCccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCc---cceeeeeeeecCCeEEEEEEe
Q 005760 393 GFSENNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHR---NIIKVISSCSNEEFKALVLEY 469 (678)
Q Consensus 393 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~~~~~~~~~~~~~lv~e~ 469 (678)
...-.+.+|.|..+.||+.+..+|+.|++|+...........+..|+..|+.+.-. .+.+++++. ..++||||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~ 91 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW 91 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence 34456789999999999999999999999987654444445678899999988422 244555542 23689999
Q ss_pred cCCCC
Q 005760 470 MPHGS 474 (678)
Q Consensus 470 ~~~~~ 474 (678)
++++.
T Consensus 92 l~~~~ 96 (288)
T 3f7w_A 92 VDERP 96 (288)
T ss_dssp CCCCC
T ss_pred ecccC
Confidence 98764
No 433
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.29 E-value=0.0008 Score=71.04 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=47.7
Q ss_pred CCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCC---CCCccchHHHHHHHHHH
Q 005760 510 SAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEG---RVSANGDVYSFGIMLME 586 (678)
Q Consensus 510 ~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~---~~~~~~DvwslGv~l~e 586 (678)
...++|+|+++.||+++.++ ++++||+.+..-.+. .........-...|.+|+..... ......++.+....+|+
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~-~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMG-FDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWN 308 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHH-HHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchH-HHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHH
Confidence 68899999999999999876 999999988643211 00000000011345666544311 11223455677888888
Q ss_pred HHcCC
Q 005760 587 TFTRK 591 (678)
Q Consensus 587 ll~g~ 591 (678)
.+.+.
T Consensus 309 ~y~~~ 313 (420)
T 2pyw_A 309 LFNKR 313 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 434
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.04 E-value=0.0012 Score=66.96 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=84.8
Q ss_pred CHHHHHHhhcCCCC-----CccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCcc--ceeeee
Q 005760 383 SYLELCRATDGFSE-----NNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRN--IIKVIS 455 (678)
Q Consensus 383 ~~~~~~~~~~~~~~-----~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~ 455 (678)
+.+++...-..|.. .+.|+.|....+|+....+| .+++|+.... ...+.+..|..+++.+.... +.+++.
T Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~~ 84 (322)
T 2ppq_A 8 TEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPLP 84 (322)
T ss_dssp CHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCC
T ss_pred CHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCcccC
Confidence 34444444455654 24567788899999987655 6889988642 12345667888777764212 233332
Q ss_pred e------eecCCeEEEEEEecCCCCHHH--------------HhhhC----CCC----CC---HHHHHH-----------
Q 005760 456 S------CSNEEFKALVLEYMPHGSLEK--------------YLHSS----NYI----LD---IYQRLN----------- 493 (678)
Q Consensus 456 ~------~~~~~~~~lv~e~~~~~~L~~--------------~l~~~----~~~----~~---~~~~~~----------- 493 (678)
. ....+..+++++|++|..+.. .++.. ... .. |.....
T Consensus 85 ~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 164 (322)
T 2ppq_A 85 RKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEK 164 (322)
T ss_dssp BTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTST
T ss_pred CCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhh
Confidence 1 122356789999998864311 01111 000 01 111000
Q ss_pred -HHHHHHHHHHHHhc----CCCCCeEEcCCCCCCeeecCCCcEEEEeecccc
Q 005760 494 -IMIDVASALEYLHF----GYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAK 540 (678)
Q Consensus 494 -i~~~i~~~l~~LH~----~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~ 540 (678)
+...+...+++++. ....+++|+|+.+.||++++++.+.++||+.+.
T Consensus 165 ~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 165 GLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp THHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 00113334444442 124579999999999999987666899998764
No 435
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.01 E-value=0.0021 Score=64.46 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=45.6
Q ss_pred CccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCccc-eeeeeeeecCCeEEEEEEec-CCCC
Q 005760 397 NNLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNI-IKVISSCSNEEFKALVLEYM-PHGS 474 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~-~~~~ 474 (678)
.+.|+.|....+|+. ..+++|+...... .......|+.+++.+....+ .++++++.+ .-++++||+ ++.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~-~~~~r~~E~~~l~~l~~~g~~P~~~~~~~~--~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTE-EYINRANEAVAAREAAKAGVSPEVLHVDPA--TGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEECTT--TCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCcc-ceeCHHHHHHHHHHHHHcCCCCceEEEECC--CCEEEEeecCCCcc
Confidence 678999999999998 5688998764322 22334568888877742222 455555433 335899999 6644
Q ss_pred H
Q 005760 475 L 475 (678)
Q Consensus 475 L 475 (678)
+
T Consensus 95 l 95 (301)
T 3dxq_A 95 M 95 (301)
T ss_dssp C
T ss_pred C
Confidence 4
No 436
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.92 E-value=0.007 Score=56.07 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=69.5
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCeeecCCCcEEEEeeccccccCCCCCcceeec
Q 005760 474 SLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTREDQSTIQTQ 553 (678)
Q Consensus 474 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~ 553 (678)
+|.+.+...+.+++++++|.++.|.+.+|.-.-. ++.-..+=+.|..|++..+|.|...+ +.+.
T Consensus 34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~--~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~------------- 97 (229)
T 2yle_A 34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAAR--RRQPRHRVRSAAQIRVWRDGAVTLAP-AADD------------- 97 (229)
T ss_dssp EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCSGGGEEEETTSCEEECC-C----------------
T ss_pred cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhh--cccCCceecCCcceEEecCCceeccc-cccc-------------
Confidence 8999999999999999999999999999877721 11111223456889999999998763 1110
Q ss_pred ccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCC
Q 005760 554 TLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPT 594 (678)
Q Consensus 554 ~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~ 594 (678)
.....+.|||... ...+.+.-|||+|+++|.-+-...|-
T Consensus 98 -~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~e 136 (229)
T 2yle_A 98 -AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLKE 136 (229)
T ss_dssp ----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred -ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCCc
Confidence 1123466888763 35567889999999999999766553
No 437
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.92 E-value=0.0054 Score=62.31 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=74.0
Q ss_pred ccccCCCcee-EEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCC--ccceeeeeeeecCCeEEEEEEecCCCC
Q 005760 398 NLIGRGSFGS-VFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRH--RNIIKVISSCSNEEFKALVLEYMPHGS 474 (678)
Q Consensus 398 ~~ig~G~~g~-V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~~~~~~~~~~~~~lv~e~~~~~~ 474 (678)
+.++.|+... +|+....+|..+++|...... ...+..|+.+++.+.. -.+.+++.+..+.+ +++||++.+..
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~---~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE---GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT---TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC---CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence 4566665554 677776446777777654321 1445567777777642 23455666644433 68999997766
Q ss_pred HHHHhhhCC-------------------------CCCCHHHHH-------H-H------------HHHHHHHHHHHh---
Q 005760 475 LEKYLHSSN-------------------------YILDIYQRL-------N-I------------MIDVASALEYLH--- 506 (678)
Q Consensus 475 L~~~l~~~~-------------------------~~~~~~~~~-------~-i------------~~~i~~~l~~LH--- 506 (678)
+.+++.... ..++..... . + ...+...+..+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 654432110 011111100 0 0 001111222221
Q ss_pred cCCCCCeEEcCCCCCCeeecCC----CcEEEEeeccccc
Q 005760 507 FGYSAQVIHCDLKPSNVLLDDN----MVAHLSDFGIAKL 541 (678)
Q Consensus 507 ~~~~~~ivH~dl~~~Nill~~~----~~~kl~Dfg~~~~ 541 (678)
......++|+|+.+.||+++.+ +.+.++||+.+..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1125679999999999999874 6899999998864
No 438
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.79 E-value=0.0031 Score=65.07 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=81.8
Q ss_pred CccccCCCceeEEEEEeC--------CCcEEEEEEeecccCchhhhHHHHHHHHHhCC-CccceeeeeeeecCCeEEEEE
Q 005760 397 NNLIGRGSFGSVFKARLG--------DGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR-HRNIIKVISSCSNEEFKALVL 467 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~ 467 (678)
.+.+..|....+|+.... ++..+++|+.... ......+.+|.++++.+. +.-..++++.+.+ .+|+
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~ 129 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLE 129 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEE
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEE
Confidence 456778889999999864 3578999986432 123455678999998874 2223566666654 2899
Q ss_pred EecCCCCHHH--------------H---hhhCC----CCCC--HHHHHHHHHHHHH-------------------HHHH-
Q 005760 468 EYMPHGSLEK--------------Y---LHSSN----YILD--IYQRLNIMIDVAS-------------------ALEY- 504 (678)
Q Consensus 468 e~~~~~~L~~--------------~---l~~~~----~~~~--~~~~~~i~~~i~~-------------------~l~~- 504 (678)
||++|.++.. . +|... .... +.++.++..++.. .+..
T Consensus 130 e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 209 (379)
T 3feg_A 130 QYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNL 209 (379)
T ss_dssp ECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHH
T ss_pred EEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHH
Confidence 9998855421 0 11111 1122 2344444433321 1222
Q ss_pred ---Hhc-CCCCCeEEcCCCCCCeeecCC----CcEEEEeecccc
Q 005760 505 ---LHF-GYSAQVIHCDLKPSNVLLDDN----MVAHLSDFGIAK 540 (678)
Q Consensus 505 ---LH~-~~~~~ivH~dl~~~Nill~~~----~~~kl~Dfg~~~ 540 (678)
|.. .....++|+|+.+.||+++.+ +.+.++||..+.
T Consensus 210 ~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 210 RKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 221 123568999999999999876 789999998874
No 439
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.74 E-value=0.0013 Score=69.36 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=49.5
Q ss_pred CccccCCCceeEEEEEeCC--------CcEEEEEEeecccCchhhhHHHHHHHHHhCCCccc-eeeeeeeecCCeEEEEE
Q 005760 397 NNLIGRGSFGSVFKARLGD--------GMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNI-IKVISSCSNEEFKALVL 467 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~ 467 (678)
.+.|+.|....+|+....+ +..+++|+.... ...+.+..|..+++.+...++ .++++.+.+ .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence 3578888899999998653 578999998431 111455679998888753333 566766553 2899
Q ss_pred EecCCCC
Q 005760 468 EYMPHGS 474 (678)
Q Consensus 468 e~~~~~~ 474 (678)
||++|.+
T Consensus 152 e~l~G~~ 158 (429)
T 1nw1_A 152 EYIPSRP 158 (429)
T ss_dssp CCCCEEE
T ss_pred EEeCCcc
Confidence 9998643
No 440
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.74 E-value=0.0021 Score=55.20 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=16.6
Q ss_pred ccEEecCCCcCCCCChhhhhccccccceecccccc
Q 005760 174 LYKLELGGNKLSGSIPECFNNLASLRILLLGSNEL 208 (678)
Q Consensus 174 L~~L~l~~N~i~~~~~~~~~~l~~L~~L~l~~N~l 208 (678)
|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444444444444444555555555543
No 441
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.73 E-value=0.0034 Score=66.60 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=49.0
Q ss_pred CccccCCCceeEEEEEeCC-CcEEEEEEeecccCchhhhHHHHHHHHHhCCCccc-eeeeeeeecCCeEEEEEEecCCCC
Q 005760 397 NNLIGRGSFGSVFKARLGD-GMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRNI-IKVISSCSNEEFKALVLEYMPHGS 474 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~~~~ 474 (678)
.+.|+.|....+|+....+ +..+++|+....... .-....|..+++.+...++ .++++.+.. .+|+||++|.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~-~idR~~E~~vl~~L~~~gl~P~ll~~~~~----G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE-IINREREKKISCILYNKNIAKKIYVFFTN----GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCS-CSCHHHHHHHHHHHTTSSSBCCEEEEETT----EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhh-hcCHHHHHHHHHHHHhcCCCCCEEEEeCC----eEEEEeeCCcc
Confidence 3578889899999998764 578899987543222 2223689999998865444 466776632 25999998744
Q ss_pred H
Q 005760 475 L 475 (678)
Q Consensus 475 L 475 (678)
+
T Consensus 188 l 188 (458)
T 2qg7_A 188 L 188 (458)
T ss_dssp C
T ss_pred C
Confidence 3
No 442
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.57 E-value=0.012 Score=59.39 Aligned_cols=139 Identities=12% Similarity=0.171 Sum_probs=80.7
Q ss_pred ccccCCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCCCcc--ceeeeee-----eecCCeEEEEEEec
Q 005760 398 NLIGRGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRN--IIKVISS-----CSNEEFKALVLEYM 470 (678)
Q Consensus 398 ~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~-----~~~~~~~~lv~e~~ 470 (678)
+.++ |....||+....+|+.+++|+..... .....+..|..+++.+.... +.+++.. ....+..++|+||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 4566 88899999887778889999986432 23356677888887774222 3444433 11244567899999
Q ss_pred CCCCHH-----H------H---hhh----C----CCCCCHHHH----------------------HHHHHHHHHHHHHHh
Q 005760 471 PHGSLE-----K------Y---LHS----S----NYILDIYQR----------------------LNIMIDVASALEYLH 506 (678)
Q Consensus 471 ~~~~L~-----~------~---l~~----~----~~~~~~~~~----------------------~~i~~~i~~~l~~LH 506 (678)
+|..+. . . ++. . ....++... ...+.+++..+...-
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 875321 1 1 111 0 001121110 011112222222221
Q ss_pred c-CCCCCeEEcCCCCCCeeecCCCcEEEEeecccc
Q 005760 507 F-GYSAQVIHCDLKPSNVLLDDNMVAHLSDFGIAK 540 (678)
Q Consensus 507 ~-~~~~~ivH~dl~~~Nill~~~~~~kl~Dfg~~~ 540 (678)
. .....++|+|+++.||+++ + .+.++||+.+.
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~ 222 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR 222 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence 1 1246689999999999999 4 89999998774
No 443
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.41 E-value=0.0032 Score=65.07 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=44.9
Q ss_pred CccccCCCceeEEEEEeCC---------CcEEEEEEeecccCchhhhHHHHHHHHHhCCCcc-ceeeeeeeecCCeEEEE
Q 005760 397 NNLIGRGSFGSVFKARLGD---------GMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRN-IIKVISSCSNEEFKALV 466 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~~~~lv 466 (678)
.+.++.|....+|+....+ +..+++|+...... .......|..+++.+...+ ..++++.+. -++|
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~~----~~~v 112 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIAPQLLNTFN----GGRI 112 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSSCCEEEEET----TEEE
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCCCceEEecC----CcEE
Confidence 3567888889999998654 26888998754322 2223467888888875333 345665542 2589
Q ss_pred EEecCCCC
Q 005760 467 LEYMPHGS 474 (678)
Q Consensus 467 ~e~~~~~~ 474 (678)
+||++|.+
T Consensus 113 ~e~i~G~~ 120 (369)
T 3c5i_A 113 EEWLYGDP 120 (369)
T ss_dssp EECCCSEE
T ss_pred EEEecCCc
Confidence 99998754
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.07 E-value=0.051 Score=55.18 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=42.9
Q ss_pred CCCceeEEEEEeCCCcEEEEEEeecccCchhhhHHHHHHHHHhCC---Cccceeeeee------eecCCeEEEEEEecCC
Q 005760 402 RGSFGSVFKARLGDGMEVAMKVFNLQYGRVFKSFDVECEMMKSIR---HRNIIKVISS------CSNEEFKALVLEYMPH 472 (678)
Q Consensus 402 ~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~------~~~~~~~~lv~e~~~~ 472 (678)
.|....||+....+| .+++|+...... ..|...++.+. -|.+.+++.. ....+..++||+|++|
T Consensus 33 ~g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G 105 (339)
T 3i1a_A 33 ADTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHA 105 (339)
T ss_dssp SCSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCC
T ss_pred CccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCC
Confidence 333689999987777 899998764321 34666665553 2224444432 2335678899999998
Q ss_pred CCH
Q 005760 473 GSL 475 (678)
Q Consensus 473 ~~L 475 (678)
..+
T Consensus 106 ~~~ 108 (339)
T 3i1a_A 106 PNG 108 (339)
T ss_dssp CBT
T ss_pred CcC
Confidence 655
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.62 E-value=0.022 Score=58.89 Aligned_cols=140 Identities=16% Similarity=0.180 Sum_probs=81.8
Q ss_pred CccccCCCceeEEEEEeCC--------CcEEEEEEeecccCc---------h---------hhhHHHHHHHHHhCC-Ccc
Q 005760 397 NNLIGRGSFGSVFKARLGD--------GMEVAMKVFNLQYGR---------V---------FKSFDVECEMMKSIR-HRN 449 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~---------~---------~~~~~~e~~~l~~l~-h~n 449 (678)
.+.|..|-...+|+...++ +..|.+++....... . .+....|..+++.+. +.-
T Consensus 57 v~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi 136 (401)
T 3f2s_A 57 ISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSL 136 (401)
T ss_dssp EEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCC
Confidence 3567678889999998653 367899987543211 0 112234888888775 333
Q ss_pred ceeeeeeeecCCeEEEEEEecCCCCHHH--H---------------hhhCC----CCCC--HHHHHHHHHHHH-------
Q 005760 450 IIKVISSCSNEEFKALVLEYMPHGSLEK--Y---------------LHSSN----YILD--IYQRLNIMIDVA------- 499 (678)
Q Consensus 450 iv~~~~~~~~~~~~~lv~e~~~~~~L~~--~---------------l~~~~----~~~~--~~~~~~i~~~i~------- 499 (678)
..++++++..+ +|+||++|.+|.. + +|... .... +..+.++..++.
T Consensus 137 ~Pkl~~~~~~G----~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~ 212 (401)
T 3f2s_A 137 GPKLYGIFPQG----RLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEE 212 (401)
T ss_dssp SCCEEEEETTE----EEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSH
T ss_pred CCeEEEEeCCC----eEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcch
Confidence 45667776542 8999998754421 1 11111 1122 123333332221
Q ss_pred ---------------HHH----HHHhc-CCCCCeEEcCCCCCCeeecCC------CcEEEEeecccc
Q 005760 500 ---------------SAL----EYLHF-GYSAQVIHCDLKPSNVLLDDN------MVAHLSDFGIAK 540 (678)
Q Consensus 500 ---------------~~l----~~LH~-~~~~~ivH~dl~~~Nill~~~------~~~kl~Dfg~~~ 540 (678)
..+ .+|.. .....++|+|+.+.||+++.+ +.+.++||..+.
T Consensus 213 ~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 213 SRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 111 22321 124568999999999999876 789999998774
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.78 E-value=0.044 Score=57.29 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=49.1
Q ss_pred CccccCCCceeEEEEEeCC--------CcEEEEEEeecccCchhhhHHHHHHHHHhCCCcc-ceeeeeeeecCCeEEEEE
Q 005760 397 NNLIGRGSFGSVFKARLGD--------GMEVAMKVFNLQYGRVFKSFDVECEMMKSIRHRN-IIKVISSCSNEEFKALVL 467 (678)
Q Consensus 397 ~~~ig~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~~~~lv~ 467 (678)
.+.+..|-...+|+....+ +..+++|+..... ...-+..+|..+++.+...+ ..++++.+. -+.|+
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~ 149 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIE 149 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEE
Confidence 3567788889999998653 5789999875432 22234567888888875222 345555443 26899
Q ss_pred EecCCCCH
Q 005760 468 EYMPHGSL 475 (678)
Q Consensus 468 e~~~~~~L 475 (678)
||++|.++
T Consensus 150 efI~G~~l 157 (424)
T 3mes_A 150 EFIDGEPL 157 (424)
T ss_dssp ECCCSEEC
T ss_pred EEeCCccC
Confidence 99998653
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=91.90 E-value=0.11 Score=54.04 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=24.4
Q ss_pred CeEEcCCCCCCeee------cCCCcEEEEeecccc
Q 005760 512 QVIHCDLKPSNVLL------DDNMVAHLSDFGIAK 540 (678)
Q Consensus 512 ~ivH~dl~~~Nill------~~~~~~kl~Dfg~~~ 540 (678)
.++|+|+.+.||++ +++..++++||.+|.
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~ 279 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence 35799999999999 456789999998874
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=83.96 E-value=2.2 Score=39.31 Aligned_cols=122 Identities=11% Similarity=0.233 Sum_probs=79.6
Q ss_pred CCccceeeeeeeecCCeEEEEEEecC-CCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcCCCCCCee
Q 005760 446 RHRNIIKVISSCSNEEFKALVLEYMP-HGSLEKYLHSSNYILDIYQRLNIMIDVASALEYLHFGYSAQVIHCDLKPSNVL 524 (678)
Q Consensus 446 ~h~niv~~~~~~~~~~~~~lv~e~~~-~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl~~~Nil 524 (678)
.||+.+.. ..-.+.+.+.+.++.-+ +.++.. ++ ..+...+++++.+|+....+++ .+ +|--+.|+|++
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik----~~~~~eKlr~l~ni~~l~~~~~---~r--~tf~L~P~NL~ 111 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IK----SFTKNEKLRYLLNIKNLEEVNR---TR--YTFVLAPDELF 111 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GG----GSCHHHHHHHHHHGGGGGGGGG---SS--EECCCSGGGEE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HH----hcCHHHHHHHHHHHHHHHHHhc---Cc--eEEEEecceEE
Confidence 58887765 45556666555555433 223322 22 3678899999999998886665 22 68899999999
Q ss_pred ecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccchHHHHHHHHHHHHcCCCCCCcccCCcc
Q 005760 525 LDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGDVYSFGIMLMETFTRKKPTDEIFNGEM 602 (678)
Q Consensus 525 l~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~ell~g~~p~~~~~~~~~ 602 (678)
++.++.+++.-.|+-..+ +|. ..+...=.-.+=+++..+++++..|+.-..+..
T Consensus 112 f~~~~~p~i~~RGik~~l-------------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe~l~~G~l 165 (215)
T 4ann_A 112 FTRDGLPIAKTRGLQNVV-------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFDALVEGNL 165 (215)
T ss_dssp ECTTSCEEESCCEETTTB-------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHHHHHHSCG
T ss_pred EcCCCCEEEEEccCccCC-------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHHHHHcChH
Confidence 999999999876654322 221 111111233566788889999999876554433
No 449
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=78.82 E-value=0.98 Score=29.75 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=7.6
Q ss_pred cceeeeehhhhHHHHHHH
Q 005760 335 NAFLLGIVLPLSTVFMIV 352 (678)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~ 352 (678)
..+..+++..+.++++++
T Consensus 11 ~~IA~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVA 28 (44)
T ss_dssp SSSTHHHHHHHHHHHHHH
T ss_pred ceEEeehhHHHHHHHHHH
Confidence 344444444344433333
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=75.68 E-value=0.39 Score=50.80 Aligned_cols=60 Identities=8% Similarity=0.017 Sum_probs=17.3
Q ss_pred CCCccccCCCceeEEEEEeCC-CcEEEE------EEeecc--cCchhhhHHHHHHHHHhCCCccceeeeeee
Q 005760 395 SENNLIGRGSFGSVFKARLGD-GMEVAM------KVFNLQ--YGRVFKSFDVECEMMKSIRHRNIIKVISSC 457 (678)
Q Consensus 395 ~~~~~ig~G~~g~V~~~~~~~-~~~vav------K~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~ 457 (678)
.+.+.+| ||.||+|.+.. ..+||+ |..+.. ..+....+.+|..+++.++|||+++.+++.
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~ 213 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFK 213 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEE
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceE
Confidence 4456676 99999998753 468888 665432 123345678889999999999999887653
No 451
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=74.25 E-value=8.9 Score=35.42 Aligned_cols=114 Identities=12% Similarity=0.146 Sum_probs=74.9
Q ss_pred CCccceeeeeeeecCCeEEEEEEecCCC-CHHHHhhhCCCCCCHHHHHHHHHHHHHHHH-HHhcCCCCCeEEcCCCCCCe
Q 005760 446 RHRNIIKVISSCSNEEFKALVLEYMPHG-SLEKYLHSSNYILDIYQRLNIMIDVASALE-YLHFGYSAQVIHCDLKPSNV 523 (678)
Q Consensus 446 ~h~niv~~~~~~~~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~-~LH~~~~~~ivH~dl~~~Ni 523 (678)
.||+. -...-.+.+.+.+.++.-+++ ++.. ++ ..+...+++++.+|+.... +++ .-+|--+.|+|+
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~-i~----~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL 115 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAA-IR----KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENL 115 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHH-HH----TSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHH-HH----hcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceE
Confidence 57877 344446677766666654333 3433 32 2678889999998887766 554 346888999999
Q ss_pred eecCCCcEEEEeeccccccCCCCCcceeecccCCccccCccccCCCCCCccch-HHHHHHHHHHHHcCCCCCCc
Q 005760 524 LLDDNMVAHLSDFGIAKLLTREDQSTIQTQTLATIGYMAPEYGKEGRVSANGD-VYSFGIMLMETFTRKKPTDE 596 (678)
Q Consensus 524 ll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D-vwslGv~l~ell~g~~p~~~ 596 (678)
++|.++.+++.-.|.-..+ +|.-+ + ..| .-.+=+++..++.++..|+.
T Consensus 116 ~f~~~~~p~i~hRGi~~~l-------------------pP~e~-----~-ee~fl~qyKali~all~~K~~Fe~ 164 (219)
T 4ano_A 116 MFNRALEPFFLHVGVKESL-------------------PPDEW-----D-DERLLREVKATVLALTEGEYRFDE 164 (219)
T ss_dssp EECTTCCEEESCCEETTTB-------------------SSCSC-----C-HHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred EEeCCCcEEEEEcCCcccC-------------------CCCCC-----C-HHHHHHHHHHHHHHHHcCCCCHHH
Confidence 9999999999877664222 22211 1 112 23456778888888887764
No 452
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.70 E-value=6.1 Score=31.47 Aligned_cols=46 Identities=17% Similarity=0.049 Sum_probs=29.5
Q ss_pred ccccCCccccCCCCCcEEEccCCccCCcCChhhhccCCCCEEEccCC
Q 005760 112 VSGGIPEEIGNLTNLTIIYLGGNKLNGSIPSTLGKLQKLQGLGLENN 158 (678)
Q Consensus 112 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n 158 (678)
++.+....|.++++|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34445566777777777777654 33356667777777777776653
No 453
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=70.63 E-value=1.2 Score=29.23 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=6.4
Q ss_pred cceeeeehhhhHHHHH
Q 005760 335 NAFLLGIVLPLSTVFM 350 (678)
Q Consensus 335 ~~~~~~~~~~~~~~~~ 350 (678)
..+..+++..+..+++
T Consensus 10 ~aIA~gVVgGv~~v~i 25 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVI 25 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHHHHH
Confidence 3444444443333333
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.14 E-value=15 Score=29.15 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=33.5
Q ss_pred CCccCCcCChhhhccCCCCEEEccCCcCCCCCCCcccCCCCccEEecCCC
Q 005760 133 GNKLNGSIPSTLGKLQKLQGLGLENNKLEGSIPDSICHSDELYKLELGGN 182 (678)
Q Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~N 182 (678)
+..++.+...+|.++.+|+.+.|-.+ ++.....+|.++.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34556666677888888888877765 33355667777777777777654
No 455
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.44 E-value=20 Score=24.62 Aligned_cols=6 Identities=50% Similarity=0.484 Sum_probs=2.6
Q ss_pred cccCCC
Q 005760 361 RKRERG 366 (678)
Q Consensus 361 ~~~~~~ 366 (678)
.+|++.
T Consensus 39 FkR~~~ 44 (54)
T 2knc_A 39 FKRNRP 44 (54)
T ss_dssp TTTTCC
T ss_pred ccCCCC
Confidence 444443
No 456
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=30.04 E-value=2.6e+02 Score=30.05 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=49.5
Q ss_pred eeeeeeecCCeEEEEEEecCCCCHHHHhh----------hCCC------CCCHHHHHHHHHHHH--HHHHHHhcCCCCCe
Q 005760 452 KVISSCSNEEFKALVLEYMPHGSLEKYLH----------SSNY------ILDIYQRLNIMIDVA--SALEYLHFGYSAQV 513 (678)
Q Consensus 452 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~----------~~~~------~~~~~~~~~i~~~i~--~~l~~LH~~~~~~i 513 (678)
+.|.+........+ .|++++.++.+.+. +... ...+..+..++..+| ..+.|+= ||
T Consensus 403 ~~Y~Vipls~~~Gl-IE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YIL-----Gi 476 (614)
T 3ls8_A 403 TPYKVLATSTKHGF-MQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYIL-----GV 476 (614)
T ss_dssp CCCCEEESSSSEEE-EECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHH-----TC
T ss_pred eccEEEEecCCCce-EEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheee-----ec
Confidence 44555554444443 57776655554443 2111 112445555666555 4566665 22
Q ss_pred EEcCCCCCCeeecCCCcEEEEeecccc
Q 005760 514 IHCDLKPSNVLLDDNMVAHLSDFGIAK 540 (678)
Q Consensus 514 vH~dl~~~Nill~~~~~~kl~Dfg~~~ 540 (678)
+|=.++|||++.+|++.=+|||.+-
T Consensus 477 --gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 477 --GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp --CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred --cCCCCcceeEcCCCCEeeeehHHhh
Confidence 5778999999999999999999873
No 457
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=23.42 E-value=25 Score=22.10 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=8.7
Q ss_pred HHHHHHhhhhheeccccCC
Q 005760 347 TVFMIVVIFLIVKCRKRER 365 (678)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~ 365 (678)
+++++.+++.++.++++.|
T Consensus 19 vi~iisLIiLi~~w~qKPr 37 (39)
T 2l6w_A 19 VLTIISLIILIMLWQKKPR 37 (39)
Confidence 3334444444554555443
Done!