BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005762
(678 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 257/349 (73%), Gaps = 22/349 (6%)
Query: 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDN 320
LPTP EI LD +VIGQE+AKKVL+VAVYNHYKR+ + D +
Sbjct: 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG----------------DTSNG 46
Query: 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLA 380
VEL KSN+LL+GPTGSGKTLLA+TLAR ++VPF +ADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 47 VELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 106
Query: 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGA 440
+ +++V+ AQ+G+VYID++DKI++K+++ +I+RDVSGEGVQQALLK++EGT+ VP +G
Sbjct: 107 KCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGG 166
Query: 441 RKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQD-SSIGFGAPVRANMRAGVTDAAX 499
RKHP+ + +Q+DT ILFICGGAF L+K IS R + S IGFGA V+A +D A
Sbjct: 167 RKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAK-----SDKAS 221
Query: 500 XXXXXXXXXXXDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFS 559
DLI +GLIPEF+GR P++ +L L+E+ L+++L EPKNAL KQY+ LF+
Sbjct: 222 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFN 281
Query: 560 MNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 608
+ V L F ++AL IAKKA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct: 282 LEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME 330
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 257/349 (73%), Gaps = 22/349 (6%)
Query: 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDN 320
LPTP EI LD +VIGQE+AKKVL+VAVYNHYKR+ + D +
Sbjct: 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG----------------DTSNG 46
Query: 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLA 380
VEL KSN+LL+GPTGSGKTLLA+TLAR ++VPF +ADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 47 VELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 106
Query: 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGA 440
+ +++V+ AQ+G+VYID++DKI++K+++ +I+RDVSGEGVQQALLK++EGT+ VP +G
Sbjct: 107 KCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGG 166
Query: 441 RKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQD-SSIGFGAPVRANMRAGVTDAAX 499
RKHP+ + +Q+DT ILFICGGAF L+K IS R + S IGFGA V+A +D A
Sbjct: 167 RKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAK-----SDKAS 221
Query: 500 XXXXXXXXXXXDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFS 559
DLI +GLIPEF+GR P++ +L L+E+ L+++L EPKNAL KQY+ LF+
Sbjct: 222 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFN 281
Query: 560 MNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 608
+ V L F ++AL IAKKA A+ TGARGLR+I+E+ L + MY++P ++
Sbjct: 282 LEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME 330
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 347 bits (891), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 177/349 (50%), Positives = 249/349 (71%), Gaps = 11/349 (3%)
Query: 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRI-YHANLKKGSGAEPKTAAAVDNDD 319
+P PKE+ LD +VIGQE+AKKV SVAVYNHYKR+ + LKK +
Sbjct: 9 IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLE-- 66
Query: 320 NVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLL 379
VEL KSN+LL+GPTGSGKTL+A+TLA+H+++P I+DAT+LT+AGYVGEDVE+IL +LL
Sbjct: 67 EVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLL 126
Query: 380 AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKG 439
+++NV+ AQ+G+V+IDE+DKI++ +E+ +I+RDVSGEGVQQALLK++EG++VN+P KG
Sbjct: 127 QASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKG 186
Query: 440 ARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAX 499
RKHP G+ IQ+DT DILFIC GAF L + I +R + +GF + M +A
Sbjct: 187 GRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF---TQEKMSKKEQEAI- 242
Query: 500 XXXXXXXXXXXDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFS 559
DL+ YGLIPE +GR P+L +L +++ + +V +L +PKNAL KQY++LF
Sbjct: 243 ----LHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFK 298
Query: 560 MNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 608
M+ V L F E+A++ IA+ A + TGARGLRAI+E + M+++P +K
Sbjct: 299 MDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLK 347
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/351 (33%), Positives = 171/351 (48%), Gaps = 81/351 (23%)
Query: 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVE 322
TP+EI LD+ +IGQ AK+ +++A+ N ++R+ EP E
Sbjct: 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQ--------EPLRH---------E 47
Query: 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382
+ N+L++GPTG GKT +A+ LA+ N PF+ +AT T+ GYVG++V+SI+ L A
Sbjct: 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Query: 383 EFNVEAAQQ-GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGAR 441
++A +Q G+V+IDE+DKI KK E DVS EGVQ+ LL ++EG+ V+
Sbjct: 108 GGAIDAVEQNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVST------ 159
Query: 442 KHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAXXX 501
KH + T ILFI GAF
Sbjct: 160 KHG-----MVKTDHILFIASGAF------------------------------------- 177
Query: 502 XXXXXXXXXDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMN 561
DL IPE GR PI V LTAL+ ++LTEP +L +QYK L +
Sbjct: 178 ---QVARPSDL-----IPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 229
Query: 562 NVKLHFTEKALRVIAKKA-----TAKNTGARGLRAILESILTEAMYEIPDV 607
V + FT A++ IA+ A +N GAR L ++E ++ + + D+
Sbjct: 230 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM 280
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 98/223 (43%), Gaps = 63/223 (28%)
Query: 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSI 449
Q G+V+IDE+DKI K+ ES DVS EGVQ+ LL ++EG V+ KH
Sbjct: 249 QHGIVFIDEIDKICKRGESS--GPDVSREGVQRDLLPLVEGCTVST------KHG----- 295
Query: 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAXXXXXXXXXXX 509
+ T ILFI GAF P
Sbjct: 296 MVKTDHILFIASGAF----------------QIAKP------------------------ 315
Query: 510 XDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569
LIPE GR PI V L ALT ++LTEP ++ QYK L + V + FT+
Sbjct: 316 -----SDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTD 370
Query: 570 KALRVIAKKA-----TAKNTGARGLRAILESILTEAMYEIPDV 607
++ IA+ A + +N GAR L +LE ++ E Y+ D+
Sbjct: 371 SGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDL 413
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 25/151 (16%)
Query: 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVE 322
TP+EI LDK +IGQ+ AK+ +++A+ N ++R+ ++ + E
Sbjct: 5 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQ-----------------LNEELRHE 47
Query: 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382
+ N+L++GPTG GKT +A+ LA+ N PF+ +AT T+ GYVG++V+SI+ L
Sbjct: 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL---- 103
Query: 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISR 413
+AA + MV + ++K +AE L R
Sbjct: 104 ---TDAAVK-MVRVQAIEKNRYRAEELAEER 130
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 98/223 (43%), Gaps = 63/223 (28%)
Query: 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSI 449
Q G+V+IDE+DKI K+ ES DVS EGVQ+ LL ++EG V+ KH
Sbjct: 248 QHGIVFIDEIDKICKRGESS--GPDVSREGVQRDLLPLVEGCTVST------KHG----- 294
Query: 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAXXXXXXXXXXX 509
+ T ILFI GAF P
Sbjct: 295 MVKTDHILFIASGAF----------------QIAKP------------------------ 314
Query: 510 XDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569
LIPE GR PI V L ALT ++LTEP ++ QYK L + V + FT+
Sbjct: 315 -----SDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTD 369
Query: 570 KALRVIAKKA-----TAKNTGARGLRAILESILTEAMYEIPDV 607
++ IA+ A + +N GAR L +LE ++ E Y+ D+
Sbjct: 370 SGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDL 412
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 25/151 (16%)
Query: 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVE 322
TP+EI LDK +IGQ+ AK+ +++A+ N ++R+ ++ + E
Sbjct: 4 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQ-----------------LNEELRHE 46
Query: 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382
+ N+L++GPTG GKT +A+ LA+ N PF+ +AT T+ GYVG++V+SI+ L
Sbjct: 47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL---- 102
Query: 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISR 413
+AA + MV + ++K +AE L R
Sbjct: 103 ---TDAAVK-MVRVQAIEKNRYRAEELAEER 129
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 98/223 (43%), Gaps = 63/223 (28%)
Query: 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSI 449
Q G+V+IDE+DKI K+ ES DVS EGVQ+ LL ++EG V+ KH
Sbjct: 255 QHGIVFIDEIDKICKRGESS--GPDVSREGVQRDLLPLVEGCTVST------KHG----- 301
Query: 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAXXXXXXXXXXX 509
+ T ILFI GAF P
Sbjct: 302 MVKTDHILFIASGAF----------------QIAKP------------------------ 321
Query: 510 XDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569
LIPE GR PI V L ALT ++LTEP ++ QYK L + V + FT+
Sbjct: 322 -----SDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTD 376
Query: 570 KALRVIAKKA-----TAKNTGARGLRAILESILTEAMYEIPDV 607
++ IA+ A + +N GAR L +LE ++ E Y+ D+
Sbjct: 377 SGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDL 419
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 25/151 (16%)
Query: 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVE 322
TP+EI LDK +IGQ+ AK+ +++A+ N ++R+ ++ + E
Sbjct: 11 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQ-----------------LNEELRHE 53
Query: 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382
+ N+L++GPTG GKT +A+ LA+ N PF+ +AT T+ GYVG++V+SI+ L
Sbjct: 54 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL---- 109
Query: 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISR 413
+AA + MV + ++K +AE L R
Sbjct: 110 ---TDAAVK-MVRVQAIEKNRYRAEELAEER 136
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 98/223 (43%), Gaps = 63/223 (28%)
Query: 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSI 449
Q G+V+IDE+DKI KK E DVS EGVQ+ LL ++EG+ V+ KH
Sbjct: 250 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVST------KHG----- 296
Query: 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAXXXXXXXXXXX 509
+ T ILFI GAF P
Sbjct: 297 MVKTDHILFIASGAF----------------QVARP------------------------ 316
Query: 510 XDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569
LIPE GR PI V LTAL+ ++LTEP +L +QYK L + V + FT
Sbjct: 317 -----SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTT 371
Query: 570 KALRVIAKKA-----TAKNTGARGLRAILESILTEAMYEIPDV 607
A++ IA+ A +N GAR L ++E ++ + + D+
Sbjct: 372 DAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM 414
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 31/163 (19%)
Query: 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVE 322
TP+EI LD+ +IGQ AK+ +++A+ N ++R+ EP E
Sbjct: 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQ--------EPLRH---------E 47
Query: 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382
+ N+L++GPTG GKT +A+ LA+ N PF+ +AT T+ GYVG++V+SI+ L A
Sbjct: 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Query: 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425
+V E+ K +AE DV+ E + ALL
Sbjct: 108 --------MKLVRQQEIAKNRARAE------DVAEERILDALL 136
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 95/222 (42%), Gaps = 63/222 (28%)
Query: 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSI 449
Q G+V+IDE+DKI KK E DVS EGVQ+ LL ++EG+ V+ KH
Sbjct: 250 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVST------KHG----- 296
Query: 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAXXXXXXXXXXX 509
+ T ILFI GAF P
Sbjct: 297 XVKTDHILFIASGAF----------------QVARP------------------------ 316
Query: 510 XDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569
LIPE GR PI V LTAL+ ++LTEP +L +QYK L + V + FT
Sbjct: 317 -----SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALXATEGVNIAFTT 371
Query: 570 KALRVIAKKA-----TAKNTGARGLRAILESILTEAMYEIPD 606
A++ IA+ A +N GAR L + E + + + D
Sbjct: 372 DAVKKIAEAAFRVNEKTENIGARRLHTVXERLXDKISFSASD 413
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 31/163 (19%)
Query: 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVE 322
TP+EI LD+ +IGQ AK+ +++A+ N ++R EP E
Sbjct: 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRXQLQ--------EPLRH---------E 47
Query: 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382
+ N+L +GPTG GKT +A+ LA+ N PF+ +AT T+ GYVG++V+SI+ L A
Sbjct: 48 VTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Query: 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425
+V E+ K +AE DV+ E + ALL
Sbjct: 108 --------XKLVRQQEIAKNRARAE------DVAEERILDALL 136
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GKT+LAK +A N F A +LT + YVGE E ++ L A A
Sbjct: 151 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT-SKYVGEG-EKLVRALFAVA----R 204
Query: 388 AAQQGMVYIDEVDKI 402
Q +++ID+VD +
Sbjct: 205 ELQPSIIFIDQVDSL 219
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 9/101 (8%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
VLL GP G+GKTLLAK +A + F+ + A+ + Y+GE I+ ++ A A +
Sbjct: 218 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK-YIGESA-RIIREMFAYA----K 271
Query: 388 AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428
+ ++++DEVD I + S S D +Q+ L+++L
Sbjct: 272 EHEPCIIFMDEVDAIGGRRFSEGTSADRE---IQRTLMELL 309
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN 385
S +LL GP G+GK+ LAK +A N F ++ L + ++GE E ++ +L A A N
Sbjct: 61 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKQLFAMAREN 118
Query: 386 VEAAQQGMVYIDEVDKIT 403
+ +++IDEVD +T
Sbjct: 119 ----KPSIIFIDEVDALT 132
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GKTLLA+ +A + F+ A +LT + YVG D E ++ L A A
Sbjct: 57 LLLFGPPGNGKTLLARAVATECSATFLNISAASLT-SKYVG-DGEKLVRALFAVARH--- 111
Query: 388 AAQQGMVYIDEVD 400
Q +++IDEVD
Sbjct: 112 -MQPSIIFIDEVD 123
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL+GP G+GKTLLA+ +A NVPF + + +VG + L AQA +
Sbjct: 52 ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAARV-RDLFAQA----K 105
Query: 388 AAQQGMVYIDEVDKITK-KAESLNISRDVSGEGVQQALLKM 427
A +V+IDE+D + + + L D + + Q L++M
Sbjct: 106 AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GKTL+ K +A F A++LT + +VGE E ++ L A A
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVA----R 173
Query: 388 AAQQGMVYIDEVDKI 402
Q +++IDE+D +
Sbjct: 174 CQQPAVIFIDEIDSL 188
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 329 LLMGPTGSGKTLLAKTLARHVNVPFV-IADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
LL+GP G GKTLLAK +A VPF+ +A A + G +G L+K
Sbjct: 43 LLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFK-------EAR 95
Query: 388 AAQQGMVYIDEVDKITKK 405
A +VYIDE+D + KK
Sbjct: 96 ARAPCIVYIDEIDAVGKK 113
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 19/106 (17%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
V+L GP G+GKTLLA+ +A H + F+ L Q Y+GE ++ +L A +
Sbjct: 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK-YIGEG-SRMVRELFVMAREHAP 242
Query: 388 AAQQGMVYIDEVDKITKKAESLNISRDVSGEG-----VQQALLKML 428
+ ++++DE+D I S V G G VQ+ +L++L
Sbjct: 243 S----IIFMDEIDSIG--------STRVEGSGGGDSEVQRTMLELL 276
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN 385
S +LL GP G+GK+ LAK +A N F ++ L + ++GE E ++ +L A A N
Sbjct: 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKQLFAMAREN 142
Query: 386 VEAAQQGMVYIDEVDKIT 403
+ +++ID+VD +T
Sbjct: 143 ----KPSIIFIDQVDALT 156
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN 385
S +LL GP G+GK+ LAK +A N F ++ L + ++GE E ++ +L A A N
Sbjct: 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKQLFAMAREN 109
Query: 386 VEAAQQGMVYIDEVDKIT 403
+ +++ID+VD +T
Sbjct: 110 ----KPSIIFIDQVDALT 123
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN 385
S +LL GP G+GK+ LAK +A N F ++ L + ++GE E ++ +L A A N
Sbjct: 70 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKQLFAMAREN 127
Query: 386 VEAAQQGMVYIDEVDKIT 403
+ +++ID+VD +T
Sbjct: 128 ----KPSIIFIDQVDALT 141
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV 386
VL++GP G+GKTLLAK +A VPF + + +VG S + + QA
Sbjct: 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGA-SRVRDMFEQA---- 100
Query: 387 EAAQQGMVYIDEVDKITK-KAESLNISRDVSGEGVQQALLKM 427
+ A +++IDE+D + + + L D + + Q L++M
Sbjct: 101 KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 142
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL+GP G+G TLLA+ +A NVPF + + +VG + L AQA +
Sbjct: 52 ILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVEL-FVGVGAARV-RDLFAQA----K 105
Query: 388 AAQQGMVYIDEVDKITK-KAESLNISRDVSGEGVQQALLKM 427
A +V+IDE+D + + + L D + + Q L++M
Sbjct: 106 AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GKTL+A+ +A F + + + + GE ES L K +AE N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEAEKNAP 298
Query: 388 AAQQGMVYIDEVDKITKKAE 407
A +++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 22/126 (17%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV- 386
VL GP G GKTLLAK +A QA ++ +L ++E NV
Sbjct: 514 VLFYGPPGCGKTLLAKAIANE-------------CQANFISIKGPELLTMWFGESEANVR 560
Query: 387 ---EAAQQG---MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG--TIVNVPEK 438
+ A+Q +++ DE+D I K + + V +L ++G T NV
Sbjct: 561 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620
Query: 439 GARKHP 444
GA P
Sbjct: 621 GATNRP 626
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GKTL+A+ +A F + + + + GE ES L K +AE N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEAEKNAP 298
Query: 388 AAQQGMVYIDEVDKITKKAE 407
A +++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 22/126 (17%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV- 386
VL GP G GKTLLAK +A QA ++ +L ++E NV
Sbjct: 514 VLFYGPPGCGKTLLAKAIANE-------------CQANFISIKGPELLTMWFGESEANVR 560
Query: 387 ---EAAQQG---MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG--TIVNVPEK 438
+ A+Q +++ DE+D I K + + V +L ++G T NV
Sbjct: 561 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620
Query: 439 GARKHP 444
GA P
Sbjct: 621 GATNRP 626
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESI--LYKLLAQAEFN 385
+LL GP G+GKTLLAK +A N F+ + L + ++GE + ++KL +
Sbjct: 54 ILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIGEGASLVKDIFKLAKE---- 108
Query: 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428
+++IDE+D I K D VQ+ L+++L
Sbjct: 109 ---KAPSIIFIDEIDAIAAKRTDALTGGDRE---VQRTLMQLL 145
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GKTL+A+ +A F + + + + GE ES L K +AE N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEAEKNAP 298
Query: 388 AAQQGMVYIDEVDKITKKAE 407
A +++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GKTL+A+ +A F + + + + GE ES L K +AE N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEAEKNAP 298
Query: 388 AAQQGMVYIDEVDKITKKAE 407
A +++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GKTL+A+ +A F + + + + GE ES L K +AE N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEAEKNAP 298
Query: 388 AAQQGMVYIDEVDKITKKAE 407
A +++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GKTL+A+ +A F + + + + GE ES L K +AE N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEAEKNAP 298
Query: 388 AAQQGMVYIDEVDKITKKAE 407
A +++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV 386
VLL+GP G GKT LA+ +A VPF+ A + + +VG + L A+ +
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARV-RDLFETAKRHA 132
Query: 387 EAAQQGMVYIDEVDKITKKAES-LNISRDVSGEGVQQALLKM 427
+V+IDE+D + +K S + D + + Q L++M
Sbjct: 133 PC----IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 13/102 (12%)
Query: 329 LLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA 388
L+ GP G+GKTLLA+ A N F+ A L Q Y+GE KL+ A +
Sbjct: 219 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIGEGA-----KLVRDAFALAKE 272
Query: 389 AQQGMVYIDEVDKI-TKKAESLNISRDVSGE-GVQQALLKML 428
+++IDE+D I TK+ +S + SG+ VQ+ +L++L
Sbjct: 273 KAPTIIFIDELDAIGTKRFDS-----EKSGDREVQRTMLELL 309
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ--AGYVGEDVESILYKLLAQAEFN 385
VLL+GP G+GKTLLAK +A +VPF ++ + G V + QA
Sbjct: 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQA--- 103
Query: 386 VEAAQQGMVYIDEVDKITK 404
+++IDE+D I K
Sbjct: 104 -----PSIIFIDEIDAIGK 117
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV 386
VLL+GP G GKT LA+ +A VPF+ A + + +VG + L A+ +
Sbjct: 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARV-RDLFETAKRHA 108
Query: 387 EAAQQGMVYIDEVDKITKKAES-LNISRDVSGEGVQQALLKM 427
+V+IDE+D + +K S + D + + Q L++M
Sbjct: 109 PC----IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 146
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV 386
VLL+GP G GKT LA+ +A VPF+ A + + +VG + L A+ +
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARV-RDLFETAKRHA 132
Query: 387 EAAQQGMVYIDEVDKITKKAES-LNISRDVSGEGVQQALLKM 427
+V+IDE+D + +K S + D + + Q L++M
Sbjct: 133 PC----IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
VLL+GP G GKT LA+ +A VPF+ A + + +VG + L A+ +
Sbjct: 67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARV-RDLFETAKRHAP 124
Query: 388 AAQQGMVYIDEVDKITKKAES-LNISRDVSGEGVQQALLKM 427
+V+IDE+D + +K S + D + + Q L++M
Sbjct: 125 C----IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 24/158 (15%)
Query: 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV 386
+++L GP G+GKT LA+ +AR+ N AD ++ V V+ I + + +A N
Sbjct: 52 SMILWGPPGTGKTTLAEVIARYAN-----ADVERISA---VTSGVKEIR-EAIERARQNR 102
Query: 387 EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPR 445
A ++ ++++DEV + K Q A L +E GTI +
Sbjct: 103 NAGRRTILFVDEVHRFNKSQ--------------QDAFLPHIEDGTITFIGATTENPSFE 148
Query: 446 GDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFG 483
+S + + + + D+E+ +++ +D + G+G
Sbjct: 149 LNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYG 186
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GKTL A+ +A + F+ + L Q YVGE ++ +L A
Sbjct: 246 ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK-YVGEGAR-MVRELFEMA----R 299
Query: 388 AAQQGMVYIDEVDKI 402
+ +++ DE+D +
Sbjct: 300 TKKACIIFFDEIDAV 314
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GK+ LAK +A N + +++ + ++GE E ++ L A N
Sbjct: 48 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES-EKLVKNLFQLAREN-- 104
Query: 388 AAQQGMVYIDEVDKI 402
+ +++IDE+D +
Sbjct: 105 --KPSIIFIDEIDSL 117
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN 385
+ VLL GP G GKTLLAK +A + F+ L YVGE E + ++ +A+ +
Sbjct: 45 AGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVGES-ERAVRQVFQRAKNS 102
Query: 386 VEAAQQGMVYIDEVDKITKK 405
+++ DEVD + +
Sbjct: 103 APC----VIFFDEVDALCPR 118
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
+LL GP G+GK+ LAK +A N + +++ + ++GE E ++ L A N
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES-EKLVKNLFQLAREN-- 226
Query: 388 AAQQGMVYIDEVDKI 402
+ +++IDE+D +
Sbjct: 227 --KPSIIFIDEIDSL 239
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAG 365
EK N+ L+GP G+GK+ + + LA+ +N+ F +D + G
Sbjct: 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG 44
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
VLL GP G+GKT+L K +A F+ + + Y+GE ++ + A N
Sbjct: 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK-YLGEG-PRMVRDVFRLARENAP 266
Query: 388 AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430
+ +++IDEVD I K D + + LL ++G
Sbjct: 267 S----IIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN 385
++LL GP G GKT LA +A + V + + + G D+ +IL L + +
Sbjct: 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG----DLAAILANSLEEGD-- 92
Query: 386 VEAAQQGMVYIDEVDKITKKAES 408
+++IDE+ +++++AE
Sbjct: 93 -------ILFIDEIHRLSRQAEE 108
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE 387
V+L G G+GKTLLAK +A + F+ + L Q Y+G D + ++ A N
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK-YLG-DGPRLCRQIFKVAGENAP 276
Query: 388 AAQQGMVYIDEVDKI-TKKAESLNISRDVSGE-GVQQALLKML 428
+ +V+IDE+D I TK+ +S + GE +Q+ +L++L
Sbjct: 277 S----IVFIDEIDAIGTKRYDS-----NSGGEREIQRTMLELL 310
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN 385
++LL GP G GKT LA +A + V + + + G D+ +IL L + +
Sbjct: 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG----DLAAILANSLEEGD-- 92
Query: 386 VEAAQQGMVYIDEVDKITKKAES 408
+++IDE+ +++++AE
Sbjct: 93 -------ILFIDEIHRLSRQAEE 108
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 22/126 (17%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV- 386
VL GP G GKTLLAK +A QA ++ +L ++E NV
Sbjct: 52 VLFYGPPGCGKTLLAKAIANE-------------CQANFISIKGPELLTMWFGESEANVR 98
Query: 387 ---EAAQQG---MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG--TIVNVPEK 438
+ A+Q +++ DE+D I K + + V +L ++G T NV
Sbjct: 99 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 158
Query: 439 GARKHP 444
GA P
Sbjct: 159 GATNRP 164
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN 385
++LL GP G GKT LA +A + V + + + G D+ +IL L + +
Sbjct: 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG----DLAAILANSLEEGD-- 92
Query: 386 VEAAQQGMVYIDEVDKITKKAES 408
+++IDE+ +++++AE
Sbjct: 93 -------ILFIDEIHRLSRQAEE 108
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 41/141 (29%)
Query: 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNV 328
K LD+F IGQE KK LS+A+ A +G + +V
Sbjct: 22 KSLDEF-IGQENVKKKLSLAL--------EAAKMRGEVLD------------------HV 54
Query: 329 LLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA 388
LL GP G GKT LA +A + + L + G D+ +IL L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL---------- 100
Query: 389 AQQGMVYIDEVDKITKKAESL 409
+ +++IDE+ ++ K E L
Sbjct: 101 ERGDVLFIDEIHRLNKAVEEL 121
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 41/141 (29%)
Query: 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNV 328
K LD+F IGQE KK LS+A+ A +G + +V
Sbjct: 22 KSLDEF-IGQENVKKKLSLAL--------EAAKMRGEVLD------------------HV 54
Query: 329 LLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA 388
LL GP G GKT LA +A + + L + G D+ +IL L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL---------- 100
Query: 389 AQQGMVYIDEVDKITKKAESL 409
+ +++IDE+ ++ K E L
Sbjct: 101 ERGDVLFIDEIHRLNKAVEEL 121
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 41/141 (29%)
Query: 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNV 328
K LD+F IGQE KK LS+A+ A +G + +V
Sbjct: 22 KSLDEF-IGQENVKKKLSLAL--------EAAKMRGEVLD------------------HV 54
Query: 329 LLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA 388
LL GP G GKT LA +A + + L + G D+ +IL L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL---------- 100
Query: 389 AQQGMVYIDEVDKITKKAESL 409
+ +++IDE+ ++ K E L
Sbjct: 101 ERGDVLFIDEIHRLNKAVEEL 121
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 41/141 (29%)
Query: 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNV 328
K LD+F IGQE KK LS+A+ A +G + +V
Sbjct: 22 KSLDEF-IGQENVKKKLSLAL--------EAAKMRGEVLD------------------HV 54
Query: 329 LLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA 388
LL GP G GKT LA +A + + L + G D+ +IL L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL---------- 100
Query: 389 AQQGMVYIDEVDKITKKAESL 409
+ +++IDE+ ++ K E L
Sbjct: 101 ERGDVLFIDEIHRLNKAVEEL 121
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT--------LTQAGYVGEDVES 373
K+N LL+G +G GKT +A+ LA + +VP V+AD T L Y G D E
Sbjct: 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG-DFEK 265
Query: 374 ILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402
LL Q E + + +++IDE+ I
Sbjct: 266 RFKALLKQLEQDTNS----ILFIDEIHTI 290
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 41/141 (29%)
Query: 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNV 328
K LD+F IGQE KK LS+A+ A +G + +V
Sbjct: 22 KSLDEF-IGQENVKKKLSLAL--------EAAKMRGEVLD------------------HV 54
Query: 329 LLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA 388
LL GP G GKT LA +A + + L + G D+ +IL L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL---------- 100
Query: 389 AQQGMVYIDEVDKITKKAESL 409
+ +++IDE+ ++ K E L
Sbjct: 101 ERGDVLFIDEIHRLNKAVEEL 121
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357
+ L G G+GKT L K AR +NVPF+ D
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 41/141 (29%)
Query: 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNV 328
K LD+F IGQE KK LS+A+ A +G + +V
Sbjct: 22 KSLDEF-IGQENVKKKLSLAL--------EAAKMRGEVLD------------------HV 54
Query: 329 LLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA 388
LL GP G G+T LA +A + + L + G D+ +IL L
Sbjct: 55 LLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQG----DMAAILTSL---------- 100
Query: 389 AQQGMVYIDEVDKITKKAESL 409
+ +++IDE+ ++ K E L
Sbjct: 101 ERGDVLFIDEIHRLNKAVEEL 121
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354
+VLL GP SGKT LA +A N PF+
Sbjct: 65 SVLLEGPPHSGKTALAAKIAEESNFPFI 92
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354
+VLL GP SGKT LA +A N PF+
Sbjct: 66 SVLLEGPPHSGKTALAAKIAEESNFPFI 93
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP-FVIADATTLTQAGY 366
K + L+G TG+GKT L + VN P VIA TL Y
Sbjct: 38 KKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLY 80
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP-FVIADATTLTQAGY 366
K + L+G TG+GKT L + VN P VIA TL Y
Sbjct: 32 KKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLY 74
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDV 371
+ LMGPT SGKT LA L + + V + D+ + Y G D+
Sbjct: 13 IFLMGPTASGKTALAIELRKILPVELISVDSALI----YKGMDI 52
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 25/113 (22%)
Query: 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILY-------- 376
K+ VL+ G +G+GK ++A+ + R+ D L A E ES L+
Sbjct: 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVD---LNCASIPQELAESELFGHEKGAFT 208
Query: 377 KLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429
L + + +E A QG +++DEV ++ ++ VQ LL++LE
Sbjct: 209 GALTRKKGKLELADQGTLFLDEVGELDQR--------------VQAKLLRVLE 247
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 327 NVLLMGPTGSGKTLLAKTLA 346
+ L +GPTG GKT LAKTLA
Sbjct: 590 SFLFLGPTGVGKTELAKTLA 609
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 327 NVLLMGPTGSGKTLLAKTLA 346
+ L +GPTG GKT LAKTLA
Sbjct: 49 SFLFLGPTGVGKTELAKTLA 68
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 327 NVLLMGPTGSGKTLLAKTLA 346
+ L +GPTG GKT LAKTLA
Sbjct: 46 SFLFLGPTGVGKTELAKTLA 65
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVG 368
++++GPT SGKT L+ +A+ N + D+ + Q +G
Sbjct: 10 IVIVGPTASGKTELSIEVAKKFNGEIISGDSXQVYQGXDIG 50
>pdb|2DPW|A Chain A, Hpothetical Transferase Structure From Thermus
Thermophilus
Length = 232
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%)
Query: 512 LIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA 571
L A GL P +VG P LV ALT +L + AL R+ H TE+A
Sbjct: 42 LYAAGLSPVYVGENPGLVPAPALTLPDRGGLLENLEQALEHVEGRVLVATGDIPHLTEEA 101
Query: 572 LRVIAKKA 579
+R + KA
Sbjct: 102 VRFVLDKA 109
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 322 ELEKSNVL-LMGPTGSGKTLLAKTLARHVNVPF---VIADATTLTQAGYVGEDVESILYK 377
E++K V+ ++GP G GKT K LA V P + D T + Y+ D E +Y+
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLA-GVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 378 LLAQAE 383
LL++ +
Sbjct: 367 LLSKID 372
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 291 NHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350
H +I + L K G E K NV +LL+G GSGKT A LAR++
Sbjct: 71 EHIIKIVYEELVKLLGEEAKKLELNPKKQNV------ILLVGIQGSGKTTTAAKLARYIQ 124
Query: 351 ----VPFVIADATTLTQAGY 366
P +IA A T A Y
Sbjct: 125 KRGLKPALIA-ADTYRPAAY 143
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 291 NHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350
H +I + L K G E K NV +LL+G GSGKT A LAR++
Sbjct: 71 EHIIKIVYEELVKLLGEEAKKLELNPKKQNV------ILLVGIQGSGKTTTAAKLARYIQ 124
Query: 351 ----VPFVIADATTLTQAGY 366
P +IA A T A Y
Sbjct: 125 KRGLKPALIA-ADTYRPAAY 143
>pdb|2H64|A Chain A, Crystal Structure Of A Ternary Ligand-Receptor Complex Of
Bmp-2
Length = 114
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405
H PF +AD T V V S+ K+ E + M+Y+DE +K+ KK
Sbjct: 44 HGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVKK 101
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358
+V++MG +GSGKT +A +A + F ADA
Sbjct: 31 HVVVMGVSGSGKTTIAHGVADETGLEFAEADA 62
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 322 ELEKSNVL-LMGPTGSGKTLLAKTLARHVNVPF---VIADATTLTQAGYVGEDVESILYK 377
E+ K V+ ++GP G GKT K LA V P V D T + Y+ + E +Y+
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLA-GVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 436
Query: 378 LLAQAE 383
LL++ +
Sbjct: 437 LLSKID 442
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 322 ELEKSNVL-LMGPTGSGKTLLAKTLARHVNVPF---VIADATTLTQAGYVGEDVESILYK 377
E+ K V+ ++GP G GKT K LA V P V D T + Y+ + E +Y+
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLA-GVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 422
Query: 378 LLAQAE 383
LL++ +
Sbjct: 423 LLSKID 428
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESIL 375
L ++ L+G GSGKT + K +AR + F D TL + G V I
Sbjct: 46 LNGRSMYLVGMMGSGKTTVGKIMARSLGYTFF--DCDTLIEQAMKGTSVAEIF 96
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDV 371
+ L GPT SGKT LA L + + V + D+ + Y G D+
Sbjct: 13 IFLXGPTASGKTALAIELRKILPVELISVDSALI----YKGXDI 52
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 323 LEKSNVLLMGPTGSGKTLLAK 343
LE + +LL PTGSGKTL+A+
Sbjct: 44 LEGNRLLLTSPTGSGKTLIAE 64
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 321 VELEKSN------VLLMGPTGSGKTLLAKTLARHV--NVPF 353
VEL KS VLL GP G+GKT LA +A+ + VPF
Sbjct: 67 VELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKVPF 107
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 321 VELEKSN------VLLMGPTGSGKTLLAKTLARHV--NVPF 353
VEL KS VLL GP G+GKT LA +A+ + VPF
Sbjct: 53 VELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPF 93
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 320 NVELEKSNVLLMGPTGSGKTLLAKTLA 346
N+E+ V+++GP GSGKT L + ++
Sbjct: 25 NLEVNGEKVIILGPNGSGKTTLLRAIS 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,459,198
Number of Sequences: 62578
Number of extensions: 599133
Number of successful extensions: 1812
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1693
Number of HSP's gapped (non-prelim): 121
length of query: 678
length of database: 14,973,337
effective HSP length: 105
effective length of query: 573
effective length of database: 8,402,647
effective search space: 4814716731
effective search space used: 4814716731
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)