Query 005761
Match_columns 678
No_of_seqs 346 out of 1990
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 13:23:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1138 Predicted cleavage and 100.0 2E-110 5E-115 870.8 40.0 624 1-676 1-652 (653)
2 KOG1136 Predicted cleavage and 100.0 2.8E-89 6E-94 683.0 33.9 437 1-560 4-468 (501)
3 KOG1137 mRNA cleavage and poly 100.0 8.6E-85 1.9E-89 687.0 25.9 450 2-589 15-499 (668)
4 KOG1135 mRNA cleavage and poly 100.0 5.8E-79 1.3E-83 657.8 43.2 535 2-671 3-761 (764)
5 COG1782 Predicted metal-depend 100.0 2E-77 4.4E-82 626.7 32.8 417 1-536 181-636 (637)
6 TIGR03675 arCOG00543 arCOG0054 100.0 5.1E-72 1.1E-76 636.6 41.5 415 1-536 175-629 (630)
7 COG1236 YSH1 Predicted exonucl 100.0 1E-60 2.3E-65 524.2 36.9 399 1-535 1-426 (427)
8 TIGR00649 MG423 conserved hypo 100.0 1.3E-34 2.8E-39 320.3 30.3 381 1-538 1-419 (422)
9 COG0595 mRNA degradation ribon 99.9 2.6E-22 5.6E-27 223.7 29.0 384 1-540 9-431 (555)
10 PF10996 Beta-Casp: Beta-Casp 99.9 6.2E-23 1.3E-27 189.1 11.1 120 342-470 1-123 (126)
11 PRK11244 phnP carbon-phosphoru 99.6 2.2E-14 4.7E-19 148.0 13.1 160 1-272 1-185 (250)
12 TIGR02651 RNase_Z ribonuclease 99.5 1.7E-13 3.6E-18 145.1 10.5 137 2-238 1-149 (299)
13 PRK05184 pyrroloquinoline quin 99.5 4E-13 8.6E-18 142.2 12.2 176 1-273 1-220 (302)
14 PRK02113 putative hydrolase; P 99.4 1.2E-12 2.7E-17 135.1 11.5 167 1-273 1-191 (252)
15 TIGR02649 true_RNase_BN ribonu 99.4 9E-13 1.9E-17 139.9 10.6 135 3-237 1-150 (303)
16 TIGR03307 PhnP phosphonate met 99.4 2.5E-12 5.4E-17 131.8 11.6 126 14-249 26-153 (238)
17 PF13299 CPSF100_C: Cleavage a 99.4 1.8E-12 3.9E-17 123.9 8.4 117 545-671 1-161 (161)
18 TIGR02108 PQQ_syn_pqqB coenzym 99.3 3.7E-11 7.9E-16 127.0 13.2 125 89-273 74-220 (302)
19 PRK00685 metal-dependent hydro 99.3 7.2E-11 1.6E-15 119.9 14.8 130 1-250 1-144 (228)
20 PRK00055 ribonuclease Z; Revie 99.3 7.7E-12 1.7E-16 130.1 7.5 89 1-135 2-101 (270)
21 smart00849 Lactamase_B Metallo 99.1 1.1E-10 2.3E-15 113.3 8.5 139 12-250 3-144 (183)
22 PF12706 Lactamase_B_2: Beta-l 99.1 9.4E-11 2E-15 115.5 6.7 120 93-272 28-154 (194)
23 PRK04286 hypothetical protein; 99.1 9.9E-10 2.1E-14 116.2 12.1 194 1-273 1-210 (298)
24 COG1234 ElaC Metal-dependent h 99.0 4.3E-11 9.2E-16 126.0 0.5 88 1-134 2-100 (292)
25 KOG1361 Predicted hydrolase in 99.0 1.5E-08 3.2E-13 110.5 16.8 277 94-511 112-411 (481)
26 PF07521 RMMBL: RNA-metabolisi 98.9 8.2E-10 1.8E-14 81.5 3.2 40 473-512 3-42 (43)
27 PRK02126 ribonuclease Z; Provi 98.8 3.6E-08 7.8E-13 105.7 13.1 46 91-136 44-94 (334)
28 PRK11921 metallo-beta-lactamas 98.7 6.6E-08 1.4E-12 106.5 12.0 96 90-250 65-164 (394)
29 PRK05452 anaerobic nitric oxid 98.6 1.7E-07 3.8E-12 105.4 10.9 98 90-250 67-168 (479)
30 PRK11709 putative L-ascorbate 98.6 1E-06 2.3E-11 95.0 15.0 99 91-251 106-230 (355)
31 PF00753 Lactamase_B: Metallo- 98.5 1.3E-07 2.7E-12 91.6 6.4 143 12-250 3-147 (194)
32 TIGR02650 RNase_Z_T_toga ribon 98.3 7.2E-06 1.6E-10 84.6 13.6 124 92-272 38-207 (277)
33 PF13483 Lactamase_B_3: Beta-l 98.3 7.5E-06 1.6E-10 78.7 11.3 68 201-272 61-135 (163)
34 COG1237 Metal-dependent hydrol 98.2 3.4E-06 7.3E-11 85.1 7.3 87 1-130 1-96 (259)
35 TIGR03413 GSH_gloB hydroxyacyl 98.2 5.3E-06 1.1E-10 85.6 8.5 82 94-249 43-127 (248)
36 COG0426 FpaA Uncharacterized f 98.0 1.9E-05 4E-10 84.8 8.8 130 13-250 34-167 (388)
37 COG0491 GloB Zn-dependent hydr 98.0 3.5E-05 7.5E-10 78.3 10.0 104 94-249 62-168 (252)
38 PLN02469 hydroxyacylglutathion 97.9 7.7E-05 1.7E-09 77.4 10.7 87 93-249 45-136 (258)
39 KOG2121 Predicted metal-depend 97.9 3.3E-06 7.2E-11 95.3 0.1 53 215-272 594-647 (746)
40 TIGR00361 ComEC_Rec2 DNA inter 97.8 9.2E-05 2E-09 87.0 11.5 135 2-250 441-584 (662)
41 PLN02398 hydroxyacylglutathion 97.7 0.00037 8.1E-09 74.4 11.8 85 93-249 120-207 (329)
42 PRK10241 hydroxyacylglutathion 97.6 0.00016 3.6E-09 74.7 8.5 81 94-249 45-128 (251)
43 PRK11539 ComEC family competen 97.6 0.00029 6.4E-09 84.0 11.4 80 2-125 502-583 (755)
44 COG2220 Predicted Zn-dependent 97.5 0.0016 3.5E-08 67.5 13.4 48 201-250 101-161 (258)
45 COG2248 Predicted hydrolase (m 97.4 0.0026 5.5E-08 63.9 13.4 36 1-36 1-36 (304)
46 PLN02962 hydroxyacylglutathion 97.3 0.0012 2.7E-08 68.0 9.6 43 205-249 104-151 (251)
47 COG1235 PhnP Metal-dependent h 97.2 0.00014 3E-09 76.0 2.1 40 92-133 60-101 (269)
48 COG2333 ComEC Predicted hydrol 97.0 0.0062 1.3E-07 64.0 12.0 98 89-250 85-192 (293)
49 PF07522 DRMBL: DNA repair met 96.3 0.023 4.9E-07 51.0 8.6 84 423-506 10-103 (110)
50 KOG0813 Glyoxylase [General fu 96.0 0.027 5.9E-07 57.9 8.7 44 205-250 96-141 (265)
51 PF02112 PDEase_II: cAMP phosp 96.0 0.05 1.1E-06 58.3 11.0 179 2-250 2-217 (335)
52 PF13691 Lactamase_B_4: tRNase 89.7 0.58 1.3E-05 37.4 4.4 23 14-36 11-34 (63)
53 PF14597 Lactamase_B_5: Metall 88.2 0.24 5.2E-06 47.8 1.4 86 91-249 52-137 (199)
54 KOG3592 Microtubule-associated 82.3 0.84 1.8E-05 52.4 2.3 62 3-114 40-103 (934)
55 KOG1137 mRNA cleavage and poly 81.0 3.5 7.6E-05 46.2 6.5 101 1-139 151-259 (668)
56 COG5212 PDE1 Low-affinity cAMP 72.7 13 0.00029 38.4 7.4 109 92-250 110-233 (356)
57 KOG3798 Predicted Zn-dependent 55.6 40 0.00086 34.6 7.0 48 202-250 180-240 (343)
58 PF11718 CPSF73-100_C: Pre-mRN 53.6 49 0.0011 33.4 7.6 54 567-621 2-62 (216)
59 PRK00685 metal-dependent hydro 45.3 29 0.00063 34.7 4.5 51 486-536 169-228 (228)
60 KOG1015 Transcription regulato 44.1 43 0.00094 40.5 6.0 67 318-385 680-753 (1567)
61 PRK03094 hypothetical protein; 41.4 69 0.0015 27.0 5.2 70 604-673 8-77 (80)
62 PF12706 Lactamase_B_2: Beta-l 39.2 26 0.00057 33.7 3.0 68 423-509 126-193 (194)
63 PRK00055 ribonuclease Z; Revie 30.1 72 0.0016 32.6 4.7 99 424-539 164-269 (270)
64 KOG4736 Uncharacterized conser 29.7 2.1E+02 0.0046 30.2 7.7 44 209-254 171-216 (302)
65 PRK11188 rrmJ 23S rRNA methylt 27.5 54 0.0012 32.7 3.1 39 317-355 146-184 (209)
66 PF04413 Glycos_transf_N: 3-De 25.8 96 0.0021 30.4 4.4 79 427-511 22-105 (186)
67 COG2927 HolC DNA polymerase II 25.1 1.3E+02 0.0028 28.3 4.8 36 317-352 17-52 (144)
68 PF03698 UPF0180: Uncharacteri 24.7 2E+02 0.0043 24.3 5.4 35 604-638 8-42 (80)
69 KOG0390 DNA repair protein, SN 21.0 2.3E+02 0.005 34.1 6.9 73 311-385 243-323 (776)
70 KOG0814 Glyoxylase [General fu 20.2 2E+02 0.0044 28.0 5.1 42 205-250 100-142 (237)
71 PF13483 Lactamase_B_3: Beta-l 20.0 1.1E+02 0.0023 28.8 3.4 26 2-34 1-26 (163)
No 1
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=2.5e-110 Score=870.78 Aligned_cols=624 Identities=31% Similarity=0.518 Sum_probs=559.5
Q ss_pred CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccc---cccC-cccccccccCCCCccc--cc
Q 005761 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAI---CKEN-SDSQNRQKVEKPLDAN--DL 74 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~--~~ 74 (678)
|++|++... .+-+|.++++...|||+|||++++++++|+|.|...++++ |++. .++.+...+.++++|+ .+
T Consensus 1 M~~t~~sv~---~t~pc~llk~~~~rIllDcpld~t~~~nFlPlp~~qSpr~~n~p~~~~~~d~~kfq~~elke~~~rvf 77 (653)
T KOG1138|consen 1 MEGTIGSVS---STYPCKLLKLQRRRILLDCPLDLTAILNFLPLPGVQSPRYSNLPSLDAQNDIQKFQDLELKECCGRVF 77 (653)
T ss_pred CceEEEeec---cCCCchheeccceeEEecCCcchhhhhccccCccccCcccccCccccccCccchhhhHHHHHhCCceE
Confidence 888888754 3789999999999999999999999999999997777754 4443 3344444455555544 57
Q ss_pred cccCCcccccccccCCCCCCccEEEecCCCCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCC
Q 005761 75 IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE 154 (678)
Q Consensus 75 ~~~~p~~~~~~~~~~~d~~~ID~IlISH~dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~ 154 (678)
.++.|++..|. .+.+|+++||+|||||+.++.||||+|+++||.|+|||||||+|+||+||||++.+.++ .|+.
T Consensus 78 vesppe~~l~~-t~lld~stiDvILISNy~~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier-----~p~~ 151 (653)
T KOG1138|consen 78 VESPPEFTLPA-THLLDASTIDVILISNYMGMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIER-----FPKA 151 (653)
T ss_pred EcCCchhccch-hhhhcccceeEEEEcchhhhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHh-----cccc
Confidence 78888887775 58899999999999999999999999999999999999999999999999999999875 4899
Q ss_pred CCCcccchhhhhhhchhhhhhhcccCCCCCCCCCCchH--HHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEE
Q 005761 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN 232 (678)
Q Consensus 155 ~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~ 232 (678)
++++.|++..+.+.+|+++++. ....+|+++| +||+.|++|++.++|+|++++.|.+.+||.+|||.+|||+
T Consensus 152 ~S~~~Wk~k~~~~~lpsplk~~------~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsn 225 (653)
T KOG1138|consen 152 SSAPLWKKKLDSELLPSPLKKA------VFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSN 225 (653)
T ss_pred ccchhhhhhhhhhhcCCCchhh------ccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccc
Confidence 9999999998888899988764 2367899999 9999999999999999999999999999999999999999
Q ss_pred EEEeeCCeeEEEecCCCCCcCCCCcccccccCCCCeEeecCCCCCCCCCCcccCcccCCCcchhhhhccCCCCcccHHHH
Q 005761 233 WIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEM 312 (678)
Q Consensus 233 ~~I~~~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~~~~~~p~~~Dv~EsTyg~~~~~~~~~~~~~h~~~~~~~e~ 312 (678)
|.|+.+++++.|+||+++.++|+++||++.|+.+|+||.++|+++| +.+++
T Consensus 226 W~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~lsql~-----------tanpd------------------ 276 (653)
T KOG1138|consen 226 WLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTGLSQLP-----------TANPD------------------ 276 (653)
T ss_pred eEEecCCcceEEEecCcccccCCccccccccccccEEEEecccccc-----------cCCcc------------------
Confidence 9999999999999999999999999999999999999999998887 12222
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEChhHHHHHHHHHhcHHHHhHHHHHHH
Q 005761 313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391 (678)
Q Consensus 313 e~l~~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~ 391 (678)
++..+||..|..|+++||+||+||+++|.++||+++|.+..++.++ ++|||++||+|+.++++.++++|||+.++|+++
T Consensus 277 ~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkv 356 (653)
T KOG1138|consen 277 EMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKV 356 (653)
T ss_pred chhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcceEecccchhhhhHHHHHHHHHHhhhccce
Confidence 2567899999999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred hCCCCCCCceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEc-cCcchhcccC
Q 005761 392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLE-NEVDAELAVL 470 (678)
Q Consensus 392 ~~~~~pF~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt-~gy~~~~tl~ 470 (678)
|.|+.||+|..+++++|+++|.++.+. +.+.++.|||||++|++|++|+++|+++-|+.+|+|++|+| +++.+...++
T Consensus 357 ylpe~p~~hs~lI~~~rlkiy~sl~g~-fSndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~~~~vl~ 435 (653)
T KOG1138|consen 357 YLPEAPFPHSTLITINRLKIYLSLLGL-FSNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFSYLLVLA 435 (653)
T ss_pred eccCCCCCCceEEeecceeehHHHHHH-HhhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCchhhhhc
Confidence 999999999999999999999999985 88999999999999999999999999999999999999985 5699999999
Q ss_pred CCCceeeEEEEeecccCCCHhhHHHHHHhhCCCEEEEecCCccccccccc------CCceEeecCCCcEEEeCCCCceee
Q 005761 471 PFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV------TSFSVSHYSENETIHIPSLKESAE 544 (678)
Q Consensus 471 ~~~~v~~~v~~~~fs~had~~~l~~li~~~~P~~vilvHg~~~~~~~l~~------~~~~v~~p~~ge~v~i~~~~~~~~ 544 (678)
||+|+.||+.+|||+.+.|++++.++++.+||+.|+++..+.+++..... .-+++.+...+|.+++|.+++.++
T Consensus 436 PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vlcpeaytqp~~~ap~~~i~~~d~~pi~t~~c~ei~~lp~Krkl~~ 515 (653)
T KOG1138|consen 436 PFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVLCPEAYTQPIPLAPIKTISILDYFPIKTLHCPEIVDLPNKRKLVS 515 (653)
T ss_pred CCccccceeEeccccccccHHHHHHHHHHhCCCEEEChhhhcCCCCccchheehhccccccceeehhHHhcCccccceeE
Confidence 99999999999999999999999999999999999999999988766642 235677888999999999999999
Q ss_pred EEecHHHHhhhhhhhhhcCC-cceeEEEEEEEEeCCeeeeecCCCCCC----CCCCC------CceEecCCChHHHHHHH
Q 005761 545 LEIAADIASKFQWRMLKQKK-LNITRLKGRLFVNHGKHQLLPENEPGG----SSQTR------PFLHWGSPDPENLLAEL 613 (678)
Q Consensus 545 v~l~~~l~~~l~~~~~~~~~-~~~a~v~g~l~~~d~~~~l~~~~~~~~----~~~~~------~~~~~g~~~~~~~~~~L 613 (678)
|.+++|+|++|.|++++ ++ +.+|+++|+|.++|++|.|+|...... ++... .++..|++.++++++.|
T Consensus 516 veItpela~kLs~ke~~-~~~~~iAtl~~~L~~~d~kh~Lvp~~~~~k~ek~s~~~~p~lk~lk~~~a~ei~vda~~k~~ 594 (653)
T KOG1138|consen 516 VEITPELASKLSPKELR-QGEFGIATLKGVLLMKDGKHRLVPAKVSLKQEKSSSKARPVLKVLKNSVAGEILVDALLKML 594 (653)
T ss_pred EEEcHHHHhhCChhhcc-CceeEEEEEEEEEEEecCceeeeecccchhhhhcccccchHHhhhhhccCcccchHHHHHHH
Confidence 99999999999999997 55 999999999999999999999655422 11111 24788999999999999
Q ss_pred HHCCCceeEeeccccCcCCCceEEEEeCCCCcEEEEecceeEEEcC-CHHHHHHHHHHHHHhhc
Q 005761 614 SKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAA-DKNLASRIVKAMENILE 676 (678)
Q Consensus 614 ~~~g~~~~~~~~~~~~~~~~~~~i~i~~~~~~~I~~~~~~t~I~~~-~~~~r~~l~d~~~~~l~ 676 (678)
.|.||....... +..+.+|...+ ++++|+++++.|||+|+ +..+|..++|+...+++
T Consensus 595 ik~~~s~itvdn-----~g~g~~i~~~e-~enlikf~Em~t~Ii~~dd~~v~~~~~di~~~llq 652 (653)
T KOG1138|consen 595 IKGGFSQITVDN-----TGEGKSIILIE-NENLIKFEEMGTHIICGDDNVVRQVLRDIDGKLLQ 652 (653)
T ss_pred hhcchhheeeec-----CCCceEEEecc-CchhhhhhhccceEEECCCchhhhhhHhhhhhhcc
Confidence 999999887642 34567777766 67799999999999999 99999999999998875
No 2
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=2.8e-89 Score=683.02 Aligned_cols=437 Identities=21% Similarity=0.328 Sum_probs=370.6
Q ss_pred CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCC-ccccccccCC
Q 005761 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPL-DANDLIFAEP 79 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p 79 (678)
|++++||+| ++||+||+|+.++|.+||+|||+++.. . |.+++ |++.+..+-+
T Consensus 4 i~v~pLGAG-QdvGrSCilvsi~Gk~iM~DCGMHMG~-----------n---------------D~rRfPdFSyI~~~g~ 56 (501)
T KOG1136|consen 4 IKVTPLGAG-QDVGRSCILVSIGGKNIMFDCGMHMGF-----------N---------------DDRRFPDFSYISKSGR 56 (501)
T ss_pred ceEEeccCC-cccCceEEEEEECCcEEEEeccccccc-----------C---------------ccccCCCceeecCCCC
Confidence 689999998 999999999999999999999999762 2 44444 6766543333
Q ss_pred cccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCC
Q 005761 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSG 157 (678)
Q Consensus 80 ~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~ 157 (678)
+ .+.||+|+|||+ ||||||||+++..||.||||||.||+++++.||||+.++.-
T Consensus 57 ~-----------~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~v------------- 112 (501)
T KOG1136|consen 57 F-----------TDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAV------------- 112 (501)
T ss_pred c-----------ccceeEEEEeeecccccccccchHhhhCCCCceEEecchhhhchHHHHHHHHHhc-------------
Confidence 3 367999999999 99999999999999999999999999999999999876642
Q ss_pred cccchhhhhhhchhhhhhhcccCCCCCCCCCCchH--HHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEEEEE
Q 005761 158 PQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWII 235 (678)
Q Consensus 158 ~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~~~I 235 (678)
+++|+ ..+| +||.+||+++.++..+|++.++.++.|+||.|||+||++||.|
T Consensus 113 ---------------------d~kGe-----~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~i 166 (501)
T KOG1136|consen 113 ---------------------DRKGE-----SNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYI 166 (501)
T ss_pred ---------------------cccCc-----ccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEE
Confidence 22342 2455 9999999999999999999999899999999999999999999
Q ss_pred eeCCeeEEEecCCCC--CcCCCCcccccccCCCCeEeecCCCCCCCCCCcccCcccCCCcchhhhhccCCCCcccHHHHH
Q 005761 236 SGAKGNIAYISGSNF--ASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEME 313 (678)
Q Consensus 236 ~~~~~~I~Y~sgD~~--~~~h~~~~d~~~l~~~d~li~~~~~~~p~~~Dv~EsTyg~~~~~~~~~~~~~h~~~~~~~e~e 313 (678)
..+..+|+| |||.. ..+|..+.-....| .|+|| .||||++. .|++++.+|
T Consensus 167 kvGd~svvY-TGDYnmTpDrHLGaA~id~~r-pdlLI-------------sESTYatt-------------iRdskr~rE 218 (501)
T KOG1136|consen 167 KVGDQSVVY-TGDYNMTPDRHLGAAWIDKCR-PDLLI-------------SESTYATT-------------IRDSKRCRE 218 (501)
T ss_pred EecceeEEE-ecCccCCcccccchhhhcccc-CceEE-------------eeccceee-------------eccccchhH
Confidence 999999999 99984 34665433322222 24443 68999883 455554444
Q ss_pred HHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCCceeEEEEChhHHHHHHHHHhcHHHHhHHHHHHHhC
Q 005761 314 KLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFS 393 (678)
Q Consensus 314 ~l~~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~ 393 (678)
| +|+..|++++.+||+||||+||+||+|||+.+|+.||++.+|++|||+.+++++++..||+.+..|.+++.++++.
T Consensus 219 R--dFLk~VhecVa~GGkvlIPvFALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~- 295 (501)
T KOG1136|consen 219 R--DFLKKVHECVARGGKVLIPVFALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFV- 295 (501)
T ss_pred H--HHHHHHHHHHhcCCeEEEEeeecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhc-
Confidence 3 3889999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCCCC--CceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEccCcchhcccC-
Q 005761 394 GDPLF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVL- 470 (678)
Q Consensus 394 ~~~pF--~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt~gy~~~~tl~- 470 (678)
..|+| +|++-+.. .....++|+|+|||||||.+|.|.+.|++||+||.|.||+ |||++.+|.+
T Consensus 296 ~rNmfdfkhiKpfd~-------------~~~~~pGp~VlFatPGMLhaG~SLkvFK~W~~~~~Nlvim-PGYcV~GTvG~ 361 (501)
T KOG1136|consen 296 ERNMFDFKHIKPFDR-------------SYIEAPGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIM-PGYCVAGTVGH 361 (501)
T ss_pred cCCccccccCChhhh-------------hhhcCCCCEEEEcCCcccccccchHHHHhhCCCccceEee-cCceeccchhh
Confidence 34555 44433221 2346799999999999999999999999999999999999 9999998874
Q ss_pred -------------CCCceeeEEEEeecccCCCHhhHHHHHHhhCCCEEEEecCCccccccccc-----CCceEeecCCCc
Q 005761 471 -------------PFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV-----TSFSVSHYSENE 532 (678)
Q Consensus 471 -------------~~~~v~~~v~~~~fs~had~~~l~~li~~~~P~~vilvHg~~~~~~~l~~-----~~~~v~~p~~ge 532 (678)
....++|+|+++.||+|+|..+++++++++.|++|+||||++..|..|++ -+++++.|+|||
T Consensus 362 kvl~G~~kvei~~~~~eirl~V~~maFSaHaDAkGIm~li~~csPknVmlVHGE~~kM~~Lk~ki~~e~~ip~~mPaNGe 441 (501)
T KOG1136|consen 362 KVLNGATKVEIYGTKVEIRLKVEYMAFSAHADAKGIMQLIKQCSPKNVMLVHGEKSKMKFLKEKIESEFDIPTFMPANGE 441 (501)
T ss_pred hhhCCccEEEEeeeEEEEEEEEEEeeeccccCchhHHHHHHhcCcceEEEEeccchhhHHHHHhhHhhcCCceeeCCCCC
Confidence 23478999999999999999999999999999999999999999999973 488999999999
Q ss_pred EEEeCCCCceeeEEecHHHHhhhhhhhh
Q 005761 533 TIHIPSLKESAELEIAADIASKFQWRML 560 (678)
Q Consensus 533 ~v~i~~~~~~~~v~l~~~l~~~l~~~~~ 560 (678)
++.|++... ++++++.+...++..-.+
T Consensus 442 tv~i~s~~~-i~~ri~~~~~~~~~k~~~ 468 (501)
T KOG1136|consen 442 TVVISSTTY-IKARIPDEFLVSLSKPNL 468 (501)
T ss_pred EEEecccce-eeecCcHHHHHHhcCccc
Confidence 999998765 788999988777654333
No 3
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=8.6e-85 Score=686.99 Aligned_cols=450 Identities=20% Similarity=0.300 Sum_probs=386.7
Q ss_pred EEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCcc
Q 005761 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (678)
Q Consensus 2 kl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 81 (678)
++++||+| +|||+||++|+++|.+||||||.+ |...|.. ++|++
T Consensus 15 ~~~pLGag-~EVGRSC~ile~kGk~iMld~gvh--------paysg~a---------------------------slpf~ 58 (668)
T KOG1137|consen 15 KFTPLGAG-NEVGRSCHILEYKGKTIMLDCGVH--------PAYSGMA---------------------------SLPFY 58 (668)
T ss_pred EEEECCCC-cccCceEEEEEecCeEEEeccccC--------ccccccc---------------------------cccch
Confidence 68999998 999999999999999999999999 4445543 68887
Q ss_pred cccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcc
Q 005761 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (678)
Q Consensus 82 ~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~ 159 (678)
+.+|.+.||..||||| ||+++|||+++++.|+|++|||+||++++++++.|++++...
T Consensus 59 ------d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~-------------- 118 (668)
T KOG1137|consen 59 ------DEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNR-------------- 118 (668)
T ss_pred ------hhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecchHHHHHhhhhcceEeeec--------------
Confidence 6789999999999999 999999999999999999999999999999999999876431
Q ss_pred cchhhhhhhchhhhhhhcccCCCCCCCCCCchH--HHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEEEEEee
Q 005761 160 WMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (678)
Q Consensus 160 w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~~~I~~ 237 (678)
+.+ ..+| .|+.++|+|+++++|+|+++++ +++++||.|||++|+|||.+++
T Consensus 119 ----------------------s~~----~~Ly~e~dl~~s~dKie~idfhe~~ev~-gIkf~p~~aGhVlgacMf~vei 171 (668)
T KOG1137|consen 119 ----------------------SGD----DRLYTEGDLMESMDKIETIDFHETVEVN-GIKFWPYHAGHVLGACMFMVEI 171 (668)
T ss_pred ----------------------cCc----cccccchhHHHhhhhheeeeeccccccC-CeEEEeeccchhhhheeeeeee
Confidence 110 2678 9999999999999999999996 7999999999999999999999
Q ss_pred CCeeEEEecCCCCCcCCCCcccccccCCCCeEeecCCCCCCCCCCc--ccCcccCCCcchhhhhccCCCCcccHHHHHHH
Q 005761 238 AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDI--DQSSFSDDNNNWEELMNSLSNYDESVEEMEKL 315 (678)
Q Consensus 238 ~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~~~~~~p~~~Dv--~EsTyg~~~~~~~~~~~~~h~~~~~~~e~e~l 315 (678)
++-+|+| |||++. ..| +||..+ +.+|..+|+ .|||||+ ..|.+|.+ |.
T Consensus 172 agv~lLy-TGd~sr-----eeD-rhl~aa--------e~P~~~~dvli~estygv----------~~h~~r~~-----re 221 (668)
T KOG1137|consen 172 AGVRLLY-TGDYSR-----EED-RHLIAA--------EMPPTGPDVLITESTYGV----------QIHEPREE-----RE 221 (668)
T ss_pred ceEEEEe-ccccch-----hhc-ccccch--------hCCCCCccEEEEEeeeeE----------EecCchHH-----hh
Confidence 9999999 999952 222 224433 223345666 8999999 66776643 44
Q ss_pred HHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCC-C-ceeEEEEChhHHHHHHHHHhcHHHHhHHHHHHHhC
Q 005761 316 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS-L-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFS 393 (678)
Q Consensus 316 ~~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~~-l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~ 393 (678)
++|+..|+.++.+||+||||+||+||+|||+.+|++||.++. + ++|||+.|++|++|+..|++|+.-||+.+++.+..
T Consensus 222 ~rlt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~ 301 (668)
T KOG1137|consen 222 GRLTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSAL 301 (668)
T ss_pred hhhhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhcc
Confidence 779999999999999999999999999999999999999985 5 89999999999999999999999999999987643
Q ss_pred CCCCC--CceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEccCcchhcccC-
Q 005761 394 GDPLF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVL- 470 (678)
Q Consensus 394 ~~~pF--~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt~gy~~~~tl~- 470 (678)
.||| +|+..+++ ++. ..+.+|||+.|+||||+.|.|+++|++||+|++|++|+ +||+.++|++
T Consensus 302 -~Npfifk~vs~L~~--------~D~----f~D~gP~vv~aspgmlqsglSRelfe~wcsD~kN~vli-pGy~Vegtlak 367 (668)
T KOG1137|consen 302 -RNPFIFKHVSILRT--------GDW----FDDEGPSVVMASPGMLQSGLSRELFERWCSDSKNAVLI-PGYCVEGTLAK 367 (668)
T ss_pred -CCceEeeccccccc--------ccc----ccccCCceeEeCchHhhhhhhHHHHHHhCCCCCCcEEe-ccceechhHHH
Confidence 7886 78887776 433 25689999999999999999999999999999999999 9999999874
Q ss_pred --------------CCCceeeEEEEeecccCCCHhhHHHHHHhhCCCEEEEecCCccccccccc----------CCceEe
Q 005761 471 --------------PFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV----------TSFSVS 526 (678)
Q Consensus 471 --------------~~~~v~~~v~~~~fs~had~~~l~~li~~~~P~~vilvHg~~~~~~~l~~----------~~~~v~ 526 (678)
+..|++|+|.+++|+||.|+.|..++|+.++|+++|||||+.+.|.+|+. ..+.++
T Consensus 368 ~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi~~i~~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~ 447 (668)
T KOG1137|consen 368 DILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNSEFIADITPPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVS 447 (668)
T ss_pred HHhcCchhhhcccCCcccccceEEEEEeeechhhhhhHHHHHHhCCCeEEEEecccchhHHHHHHHHHHhccCCCcceec
Confidence 45689999999999999999999999999999999999999999999961 257899
Q ss_pred ecCCCcEEEeCCCCceeeEEecHHHHhhhhhhhhhcCCcceeEEEEEEEEeCCeeeeecCCCC
Q 005761 527 HYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPENEP 589 (678)
Q Consensus 527 ~p~~ge~v~i~~~~~~~~v~l~~~l~~~l~~~~~~~~~~~~a~v~g~l~~~d~~~~l~~~~~~ 589 (678)
+|+|+|.+++.+.++.. ++....+|. . +. ..+++|.|+.++..|.+.++.+-
T Consensus 448 tprn~e~v~l~f~~ekl-ak~~G~~a~------~--p~--~~~~sgiLv~~~~~~~ils~edL 499 (668)
T KOG1137|consen 448 TPRNCEDVELYFPGEKL-AKTTGSLAE------V--PK--EDRVSGILVSYGFSYAILSPEDL 499 (668)
T ss_pred CCccceEeeeecCcchh-hhhhhcccc------C--Cc--cceEEEEEEecCCceeeccHHHh
Confidence 99999999999988721 222222222 1 11 16999999999999999877664
No 4
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=5.8e-79 Score=657.76 Aligned_cols=535 Identities=21% Similarity=0.330 Sum_probs=436.6
Q ss_pred EEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCcc
Q 005761 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (678)
Q Consensus 2 kl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 81 (678)
+++.+.+. .+-+..||+|+++|.+||+||||+...-+++ + .++.
T Consensus 3 ~l~~~~g~-~de~~~cyllqiD~~~iLiDcGwd~~f~~~~--------------------------------i---~~l~ 46 (764)
T KOG1135|consen 3 KLTTLCGA-TDEGPLCYLLQIDGVRILIDCGWDESFDMSM--------------------------------I---KELK 46 (764)
T ss_pred eEEeeccc-cCCCcceEEEEEcCeEEEEeCCCcchhccch--------------------------------h---hhhh
Confidence 34445444 4669999999999999999999996532111 1 1121
Q ss_pred cccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcc
Q 005761 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (678)
Q Consensus 82 ~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~ 159 (678)
-...+|||||+||+ -|+|||||.+.++|+++|||||.|+..||++.|.|+++.+.
T Consensus 47 --------~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~~~S~~--------------- 103 (764)
T KOG1135|consen 47 --------PVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDLYRSHG--------------- 103 (764)
T ss_pred --------cccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhhHHHHHhccc---------------
Confidence 13679999999999 49999999999999999999999999999999999875432
Q ss_pred cchhhhhhhchhhhhhhcccCCCCCCCCCCchH--HHHHHHHhcceEecCCCeEEeCC---CeEEEEEecCCCcccEEEE
Q 005761 160 WMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNG---ILIIKAFSSGLDIGACNWI 234 (678)
Q Consensus 160 w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~y~e~v~i~g---~l~it~~~sGH~lGs~~~~ 234 (678)
+ .. .+.+| +||+.||++|++++|+|++.+.| +++|+||+|||++|++.|.
T Consensus 104 ----------------------~--~~-df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWk 158 (764)
T KOG1135|consen 104 ----------------------N--VG-DFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWK 158 (764)
T ss_pred ----------------------c--cc-cccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEE
Confidence 0 11 14566 99999999999999999999985 5999999999999999999
Q ss_pred EeeCCeeEEEecCCCCCcCCCCcccc---cccCCCCeEeecCCCCCCCCCCcccCcccCCCcchhhhhccCCCCcccHHH
Q 005761 235 ISGAKGNIAYISGSNFASGHAMDFDY---RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEE 311 (678)
Q Consensus 235 I~~~~~~I~Y~sgD~~~~~h~~~~d~---~~l~~~d~li~~~~~~~p~~~Dv~EsTyg~~~~~~~~~~~~~h~~~~~~~e 311 (678)
|...+++|+| +.+||| +||+|+. |+.+. .+|+.++++++. .+.. .++
T Consensus 159 I~k~~E~ivY----------avd~NHkKe~HLNG~~------l~~l~-----RPsllITda~~~-----~~~~----~~r 208 (764)
T KOG1135|consen 159 ISKVGEDIVY----------AVDFNHKKERHLNGCS------LSGLN-----RPSLLITDANHA-----LYSQ----PRR 208 (764)
T ss_pred EEecCceEEE----------EEecccchhcccCCcc------ccccC-----CcceEEeccccc-----cccc----cch
Confidence 9988899999 345555 2455542 12232 345555555443 1111 133
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhC--CC-ceeEEEEChhHHHHHHHHHhcHHHHhHHHH
Q 005761 312 MEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECS--SL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQ 388 (678)
Q Consensus 312 ~e~l~~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~--~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~ 388 (678)
+.|.++|.+.|.++|+.||+|||||+..||++||+.+|+++|.+. ++ .+||++.|+++.++++|++.+.|||++++.
T Consensus 209 kkRDe~f~d~v~~~L~~~G~VlipVDtAgRvLELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~ 288 (764)
T KOG1135|consen 209 KKRDEQFLDTVLKTLRSGGNVLIPVDTAGRVLELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLS 288 (764)
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEEecccHHHHHHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHH
Confidence 456788999999999999999999999999999999999999988 67 699999999999999999999999999998
Q ss_pred HHHhC-CCCCC--CceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEcc-C--
Q 005761 389 EKLFS-GDPLF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLEN-E-- 462 (678)
Q Consensus 389 ~~~~~-~~~pF--~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt~-g-- 462 (678)
+.+.. ..||| +|+.++++ .. +..+...+|+||+||.+.|+.|+|+.+|-+|++||+|.|+||. |
T Consensus 289 k~fe~~r~NpFefrhi~l~~~--------~~--dlsr~p~gpkVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~ 358 (764)
T KOG1135|consen 289 KMFEEARNNPFEFRHITLCHS--------LQ--DLSRVPPGPKVVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSP 358 (764)
T ss_pred HhhhhccCCcceeeeeeeecC--------HH--HHhcCCCCCeEEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCc
Confidence 87765 67898 88888876 21 3445667799999999999999999999999999999999952 0
Q ss_pred ----------------------------------cchhc-----------------------------------------
Q 005761 463 ----------------------------------VDAEL----------------------------------------- 467 (678)
Q Consensus 463 ----------------------------------y~~~~----------------------------------------- 467 (678)
|...+
T Consensus 359 ~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~~e~~r~e~~~~~~~~~~~~~~~~~~Sd~~dd~d~~~~~~~~Hd 438 (764)
T KOG1135|consen 359 GTLARELISMPERAKRIELKVRKRVKLEGEELLEYLEGERLRNEDALRLNVNRDVEIDSSHESDDSDDEDMENDTEVRHD 438 (764)
T ss_pred hhHHHHHhhcccccceeeeeeecccCCchHHHHHHHhhhhhhhhhhHHhhccCCccccccccCCcccccccccccccchh
Confidence 10000
Q ss_pred ---------------------ccCC-------------------------------------------------------
Q 005761 468 ---------------------AVLP------------------------------------------------------- 471 (678)
Q Consensus 468 ---------------------tl~~------------------------------------------------------- 471 (678)
.+.|
T Consensus 439 ~~~~~~~~~~~~f~~~~~~~~~MFPy~e~r~k~DdYGEiI~~~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~ 518 (764)
T KOG1135|consen 439 IMSKAGKSTKDGFFKSAKSKHPMFPYIEERRKWDDYGEIIKPDDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIED 518 (764)
T ss_pred hhhccCCcccccccccccccCcccCCcHHhccccccccccCHHHcccccccchhhhhhccCCcccccccccccccCchhh
Confidence 0000
Q ss_pred -------------CCceeeEEEEeecccCCCHhhHHHHHHhhCCCEEEEecCCccccccccc-------CCceEeecCCC
Q 005761 472 -------------FKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV-------TSFSVSHYSEN 531 (678)
Q Consensus 472 -------------~~~v~~~v~~~~fs~had~~~l~~li~~~~P~~vilvHg~~~~~~~l~~-------~~~~v~~p~~g 531 (678)
-..++|+|.++++.+..|.+.+.++|.+++|+++|||||..+..+.++. ....|++|+.|
T Consensus 519 ~~~~ptk~is~~~~i~vs~~v~~iDyeGisDgrSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~~~~~~vyaP~~~ 598 (764)
T KOG1135|consen 519 LSEVPTKCISGEKGIEVSCRVEKIDYEGISDGRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCASLGCFTIDVYAPKSG 598 (764)
T ss_pred hhcccceeeccccceEEEEEEEEeeeeccccchhHHHHHhccCccEEEEecCCchhhHHHHHHHHhcCCCcceeeccccc
Confidence 0158999999999999999999999999999999999999988888752 23689999999
Q ss_pred cEEEeCCCCceeeEEecHHHHhhhhhhhhhcCCcceeEEEEEEEEe----CC----------------------------
Q 005761 532 ETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVN----HG---------------------------- 579 (678)
Q Consensus 532 e~v~i~~~~~~~~v~l~~~l~~~l~~~~~~~~~~~~a~v~g~l~~~----d~---------------------------- 579 (678)
|+|+++.+.+.++|++++.|.++|+|++++ ..++||+.|++.++ ++
T Consensus 599 e~idvtsd~~~y~V~L~d~l~~~l~f~k~~--~~evawid~~l~~~~~~~d~~~~~e~dv~~~~~~s~~~~~~e~et~~~ 676 (764)
T KOG1135|consen 599 EIIDVTSDVHIYQVKLSDGLLSNLQFKKVG--DAEVAWIDGVLDMRKKAIDGDKTVEMDVVRLVKESVPEVNNEKETGSR 676 (764)
T ss_pred ceEEeeehheeeeeEechhhhhhheeeecc--cceeeeeehhhccccccccccccccceecchhhccccccccccccccc
Confidence 999999999999999999999999999995 47899999999322 11
Q ss_pred -eeeeecCCCCCCCCCCCCceEecCCChHHHHHHHHHCCCceeEeeccccCcCCCceEEEEeCCCCcEEEEecceeEEEc
Q 005761 580 -KHQLLPENEPGGSSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISA 658 (678)
Q Consensus 580 -~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~i~i~~~~~~~I~~~~~~t~I~~ 658 (678)
+.+|.|.+. ...+.|+.+++|.+++.+|+|.|..+|+++||.++.+ .+++.-|+||+...++|.+||+ .|
T Consensus 677 ~~l~l~pl~~--~~~P~h~~v~igd~rLadfKq~L~~kgi~aEf~gggl---L~~~g~VavRk~d~G~i~ieG~----ls 747 (764)
T KOG1135|consen 677 SKLTLLPLPG--AEIPRHQAVLIGDLRLADFKQLLTEKGIQAEFKGGGL---LVCNGCVAVRKVDTGKITIEGC----LS 747 (764)
T ss_pred cccccccCCc--ccCCcccceeecChhHHHHHHHHHhCCeEEEEecCcE---EEECCEEEEEEcCCceEEEecc----ch
Confidence 122333332 2345678899999999999999999999999999877 7788899999999999999999 99
Q ss_pred C-CHHHHHHHHHHH
Q 005761 659 A-DKNLASRIVKAM 671 (678)
Q Consensus 659 ~-~~~~r~~l~d~~ 671 (678)
+ +|++|+++||.+
T Consensus 748 e~fy~iR~lvYdq~ 761 (764)
T KOG1135|consen 748 EDFYKIRDLVYDQL 761 (764)
T ss_pred HHHHHHHHHHHHHh
Confidence 9 999999999975
No 5
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=2e-77 Score=626.70 Aligned_cols=417 Identities=19% Similarity=0.271 Sum_probs=347.5
Q ss_pred CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCc
Q 005761 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 80 (678)
.++|+|||. .|||+||++|+..+.+||||||+.... .+. ++.|+
T Consensus 181 vRvt~LGg~-~EVGRSa~lv~T~eSrVLlDcG~n~a~--------~~~---------------------------~~~Py 224 (637)
T COG1782 181 VRVTALGGF-REVGRSALLVSTPESRVLLDCGVNVAG--------NGE---------------------------DAFPY 224 (637)
T ss_pred EEEEeeccc-hhccceeEEEecCCceEEEeccccCCC--------Ccc---------------------------ccCcc
Confidence 379999999 999999999999999999999999542 111 03456
Q ss_pred ccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCc
Q 005761 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (678)
Q Consensus 81 ~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~ 158 (678)
+..| .+.+.++|||+|||+ ||||-||||++ +||.||||||+||.++.-+|..|++++.+.
T Consensus 225 l~vp----E~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy~GPVY~T~PTRDlm~LLq~Dyi~va~k------------- 286 (637)
T COG1782 225 LDVP----EFQPDELDAVIITHAHLDHCGFLPLLFK-YGYDGPVYCTPPTRDLMVLLQLDYIEVAEK------------- 286 (637)
T ss_pred cccc----cccccccceEEEeecccccccchhhhhh-cCCCCCeeeCCCcHHHHHHHHHHHHHHHHh-------------
Confidence 5433 224458999999999 99999999999 899999999999999999999999988652
Q ss_pred ccchhhhhhhchhhhhhhcccCCCCCCCCCCchH--HHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEEEEEe
Q 005761 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIIS 236 (678)
Q Consensus 159 ~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~~~I~ 236 (678)
.|. .++| .||++++.+.++++|++..++.+++++|+|+|||+|||++..+-
T Consensus 287 ----------------------eg~-----~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlH 339 (637)
T COG1782 287 ----------------------EGG-----EPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLH 339 (637)
T ss_pred ----------------------cCC-----CCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEE
Confidence 121 4788 99999999999999999999999999999999999999998775
Q ss_pred e--CCeeEEEecCCCCCcCCCCcccccccCCCCeEeecCCCCCCCCCC--cccCcccCCCcchhhhhccCCCCcccHHHH
Q 005761 237 G--AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTED--IDQSSFSDDNNNWEELMNSLSNYDESVEEM 312 (678)
Q Consensus 237 ~--~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~~~~~~p~~~D--v~EsTyg~~~~~~~~~~~~~h~~~~~~~e~ 312 (678)
. +...|+| |||+-. -..+.|.+|. +.+| .++ +||||||..+ ..+++|+ +.
T Consensus 340 IGdGlyNi~y-TGDfk~------~~trLl~~A~-------n~Fp-RvEtlimEsTYGg~~--------d~q~~R~---ea 393 (637)
T COG1782 340 IGDGLYNIVY-TGDFKF------EKTRLLEPAN-------NKFP-RVETLIMESTYGGRD--------DVQPPRE---EA 393 (637)
T ss_pred ecCCceeEEE-eccccc------ceeeecChhh-------ccCc-chhheeeeeccCCcc--------ccCccHH---HH
Confidence 4 5679999 999921 1122344443 5566 333 3999999643 2333443 22
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEChhHHHHHHHHHhcHHHHhHHHHHHH
Q 005761 313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391 (678)
Q Consensus 313 e~l~~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~ 391 (678)
| ++|...|.+|+++||+||||+||+||+||++..|+++++++.+ .+|||++ +|..++++++..|+|||+...+..+
T Consensus 394 E--~~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYlD-GMI~EatAIhtaYPEyL~~~lr~~I 470 (637)
T COG1782 394 E--KELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYLD-GMIWEATAIHTAYPEYLNKELRERI 470 (637)
T ss_pred H--HHHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceeee-eeeeehhhhhhcCHHhhhHHHHHHH
Confidence 2 5688999999999999999999999999999999999999888 5999998 8999999999999999999999988
Q ss_pred hC-CCCCCC--ceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEccCcchhcc
Q 005761 392 FS-GDPLFA--HVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA 468 (678)
Q Consensus 392 ~~-~~~pF~--~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt~gy~~~~t 468 (678)
+. ++|||- ..+-+.+ -+..+.....++||||+||||||.+|++++||+.|+.||+|+|+| +|||+++|
T Consensus 471 ~~~g~NPF~se~f~~V~~--------~~~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliF-VgYQAeGT 541 (637)
T COG1782 471 FHEGENPFLSEIFKRVEG--------SDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIF-VGYQAEGT 541 (637)
T ss_pred hcCCCCCccccceeecCC--------hhHHHHHhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEE-EEeccCcc
Confidence 75 899993 3333322 223344567789999999999999999999999999999999999 99999999
Q ss_pred cCCC-------------------CceeeEEEEe-ecccCCCHhhHHHHHHhhCC--CEEEEecCCccccccccc-----C
Q 005761 469 VLPF-------------------KPISMKVLQC-SFLSGKKLQKVQPLLKILQP--KLVLFPEEWRTHVSFSDV-----T 521 (678)
Q Consensus 469 l~~~-------------------~~v~~~v~~~-~fs~had~~~l~~li~~~~P--~~vilvHg~~~~~~~l~~-----~ 521 (678)
|+.. ..++|.|+.+ .||+|+|..||+++++.++| ++|+++||++.++..|+. -
T Consensus 542 LGRriq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHsdrrqL~~yvr~~~PkP~ki~~~HGe~sk~~~lA~si~~~~ 621 (637)
T COG1782 542 LGRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQLMKYVRRMNPKPEKILLNHGEPSKCLDLASSIRRKF 621 (637)
T ss_pred hhhhhhcCceecccccCCCCeEEEEEEEEEEEecCcCCCccHHHHHHHHHhcCCCCceeEeecCChHHHHHHHHHHHhhc
Confidence 9631 3689999999 89999999999999999955 699999999999999973 2
Q ss_pred CceEeecCCCcEEEe
Q 005761 522 SFSVSHYSENETIHI 536 (678)
Q Consensus 522 ~~~v~~p~~ge~v~i 536 (678)
.+..++|.|.|+|.+
T Consensus 622 ~i~t~ap~nLetiR~ 636 (637)
T COG1782 622 KIETYAPKNLETIRL 636 (637)
T ss_pred ceeeeccccccceec
Confidence 567789999999875
No 6
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=5.1e-72 Score=636.64 Aligned_cols=415 Identities=19% Similarity=0.275 Sum_probs=339.7
Q ss_pred CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCc
Q 005761 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 80 (678)
|++++|||+ +++|+|||+|+.++.+||||||++... ... . ..|+
T Consensus 175 m~i~~LGg~-~eVG~Sc~Ll~~~~~~ILIDcG~~~~~--------~~~------------------~---------~~p~ 218 (630)
T TIGR03675 175 VRVTALGGF-REVGRSALLLSTPESRILLDCGVNVGA--------NGD------------------N---------AYPY 218 (630)
T ss_pred EEEEEEecC-CccCCCEEEEEECCCEEEEECCCCccc--------cch------------------h---------hccc
Confidence 799999998 899999999999999999999998431 000 0 1233
Q ss_pred ccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCc
Q 005761 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (678)
Q Consensus 81 ~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~ 158 (678)
+.. ..+++.+||+|||||+ ||+|+||+|++ .||++|||||+||++++++++.|+++++..
T Consensus 219 l~~----~~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~------------- 280 (630)
T TIGR03675 219 LDV----PEFQLDELDAVVITHAHLDHSGLVPLLFK-YGYDGPVYCTPPTRDLMTLLQLDYIDVAQR------------- 280 (630)
T ss_pred ccc----cCCCHHHCcEEEECCCCHHHHhhHHHHHH-hCCCCceeecHHHHHHHHHHHHHHHHHHHh-------------
Confidence 211 1134678999999999 99999999987 689999999999999999999998766431
Q ss_pred ccchhhhhhhchhhhhhhcccCCCCCCCCCCchH--HHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEEEEEe
Q 005761 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIIS 236 (678)
Q Consensus 159 ~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~~~I~ 236 (678)
.+ ..++| +|++.++.++++++|++++++.+++++++++|||++|||+|.++
T Consensus 281 ----------------------~g-----~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~ 333 (630)
T TIGR03675 281 ----------------------EG-----KKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLH 333 (630)
T ss_pred ----------------------cC-----CCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEE
Confidence 01 13677 89999999999999999999987899999999999999999887
Q ss_pred eC--CeeEEEecCCCCC--cCCCCcccccccCCCCeEeecCCCCCCCCCCc--ccCcccCCCcchhhhhccCCCCcccHH
Q 005761 237 GA--KGNIAYISGSNFA--SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDI--DQSSFSDDNNNWEELMNSLSNYDESVE 310 (678)
Q Consensus 237 ~~--~~~I~Y~sgD~~~--~~h~~~~d~~~l~~~d~li~~~~~~~p~~~Dv--~EsTyg~~~~~~~~~~~~~h~~~~~~~ 310 (678)
.+ ..+|+| |||+.. +++ +.++. ..++ .+|+ +|||||+... .|++++
T Consensus 334 i~dg~~~IvY-TGD~~~~~~~l--------l~~a~-------~~~~-~vD~LI~ESTYg~~~~--------~~~~r~--- 385 (630)
T TIGR03675 334 IGDGLYNIVY-TGDFKYEKTRL--------LDPAV-------NKFP-RVETLIMESTYGGRDD--------YQPSRE--- 385 (630)
T ss_pred ECCCCEEEEE-eCCCCCCCCcC--------ccchh-------hcCC-CCCEEEEeCccCCCCC--------CCCCHH---
Confidence 64 479999 999843 122 12111 1122 3454 8999998421 244432
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEChhHHHHHHHHHhcHHHHhHHHHH
Q 005761 311 EMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQE 389 (678)
Q Consensus 311 e~e~l~~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~ 389 (678)
+..++|++.|.+|+++||+||||+|++||+|||+.+|+++|+++.+ ++|||++| |+.+++++|+.++|||++..++
T Consensus 386 --~~e~~l~~~I~~tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~ 462 (630)
T TIGR03675 386 --EAEKELIKVVNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRE 462 (630)
T ss_pred --HHHHHHHHHHHHHHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHH
Confidence 2336789999999999999999999999999999999999998888 79999996 8999999999999999999888
Q ss_pred HHh-CCCCCC--CceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEccCcchh
Q 005761 390 KLF-SGDPLF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAE 466 (678)
Q Consensus 390 ~~~-~~~~pF--~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt~gy~~~ 466 (678)
.++ .+++|| ++++.+++ .++++......+|||||||+|||++|+++++|++|++||+|+|+| +|||++
T Consensus 463 ~i~~~~~npf~~~~~~~v~~--------~~~~~~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~Iif-vGyqa~ 533 (630)
T TIGR03675 463 RIFHEGENPFLSEIFVRVEG--------SDERREIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVF-VGYQAE 533 (630)
T ss_pred HHhhcCCCcccCCceEEeCC--------HHHHHHHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEE-eCCCCC
Confidence 776 478898 45555544 222233445689999999999999999999999999999999999 899999
Q ss_pred cccC------------------CCCceeeEEEEee-cccCCCHhhHHHHHHhhCC--CEEEEecCCccccccccc-----
Q 005761 467 LAVL------------------PFKPISMKVLQCS-FLSGKKLQKVQPLLKILQP--KLVLFPEEWRTHVSFSDV----- 520 (678)
Q Consensus 467 ~tl~------------------~~~~v~~~v~~~~-fs~had~~~l~~li~~~~P--~~vilvHg~~~~~~~l~~----- 520 (678)
+|++ ...+++|+|+.++ ||+|||+.+|++|++.++| ++|+|+||+++++..|++
T Consensus 534 gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~gfSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~ 613 (630)
T TIGR03675 534 GTLGRRIQSGWREIPLTDEGKTETIKINMEVETVEGFSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKK 613 (630)
T ss_pred CchHHHHhcCCcEEEecCCCCceEEEEEEEEEEeCCccccCCHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 9874 1246899999996 9999999999999999965 899999999999999973
Q ss_pred CCceEeecCCCcEEEe
Q 005761 521 TSFSVSHYSENETIHI 536 (678)
Q Consensus 521 ~~~~v~~p~~ge~v~i 536 (678)
.++++++|.+||++++
T Consensus 614 ~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 614 FNIETYAPKNLETIRL 629 (630)
T ss_pred hCCcEEeCCCCCEEEe
Confidence 3789999999999986
No 7
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-60 Score=524.24 Aligned_cols=399 Identities=19% Similarity=0.235 Sum_probs=327.6
Q ss_pred CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCc
Q 005761 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 80 (678)
|++.++|++ +++|++|++|++++.+||+|||+.... .. +..|+
T Consensus 1 ~~~~~~g~~-~evg~s~~~l~~~~~~il~D~G~~~~~--------~~----------------------------~~~p~ 43 (427)
T COG1236 1 MTLRFLGAA-REVGRSCVLLETGGTRILLDCGLFPGD--------PS----------------------------PERPL 43 (427)
T ss_pred Cceeccccc-CCcCcEEEEEEECCceEEEECCCCcCc--------CC----------------------------ccCCC
Confidence 789999998 999999999999999999999999442 00 02344
Q ss_pred ccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCc
Q 005761 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (678)
Q Consensus 81 ~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~ 158 (678)
.. ..+ ++|+|||||+ ||+||||+++.. +|+++||||.||+.+++.++.|+++.+..
T Consensus 44 ~~------~~~--~vDavllTHaHlDH~g~lp~l~~~-~~~~~v~aT~~T~~l~~~~l~d~~~~~~~------------- 101 (427)
T COG1236 44 LP------PFP--KVDAVLLTHAHLDHIGALPYLVRN-GFEGPVYATPPTAALLKVLLGDSLKLAEG------------- 101 (427)
T ss_pred CC------CCC--CcCEEEeccCchhhhcccHHHHHh-ccCCceeeccCHHHHHHHHHHHHHhhhcC-------------
Confidence 31 122 8999999999 999999999984 48999999999999999999999876420
Q ss_pred ccchhhhhhhchhhhhhhcccCCCCCCCCCCchH--HHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEEEEEe
Q 005761 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIIS 236 (678)
Q Consensus 159 ~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~~~I~ 236 (678)
.-.++| +|++.+++++++++|+|++++. +++|++|+|||++|||+|.++
T Consensus 102 ----------------------------~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-~~~v~~~~AGHilGsa~~~le 152 (427)
T COG1236 102 ----------------------------PDKPPYSEEDVERVPDLIRPLPYGEPVEVG-GVKVTFYNAGHILGSAAILLE 152 (427)
T ss_pred ----------------------------CCCCCCchhHHHhhHhhEEEecCCCceEee-eEEEEEecCCCccceeEEEEE
Confidence 013566 9999999999999999999996 599999999999999999999
Q ss_pred eCCeeEEEecCCCCCcCCCCcccccccCCCCeEeecCCCCCCCCCCc--ccCcccCCCcchhhhhccCCCCcccHHHHHH
Q 005761 237 GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDI--DQSSFSDDNNNWEELMNSLSNYDESVEEMEK 314 (678)
Q Consensus 237 ~~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~~~~~~p~~~Dv--~EsTyg~~~~~~~~~~~~~h~~~~~~~e~e~ 314 (678)
.++.+|+| |||.... +..++++++ .++ .+|+ +|||||+ +.|++|+.. +
T Consensus 153 ~~~~~ily-tGD~~~~------~~~l~~~a~--------~~~-~~DvLI~EsTYg~----------~~~~~r~~~---e- 202 (427)
T COG1236 153 VDGGRILY-TGDVKRR------KDRLLNGAE--------LPP-CIDVLIVESTYGD----------RLHPNRDEV---E- 202 (427)
T ss_pred eCCceEEE-EeccCCC------cCCCCCccc--------cCC-CCcEEEEecccCC----------ccCCCHHHH---H-
Confidence 99999999 9999421 112233332 111 2455 8999999 566665443 3
Q ss_pred HHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCCceeEEEEChhHHHHHHHHHhcHHHHhHHHHHHHhCC
Q 005761 315 LAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSG 394 (678)
Q Consensus 315 l~~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~ 394 (678)
+.|.+.|.+++.+||+||||+|++||+||||.+|+.+|.++ ++|||++|++|+.+..+++.+.+|++......+...
T Consensus 203 -~~f~~~v~~~l~~GG~vlipafa~graQEll~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (427)
T COG1236 203 -RRFIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAG--DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR 279 (427)
T ss_pred -HHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh
Confidence 33899999999999999999999999999999999999887 899999999999999999999999999887766432
Q ss_pred CCCCCceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEccCcchhcccC----
Q 005761 395 DPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVL---- 470 (678)
Q Consensus 395 ~~pF~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt~gy~~~~tl~---- 470 (678)
|. .+++ ...+.......+|+||+|++||+.+|+++++++.|+++++|.+++ +|||++++++
T Consensus 280 ---~~---~v~~--------~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~l-~~~~~~~t~gr~~~ 344 (427)
T COG1236 280 ---FR---FVES--------RRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLL-PGYQAEGTLGRVLL 344 (427)
T ss_pred ---cc---cccc--------hhhhhhhhccCCceEEEEecccccCCcHHHHHHHHhcCCcceEEE-cccccCCcchhHHh
Confidence 32 2222 111123456789999999999999999999999999999999999 8999998853
Q ss_pred ----------CCCceeeEEEEeecccCCCHhhHHHHHHhhCCCEEEEecCCcccccccc----c--CCc-eEeecCCCcE
Q 005761 471 ----------PFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----V--TSF-SVSHYSENET 533 (678)
Q Consensus 471 ----------~~~~v~~~v~~~~fs~had~~~l~~li~~~~P~~vilvHg~~~~~~~l~----~--~~~-~v~~p~~ge~ 533 (678)
...+++++|+.+.||+|+|+.++.+||++..|++|+++||+...+..+. + .++ .++.|.+++.
T Consensus 345 ~~~~~~~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~~~~~~~v~~~Hg~~~~~~~~~~~~~~e~~~~~~~~~p~~~~~ 424 (427)
T COG1236 345 EGGTSVHIKGIEIKVKARVEELDFSAHADGDELLEFIKDISPPKVVLVHGEPEYGAALRARLLEELIGIRELELPANGEE 424 (427)
T ss_pred cCCcEEeecceeecccceEEEeccccccCcHHHHHHHhcCCCceEEEEeCCchhhhHHHHHHHHhhCCcceeecCCCccc
Confidence 2346899999999999999999999999999999999999998763332 2 244 5788998887
Q ss_pred EE
Q 005761 534 IH 535 (678)
Q Consensus 534 v~ 535 (678)
+.
T Consensus 425 ~~ 426 (427)
T COG1236 425 YE 426 (427)
T ss_pred cC
Confidence 64
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=100.00 E-value=1.3e-34 Score=320.31 Aligned_cols=381 Identities=13% Similarity=0.131 Sum_probs=255.9
Q ss_pred CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCc
Q 005761 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 80 (678)
+++++|||. +|+|++||+|+.++..||+|||..+... ....++.+ .|.
T Consensus 1 ~~i~~lGG~-~eiG~n~~ll~~~~~~iliD~G~~~~~~----------------------------~~~g~~~~---iPd 48 (422)
T TIGR00649 1 VKIFALGGL-GEIGKNMYVVEIDDDVFIFDAGILFPED----------------------------AMLGVDGV---IPD 48 (422)
T ss_pred CEEEEccCC-CccCCeEEEEEECCeEEEEeCCCCCCcc----------------------------cccCCccc---cCC
Confidence 589999998 8999999999999999999999974310 00000101 121
Q ss_pred ccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCc
Q 005761 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (678)
Q Consensus 81 ~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~ 158 (678)
+.. ......++|+|||||+ ||++|||+|....+ ..|||+|+.|+++.+..+.+ .
T Consensus 49 ~~~----l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~-~~~Vy~~~~t~~~l~~~~~~-----~-------------- 104 (422)
T TIGR00649 49 FSY----LQENQDKVKGIFITHGHEDHIGAVPYLFHTVG-FPPIYGTPLTIALIKSKIKE-----N-------------- 104 (422)
T ss_pred HHH----HHhccccCCEEEECCCChHHhCcHHHHHHhCC-CCeEEeCHHHHHHHHHHHHh-----c--------------
Confidence 100 0012468999999999 99999999987322 36999999998765533220 0
Q ss_pred ccchhhhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCC-cccEEEEEee
Q 005761 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD-IGACNWIISG 237 (678)
Q Consensus 159 ~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~-lGs~~~~I~~ 237 (678)
+ ... . ..++.+++++++++.++++|++++++|. +||+++.++.
T Consensus 105 -----------------------~--~~~--~---------~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~ 148 (422)
T TIGR00649 105 -----------------------K--LNV--R---------TDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHT 148 (422)
T ss_pred -----------------------C--CCC--C---------CceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEe
Confidence 0 000 0 1367889999999954699999999995 6999999999
Q ss_pred CCeeEEEecCCCCCc-CCCC--cccccc-----cCCCCeEeecCCCCCCCCCCcccCcccCCCcchhhhhccCCCCcccH
Q 005761 238 AKGNIAYISGSNFAS-GHAM--DFDYRA-----IQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESV 309 (678)
Q Consensus 238 ~~~~I~Y~sgD~~~~-~h~~--~~d~~~-----l~~~d~li~~~~~~~p~~~Dv~EsTyg~~~~~~~~~~~~~h~~~~~~ 309 (678)
++.+|+| |||+... +... +.|... .+++|+|| +||||+... . ....
T Consensus 149 ~~~~ivy-tGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li-------------~EsT~~~~~-~--------~~~~--- 202 (422)
T TIGR00649 149 PLGYIVY-TGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLI-------------SDSTNVENP-G--------FTPS--- 202 (422)
T ss_pred CCcEEEE-CCCcCCCCCccCCcccCHHHHHhhcccCeEEEE-------------ECCCCCCCC-C--------CCCC---
Confidence 8899999 9999432 1111 122111 12344443 678887521 1 1110
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCeEEEecCC--hHHHHHHHHHHHHHHHhCCCceeEEEEChhHHHHHHHHHhcHHHHhHH
Q 005761 310 EEMEKLAFICSCAIDSV-KAGGSVLIPINR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQ 386 (678)
Q Consensus 310 ~e~e~l~~~~~~I~~tl-~~GG~VLIP~~a--~Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~ 386 (678)
+ ..+.+.+.+++ +.+|+|++++|+ ++|+|+++++..++ +.||++++....++++.+..+ .|++.
T Consensus 203 -e----~~~~~~i~~~~~~~~~~viv~~fa~~~~R~~~i~~~a~~~------~r~v~v~g~~~~~~~~~~~~~-g~~~~- 269 (422)
T TIGR00649 203 -E----AKVLEQLNDIFKNAKGRVIVATFASNIHRVQQLIQIARKQ------GRKFAVYGRSMEHLFGIARRL-GLIKN- 269 (422)
T ss_pred -H----HHHHHHHHHHHHhCCCEEEEEEccccHHHHHHHHHHHHHh------CCEEEEECccHHHHHHHHHHc-CCccC-
Confidence 1 11233455555 568999999999 99999999988665 679999988888888887653 33211
Q ss_pred HHHHHhCCCCCCCceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCC--------CCcEE
Q 005761 387 RQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH--------NSLLV 458 (678)
Q Consensus 387 ~~~~~~~~~~pF~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~--------~N~Ii 458 (678)
+.. ..+.. ....+..++++||++|++ ++|+ ...+.+++.++ .++||
T Consensus 270 -------~~~-----~~~~~-----------~~i~~~~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi 323 (422)
T TIGR00649 270 -------PHN-----NFISL-----------KEVNNSPDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVV 323 (422)
T ss_pred -------Ccc-----ceeCH-----------HHHhcCCcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEE
Confidence 000 01111 111223357999999887 7777 77777888875 36777
Q ss_pred Ec----cCcc-hhcc--cC-CCCceeeEEEE-eecccCCCHhhHHHHHHhhCCCEEEEecCCcccccccc----cCCc--
Q 005761 459 LE----NEVD-AELA--VL-PFKPISMKVLQ-CSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----VTSF-- 523 (678)
Q Consensus 459 lt----~gy~-~~~t--l~-~~~~v~~~v~~-~~fs~had~~~l~~li~~~~P~~vilvHg~~~~~~~l~----~~~~-- 523 (678)
+. +|+. .+.. +. ....+.+++.+ +-+|+||+.+++..+++.++|+.+|.|||+......++ +.|+
T Consensus 324 ~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~~~~~~a~~~g~~~ 403 (422)
T TIGR00649 324 FSAPPIPGNENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLINHTKLAEEEGYPG 403 (422)
T ss_pred EECCCCCcHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHHHHHHHHHHcCCCc
Confidence 62 3543 1111 11 12235566655 78999999999999999999999999999977665443 3466
Q ss_pred -eEeecCCCcEEEeCC
Q 005761 524 -SVSHYSENETIHIPS 538 (678)
Q Consensus 524 -~v~~p~~ge~v~i~~ 538 (678)
+++.|.||+++.+..
T Consensus 404 ~~~~~~~nG~~~~~~~ 419 (422)
T TIGR00649 404 ENIFILRNGDVLEING 419 (422)
T ss_pred ccEEEecCCcEEEecC
Confidence 799999999998853
No 9
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.91 E-value=2.6e-22 Score=223.65 Aligned_cols=384 Identities=15% Similarity=0.167 Sum_probs=233.4
Q ss_pred CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCc
Q 005761 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 80 (678)
|++++|||- +|+|++||++++++.-|++|||+.+..- ...-++.++....|
T Consensus 9 i~i~~lGG~-~EiGkN~~vve~~~~i~i~D~G~~fp~~----------------------------~~~gvDliIPd~~y 59 (555)
T COG0595 9 IKIFALGGV-GEIGKNMYVVEYGDDIIILDAGLKFPED----------------------------DLLGVDLIIPDFSY 59 (555)
T ss_pred eEEEEecCh-hhhccceEEEEECCcEEEEECccccCcc----------------------------ccccccEEecChHH
Confidence 689999998 8999999999999999999999995421 01111111111112
Q ss_pred ccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCc
Q 005761 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (678)
Q Consensus 81 ~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~ 158 (678)
. .-+...|++|||||+ ||+||+|||.....+ .|||+|+.|+++.+.-+++.-..
T Consensus 60 l-------~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~-~piy~s~lt~~Li~~k~~~~~~~---------------- 115 (555)
T COG0595 60 L-------EENKDKVKGIFLTHGHEDHIGALPYLLKQVLF-APIYASPLTAALIKEKLKEHGLF---------------- 115 (555)
T ss_pred h-------hhccccceEEEecCCchhhccchHHHHhcCCc-CceecCHhhHHHHHHHHHHhccc----------------
Confidence 1 113459999999999 999999999984443 99999999999988766532000
Q ss_pred ccchhhhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCc-ccEEEEEee
Q 005761 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDI-GACNWIISG 237 (678)
Q Consensus 159 ~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~l-Gs~~~~I~~ 237 (678)
. . ...++.++.++.+++ |.+.|++++.-|++ +|+++.|++
T Consensus 116 -----------------------~----~-----------~~~~~ev~~~~~i~~-~~~~v~f~~vtHSIPds~g~~i~T 156 (555)
T COG0595 116 -----------------------K----N-----------ENELHEVKPGSEIKF-GSFEVEFFPVTHSIPDSLGIVIKT 156 (555)
T ss_pred -----------------------c----c-----------cCceEEeCCCCeEEe-CcEEEEEEeecccCccceEEEEEC
Confidence 0 0 025889999999999 69999999999986 799999999
Q ss_pred CCeeEEEecCCCCCcCCCC---cccccc----cC-CCCeEeecCCCCCCCCCCcccCcccCCCcchhhhhccCCCCcccH
Q 005761 238 AKGNIAYISGSNFASGHAM---DFDYRA----IQ-GSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESV 309 (678)
Q Consensus 238 ~~~~I~Y~sgD~~~~~h~~---~~d~~~----l~-~~d~li~~~~~~~p~~~Dv~EsTyg~~~~~~~~~~~~~h~~~~~~ 309 (678)
+...|+| |||+-..-.+. +.|... ++ +.++|| +|||-.. ++.+ ++
T Consensus 157 p~G~Iv~-TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~Li-------------sdsTna~-~pg~--------t~---- 209 (555)
T COG0595 157 PEGNIVY-TGDFKFDPTPVDGEPTDLARLAEIGKEGVLALI-------------SDSTNAE-NPGF--------TP---- 209 (555)
T ss_pred CCccEEE-eCCEEecCCcCCCCcCCHHHHHHhccCCcEEEE-------------eCCcccC-CCCC--------CC----
Confidence 9999999 99994322221 133311 11 244444 4455433 1110 01
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCeEEEecCCh--HHHHHHHHHHHHHHHhCCCceeEEEEChhHHHHHHHHHhcHHHHhHH
Q 005761 310 EEMEKLAFICSCAIDSVK-AGGSVLIPINRV--GVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQ 386 (678)
Q Consensus 310 ~e~e~l~~~~~~I~~tl~-~GG~VLIP~~a~--Gr~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~ 386 (678)
.|.+- -..+.+.++ ..|.|++-+|+. +|+|.++.+=.++ +-++.+.+--..+.....+...-|-..
T Consensus 210 SE~~v----~~~l~~i~~~a~grVIv~tfaSni~Ri~~i~~~A~~~------gR~vvv~GrSm~~~~~~a~~lg~~~~~- 278 (555)
T COG0595 210 SESEV----GENLEDIIRNAKGRVIVTTFASNIERIQTIIDAAEKL------GRKVVVTGRSMERLIAIARRLGYLKLP- 278 (555)
T ss_pred CHHHH----HHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHc------CCeEEEEcHhHHHHHHHHhhcccccCc-
Confidence 11111 122333332 388999999885 5888888766443 678888876666666666554332111
Q ss_pred HHHHHhCCCCCCCceEEeeccccccccccCChhhhccCCCCEEEEecCCCCCCchHHHHHHHHcCC-------CCCcEEE
Q 005761 387 RQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGD-------HNSLLVL 459 (678)
Q Consensus 387 ~~~~~~~~~~pF~~~~~~~~~~l~~~~~i~~~~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d-------~~N~Iil 459 (678)
.+.| +... +.......--++++|...-+ +...+.+.|.+. +..++||
T Consensus 279 --------~~~~-----i~~~-----------~~~~~~~~~~lii~TG~qge--p~aaL~r~a~~~h~~~~i~~gD~vIf 332 (555)
T COG0595 279 --------DESF-----IEIR-----------EVKRYPDEEVLIICTGSQGE--PMAALSRMANGEHRYVKIKEGDTVIF 332 (555)
T ss_pred --------cccc-----cCHH-----------HhccccccceEEEEeCCCCC--chhhhhHhhcCCccceecCCCCeEEE
Confidence 1111 1110 11111122234455543222 222222222211 2234444
Q ss_pred c----cCcch--hcccCCCCceeeEEE-----EeecccCCCHhhHHHHHHhhCCCEEEEecCCcccccccc----cCCc-
Q 005761 460 E----NEVDA--ELAVLPFKPISMKVL-----QCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----VTSF- 523 (678)
Q Consensus 460 t----~gy~~--~~tl~~~~~v~~~v~-----~~~fs~had~~~l~~li~~~~P~~vilvHg~~~~~~~l~----~~~~- 523 (678)
. +|+.. ...+......-+++. .+--|+|+..+++..+++.++|+.+|-+||+.......+ +.|+
T Consensus 333 ss~~ipgne~~~~~~~n~l~~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~~~a~la~~~G~~ 412 (555)
T COG0595 333 SSSPIPGNEAAVYRLLNRLYKAGAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRMLVAHAKLAEEEGIP 412 (555)
T ss_pred eccCcCCcHHHHHHHHHHHHhcCcEEeecccceeEecCCCChHHHHHHHHhhCCceecccCCCcHHHHHHHHHHHhcCCC
Confidence 1 23111 011111111222222 334799999999999999999999999999975543333 2232
Q ss_pred --eEeecCCCcEEEeCCCC
Q 005761 524 --SVSHYSENETIHIPSLK 540 (678)
Q Consensus 524 --~v~~p~~ge~v~i~~~~ 540 (678)
+++..+||+.+.+....
T Consensus 413 ~~~i~i~~nG~v~~l~~~~ 431 (555)
T COG0595 413 QENIFILRNGDVLELEGGK 431 (555)
T ss_pred cccEEEecCceEEEecCCc
Confidence 68999999999998654
No 10
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.89 E-value=6.2e-23 Score=189.10 Aligned_cols=120 Identities=26% Similarity=0.404 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhCCC--ceeEEEEChhHHHHHHHHHhcHHHHhHHHHHHHhCCC-CCCCceEEeeccccccccccCCh
Q 005761 342 FLQLLEQIAIFMECSSL--KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD-PLFAHVKLIKEKKIHVFPAVHSP 418 (678)
Q Consensus 342 ~qELl~~L~~~~~~~~l--~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~-~pF~~~~~~~~~~l~~~~~i~~~ 418 (678)
+|||+.+|+++|+++.+ ++|||++|++|.+++++|+++.|||++.+++++...+ +||.+++.++. +++.
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 72 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFVKS--------VDES 72 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEEES--------HHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEecc--------cccc
Confidence 69999999999999986 6999999999999999999999999999887776543 38988888876 4333
Q ss_pred hhhccCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEccCcchhcccC
Q 005761 419 KLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVL 470 (678)
Q Consensus 419 ~~~~~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt~gy~~~~tl~ 470 (678)
+.+....+|||||||+|||++|+|+++|++|++||+|+||| +||++++|++
T Consensus 73 ~~l~~~~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~-~gy~~~~T~g 123 (126)
T PF10996_consen 73 KELNALSGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIF-TGYQAPGTLG 123 (126)
T ss_dssp HHHHHSCSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEE-SSS--TTSHH
T ss_pred cccccCCCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEE-ecCCCCCCcc
Confidence 33444569999999999999999999999999999999999 8999999875
No 11
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.56 E-value=2.2e-14 Score=148.04 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=109.8
Q ss_pred CEEEEecCCCC------------------CC----CCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcc
Q 005761 1 MKFTCLCQGGG------------------FN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSD 58 (678)
Q Consensus 1 mkl~~Lg~~~~------------------~~----~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~ 58 (678)
||+|+||.|++ .+ ..+|++|+.++.+||+|||.... .
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~~------------~--------- 59 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPDL------------A--------- 59 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChHH------------h---------
Confidence 99999999855 22 36899999999999999996410 0
Q ss_pred cccccccCCCCccccccccCCcccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhH
Q 005761 59 SQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMM 136 (678)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll 136 (678)
.. ++..+||+|||||. ||++||+.+.....-..+||++..+..+..
T Consensus 60 --------------------~~---------~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~--- 107 (250)
T PRK11244 60 --------------------ER---------FPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDD--- 107 (250)
T ss_pred --------------------hc---------CCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHH---
Confidence 00 23568999999999 999999887542334568999987754322
Q ss_pred HHHHHHHHhhhhhcCCCCCCCcccchhhhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcc-eEecCCCeEEeCC
Q 005761 137 EELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKV-QTLRFGEEACYNG 215 (678)
Q Consensus 137 ~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i-~~v~y~e~v~i~g 215 (678)
+.+. | + . ..+ ..++.++++++ |
T Consensus 108 --~~~~---------~-----------------------------~--~--------------~~~~~~l~~~~~~~~-~ 130 (250)
T PRK11244 108 --LFKH---------P-----------------------------G--I--------------LDFSHPLEPFEPFDL-G 130 (250)
T ss_pred --HhcC---------c-----------------------------c--c--------------cccccccCCCCCeeE-C
Confidence 1100 0 0 0 011 23556778888 5
Q ss_pred CeEEEEEecCCCcccEEEEEeeCCeeEEEecCCCCCcCCCCcccccccCCCCeEeec
Q 005761 216 ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (678)
Q Consensus 216 ~l~it~~~sGH~lGs~~~~I~~~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~ 272 (678)
+++|+++++.|..++.+|+|+.++++|+| |||+....- .-.+.-...++|+++.+
T Consensus 131 ~~~I~~~~~~H~~~s~g~~i~~~~~~i~y-sgDt~~~~~-~~~~~~~~~~~Dlli~e 185 (250)
T PRK11244 131 GLQVTPLPLNHSKLTFGYLLETAHSRVAY-LTDTVGLPE-DTLKFLRNNQPDLLVLD 185 (250)
T ss_pred CEEEEEEeeCCCcceeEEEEecCCeEEEE-EcCCCCCCH-HHHHHHhcCCCCEEEEe
Confidence 89999999999999999999999999999 999831100 00011002467888764
No 12
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.46 E-value=1.7e-13 Score=145.15 Aligned_cols=137 Identities=21% Similarity=0.237 Sum_probs=95.0
Q ss_pred EEEEecCCCCCC----CCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCcccccccc
Q 005761 2 KFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFA 77 (678)
Q Consensus 2 kl~~Lg~~~~~~----~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (678)
||++||++++.+ +.+|++|+.++.+||+|||.+....
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~~~--------------------------------------- 41 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQRQ--------------------------------------- 41 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHHHH---------------------------------------
Confidence 689999985543 4699999999999999999873310
Q ss_pred CCcccccccccCCCCCCccEEEecCC--CCCChhhhhccccCC-----CcEEEecHHHHHHHHHhHHHHHHHHHhhhhhc
Q 005761 78 EPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGF-----SAKIYITEAAARIGQLMMEELICMNMEYRQFY 150 (678)
Q Consensus 78 ~p~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf-----~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~ 150 (678)
.. ...+++.++|+|||||. ||++|||.+.....+ ..+||++..+.+..+.++. ....
T Consensus 42 --l~-----~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~----~~~~----- 105 (299)
T TIGR02651 42 --ML-----RSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLR----VSYT----- 105 (299)
T ss_pred --HH-----HcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHH----Hccc-----
Confidence 00 01134668999999999 999999988753322 3579999998765433221 1000
Q ss_pred CCCCCCCcccchhhhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCC-eEEeCCCeEEEEEecCCCcc
Q 005761 151 GAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE-EACYNGILIIKAFSSGLDIG 229 (678)
Q Consensus 151 ~~~~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e-~v~i~g~l~it~~~sGH~lG 229 (678)
| .. .+ -.+..+..++ .+.. ++++|++++.-|...
T Consensus 106 ---------~--------------------~~------~~---------~~~~~~~~~~~~~~~-~~~~v~~~~~~H~~~ 140 (299)
T TIGR02651 106 ---------Y--------------------LN------YP---------IKIHEIEEGGLVFED-DGFKVEAFPLDHSIP 140 (299)
T ss_pred ---------C--------------------CC------ce---------EEEEEccCCCceEec-CCEEEEEEEcCCCCc
Confidence 0 00 00 0345566666 4666 689999999999999
Q ss_pred cEEEEEeeC
Q 005761 230 ACNWIISGA 238 (678)
Q Consensus 230 s~~~~I~~~ 238 (678)
+.+|+|+.+
T Consensus 141 ~~gy~i~~~ 149 (299)
T TIGR02651 141 SLGYRFEEK 149 (299)
T ss_pred eEEEEEEEC
Confidence 999999854
No 13
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.45 E-value=4e-13 Score=142.24 Aligned_cols=176 Identities=16% Similarity=0.136 Sum_probs=113.3
Q ss_pred CEEEEecCCC--CCC----------------------CCceEEEEECC-EEEEEeCCCCCccccccCCCCCccccccccc
Q 005761 1 MKFTCLCQGG--GFN----------------------FPPCHILNVSG-FHVLFDCPLDLSALTVFSPLPNDFYKAICKE 55 (678)
Q Consensus 1 mkl~~Lg~~~--~~~----------------------~~sc~lL~~~~-~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~ 55 (678)
||||+||.|+ +.+ .++|++|+.++ .+||+|||.++..-+
T Consensus 1 m~lt~LGtg~~~g~P~~~C~C~~C~~ar~~~~~~~~R~~ss~li~~~g~~~iLiD~G~g~~~ql---------------- 64 (302)
T PRK05184 1 MRIIVLGSAAGGGFPQWNCNCPNCRGARAGTIRAKPRTQSSIAVSADGEDWVLLNASPDIRQQI---------------- 64 (302)
T ss_pred CEEEEEEecCCCCCCcCCCCchhchhhhcCCCcCCcccccEEEEEcCCCEEEEEECChhHHHHH----------------
Confidence 9999999852 112 36889999866 469999998854210
Q ss_pred CcccccccccCCCCccccccccCCcccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHH
Q 005761 56 NSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQ 133 (678)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~ 133 (678)
....+. .| ...+++.+||+|||||+ ||++|||+|.. +...+||+++.|.+..+
T Consensus 65 -------------------~~~~~~--~~--~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~~~~~~l~ 119 (302)
T PRK05184 65 -------------------QATPAL--QP--ARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATPAVLEDLS 119 (302)
T ss_pred -------------------Hhchhc--Cc--cccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCHHHHHHHH
Confidence 000000 00 12345678999999999 99999999954 56789999999865432
Q ss_pred HhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEe
Q 005761 134 LMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACY 213 (678)
Q Consensus 134 ~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i 213 (678)
.... |.. . . .-| ..+ .++.+.-++++++
T Consensus 120 ~~~~----------------------~f~--------~-------------~----~~~----~~~-~~~~i~~~~~~~i 147 (302)
T PRK05184 120 TGFP----------------------IFN--------V-------------L----DHY----GGV-QRRPIALDGPFAV 147 (302)
T ss_pred hcCC----------------------ccc--------c-------------c----ccc----cce-eeEEecCCCceEe
Confidence 1100 000 0 0 000 001 3455666678888
Q ss_pred C--CCeEEEEEecCC-------------CcccEEEEEe--eCCeeEEEecCCCCCcCCCCcccccccCCCCeEeecC
Q 005761 214 N--GILIIKAFSSGL-------------DIGACNWIIS--GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 273 (678)
Q Consensus 214 ~--g~l~it~~~sGH-------------~lGs~~~~I~--~~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~~ 273 (678)
. ++++|++++.-| ...+.+|+|+ .++++++|+|+|.... +--...++++|+||++.
T Consensus 148 ~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~----~~~~~~~~gaDlli~da 220 (302)
T PRK05184 148 PGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVT----DALRARLAGADCVLFDG 220 (302)
T ss_pred cCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCC----HHHHHHHhcCCEEEEeC
Confidence 4 379999999965 3679999995 7788999965664221 11123478999999864
No 14
>PRK02113 putative hydrolase; Provisional
Probab=99.40 E-value=1.2e-12 Score=135.08 Aligned_cols=167 Identities=18% Similarity=0.187 Sum_probs=110.2
Q ss_pred CEEEEecCCCCC--CC------------------CceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccc
Q 005761 1 MKFTCLCQGGGF--NF------------------PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60 (678)
Q Consensus 1 mkl~~Lg~~~~~--~~------------------~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~ 60 (678)
|++++||+|+.+ +. ++|++|+.++.+||+|||.+....
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~iLiD~G~g~~~~---------------------- 58 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVETEGARILIDCGPDFREQ---------------------- 58 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEECCeEEEEECCchHHHH----------------------
Confidence 999999966322 32 367999999999999999873310
Q ss_pred cccccCCCCccccccccCCcccccccccCCCCCCccEEEecCC--CCCChhhhhccc-cCCCcEEEecHHHHHHHHHhHH
Q 005761 61 NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRM-EGFSAKIYITEAAARIGQLMME 137 (678)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~-~gf~~~IY~T~pT~~l~~~ll~ 137 (678)
+. ..++.++|+|||||. ||++|||++... .....+||+++.+.+..+..+.
T Consensus 59 -------------------l~-------~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~ 112 (252)
T PRK02113 59 -------------------ML-------RLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMP 112 (252)
T ss_pred -------------------HH-------hcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCC
Confidence 00 013568999999999 999999988532 1236789999987554321110
Q ss_pred HHHHHHHhhhhhcCCCCCCCcccchhhhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCe
Q 005761 138 ELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGIL 217 (678)
Q Consensus 138 d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l 217 (678)
.. ..+ ..|.++. ..+++.++.++++++ +++
T Consensus 113 ----~~------~~~-------------------------------------~~~~~~~--~~~~~~~~~g~~~~~-~~~ 142 (252)
T PRK02113 113 ----YC------FVE-------------------------------------HSYPGVP--NIPLREIEPDRPFLV-NHT 142 (252)
T ss_pred ----ee------ecc-------------------------------------CCCCCCc--ceeeEEcCCCCCEEE-CCe
Confidence 00 000 0000000 014677888899999 589
Q ss_pred EEEEEecCCC-cccEEEEEeeCCeeEEEecCCCCCcCCCCcccccccCCCCeEeecC
Q 005761 218 IIKAFSSGLD-IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 273 (678)
Q Consensus 218 ~it~~~sGH~-lGs~~~~I~~~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~~ 273 (678)
+|++++.-|. ..+.+|++ ++++| +||+... .+.-.+.++++|+||.+.
T Consensus 143 ~i~~~~~~H~~~~~~gy~i----~~i~y-~~Dt~~~---~~~~~~~~~~~DlLi~e~ 191 (252)
T PRK02113 143 EVTPLRVMHGKLPILGYRI----GKMAY-ITDMLTM---PEEEYEQLQGIDVLVMNA 191 (252)
T ss_pred EEEEEEecCCCccEEEEEe----CCEEE-ccCCCCC---CHHHHHHhcCCCEEEEhh
Confidence 9999999996 56888888 47999 8998311 011123467899998763
No 15
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.40 E-value=9e-13 Score=139.94 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=92.9
Q ss_pred EEEecCCCCCC----CCceEEEEEC----CEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccc
Q 005761 3 FTCLCQGGGFN----FPPCHILNVS----GFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDL 74 (678)
Q Consensus 3 l~~Lg~~~~~~----~~sc~lL~~~----~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (678)
|++||.+++.+ +.||+++++. +.+||+|||.+....
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~------------------------------------ 44 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQ------------------------------------ 44 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHHHH------------------------------------
Confidence 57899985554 4799999985 379999999884310
Q ss_pred cccCCcccccccccCCCCCCccEEEecCC--CCCChhhhhcccc---C--CCcEEEecHHHHHHHHHhHHHHHHHHHhhh
Q 005761 75 IFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME---G--FSAKIYITEAAARIGQLMMEELICMNMEYR 147 (678)
Q Consensus 75 ~~~~p~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~---g--f~~~IY~T~pT~~l~~~ll~d~~~~~~~~~ 147 (678)
.. ...+++.+||+|||||. ||++|||.|.... + -..+||+++.+.+..+.++. +..
T Consensus 45 -----l~-----~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~----~~~--- 107 (303)
T TIGR02649 45 -----LL-----HTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALR----ISG--- 107 (303)
T ss_pred -----HH-----HhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHH----hcc---
Confidence 00 11245689999999999 9999999875321 2 23589999998775433221 110
Q ss_pred hhcCCCCCCCcccchhhhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCC
Q 005761 148 QFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 227 (678)
Q Consensus 148 ~~~~~~~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~ 227 (678)
.|. . .+ -.++.+..++.+.. ++++|++++.-|.
T Consensus 108 -----------~~~--------------------~------~~---------~~~~~i~~~~~~~~-~~~~v~~~~~~H~ 140 (303)
T TIGR02649 108 -----------SWT--------------------D------YP---------LEIVEIGAGEILDD-GLRKVTAYPLEHP 140 (303)
T ss_pred -----------ccc--------------------C------Cc---------eEEEEcCCCceEec-CCeEEEEEEccCc
Confidence 000 0 00 13556666777776 5799999999999
Q ss_pred cccEEEEEee
Q 005761 228 IGACNWIISG 237 (678)
Q Consensus 228 lGs~~~~I~~ 237 (678)
..+.+|+|+.
T Consensus 141 ~~~~gy~i~~ 150 (303)
T TIGR02649 141 LECYGYRIEE 150 (303)
T ss_pred cceEEEEEec
Confidence 9999999975
No 16
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.37 E-value=2.5e-12 Score=131.75 Aligned_cols=126 Identities=15% Similarity=0.099 Sum_probs=92.4
Q ss_pred CCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCcccccccccCCCCC
Q 005761 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (678)
Q Consensus 14 ~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~ 93 (678)
.++|++|+.++.+||||||+... . ..++..
T Consensus 26 ~~~s~~i~~~~~~iliD~G~~~~------------~--------------------------------------~~~~~~ 55 (238)
T TIGR03307 26 QPCSAVIEFNGARTLIDAGLTDL------------A--------------------------------------ERFPPG 55 (238)
T ss_pred cceEEEEEECCcEEEEECCChhH------------h--------------------------------------hccCcc
Confidence 57899999999999999996511 0 001356
Q ss_pred CccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhchh
Q 005761 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (678)
Q Consensus 94 ~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~~ 171 (678)
.||+|||||. ||++||+.+....+-..+||+++.|..+. ++.+.
T Consensus 56 ~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~-----~~~~~----------------------------- 101 (238)
T TIGR03307 56 SLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCD-----DLFKH----------------------------- 101 (238)
T ss_pred CCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHH-----HHhcC-----------------------------
Confidence 8999999999 99999987754333467899999875421 11100
Q ss_pred hhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEEEEEeeCCeeEEEecCCC
Q 005761 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (678)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~~~I~~~~~~I~Y~sgD~ 249 (678)
.+ +.. -...+..++++.+ |+++|+++++.|..++.+|+|+.++++++| +||+
T Consensus 102 ---------~~-----~~~----------~~~~~~~~~~~~~-~~~~i~~~~~~H~~~~~g~~i~~~~~~i~y-~gDt 153 (238)
T TIGR03307 102 ---------PG-----ILD----------FSKPLEAFEPFDL-GGLRVTPLPLVHSKLTFGYLLETDGQRVAY-LTDT 153 (238)
T ss_pred ---------cc-----ccc----------ccccccCCceEEE-CCEEEEEEecCCCCcceEEEEecCCcEEEE-EecC
Confidence 00 000 0123567788999 589999999999999999999999999999 9998
No 17
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal
Probab=99.35 E-value=1.8e-12 Score=123.89 Aligned_cols=117 Identities=16% Similarity=0.260 Sum_probs=92.8
Q ss_pred EEecHHHHhhhhhhhhhcCCcceeEEEEEEEEeCC---------------eeeeecCCC------C--------------
Q 005761 545 LEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHG---------------KHQLLPENE------P-------------- 589 (678)
Q Consensus 545 v~l~~~l~~~l~~~~~~~~~~~~a~v~g~l~~~d~---------------~~~l~~~~~------~-------------- 589 (678)
|+|+++|+++|.|+++ .+.++|||+|.|...+. ...+.+... .
T Consensus 1 VkL~D~Lv~~Lkwq~v--~~~eVa~V~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 78 (161)
T PF13299_consen 1 VKLSDSLVSSLKWQKV--RDYEVAWVDGRLEGSEDPDAIENAEEEINSNTEFSLKPVEEEGTETENKASKKEQSPELDVL 78 (161)
T ss_pred CCCCHHHHhhCCceec--CCCEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence 5789999999999999 59999999999995211 111111100 0
Q ss_pred -------CCCCCCCCceEecCCChHHHHHHHHHCCCceeEe-eccccCcCCCceEEEEeCCCCcEEEEecceeEEEcC-C
Q 005761 590 -------GGSSQTRPFLHWGSPDPENLLAELSKMGINGSVE-RCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAA-D 660 (678)
Q Consensus 590 -------~~~~~~~~~~~~g~~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~I~~~~~~t~I~~~-~ 660 (678)
....+.|+++++|+++|.+|++.|.+.|++++|. +|++ .|+..|.|+..+++.|.+||+ .|+ |
T Consensus 79 ~~~~~~~~~~~~~~~~~~iGd~rL~~lk~~L~~~g~~aEF~g~G~L----v~~~~V~VrK~~~G~i~ieG~----~~~~y 150 (161)
T PF13299_consen 79 PTLEALPSSERPGHQSLFIGDLRLSDLKQALQSAGIQAEFRGEGVL----VCNGGVAVRKSEDGRIVIEGC----LSEDY 150 (161)
T ss_pred cccccccccccCCCCceecCcccHHHHHHHHHHCCCceEEeeCCeE----EECCEEEEEEcCCCCEEEEec----CchhH
Confidence 0001236789999999999999999999999999 8877 467779999989999999999 999 9
Q ss_pred HHHHHHHHHHH
Q 005761 661 KNLASRIVKAM 671 (678)
Q Consensus 661 ~~~r~~l~d~~ 671 (678)
|++|++||+.+
T Consensus 151 y~VR~~iy~~~ 161 (161)
T PF13299_consen 151 YKVRKLIYEQL 161 (161)
T ss_pred HHHHHHHHhhC
Confidence 99999999863
No 18
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.27 E-value=3.7e-11 Score=126.98 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=86.3
Q ss_pred CCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhh
Q 005761 89 LWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEEL 166 (678)
Q Consensus 89 ~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 166 (678)
.++...||+|||||. ||++||+.|.+ +...|||+++.|.+..+.. . . +
T Consensus 74 gl~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~t~~~L~~~-~----~-----------------------~ 123 (302)
T TIGR02108 74 GLRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEMVLQDLSDN-P----I-----------------------F 123 (302)
T ss_pred CCCcccCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHHHHHHHHhC-C----C-----------------------c
Confidence 457889999999999 99999999965 5678999999987653210 0 0 0
Q ss_pred hhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeC----CCeEEEEEecC--------C------Cc
Q 005761 167 ELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN----GILIIKAFSSG--------L------DI 228 (678)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~----g~l~it~~~sG--------H------~l 228 (678)
.. ...| . -+.+.+..++++.+. ++++|++++.- | ..
T Consensus 124 ~~----------------~~~~---------~-~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~ 177 (302)
T TIGR02108 124 NV----------------LDHW---------N-VRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPG 177 (302)
T ss_pred cc----------------cchh---------h-ccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCC
Confidence 00 0000 0 123556667777764 25999999998 5 25
Q ss_pred ccEEEEEeeC--CeeEEEecCCCCCcCCCCcccccccCCCCeEeecC
Q 005761 229 GACNWIISGA--KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 273 (678)
Q Consensus 229 Gs~~~~I~~~--~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~~ 273 (678)
.+.+|+|+.+ +++++| ++|+. ...+.-++.++++|++|++.
T Consensus 178 ~~~Gy~i~~~~~g~~~~y-~tD~g---~~~~~~~~~l~~~d~liida 220 (302)
T TIGR02108 178 DTLGLKIEDGTTGKRLFY-IPGCA---EITDDLKARMAGADLVFFDG 220 (302)
T ss_pred CcEEEEEEeCCCCcEEEE-ECCCC---CCCHHHHHHHhCCCEEEEeC
Confidence 7899999988 899999 77762 11122224588999999874
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.26 E-value=7.2e-11 Score=119.92 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=95.8
Q ss_pred CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCc
Q 005761 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 80 (678)
||++.||. +|++|+.++.+||+||+..-. | . .++
T Consensus 1 m~i~~lG~-------s~~li~~~~~~iLiDP~~~~~------~---~------------------------------~~~ 34 (228)
T PRK00685 1 MKITWLGH-------SAFLIETGGKKILIDPFITGN------P---L------------------------------ADL 34 (228)
T ss_pred CEEEEEcc-------eEEEEEECCEEEEECCCCCCC------C---C------------------------------CCC
Confidence 89999985 499999999999999987511 0 0 001
Q ss_pred ccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCc
Q 005761 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (678)
Q Consensus 81 ~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~ 158 (678)
. .+..++|+|||||. ||+++++.+.. ....+||++..+.+..+.
T Consensus 35 ~--------~~~~~id~vliTH~H~DH~~~~~~~~~--~~~~~v~~~~~~~~~~~~------------------------ 80 (228)
T PRK00685 35 K--------PEDVKVDYILLTHGHGDHLGDTVEIAK--RTGATVIANAELANYLSE------------------------ 80 (228)
T ss_pred C--------hhcCcccEEEeCCCCccccccHHHHHH--hCCCEEEEeHHHHHHHHh------------------------
Confidence 0 01128999999999 99999887754 346799998754322110
Q ss_pred ccchhhhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcc---------
Q 005761 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG--------- 229 (678)
Q Consensus 159 ~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lG--------- 229 (678)
.+ +.+++.++.++++++ |+++|+++++-|...
T Consensus 81 ----------------------~~----------------~~~~~~~~~~~~~~~-~~~~i~~~p~~H~~~~~~~~~~~~ 121 (228)
T PRK00685 81 ----------------------KG----------------VEKTHPMNIGGTVEF-DGGKVKLTPALHSSSFIDEDGITY 121 (228)
T ss_pred ----------------------cC----------------CCceeeccCCCcEEE-CCEEEEEEEEEcCCCCcCCCCccc
Confidence 00 124667888899999 589999999999654
Q ss_pred ---cEEEEEeeCCeeEEEecCCCC
Q 005761 230 ---ACNWIISGAKGNIAYISGSNF 250 (678)
Q Consensus 230 ---s~~~~I~~~~~~I~Y~sgD~~ 250 (678)
+.+|+|+.++++|+| |||+.
T Consensus 122 ~~~~~g~~i~~~~~~i~~-~GDt~ 144 (228)
T PRK00685 122 LGNPTGFVITFEGKTIYH-AGDTG 144 (228)
T ss_pred CCCceEEEEEECCeEEEE-ecCcc
Confidence 589999999999999 99983
No 20
>PRK00055 ribonuclease Z; Reviewed
Probab=99.26 E-value=7.7e-12 Score=130.10 Aligned_cols=89 Identities=22% Similarity=0.260 Sum_probs=65.8
Q ss_pred CEEEEecCCCCCC----CCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccc
Q 005761 1 MKFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (678)
Q Consensus 1 mkl~~Lg~~~~~~----~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (678)
||+++||+|+..+ +++|++|+.++.+||+|||.+....
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~~-------------------------------------- 43 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQRQ-------------------------------------- 43 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHHH--------------------------------------
Confidence 8999999984332 4899999999999999999873210
Q ss_pred cCCcccccccccCCCCCCccEEEecCC--CCCChhhhhccccC-----CCcEEEecHHHHHHHHHh
Q 005761 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEG-----FSAKIYITEAAARIGQLM 135 (678)
Q Consensus 77 ~~p~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~g-----f~~~IY~T~pT~~l~~~l 135 (678)
.. ...+++.+||+|||||. ||++|||.|..... -..+||+++.+.+..+.+
T Consensus 44 ---l~-----~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~ 101 (270)
T PRK00055 44 ---LL-----KTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETL 101 (270)
T ss_pred ---HH-----HcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHHH
Confidence 00 01235678999999999 99999998864221 235799999887765443
No 21
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.14 E-value=1.1e-10 Score=113.29 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=94.4
Q ss_pred CCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCcccccccccCCC
Q 005761 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (678)
Q Consensus 12 ~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d 91 (678)
+.+++|++|+.++..||+|||..... . +...+.. ..
T Consensus 3 ~~~~~~~li~~~~~~iliD~g~~~~~-----------~------------------------~~~~l~~---------~~ 38 (183)
T smart00849 3 GVGVNSYLVEGDGGAILIDTGPGEAE-----------D------------------------LLAELKK---------LG 38 (183)
T ss_pred ccceeEEEEEeCCceEEEeCCCChhH-----------H------------------------HHHHHHH---------cC
Confidence 45789999999999999999966221 0 0000111 12
Q ss_pred CCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhc
Q 005761 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (678)
Q Consensus 92 ~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l 169 (678)
...||+|+|||. ||++|+|.+.+. ++.+||++..+.+..+..+.. .. .
T Consensus 39 ~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~~~~~~~~~----~~------~------------------ 88 (183)
T smart00849 39 PKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAELLKDLLKL----GG------A------------------ 88 (183)
T ss_pred chhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhHHHhccchh----cc------c------------------
Confidence 568999999999 999999999884 678999998887644322111 00 0
Q ss_pred hhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEec-CCCcccEEEEEeeCCeeEEEecCC
Q 005761 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGS 248 (678)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~s-GH~lGs~~~~I~~~~~~I~Y~sgD 248 (678)
+.. . . .....+..+..++++.+. +.+++++++ ||..|++.|.++. .+++| +||
T Consensus 89 ~~~---------~--~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~--~~vl~-~gD 142 (183)
T smart00849 89 LGA---------E--A-----------PPPPPDRTLKDGEELDLG-GLELEVIHTPGHTPGSIVLYLPE--GKILF-TGD 142 (183)
T ss_pred cCc---------C--C-----------CCCccceecCCCCEEEeC-CceEEEEECCCCCCCcEEEEECC--CCEEE-ECC
Confidence 000 0 0 001246778889999995 556665554 9999999988764 89999 999
Q ss_pred CC
Q 005761 249 NF 250 (678)
Q Consensus 249 ~~ 250 (678)
+.
T Consensus 143 ~~ 144 (183)
T smart00849 143 LL 144 (183)
T ss_pred ee
Confidence 83
No 22
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.11 E-value=9.4e-11 Score=115.48 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=85.8
Q ss_pred CCccEEEecCC--CCCChhhhhcccc-CCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhc
Q 005761 93 SFIDVVLISSP--MGMLGLPFLTRME-GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (678)
Q Consensus 93 ~~ID~IlISH~--dH~g~LP~l~~~~-gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l 169 (678)
..||+|||||. ||++|||+|.... ....+||++..+.+..+.... .... |.
T Consensus 28 ~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~---~~~~---------------~~-------- 81 (194)
T PF12706_consen 28 PDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKF---GILD---------------LY-------- 81 (194)
T ss_dssp GCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHH---THHT---------------TC--------
T ss_pred CCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhc---cccc---------------cc--------
Confidence 48999999999 9999988886632 112399999999887663200 0000 00
Q ss_pred hhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEE----EEEeeCCeeEEEe
Q 005761 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN----WIISGAKGNIAYI 245 (678)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~----~~I~~~~~~I~Y~ 245 (678)
+ .. . -..+..+..++.+++ |+++|+++++.|..+++. |+|+.++++|+|
T Consensus 82 ~----------~~-------~--------~~~~~~~~~~~~~~~-~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~- 134 (194)
T PF12706_consen 82 P----------EE-------D--------NFDIIEISPGDEFEI-GDFRITPFPANHGPPSYGGNKGFVIEPDGKKIFY- 134 (194)
T ss_dssp C----------TT-------S--------GEEEEEECTTEEEEE-TTEEEEEEEEESSSCCEEECCEEEEEETTEEEEE-
T ss_pred c----------cc-------c--------ceeEEEeccCceEEe-ceEEEEEEeccccccccccCceEEEecCCcceEE-
Confidence 0 00 0 024667777788998 689999999999999998 999999999999
Q ss_pred cCCCCCcCCCCcccccccCCCCeEeec
Q 005761 246 SGSNFASGHAMDFDYRAIQGSDLILYS 272 (678)
Q Consensus 246 sgD~~~~~h~~~~d~~~l~~~d~li~~ 272 (678)
+||+.. +.+.++++|+++.+
T Consensus 135 ~gD~~~-------~~~~~~~~D~li~~ 154 (194)
T PF12706_consen 135 SGDTNY-------DFEELKNIDLLILE 154 (194)
T ss_dssp ETSSSS-------CHHHHTTBSEEEEE
T ss_pred eeccch-------hhhhhccCCEEEEe
Confidence 999943 23345788998875
No 23
>PRK04286 hypothetical protein; Provisional
Probab=99.06 E-value=9.9e-10 Score=116.20 Aligned_cols=194 Identities=17% Similarity=0.070 Sum_probs=106.6
Q ss_pred CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccc-cCCCCCcccccccccCcccccccccCCCCccccccccCC
Q 005761 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTV-FSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~-f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 79 (678)
||+.+||++......+|++|+.++.+||+|+|........ +.|.|... + .+. ..+
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~------------------~-----~~~-~~~ 56 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIEL------------------E-----RLE-EVR 56 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhH------------------H-----HHH-HHH
Confidence 8999999863223359999999999999999977532210 11111000 0 000 001
Q ss_pred cccccccccCCCCCCccEEEecCC--CCCChhhhhc-c--ccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCC
Q 005761 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLT-R--MEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE 154 (678)
Q Consensus 80 ~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~-~--~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~ 154 (678)
. ........||+|||||. ||++++..+. . ...+..+||++.+|..- ...+.+.....+.
T Consensus 57 ~------~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~iy~~~~~~~~---~~~~~~~~~~~~~------- 120 (298)
T PRK04286 57 E------KILEYAKKADVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKIVLIK---DPTENINWSQRRR------- 120 (298)
T ss_pred H------HhhcccccCCEEEecCCccccCCCccccccccccccchHHHhcCceeccc---CHHHHcCHHHHhh-------
Confidence 1 12235678999999999 9997764431 1 11234688888887521 1111000000000
Q ss_pred CCCcccchhhhhhhchhhhhhhcccCCCCCCCCCCchH-HHHHHHHhcceEecCCCeEEeCCCeEEEEE-ecCCCcc--c
Q 005761 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI-AHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDIG--A 230 (678)
Q Consensus 155 ~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly-~dv~~~~~~i~~v~y~e~v~i~g~l~it~~-~sGH~lG--s 230 (678)
...+ ..++.. .....+..++++.+ |+++|++. +..|... +
T Consensus 121 ----------------------------------~~~~~~~v~~~-~~~~~~~~g~~~~i-g~~~V~~~~~v~H~~~~~~ 164 (298)
T PRK04286 121 ----------------------------------APRFLKAVKDI-AKKIEYADGKTFRF-GGTTIEFSPPVPHGADGSK 164 (298)
T ss_pred ----------------------------------HHhHHHHHHhc-CCceEECCCCEEEE-CCEEEEEeccCCCCCCCCc
Confidence 0001 222211 11244556788899 68999966 7788532 3
Q ss_pred EE----EEEeeCCeeEEEecCCCCCcCCCCcccccccC--CCCeEeecC
Q 005761 231 CN----WIISGAKGNIAYISGSNFASGHAMDFDYRAIQ--GSDLILYSD 273 (678)
Q Consensus 231 ~~----~~I~~~~~~I~Y~sgD~~~~~h~~~~d~~~l~--~~d~li~~~ 273 (678)
.+ ++|+.++++++| +||+.. +..+--...+. ++|+|+.++
T Consensus 165 ~Gy~i~~ri~~gg~~~~~-~gDt~~--~~~~~~~~~l~~~d~dlLi~~~ 210 (298)
T PRK04286 165 LGYVIMVRISDGDESFVF-ASDVQG--PLNDEAVEFILEKKPDVVIIGG 210 (298)
T ss_pred cceEEEEEEEeCCEEEEE-ECCCCC--CCCHHHHHHHhcCCCCEEEeCC
Confidence 33 466788999999 999841 00000011233 789888864
No 24
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.03 E-value=4.3e-11 Score=125.96 Aligned_cols=88 Identities=25% Similarity=0.276 Sum_probs=65.6
Q ss_pred CEEEEecCCCCCC----CCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccc
Q 005761 1 MKFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (678)
Q Consensus 1 mkl~~Lg~~~~~~----~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (678)
|++++||.+++.+ ..|.++|++.+.++|+|||-.....+
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~~l------------------------------------- 44 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQHQL------------------------------------- 44 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHHHH-------------------------------------
Confidence 8999999986544 46889999999999999998844211
Q ss_pred cCCcccccccccCCCCCCccEEEecCC--CCCChhhhhccccCC---C--cEEEecHHHHHHHHH
Q 005761 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGF---S--AKIYITEAAARIGQL 134 (678)
Q Consensus 77 ~~p~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf---~--~~IY~T~pT~~l~~~ 134 (678)
. ...+.+.+||+|+|||. ||+.|||-|.....| . .+||.....+.+...
T Consensus 45 ---~------~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~ 100 (292)
T COG1234 45 ---L------RAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVET 100 (292)
T ss_pred ---H------HhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhhh
Confidence 0 12234568999999999 999999977664444 2 379998888755444
No 25
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.97 E-value=1.5e-08 Score=110.48 Aligned_cols=277 Identities=15% Similarity=0.160 Sum_probs=157.6
Q ss_pred CccEEEecCC--CCCChhhhhccccCC-CcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhch
Q 005761 94 FIDVVLISSP--MGMLGLPFLTRMEGF-SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (678)
Q Consensus 94 ~ID~IlISH~--dH~g~LP~l~~~~gf-~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~ 170 (678)
..-+=++||+ ||-.||- ..+ .+++||..-|+.+....|. +
T Consensus 112 ~~s~yFLsHFHSDHy~GL~-----~sW~~p~lYCS~ita~Lv~~~~~----v---------------------------- 154 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLT-----KSWSHPPLYCSPITARLVPLKVS----V---------------------------- 154 (481)
T ss_pred ccceeeeeccccccccccc-----ccccCCcccccccchhhhhhhcc----c----------------------------
Confidence 3456799999 9977763 244 4669999999887554432 0
Q ss_pred hhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEEEEEeeC-CeeEEEecCCC
Q 005761 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA-KGNIAYISGSN 249 (678)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~~~I~~~-~~~I~Y~sgD~ 249 (678)
. ++.++.++-+|++.+. ++++|.+.|-|+.||+|+..+.. +.+++| |||+
T Consensus 155 --------------~-------------~~~i~~l~l~~~~~i~-~~~vt~ldAnHCPGa~mf~F~~~~~~~~lh-tGDF 205 (481)
T KOG1361|consen 155 --------------T-------------KQSIQALDLNQPLEIP-GIQVTLLDANHCPGAVMFLFELSFGPCILH-TGDF 205 (481)
T ss_pred --------------C-------------hhhceeecCCCceeec-ceEEEEeccccCCCceEEEeecCCCceEEe-cCCc
Confidence 0 1358899999999997 59999999999999999999865 459999 9999
Q ss_pred CCcCCCCcccccc-cCCCCeEeecCCCCCCCCCCc--ccCcccCCCcchhhhhccCCCCcccHHHHHHHHHHHHHHHHHH
Q 005761 250 FASGHAMDFDYRA-IQGSDLILYSDLSSLDSTEDI--DQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSV 326 (678)
Q Consensus 250 ~~~~h~~~~d~~~-l~~~d~li~~~~~~~p~~~Dv--~EsTyg~~~~~~~~~~~~~h~~~~~~~e~e~l~~~~~~I~~tl 326 (678)
..+. .+--.+ +.. . + .+|. .+.||-++.++++ .+++ .+.+..+.|..-.
T Consensus 206 R~s~---~m~~~p~~~~---------~--~-~i~~lyLDtTycnp~y~Fp--------sq~e-----svq~v~~~i~~~~ 257 (481)
T KOG1361|consen 206 RASA---DMSKEPALTL---------E--Q-TIDILYLDTTYCNPKYDFP--------SQEE-----SVQEVVDVIRSHA 257 (481)
T ss_pred ccCh---hhhhChHHhc---------C--C-ccceEEEeecccCCCCCCc--------cHHH-----HHHHHHHHHHhhh
Confidence 4221 110000 110 0 0 2232 5678988887762 2221 2222233333333
Q ss_pred hcCCe--EEEecCChHH---HHHHHHHHHHHHHhCCCceeEEEEChhHHHHHHHHHhcHHHHhHHHHHHHhCCCCCCCce
Q 005761 327 KAGGS--VLIPINRVGV---FLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHV 401 (678)
Q Consensus 327 ~~GG~--VLIP~~a~Gr---~qELl~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~pF~~~ 401 (678)
..+-+ ++|++|.+|+ .+|+...| ..+||+. +.-..+++... |-.+ +
T Consensus 258 ~~~~~~Li~v~~ysiGkE~l~~eia~~l---------~~kI~v~-~~~~~~~~~lg----~~d~------------~--- 308 (481)
T KOG1361|consen 258 SKNDRVLIVVGTYSIGKEKLLLEIARIL---------NSKIWVE-PRRLRLLQCLG----FDDE------------S--- 308 (481)
T ss_pred hhCCceEEEEEEEecchhHHHHHHHHHh---------CCceEEe-hhhchhhhhcC----CCCh------------h---
Confidence 33323 5677799997 55555555 7899997 22111111111 1000 0
Q ss_pred EEeeccccccccccCChhhh-ccCCCCEEEEecCCCCCC-chHHHHHHHHcCCCCCcEE--EccCcchhcccCCCC----
Q 005761 402 KLIKEKKIHVFPAVHSPKLL-MNWQEPCIVFSPHWSLRL-GPTIHLLRRWSGDHNSLLV--LENEVDAELAVLPFK---- 473 (678)
Q Consensus 402 ~~~~~~~l~~~~~i~~~~~~-~~~~~P~Vv~as~gmL~~-G~s~~~l~~~~~d~~N~Ii--lt~gy~~~~tl~~~~---- 473 (678)
... .+..+-+|-+++-..+.. -...++... ..+....++ .++|+.....+....
T Consensus 309 -----------------~~~s~d~~~ssvhv~~~~~l~~~~~l~~~~~~-~~~~~s~~v~~~~tgwt~~~~~s~~~~~~~ 370 (481)
T KOG1361|consen 309 -----------------KLLSIDVDESSVHVVPMNSLASSPSLKEYESQ-YEDGYSKLVGFSPTGWTKGKLVSLDKENSR 370 (481)
T ss_pred -----------------hhhccccccCceeEeehhhhccccchhhhhcc-cccCcceeEeecccccccccccccCccccc
Confidence 001 122233333333222221 111111111 112222222 235554443332111
Q ss_pred ---ceeeEEEEeecccCCCHhhHHHHHHhhCCCEEEEecCC
Q 005761 474 ---PISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEW 511 (678)
Q Consensus 474 ---~v~~~v~~~~fs~had~~~l~~li~~~~P~~vilvHg~ 511 (678)
.-+|.+..+|.|.|+.+.++.+|++.++|++||=+=++
T Consensus 371 ~~~~~~i~~~~vpYseHSs~~el~~f~~~lk~k~iiptv~~ 411 (481)
T KOG1361|consen 371 PQSGSKIPISLVPYSEHSSYTELSEFLSKLKPKTIIPTVNE 411 (481)
T ss_pred cccccccccccccccccCCHHHHHHHHHhcCCCeeecCccC
Confidence 11577788899999999999999999999999854444
No 26
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=98.91 E-value=8.2e-10 Score=81.45 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=35.5
Q ss_pred CceeeEEEEeecccCCCHhhHHHHHHhhCCCEEEEecCCc
Q 005761 473 KPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWR 512 (678)
Q Consensus 473 ~~v~~~v~~~~fs~had~~~l~~li~~~~P~~vilvHg~~ 512 (678)
.+++|+|..++||+|||.++|.+||+.++|++|++|||++
T Consensus 3 i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe~ 42 (43)
T PF07521_consen 3 IPVRARVEQIDFSGHADREELLEFIEQLNPRKVILVHGEP 42 (43)
T ss_dssp EE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSEH
T ss_pred EEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCCC
Confidence 5789999999999999999999999999999999999985
No 27
>PRK02126 ribonuclease Z; Provisional
Probab=98.81 E-value=3.6e-08 Score=105.70 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=36.8
Q ss_pred CCCCccEEEecCC--CCCChhhhhcccc-C--CCcEEEecHHHHHHHHHhH
Q 005761 91 NVSFIDVVLISSP--MGMLGLPFLTRME-G--FSAKIYITEAAARIGQLMM 136 (678)
Q Consensus 91 d~~~ID~IlISH~--dH~g~LP~l~~~~-g--f~~~IY~T~pT~~l~~~ll 136 (678)
++..||+|||||. ||++|+|.|.... + -..+||+.+.|.++.+..+
T Consensus 44 ~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~ 94 (334)
T PRK02126 44 ELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKL 94 (334)
T ss_pred CCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHh
Confidence 3568999999999 9999999998743 1 1248999999998876654
No 28
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.72 E-value=6.6e-08 Score=106.50 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=71.6
Q ss_pred CCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhh
Q 005761 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (678)
Q Consensus 90 ~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 167 (678)
++..+||.|++||. ||+|+++.|.+.. -..+||+++.+.++.+ ...
T Consensus 65 ~~~~~Id~IilTH~H~DHiggl~~l~~~~-p~a~V~~~~~~~~~l~----~~~--------------------------- 112 (394)
T PRK11921 65 IDLDKIDYIVANHGEIDHSGALPELMKEI-PDTPIYCTKNGAKSLK----GHY--------------------------- 112 (394)
T ss_pred cCcccCCEEEeCCCCCchhhHHHHHHHHC-CCCEEEECHHHHHHHH----HHh---------------------------
Confidence 35678999999999 9999999998732 2689999998865421 100
Q ss_pred hchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEec--CCCcccEEEEEeeCCeeEEEe
Q 005761 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYI 245 (678)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~s--GH~lGs~~~~I~~~~~~I~Y~ 245 (678)
. ..| +++.++.++++++ |+.+++++.+ +|..|++.+.++ ..+|+|
T Consensus 113 --------------~---~~~------------~~~~v~~g~~l~l-G~~~l~~i~tP~~H~p~~~~~y~~--~~~vLF- 159 (394)
T PRK11921 113 --------------H---QDW------------NFVVVKTGDRLEI-GSNELIFIEAPMLHWPDSMFTYLT--GDNILF- 159 (394)
T ss_pred --------------C---CCC------------ceEEeCCCCEEee-CCeEEEEEeCCCCCCCCceEEEEc--CCCEEE-
Confidence 0 011 3567888999999 6788888844 499999988874 578999
Q ss_pred cCCCC
Q 005761 246 SGSNF 250 (678)
Q Consensus 246 sgD~~ 250 (678)
|||.+
T Consensus 160 sgD~f 164 (394)
T PRK11921 160 SNDAF 164 (394)
T ss_pred ecCcc
Confidence 99974
No 29
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.60 E-value=1.7e-07 Score=105.36 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=72.8
Q ss_pred CCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhh
Q 005761 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (678)
Q Consensus 90 ~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 167 (678)
+++.+||+|++||. ||+|++|.|.+.. ...+||+|+.+.++.. ...
T Consensus 67 ~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-p~a~V~~s~~~~~~l~----~~~--------------------------- 114 (479)
T PRK05452 67 IDLADIDYIVINHAEEDHAGALTELMAQI-PDTPIYCTANAIDSIN----GHH--------------------------- 114 (479)
T ss_pred CCHhhCCEEEeCCCCcchhchHHHHHHHC-CCCEEEECHHHHHHHH----Hhh---------------------------
Confidence 35678999999999 9999999998732 2689999999875321 100
Q ss_pred hchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEec--CCCcccEEEEEeeCCeeEEEe
Q 005761 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYI 245 (678)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~s--GH~lGs~~~~I~~~~~~I~Y~ 245 (678)
. ... .+++.++.++++++.++.+++++.+ +|..|+..+.+. ..+|+|
T Consensus 115 --------------~--~~~------------~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~--~~~vLF- 163 (479)
T PRK05452 115 --------------H--HPE------------WNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT--GDAVLF- 163 (479)
T ss_pred --------------c--CCc------------CeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc--CCCEEE-
Confidence 0 000 1467889999999954567777766 599999998875 579999
Q ss_pred cCCCC
Q 005761 246 SGSNF 250 (678)
Q Consensus 246 sgD~~ 250 (678)
|||.+
T Consensus 164 sgD~f 168 (479)
T PRK05452 164 SNDAF 168 (479)
T ss_pred ecccc
Confidence 99974
No 30
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.56 E-value=1e-06 Score=95.03 Aligned_cols=99 Identities=19% Similarity=0.128 Sum_probs=70.6
Q ss_pred CCCCccEEEecCC--CCCC--hhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhh
Q 005761 91 NVSFIDVVLISSP--MGML--GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEEL 166 (678)
Q Consensus 91 d~~~ID~IlISH~--dH~g--~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 166 (678)
+...||+|||||. ||+. .+..+.+..+-.+++++...+.++.+ ++
T Consensus 106 ~i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~----~~--------------------------- 154 (355)
T PRK11709 106 AIREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWI----GW--------------------------- 154 (355)
T ss_pred HCCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHH----hc---------------------------
Confidence 4678999999999 9983 34555543333567888777754311 00
Q ss_pred hhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCC-----------Cc-------
Q 005761 167 ELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL-----------DI------- 228 (678)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH-----------~l------- 228 (678)
+. + -++++.++.++++++ |+++|++.+|-| ..
T Consensus 155 ---------------Gv------p--------~~rv~~v~~Ge~i~i-g~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~ 204 (355)
T PRK11709 155 ---------------GV------P--------KERCIVVKPGDVVKV-KDIKIHALDSFDRTALVTLPADGKAAGGVLPD 204 (355)
T ss_pred ---------------CC------C--------cceEEEecCCCcEEE-CCEEEEEEeccccccccccccccccccccccc
Confidence 10 0 026889999999999 589999999933 22
Q ss_pred ----ccEEEEEeeCCeeEEEecCCCCC
Q 005761 229 ----GACNWIISGAKGNIAYISGSNFA 251 (678)
Q Consensus 229 ----Gs~~~~I~~~~~~I~Y~sgD~~~ 251 (678)
.+++|+|+.++.+|.| +||+..
T Consensus 205 d~~~~~~gyvie~~~~tvy~-sGDT~~ 230 (355)
T PRK11709 205 DMDRRAVNYLFKTPGGNIYH-SGDSHY 230 (355)
T ss_pred cCCcceEEEEEEeCCeEEEE-eCCCCc
Confidence 2589999999999999 999943
No 31
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.53 E-value=1.3e-07 Score=91.61 Aligned_cols=143 Identities=17% Similarity=0.032 Sum_probs=86.7
Q ss_pred CCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCcccccccccCCC
Q 005761 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (678)
Q Consensus 12 ~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d 91 (678)
+.+.+||+|+.++..||+|||....... . .... ....+
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~~~~----------------------------------~--~~~~------~~~~~ 40 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPDFAK----------------------------------E--LELA------LLGIS 40 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHHHHH----------------------------------H--HHHH------HHHHT
T ss_pred CeeEEEEEEEECCEEEEEeCCCCchhhH----------------------------------H--hhhh------Hhhcc
Confidence 3468999999999999999999943200 0 0000 12345
Q ss_pred CCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhc
Q 005761 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (678)
Q Consensus 92 ~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l 169 (678)
..+|++|++||+ ||+||++++.+... ...+++....................
T Consensus 41 ~~~i~~vi~TH~H~DH~ggl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 94 (194)
T PF00753_consen 41 GEDIDAVILTHAHPDHIGGLPELLEAGP-VVIIYSSADAAKAIRPPDRDSASRRG------------------------- 94 (194)
T ss_dssp GGGEEEEEESSSSHHHHTTHHHHHHHTT-EEEEEEHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCCeEEEEECcccccccccccccccccc-eeeeeccccccccccccccccccccc-------------------------
Confidence 779999999999 99999999988433 34444444444443333222111000
Q ss_pred hhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEEEEEeeCCeeEEEecCCC
Q 005761 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (678)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~~~I~~~~~~I~Y~sgD~ 249 (678)
.............+..... .........+|..|++.+.+..++++++| |||.
T Consensus 95 --------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlf-tGD~ 146 (194)
T PF00753_consen 95 --------------------------PAVPPPPIIDEDEDDLEIG-GDRILFIIPGPGHGSDSLIIYLPGGKVLF-TGDL 146 (194)
T ss_dssp --------------------------HHHESEEEEEETTTEEEEE-TTEEEEEEESSSSSTTEEEEEETTTTEEE-EETT
T ss_pred --------------------------cccccccceeeeccccccc-ccccccceeccccCCcceEEEeCCCcEEE-eeeE
Confidence 0000122333444444443 34455555666667777777778999999 9998
Q ss_pred C
Q 005761 250 F 250 (678)
Q Consensus 250 ~ 250 (678)
.
T Consensus 147 ~ 147 (194)
T PF00753_consen 147 L 147 (194)
T ss_dssp S
T ss_pred e
Confidence 3
No 32
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.33 E-value=7.2e-06 Score=84.65 Aligned_cols=124 Identities=10% Similarity=-0.003 Sum_probs=76.5
Q ss_pred CCCccEEEecCC--CCCChhhhhcc-c-cC---CCc-EEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchh
Q 005761 92 VSFIDVVLISSP--MGMLGLPFLTR-M-EG---FSA-KIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKW 163 (678)
Q Consensus 92 ~~~ID~IlISH~--dH~g~LP~l~~-~-~g---f~~-~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~ 163 (678)
...++.|||||. ||++|||.+.- + .. -+. .||..+.+.++.+ ++.++.+..+..
T Consensus 38 ~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve----~~~~~~~~~~~~-------------- 99 (277)
T TIGR02650 38 VAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEE----ETSEFIKAANED-------------- 99 (277)
T ss_pred HhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHH----HHHHHHHHhhhh--------------
Confidence 457899999999 99999965543 2 11 122 4999988877544 333333211100
Q ss_pred hhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeC-C--CeEEEEEecCCCc---ccEEEEEe-
Q 005761 164 EELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN-G--ILIIKAFSSGLDI---GACNWIIS- 236 (678)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~-g--~l~it~~~sGH~l---Gs~~~~I~- 236 (678)
. .. . -.+.+++-++.+.+. + .+.|+|+...|.+ -|-+|.|.
T Consensus 100 ----------~------~~-------~---------~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~ 147 (277)
T TIGR02650 100 ----------L------FF-------F---------FNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEE 147 (277)
T ss_pred ----------h------cc-------C---------cccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEE
Confidence 0 00 0 034567777777776 2 4899999999996 35555442
Q ss_pred -------------------------------eCCeeEEEecCCCCCcCCCCcccccccCCCCeEeec
Q 005761 237 -------------------------------GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (678)
Q Consensus 237 -------------------------------~~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~ 272 (678)
....+|+| |||+... +....++||+||.+
T Consensus 148 ~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvy-sGDT~~~------~~~~a~~adlLIhE 207 (277)
T TIGR02650 148 RRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLI-IGDDLAA------DDEEEEGGEELIHE 207 (277)
T ss_pred EeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEE-eCCCCCC------ChHHhcCCCEEEEe
Confidence 11368999 9999432 22346678888753
No 33
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.26 E-value=7.5e-06 Score=78.71 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=44.1
Q ss_pred cceEecCCCeEEeCCCeEEEEEecCCC-------cccEEEEEeeCCeeEEEecCCCCCcCCCCcccccccCCCCeEeec
Q 005761 201 KVQTLRFGEEACYNGILIIKAFSSGLD-------IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (678)
Q Consensus 201 ~i~~v~y~e~v~i~g~l~it~~~sGH~-------lGs~~~~I~~~~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~ 272 (678)
+++.+..++.+++ |+++|+.+++-|. .+.++|+|+.++.+|.+ .||+.... ..-....+..+|++++.
T Consensus 61 ~~~vv~~~~~~~~-~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~-~Gd~~~~~--~~~~~~~~~~vDvl~~p 135 (163)
T PF13483_consen 61 DIHVVAPGGEYRF-GGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYH-AGDTGFPP--DDEQLKQLGKVDVLFLP 135 (163)
T ss_dssp SSEEE-TTEEEEC-TTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE--TT--S-----HHHHHHH-S-SEEEEE
T ss_pred ccEEEccceEEEE-eeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEE-ECCCccCC--CHHHHhcccCCCEEEec
Confidence 4667777888998 5899999998774 44899999999999999 99983110 01112335578888763
No 34
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.19 E-value=3.4e-06 Score=85.09 Aligned_cols=87 Identities=24% Similarity=0.263 Sum_probs=63.7
Q ss_pred CEEEEecCCC--CC-----CCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCcccc
Q 005761 1 MKFTCLCQGG--GF-----NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDAND 73 (678)
Q Consensus 1 mkl~~Lg~~~--~~-----~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (678)
||+|+|=-.. .. --+-++||+..+.+||+|.|.+...+++
T Consensus 1 mkitvl~dn~~~~~~~f~a~hGfS~LVE~~~~riLFDtG~~~~~ll~--------------------------------- 47 (259)
T COG1237 1 MKITVLVDNRAGARPGFRAEHGFSALVEDEGTRILFDTGTDSDVLLH--------------------------------- 47 (259)
T ss_pred CeEEEEEcCCCccCCcccccCceEEEEEcCCeEEEEeCCCCcHHHHH---------------------------------
Confidence 7888873210 00 1256788999999999999988443220
Q ss_pred ccccCCcccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHH
Q 005761 74 LIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAAR 130 (678)
Q Consensus 74 ~~~~~p~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~ 130 (678)
+.. ...+|+.+||+|+|||- ||+|||||+.+...-..||||.+-.+.
T Consensus 48 ---Na~-------~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 48 ---NAR-------LLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred ---HHH-------HcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 011 23568899999999998 999999999885556789999988766
No 35
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.17 E-value=5.3e-06 Score=85.59 Aligned_cols=82 Identities=15% Similarity=0.285 Sum_probs=62.0
Q ss_pred CccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhchh
Q 005761 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (678)
Q Consensus 94 ~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~~ 171 (678)
.+++||+||. ||+||++.|.+.. ..+||+++.+. +.
T Consensus 43 ~l~~Il~TH~H~DHigG~~~l~~~~--~~~V~~~~~~~------------~~---------------------------- 80 (248)
T TIGR03413 43 TLTAILLTHHHHDHVGGVAELLEAF--PAPVYGPAEER------------IP---------------------------- 80 (248)
T ss_pred eeeEEEeCCCCccccCCHHHHHHHC--CCeEEeccccc------------CC----------------------------
Confidence 5799999998 9999999998744 48899887540 00
Q ss_pred hhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEe-cCCCcccEEEEEeeCCeeEEEecCCC
Q 005761 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSN 249 (678)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~-sGH~lGs~~~~I~~~~~~I~Y~sgD~ 249 (678)
. ..+.+.-++.+.+ |+.+++.+. .||..|+..+.+. ..+++| |||+
T Consensus 81 ----------~------------------~~~~v~~g~~~~~-g~~~i~v~~tpGHT~g~i~~~~~--~~~~lf-tGDt 127 (248)
T TIGR03413 81 ----------G------------------ITHPVKDGDTVTL-GGLEFEVLAVPGHTLGHIAYYLP--DSPALF-CGDT 127 (248)
T ss_pred ----------C------------------CcEEeCCCCEEEE-CCEEEEEEECCCCCcccEEEEEC--CCCEEE-EcCc
Confidence 0 1235667788888 466777664 5899999999886 368999 9998
No 36
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.00 E-value=1.9e-05 Score=84.83 Aligned_cols=130 Identities=14% Similarity=0.025 Sum_probs=94.2
Q ss_pred CCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCcccccccccCCCC
Q 005761 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (678)
Q Consensus 13 ~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~ 92 (678)
++-++||+. ++..+|+|-+-.-.. . .+...+ ...+|+
T Consensus 34 ttyNSYLI~-~~k~aLID~~~~~~~-----------~-----------------------~~l~~l--------~~~id~ 70 (388)
T COG0426 34 TTYNSYLIV-GDKTALIDTVGEKFF-----------D-----------------------EYLENL--------SKYIDP 70 (388)
T ss_pred ceeeeEEEe-CCcEEEECCCCcchH-----------H-----------------------HHHHHH--------HhhcCh
Confidence 467899999 999999998866210 0 000011 134689
Q ss_pred CCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhch
Q 005761 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (678)
Q Consensus 93 ~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~ 170 (678)
.+||.|+++|. ||+|+||-+.+... +.+|+||.+.+++.+.+..+
T Consensus 71 k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~~~~L~~~~~~-------------------------------- 117 (388)
T COG0426 71 KEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLAARFLKGFYHD-------------------------------- 117 (388)
T ss_pred hcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHHHHHHHHhcCC--------------------------------
Confidence 99999999999 99999999998443 89999999998876654321
Q ss_pred hhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEE--ecCCCcccEEEEEeeCCeeEEEecCC
Q 005761 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYISGS 248 (678)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~--~sGH~lGs~~~~I~~~~~~I~Y~sgD 248 (678)
. ..++.++-++++++. +-+++++ +.=|.+|+..... ...+|+| |+|
T Consensus 118 -----------~-----------------~~~~ivk~Gd~ldlG-g~tL~Fi~ap~LHWPd~m~TYd--~~~kILF-S~D 165 (388)
T COG0426 118 -----------P-----------------EWFKIVKTGDTLDLG-GHTLKFIPAPFLHWPDTMFTYD--PEDKILF-SCD 165 (388)
T ss_pred -----------c-----------------cceeecCCCCEeccC-CcEEEEEeCCCCCCCCceeEee--cCCcEEE-ccc
Confidence 0 027789999999995 6455555 5577788766543 3578999 999
Q ss_pred CC
Q 005761 249 NF 250 (678)
Q Consensus 249 ~~ 250 (678)
.+
T Consensus 166 ~f 167 (388)
T COG0426 166 AF 167 (388)
T ss_pred cc
Confidence 84
No 37
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=97.97 E-value=3.5e-05 Score=78.27 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=64.7
Q ss_pred CccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhchh
Q 005761 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (678)
Q Consensus 94 ~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~~ 171 (678)
+|+.|++||. ||+|++..+.+... ..++|.................. .+ +
T Consensus 62 ~i~~vilTH~H~DH~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-----~----- 113 (252)
T COG0491 62 DVDAILLTHGHFDHIGGAAVLKEAFG-AAPVIAPAEVPLLLREEILRKAG-----------------VT-----A----- 113 (252)
T ss_pred ChheeeecCCchhhhccHHHHHhhcC-CceEEccchhhhhhhcccccccc-----------------cc-----c-----
Confidence 8999999999 99999999987333 46775555443332211000000 00 0
Q ss_pred hhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCC-CeEEEEEecCCCcccEEEEEeeCCeeEEEecCCC
Q 005761 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG-ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (678)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g-~l~it~~~sGH~lGs~~~~I~~~~~~I~Y~sgD~ 249 (678)
.. .+.+ .......+..++.+.+.| .+++.+.+ ||..|+..|.++.++ ++| +||.
T Consensus 114 ---------~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~tp-GHT~g~~~~~~~~~~--~l~-~gD~ 168 (252)
T COG0491 114 ---------EA----YAAP-------GASPLRALEDGDELDLGGLELEVLHTP-GHTPGHIVFLLEDGG--VLF-TGDT 168 (252)
T ss_pred ---------cc----CCCC-------ccccceecCCCCEEEecCeEEEEEECC-CCCCCeEEEEECCcc--EEE-ecce
Confidence 00 0001 012344556677788842 37888888 999999999998665 889 9998
No 38
>PLN02469 hydroxyacylglutathione hydrolase
Probab=97.88 E-value=7.7e-05 Score=77.35 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=60.2
Q ss_pred CCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhch
Q 005761 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (678)
Q Consensus 93 ~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~ 170 (678)
..|++||+||. ||+||++.|.+... ..+||+.... . +
T Consensus 45 ~~l~~Il~TH~H~DH~gG~~~l~~~~~-~~~V~~~~~~----------~--~---------------------------- 83 (258)
T PLN02469 45 AKIKLVLTTHHHWDHAGGNEKIKKLVP-GIKVYGGSLD----------N--V---------------------------- 83 (258)
T ss_pred CcccEEEecCCCCccccCHHHHHHHCC-CCEEEEechh----------c--C----------------------------
Confidence 36899999999 99999999988432 4789986521 0 0
Q ss_pred hhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEE-ecCCCcccEEEEEeeC--CeeEEEecC
Q 005761 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDIGACNWIISGA--KGNIAYISG 247 (678)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~-~sGH~lGs~~~~I~~~--~~~I~Y~sg 247 (678)
.+ .-+.+.-++.+.+.+.++++.+ --||..|+..|.+... ..+++| ||
T Consensus 84 ----------~~------------------~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lF-tG 134 (258)
T PLN02469 84 ----------KG------------------CTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVF-TG 134 (258)
T ss_pred ----------CC------------------CCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEE-ec
Confidence 00 0134566778888433444433 3599999999998642 356999 99
Q ss_pred CC
Q 005761 248 SN 249 (678)
Q Consensus 248 D~ 249 (678)
|.
T Consensus 135 Dt 136 (258)
T PLN02469 135 DT 136 (258)
T ss_pred Cc
Confidence 97
No 39
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.86 E-value=3.3e-06 Score=95.25 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=40.0
Q ss_pred CCeEEEEEecCCCcccEEEEEeeC-CeeEEEecCCCCCcCCCCcccccccCCCCeEeec
Q 005761 215 GILIIKAFSSGLDIGACNWIISGA-KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (678)
Q Consensus 215 g~l~it~~~sGH~lGs~~~~I~~~-~~~I~Y~sgD~~~~~h~~~~d~~~l~~~d~li~~ 272 (678)
|...|.-.++-||.-|+...|+.+ +.||+| |||+.... .=....+++|+||-+
T Consensus 594 ~l~~i~tc~viHCp~syg~~i~~~~~~Ki~Y-SGDTrP~~----~~v~~g~datlLIHE 647 (746)
T KOG2121|consen 594 GLESIQTCPVIHCPQSYGCSITHGSGWKIVY-SGDTRPCE----DLVKAGKDATLLIHE 647 (746)
T ss_pred CceeEEecCcEecChhhceeEecccceEEEE-cCCCCCch----hHhhhccCCceEEee
Confidence 568889999999999999999865 489999 99994221 112346788888743
No 40
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=97.83 E-value=9.2e-05 Score=87.05 Aligned_cols=135 Identities=13% Similarity=0.167 Sum_probs=86.6
Q ss_pred EEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCcc
Q 005761 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (678)
Q Consensus 2 kl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 81 (678)
+++++--| .|.|.+++.++..+|+|||..... + + . .++ . -.|+.
T Consensus 441 ~v~~lDVG----qGdaili~~~~~~iLIDtG~~~~~---------~-~-----------~---~~~-----~---l~p~L 484 (662)
T TIGR00361 441 QVDMLDVG----QGLAMFIGANGKGILYDTGEPWRE---------G-S-----------L---GEK-----V---IIPFL 484 (662)
T ss_pred EEEEEecC----CceEEEEEECCeEEEEeCCCCCCC---------C-C-----------c---cHH-----H---HHHHH
Confidence 56777554 367999999999999999965321 0 0 0 000 0 13443
Q ss_pred cccccccCCCCCCccEEEecCC--CCCChhhhhccccCCC-cEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCc
Q 005761 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFS-AKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (678)
Q Consensus 82 ~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~-~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~ 158 (678)
+ ..... ||.|+|||. ||+||++.+.+ .|. .+||..... . .
T Consensus 485 ~------~~Gi~-ID~lilTH~d~DHiGGl~~ll~--~~~v~~i~~~~~~--------~------~-------------- 527 (662)
T TIGR00361 485 T------AKGIK-LEALILSHADQDHIGGAEIILK--HHPVKRLVIPKGF--------V------E-------------- 527 (662)
T ss_pred H------HcCCC-cCEEEECCCchhhhCcHHHHHH--hCCccEEEeccch--------h------h--------------
Confidence 2 22345 999999999 89999999988 343 467654320 0 0
Q ss_pred ccchhhhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCC------CcccEE
Q 005761 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL------DIGACN 232 (678)
Q Consensus 159 ~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH------~lGs~~ 232 (678)
.+ ..++.+.-++.+++ ++++++.+.-+. -=.||.
T Consensus 528 ----------------------~~-----------------~~~~~~~~G~~~~~-~~~~~~vL~P~~~~~~~~N~~S~v 567 (662)
T TIGR00361 528 ----------------------EG-----------------VAIEECKRGDVWQW-QGLQFHVLSPEAPDPASKNNHSCV 567 (662)
T ss_pred ----------------------CC-----------------CceEecCCCCEEeE-CCEEEEEECCCCccCCCCCCCceE
Confidence 00 01234555667777 467777664322 135899
Q ss_pred EEEeeCCeeEEEecCCCC
Q 005761 233 WIISGAKGNIAYISGSNF 250 (678)
Q Consensus 233 ~~I~~~~~~I~Y~sgD~~ 250 (678)
+.++.++.++++ |||..
T Consensus 568 l~i~~~~~~~L~-tGD~~ 584 (662)
T TIGR00361 568 LWVDDGGNSWLL-TGDLE 584 (662)
T ss_pred EEEEECCeeEEE-ecCCC
Confidence 999999999999 99994
No 41
>PLN02398 hydroxyacylglutathione hydrolase
Probab=97.65 E-value=0.00037 Score=74.43 Aligned_cols=85 Identities=13% Similarity=0.098 Sum_probs=61.8
Q ss_pred CCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhch
Q 005761 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (678)
Q Consensus 93 ~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~ 170 (678)
.+|++||+||. ||+||+..|.+.+ ..+||+.....+. + .
T Consensus 120 ~~L~~ILlTH~H~DH~GG~~~L~~~~--ga~V~g~~~~~~~----------i-~-------------------------- 160 (329)
T PLN02398 120 RNLTYILNTHHHYDHTGGNLELKARY--GAKVIGSAVDKDR----------I-P-------------------------- 160 (329)
T ss_pred CCceEEEECCCCchhhCCHHHHHHhc--CCEEEEehHHhhh----------c-c--------------------------
Confidence 46899999998 9999999998854 4899998653220 0 0
Q ss_pred hhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEe-cCCCcccEEEEEeeCCeeEEEecCCC
Q 005761 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSN 249 (678)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~-sGH~lGs~~~~I~~~~~~I~Y~sgD~ 249 (678)
+ --+.+.-++++.+ |+.+++.+. -||..|...|.+. ..+++| |||.
T Consensus 161 -----------~------------------~d~~v~dGd~i~l-gg~~l~vi~tPGHT~GhI~~~~~--~~~vLF-tGDt 207 (329)
T PLN02398 161 -----------G------------------IDIVLKDGDKWMF-AGHEVLVMETPGHTRGHISFYFP--GSGAIF-TGDT 207 (329)
T ss_pred -----------C------------------CcEEeCCCCEEEE-CCeEEEEEeCCCcCCCCEEEEEC--CCCEEE-ECCC
Confidence 0 0134566788888 456666553 4999999999874 356899 9998
No 42
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=97.63 E-value=0.00016 Score=74.66 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=57.3
Q ss_pred CccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhchh
Q 005761 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (678)
Q Consensus 94 ~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~~ 171 (678)
.+++||+||. ||+||+..|.+..+ ..+||++..+..
T Consensus 45 ~l~~IllTH~H~DHigG~~~l~~~~~-~~~V~~~~~~~~----------------------------------------- 82 (251)
T PRK10241 45 QPEAIFLTHHHHDHVGGVKELVEKFP-QIVVYGPQETQD----------------------------------------- 82 (251)
T ss_pred ccCEEEeCCCCchhhccHHHHHHHCC-CCEEEecccccc-----------------------------------------
Confidence 4689999998 99999999988432 478998643210
Q ss_pred hhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEE-ecCCCcccEEEEEeeCCeeEEEecCCC
Q 005761 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDIGACNWIISGAKGNIAYISGSN 249 (678)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~-~sGH~lGs~~~~I~~~~~~I~Y~sgD~ 249 (678)
.+ ..+.+.-++.+.+. +.+++.+ --||..|+..+.. ..++| |||.
T Consensus 83 ---------~~------------------~~~~v~~g~~i~ig-~~~~~vi~tPGHT~ghi~~~~----~~~lF-tGDt 128 (251)
T PRK10241 83 ---------KG------------------TTQVVKDGETAFVL-GHEFSVFATPGHTLGHICYFS----KPYLF-CGDT 128 (251)
T ss_pred ---------cC------------------CceEeCCCCEEEeC-CcEEEEEEcCCCCccceeeec----CCcEE-EcCe
Confidence 00 12345567778884 5566655 3789999999964 25799 9997
No 43
>PRK11539 ComEC family competence protein; Provisional
Probab=97.61 E-value=0.00029 Score=83.97 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=53.1
Q ss_pred EEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCcc
Q 005761 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (678)
Q Consensus 2 kl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 81 (678)
++++|--| .|.|.+++.++.++|+|+|...+. +. .+ ++ . -.|+.
T Consensus 502 ~v~~lDVG----qG~a~li~~~~~~lLiDtG~~~~~---~~---~~------------------~~-----~---i~P~L 545 (755)
T PRK11539 502 RVDMLDVG----HGLAVVIERNGKAILYDTGNAWPT---GD---SA------------------QQ-----V---IIPWL 545 (755)
T ss_pred EEEEEEcc----CceEEEEEECCEEEEEeCCCCCCC---Cc---ch------------------HH-----H---HHHHH
Confidence 57777655 367999999999999999975321 00 00 00 1 13443
Q ss_pred cccccccCCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEec
Q 005761 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYIT 125 (678)
Q Consensus 82 ~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T 125 (678)
+ .... ++|.|+|||. ||+||++.+.+... ..+||.+
T Consensus 546 ~------~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~~~-~~~i~~~ 583 (755)
T PRK11539 546 R------WHGL-TPEGIILSHEHLDHRGGLASLLHAWP-MAWIRSP 583 (755)
T ss_pred H------HcCC-CcCEEEeCCCCcccCCCHHHHHHhCC-cceeecc
Confidence 2 1234 5999999999 99999999987321 4567764
No 44
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=97.47 E-value=0.0016 Score=67.54 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=36.7
Q ss_pred cceEecCCCeEEeCCCeEEEEEecCC-----C--------cccEEEEEeeCCeeEEEecCCCC
Q 005761 201 KVQTLRFGEEACYNGILIIKAFSSGL-----D--------IGACNWIISGAKGNIAYISGSNF 250 (678)
Q Consensus 201 ~i~~v~y~e~v~i~g~l~it~~~sGH-----~--------lGs~~~~I~~~~~~I~Y~sgD~~ 250 (678)
+++.+++++.+++. ++++++..+=| . -+.++|+|+.++.+|.+ .||+.
T Consensus 101 ~~~~~~~~~~~~~~-~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh-~GDt~ 161 (258)
T COG2220 101 RVHELGWGDVIELG-DLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYH-AGDTG 161 (258)
T ss_pred eEEeecCCceEEec-CcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEe-ccCcc
Confidence 68888999999994 66765554443 2 34788999999988888 99984
No 45
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.43 E-value=0.0026 Score=63.87 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=30.2
Q ss_pred CEEEEecCCCCCCCCceEEEEECCEEEEEeCCCCCc
Q 005761 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLS 36 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~ 36 (678)
||+.+++.-.--|-.-|.+++.++.+||+|.|..+.
T Consensus 1 MkV~Pla~eSLGVRSmAt~vet~dv~ILiDpGVsLa 36 (304)
T COG2248 1 MKVIPLASESLGVRSMATFVETKDVGILIDPGVSLA 36 (304)
T ss_pred CceeeccccccchhhhhheeecCCeeEEECCccccC
Confidence 899999875223567899999999999999999865
No 46
>PLN02962 hydroxyacylglutathione hydrolase
Probab=97.27 E-value=0.0012 Score=68.02 Aligned_cols=43 Identities=16% Similarity=0.453 Sum_probs=31.0
Q ss_pred ecCCCeEEeCCCeEEEEE-ecCCCcccEEEEEeeC----CeeEEEecCCC
Q 005761 205 LRFGEEACYNGILIIKAF-SSGLDIGACNWIISGA----KGNIAYISGSN 249 (678)
Q Consensus 205 v~y~e~v~i~g~l~it~~-~sGH~lGs~~~~I~~~----~~~I~Y~sgD~ 249 (678)
++-++.+.+ |+++++.+ --||..|+..|.+..+ ..+++| |||+
T Consensus 104 l~~g~~i~~-g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lf-tGD~ 151 (251)
T PLN02962 104 VEPGDKIYF-GDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAF-TGDA 151 (251)
T ss_pred eCCCCEEEE-CCEEEEEEECCCCCcCcEEEEeccCCCCCccceEE-ECCe
Confidence 556778888 45555433 3499999999987532 457999 9997
No 47
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=97.23 E-value=0.00014 Score=76.05 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=33.9
Q ss_pred CCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHHHHHHH
Q 005761 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQ 133 (678)
Q Consensus 92 ~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~ 133 (678)
.+.+|+||+||. ||+.|+|.|.+ ++..++|+++.|.....
T Consensus 60 ~~~idai~~TH~H~DHi~Gl~~l~~--~~~~~~~~~~~~~~~~~ 101 (269)
T COG1235 60 VSDLDAILLTHEHSDHIQGLDDLRR--AYTLPIYVNPGTLRAST 101 (269)
T ss_pred ccccCeEEEecccHHhhcChHHHHH--HhcCCcccccceecccc
Confidence 368999999999 99999999998 66788888888866543
No 48
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.03 E-value=0.0062 Score=63.97 Aligned_cols=98 Identities=13% Similarity=0.212 Sum_probs=61.7
Q ss_pred CCCCCCccEEEecCC--CCCChhhhhccccCCCcEEEecHHH--HHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhh
Q 005761 89 LWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAA--ARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWE 164 (678)
Q Consensus 89 ~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~~~IY~T~pT--~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~ 164 (678)
.....+||.+++||+ ||+||++-+.+...+ ..+|+-.+. ....+ +++.
T Consensus 85 ~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v-~~~~i~~~~~~~~~~~--~~~~------------------------- 136 (293)
T COG2333 85 SLGVRKLDQLILTHPDADHIGGLDEVLKTIKV-PELWIYAGSDSTSTFV--LRDA------------------------- 136 (293)
T ss_pred HcCCccccEEEeccCCccccCCHHHHHhhCCC-CcEEEeCCCCccchhh--hhhc-------------------------
Confidence 346789999999999 999999999984333 234433332 22111 1110
Q ss_pred hhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEE-ecCCC-----cccEEEEEeeC
Q 005761 165 ELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLD-----IGACNWIISGA 238 (678)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~-~sGH~-----lGs~~~~I~~~ 238 (678)
+ ..+...+=++...+ +++.++.+ |.+.. --||..+++.+
T Consensus 137 -----------------~-----------------~~~~~~~~G~~~~~-~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g 181 (293)
T COG2333 137 -----------------G-----------------IPVRSCKAGDSWQW-GGVVFQVLSPVGGVSDDLNNDSCVLRVTFG 181 (293)
T ss_pred -----------------C-----------------CceeccccCceEEE-CCeEEEEEcCCccccccccCcceEEEEEeC
Confidence 0 02333444556666 35566544 33332 24899999999
Q ss_pred CeeEEEecCCCC
Q 005761 239 KGNIAYISGSNF 250 (678)
Q Consensus 239 ~~~I~Y~sgD~~ 250 (678)
+.++++ |||..
T Consensus 182 ~~s~Ll-TGD~e 192 (293)
T COG2333 182 GNSFLL-TGDLE 192 (293)
T ss_pred CeeEEE-ecCCC
Confidence 999999 99984
No 49
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=96.28 E-value=0.023 Score=50.96 Aligned_cols=84 Identities=10% Similarity=0.135 Sum_probs=61.1
Q ss_pred cCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEE-ccCcchhcccCC---------CCceeeEEEEeecccCCCHhh
Q 005761 423 NWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL-ENEVDAELAVLP---------FKPISMKVLQCSFLSGKKLQK 492 (678)
Q Consensus 423 ~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iil-t~gy~~~~tl~~---------~~~v~~~v~~~~fs~had~~~ 492 (678)
+...-.|=+++-+.++......+++.+.....+.|.| ++||........ ...-+.++..+|+|.|+.+.+
T Consensus 10 d~~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~~~~~~~~~~~VPYSeHSSf~E 89 (110)
T PF07522_consen 10 DPSETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSLQSRGNVRIYRVPYSEHSSFSE 89 (110)
T ss_pred CCCCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCccccccccccccCCCceEEEEecccCCCHHH
Confidence 3455677777777777666677777777777777654 678754332211 122356788999999999999
Q ss_pred HHHHHHhhCCCEEE
Q 005761 493 VQPLLKILQPKLVL 506 (678)
Q Consensus 493 l~~li~~~~P~~vi 506 (678)
|.+|++.++|++|+
T Consensus 90 L~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 90 LKEFVSFLKPKKII 103 (110)
T ss_pred HHHHHHhcCCcEEE
Confidence 99999999999987
No 50
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=96.03 E-value=0.027 Score=57.86 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=37.7
Q ss_pred ecCCCeEEeCCCeEEEEEe-cCCCcccEEEEEe-eCCeeEEEecCCCC
Q 005761 205 LRFGEEACYNGILIIKAFS-SGLDIGACNWIIS-GAKGNIAYISGSNF 250 (678)
Q Consensus 205 v~y~e~v~i~g~l~it~~~-sGH~lGs~~~~I~-~~~~~I~Y~sgD~~ 250 (678)
++.++++.+ |+++|+... =||.-|+..+.+. +.+++.+| |||..
T Consensus 96 ~~~~e~~~~-~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iF-tGDtl 141 (265)
T KOG0813|consen 96 LKDGETVTV-GGLEVRCLHTPGHTAGHICYYVTESTGERAIF-TGDTL 141 (265)
T ss_pred CCCCcEEEE-CCEEEEEEeCCCccCCcEEEEeecCCCCCeEE-eCCce
Confidence 788899999 589999774 5999999999998 67889999 99983
No 51
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.01 E-value=0.05 Score=58.31 Aligned_cols=179 Identities=15% Similarity=0.094 Sum_probs=97.1
Q ss_pred EEEEecCCCC--CCCCceEEEEEC--CEEEEEeCCCCCccccccCCCCCccc----ccccccCcccccccccCCCCcccc
Q 005761 2 KFTCLCQGGG--FNFPPCHILNVS--GFHVLFDCPLDLSALTVFSPLPNDFY----KAICKENSDSQNRQKVEKPLDAND 73 (678)
Q Consensus 2 kl~~Lg~~~~--~~~~sc~lL~~~--~~~iLlDcG~~~~~~~~f~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 73 (678)
.+.+||.+|+ +-..++||++.. +.-+-+|.|.....+.. +.....+. ..+|.+..
T Consensus 2 ~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~-~~~~~~~~~~~~~~~p~~~~---------------- 64 (335)
T PF02112_consen 2 QVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINK-LIQSKYFSTSFDITLPFWGF---------------- 64 (335)
T ss_pred eEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHH-HhhhcccCCcccccCCcccc----------------
Confidence 4677876632 345788999985 57899999987654220 00000000 00000000
Q ss_pred ccccCCcccccccccCCCCCCccEEEecCC--CCCChhhhhccccCC------CcEEEecHHHHHHHHH-hHHHHHHHHH
Q 005761 74 LIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGF------SAKIYITEAAARIGQL-MMEELICMNM 144 (678)
Q Consensus 74 ~~~~~p~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf------~~~IY~T~pT~~l~~~-ll~d~~~~~~ 144 (678)
+..+..+ ...+-...|.+.||||+ ||+.||-.-.- .+ .-+||+.+.|.+-.+- +.
T Consensus 65 --~~~~~~~----~~~~~~~~I~~ylItH~HLDHi~gLvinsp--~~~~~~~~~K~i~gl~~ti~alk~hiF-------- 128 (335)
T PF02112_consen 65 --ASSPYAN----AAYIIRNHIKGYLITHPHLDHIAGLVINSP--EDYLPNSSPKTIYGLPSTIEALKNHIF-------- 128 (335)
T ss_pred --ccChHHH----HHHHHHHhhheEEecCCchhhHHHHHhcCc--ccccccCCCCcEEECHHHHHHHHHccc--------
Confidence 0001100 11122457999999999 99999843322 22 3579999999876542 22
Q ss_pred hhhhhcCCCCCCCcccchhhhhhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeC----------
Q 005761 145 EYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN---------- 214 (678)
Q Consensus 145 ~~~~~~~~~~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~---------- 214 (678)
.|.-|+.+...... ..++ +-++..+++++...+.
T Consensus 129 --------------N~~iWPNl~~~~~~----------------~~~~------~~~~~~l~~~~~~~~~~~~~s~~~~~ 172 (335)
T PF02112_consen 129 --------------NDIIWPNLSDEGEG----------------DYLY------KYRYFDLSPGELIPLNNTTLSVIPNE 172 (335)
T ss_pred --------------CCccCCCCCCcCcc----------------ccee------eeeeeeccccceeecccccccccccc
Confidence 23333332111000 0000 1133344444433322
Q ss_pred --CCeEEEEEecCCCcc------cEEEEEeeCC--eeEEEecCCCC
Q 005761 215 --GILIIKAFSSGLDIG------ACNWIISGAK--GNIAYISGSNF 250 (678)
Q Consensus 215 --g~l~it~~~sGH~lG------s~~~~I~~~~--~~I~Y~sgD~~ 250 (678)
....+++++.-|.-+ |++|.|+... +.|+| -||+.
T Consensus 173 ~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~-fGD~e 217 (335)
T PF02112_consen 173 FPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILF-FGDTE 217 (335)
T ss_pred ccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEE-EeCCC
Confidence 135677799988765 7999998774 89999 89984
No 52
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=89.72 E-value=0.58 Score=37.45 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred CCceEEEEECCEEEEE-eCCCCCc
Q 005761 14 FPPCHILNVSGFHVLF-DCPLDLS 36 (678)
Q Consensus 14 ~~sc~lL~~~~~~iLl-DcG~~~~ 36 (678)
.+||.+|.+++.+.|+ +||-..+
T Consensus 11 ~~p~l~l~~d~~rYlFGn~gEGtQ 34 (63)
T PF13691_consen 11 SGPSLLLFFDSRRYLFGNCGEGTQ 34 (63)
T ss_pred CCCEEEEEeCCceEEeccCCcHHH
Confidence 3499999999999999 9998855
No 53
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=88.17 E-value=0.24 Score=47.83 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=54.4
Q ss_pred CCCCccEEEecCCCCCChhhhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhhhhhch
Q 005761 91 NVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (678)
Q Consensus 91 d~~~ID~IlISH~dH~g~LP~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~ 170 (678)
....++.|+|||.||+.+---+.+ .|.++||+...-++-
T Consensus 52 a~ggv~~IvLTn~dHvR~A~~ya~--~~~a~i~~p~~d~~~--------------------------------------- 90 (199)
T PF14597_consen 52 ALGGVAWIVLTNRDHVRAAEDYAE--QTGAKIYGPAADAAQ--------------------------------------- 90 (199)
T ss_dssp HTT--SEEE-SSGGG-TTHHHHHH--HS--EEEEEGGGCCC---------------------------------------
T ss_pred hcCCceEEEEeCChhHhHHHHHHH--HhCCeeeccHHHHhh---------------------------------------
Confidence 357889999999999999877766 456888887654310
Q ss_pred hhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCCCeEEEEEecCCCcccEEEEEeeCCeeEEEecCCC
Q 005761 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (678)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g~l~it~~~sGH~lGs~~~~I~~~~~~I~Y~sgD~ 249 (678)
+++. -=+.+.-++ ++-+++++...+--|..|...+.++. ++++ |||.
T Consensus 91 ------------------~p~~--------~D~~l~dge--~i~~g~~vi~l~G~ktpGE~ALlled---~vLi-~GDl 137 (199)
T PF14597_consen 91 ------------------FPLA--------CDRWLADGE--EIVPGLWVIHLPGSKTPGELALLLED---RVLI-TGDL 137 (199)
T ss_dssp -------------------SS----------SEEE-TT---BSSTTEEEEEE-SSSSTTEEEEEETT---TEEE-ESSS
T ss_pred ------------------CCCC--------CccccccCC--CccCceEEEEcCCCCCCceeEEEecc---ceEE-ecce
Confidence 1110 012445555 34478999998777999999999985 5888 9996
No 54
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=82.28 E-value=0.84 Score=52.35 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=43.8
Q ss_pred EEEecCCCCCCCCceEEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCCccc
Q 005761 3 FTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYK 82 (678)
Q Consensus 3 l~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 82 (678)
.|+++|| -+-.-|..++|++||+|-|..-. .++.+
T Consensus 40 cYIfpGg----~gdaALFavnGf~iLv~GgserK-----------------------------------------S~fwk 74 (934)
T KOG3592|consen 40 CYIFPGG----RGDAALFAVNGFNILVNGGSERK-----------------------------------------SCFWK 74 (934)
T ss_pred EEECCCC----CCcceeEeecceEEeecCCcccc-----------------------------------------cchHH
Confidence 4666665 24456778899999999887722 12222
Q ss_pred ccccccCCCCCCccEEEecCC--CCCChhhhhcc
Q 005761 83 TVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTR 114 (678)
Q Consensus 83 ~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~ 114 (678)
..-....||+||+||. |.++|+.-|++
T Consensus 75 -----lVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 75 -----LVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred -----HHHHHhhhhhhhhcccccCccccchHHHH
Confidence 2235679999999999 99999887765
No 55
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=81.03 E-value=3.5 Score=46.25 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=62.4
Q ss_pred CEEEEecCCCCCCCCce-EEEEECCEEEEEeCCCCCccccccCCCCCcccccccccCcccccccccCCCCccccccccCC
Q 005761 1 MKFTCLCQGGGFNFPPC-HILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (678)
Q Consensus 1 mkl~~Lg~~~~~~~~sc-~lL~~~~~~iLlDcG~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 79 (678)
+|++|+++ |+|.+.| +++++.|.+ +||.|-..... |.-. .....|
T Consensus 151 Ikf~p~~a--GhVlgacMf~veiagv~-lLyTGd~sree--------------------------Drhl-----~aae~P 196 (668)
T KOG1137|consen 151 IKFWPYHA--GHVLGACMFMVEIAGVR-LLYTGDYSREE--------------------------DRHL-----IAAEMP 196 (668)
T ss_pred eEEEeecc--chhhhheeeeeeeceEE-EEeccccchhh--------------------------cccc-----cchhCC
Confidence 48999996 5888888 788888865 56788652210 0000 000122
Q ss_pred cccccccccCCCCCCccEEEecCC--CCCChhhhhccccCCC-----cEEEecHHHHHHHHHhHHHH
Q 005761 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFS-----AKIYITEAAARIGQLMMEEL 139 (678)
Q Consensus 80 ~~~~~~~~~~~d~~~ID~IlISH~--dH~g~LP~l~~~~gf~-----~~IY~T~pT~~l~~~ll~d~ 139 (678)
-.. ....-....-++-+.|. +|-++||++...+--+ .||||.-.+.++...+.+.+
T Consensus 197 ~~~----~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw 259 (668)
T KOG1137|consen 197 PTG----PDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYW 259 (668)
T ss_pred CCC----ccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHh
Confidence 210 11111234556667776 8999999998754334 49999999988887776654
No 56
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=72.65 E-value=13 Score=38.36 Aligned_cols=109 Identities=18% Similarity=0.218 Sum_probs=70.7
Q ss_pred CCCccEEEecCC--CCCChh----hhhccccCCCcEEEecHHHHHHHHHhHHHHHHHHHhhhhhcCCCCCCCcccchhhh
Q 005761 92 VSFIDVVLISSP--MGMLGL----PFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 165 (678)
Q Consensus 92 ~~~ID~IlISH~--dH~g~L----P~l~~~~gf~~~IY~T~pT~~l~~~ll~d~~~~~~~~~~~~~~~~~~~~~w~~~~~ 165 (678)
...|.--+|||+ ||+.|| |-..+. -+..||+..-|.+..+--.- .|.-|+.
T Consensus 110 ~Q~I~~y~ITH~HLDHIsGlVinSp~~~~q--kkkTI~gl~~tIDvL~khvF---------------------N~lvWP~ 166 (356)
T COG5212 110 RQSINSYFITHAHLDHISGLVINSPDDSKQ--KKKTIYGLADTIDVLRKHVF---------------------NWLVWPN 166 (356)
T ss_pred hhhhhheEeccccccchhceeecCcccccc--CCceEEechhHHHHHHHHhh---------------------cccccCC
Confidence 456888999999 999997 444331 23579999999887553211 2333433
Q ss_pred hhhchhhhhhhcccCCCCCCCCCCchHHHHHHHHhcceEecCCCeEEeCC-CeEEEEEecCCCc--c----cEEEEEeeC
Q 005761 166 LELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG-ILIIKAFSSGLDI--G----ACNWIISGA 238 (678)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~y~e~v~i~g-~l~it~~~sGH~l--G----s~~~~I~~~ 238 (678)
+.. .+. . +-+++.|+..|...+.= .+++.|++.-|.. | |++++++..
T Consensus 167 lt~------------~gs------~--------~~~~qvv~P~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~n 220 (356)
T COG5212 167 LTD------------SGS------G--------TYRMQVVRPAQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSN 220 (356)
T ss_pred ccc------------ccC------c--------eEEEEEeChhHeeeeeeeeecceeeeccCCcccCCcccceEEEEecC
Confidence 321 111 0 12678888887766631 3678899998865 3 478888776
Q ss_pred --CeeEEEecCCCC
Q 005761 239 --KGNIAYISGSNF 250 (678)
Q Consensus 239 --~~~I~Y~sgD~~ 250 (678)
.+-++| -||..
T Consensus 221 kS~~~f~~-fGDve 233 (356)
T COG5212 221 KSNEFFAY-FGDVE 233 (356)
T ss_pred CCcceEEE-ecCCC
Confidence 566788 78873
No 57
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=55.58 E-value=40 Score=34.60 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=32.3
Q ss_pred ceEecCCCeEEeC---CCeEEEEEecCCCcc----------cEEEEEeeCCeeEEEecCCCC
Q 005761 202 VQTLRFGEEACYN---GILIIKAFSSGLDIG----------ACNWIISGAKGNIAYISGSNF 250 (678)
Q Consensus 202 i~~v~y~e~v~i~---g~l~it~~~sGH~lG----------s~~~~I~~~~~~I~Y~sgD~~ 250 (678)
+..+.++++.++. ..++|.+.+|-|.-| -|.|.+..++.+++| .||+.
T Consensus 180 v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~nrfff-aGDTG 240 (343)
T KOG3798|consen 180 VTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGENNRFFF-AGDTG 240 (343)
T ss_pred eeEeeccchhceecCCcEEEEEEcchhhhcccccccCCcceeeeeEEecCCceEEe-cCCCC
Confidence 4455555554443 237888889988654 367888777777777 99984
No 58
>PF11718 CPSF73-100_C: Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; InterPro: IPR021718 This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins. The exact function of this domain is not known.
Probab=53.62 E-value=49 Score=33.37 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=36.9
Q ss_pred eeEEEEEEEEeCCeeeeecCCCCCCC-------CCCCCceEecCCChHHHHHHHHHCCCcee
Q 005761 567 ITRLKGRLFVNHGKHQLLPENEPGGS-------SQTRPFLHWGSPDPENLLAELSKMGINGS 621 (678)
Q Consensus 567 ~a~v~g~l~~~d~~~~l~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~L~~~g~~~~ 621 (678)
...|+|+|+.+|++|+|+.|.+-.+. ..++..+.+... ++-+...|.+.-=..+
T Consensus 2 G~~vsGvLV~~~f~~~lm~p~DL~~yt~L~ts~i~Qrq~i~~~~~-~~ll~~~L~~~fg~ve 62 (216)
T PF11718_consen 2 GQQVSGVLVKKDFDYHLMAPDDLREYTDLSTSTITQRQSIPFNGS-FSLLRWHLEQMFGDVE 62 (216)
T ss_pred CcEEEEEEEecCCcccEEcHHHHhhcCCeeeeEEEEEEEEEeCCC-HHHHHHHHHHhhCceE
Confidence 36899999999999999999885432 123344555444 7778888877653333
No 59
>PRK00685 metal-dependent hydrolase; Provisional
Probab=45.33 E-value=29 Score=34.67 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=37.0
Q ss_pred cCCCHhhHHHHHHhhCCCEEEEecCCccc-----ccccc----cCCceEeecCCCcEEEe
Q 005761 486 SGKKLQKVQPLLKILQPKLVLFPEEWRTH-----VSFSD----VTSFSVSHYSENETIHI 536 (678)
Q Consensus 486 ~had~~~l~~li~~~~P~~vilvHg~~~~-----~~~l~----~~~~~v~~p~~ge~v~i 536 (678)
.|.+..+..++++.++|+.+|++|-+.-. .+.++ +.+.++..++.|+++++
T Consensus 169 ~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 169 FTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEGLGTKVVILKPGESIEL 228 (228)
T ss_pred cccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHhcCCcEEECCCCCEeeC
Confidence 58999999999999999999999975311 12222 12456777778887764
No 60
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=44.08 E-value=43 Score=40.54 Aligned_cols=67 Identities=19% Similarity=0.447 Sum_probs=48.5
Q ss_pred HHHHHHHHHhc------CCeEEEecCChHHHHHHHHHHHHHHHhCCCc-eeEEEEChhHHHHHHHHHhcHHHHhH
Q 005761 318 ICSCAIDSVKA------GGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCK 385 (678)
Q Consensus 318 ~~~~I~~tl~~------GG~VLIP~~a~Gr~qELl~~L~~~~~~~~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~ 385 (678)
+.+++-++|++ -|++|--|--+|+++.++.+|+..+-...++ -.+.+++|+ ..++.+++.+-.||-.
T Consensus 680 Mwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~Pl-Nt~~NW~~EFekWm~~ 753 (1567)
T KOG1015|consen 680 MWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPL-NTALNWMNEFEKWMEG 753 (1567)
T ss_pred HHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcch-HHHHHHHHHHHHhccc
Confidence 44444445444 4788889999999999999999988777663 245555687 3567777777778764
No 61
>PRK03094 hypothetical protein; Provisional
Probab=41.40 E-value=69 Score=26.99 Aligned_cols=70 Identities=20% Similarity=0.138 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHCCCceeEeeccccCcCCCceEEEEeCCCCcEEEEecceeEEEcCCHHHHHHHHHHHHH
Q 005761 604 PDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMEN 673 (678)
Q Consensus 604 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~i~i~~~~~~~I~~~~~~t~I~~~~~~~r~~l~d~~~~ 673 (678)
-.|+++.+.|+++|+..+-.....+...++-++|.=++.+-.=|+-....+-|++..=.+.+.|++.|.+
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve~ 77 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVES 77 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHHH
Confidence 4578999999999999886544322334444444332211111333333344555554555555555543
No 62
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=39.20 E-value=26 Score=33.66 Aligned_cols=68 Identities=19% Similarity=0.097 Sum_probs=46.2
Q ss_pred cCCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEccCcchhcccCCCCceeeEEEEeecccCCCHhhHHHHHHhhCC
Q 005761 423 NWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQP 502 (678)
Q Consensus 423 ~~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt~gy~~~~tl~~~~~v~~~v~~~~fs~had~~~l~~li~~~~P 502 (678)
...+.+|++++.-.. . ++++ .+ -+.+|++.+|..+..-. .-.-..|++..++.+++++++|
T Consensus 126 ~~~~~~i~~~gD~~~---~----~~~~-~~-~D~li~~~~~~~~~~~~----------~~~~~~h~~~~~~~~~~~~~~~ 186 (194)
T PF12706_consen 126 EPDGKKIFYSGDTNY---D----FEEL-KN-IDLLILECGYIDEEEEP----------PARGPGHMTLEEALELAKELKA 186 (194)
T ss_dssp EETTEEEEEETSSSS---C----HHHH-TT-BSEEEEEBCBSSGGHHC----------HHCCTTSBBHHHHHHHHHHHTT
T ss_pred ecCCcceEEeeccch---h----hhhh-cc-CCEEEEeCCCcchhhcc----------cccCCCCCCHHHHHHHHHHcCC
Confidence 456788899876655 1 3444 22 35667766664321100 1123699999999999999999
Q ss_pred CEEEEec
Q 005761 503 KLVLFPE 509 (678)
Q Consensus 503 ~~vilvH 509 (678)
+++|++|
T Consensus 187 ~~~il~H 193 (194)
T PF12706_consen 187 KKVILIH 193 (194)
T ss_dssp SEEEEES
T ss_pred CEEEEEC
Confidence 9999998
No 63
>PRK00055 ribonuclease Z; Reviewed
Probab=30.13 E-value=72 Score=32.59 Aligned_cols=99 Identities=10% Similarity=-0.017 Sum_probs=60.5
Q ss_pred CCCCEEEEecCCCCCCchHHHHHHHHcCCCCCcEEEccCcchhcccCCCCceeeEEEEeecccCCCHhhHHHHHHhhCCC
Q 005761 424 WQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPK 503 (678)
Q Consensus 424 ~~~P~Vv~as~gmL~~G~s~~~l~~~~~d~~N~Iilt~gy~~~~tl~~~~~v~~~v~~~~fs~had~~~l~~li~~~~P~ 503 (678)
.++..|++++.-. .... +..++.+. ..+|++..|..+.. . .-....|+...+..++.++++|+
T Consensus 164 ~~g~~~~y~~Dt~----~~~~-~~~~~~~~-d~li~E~~~~~~~~-~----------~~~~~~H~~~~~a~~~~~~~~~~ 226 (270)
T PRK00055 164 RKGRKVAYCGDTR----PCEA-LVELAKGA-DLLVHEATFGDEDE-E----------LAKEYGHSTARQAAEIAKEAGVK 226 (270)
T ss_pred CCCcEEEEeCCCC----CcHH-HHHHhCCC-CEEEEeccCCcchh-h----------HHhhcCCCCHHHHHHHHHHcCCC
Confidence 4566788887543 2223 33444443 45666655543210 0 01246899999999999999999
Q ss_pred EEEEecCCcccc---ccc-c---cCCceEeecCCCcEEEeCCC
Q 005761 504 LVLFPEEWRTHV---SFS-D---VTSFSVSHYSENETIHIPSL 539 (678)
Q Consensus 504 ~vilvHg~~~~~---~~l-~---~~~~~v~~p~~ge~v~i~~~ 539 (678)
++++.|=..... ..+ + +.-.++..+.-|.+++++..
T Consensus 227 ~~vl~H~~~~~~~~~~~~~~~~~~~~~~v~~a~Dg~~i~l~~~ 269 (270)
T PRK00055 227 RLILTHFSPRYTGDPEELLKEAREIFPNTELAEDLMRVEVPFR 269 (270)
T ss_pred EEEEEeeccccCCCHHHHHHHHHHHcCCcEEccCCcEEEecCC
Confidence 999999754321 111 1 11126777788888888653
No 64
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.69 E-value=2.1e+02 Score=30.16 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=27.0
Q ss_pred CeEEeCCCeEEEEEecCCCcccEEEEEe--eCCeeEEEecCCCCCcCC
Q 005761 209 EEACYNGILIIKAFSSGLDIGACNWIIS--GAKGNIAYISGSNFASGH 254 (678)
Q Consensus 209 e~v~i~g~l~it~~~sGH~lGs~~~~I~--~~~~~I~Y~sgD~~~~~h 254 (678)
+.+++++++.+. -..||..-+-..++. ....+++| +||.+..+|
T Consensus 171 ~~~~l~~~~~V~-~TpGht~~~isvlv~n~~~~GTv~i-tGDLf~~~~ 216 (302)
T KOG4736|consen 171 PYLKLSPNVEVW-KTPGHTQHDISVLVHNVDLYGTVAI-TGDLFPREE 216 (302)
T ss_pred CccccCCceeEe-eCCCCCCcceEEEEEeecccceEEE-EeecccCCc
Confidence 345555444333 346776656666664 35689999 999975444
No 65
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=27.51 E-value=54 Score=32.74 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHh
Q 005761 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMEC 355 (678)
Q Consensus 317 ~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~~~~ 355 (678)
.+++.+.+.|+.||.++|-++..++.+|++..|..++.+
T Consensus 146 ~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 146 LALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK 184 (209)
T ss_pred HHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceE
Confidence 467788899999999999999999999999888766654
No 66
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=25.76 E-value=96 Score=30.39 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=41.1
Q ss_pred CEEEEecCCCCCCchHHHHHHHHcCC-CCCcEEEcc----CcchhcccCCCCceeeEEEEeecccCCCHhhHHHHHHhhC
Q 005761 427 PCIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLEN----EVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQ 501 (678)
Q Consensus 427 P~Vv~as~gmL~~G~s~~~l~~~~~d-~~N~Iilt~----gy~~~~tl~~~~~v~~~v~~~~fs~had~~~l~~li~~~~ 501 (678)
|.|-|=....=+.-.+..+++++... |.-.|++|+ |+....... +-...+.++|++ ...-+.++++..+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~---~~~v~~~~~P~D---~~~~~~rfl~~~~ 95 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL---PDRVDVQYLPLD---FPWAVRRFLDHWR 95 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG----GGG-SEEE---S---SHHHHHHHHHHH-
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC---CCCeEEEEeCcc---CHHHHHHHHHHhC
Confidence 55555443322333457788888865 666777753 444221111 124557778887 4667789999999
Q ss_pred CCEEEEecCC
Q 005761 502 PKLVLFPEEW 511 (678)
Q Consensus 502 P~~vilvHg~ 511 (678)
|+.+|++.+|
T Consensus 96 P~~~i~~EtE 105 (186)
T PF04413_consen 96 PDLLIWVETE 105 (186)
T ss_dssp -SEEEEES--
T ss_pred CCEEEEEccc
Confidence 9999999876
No 67
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=25.13 E-value=1.3e+02 Score=28.34 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHH
Q 005761 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIF 352 (678)
Q Consensus 317 ~~~~~I~~tl~~GG~VLIP~~a~Gr~qELl~~L~~~ 352 (678)
.+|..+.++.++|.+|||-+-.-.+.++|=..|.++
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~ 52 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTF 52 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhcc
Confidence 578999999999999999999999999999988444
No 68
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.72 E-value=2e+02 Score=24.30 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHCCCceeEeeccccCcCCCceEEE
Q 005761 604 PDPENLLAELSKMGINGSVERCMTDAESEDGFTVK 638 (678)
Q Consensus 604 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~i~ 638 (678)
-.|+++.++|+++|+..+-.....+...++-.+|.
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvt 42 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVT 42 (80)
T ss_pred CCchHHHHHHHHCCCEEEecCCccccCCcCEEEEE
Confidence 35789999999999998866543323344344433
No 69
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=20.98 E-value=2.3e+02 Score=34.14 Aligned_cols=73 Identities=15% Similarity=0.293 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHH---hcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-----ceeEEEEChhHHHHHHHHHhcHHH
Q 005761 311 EMEKLAFICSCAIDSV---KAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-----KIPIYIISSVAEELLAYTNTIPEW 382 (678)
Q Consensus 311 e~e~l~~~~~~I~~tl---~~GG~VLIP~~a~Gr~qELl~~L~~~~~~~~l-----~~pIy~~s~~a~~~~~~~~~~~ew 382 (678)
++|-++++++++...+ ..||+++=..--+|++.-.+-.|..+++...- .-|+.+. |.. =+..+++.+..|
T Consensus 243 Q~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~-P~s-Lv~nWkkEF~KW 320 (776)
T KOG0390|consen 243 QREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVA-PSS-LVNNWKKEFGKW 320 (776)
T ss_pred HHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEc-cHH-HHHHHHHHHHHh
Confidence 4556788999999886 67999999999999999999999999998754 6688775 543 467889999999
Q ss_pred HhH
Q 005761 383 LCK 385 (678)
Q Consensus 383 l~~ 385 (678)
+..
T Consensus 321 l~~ 323 (776)
T KOG0390|consen 321 LGN 323 (776)
T ss_pred ccc
Confidence 885
No 70
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=20.23 E-value=2e+02 Score=28.00 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=31.9
Q ss_pred ecCCCeEEeCCCeEEEEE-ecCCCcccEEEEEeeCCeeEEEecCCCC
Q 005761 205 LRFGEEACYNGILIIKAF-SSGLDIGACNWIISGAKGNIAYISGSNF 250 (678)
Q Consensus 205 v~y~e~v~i~g~l~it~~-~sGH~lGs~~~~I~~~~~~I~Y~sgD~~ 250 (678)
++-++.+++ |++.+... .-||.-|+.-|.+. ..+.+| |||..
T Consensus 100 l~~Gd~i~~-G~~~le~ratPGHT~GC~TyV~~--d~~~aF-TGDal 142 (237)
T KOG0814|consen 100 LEDGDIIEI-GGLKLEVRATPGHTNGCVTYVEH--DLRMAF-TGDAL 142 (237)
T ss_pred cCCCCEEEE-ccEEEEEecCCCCCCceEEEEec--Ccceee-eccee
Confidence 567888999 57766655 46999998888765 356899 99973
No 71
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=20.02 E-value=1.1e+02 Score=28.84 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=19.4
Q ss_pred EEEEecCCCCCCCCceEEEEECCEEEEEeCCCC
Q 005761 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLD 34 (678)
Q Consensus 2 kl~~Lg~~~~~~~~sc~lL~~~~~~iLlDcG~~ 34 (678)
||+.||. +|++++.+|.+||+|....
T Consensus 1 ~It~lgh-------a~~~ie~~g~~iliDP~~~ 26 (163)
T PF13483_consen 1 KITWLGH-------ASFLIETGGKRILIDPWFS 26 (163)
T ss_dssp EEEEEET-------TEEEEEETTEEEEES--TT
T ss_pred CEEEEEe-------eEEEEEECCEEEEECCCCC
Confidence 5667764 4999999999999999854
Done!