Query 005762
Match_columns 678
No_of_seqs 439 out of 3659
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 13:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 9.5E-81 2E-85 660.1 33.3 390 260-654 132-557 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 8.2E-74 1.8E-78 589.4 28.3 348 259-631 47-394 (408)
3 PRK05342 clpX ATP-dependent pr 100.0 7.3E-54 1.6E-58 470.3 32.5 346 261-630 59-404 (412)
4 TIGR00382 clpX endopeptidase C 100.0 1.1E-53 2.4E-58 467.3 32.6 346 261-630 65-410 (413)
5 TIGR00390 hslU ATP-dependent p 100.0 1E-46 2.3E-51 408.2 25.1 285 262-626 1-425 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 3E-46 6.5E-51 404.8 25.6 285 262-626 4-427 (443)
7 COG1220 HslU ATP-dependent pro 100.0 4.7E-41 1E-45 349.1 22.0 287 261-627 3-429 (444)
8 COG0542 clpA ATP-binding subun 100.0 1.9E-34 4.2E-39 331.4 19.2 294 249-622 463-775 (786)
9 PRK11034 clpA ATP-dependent Cl 100.0 7.5E-31 1.6E-35 306.7 21.5 275 249-605 430-720 (758)
10 CHL00095 clpC Clp protease ATP 100.0 1.9E-29 4.1E-34 299.6 25.6 287 249-605 481-786 (821)
11 TIGR02639 ClpA ATP-dependent C 100.0 3.1E-29 6.6E-34 294.7 21.8 276 249-605 426-716 (731)
12 TIGR03345 VI_ClpV1 type VI sec 100.0 4.8E-28 1E-32 287.4 22.6 278 249-604 538-834 (852)
13 TIGR03346 chaperone_ClpB ATP-d 99.9 3.6E-26 7.8E-31 272.6 23.2 275 249-605 537-830 (852)
14 PRK10865 protein disaggregatio 99.9 3.1E-26 6.7E-31 272.6 22.0 275 249-605 540-833 (857)
15 COG0466 Lon ATP-dependent Lon 99.9 1.9E-24 4E-29 243.6 19.1 256 251-607 298-564 (782)
16 KOG1051 Chaperone HSP104 and r 99.9 1.9E-23 4.1E-28 243.7 20.3 287 247-605 532-838 (898)
17 TIGR00763 lon ATP-dependent pr 99.9 4.5E-23 9.9E-28 244.0 20.3 257 249-606 293-560 (775)
18 KOG2004 Mitochondrial ATP-depe 99.9 3.1E-23 6.7E-28 232.4 17.5 246 261-607 399-652 (906)
19 PRK10787 DNA-binding ATP-depen 99.9 1.6E-22 3.5E-27 238.2 24.0 260 260-625 309-576 (784)
20 TIGR02881 spore_V_K stage V sp 99.9 7.1E-22 1.5E-26 205.5 19.8 231 268-608 2-246 (261)
21 TIGR02880 cbbX_cfxQ probable R 99.9 2.8E-22 6E-27 211.5 16.7 238 261-607 10-260 (284)
22 CHL00181 cbbX CbbX; Provisiona 99.9 3.7E-22 7.9E-27 210.8 17.6 237 262-607 12-261 (287)
23 PF07724 AAA_2: AAA domain (Cd 99.9 5.2E-23 1.1E-27 201.7 8.4 166 324-528 2-171 (171)
24 COG1223 Predicted ATPase (AAA+ 99.9 2.9E-22 6.3E-27 203.3 13.7 216 273-603 121-338 (368)
25 KOG0738 AAA+-type ATPase [Post 99.9 1.3E-20 2.8E-25 200.1 22.7 131 275-432 214-344 (491)
26 KOG0730 AAA+-type ATPase [Post 99.9 3.4E-21 7.4E-26 215.7 16.0 219 275-605 436-657 (693)
27 PF05496 RuvB_N: Holliday junc 99.9 1.3E-20 2.8E-25 190.4 18.4 189 270-579 22-211 (233)
28 COG1222 RPT1 ATP-dependent 26S 99.9 2.4E-21 5.2E-26 204.5 13.6 177 274-545 152-333 (406)
29 KOG0736 Peroxisome assembly fa 99.8 4E-20 8.7E-25 209.0 18.3 223 275-605 674-900 (953)
30 COG2256 MGS1 ATPase related to 99.8 6.6E-20 1.4E-24 196.3 17.2 168 326-597 49-217 (436)
31 KOG0734 AAA+-type ATPase conta 99.8 4.1E-20 8.9E-25 201.9 15.7 231 262-603 293-524 (752)
32 KOG0731 AAA+-type ATPase conta 99.8 6.2E-20 1.3E-24 210.8 16.4 181 274-546 312-494 (774)
33 KOG0733 Nuclear AAA ATPase (VC 99.8 8.9E-20 1.9E-24 202.0 15.9 221 275-601 513-734 (802)
34 COG2204 AtoC Response regulato 99.8 2E-19 4.2E-24 198.9 15.4 219 305-599 144-373 (464)
35 COG3604 FhlA Transcriptional r 99.8 1.5E-19 3.4E-24 197.6 12.2 223 305-605 226-460 (550)
36 COG3829 RocR Transcriptional r 99.8 2.4E-19 5.2E-24 198.4 12.8 217 305-598 248-477 (560)
37 KOG0739 AAA+-type ATPase [Post 99.8 8.5E-20 1.8E-24 188.3 8.6 154 275-475 135-290 (439)
38 CHL00195 ycf46 Ycf46; Provisio 99.8 1.4E-17 2.9E-22 187.3 20.6 217 274-603 229-447 (489)
39 KOG2028 ATPase related to the 99.8 3.2E-18 7E-23 180.5 14.1 214 326-647 163-381 (554)
40 KOG0733 Nuclear AAA ATPase (VC 99.8 4.5E-18 9.8E-23 188.6 15.5 180 275-545 192-372 (802)
41 TIGR01241 FtsH_fam ATP-depende 99.8 1.9E-17 4E-22 187.4 19.7 182 270-545 53-236 (495)
42 COG2255 RuvB Holliday junction 99.8 8.2E-18 1.8E-22 173.4 14.6 189 270-579 24-213 (332)
43 COG0464 SpoVK ATPases of the A 99.8 2.9E-17 6.3E-22 185.6 19.6 220 275-604 244-466 (494)
44 KOG0728 26S proteasome regulat 99.7 9E-18 2E-22 169.9 12.9 230 274-625 148-382 (404)
45 TIGR01243 CDC48 AAA family ATP 99.7 3.2E-17 7E-22 193.5 19.7 221 275-605 455-677 (733)
46 PTZ00454 26S protease regulato 99.7 6.1E-17 1.3E-21 178.2 18.8 221 275-603 147-369 (398)
47 TIGR02974 phageshock_pspF psp 99.7 3.8E-17 8.3E-22 175.9 16.7 202 322-600 19-233 (329)
48 PRK03992 proteasome-activating 99.7 8.1E-17 1.7E-21 177.1 18.7 222 274-603 132-355 (389)
49 CHL00176 ftsH cell division pr 99.7 8.4E-17 1.8E-21 186.1 17.8 216 275-599 185-402 (638)
50 TIGR03689 pup_AAA proteasome A 99.7 1.4E-16 3.1E-21 179.2 19.0 182 275-546 184-377 (512)
51 COG0465 HflB ATP-dependent Zn 99.7 9.3E-17 2E-21 181.9 16.0 133 274-431 151-283 (596)
52 TIGR01817 nifA Nif-specific re 99.7 2.3E-16 4.9E-21 180.1 16.9 218 305-599 199-427 (534)
53 PTZ00361 26 proteosome regulat 99.7 2.8E-16 6E-21 174.5 16.6 220 275-603 185-407 (438)
54 COG1221 PspF Transcriptional r 99.7 1.5E-16 3.2E-21 173.5 13.8 219 307-603 83-312 (403)
55 PLN00020 ribulose bisphosphate 99.7 2.1E-16 4.6E-21 169.6 14.5 178 324-579 147-328 (413)
56 PRK11608 pspF phage shock prot 99.7 1.5E-16 3.3E-21 171.0 13.5 221 275-599 8-239 (326)
57 KOG0735 AAA+-type ATPase [Post 99.7 5.9E-16 1.3E-20 174.2 15.7 219 275-605 669-890 (952)
58 PRK05022 anaerobic nitric oxid 99.7 8.8E-16 1.9E-20 174.4 15.8 221 305-601 190-421 (509)
59 TIGR01242 26Sp45 26S proteasom 99.7 1.5E-15 3.2E-20 165.5 16.5 220 273-603 122-346 (364)
60 KOG0727 26S proteasome regulat 99.7 6.9E-16 1.5E-20 156.5 12.3 145 275-465 157-304 (408)
61 PRK11388 DNA-binding transcrip 99.7 1.5E-15 3.3E-20 176.8 16.9 213 306-598 329-552 (638)
62 PRK13342 recombination factor 99.6 2.8E-15 6E-20 166.1 17.4 166 326-598 37-202 (413)
63 PRK14956 DNA polymerase III su 99.6 2.8E-15 6E-20 167.1 17.4 184 275-597 20-227 (484)
64 PRK00080 ruvB Holliday junctio 99.6 5.6E-15 1.2E-19 158.8 18.4 204 275-601 27-231 (328)
65 TIGR00635 ruvB Holliday juncti 99.6 5.2E-15 1.1E-19 156.7 17.6 204 271-597 3-206 (305)
66 PRK07003 DNA polymerase III su 99.6 2.8E-15 6E-20 172.9 16.5 184 275-597 18-225 (830)
67 PRK15424 propionate catabolism 99.6 3.6E-15 7.8E-20 169.5 16.7 215 305-598 222-463 (538)
68 TIGR02329 propionate_PrpR prop 99.6 3.9E-15 8.5E-20 169.1 16.8 216 305-599 215-449 (526)
69 PRK10820 DNA-binding transcrip 99.6 5.2E-15 1.1E-19 168.5 17.7 204 320-599 222-436 (520)
70 TIGR02902 spore_lonB ATP-depen 99.6 2.4E-15 5.2E-20 171.5 15.0 216 275-601 67-313 (531)
71 KOG0737 AAA+-type ATPase [Post 99.6 7.8E-15 1.7E-19 156.2 17.3 238 261-607 81-318 (386)
72 TIGR02639 ClpA ATP-dependent C 99.6 2.3E-15 4.9E-20 177.8 14.6 192 269-579 179-381 (731)
73 PRK10733 hflB ATP-dependent me 99.6 1.3E-14 2.8E-19 169.0 19.6 189 263-545 143-333 (644)
74 PRK15429 formate hydrogenlyase 99.6 1.1E-14 2.5E-19 170.9 18.7 218 305-599 379-608 (686)
75 PRK12323 DNA polymerase III su 99.6 8.6E-15 1.9E-19 167.1 16.8 184 275-597 18-230 (700)
76 PRK14962 DNA polymerase III su 99.6 9.5E-15 2.1E-19 164.1 16.4 184 275-597 16-223 (472)
77 PRK14960 DNA polymerase III su 99.6 3.4E-14 7.5E-19 162.5 19.7 184 275-597 17-224 (702)
78 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.2E-14 2.5E-19 178.1 16.2 190 323-603 1628-1860(2281)
79 PRK13341 recombination factor 99.6 3.4E-14 7.3E-19 166.6 19.5 170 326-598 53-223 (725)
80 PLN03025 replication factor C 99.6 1.4E-14 3E-19 155.3 13.8 191 262-594 7-202 (319)
81 KOG0652 26S proteasome regulat 99.6 6.3E-15 1.4E-19 150.2 10.5 128 275-429 173-300 (424)
82 PRK14958 DNA polymerase III su 99.6 4.8E-14 1E-18 159.9 18.7 184 275-597 18-225 (509)
83 PRK14949 DNA polymerase III su 99.6 3.8E-14 8.2E-19 166.3 18.2 184 275-597 18-225 (944)
84 PRK07764 DNA polymerase III su 99.6 5.2E-14 1.1E-18 166.8 19.5 184 275-597 17-226 (824)
85 PRK07994 DNA polymerase III su 99.6 3.8E-14 8.3E-19 163.5 16.5 184 275-597 18-225 (647)
86 PRK10923 glnG nitrogen regulat 99.6 3.8E-14 8.2E-19 158.9 15.8 211 305-599 141-370 (469)
87 KOG0989 Replication factor C, 99.6 3.1E-14 6.8E-19 148.4 13.4 179 270-579 34-220 (346)
88 KOG0729 26S proteasome regulat 99.6 2.1E-14 4.6E-19 146.7 11.6 129 274-429 178-306 (435)
89 TIGR03345 VI_ClpV1 type VI sec 99.6 3.3E-14 7.2E-19 169.9 15.2 191 270-579 185-386 (852)
90 PF00158 Sigma54_activat: Sigm 99.6 1.1E-14 2.3E-19 142.7 9.1 121 320-474 17-152 (168)
91 PRK14964 DNA polymerase III su 99.5 1.6E-13 3.5E-18 154.2 19.7 185 275-598 15-223 (491)
92 PRK15115 response regulator Gl 99.5 1.4E-13 3E-18 153.2 18.9 210 306-599 138-366 (444)
93 PF00004 AAA: ATPase family as 99.5 1.9E-14 4.1E-19 132.0 10.0 95 328-430 1-95 (132)
94 KOG0744 AAA+-type ATPase [Post 99.5 1.2E-14 2.6E-19 152.1 9.2 156 325-551 177-344 (423)
95 PF01078 Mg_chelatase: Magnesi 99.5 4.7E-15 1E-19 148.8 6.0 184 274-538 4-206 (206)
96 PRK06645 DNA polymerase III su 99.5 2.1E-13 4.6E-18 154.1 20.0 185 275-598 23-235 (507)
97 TIGR02915 PEP_resp_reg putativ 99.5 8.8E-14 1.9E-18 154.8 16.4 219 305-599 142-371 (445)
98 PRK14952 DNA polymerase III su 99.5 1.4E-13 3.1E-18 157.8 18.4 184 275-598 15-225 (584)
99 KOG0741 AAA+-type ATPase [Post 99.5 1.4E-14 3E-19 159.0 9.5 201 326-607 257-462 (744)
100 PRK14957 DNA polymerase III su 99.5 2.8E-13 6.1E-18 154.1 20.1 184 275-597 18-225 (546)
101 KOG0726 26S proteasome regulat 99.5 5.5E-15 1.2E-19 152.6 5.3 128 275-429 187-314 (440)
102 PRK14961 DNA polymerase III su 99.5 2.6E-13 5.7E-18 148.0 18.3 184 275-597 18-225 (363)
103 PRK08691 DNA polymerase III su 99.5 2.2E-13 4.7E-18 157.1 18.4 185 275-598 18-226 (709)
104 TIGR01243 CDC48 AAA family ATP 99.5 2.1E-13 4.4E-18 161.4 18.4 217 275-602 180-398 (733)
105 PRK14959 DNA polymerase III su 99.5 2.6E-13 5.7E-18 155.6 17.6 183 275-596 18-224 (624)
106 PRK14951 DNA polymerase III su 99.5 2.1E-13 4.5E-18 157.1 16.8 187 271-597 15-230 (618)
107 KOG0740 AAA+-type ATPase [Post 99.5 1.2E-13 2.5E-18 151.5 13.4 221 274-604 154-375 (428)
108 TIGR01818 ntrC nitrogen regula 99.5 2.5E-13 5.5E-18 151.8 16.1 219 306-600 138-367 (463)
109 COG0714 MoxR-like ATPases [Gen 99.5 1.2E-13 2.7E-18 148.5 13.1 145 263-455 14-162 (329)
110 COG3283 TyrR Transcriptional r 99.5 1.6E-13 3.5E-18 145.1 13.0 213 306-599 208-431 (511)
111 TIGR02640 gas_vesic_GvpN gas v 99.5 5.8E-13 1.3E-17 139.1 17.0 157 325-545 21-196 (262)
112 PRK14963 DNA polymerase III su 99.5 6.8E-13 1.5E-17 150.3 18.7 185 275-598 16-223 (504)
113 CHL00095 clpC Clp protease ATP 99.5 3.3E-13 7.1E-18 161.4 15.8 190 270-579 177-377 (821)
114 PRK11361 acetoacetate metaboli 99.5 5.8E-13 1.3E-17 148.5 16.8 217 306-599 147-375 (457)
115 PRK14969 DNA polymerase III su 99.5 7E-13 1.5E-17 151.2 17.6 185 275-598 18-226 (527)
116 TIGR00368 Mg chelatase-related 99.5 4.2E-13 9.1E-18 151.7 15.1 249 275-607 194-484 (499)
117 COG2812 DnaX DNA polymerase II 99.5 1.8E-13 3.8E-18 153.8 11.8 190 275-598 18-226 (515)
118 PRK14965 DNA polymerase III su 99.5 1.1E-12 2.4E-17 151.1 18.7 184 275-597 18-225 (576)
119 PRK10865 protein disaggregatio 99.5 4.2E-13 9.1E-18 160.8 15.4 188 269-575 175-373 (857)
120 PRK11034 clpA ATP-dependent Cl 99.5 5.2E-13 1.1E-17 157.3 15.8 191 270-579 184-385 (758)
121 PRK14955 DNA polymerase III su 99.5 1E-12 2.3E-17 145.0 17.1 184 275-597 18-233 (397)
122 TIGR02030 BchI-ChlI magnesium 99.5 5E-13 1.1E-17 144.3 14.1 228 275-603 6-292 (337)
123 KOG0651 26S proteasome regulat 99.5 2.3E-13 5.1E-18 141.9 11.1 128 275-429 134-261 (388)
124 CHL00081 chlI Mg-protoporyphyr 99.5 5.5E-13 1.2E-17 144.3 14.4 227 275-603 19-305 (350)
125 TIGR02442 Cob-chelat-sub cobal 99.5 6.9E-13 1.5E-17 154.4 16.1 221 274-596 5-280 (633)
126 PRK13407 bchI magnesium chelat 99.5 7.7E-13 1.7E-17 142.6 14.9 242 275-629 10-304 (334)
127 PRK05563 DNA polymerase III su 99.5 1.5E-12 3.3E-17 149.4 17.8 185 275-598 18-226 (559)
128 TIGR01650 PD_CobS cobaltochela 99.4 1.4E-12 3.1E-17 139.4 15.8 160 326-545 65-231 (327)
129 TIGR02903 spore_lon_C ATP-depe 99.4 1.6E-12 3.5E-17 150.7 17.4 196 325-600 175-402 (615)
130 PRK09111 DNA polymerase III su 99.4 3.6E-12 7.9E-17 146.9 19.6 189 275-597 26-238 (598)
131 smart00350 MCM minichromosome 99.4 1.9E-12 4.2E-17 147.2 16.8 254 267-603 197-487 (509)
132 PHA02544 44 clamp loader, smal 99.4 4.8E-12 1E-16 134.7 18.6 191 275-596 23-213 (316)
133 PRK13531 regulatory ATPase Rav 99.4 3.8E-12 8.2E-17 142.0 18.2 233 264-603 11-267 (498)
134 PRK08451 DNA polymerase III su 99.4 3.7E-12 7.9E-17 144.6 18.1 185 275-598 16-224 (535)
135 PRK05896 DNA polymerase III su 99.4 3.4E-12 7.4E-17 145.9 17.7 184 275-597 18-225 (605)
136 PRK10365 transcriptional regul 99.4 3E-12 6.6E-17 142.0 16.9 218 306-599 143-371 (441)
137 PRK12402 replication factor C 99.4 3.7E-12 8.1E-17 136.1 17.0 190 275-596 17-230 (337)
138 COG3284 AcoR Transcriptional a 99.4 4.6E-13 1E-17 151.1 10.3 210 308-597 319-537 (606)
139 PRK06647 DNA polymerase III su 99.4 4.2E-12 9.1E-17 145.6 18.1 184 275-597 18-225 (563)
140 PRK04195 replication factor C 99.4 4.2E-12 9.1E-17 143.6 17.7 110 275-429 16-127 (482)
141 PRK07133 DNA polymerase III su 99.4 5E-12 1.1E-16 147.1 18.4 189 275-597 20-224 (725)
142 PRK06305 DNA polymerase III su 99.4 5.6E-12 1.2E-16 141.4 18.2 184 275-597 19-227 (451)
143 KOG0732 AAA+-type ATPase conta 99.4 3.5E-12 7.7E-17 151.0 17.0 218 275-603 267-492 (1080)
144 TIGR03346 chaperone_ClpB ATP-d 99.4 2E-12 4.3E-17 155.2 15.2 191 270-579 171-372 (852)
145 KOG0742 AAA+-type ATPase [Post 99.4 3.4E-12 7.3E-17 137.0 15.1 196 324-600 383-592 (630)
146 PRK14953 DNA polymerase III su 99.4 9.4E-12 2E-16 140.6 19.3 184 275-597 18-225 (486)
147 PRK14954 DNA polymerase III su 99.4 8.4E-12 1.8E-16 144.2 19.2 192 275-597 18-233 (620)
148 TIGR02397 dnaX_nterm DNA polym 99.4 1E-11 2.2E-16 134.0 18.4 185 275-598 16-224 (355)
149 PRK14970 DNA polymerase III su 99.4 5.9E-12 1.3E-16 137.2 16.4 189 275-597 19-214 (367)
150 PRK14948 DNA polymerase III su 99.4 8.6E-12 1.9E-16 144.5 18.5 183 275-596 18-226 (620)
151 KOG0991 Replication factor C, 99.4 2.1E-12 4.5E-17 130.4 11.5 235 275-597 29-282 (333)
152 PRK07940 DNA polymerase III su 99.4 3.6E-12 7.8E-17 140.4 13.6 113 275-430 7-143 (394)
153 TIGR03420 DnaA_homol_Hda DnaA 99.4 6.4E-12 1.4E-16 126.9 14.3 166 325-599 38-208 (226)
154 PRK14950 DNA polymerase III su 99.4 1E-11 2.2E-16 143.6 17.3 184 275-597 18-226 (585)
155 KOG0730 AAA+-type ATPase [Post 99.4 5.3E-12 1.2E-16 142.5 14.4 176 274-545 185-362 (693)
156 COG0542 clpA ATP-binding subun 99.3 1E-11 2.2E-16 144.6 15.5 197 263-579 161-369 (786)
157 PRK14971 DNA polymerase III su 99.3 2.4E-11 5.2E-16 140.8 17.9 184 275-597 19-227 (614)
158 PRK00440 rfc replication facto 99.3 2.4E-11 5.2E-16 128.7 16.1 184 275-597 19-208 (319)
159 PTZ00111 DNA replication licen 99.3 1.6E-11 3.5E-16 144.8 15.8 156 267-455 444-608 (915)
160 PF07726 AAA_3: ATPase family 99.3 4.1E-13 9E-18 125.2 1.7 111 327-456 1-112 (131)
161 PRK00411 cdc6 cell division co 99.3 6.9E-11 1.5E-15 129.5 19.2 211 273-601 30-263 (394)
162 COG0606 Predicted ATPase with 99.3 4.6E-12 9.9E-17 139.5 9.5 184 275-540 181-385 (490)
163 TIGR02928 orc1/cdc6 family rep 99.3 3.7E-11 8E-16 130.2 15.9 213 274-602 16-256 (365)
164 PRK08084 DNA replication initi 99.3 4.8E-11 1E-15 122.8 14.9 69 517-601 148-218 (235)
165 PHA02244 ATPase-like protein 99.3 6.8E-11 1.5E-15 128.2 16.0 202 307-578 101-306 (383)
166 PTZ00112 origin recognition co 99.3 7.4E-11 1.6E-15 137.4 17.2 206 273-598 755-987 (1164)
167 TIGR00764 lon_rel lon-related 99.3 1.3E-11 2.8E-16 143.0 10.6 50 269-351 14-63 (608)
168 PRK08903 DnaA regulatory inact 99.3 4.7E-11 1E-15 121.4 12.9 161 325-600 42-207 (227)
169 TIGR02031 BchD-ChlD magnesium 99.2 6.4E-11 1.4E-15 136.9 14.6 203 326-597 17-235 (589)
170 COG1224 TIP49 DNA helicase TIP 99.2 1.5E-10 3.3E-15 123.1 15.9 64 273-362 39-104 (450)
171 PF07728 AAA_5: AAA domain (dy 99.2 4E-12 8.8E-17 119.2 2.8 122 327-466 1-125 (139)
172 PRK09112 DNA polymerase III su 99.2 2.6E-10 5.6E-15 124.1 17.0 194 262-593 17-241 (351)
173 KOG0743 AAA+-type ATPase [Post 99.2 1.5E-10 3.3E-15 126.7 14.7 152 325-556 235-397 (457)
174 PRK09862 putative ATP-dependen 99.2 1.6E-10 3.4E-15 130.7 15.1 229 326-607 211-477 (506)
175 PRK14086 dnaA chromosomal repl 99.2 5E-10 1.1E-14 128.5 18.7 176 326-601 315-497 (617)
176 KOG2170 ATPase of the AAA+ sup 99.2 1.2E-10 2.7E-15 121.6 12.1 231 262-578 71-318 (344)
177 PRK08727 hypothetical protein; 99.2 3.8E-10 8.3E-15 116.0 15.0 168 326-602 42-214 (233)
178 PRK00149 dnaA chromosomal repl 99.2 7E-11 1.5E-15 132.5 10.0 176 326-601 149-331 (450)
179 PRK06893 DNA replication initi 99.2 1.3E-10 2.7E-15 119.2 10.5 64 519-598 144-209 (229)
180 PF06068 TIP49: TIP49 C-termin 99.2 3.5E-10 7.5E-15 121.9 14.2 64 273-362 24-89 (398)
181 TIGR00362 DnaA chromosomal rep 99.2 1.8E-10 3.8E-15 127.5 12.0 176 326-601 137-319 (405)
182 PRK13765 ATP-dependent proteas 99.1 1.9E-10 4.2E-15 133.3 11.1 48 270-350 28-75 (637)
183 PRK05642 DNA replication initi 99.1 5.6E-10 1.2E-14 114.9 12.7 168 326-602 46-218 (234)
184 KOG1969 DNA replication checkp 99.1 1.5E-09 3.2E-14 123.9 16.8 89 323-429 324-412 (877)
185 PRK07471 DNA polymerase III su 99.1 1.7E-09 3.7E-14 118.3 16.8 119 262-430 13-167 (365)
186 TIGR00678 holB DNA polymerase 99.1 1.2E-09 2.7E-14 108.0 13.6 143 326-579 15-181 (188)
187 cd00009 AAA The AAA+ (ATPases 99.1 1.2E-09 2.5E-14 100.0 11.0 87 325-429 19-109 (151)
188 PF14532 Sigma54_activ_2: Sigm 99.1 2.9E-11 6.2E-16 114.1 0.2 87 309-429 5-94 (138)
189 smart00763 AAA_PrkA PrkA AAA d 99.0 2.7E-09 5.8E-14 115.7 14.9 63 271-358 49-118 (361)
190 PRK12422 chromosomal replicati 99.0 9.3E-10 2E-14 123.3 11.6 174 326-599 142-320 (445)
191 COG1474 CDC6 Cdc6-related prot 99.0 3.2E-09 6.9E-14 116.2 15.5 209 275-603 19-248 (366)
192 COG1239 ChlI Mg-chelatase subu 99.0 1.5E-09 3.2E-14 118.5 12.1 210 270-580 14-281 (423)
193 PRK04132 replication factor C 99.0 2.4E-09 5.2E-14 127.1 14.5 168 321-597 560-736 (846)
194 PRK14088 dnaA chromosomal repl 99.0 2.2E-09 4.7E-14 120.3 13.3 174 326-600 131-313 (440)
195 PF05673 DUF815: Protein of un 99.0 9.1E-09 2E-13 106.0 16.6 173 275-545 29-205 (249)
196 PRK14087 dnaA chromosomal repl 99.0 2.3E-09 5E-14 120.4 12.9 180 326-603 142-330 (450)
197 PF00308 Bac_DnaA: Bacterial d 99.0 1.1E-09 2.3E-14 111.8 8.6 175 326-600 35-216 (219)
198 PRK13406 bchD magnesium chelat 99.0 5.2E-09 1.1E-13 120.6 14.8 195 326-595 26-225 (584)
199 PRK07399 DNA polymerase III su 99.0 2E-08 4.4E-13 107.9 17.8 47 274-350 5-51 (314)
200 TIGR03015 pepcterm_ATPase puta 99.0 5.1E-08 1.1E-12 101.1 19.7 72 520-603 178-249 (269)
201 COG0470 HolB ATPase involved i 99.0 4.6E-09 1E-13 111.3 12.1 86 326-429 24-134 (325)
202 COG1241 MCM2 Predicted ATPase 98.9 2.6E-09 5.6E-14 123.7 10.3 256 270-604 283-576 (682)
203 PRK05564 DNA polymerase III su 98.9 9.5E-09 2.1E-13 110.0 13.9 106 275-430 6-119 (313)
204 PRK08058 DNA polymerase III su 98.9 6.8E-09 1.5E-13 112.1 12.6 112 275-430 7-136 (329)
205 PRK06620 hypothetical protein; 98.9 7.8E-09 1.7E-13 105.2 12.1 63 519-597 130-194 (214)
206 PRK09087 hypothetical protein; 98.8 1.4E-08 3E-13 104.2 10.4 70 517-602 134-205 (226)
207 KOG0735 AAA+-type ATPase [Post 98.8 4.2E-08 9.1E-13 111.9 14.6 195 323-603 429-627 (952)
208 PF00493 MCM: MCM2/3/5 family 98.8 8.7E-10 1.9E-14 119.2 0.9 138 267-438 18-155 (331)
209 PF13177 DNA_pol3_delta2: DNA 98.8 5.4E-08 1.2E-12 94.8 12.5 105 277-430 1-128 (162)
210 KOG1942 DNA helicase, TBP-inte 98.8 1.1E-07 2.4E-12 99.2 15.1 63 514-595 348-410 (456)
211 KOG0480 DNA replication licens 98.8 6.7E-08 1.5E-12 109.2 14.5 252 267-604 339-625 (764)
212 PRK05707 DNA polymerase III su 98.8 3.1E-08 6.8E-13 107.0 11.0 86 326-430 23-132 (328)
213 PRK11331 5-methylcytosine-spec 98.7 1.8E-07 4E-12 104.2 15.0 124 325-466 194-336 (459)
214 KOG0478 DNA replication licens 98.7 2.8E-08 6E-13 113.0 8.2 95 325-439 462-561 (804)
215 TIGR00602 rad24 checkpoint pro 98.6 4.5E-07 9.8E-12 105.4 15.8 55 275-355 86-140 (637)
216 COG4650 RtcR Sigma54-dependent 98.6 3E-07 6.6E-12 96.0 12.7 93 324-431 207-309 (531)
217 smart00382 AAA ATPases associa 98.6 1.9E-07 4.2E-12 84.1 8.5 76 326-405 3-93 (148)
218 PRK06964 DNA polymerase III su 98.6 5.8E-07 1.3E-11 97.7 13.3 27 325-351 21-47 (342)
219 KOG0741 AAA+-type ATPase [Post 98.6 2.4E-06 5.2E-11 95.2 17.9 94 326-429 539-633 (744)
220 COG2607 Predicted ATPase (AAA+ 98.5 9.1E-07 2E-11 90.5 12.6 172 275-545 62-237 (287)
221 PRK06871 DNA polymerase III su 98.5 1.4E-06 2.9E-11 94.2 14.7 85 326-430 25-133 (325)
222 PRK08769 DNA polymerase III su 98.5 1.4E-06 3.1E-11 93.8 14.5 91 326-430 27-139 (319)
223 KOG2680 DNA helicase TIP49, TB 98.5 2E-06 4.3E-11 90.3 14.9 65 272-362 39-105 (454)
224 COG5271 MDN1 AAA ATPase contai 98.5 3.4E-07 7.3E-12 110.7 9.4 152 322-545 885-1045(4600)
225 PF13173 AAA_14: AAA domain 98.4 1.4E-06 3E-11 81.1 10.8 81 326-429 3-85 (128)
226 KOG0736 Peroxisome assembly fa 98.4 6.7E-07 1.5E-11 103.1 10.0 74 326-405 432-505 (953)
227 PF06309 Torsin: Torsin; Inte 98.4 1.2E-06 2.7E-11 81.9 9.5 64 262-349 14-77 (127)
228 PRK07993 DNA polymerase III su 98.4 1.8E-06 3.9E-11 93.7 12.3 88 326-430 25-134 (334)
229 PRK08699 DNA polymerase III su 98.4 2.7E-06 5.9E-11 92.0 13.5 90 326-430 22-139 (325)
230 KOG2227 Pre-initiation complex 98.4 3.1E-06 6.8E-11 93.5 13.8 206 273-598 150-377 (529)
231 COG0593 DnaA ATPase involved i 98.4 2.9E-06 6.3E-11 93.7 13.7 71 517-603 225-297 (408)
232 KOG0990 Replication factor C, 98.4 8.5E-07 1.8E-11 93.9 8.8 86 326-430 63-157 (360)
233 PRK06090 DNA polymerase III su 98.4 5.2E-06 1.1E-10 89.5 14.5 86 326-430 26-134 (319)
234 PF01637 Arch_ATPase: Archaeal 98.3 3.2E-06 7E-11 84.4 11.4 49 518-579 176-224 (234)
235 PF12774 AAA_6: Hydrolytic ATP 98.3 1.1E-05 2.3E-10 83.4 15.1 67 326-405 33-99 (231)
236 KOG2035 Replication factor C, 98.3 4.9E-06 1.1E-10 86.7 12.3 163 326-593 35-226 (351)
237 COG5271 MDN1 AAA ATPase contai 98.3 2E-06 4.4E-11 104.3 10.5 155 326-546 1544-1702(4600)
238 KOG1514 Origin recognition com 98.2 1.2E-05 2.7E-10 92.4 13.6 183 326-603 423-631 (767)
239 PRK12377 putative replication 98.2 3.4E-06 7.4E-11 87.9 8.3 85 326-431 102-192 (248)
240 PRK08116 hypothetical protein; 98.2 6.3E-06 1.4E-10 86.8 10.0 86 326-430 115-206 (268)
241 PF05621 TniB: Bacterial TniB 98.2 6.8E-05 1.5E-09 79.8 17.6 113 267-404 28-159 (302)
242 PRK15455 PrkA family serine pr 98.2 1.4E-05 3.1E-10 91.3 12.7 60 274-358 77-137 (644)
243 KOG0477 DNA replication licens 98.1 2.6E-06 5.7E-11 96.3 6.0 136 267-436 443-578 (854)
244 PF13401 AAA_22: AAA domain; P 98.1 7.4E-06 1.6E-10 75.3 7.9 87 325-429 4-113 (131)
245 PF10431 ClpB_D2-small: C-term 98.1 5.3E-06 1.1E-10 71.5 6.3 68 534-605 1-68 (81)
246 PF12775 AAA_7: P-loop contain 98.1 1.1E-05 2.5E-10 85.1 9.4 114 325-464 33-157 (272)
247 KOG0481 DNA replication licens 98.1 1.2E-06 2.7E-11 97.0 1.7 138 267-439 325-463 (729)
248 PF03215 Rad17: Rad17 cell cyc 98.0 4E-05 8.7E-10 87.7 13.3 31 326-356 46-76 (519)
249 KOG0479 DNA replication licens 98.0 7.5E-05 1.6E-09 84.3 13.8 149 269-456 297-450 (818)
250 PRK08181 transposase; Validate 98.0 8.7E-06 1.9E-10 85.9 5.7 87 324-429 105-194 (269)
251 PRK07276 DNA polymerase III su 97.9 0.00011 2.5E-09 78.2 13.2 89 326-430 25-130 (290)
252 PRK06526 transposase; Provisio 97.9 7.7E-06 1.7E-10 85.5 4.1 87 324-429 97-186 (254)
253 PRK05917 DNA polymerase III su 97.9 4.5E-05 9.8E-10 81.1 9.5 114 326-477 20-148 (290)
254 KOG0482 DNA replication licens 97.9 1.9E-05 4E-10 87.9 6.1 136 267-439 336-474 (721)
255 PRK07132 DNA polymerase III su 97.8 0.0002 4.2E-09 76.8 12.8 83 326-430 19-116 (299)
256 PF00910 RNA_helicase: RNA hel 97.8 8E-05 1.7E-09 67.5 8.3 76 328-435 1-84 (107)
257 PRK07952 DNA replication prote 97.8 0.00011 2.4E-09 76.5 10.3 86 326-430 100-190 (244)
258 COG1484 DnaC DNA replication p 97.8 5.2E-05 1.1E-09 79.4 7.5 73 324-405 104-182 (254)
259 PF01695 IstB_IS21: IstB-like 97.8 3.3E-05 7.1E-10 76.6 5.6 84 325-430 47-136 (178)
260 PRK09183 transposase/IS protei 97.8 3.4E-05 7.4E-10 80.9 5.9 89 324-430 101-192 (259)
261 PF08298 AAA_PrkA: PrkA AAA do 97.7 0.00027 5.9E-09 76.7 11.7 63 271-358 59-122 (358)
262 PF05729 NACHT: NACHT domain 97.7 0.00045 9.8E-09 65.4 12.0 78 327-405 2-96 (166)
263 KOG1051 Chaperone HSP104 and r 97.7 0.00018 3.9E-09 86.0 11.1 95 325-429 208-313 (898)
264 PRK06921 hypothetical protein; 97.7 0.00012 2.7E-09 77.0 8.7 36 326-361 118-157 (266)
265 PF07693 KAP_NTPase: KAP famil 97.6 0.0017 3.6E-08 69.3 16.7 35 325-359 20-60 (325)
266 PRK06835 DNA replication prote 97.6 0.00011 2.4E-09 79.7 7.4 85 326-430 184-274 (329)
267 KOG1808 AAA ATPase containing 97.6 2.3E-05 5.1E-10 98.7 2.5 123 325-461 440-565 (1856)
268 PRK05818 DNA polymerase III su 97.6 0.00041 8.8E-09 72.7 10.9 89 325-430 7-114 (261)
269 PF13191 AAA_16: AAA ATPase do 97.6 0.00013 2.8E-09 70.7 6.2 59 275-361 2-63 (185)
270 PF13207 AAA_17: AAA domain; P 97.5 7.4E-05 1.6E-09 68.0 3.8 31 328-358 2-32 (121)
271 COG3267 ExeA Type II secretory 97.5 0.0027 5.8E-08 66.2 14.6 187 326-604 52-253 (269)
272 cd01120 RecA-like_NTPases RecA 97.5 0.0003 6.5E-09 66.0 7.2 33 327-359 1-36 (165)
273 PRK08939 primosomal protein Dn 97.4 0.00016 3.4E-09 77.8 4.6 38 325-362 156-196 (306)
274 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.00061 1.3E-08 74.9 9.3 29 323-351 60-88 (362)
275 PRK00131 aroK shikimate kinase 97.4 0.00017 3.7E-09 69.4 4.2 33 325-357 4-36 (175)
276 PHA00729 NTP-binding motif con 97.3 0.00032 7E-09 72.1 5.9 25 326-350 18-42 (226)
277 COG0464 SpoVK ATPases of the A 97.3 0.0004 8.6E-09 79.1 6.9 97 324-430 17-113 (494)
278 PRK13947 shikimate kinase; Pro 97.3 0.00024 5.1E-09 68.8 4.0 32 327-358 3-34 (171)
279 PHA02774 E1; Provisional 97.2 0.0014 2.9E-08 75.5 10.3 80 325-438 434-514 (613)
280 PRK07261 topology modulation p 97.2 0.00071 1.5E-08 66.5 6.8 43 327-370 2-44 (171)
281 PRK08118 topology modulation p 97.2 0.00028 6E-09 69.2 3.8 33 327-359 3-35 (167)
282 TIGR02688 conserved hypothetic 97.2 0.00093 2E-08 74.4 7.8 101 324-465 208-313 (449)
283 PRK10536 hypothetical protein; 97.2 0.005 1.1E-07 64.7 12.8 23 326-348 75-97 (262)
284 PRK00625 shikimate kinase; Pro 97.2 0.00033 7.2E-09 69.2 3.9 32 327-358 2-33 (173)
285 PRK03839 putative kinase; Prov 97.2 0.00033 7.1E-09 68.8 3.8 31 327-357 2-32 (180)
286 cd00464 SK Shikimate kinase (S 97.1 0.0004 8.7E-09 65.7 4.1 31 327-357 1-31 (154)
287 KOG2543 Origin recognition com 97.1 0.0039 8.5E-08 68.1 11.9 62 271-360 4-65 (438)
288 PF13604 AAA_30: AAA domain; P 97.1 0.0019 4.1E-08 64.9 8.3 89 326-429 19-118 (196)
289 PRK00771 signal recognition pa 97.1 0.1 2.2E-06 59.0 22.7 38 324-361 94-134 (437)
290 PRK09376 rho transcription ter 97.1 0.0014 3E-08 72.5 7.7 80 326-406 170-272 (416)
291 COG0703 AroK Shikimate kinase 97.0 0.00046 1E-08 68.1 3.4 33 326-358 3-35 (172)
292 TIGR01618 phage_P_loop phage n 97.0 0.00087 1.9E-08 68.8 5.3 77 324-404 11-95 (220)
293 cd01128 rho_factor Transcripti 97.0 0.0015 3.3E-08 68.2 7.1 82 325-406 16-119 (249)
294 PF03266 NTPase_1: NTPase; In 97.0 0.0012 2.6E-08 65.0 5.9 23 327-349 1-23 (168)
295 PRK06217 hypothetical protein; 97.0 0.00061 1.3E-08 67.3 3.9 32 327-358 3-34 (183)
296 COG3854 SpoIIIAA ncharacterize 97.0 0.0029 6.3E-08 65.1 8.7 89 325-429 137-241 (308)
297 PRK13948 shikimate kinase; Pro 97.0 0.00072 1.6E-08 67.4 4.4 34 324-357 9-42 (182)
298 PRK13949 shikimate kinase; Pro 97.0 0.0006 1.3E-08 66.9 3.7 33 326-358 2-34 (169)
299 PRK14532 adenylate kinase; Pro 97.0 0.00061 1.3E-08 67.3 3.6 33 327-361 2-34 (188)
300 KOG3347 Predicted nucleotide k 96.9 0.00068 1.5E-08 65.3 3.5 36 325-362 7-42 (176)
301 PRK14530 adenylate kinase; Pro 96.9 0.00082 1.8E-08 68.1 4.2 31 326-356 4-34 (215)
302 COG1373 Predicted ATPase (AAA+ 96.9 0.007 1.5E-07 67.5 11.7 80 327-429 39-118 (398)
303 PF13671 AAA_33: AAA domain; P 96.9 0.00051 1.1E-08 64.1 2.2 26 328-353 2-27 (143)
304 PRK13946 shikimate kinase; Pro 96.9 0.00089 1.9E-08 66.3 3.8 34 325-358 10-43 (184)
305 PRK05057 aroK shikimate kinase 96.8 0.0011 2.3E-08 65.3 4.2 34 325-358 4-37 (172)
306 cd02020 CMPK Cytidine monophos 96.8 0.00099 2.2E-08 62.3 3.7 30 328-357 2-31 (147)
307 PRK14531 adenylate kinase; Pro 96.8 0.0011 2.3E-08 65.7 4.1 34 326-361 3-36 (183)
308 TIGR01425 SRP54_euk signal rec 96.8 0.16 3.4E-06 57.3 21.5 36 325-360 100-138 (429)
309 PRK14974 cell division protein 96.8 0.014 3E-07 63.7 12.8 35 325-359 140-177 (336)
310 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.001 2.2E-08 65.1 3.7 33 328-362 2-34 (183)
311 cd01428 ADK Adenylate kinase ( 96.8 0.001 2.2E-08 65.5 3.7 33 327-361 1-33 (194)
312 PRK03731 aroL shikimate kinase 96.8 0.0013 2.8E-08 63.9 4.2 33 326-358 3-35 (171)
313 cd02021 GntK Gluconate kinase 96.8 0.0011 2.3E-08 62.9 3.5 28 328-355 2-29 (150)
314 cd01124 KaiC KaiC is a circadi 96.8 0.0037 8E-08 61.0 7.3 31 328-358 2-35 (187)
315 TIGR00767 rho transcription te 96.8 0.0039 8.4E-08 69.2 8.1 80 325-405 168-270 (415)
316 PRK06762 hypothetical protein; 96.7 0.0016 3.5E-08 62.9 4.4 36 326-361 3-38 (166)
317 PF14516 AAA_35: AAA-like doma 96.7 0.042 9.1E-07 59.8 15.9 38 325-362 31-71 (331)
318 PRK04296 thymidine kinase; Pro 96.7 0.0058 1.3E-07 61.0 8.5 31 326-356 3-36 (190)
319 TIGR01313 therm_gnt_kin carboh 96.7 0.0011 2.4E-08 63.7 3.2 28 328-355 1-28 (163)
320 PRK08154 anaerobic benzoate ca 96.7 0.0024 5.3E-08 68.6 5.9 33 325-357 133-165 (309)
321 PF01583 APS_kinase: Adenylyls 96.7 0.0038 8.2E-08 60.9 6.6 37 326-362 3-42 (156)
322 PF13521 AAA_28: AAA domain; P 96.7 0.0029 6.3E-08 61.0 5.7 34 328-362 2-35 (163)
323 cd00227 CPT Chloramphenicol (C 96.7 0.0013 2.9E-08 64.4 3.4 34 326-359 3-36 (175)
324 COG1618 Predicted nucleotide k 96.6 0.008 1.7E-07 58.8 8.4 24 326-349 6-29 (179)
325 cd02027 APSK Adenosine 5'-phos 96.6 0.0062 1.3E-07 58.4 7.6 34 328-361 2-38 (149)
326 PTZ00088 adenylate kinase 1; P 96.6 0.0018 3.9E-08 66.8 4.0 32 326-357 7-38 (229)
327 PRK05480 uridine/cytidine kina 96.6 0.016 3.5E-07 58.2 10.8 37 325-361 6-43 (209)
328 PRK12723 flagellar biosynthesi 96.5 0.02 4.3E-07 63.7 11.8 25 325-349 174-198 (388)
329 PRK14528 adenylate kinase; Pro 96.5 0.0022 4.7E-08 63.8 3.9 30 326-355 2-31 (186)
330 cd01131 PilT Pilus retraction 96.4 0.013 2.8E-07 58.8 9.0 25 326-350 2-26 (198)
331 PRK02496 adk adenylate kinase; 96.4 0.0026 5.6E-08 62.6 3.7 30 327-356 3-32 (184)
332 COG1102 Cmk Cytidylate kinase 96.4 0.0026 5.6E-08 62.2 3.4 28 328-355 3-30 (179)
333 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0024 5.3E-08 62.3 3.4 33 326-360 4-36 (188)
334 PF05272 VirE: Virulence-assoc 96.4 0.021 4.6E-07 57.7 10.1 98 326-465 53-150 (198)
335 PRK06547 hypothetical protein; 96.4 0.0029 6.3E-08 62.4 3.7 33 326-358 16-48 (172)
336 TIGR02237 recomb_radB DNA repa 96.4 0.011 2.4E-07 59.2 7.9 36 325-360 12-50 (209)
337 TIGR01351 adk adenylate kinase 96.3 0.0031 6.6E-08 63.7 3.8 28 328-355 2-29 (210)
338 COG0529 CysC Adenylylsulfate k 96.3 0.011 2.3E-07 58.7 7.3 73 325-397 23-100 (197)
339 PF13238 AAA_18: AAA domain; P 96.3 0.0029 6.3E-08 57.4 3.1 22 328-349 1-22 (129)
340 PHA02624 large T antigen; Prov 96.3 0.035 7.6E-07 64.5 12.3 91 325-438 431-524 (647)
341 PRK00279 adk adenylate kinase; 96.3 0.0037 7.9E-08 63.4 3.8 29 327-355 2-30 (215)
342 KOG1968 Replication factor C, 96.3 0.011 2.4E-07 71.5 8.3 36 327-362 359-394 (871)
343 COG0563 Adk Adenylate kinase a 96.2 0.0034 7.3E-08 62.4 3.4 34 327-362 2-35 (178)
344 TIGR03574 selen_PSTK L-seryl-t 96.2 0.0084 1.8E-07 62.2 6.3 34 328-361 2-38 (249)
345 TIGR03499 FlhF flagellar biosy 96.2 0.045 9.7E-07 58.2 11.9 36 325-360 194-234 (282)
346 PLN02200 adenylate kinase fami 96.2 0.0044 9.5E-08 64.2 4.0 36 325-362 43-78 (234)
347 PF10923 DUF2791: P-loop Domai 96.2 0.04 8.7E-07 61.7 11.6 173 373-607 227-403 (416)
348 TIGR00235 udk uridine kinase. 96.1 0.025 5.5E-07 56.9 9.2 25 326-350 7-31 (207)
349 KOG1970 Checkpoint RAD17-RFC c 96.1 0.022 4.9E-07 64.8 9.5 33 325-357 110-142 (634)
350 PF13245 AAA_19: Part of AAA d 96.1 0.0087 1.9E-07 51.3 4.6 24 326-349 11-35 (76)
351 PF08433 KTI12: Chromatin asso 96.1 0.014 3.1E-07 61.8 7.2 77 328-405 4-85 (270)
352 PLN02199 shikimate kinase 96.1 0.0057 1.2E-07 65.4 4.2 34 325-358 102-135 (303)
353 TIGR01526 nadR_NMN_Atrans nico 96.1 0.01 2.3E-07 64.3 6.3 37 326-362 163-199 (325)
354 COG1936 Predicted nucleotide k 96.0 0.0041 9E-08 61.3 2.8 30 327-357 2-31 (180)
355 PHA01747 putative ATP-dependen 96.0 0.029 6.3E-07 61.4 9.4 79 324-429 189-271 (425)
356 PRK06067 flagellar accessory p 96.0 0.016 3.6E-07 59.3 7.3 36 324-359 24-62 (234)
357 PF00448 SRP54: SRP54-type pro 96.0 0.034 7.3E-07 56.1 9.3 24 326-349 2-25 (196)
358 PF00931 NB-ARC: NB-ARC domain 96.0 0.023 4.9E-07 59.4 8.4 24 325-348 19-42 (287)
359 cd02019 NK Nucleoside/nucleoti 96.0 0.0099 2.1E-07 49.6 4.6 22 328-349 2-23 (69)
360 PRK04182 cytidylate kinase; Pr 96.0 0.006 1.3E-07 59.0 3.8 29 327-355 2-30 (180)
361 PRK14527 adenylate kinase; Pro 96.0 0.0049 1.1E-07 61.2 3.2 30 325-354 6-35 (191)
362 PLN02674 adenylate kinase 96.0 0.0062 1.3E-07 63.5 4.0 35 326-362 32-66 (244)
363 PHA02530 pseT polynucleotide k 96.0 0.0055 1.2E-07 64.9 3.7 31 326-356 3-34 (300)
364 PRK04220 2-phosphoglycerate ki 96.0 0.024 5.1E-07 60.9 8.2 78 264-353 40-120 (301)
365 PRK14526 adenylate kinase; Pro 95.9 0.0064 1.4E-07 62.0 3.8 34 327-362 2-35 (211)
366 PRK04040 adenylate kinase; Pro 95.9 0.0067 1.5E-07 60.7 3.8 28 326-353 3-32 (188)
367 TIGR02173 cyt_kin_arch cytidyl 95.9 0.0056 1.2E-07 58.9 3.1 30 327-356 2-31 (171)
368 PRK10867 signal recognition pa 95.9 1 2.3E-05 50.9 21.5 37 325-361 100-140 (433)
369 PF09848 DUF2075: Uncharacteri 95.9 0.016 3.4E-07 63.4 6.9 24 326-349 2-25 (352)
370 TIGR01448 recD_rel helicase, p 95.9 0.026 5.5E-07 67.6 9.1 88 325-429 338-441 (720)
371 PRK01184 hypothetical protein; 95.9 0.007 1.5E-07 59.5 3.6 29 327-356 3-31 (184)
372 PF12780 AAA_8: P-loop contain 95.9 0.03 6.6E-07 59.2 8.6 72 324-402 30-101 (268)
373 PRK08233 hypothetical protein; 95.9 0.0086 1.9E-07 58.2 4.2 35 326-360 4-39 (182)
374 COG0572 Udk Uridine kinase [Nu 95.9 0.053 1.2E-06 55.6 9.9 104 326-460 9-114 (218)
375 PRK10078 ribose 1,5-bisphospho 95.8 0.0068 1.5E-07 60.0 3.4 30 326-355 3-32 (186)
376 PRK03846 adenylylsulfate kinas 95.8 0.028 6.1E-07 56.3 7.7 37 325-361 24-63 (198)
377 COG1116 TauB ABC-type nitrate/ 95.8 0.047 1E-06 56.9 9.5 25 325-349 29-53 (248)
378 PF05970 PIF1: PIF1-like helic 95.8 0.021 4.6E-07 62.8 7.4 27 325-351 22-48 (364)
379 TIGR01420 pilT_fam pilus retra 95.8 0.035 7.6E-07 60.6 8.9 25 326-350 123-147 (343)
380 PF01745 IPT: Isopentenyl tran 95.8 0.0086 1.9E-07 61.1 3.8 36 327-362 3-38 (233)
381 PF00406 ADK: Adenylate kinase 95.8 0.0076 1.6E-07 57.5 3.3 31 330-362 1-31 (151)
382 PRK14722 flhF flagellar biosyn 95.8 0.038 8.2E-07 61.1 9.1 26 324-349 136-161 (374)
383 KOG3354 Gluconate kinase [Carb 95.8 0.0087 1.9E-07 58.1 3.6 34 324-357 11-44 (191)
384 PF13479 AAA_24: AAA domain 95.7 0.017 3.7E-07 58.7 5.7 74 325-404 3-82 (213)
385 cd03115 SRP The signal recogni 95.7 0.022 4.8E-07 55.4 6.3 34 327-360 2-38 (173)
386 smart00534 MUTSac ATPase domai 95.7 0.046 9.9E-07 54.3 8.6 20 328-347 2-21 (185)
387 PLN02165 adenylate isopentenyl 95.7 0.009 1.9E-07 64.9 3.8 35 325-359 43-77 (334)
388 PRK14529 adenylate kinase; Pro 95.7 0.0082 1.8E-07 61.9 3.2 34 327-362 2-35 (223)
389 cd01121 Sms Sms (bacterial rad 95.7 0.015 3.2E-07 64.3 5.5 35 325-359 82-119 (372)
390 cd01130 VirB11-like_ATPase Typ 95.6 0.032 7E-07 55.3 7.3 26 325-350 25-50 (186)
391 PRK06696 uridine kinase; Valid 95.6 0.013 2.7E-07 59.9 4.5 38 325-362 22-62 (223)
392 PRK12608 transcription termina 95.6 0.033 7.2E-07 61.5 7.8 104 326-429 134-264 (380)
393 PRK11823 DNA repair protein Ra 95.6 0.039 8.5E-07 62.5 8.6 35 325-359 80-117 (446)
394 PLN02459 probable adenylate ki 95.6 0.012 2.7E-07 61.9 4.1 34 326-361 30-63 (261)
395 cd01129 PulE-GspE PulE/GspE Th 95.5 0.026 5.6E-07 59.5 6.5 25 326-350 81-105 (264)
396 PRK14021 bifunctional shikimat 95.5 0.014 3E-07 67.6 4.9 33 326-358 7-39 (542)
397 PLN03210 Resistant to P. syrin 95.5 0.03 6.5E-07 70.5 8.1 27 326-352 208-234 (1153)
398 PTZ00301 uridine kinase; Provi 95.5 0.086 1.9E-06 53.8 10.0 24 326-349 4-27 (210)
399 smart00487 DEXDc DEAD-like hel 95.5 0.076 1.6E-06 50.7 9.2 24 326-349 25-49 (201)
400 PRK00091 miaA tRNA delta(2)-is 95.5 0.012 2.6E-07 63.4 4.0 36 326-361 5-40 (307)
401 PRK05800 cobU adenosylcobinami 95.5 0.022 4.7E-07 56.2 5.4 34 327-360 3-36 (170)
402 PRK08099 bifunctional DNA-bind 95.5 0.025 5.4E-07 63.2 6.4 30 326-355 220-249 (399)
403 PRK10416 signal recognition pa 95.5 0.27 5.8E-06 53.4 14.1 36 324-359 113-151 (318)
404 PRK11889 flhF flagellar biosyn 95.4 0.19 4.2E-06 56.1 13.0 35 325-359 241-278 (436)
405 TIGR00064 ftsY signal recognit 95.4 0.043 9.4E-07 58.1 7.7 36 325-360 72-110 (272)
406 PF01443 Viral_helicase1: Vira 95.4 0.017 3.7E-07 58.5 4.5 22 328-349 1-22 (234)
407 TIGR02782 TrbB_P P-type conjug 95.4 0.05 1.1E-06 58.4 8.2 25 325-349 132-156 (299)
408 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.029 6.2E-07 57.2 6.1 22 326-347 30-51 (213)
409 COG2805 PilT Tfp pilus assembl 95.4 0.21 4.5E-06 53.6 12.5 74 324-402 124-210 (353)
410 PF10443 RNA12: RNA12 protein; 95.4 0.45 9.8E-06 53.4 15.6 36 326-363 18-55 (431)
411 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.037 8E-07 52.7 6.2 25 325-349 26-50 (144)
412 PRK09361 radB DNA repair and r 95.3 0.035 7.5E-07 56.4 6.3 35 325-359 23-60 (225)
413 TIGR00959 ffh signal recogniti 95.3 3.5 7.7E-05 46.6 22.7 37 325-361 99-139 (428)
414 COG1067 LonB Predicted ATP-dep 95.3 0.054 1.2E-06 63.8 8.5 38 382-433 217-254 (647)
415 PRK00889 adenylylsulfate kinas 95.3 0.021 4.4E-07 55.8 4.4 35 326-360 5-42 (175)
416 PRK05541 adenylylsulfate kinas 95.2 0.015 3.3E-07 56.8 3.4 35 325-359 7-44 (176)
417 PRK11860 bifunctional 3-phosph 95.2 0.067 1.5E-06 63.5 9.3 85 326-417 443-535 (661)
418 PRK13808 adenylate kinase; Pro 95.2 0.016 3.4E-07 63.1 3.7 33 327-361 2-34 (333)
419 PF00437 T2SE: Type II/IV secr 95.2 0.0072 1.6E-07 63.2 1.1 26 325-350 127-152 (270)
420 PRK12339 2-phosphoglycerate ki 95.2 0.02 4.3E-07 57.9 4.1 28 326-353 4-31 (197)
421 PF13086 AAA_11: AAA domain; P 95.2 0.016 3.4E-07 57.8 3.4 22 328-349 20-41 (236)
422 TIGR00455 apsK adenylylsulfate 95.1 0.051 1.1E-06 53.5 6.9 37 325-361 18-57 (184)
423 COG1485 Predicted ATPase [Gene 95.1 0.17 3.6E-06 55.3 11.2 27 324-350 64-90 (367)
424 PRK13900 type IV secretion sys 95.1 0.064 1.4E-06 58.5 8.1 26 325-350 160-185 (332)
425 TIGR02322 phosphon_PhnN phosph 95.1 0.016 3.5E-07 56.6 3.1 25 327-351 3-27 (179)
426 PRK06581 DNA polymerase III su 95.0 0.13 2.7E-06 53.8 9.4 116 326-479 16-144 (263)
427 PRK13975 thymidylate kinase; P 95.0 0.032 7E-07 55.1 5.1 27 326-352 3-29 (196)
428 PRK09825 idnK D-gluconate kina 95.0 0.02 4.3E-07 56.7 3.5 27 326-352 4-30 (176)
429 cd03287 ABC_MSH3_euk MutS3 hom 95.0 0.16 3.5E-06 52.3 10.2 22 326-347 32-53 (222)
430 cd02022 DPCK Dephospho-coenzym 95.0 0.023 5E-07 56.0 3.9 32 328-362 2-33 (179)
431 PRK08533 flagellar accessory p 95.0 0.071 1.5E-06 55.0 7.6 34 325-358 24-60 (230)
432 cd01123 Rad51_DMC1_radA Rad51_ 95.0 0.23 4.9E-06 50.6 11.2 36 325-360 19-63 (235)
433 PRK04841 transcriptional regul 95.0 0.3 6.6E-06 59.4 14.2 32 326-358 33-64 (903)
434 cd03280 ABC_MutS2 MutS2 homolo 94.9 0.043 9.4E-07 55.0 5.8 21 326-346 29-49 (200)
435 PF13337 Lon_2: Putative ATP-d 94.9 0.099 2.1E-06 58.9 9.0 79 323-430 206-288 (457)
436 PRK13951 bifunctional shikimat 94.9 0.021 4.5E-07 65.4 3.8 32 327-358 2-33 (488)
437 TIGR00150 HI0065_YjeE ATPase, 94.9 0.026 5.5E-07 53.7 3.8 27 326-352 23-49 (133)
438 PRK13764 ATPase; Provisional 94.9 0.043 9.4E-07 64.1 6.4 25 326-350 258-282 (602)
439 cd03222 ABC_RNaseL_inhibitor T 94.9 0.12 2.6E-06 51.3 8.7 25 325-349 25-49 (177)
440 TIGR02768 TraA_Ti Ti-type conj 94.9 0.065 1.4E-06 64.5 8.0 78 325-405 368-454 (744)
441 PTZ00202 tuzin; Provisional 94.9 0.12 2.5E-06 58.4 9.2 35 326-360 287-321 (550)
442 PF07931 CPT: Chloramphenicol 94.9 0.11 2.4E-06 51.5 8.3 37 327-363 3-39 (174)
443 TIGR00174 miaA tRNA isopenteny 94.9 0.027 5.8E-07 60.2 4.2 34 328-361 2-35 (287)
444 cd02023 UMPK Uridine monophosp 94.8 0.033 7.2E-07 55.4 4.6 34 328-361 2-36 (198)
445 cd03216 ABC_Carb_Monos_I This 94.8 0.12 2.6E-06 50.1 8.4 25 325-349 26-50 (163)
446 PRK05537 bifunctional sulfate 94.8 0.052 1.1E-06 63.3 6.8 37 325-361 392-432 (568)
447 cd00071 GMPK Guanosine monopho 94.8 0.024 5.3E-07 53.6 3.4 26 328-353 2-27 (137)
448 cd02024 NRK1 Nicotinamide ribo 94.8 0.024 5.3E-07 56.8 3.4 30 328-357 2-32 (187)
449 PF00488 MutS_V: MutS domain V 94.8 0.13 2.7E-06 53.5 8.8 24 326-349 44-67 (235)
450 cd03243 ABC_MutS_homologs The 94.8 0.049 1.1E-06 54.6 5.7 22 326-347 30-51 (202)
451 TIGR02788 VirB11 P-type DNA tr 94.8 0.052 1.1E-06 58.4 6.2 25 325-349 144-168 (308)
452 PLN02840 tRNA dimethylallyltra 94.8 0.03 6.4E-07 62.8 4.4 36 326-361 22-57 (421)
453 PRK12337 2-phosphoglycerate ki 94.7 0.095 2.1E-06 59.4 8.3 34 325-358 255-289 (475)
454 cd00544 CobU Adenosylcobinamid 94.7 0.084 1.8E-06 52.0 7.1 32 328-359 2-33 (169)
455 cd02028 UMPK_like Uridine mono 94.7 0.036 7.7E-07 54.9 4.4 35 328-362 2-39 (179)
456 PRK12727 flagellar biosynthesi 94.7 0.11 2.3E-06 60.0 8.7 26 324-349 349-374 (559)
457 PF06048 DUF927: Domain of unk 94.7 0.24 5.1E-06 52.8 10.9 104 262-405 154-257 (286)
458 cd03284 ABC_MutS1 MutS1 homolo 94.7 0.054 1.2E-06 55.3 5.8 22 326-347 31-52 (216)
459 TIGR02525 plasmid_TraJ plasmid 94.7 0.13 2.9E-06 56.9 9.2 24 326-349 150-173 (372)
460 PRK14730 coaE dephospho-CoA ki 94.7 0.029 6.3E-07 56.4 3.7 33 327-361 3-35 (195)
461 TIGR02012 tigrfam_recA protein 94.6 0.096 2.1E-06 56.9 7.8 81 325-405 55-148 (321)
462 cd03283 ABC_MutS-like MutS-lik 94.6 0.097 2.1E-06 52.8 7.4 24 326-349 26-49 (199)
463 cd03282 ABC_MSH4_euk MutS4 hom 94.6 0.097 2.1E-06 53.1 7.4 24 326-349 30-53 (204)
464 PRK11545 gntK gluconate kinase 94.6 0.022 4.8E-07 55.5 2.6 27 331-357 1-27 (163)
465 cd00267 ABC_ATPase ABC (ATP-bi 94.6 0.16 3.5E-06 48.6 8.6 26 325-350 25-50 (157)
466 TIGR03263 guanyl_kin guanylate 94.6 0.022 4.8E-07 55.5 2.6 25 327-351 3-27 (180)
467 PRK08356 hypothetical protein; 94.6 0.03 6.6E-07 55.9 3.6 32 326-360 6-37 (195)
468 KOG0922 DEAH-box RNA helicase 94.6 0.19 4.1E-06 58.6 10.3 16 326-341 67-82 (674)
469 COG2804 PulE Type II secretory 94.6 0.11 2.5E-06 58.9 8.4 70 325-402 258-339 (500)
470 PRK12338 hypothetical protein; 94.5 0.032 7E-07 60.4 3.9 30 325-354 4-33 (319)
471 PRK00300 gmk guanylate kinase; 94.5 0.03 6.4E-07 55.9 3.4 26 325-350 5-30 (205)
472 COG4088 Predicted nucleotide k 94.5 0.024 5.3E-07 57.6 2.6 22 328-349 4-25 (261)
473 TIGR01613 primase_Cterm phage/ 94.5 0.55 1.2E-05 50.3 13.2 28 326-353 77-104 (304)
474 PRK14700 recombination factor 94.4 0.13 2.8E-06 55.1 8.1 70 517-597 23-92 (300)
475 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.12 2.6E-06 54.3 7.8 35 324-358 35-72 (259)
476 PF00485 PRK: Phosphoribulokin 94.4 0.03 6.6E-07 55.8 3.2 23 328-350 2-24 (194)
477 PRK14723 flhF flagellar biosyn 94.4 1.4 3E-05 53.1 17.4 25 325-349 185-209 (767)
478 cd00983 recA RecA is a bacter 94.4 0.19 4E-06 54.8 9.4 81 325-405 55-148 (325)
479 COG1125 OpuBA ABC-type proline 94.4 0.17 3.7E-06 53.2 8.6 25 325-349 27-51 (309)
480 PF01926 MMR_HSR1: 50S ribosom 94.4 0.15 3.3E-06 46.0 7.4 21 328-348 2-22 (116)
481 COG0324 MiaA tRNA delta(2)-iso 94.4 0.04 8.7E-07 59.3 4.2 36 326-361 4-39 (308)
482 TIGR00017 cmk cytidylate kinas 94.4 0.038 8.2E-07 56.6 3.8 30 326-355 3-32 (217)
483 PF02562 PhoH: PhoH-like prote 94.4 0.16 3.5E-06 51.7 8.3 24 326-349 20-43 (205)
484 PF01202 SKI: Shikimate kinase 94.4 0.02 4.4E-07 55.2 1.7 26 334-359 1-26 (158)
485 PRK00023 cmk cytidylate kinase 94.3 0.032 6.8E-07 57.4 3.1 32 326-357 5-36 (225)
486 PRK12678 transcription termina 94.3 0.44 9.6E-06 55.4 12.4 25 325-349 416-440 (672)
487 PRK06761 hypothetical protein; 94.3 0.041 8.9E-07 58.6 4.0 33 326-358 4-36 (282)
488 cd01394 radB RadB. The archaea 94.3 0.14 3E-06 51.7 7.7 35 325-359 19-56 (218)
489 PF06745 KaiC: KaiC; InterPro 94.3 0.11 2.5E-06 52.7 7.0 36 324-359 18-57 (226)
490 KOG2228 Origin recognition com 94.2 0.49 1.1E-05 51.5 11.9 34 325-358 49-85 (408)
491 TIGR01447 recD exodeoxyribonuc 94.2 0.17 3.7E-06 59.3 9.2 25 325-349 160-184 (586)
492 PRK14737 gmk guanylate kinase; 94.2 0.035 7.6E-07 55.4 3.1 35 325-359 4-38 (186)
493 PRK06851 hypothetical protein; 94.2 0.37 8E-06 53.3 11.2 35 325-359 214-251 (367)
494 cd01672 TMPK Thymidine monopho 94.2 0.054 1.2E-06 52.9 4.3 22 328-349 3-24 (200)
495 cd01393 recA_like RecA is a b 94.2 0.13 2.9E-06 51.9 7.3 35 325-359 19-62 (226)
496 PRK09270 nucleoside triphospha 94.2 0.095 2.1E-06 53.7 6.2 26 325-350 33-58 (229)
497 PF06414 Zeta_toxin: Zeta toxi 94.1 0.043 9.4E-07 55.0 3.6 39 325-363 15-54 (199)
498 PRK00081 coaE dephospho-CoA ki 94.1 0.048 1E-06 54.6 3.9 30 327-357 4-33 (194)
499 COG4608 AppF ABC-type oligopep 94.1 0.18 4E-06 53.2 8.2 26 325-350 39-64 (268)
500 PLN02748 tRNA dimethylallyltra 94.1 0.045 9.7E-07 62.2 3.9 37 325-361 22-58 (468)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-81 Score=660.08 Aligned_cols=390 Identities=68% Similarity=1.042 Sum_probs=356.5
Q ss_pred CCCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHH--hhccCCCC-CC-------------------hh------h
Q 005762 260 DLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYH--ANLKKGSG-AE-------------------PK------T 311 (678)
Q Consensus 260 ~~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~--~~~~~~~g-~s-------------------~~------~ 311 (678)
..++|++|+++||++||||+.||+.|+++|||||+||++ ..+++.+. .+ .| .
T Consensus 132 ~~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~ 211 (564)
T KOG0745|consen 132 PPPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQI 211 (564)
T ss_pred CCCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchh
Confidence 478999999999999999999999999999999999998 33222210 00 01 2
Q ss_pred hhhcccc-ccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhc
Q 005762 312 AAAVDND-DNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 312 ~~~~~~~-~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~ 390 (678)
....+.. .++.+.++||||.||+|+|||+||+.||+.+++||+..||+.|+++||+|++++..+.+++..+.++|+.++
T Consensus 212 ~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQ 291 (564)
T KOG0745|consen 212 AKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQ 291 (564)
T ss_pred cccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHh
Confidence 2233333 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHH
Q 005762 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (678)
Q Consensus 391 ~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~ 470 (678)
.|||||||+||+.....+.+..+|+|||++|++||++|||++|+||+++.++..+++.|+|||+||+|||+|+|.+|+++
T Consensus 292 qGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~ 371 (564)
T KOG0745|consen 292 QGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKI 371 (564)
T ss_pred cCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHH
Confidence 99999999999998888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCcCcc----ccccccc--CCCchHhH-HHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHH
Q 005762 471 ISERRQDSSIGFGAP----VRANMRA--GVTDAAVT-SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVL 543 (678)
Q Consensus 471 i~~r~~~~~igF~~~----~~~~~~~--~~~~~~~~-~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il 543 (678)
|.+|..++++||+++ .+.++.+ ..+..... ..+|+.+++.||+++|++|||++|||+++.|++|++++|++||
T Consensus 372 I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VL 451 (564)
T KOG0745|consen 372 ISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVL 451 (564)
T ss_pred HHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHH
Confidence 999999999999999 5556555 33444444 4499999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccc
Q 005762 544 TEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEES 623 (678)
Q Consensus 544 ~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~ 623 (678)
++|.|+|++||+++|.+++++|+||++|++.||+.++.+++|||+||+|+|.+|+++||++|.. .|+.|+||+|.
T Consensus 452 tEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevPGS-----dI~~V~Vdee~ 526 (564)
T KOG0745|consen 452 TEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVPGS-----DIKAVLVDEEA 526 (564)
T ss_pred hcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCCCC-----ceEEEEecHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999944 49999999999
Q ss_pred cCCCCCCCCcceeecCCchHHHHHHHHhhhh
Q 005762 624 VGSVDAPGCGGKILRGEGALERYLVEAERRE 654 (678)
Q Consensus 624 v~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~ 654 (678)
|.+...++|+.+++.+++.+++|+...+.++
T Consensus 527 v~g~~~~~~s~~~~~~~~~~~~~~se~~~~~ 557 (564)
T KOG0745|consen 527 VKGEKEPGYSRKILKGDEVLERYVSETESKD 557 (564)
T ss_pred hcccCCCccchhhhcccchhhhhcccccccc
Confidence 9999999999999999999999988766554
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-74 Score=589.36 Aligned_cols=348 Identities=60% Similarity=0.978 Sum_probs=329.0
Q ss_pred CCCCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHH
Q 005762 259 EDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGK 338 (678)
Q Consensus 259 ~~~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGK 338 (678)
...|+|++|+++||+|||||+.||+.|++||||||+|+.+.. ...++++.++||||.||+|+||
T Consensus 47 ~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~----------------~~~dvEL~KSNILLiGPTGsGK 110 (408)
T COG1219 47 SELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKE----------------DNDDVELSKSNILLIGPTGSGK 110 (408)
T ss_pred ccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccC----------------CCCceeeeeccEEEECCCCCcH
Confidence 357999999999999999999999999999999999997543 2234888999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 339 TLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 339 T~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
|+||++||+.+++||...|++.|+++||+|++++..+.++++.+.++++.++.||||||||||++.+.+..++.+|+|||
T Consensus 111 TlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGE 190 (408)
T COG1219 111 TLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGE 190 (408)
T ss_pred HHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
++|++||++|||+..+||.+|.++|+...++.+||+||+|||+|+|.+|+++|.+|...+.|||+++.... ....
T Consensus 191 GVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~-----~~~~ 265 (408)
T COG1219 191 GVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSK-----SKKK 265 (408)
T ss_pred HHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccch-----hhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987532 1223
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
....+++.++|+||+++|++|||++|+|++..+.+|++++|.+||++|+|+|++||+++|++.+++|.|+++||+.||++
T Consensus 266 ~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~ 345 (408)
T COG1219 266 EEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKK 345 (408)
T ss_pred hHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccccCCCCCCC
Q 005762 579 ATAKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEESVGSVDAPG 631 (678)
Q Consensus 579 a~~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~v~~~~~~~ 631 (678)
+..+++|||+||++||.+|++.||++|..+ .+..|+|++++|.+...|-
T Consensus 346 A~~rkTGARGLRsI~E~~lld~MfelPs~~----~v~~v~I~~~~v~~~~~p~ 394 (408)
T COG1219 346 AIERKTGARGLRSIIEELLLDVMFELPSLE----DVEKVVITEEVVDGNAEPL 394 (408)
T ss_pred HHHhccchhHHHHHHHHHHHHHHhhCCCCC----CceEEEEeHHHhCCCCCCe
Confidence 999999999999999999999999999875 6789999999999877664
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=7.3e-54 Score=470.33 Aligned_cols=346 Identities=62% Similarity=0.990 Sum_probs=311.2
Q ss_pred CCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHH
Q 005762 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (678)
Q Consensus 261 ~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~ 340 (678)
+++|++|.+.|+++||||+.||+.|+.+|++||+|+.+.... ..++..++.++||+||||||||+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~---------------~~~~~~~~~~iLl~Gp~GtGKT~ 123 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKK---------------DDDVELQKSNILLIGPTGSGKTL 123 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhccccc---------------ccccccCCceEEEEcCCCCCHHH
Confidence 689999999999999999999999999999999998643210 12455667999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHH
Q 005762 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (678)
Q Consensus 341 LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~v 420 (678)
+|++||+.++.||+.+|++.+.+.+|+|.+.+..+..++..+.+.+..+.++||||||||++.+......+++|+|++++
T Consensus 124 lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~v 203 (412)
T PRK05342 124 LAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGV 203 (412)
T ss_pred HHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHH
Confidence 99999999999999999999998999999988888888888877788889999999999999987666667899999999
Q ss_pred HHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhH
Q 005762 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (678)
Q Consensus 421 q~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~ 500 (678)
|++||++|||..+.++.++.++.+....+.|+|+|++|||+|+|.++++++.+|.....+||....... ......
T Consensus 204 Q~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~-----~~~~~~ 278 (412)
T PRK05342 204 QQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSK-----KEKRTE 278 (412)
T ss_pred HHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccc-----cccchh
Confidence 999999999999999999988888899999999999999999999999999999988999998653221 011113
Q ss_pred HHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhc
Q 005762 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (678)
Q Consensus 501 ~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~ 580 (678)
..+++.+.++||+++||+|||++|+|.++.|.+|+++++.+|++++++.++++|++++...++++.|+++++++|++.+|
T Consensus 279 ~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~ 358 (412)
T PRK05342 279 GELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAI 358 (412)
T ss_pred HHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccccCCCCCC
Q 005762 581 AKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEESVGSVDAP 630 (678)
Q Consensus 581 ~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~v~~~~~~ 630 (678)
..++|||.|+++|++++.+.|+++|..+ .+..++|+++.|.....|
T Consensus 359 ~~~~GAR~Lrriie~~l~~~~~~~p~~~----~~~~v~I~~~~v~~~~~~ 404 (412)
T PRK05342 359 ERKTGARGLRSILEEILLDVMFELPSRE----DVEKVVITKEVVEGKAKP 404 (412)
T ss_pred CCCCCCchHHHHHHHHhHHHHHhccccC----CCceEEECHHHhccccCC
Confidence 9999999999999999999999999753 467899999999866433
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=1.1e-53 Score=467.26 Aligned_cols=346 Identities=60% Similarity=0.977 Sum_probs=310.6
Q ss_pred CCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHH
Q 005762 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (678)
Q Consensus 261 ~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~ 340 (678)
+++|++|++.|+++||||++||+.|..+|++||+++...... .....++..+.++||+||||||||+
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~-------------~~~~~~~~~~~~iLL~GP~GsGKT~ 131 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNK-------------KSDNGVELSKSNILLIGPTGSGKTL 131 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhcccccc-------------ccccccccCCceEEEECCCCcCHHH
Confidence 579999999999999999999999999999999998542000 0012355567899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHH
Q 005762 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (678)
Q Consensus 341 LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~v 420 (678)
+|++||+.++.||+.++++.+.+.+|+|++.+..+..++....+.+..+.++||||||||+++++.+..++++|+|++++
T Consensus 132 lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~v 211 (413)
T TIGR00382 132 LAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGV 211 (413)
T ss_pred HHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhH
Confidence 99999999999999999999998899999988889998888888888899999999999999998777888999999999
Q ss_pred HHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhH
Q 005762 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (678)
Q Consensus 421 q~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~ 500 (678)
|+.||++|||..++++..+.++.+....+.|+|+|++|||+|+|.++++++.+|.....+||..+.... ....
T Consensus 212 q~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~-------~~~~ 284 (413)
T TIGR00382 212 QQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKK-------SKEK 284 (413)
T ss_pred HHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccccc-------chhh
Confidence 999999999999999888888888889999999999999999999999999998888889998643211 1123
Q ss_pred HHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhc
Q 005762 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (678)
Q Consensus 501 ~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~ 580 (678)
..+++.+.++||++++|+|||++|+|.++.|.+|+++++.+|+.++++++.++|+++++..++++.|+++++++|++.++
T Consensus 285 ~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~ 364 (413)
T TIGR00382 285 ADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKAL 364 (413)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCC
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccccCCCCCC
Q 005762 581 AKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEESVGSVDAP 630 (678)
Q Consensus 581 ~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~v~~~~~~ 630 (678)
+..+|||.|+++||+.+.+.||++|..+ .+..|+||++.|.....+
T Consensus 365 ~~~~GAR~Lr~iie~~l~~~m~e~p~~~----~~~~v~i~~~~v~~~~~~ 410 (413)
T TIGR00382 365 ERKTGARGLRSIVEGLLLDVMFDLPSLE----DLEKVVITKETVLKQSEP 410 (413)
T ss_pred CCCCCchHHHHHHHHhhHHHHhhCCCCC----CCcEEEECHHHHcCcCCC
Confidence 9999999999999999999999999864 567899999999765443
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=1e-46 Score=408.24 Aligned_cols=285 Identities=44% Similarity=0.708 Sum_probs=248.0
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
.+|++|.++|+++|+||++||+.|..++++||+|..... . . .-...+.++||+||||||||++
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~---~-------------~-~~e~~p~~ILLiGppG~GKT~l 63 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNE---E-------------L-KDEVTPKNILMIGPTGVGKTEI 63 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhcccc---c-------------c-ccccCCceEEEECCCCCCHHHH
Confidence 479999999999999999999999999999999864211 0 0 0123468999999999999999
Q ss_pred HHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhh---------------------------------ch----
Q 005762 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA---------------------------------EF---- 384 (678)
Q Consensus 342 AralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a---------------------------------~~---- 384 (678)
|++||+.++.+|+.+|++.+.+.+|+|.+.+..++.++..+ ..
T Consensus 64 AraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~ 143 (441)
T TIGR00390 64 ARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQT 143 (441)
T ss_pred HHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 99999999999999999999988999988888888877665 00
Q ss_pred -----------------------------hH-------------------------------------------------
Q 005762 385 -----------------------------NV------------------------------------------------- 386 (678)
Q Consensus 385 -----------------------------~v------------------------------------------------- 386 (678)
.+
T Consensus 144 ~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l 223 (441)
T TIGR00390 144 EQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKAL 223 (441)
T ss_pred ccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHH
Confidence 00
Q ss_pred --------------------hhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCC
Q 005762 387 --------------------EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG 446 (678)
Q Consensus 387 --------------------~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~ 446 (678)
...+.||||||||||+.... .+.++|+|+++||+.||++|||+.+++
T Consensus 224 ~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~--~~~~~DvS~eGVQ~~LLkilEGt~v~~----------- 290 (441)
T TIGR00390 224 IAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG--ESSGADVSREGVQRDLLPIVEGSTVNT----------- 290 (441)
T ss_pred HHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC--CCCCCCCCccchhccccccccCceeee-----------
Confidence 02578999999999999764 346899999999999999999999875
Q ss_pred CeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc
Q 005762 447 DSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP 526 (678)
Q Consensus 447 ~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~ 526 (678)
+...|+|+||+|||+|+|.. +.|.| ++|||++|||
T Consensus 291 k~~~v~T~~ILFI~~GAF~~----------------------------------------~kp~D-----lIPEl~GR~P 325 (441)
T TIGR00390 291 KYGMVKTDHILFIAAGAFQL----------------------------------------AKPSD-----LIPELQGRFP 325 (441)
T ss_pred cceeEECCceeEEecCCcCC----------------------------------------CChhh-----ccHHHhCccc
Confidence 23589999999999999973 12334 7999999999
Q ss_pred eEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHHHH
Q 005762 527 ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATA-----KNTGARGLRAILESILTEAM 601 (678)
Q Consensus 527 ~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~-----~~~GAR~Lr~iIE~il~~a~ 601 (678)
+++.|.+|++++|.+||++|.|+|++||+++|+..+++|.||++|++.||+.++. .++|||+|+.++|++|.+.+
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~ 405 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDIS 405 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999986 79999999999999999999
Q ss_pred hcCCCCCCCCCCcceEEEcccccCC
Q 005762 602 YEIPDVKTGSDGVDAVVVDEESVGS 626 (678)
Q Consensus 602 ~~~p~~~~~~~~i~~v~v~~e~v~~ 626 (678)
|++|.. .+..|+||.+.|..
T Consensus 406 fe~p~~-----~~~~v~I~~~~V~~ 425 (441)
T TIGR00390 406 FEAPDL-----SGQNITIDADYVSK 425 (441)
T ss_pred hcCCCC-----CCCEEEECHHHHHh
Confidence 999976 35789999998863
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=3e-46 Score=404.83 Aligned_cols=285 Identities=45% Similarity=0.723 Sum_probs=248.5
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
.+|++|.++|+++|+||++||+.|..++++||+|..... .......+.++||+||||||||++
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~-----------------~~~~e~~~~~ILliGp~G~GKT~L 66 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPE-----------------ELRDEVTPKNILMIGPTGVGKTEI 66 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCc-----------------ccccccCCceEEEECCCCCCHHHH
Confidence 589999999999999999999999999999998753210 011122358999999999999999
Q ss_pred HHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhh---------------------------------------
Q 005762 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA--------------------------------------- 382 (678)
Q Consensus 342 AralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a--------------------------------------- 382 (678)
|++||+.++.+|+.+|++.+.+.||+|.+.+..++.++..+
T Consensus 67 Ar~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~ 146 (443)
T PRK05201 67 ARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEE 146 (443)
T ss_pred HHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCcccc
Confidence 99999999999999999999999999998888888887766
Q ss_pred --------------------------------c--h-----h--------------------------------------
Q 005762 383 --------------------------------E--F-----N-------------------------------------- 385 (678)
Q Consensus 383 --------------------------------~--~-----~-------------------------------------- 385 (678)
. . .
T Consensus 147 ~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~ 226 (443)
T PRK05201 147 EEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILI 226 (443)
T ss_pred ccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHH
Confidence 0 0 0
Q ss_pred -----------------Hhh-hcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCC
Q 005762 386 -----------------VEA-AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGD 447 (678)
Q Consensus 386 -----------------v~~-a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~ 447 (678)
+.. .+.||||||||||+....++ .+.|+|+++||+.||++|||..+++ +
T Consensus 227 ~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~-----------k 293 (443)
T PRK05201 227 EEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVST-----------K 293 (443)
T ss_pred HHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeee-----------c
Confidence 122 37899999999999986433 5889999999999999999999875 3
Q ss_pred eEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce
Q 005762 448 SIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI 527 (678)
Q Consensus 448 ~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~ 527 (678)
...|+|+||+|||+|+|.. ..+.| ++|||++|||+
T Consensus 294 ~~~i~T~~ILFI~~GAF~~----------------------------------------~kp~D-----lIPEl~GR~Pi 328 (443)
T PRK05201 294 YGMVKTDHILFIASGAFHV----------------------------------------SKPSD-----LIPELQGRFPI 328 (443)
T ss_pred ceeEECCceeEEecCCcCC----------------------------------------CChhh-----ccHHHhCccce
Confidence 3689999999999999963 12234 68999999999
Q ss_pred EEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHHHHh
Q 005762 528 LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATA-----KNTGARGLRAILESILTEAMY 602 (678)
Q Consensus 528 iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~-----~~~GAR~Lr~iIE~il~~a~~ 602 (678)
++.|.+|++++|++||++|.|+|++||+++|+..|++|.||++|++.||+.++. .++|||+|+.++|++|.+.+|
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~F 408 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISF 408 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999987 799999999999999999999
Q ss_pred cCCCCCCCCCCcceEEEcccccCC
Q 005762 603 EIPDVKTGSDGVDAVVVDEESVGS 626 (678)
Q Consensus 603 ~~p~~~~~~~~i~~v~v~~e~v~~ 626 (678)
++|.. .+..|+||++.|..
T Consensus 409 e~p~~-----~~~~v~I~~~~V~~ 427 (443)
T PRK05201 409 EAPDM-----SGETVTIDAAYVDE 427 (443)
T ss_pred cCCCC-----CCCEEEECHHHHHH
Confidence 99986 35789999999863
No 7
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-41 Score=349.13 Aligned_cols=287 Identities=44% Similarity=0.689 Sum_probs=246.4
Q ss_pred CCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHH
Q 005762 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (678)
Q Consensus 261 ~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~ 340 (678)
..+|++|..+||+|||||+.||+.+..|+.|+|+|..-... -.-+..+.|||++||+|+|||.
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~-----------------lr~EV~PKNILMIGpTGVGKTE 65 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEE-----------------LRDEVTPKNILMIGPTGVGKTE 65 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHH-----------------HhhccCccceEEECCCCCcHHH
Confidence 46899999999999999999999999999999998643211 1123457999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhH----------------------------------
Q 005762 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV---------------------------------- 386 (678)
Q Consensus 341 LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v---------------------------------- 386 (678)
+||.||+..+.||+.+.++.|++.||||.++++.++.+...+-..+
T Consensus 66 IARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~ 145 (444)
T COG1220 66 IARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQ 145 (444)
T ss_pred HHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence 9999999999999999999999999999999999988776320000
Q ss_pred --------------------------------------------------------------------------------
Q 005762 387 -------------------------------------------------------------------------------- 386 (678)
Q Consensus 387 -------------------------------------------------------------------------------- 386 (678)
T Consensus 146 ~~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~ 225 (444)
T COG1220 146 SENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKL 225 (444)
T ss_pred CcccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHH
Confidence
Q ss_pred ---------------------hhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCC
Q 005762 387 ---------------------EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPR 445 (678)
Q Consensus 387 ---------------------~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~ 445 (678)
...+.||||||||||++...+ .+++|+|++++|.-||+++||..++.
T Consensus 226 L~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T---------- 293 (444)
T COG1220 226 LIEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST---------- 293 (444)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeec----------
Confidence 013578999999999998643 33459999999999999999988864
Q ss_pred CCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCccccccc
Q 005762 446 GDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRF 525 (678)
Q Consensus 446 ~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~ 525 (678)
+.=.+.|..++||.+|+|.- ..|.| ++|||.+||
T Consensus 294 -KyG~VkTdHILFIasGAFh~----------------------------------------sKPSD-----LiPELQGRf 327 (444)
T COG1220 294 -KYGPVKTDHILFIASGAFHV----------------------------------------AKPSD-----LIPELQGRF 327 (444)
T ss_pred -cccccccceEEEEecCceec----------------------------------------CChhh-----cChhhcCCC
Confidence 12267899999999999851 11233 899999999
Q ss_pred ceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHHHH
Q 005762 526 PILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT-----AKNTGARGLRAILESILTEA 600 (678)
Q Consensus 526 ~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~-----~~~~GAR~Lr~iIE~il~~a 600 (678)
|+-|.+.+|+.+|+++||+++.++|++||+.+++..++.+.|++++++.||+.+| ..+.|||-|..++|++|.+.
T Consensus 328 PIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLedi 407 (444)
T COG1220 328 PIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDI 407 (444)
T ss_pred ceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998 57889999999999999999
Q ss_pred HhcCCCCCCCCCCcceEEEcccccCCC
Q 005762 601 MYEIPDVKTGSDGVDAVVVDEESVGSV 627 (678)
Q Consensus 601 ~~~~p~~~~~~~~i~~v~v~~e~v~~~ 627 (678)
.|++|+... ..|+||.+.|...
T Consensus 408 SFeA~d~~g-----~~v~Id~~yV~~~ 429 (444)
T COG1220 408 SFEAPDMSG-----QKVTIDAEYVEEK 429 (444)
T ss_pred CccCCcCCC-----CeEEEcHHHHHHH
Confidence 999998854 5799999888754
No 8
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-34 Score=331.42 Aligned_cols=294 Identities=23% Similarity=0.356 Sum_probs=224.7
Q ss_pred CcccCCCCCCCCCCCHH----HHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccccc
Q 005762 249 GSRWGGSNLGEDLPTPK----EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (678)
Q Consensus 249 ~~~~~g~~~~~~~~~p~----el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (678)
++.|+|+|+.+....++ .+++.|.+.|+||++|++.|..+|.+....+. +.. .+
T Consensus 463 v~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~------------------dp~----rP 520 (786)
T COG0542 463 VARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLG------------------DPN----RP 520 (786)
T ss_pred HHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCC------------------CCC----CC
Confidence 57899999997665554 48999999999999999999999974422211 111 22
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEecccccc-----------ccccccchHHHHHHHHHhhchhHhhhc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~ 390 (678)
-..+||.||+|||||.||++||..+. ..++++||+++.+ .||||++.++.+++..+..++
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~Py------ 594 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPY------ 594 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCC------
Confidence 36899999999999999999999996 7999999999874 499999999999999888766
Q ss_pred CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHH
Q 005762 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (678)
Q Consensus 391 ~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~ 469 (678)
+||+||||+|.+++ +++.||++|| |+.+ +. ....+|++|.++|||+|... +.
T Consensus 595 -SViLlDEIEKAHpd--------------V~nilLQVlDdGrLT--D~---------~Gr~VdFrNtiIImTSN~Gs-~~ 647 (786)
T COG0542 595 -SVILLDEIEKAHPD--------------VFNLLLQVLDDGRLT--DG---------QGRTVDFRNTIIIMTSNAGS-EE 647 (786)
T ss_pred -eEEEechhhhcCHH--------------HHHHHHHHhcCCeee--cC---------CCCEEecceeEEEEecccch-HH
Confidence 79999999999998 9999999999 6555 22 33478999999999998532 22
Q ss_pred HHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHH
Q 005762 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (678)
Q Consensus 470 ~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~ 549 (678)
+.. . .++ .. ..........+++ .++..|.|||++|||.+|.|.+|+.+++.+|+...++.
T Consensus 648 i~~-~-----~~~--~~------~~~~~~~~~~v~~------~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 648 ILR-D-----ADG--DD------FADKEALKEAVME------ELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred HHh-h-----ccc--cc------cchhhhHHHHHHH------HHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 111 1 111 00 0011122222333 34566999999999999999999999999999986555
Q ss_pred HHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEccc
Q 005762 550 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEE 622 (678)
Q Consensus 550 L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e 622 (678)
+.++ +...++.+.+++++.++|++.+|+..+|||.|+++|++.+.+.+.+..-..... .-..|.|+.+
T Consensus 708 l~~~----L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~~~-~~~~v~v~~~ 775 (786)
T COG0542 708 LAKR----LAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIE-DGGTVKVDVD 775 (786)
T ss_pred HHHH----HHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcccC-CCcEEEEEec
Confidence 5544 445799999999999999999999999999999999999999987654332211 1245555544
No 9
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=7.5e-31 Score=306.65 Aligned_cols=275 Identities=21% Similarity=0.317 Sum_probs=213.0
Q ss_pred CcccCCCCCCCCCCC----HHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccccc
Q 005762 249 GSRWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (678)
Q Consensus 249 ~~~~~g~~~~~~~~~----p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (678)
++.|+|+|+.....+ ...+++.|.+.|+||++|++.|..+|..++..+... ..+
T Consensus 430 ~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~----------------------~kp 487 (758)
T PRK11034 430 VARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHE----------------------HKP 487 (758)
T ss_pred HHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCC----------------------CCC
Confidence 568999998875443 345888999999999999999999997543222110 112
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccccc-----------ccccccchHHHHHHHHHhhchhHhhhcCcE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gI 393 (678)
..++||+||||||||++|+++|+.++.+|+.+||+++.+ .||+|++..+.+.+.+... ..+|
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~-------p~sV 560 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH-------PHAV 560 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhC-------CCcE
Confidence 367999999999999999999999999999999998753 3788876556666655443 4589
Q ss_pred EEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHH
Q 005762 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTIS 472 (678)
Q Consensus 394 LfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~ 472 (678)
|||||||++++. +++.||++|| |..+. . ....++++|++||+|+|.. .+.+.
T Consensus 561 lllDEieka~~~--------------v~~~LLq~ld~G~ltd--~---------~g~~vd~rn~iiI~TsN~g-~~~~~- 613 (758)
T PRK11034 561 LLLDEIEKAHPD--------------VFNLLLQVMDNGTLTD--N---------NGRKADFRNVVLVMTTNAG-VRETE- 613 (758)
T ss_pred EEeccHhhhhHH--------------HHHHHHHHHhcCeeec--C---------CCceecCCCcEEEEeCCcC-HHHHh-
Confidence 999999999987 9999999999 54432 1 1236799999999999843 33332
Q ss_pred hhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHH
Q 005762 473 ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGK 552 (678)
Q Consensus 473 ~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~ 552 (678)
...+||..... ....+ +.++..|.|||++|||.+|.|.+|+.+++.+|+... +.
T Consensus 614 ----~~~~g~~~~~~------------~~~~~------~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~----l~ 667 (758)
T PRK11034 614 ----RKSIGLIHQDN------------STDAM------EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF----IV 667 (758)
T ss_pred ----hcccCcccchh------------hHHHH------HHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHH----HH
Confidence 23577753211 01111 234566999999999999999999999999999864 44
Q ss_pred HHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005762 553 QYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 605 (678)
Q Consensus 553 q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p 605 (678)
++.+.++..++++.++++++++|++.+|+..+|||.|+++|++.+...+.+..
T Consensus 668 ~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 668 ELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 45555667899999999999999999999999999999999999999987653
No 10
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=1.9e-29 Score=299.64 Aligned_cols=287 Identities=23% Similarity=0.329 Sum_probs=216.9
Q ss_pred CcccCCCCCCCCCCC----HHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccccc
Q 005762 249 GSRWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (678)
Q Consensus 249 ~~~~~g~~~~~~~~~----p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (678)
++.|+|+|+...... ...+++.|.+.|+||+.|++.|..+|...+..+.... .+
T Consensus 481 ~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~----------------------~p 538 (821)
T CHL00095 481 VSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPN----------------------RP 538 (821)
T ss_pred HHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCC----------------------CC
Confidence 578999999875544 3458999999999999999999999975543322111 12
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccc-----------cccccccchHHHHHHHHHhhchhHhhhc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~-----------~sgyvG~~~~~~l~~l~~~a~~~v~~a~ 390 (678)
...+||+||||||||+||++||+.+ ..+++.+|++++. ..||+|++....+.+.+...+
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p------- 611 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKP------- 611 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCC-------
Confidence 2568999999999999999999998 3689999998774 247888886666766665543
Q ss_pred CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHH
Q 005762 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (678)
Q Consensus 391 ~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~ 469 (678)
.+||||||||++++. +++.||++|| |..+. . ....++++|.+||||+|... +
T Consensus 612 ~~VvllDeieka~~~--------------v~~~Llq~le~g~~~d--~---------~g~~v~~~~~i~I~Tsn~g~--~ 664 (821)
T CHL00095 612 YTVVLFDEIEKAHPD--------------IFNLLLQILDDGRLTD--S---------KGRTIDFKNTLIIMTSNLGS--K 664 (821)
T ss_pred CeEEEECChhhCCHH--------------HHHHHHHHhccCceec--C---------CCcEEecCceEEEEeCCcch--H
Confidence 379999999999987 9999999999 55442 1 23468899999999998653 3
Q ss_pred HHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHH
Q 005762 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (678)
Q Consensus 470 ~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~ 549 (678)
.|.. ....+||....... ....+ ..+.+.+. ++ ++..|.|||++|+|.+|.|.+|+.+++.+|+...++.
T Consensus 665 ~i~~--~~~~~gf~~~~~~~--~~~~~----~~~~~~~~-~~-~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 665 VIET--NSGGLGFELSENQL--SEKQY----KRLSNLVN-EE-LKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred HHHh--hccccCCccccccc--ccccH----HHHHHHHH-HH-HHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3331 23457887543211 00011 12222222 22 3444999999999999999999999999999986665
Q ss_pred HHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005762 550 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 605 (678)
Q Consensus 550 L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p 605 (678)
+.++ +...++.+.++++++++|++.+|+..+|||.|+++|++.+...+.+..
T Consensus 735 l~~r----l~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 735 LFKR----LNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred HHHH----HHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 5554 345699999999999999999999999999999999999998887654
No 11
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.96 E-value=3.1e-29 Score=294.69 Aligned_cols=276 Identities=22% Similarity=0.344 Sum_probs=209.7
Q ss_pred CcccCCCCCCCCC----CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccccc
Q 005762 249 GSRWGGSNLGEDL----PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (678)
Q Consensus 249 ~~~~~g~~~~~~~----~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (678)
+..|+|+|+.... .....+++.|.+.|+||++|++.|..++......+... ..+
T Consensus 426 i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~----------------------~~p 483 (731)
T TIGR02639 426 VAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNP----------------------NKP 483 (731)
T ss_pred HHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCC----------------------CCC
Confidence 4569999986543 34556899999999999999999988886321111000 012
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccccc-----------ccccccchHHHHHHHHHhhchhHhhhcCcE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gI 393 (678)
..++||+||||||||++|++||+.++.+|+.+|++++.+ .||+|++..+.+.+.++.. ..+|
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~-------p~~V 556 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKH-------PHCV 556 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhC-------CCeE
Confidence 357999999999999999999999999999999998753 4788888666676666543 4489
Q ss_pred EEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHh
Q 005762 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISE 473 (678)
Q Consensus 394 LfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~ 473 (678)
|||||||++++. +++.||++||...+. +. ....++.+|.+||+|+|... + .+
T Consensus 557 vllDEieka~~~--------------~~~~Ll~~ld~g~~~-d~---------~g~~vd~~~~iii~Tsn~g~-~-~~-- 608 (731)
T TIGR02639 557 LLLDEIEKAHPD--------------IYNILLQVMDYATLT-DN---------NGRKADFRNVILIMTSNAGA-S-EM-- 608 (731)
T ss_pred EEEechhhcCHH--------------HHHHHHHhhccCeee-cC---------CCcccCCCCCEEEECCCcch-h-hh--
Confidence 999999999987 999999999943321 11 23467899999999998542 1 11
Q ss_pred hcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHH
Q 005762 474 RRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQ 553 (678)
Q Consensus 474 r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q 553 (678)
....+||..... ...+ .+.++..|.|||++|||.+|.|.+|+.+++.+|+...++.+.
T Consensus 609 --~~~~~~f~~~~~------------~~~~------~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~-- 666 (731)
T TIGR02639 609 --SKPPIGFGSENV------------ESKS------DKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELS-- 666 (731)
T ss_pred --hhccCCcchhhh------------HHHH------HHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHH--
Confidence 123466643211 0111 233456699999999999999999999999999997555444
Q ss_pred HHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005762 554 YKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 605 (678)
Q Consensus 554 ~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p 605 (678)
+.+...++++.++++++++|++.+|...+|||.|+++|++.+...+.+..
T Consensus 667 --~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 667 --KQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred --HHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 44455689999999999999999999999999999999999999987653
No 12
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=4.8e-28 Score=287.43 Aligned_cols=278 Identities=20% Similarity=0.327 Sum_probs=207.0
Q ss_pred CcccCCCCCCCCCCC----HHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccccc
Q 005762 249 GSRWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (678)
Q Consensus 249 ~~~~~g~~~~~~~~~----p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (678)
++.|+|+|+.....+ ...+++.|.+.|+||+.|++.|..+|...+..+... ..+
T Consensus 538 v~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~----------------------~~p 595 (852)
T TIGR03345 538 VADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDP----------------------RKP 595 (852)
T ss_pred HHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCC----------------------CCC
Confidence 568999999875543 445899999999999999999999986432111100 012
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccc-----------ccccccchHHHHHHHHHhhchhHhhhc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~ 390 (678)
...+||+||||||||.+|++||+.+ ...|+.+|++++.+ .||+|+...+.+.+.++.. +
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~-------p 668 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRK-------P 668 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhC-------C
Confidence 3469999999999999999999999 45889999997643 3799988667776666553 4
Q ss_pred CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHH
Q 005762 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (678)
Q Consensus 391 ~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~ 469 (678)
.+||+|||||++++. +++.|+++|+ |.... . ....++++|.+||+|+|... +.
T Consensus 669 ~svvllDEieka~~~--------------v~~~Llq~ld~g~l~d--~---------~Gr~vd~~n~iiI~TSNlg~-~~ 722 (852)
T TIGR03345 669 YSVVLLDEVEKAHPD--------------VLELFYQVFDKGVMED--G---------EGREIDFKNTVILLTSNAGS-DL 722 (852)
T ss_pred CcEEEEechhhcCHH--------------HHHHHHHHhhcceeec--C---------CCcEEeccccEEEEeCCCch-HH
Confidence 589999999999987 9999999999 54431 1 23478999999999988542 22
Q ss_pred HHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHH
Q 005762 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (678)
Q Consensus 470 ~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~ 549 (678)
+.. .. .++... .........+++ .+...|.|||++|++ +|.|.+|+.+++.+|+...++.
T Consensus 723 ~~~-~~----~~~~~~--------~~~~~~~~~~~~------~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 723 IMA-LC----ADPETA--------PDPEALLEALRP------ELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred HHH-hc----cCcccC--------cchHHHHHHHHH------HHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 211 11 011000 000111111222 234559999999997 7899999999999999987777
Q ss_pred HHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcC
Q 005762 550 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEI 604 (678)
Q Consensus 550 L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~ 604 (678)
+.+++.. ..++.+.++++++++|++.++...+|||.|+++|+..+...+.+.
T Consensus 783 l~~rl~~---~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 783 IARRLKE---NHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred HHHHHHH---hcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 7666533 237899999999999999999999999999999999999888764
No 13
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.94 E-value=3.6e-26 Score=272.57 Aligned_cols=275 Identities=23% Similarity=0.360 Sum_probs=204.5
Q ss_pred CcccCCCCCCCCCCC----HHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccccc
Q 005762 249 GSRWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (678)
Q Consensus 249 ~~~~~g~~~~~~~~~----p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (678)
++.|+|+|+...... ...+++.|.+.|+||+.|++.|..+|......+... ..+
T Consensus 537 ~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~----------------------~~p 594 (852)
T TIGR03346 537 VSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDP----------------------NRP 594 (852)
T ss_pred HHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCC----------------------CCC
Confidence 567999999875443 344788899999999999999999986432111110 012
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccc-----------ccccccchHHHHHHHHHhhchhHhhhc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~ 390 (678)
...+||+||||||||++|++||+.+ ..+|+.+||+++.+ .||+|+.....+...+... .
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~-------p 667 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRK-------P 667 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcC-------C
Confidence 3579999999999999999999988 46899999987642 3678877556666655543 3
Q ss_pred CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHH
Q 005762 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (678)
Q Consensus 391 ~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~ 469 (678)
.+|||||||+++++. +++.||++|+ |.... .....++.+|.+||+|+|... +.
T Consensus 668 ~~vlllDeieka~~~--------------v~~~Ll~~l~~g~l~d-----------~~g~~vd~rn~iiI~TSn~g~-~~ 721 (852)
T TIGR03346 668 YSVVLFDEVEKAHPD--------------VFNVLLQVLDDGRLTD-----------GQGRTVDFRNTVIIMTSNLGS-QF 721 (852)
T ss_pred CcEEEEeccccCCHH--------------HHHHHHHHHhcCceec-----------CCCeEEecCCcEEEEeCCcch-Hh
Confidence 469999999999987 9999999998 54431 234578899999999998532 11
Q ss_pred HHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHH
Q 005762 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (678)
Q Consensus 470 ~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~ 549 (678)
+.. ... ++ ........+++ .++..|.|||++|||.++.|.||+.+++.+|+...++.
T Consensus 722 ~~~-~~~----~~------------~~~~~~~~~~~------~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 722 IQE-LAG----GD------------DYEEMREAVME------VLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred Hhh-hcc----cc------------cHHHHHHHHHH------HHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 111 000 00 01111111222 23456999999999999999999999999999986665
Q ss_pred HHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005762 550 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 605 (678)
Q Consensus 550 L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p 605 (678)
+.+++ ...++.+.++++++++|+++.|...+|||+|+++|++.+...+.+..
T Consensus 779 l~~~l----~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 779 LRKRL----AERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred HHHHH----HHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 55443 34578899999999999999999999999999999999999887643
No 14
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.94 E-value=3.1e-26 Score=272.61 Aligned_cols=275 Identities=24% Similarity=0.396 Sum_probs=203.3
Q ss_pred CcccCCCCCCCCCCCH----HHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccccc
Q 005762 249 GSRWGGSNLGEDLPTP----KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (678)
Q Consensus 249 ~~~~~g~~~~~~~~~p----~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (678)
++.|+|+|+.+..... ..+++.|.+.|+||+.|++.|..+|......+.... .+
T Consensus 540 v~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~----------------------~p 597 (857)
T PRK10865 540 LARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPN----------------------RP 597 (857)
T ss_pred HHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCC----------------------CC
Confidence 5689999999865543 458899999999999999999999863321111000 11
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccc-----------ccccccchHHHHHHHHHhhchhHhhhc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~ 390 (678)
..++||+||||||||++|++||+.+ +.+|+.++|+++.+ .||+|++..+.+.+.+... .
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~-------p 670 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRR-------P 670 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhC-------C
Confidence 2479999999999999999999988 45899999987643 3677776555555544332 4
Q ss_pred CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHH
Q 005762 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (678)
Q Consensus 391 ~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~ 469 (678)
.+|||||||+++++. +++.|+++|+ |.... .....++.+|.+||+|+|... +
T Consensus 671 ~~vLllDEieka~~~--------------v~~~Ll~ile~g~l~d-----------~~gr~vd~rn~iiI~TSN~g~--~ 723 (857)
T PRK10865 671 YSVILLDEVEKAHPD--------------VFNILLQVLDDGRLTD-----------GQGRTVDFRNTVVIMTSNLGS--D 723 (857)
T ss_pred CCeEEEeehhhCCHH--------------HHHHHHHHHhhCceec-----------CCceEEeecccEEEEeCCcch--H
Confidence 479999999999987 9999999998 54431 123568899999999998642 1
Q ss_pred HHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHH
Q 005762 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (678)
Q Consensus 470 ~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~ 549 (678)
.+.++ +| .. ........++ +.+...|.|+|++|+|.++.|.||+.+++.+|+...++.
T Consensus 724 ~~~~~-----~~--~~---------~~~~~~~~~~------~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 724 LIQER-----FG--EL---------DYAHMKELVL------GVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred HHHHh-----cc--cc---------chHHHHHHHH------HHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 22211 11 11 0111111122 234556999999999999999999999999999986655
Q ss_pred HHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005762 550 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 605 (678)
Q Consensus 550 L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p 605 (678)
+..++ ...++.+.++++++++|++++|+..+|||.|+++|++.+.+.+.+..
T Consensus 782 l~~rl----~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 782 LYKRL----EERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred HHHHH----HhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 55443 34577889999999999999999999999999999999999877643
No 15
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.9e-24 Score=243.56 Aligned_cols=256 Identities=23% Similarity=0.297 Sum_probs=206.6
Q ss_pred ccCCCCCCC---CCCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCc
Q 005762 251 RWGGSNLGE---DLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSN 327 (678)
Q Consensus 251 ~~~g~~~~~---~~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~ 327 (678)
+....|+.. ...+.++.++.||+...|++++|+.+.+.|.-. ++ . .. ....-
T Consensus 298 wll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~-~l-~-~~----------------------~kGpI 352 (782)
T COG0466 298 WLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQ-KL-T-KK----------------------LKGPI 352 (782)
T ss_pred HHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHH-HH-h-cc----------------------CCCcE
Confidence 334444443 445678889999999999999999999887411 11 1 11 11267
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccc--------cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~s--------gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 399 (678)
+||+||||+|||+|++.||+.++.+|++++...+.+. .|+|.-+++.+..+-+.... ..+++||||
T Consensus 353 LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~------NPv~LLDEI 426 (782)
T COG0466 353 LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVK------NPVFLLDEI 426 (782)
T ss_pred EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCc------CCeEEeech
Confidence 9999999999999999999999999999999876642 59999988877777655433 379999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCC
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSS 479 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ 479 (678)
||+..+..+ | -.++||+.|| |+++..+.+++-.+.+|.++++||||+|.-+
T Consensus 427 DKm~ss~rG-----D-----PaSALLEVLD------PEQN~~F~DhYLev~yDLS~VmFiaTANsl~------------- 477 (782)
T COG0466 427 DKMGSSFRG-----D-----PASALLEVLD------PEQNNTFSDHYLEVPYDLSKVMFIATANSLD------------- 477 (782)
T ss_pred hhccCCCCC-----C-----hHHHHHhhcC------HhhcCchhhccccCccchhheEEEeecCccc-------------
Confidence 999876332 3 7889999999 8899999999999999999999999998432
Q ss_pred CCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHh
Q 005762 480 IGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFS 559 (678)
Q Consensus 480 igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~ 559 (678)
+ +..+|+.|+. +|.++.|+++|..+|.+. +|+.+..+...
T Consensus 478 ------------------t------------------IP~PLlDRME-iI~lsgYt~~EKl~IAk~---~LiPk~~~~~g 517 (782)
T COG0466 478 ------------------T------------------IPAPLLDRME-VIRLSGYTEDEKLEIAKR---HLIPKQLKEHG 517 (782)
T ss_pred ------------------c------------------CChHHhccee-eeeecCCChHHHHHHHHH---hcchHHHHHcC
Confidence 2 3335555553 679999999999999986 57777777666
Q ss_pred cCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 005762 560 MNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 607 (678)
Q Consensus 560 ~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~ 607 (678)
....++.|+++|+..|.++ |.++.|+|+|++.|..+++.+..++...
T Consensus 518 L~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i~~~ 564 (782)
T COG0466 518 LKKGELTITDEAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKILLK 564 (782)
T ss_pred CCccceeecHHHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 7777899999999999998 8999999999999999999999887654
No 16
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-23 Score=243.67 Aligned_cols=287 Identities=23% Similarity=0.318 Sum_probs=215.3
Q ss_pred CCCcccCCCCCCCCCC----CHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccc
Q 005762 247 GGGSRWGGSNLGEDLP----TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVE 322 (678)
Q Consensus 247 ~~~~~~~g~~~~~~~~----~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~ 322 (678)
..++.|+|+|+..... ....|++.|.+.|+||++|+.+|..+|......+...
T Consensus 532 ~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~----------------------- 588 (898)
T KOG1051|consen 532 EVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP----------------------- 588 (898)
T ss_pred hhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-----------------------
Confidence 3468899999988654 4455899999999999999999999997432211110
Q ss_pred ccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccc--------cccccccchHHHHHHHHHhhchhHhhhcC
Q 005762 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT--------QAGYVGEDVESILYKLLAQAEFNVEAAQQ 391 (678)
Q Consensus 323 ~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~--------~sgyvG~~~~~~l~~l~~~a~~~v~~a~~ 391 (678)
.+..-+||.||+|||||.||+++|.++ ...|+.+|++++. ..||+|+...+.+++.++..++
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~------- 661 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPY------- 661 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCc-------
Confidence 134679999999999999999999999 3489999999733 3589999988899988887766
Q ss_pred cEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHH
Q 005762 392 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (678)
Q Consensus 392 gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~ 470 (678)
+||+|||||+.++. +++.|+++|| |+..+ .....|+.+|++||+|.|-.. ..
T Consensus 662 sVVLfdeIEkAh~~--------------v~n~llq~lD~GrltD-----------s~Gr~Vd~kN~I~IMTsn~~~--~~ 714 (898)
T KOG1051|consen 662 SVVLFEEIEKAHPD--------------VLNILLQLLDRGRLTD-----------SHGREVDFKNAIFIMTSNVGS--SA 714 (898)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHHhcCcccc-----------CCCcEeeccceEEEEecccch--Hh
Confidence 79999999999987 9999999999 65552 233478999999999987432 22
Q ss_pred HHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh----hcCCcccccccceEEecCCcCHHHHHHHHhch
Q 005762 471 ISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA----YGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (678)
Q Consensus 471 i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~----~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ 546 (678)
+..... ..+|....... ..... ..+....+.+. +.|.|||++|++.++.|.+++.+++.+|+..+
T Consensus 715 i~~~~~--~~~~l~~~~~~---~~~~~------~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~ 783 (898)
T KOG1051|consen 715 IANDAS--LEEKLLDMDEK---RGSYR------LKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQ 783 (898)
T ss_pred hhcccc--cccccccchhh---hhhhh------hhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhH
Confidence 222211 11121111110 00000 11122234445 77999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005762 547 KNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 605 (678)
Q Consensus 547 ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p 605 (678)
+..+.+.+. ..+..+.+++.+...++...|+..+|||.|++.|++.+.+.+....
T Consensus 784 ~~e~~~r~~----~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~ 838 (898)
T KOG1051|consen 784 LTEIEKRLE----ERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEAL 838 (898)
T ss_pred HHHHHHHhh----hhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhh
Confidence 555554443 3456777999999999999999999999999999999999987654
No 17
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.90 E-value=4.5e-23 Score=243.98 Aligned_cols=257 Identities=22% Similarity=0.283 Sum_probs=188.6
Q ss_pred CcccCCCCCCCC---CCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccC
Q 005762 249 GSRWGGSNLGED---LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEK 325 (678)
Q Consensus 249 ~~~~~g~~~~~~---~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~ 325 (678)
..+++++|+... ..+.+.+++.|++.++||+.+|+.|.+.+..+..+ .. ...
T Consensus 293 l~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~---~~----------------------~~~ 347 (775)
T TIGR00763 293 LDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR---GK----------------------MKG 347 (775)
T ss_pred HHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh---cC----------------------CCC
Confidence 345566666553 33467788999999999999999998866422110 00 012
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccccc--------ccccccchHHHHHHHHHhhchhHhhhcCcEEEEc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYID 397 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfID 397 (678)
.++||+||||||||++|++||+.++.+|+.++++.+.. ..|+|...+ .+...+..+.. ...|||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g-~i~~~l~~~~~-----~~~villD 421 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPG-RIIQGLKKAKT-----KNPLFLLD 421 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCc-hHHHHHHHhCc-----CCCEEEEe
Confidence 47999999999999999999999999999998775432 257777643 34445544321 34599999
Q ss_pred CccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhccc
Q 005762 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQD 477 (678)
Q Consensus 398 EIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~ 477 (678)
|||++.+... .+ ..++||++||. .+...+.+....+.++.++++||+|+|..+
T Consensus 422 Eidk~~~~~~-----~~-----~~~aLl~~ld~------~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~----------- 474 (775)
T TIGR00763 422 EIDKIGSSFR-----GD-----PASALLEVLDP------EQNNAFSDHYLDVPFDLSKVIFIATANSID----------- 474 (775)
T ss_pred chhhcCCccC-----CC-----HHHHHHHhcCH------HhcCccccccCCceeccCCEEEEEecCCch-----------
Confidence 9999986421 12 67889999982 122223333345578889999999988421
Q ss_pred CCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHH
Q 005762 478 SSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRL 557 (678)
Q Consensus 478 ~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~ 557 (678)
.+.|+|++||. ++.|++|+.+++.+|++.. +..+..+.
T Consensus 475 --------------------------------------~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~---l~~~~~~~ 512 (775)
T TIGR00763 475 --------------------------------------TIPRPLLDRME-VIELSGYTEEEKLEIAKKY---LIPKALED 512 (775)
T ss_pred --------------------------------------hCCHHHhCCee-EEecCCCCHHHHHHHHHHH---HHHHHHHH
Confidence 27889999995 6799999999999999863 55555444
Q ss_pred HhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 005762 558 FSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 606 (678)
Q Consensus 558 ~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~ 606 (678)
.......+.++++++.+|++ .|....|+|+|++.|++++..++.++..
T Consensus 513 ~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 513 HGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVKLVE 560 (775)
T ss_pred cCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHHHHh
Confidence 33444578899999999999 5999999999999999999999888764
No 18
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.1e-23 Score=232.40 Aligned_cols=246 Identities=23% Similarity=0.349 Sum_probs=201.9
Q ss_pred CCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHH
Q 005762 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (678)
Q Consensus 261 ~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~ 340 (678)
..+....++.||+...|++.+|+.+.+.|.-. +++.. .....++|+||||+|||+
T Consensus 399 n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~--kLrgs-----------------------~qGkIlCf~GPPGVGKTS 453 (906)
T KOG2004|consen 399 NLDLARAKEILDEDHYGMEDVKERILEFIAVG--KLRGS-----------------------VQGKILCFVGPPGVGKTS 453 (906)
T ss_pred hhhHHHHHHhhcccccchHHHHHHHHHHHHHH--hhccc-----------------------CCCcEEEEeCCCCCCccc
Confidence 44566678899999999999999999988522 22111 123679999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccc--------cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccccc
Q 005762 341 LAKTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (678)
Q Consensus 341 LAralA~~l~~~fv~id~s~l~~s--------gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~ 412 (678)
+|+.||+.+|+.|++++...+.+. .|+|..+++.+..+-.-.. ...+++||||||+... ..
T Consensus 454 I~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t------~NPliLiDEvDKlG~g-----~q 522 (906)
T KOG2004|consen 454 IAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT------ENPLILIDEVDKLGSG-----HQ 522 (906)
T ss_pred HHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC------CCceEEeehhhhhCCC-----CC
Confidence 999999999999999998876643 5999998887776654433 3479999999999743 22
Q ss_pred CCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccccc
Q 005762 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA 492 (678)
Q Consensus 413 ~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~ 492 (678)
.| -..+||++|| |+++..+.+++-.|.+|.+.++||||.|..+
T Consensus 523 GD-----PasALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN~id-------------------------- 565 (906)
T KOG2004|consen 523 GD-----PASALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTANVID-------------------------- 565 (906)
T ss_pred CC-----hHHHHHHhcC------hhhccchhhhccccccchhheEEEEeccccc--------------------------
Confidence 33 7889999999 8899999999999999999999999998543
Q ss_pred CCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHH
Q 005762 493 GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKAL 572 (678)
Q Consensus 493 ~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal 572 (678)
. +.|+|+.|+. +|.++.|..+|..+|+.. +|+.+..+........+.++++|+
T Consensus 566 -----t------------------IP~pLlDRME-vIelsGYv~eEKv~IA~~---yLip~a~~~~gl~~e~v~is~~al 618 (906)
T KOG2004|consen 566 -----T------------------IPPPLLDRME-VIELSGYVAEEKVKIAER---YLIPQALKDCGLKPEQVKISDDAL 618 (906)
T ss_pred -----c------------------CChhhhhhhh-eeeccCccHHHHHHHHHH---hhhhHHHHHcCCCHHhcCccHHHH
Confidence 1 5566777774 579999999999999986 688888887777777888999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 005762 573 RVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 607 (678)
Q Consensus 573 ~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~ 607 (678)
..|.++ |..+.|+|.|++-|+.+++.+.+++.+.
T Consensus 619 ~~lI~~-YcrEaGVRnLqk~iekI~Rk~Al~vv~~ 652 (906)
T KOG2004|consen 619 LALIER-YCREAGVRNLQKQIEKICRKVALKVVEG 652 (906)
T ss_pred HHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987 7899999999999999999998776543
No 19
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.90 E-value=1.6e-22 Score=238.22 Aligned_cols=260 Identities=18% Similarity=0.294 Sum_probs=193.5
Q ss_pred CCCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHH
Q 005762 260 DLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKT 339 (678)
Q Consensus 260 ~~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT 339 (678)
+..+..+.++.|++.++|++.+|+.+.+.+.... +. .. .....++|+||||||||
T Consensus 309 ~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~-~~---~~---------------------~~g~~i~l~GppG~GKT 363 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQS-RV---NK---------------------IKGPILCLVGPPGVGKT 363 (784)
T ss_pred ccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHH-hc---cc---------------------CCCceEEEECCCCCCHH
Confidence 3457788999999999999999999988775221 10 00 01357999999999999
Q ss_pred HHHHHHHHHhCCCEEEEecccccc--------ccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccc
Q 005762 340 LLAKTLARHVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (678)
Q Consensus 340 ~LAralA~~l~~~fv~id~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~ 411 (678)
++++.+|+.++.+|+.++++...+ ..|+|...+. +...+..+. ....||||||||++.+...
T Consensus 364 tl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~-~~~~l~~~~-----~~~~villDEidk~~~~~~---- 433 (784)
T PRK10787 364 SLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGK-LIQKMAKVG-----VKNPLFLLDEIDKMSSDMR---- 433 (784)
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcH-HHHHHHhcC-----CCCCEEEEEChhhcccccC----
Confidence 999999999999999999876542 1466665443 333333322 1346999999999987521
Q ss_pred cCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccc
Q 005762 412 SRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMR 491 (678)
Q Consensus 412 ~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~ 491 (678)
. +.+++||++|| +++...+.+.+-.+.+|.++++||||+|+.
T Consensus 434 -g-----~~~~aLlevld------~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-------------------------- 475 (784)
T PRK10787 434 -G-----DPASALLEVLD------PEQNVAFSDHYLEVDYDLSDVMFVATSNSM-------------------------- 475 (784)
T ss_pred -C-----CHHHHHHHHhc------cccEEEEecccccccccCCceEEEEcCCCC--------------------------
Confidence 1 27899999999 333344555666678899999999988742
Q ss_pred cCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHH
Q 005762 492 AGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA 571 (678)
Q Consensus 492 ~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ea 571 (678)
.+.|+|++|+. +|.|.+|+++++.+|++.. |..+..+.....+.++.+++++
T Consensus 476 ------------------------~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~---L~~k~~~~~~l~~~~l~i~~~a 527 (784)
T PRK10787 476 ------------------------NIPAPLLDRME-VIRLSGYTEDEKLNIAKRH---LLPKQIERNALKKGELTVDDSA 527 (784)
T ss_pred ------------------------CCCHHHhccee-eeecCCCCHHHHHHHHHHh---hhHHHHHHhCCCCCeEEECHHH
Confidence 17889999995 6899999999999999974 4433333345566789999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccccC
Q 005762 572 LRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEESVG 625 (678)
Q Consensus 572 l~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~v~ 625 (678)
+++|++ .|...+|||.|+++|++++.+.+.++.... .+..+.|+.+.+.
T Consensus 528 i~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~----~~~~v~v~~~~~~ 576 (784)
T PRK10787 528 IIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLDK----SLKHIEINGDNLH 576 (784)
T ss_pred HHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhcC----CCceeeecHHHHH
Confidence 999998 789999999999999999999988764332 2345666665553
No 20
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=7.1e-22 Score=205.51 Aligned_cols=231 Identities=19% Similarity=0.337 Sum_probs=161.7
Q ss_pred HHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHH
Q 005762 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 268 ~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~ 347 (678)
.++|++ ++|++.+|+.|.+.+... .+.....+.+ . .......|+||+||||||||++|+++|+
T Consensus 2 ~~~l~~-~~Gl~~vk~~i~~~~~~~--~~~~~~~~~g--~------------~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 2 ERELSR-MVGLDEVKALIKEIYAWI--QINEKRKEEG--L------------KTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred hHHHHH-hcChHHHHHHHHHHHHHH--HHHHHHHHcC--C------------CCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 356676 799999999998776422 1111111111 1 1111247899999999999999999998
Q ss_pred Hh-------CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHH
Q 005762 348 HV-------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (678)
Q Consensus 348 ~l-------~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~v 420 (678)
.+ ..+++.++++++. ..|+|+. ...+.++|..+ .++||||||||.|... +....+..+
T Consensus 65 ~l~~~~~~~~~~~v~~~~~~l~-~~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~------~~~~~~~~~ 129 (261)
T TIGR02881 65 LFKEMNVLSKGHLIEVERADLV-GEYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARG------GEKDFGKEA 129 (261)
T ss_pred HHHhcCcccCCceEEecHHHhh-hhhccch-HHHHHHHHHhc-------cCCEEEEechhhhccC------CccchHHHH
Confidence 76 2478889999887 3577876 55566666554 4589999999998642 111223458
Q ss_pred HHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhH
Q 005762 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (678)
Q Consensus 421 q~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~ 500 (678)
++.|++.||.. ..++++|++++..+++.+.
T Consensus 130 i~~Ll~~~e~~---------------------~~~~~vila~~~~~~~~~~----------------------------- 159 (261)
T TIGR02881 130 IDTLVKGMEDN---------------------RNEFVLILAGYSDEMDYFL----------------------------- 159 (261)
T ss_pred HHHHHHHHhcc---------------------CCCEEEEecCCcchhHHHH-----------------------------
Confidence 89999999831 2345777777654433221
Q ss_pred HHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh-
Q 005762 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA- 579 (678)
Q Consensus 501 ~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a- 579 (678)
.+.|.|.+||+..+.|++|+.+++.+|+... .. ...+.++++++.+|++..
T Consensus 160 ---------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~----~~---------~~~~~l~~~a~~~l~~~~~ 211 (261)
T TIGR02881 160 ---------------SLNPGLRSRFPISIDFPDYTVEELMEIAERM----VK---------EREYKLTEEAKWKLREHLY 211 (261)
T ss_pred ---------------hcChHHHhccceEEEECCCCHHHHHHHHHHH----HH---------HcCCccCHHHHHHHHHHHH
Confidence 1678999999999999999999999998852 11 123458999999887642
Q ss_pred ------cCCCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 005762 580 ------TAKNTGARGLRAILESILTEAMYEIPDVK 608 (678)
Q Consensus 580 ------~~~~~GAR~Lr~iIE~il~~a~~~~p~~~ 608 (678)
-....++|.++++++.++.+....+...+
T Consensus 212 ~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~ 246 (261)
T TIGR02881 212 KVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDKS 246 (261)
T ss_pred HHHhccCCCCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 23346699999999999999987765543
No 21
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.88 E-value=2.8e-22 Score=211.47 Aligned_cols=238 Identities=19% Similarity=0.256 Sum_probs=168.2
Q ss_pred CCCHHHHHHhhhhcccCHHHHHHHHHHHHHHH-HHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHH
Q 005762 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNH-YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKT 339 (678)
Q Consensus 261 ~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~-~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT 339 (678)
....+++.+.|++.++|++.+|+.|.+.+... +.+++. +.+ .+ ...+..++||+||||||||
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~---~~g--~~------------~~~~~~~vll~G~pGTGKT 72 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQ---RLG--LA------------SAAPTLHMSFTGNPGTGKT 72 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH---HhC--CC------------cCCCCceEEEEcCCCCCHH
Confidence 34678899999988999999999998876421 112111 111 10 0113468999999999999
Q ss_pred HHHHHHHHHhC-------CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccccc
Q 005762 340 LLAKTLARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (678)
Q Consensus 340 ~LAralA~~l~-------~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~ 412 (678)
++|+++|+.+. .+|+.+++.++.. .|+|.. ...+..++..+ .++|||||||+.+.....
T Consensus 73 ~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~-~~~g~~-~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~----- 138 (284)
T TIGR02880 73 TVALRMAQILHRLGYVRKGHLVSVTRDDLVG-QYIGHT-APKTKEILKRA-------MGGVLFIDEAYYLYRPDN----- 138 (284)
T ss_pred HHHHHHHHHHHHcCCcccceEEEecHHHHhH-hhcccc-hHHHHHHHHHc-------cCcEEEEechhhhccCCC-----
Confidence 99999998873 3799999988874 588876 34455555543 558999999999854311
Q ss_pred CCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccccc
Q 005762 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA 492 (678)
Q Consensus 413 ~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~ 492 (678)
....+..+++.|++.|+.. ..++++|++|+...++.+.
T Consensus 139 ~~~~~~~~~~~Ll~~le~~---------------------~~~~~vI~a~~~~~~~~~~--------------------- 176 (284)
T TIGR02880 139 ERDYGQEAIEILLQVMENQ---------------------RDDLVVILAGYKDRMDSFF--------------------- 176 (284)
T ss_pred ccchHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH---------------------
Confidence 1123345899999999831 1356777777643222211
Q ss_pred CCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHH
Q 005762 493 GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKAL 572 (678)
Q Consensus 493 ~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal 572 (678)
.++|+|.+||+..+.|++|+.+|+.+|+... .++. ...++++++
T Consensus 177 -----------------------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~----l~~~---------~~~l~~~a~ 220 (284)
T TIGR02880 177 -----------------------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLM----LKEQ---------QYRFSAEAE 220 (284)
T ss_pred -----------------------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHH----HHHh---------ccccCHHHH
Confidence 2689999999999999999999999998853 2221 134778888
Q ss_pred HHHHHhh----c-CCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 005762 573 RVIAKKA----T-AKNTGARGLRAILESILTEAMYEIPDV 607 (678)
Q Consensus 573 ~~La~~a----~-~~~~GAR~Lr~iIE~il~~a~~~~p~~ 607 (678)
..+.++. . ....++|.|++++++++......+...
T Consensus 221 ~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 221 EAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 8887752 1 345669999999999999988776544
No 22
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=3.7e-22 Score=210.82 Aligned_cols=237 Identities=19% Similarity=0.244 Sum_probs=163.9
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHH-HHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNH-YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~-~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~ 340 (678)
...+++.+.|++.++|++.+|+.|.+.+... +.+++.. . |.. ...+..|+||+||||||||+
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~---~--g~~------------~~~~~~~ill~G~pGtGKT~ 74 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKN---L--GLT------------SSNPGLHMSFTGSPGTGKTT 74 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH---c--CCC------------CCCCCceEEEECCCCCCHHH
Confidence 4567899999988999999999998876421 1111111 1 110 00124679999999999999
Q ss_pred HHHHHHHHhC-------CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccC
Q 005762 341 LAKTLARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (678)
Q Consensus 341 LAralA~~l~-------~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~ 413 (678)
+|+++|+.+. .+|+.++++++. ..|+|+. +..+..++..+ .++||||||+|.+..... .
T Consensus 75 lAr~la~~~~~~g~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~-----~ 140 (287)
T CHL00181 75 VALKMADILYKLGYIKKGHLLTVTRDDLV-GQYIGHT-APKTKEVLKKA-------MGGVLFIDEAYYLYKPDN-----E 140 (287)
T ss_pred HHHHHHHHHHHcCCCCCCceEEecHHHHH-HHHhccc-hHHHHHHHHHc-------cCCEEEEEccchhccCCC-----c
Confidence 9999999862 368999988877 3477776 33445555443 558999999999864311 1
Q ss_pred CCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccC
Q 005762 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (678)
Q Consensus 414 d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~ 493 (678)
...+.++++.|+++||.. ..++++|++|+...|+.+.
T Consensus 141 ~~~~~e~~~~L~~~me~~---------------------~~~~~vI~ag~~~~~~~~~---------------------- 177 (287)
T CHL00181 141 RDYGSEAIEILLQVMENQ---------------------RDDLVVIFAGYKDRMDKFY---------------------- 177 (287)
T ss_pred cchHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH----------------------
Confidence 123456999999999831 1456788877644332221
Q ss_pred CCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHH
Q 005762 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALR 573 (678)
Q Consensus 494 ~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~ 573 (678)
.++|+|.+||+.+|.|++|+.+++.+|+... .++. ...+++++..
T Consensus 178 ----------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~----l~~~---------~~~l~~~~~~ 222 (287)
T CHL00181 178 ----------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIM----LEEQ---------QYQLTPEAEK 222 (287)
T ss_pred ----------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHH----HHHh---------cCCCChhHHH
Confidence 1579999999999999999999999998853 2211 2235566554
Q ss_pred HHHH----hhcCCCCC-HHHHHHHHHHHHHHHHhcCCCC
Q 005762 574 VIAK----KATAKNTG-ARGLRAILESILTEAMYEIPDV 607 (678)
Q Consensus 574 ~La~----~a~~~~~G-AR~Lr~iIE~il~~a~~~~p~~ 607 (678)
.|.. ......+| +|.+++++++++......+...
T Consensus 223 ~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 223 ALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444 44445566 9999999999999988776554
No 23
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.88 E-value=5.2e-23 Score=201.74 Aligned_cols=166 Identities=39% Similarity=0.562 Sum_probs=127.1
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCC----CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~----~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 399 (678)
+..++||+||+|||||++|++||+.+.. +++.+||+.+.+ +.+....+..++......+...+.+|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 3579999999999999999999999995 999999999985 33335566777777777788888889999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCC
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSS 479 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ 479 (678)
||+++. ...++|++++++|+.||++||+..+.- .....++++|++||||+|+.........+..
T Consensus 78 dKa~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d----------~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~--- 141 (171)
T PF07724_consen 78 DKAHPS---NSGGADVSGEGVQNSLLQLLEGGTLTD----------SYGRTVDTSNIIFIMTSNFGAEEIIDASRSG--- 141 (171)
T ss_dssp GGCSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEE----------TTCCEEEGTTEEEEEEESSSTHHHHHCHHHC---
T ss_pred hhcccc---ccccchhhHHHHHHHHHHHhcccceec----------ccceEEEeCCceEEEecccccchhhhhhccc---
Confidence 999986 456889999999999999999544431 1226899999999999999876554432211
Q ss_pred CCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceE
Q 005762 480 IGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPIL 528 (678)
Q Consensus 480 igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~i 528 (678)
............++++++|.|||++|||.|
T Consensus 142 -------------------~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 -------------------EAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp -------------------TCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred -------------------cccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 000112223345788999999999999975
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.88 E-value=2.9e-22 Score=203.34 Aligned_cols=216 Identities=30% Similarity=0.446 Sum_probs=156.3
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANL-KKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~-~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
+.||||++||+.-+..+. |.. ++.+ ..| .+.||||+||||||||.+|+++|+.+++
T Consensus 121 ddViGqEeAK~kcrli~~--yLe--nPe~Fg~W-------------------APknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 121 DDVIGQEEAKRKCRLIME--YLE--NPERFGDW-------------------APKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred hhhhchHHHHHHHHHHHH--Hhh--ChHHhccc-------------------CcceeEEECCCCccHHHHHHHHhcccCC
Confidence 349999999986654442 221 1111 111 3589999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcc
Q 005762 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (678)
Q Consensus 352 ~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~ 431 (678)
||+.+.+++|.. .|+|.. ...+++++..+.. +.+|||||||+|.+.-+++-.+.-.|+| ++.|+||..|||.
T Consensus 178 p~l~vkat~liG-ehVGdg-ar~Ihely~rA~~----~aPcivFiDE~DAiaLdRryQelRGDVs--EiVNALLTelDgi 249 (368)
T COG1223 178 PLLLVKATELIG-EHVGDG-ARRIHELYERARK----AAPCIVFIDELDAIALDRRYQELRGDVS--EIVNALLTELDGI 249 (368)
T ss_pred ceEEechHHHHH-HHhhhH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhhhhhHHHhcccHH--HHHHHHHHhccCc
Confidence 999999999985 488887 7789999988765 4899999999999999887666666766 4899999999974
Q ss_pred eeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhh
Q 005762 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSD 511 (678)
Q Consensus 432 ~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~ed 511 (678)
.- ...+++|+++|..+|
T Consensus 250 ~e-------------------neGVvtIaaTN~p~~-------------------------------------------- 266 (368)
T COG1223 250 KE-------------------NEGVVTIAATNRPEL-------------------------------------------- 266 (368)
T ss_pred cc-------------------CCceEEEeecCChhh--------------------------------------------
Confidence 32 123577777664331
Q ss_pred hhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHH-
Q 005762 512 LIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR- 590 (678)
Q Consensus 512 Li~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr- 590 (678)
+.|...+||..-|.|.-++.++..+|+.. |.+. .-+.+... +++|++.+ +++..|.++
T Consensus 267 -----LD~aiRsRFEeEIEF~LP~~eEr~~ile~--------y~k~-----~Plpv~~~-~~~~~~~t--~g~SgRdike 325 (368)
T COG1223 267 -----LDPAIRSRFEEEIEFKLPNDEERLEILEY--------YAKK-----FPLPVDAD-LRYLAAKT--KGMSGRDIKE 325 (368)
T ss_pred -----cCHHHHhhhhheeeeeCCChHHHHHHHHH--------HHHh-----CCCccccC-HHHHHHHh--CCCCchhHHH
Confidence 56677788888899999999999998874 3332 22333333 77788765 466667653
Q ss_pred HHHHHHHHHHHhc
Q 005762 591 AILESILTEAMYE 603 (678)
Q Consensus 591 ~iIE~il~~a~~~ 603 (678)
+++...|..++.+
T Consensus 326 kvlK~aLh~Ai~e 338 (368)
T COG1223 326 KVLKTALHRAIAE 338 (368)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 25
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.3e-20 Score=200.09 Aligned_cols=131 Identities=30% Similarity=0.443 Sum_probs=109.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|.++||+.|.+||..... |.+. ...+..++.+||++||||||||+||+++|.+++..|+
T Consensus 214 Iagl~~AK~lL~EAVvlPi~----------------mPe~---F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFF 274 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIW----------------MPEF---FKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFF 274 (491)
T ss_pred hcchHHHHHHHHHHHhhhhh----------------hHHH---HhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEE
Confidence 89999999999999974321 1111 1233446799999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~ 432 (678)
.++.+.++ +.|.|++ ++.++-+|..+... .+++|||||||.|...|++. +-+.+++.+.+.||..|||..
T Consensus 275 NVSsstlt-SKwRGeS-EKlvRlLFemARfy----APStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~ 344 (491)
T KOG0738|consen 275 NVSSSTLT-SKWRGES-EKLVRLLFEMARFY----APSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQ 344 (491)
T ss_pred Eechhhhh-hhhccch-HHHHHHHHHHHHHh----CCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccc
Confidence 99999999 6899999 99999999988764 88999999999999986543 455666789999999999743
No 26
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.4e-21 Score=215.71 Aligned_cols=219 Identities=26% Similarity=0.365 Sum_probs=166.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|-|+|+.|+.|.++|....+ +.......| ..++++||||||||||||++||++|++++.+|+
T Consensus 436 IGGlE~lK~elq~~V~~p~~---~pe~F~r~G---------------i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLK---HPEKFARFG---------------ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhh---chHHHHHhc---------------CCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 66799999999999973322 121111112 124689999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+.+.+|. +.|+|++ |+.++++|+++... .++||||||||.+...|++. .+ .+ ...++++||..|||...
T Consensus 498 svkgpEL~-sk~vGeS-Er~ir~iF~kAR~~----aP~IiFfDEiDsi~~~R~g~-~~-~v-~~RVlsqLLtEmDG~e~- 567 (693)
T KOG0730|consen 498 SVKGPELF-SKYVGES-ERAIREVFRKARQV----APCIIFFDEIDALAGSRGGS-SS-GV-TDRVLSQLLTEMDGLEA- 567 (693)
T ss_pred eccCHHHH-HHhcCch-HHHHHHHHHHHhhc----CCeEEehhhHHhHhhccCCC-cc-ch-HHHHHHHHHHHcccccc-
Confidence 99999999 5799999 99999999998764 78999999999999987632 22 22 35699999999997432
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
.+|+++|.++|..++
T Consensus 568 ------------------~k~V~ViAATNRpd~----------------------------------------------- 582 (693)
T KOG0730|consen 568 ------------------LKNVLVIAATNRPDM----------------------------------------------- 582 (693)
T ss_pred ------------------cCcEEEEeccCChhh-----------------------------------------------
Confidence 256777776664431
Q ss_pred hcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH-HHHHHHHhhcCCCCCHHHHHH
Q 005762 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 515 ~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e-al~~La~~a~~~~~GAR~Lr~ 591 (678)
+.++++ +|||.+|.++.++.+...+|++.. . .++.+.++ -++.|++.. ..+...+|..
T Consensus 583 --ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~--------~-------kkmp~~~~vdl~~La~~T--~g~SGAel~~ 643 (693)
T KOG0730|consen 583 --IDPALLRPGRLDRIIYVPLPDLEARLEILKQC--------A-------KKMPFSEDVDLEELAQAT--EGYSGAEIVA 643 (693)
T ss_pred --cCHHHcCCcccceeEeecCccHHHHHHHHHHH--------H-------hcCCCCccccHHHHHHHh--ccCChHHHHH
Confidence 334444 599999999999999999998842 1 12335455 577888864 3666779999
Q ss_pred HHHHHHHHHHhcCC
Q 005762 592 ILESILTEAMYEIP 605 (678)
Q Consensus 592 iIE~il~~a~~~~p 605 (678)
+.+.....++.+..
T Consensus 644 lCq~A~~~a~~e~i 657 (693)
T KOG0730|consen 644 VCQEAALLALRESI 657 (693)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987744
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.86 E-value=1.3e-20 Score=190.37 Aligned_cols=189 Identities=28% Similarity=0.448 Sum_probs=121.7
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.|++ +|||++++..+...+....+| . ..-.|+|||||||+||||||+.||+.+
T Consensus 22 ~L~e-fiGQ~~l~~~l~i~i~aa~~r-------~-------------------~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 22 SLDE-FIGQEHLKGNLKILIRAAKKR-------G-------------------EALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp SCCC-S-S-HHHHHHHHHHHHHHHCT-------T-------------------S---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred CHHH-ccCcHHHHhhhHHHHHHHHhc-------C-------------------CCcceEEEECCCccchhHHHHHHHhcc
Confidence 4555 699999999987776422100 0 012689999999999999999999999
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 350 ~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
+.+|..+++..+... ..+..++... ..+.||||||||++.+. +|+.|+.+||
T Consensus 75 ~~~~~~~sg~~i~k~--------~dl~~il~~l------~~~~ILFIDEIHRlnk~--------------~qe~LlpamE 126 (233)
T PF05496_consen 75 GVNFKITSGPAIEKA--------GDLAAILTNL------KEGDILFIDEIHRLNKA--------------QQEILLPAME 126 (233)
T ss_dssp T--EEEEECCC--SC--------HHHHHHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHHH
T ss_pred CCCeEeccchhhhhH--------HHHHHHHHhc------CCCcEEEEechhhccHH--------------HHHHHHHHhc
Confidence 999999888665422 2233333322 24579999999999998 9999999999
Q ss_pred cceee-cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcc
Q 005762 430 GTIVN-VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (678)
Q Consensus 430 g~~v~-v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~ 508 (678)
+..+. +-++| +..+.+.++...+.+|.+++-.+
T Consensus 127 d~~idiiiG~g----~~ar~~~~~l~~FTligATTr~g------------------------------------------ 160 (233)
T PF05496_consen 127 DGKIDIIIGKG----PNARSIRINLPPFTLIGATTRAG------------------------------------------ 160 (233)
T ss_dssp CSEEEEEBSSS----SS-BEEEEE----EEEEEESSGC------------------------------------------
T ss_pred cCeEEEEeccc----cccceeeccCCCceEeeeecccc------------------------------------------
Confidence 55443 32332 23456777777777776544211
Q ss_pred hhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 005762 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (678)
Q Consensus 509 ~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a 579 (678)
-+.++|.+||.++..+..|+.+||.+|+... ..-..+.+++++..+||+++
T Consensus 161 -------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~-------------a~~l~i~i~~~~~~~Ia~rs 211 (233)
T PF05496_consen 161 -------LLSSPLRDRFGIVLRLEFYSEEELAKIVKRS-------------ARILNIEIDEDAAEEIARRS 211 (233)
T ss_dssp -------CTSHCCCTTSSEEEE----THHHHHHHHHHC-------------CHCTT-EE-HHHHHHHHHCT
T ss_pred -------ccchhHHhhcceecchhcCCHHHHHHHHHHH-------------HHHhCCCcCHHHHHHHHHhc
Confidence 1677999999999999999999999998852 22456779999999999986
No 28
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.4e-21 Score=204.50 Aligned_cols=177 Identities=28% Similarity=0.405 Sum_probs=136.5
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|=|+++.++.|.++|.-..+ ++.+...+|- .++++||||||||||||+|||++|+..+..|
T Consensus 152 dIGGL~~Qi~EirE~VELPL~---~PElF~~~GI---------------~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF 213 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLK---NPELFEELGI---------------DPPKGVLLYGPPGTGKTLLAKAVANQTDATF 213 (406)
T ss_pred hccCHHHHHHHHHHHhccccc---CHHHHHHcCC---------------CCCCceEeeCCCCCcHHHHHHHHHhccCceE
Confidence 388999999999999974322 2222222222 2468999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh---c
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE---G 430 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE---g 430 (678)
+.+.+++|.+ .|+|+. ...++++|..+... .++||||||||.+..+|...+.+.| +++|..|+++|. |
T Consensus 214 IrvvgSElVq-KYiGEG-aRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gD---rEVQRTmleLL~qlDG 284 (406)
T COG1222 214 IRVVGSELVQ-KYIGEG-ARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGD---REVQRTMLELLNQLDG 284 (406)
T ss_pred EEeccHHHHH-HHhccc-hHHHHHHHHHHhhc----CCeEEEEechhhhhcccccCCCCch---HHHHHHHHHHHHhccC
Confidence 9999999995 699999 88999999988765 8999999999999998876555544 457777777764 4
Q ss_pred ceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchh
Q 005762 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (678)
Q Consensus 431 ~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~e 510 (678)
+- ...|+-+|+++|-.++
T Consensus 285 FD-------------------~~~nvKVI~ATNR~D~------------------------------------------- 302 (406)
T COG1222 285 FD-------------------PRGNVKVIMATNRPDI------------------------------------------- 302 (406)
T ss_pred CC-------------------CCCCeEEEEecCCccc-------------------------------------------
Confidence 21 1345666666664431
Q ss_pred hhhhhcCCcccc--cccceEEecCCcCHHHHHHHHhc
Q 005762 511 DLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 511 dLi~~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
+.|.|+ +|||..|.|+.++++...+|++.
T Consensus 303 ------LDPALLRPGR~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 303 ------LDPALLRPGRFDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred ------cChhhcCCCcccceeecCCCCHHHHHHHHHH
Confidence 333333 89999999999999999999885
No 29
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4e-20 Score=208.95 Aligned_cols=223 Identities=29% Similarity=0.418 Sum_probs=157.5
Q ss_pred ccCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 275 VIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~--rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
|=|.+++|..|...|....+ .+...+++ +.++||||||||||||++||++|.++...
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglr---------------------kRSGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLR---------------------KRSGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhcccc---------------------ccceeEEECCCCCchHHHHHHHHhhceee
Confidence 88999999999999864322 12222222 24899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce
Q 005762 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (678)
Q Consensus 353 fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~ 432 (678)
|+++-.-+|. +.|+|++ |..+++.|++++. +.+||||+||+|.+++.|+..+-+..+.. ++.++||..|||-.
T Consensus 733 FlSVKGPELL-NMYVGqS-E~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMD-RVVSQLLAELDgls 805 (953)
T KOG0736|consen 733 FLSVKGPELL-NMYVGQS-EENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMD-RVVSQLLAELDGLS 805 (953)
T ss_pred EEeecCHHHH-HHHhcch-HHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHH-HHHHHHHHHhhccc
Confidence 9999999999 5699999 8999999999875 59999999999999999876443444443 48888999999632
Q ss_pred eecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhh
Q 005762 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (678)
Q Consensus 433 v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edL 512 (678)
.. +++.+.+|.++|..||
T Consensus 806 ~~-----------------~s~~VFViGATNRPDL--------------------------------------------- 823 (953)
T KOG0736|consen 806 DS-----------------SSQDVFVIGATNRPDL--------------------------------------------- 823 (953)
T ss_pred CC-----------------CCCceEEEecCCCccc---------------------------------------------
Confidence 10 1223333334443332
Q ss_pred hhh-cCCcccccccceEEecCCcCH-HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHH
Q 005762 513 IAY-GLIPEFVGRFPILVSLTALTE-DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (678)
Q Consensus 513 i~~-g~~Pefl~R~~~iv~f~~Lse-eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr 590 (678)
+.. -++| +|||..+.+.+-.. +...+||+ ++.++|+- ..+++ +..||+++-..-+|| .|-
T Consensus 824 LDpALLRP---GRFDKLvyvG~~~d~esk~~vL~----AlTrkFkL---dedVd-------L~eiAk~cp~~~TGA-DlY 885 (953)
T KOG0736|consen 824 LDPALLRP---GRFDKLVYVGPNEDAESKLRVLE----ALTRKFKL---DEDVD-------LVEIAKKCPPNMTGA-DLY 885 (953)
T ss_pred cChhhcCC---CccceeEEecCCccHHHHHHHHH----HHHHHccC---CCCcC-------HHHHHhhCCcCCchh-HHH
Confidence 110 1334 89999888877654 44555655 45544421 12232 678899876666776 677
Q ss_pred HHHHHHHHHHHhcCC
Q 005762 591 AILESILTEAMYEIP 605 (678)
Q Consensus 591 ~iIE~il~~a~~~~p 605 (678)
+++-+.++.|+.+..
T Consensus 886 sLCSdA~l~AikR~i 900 (953)
T KOG0736|consen 886 SLCSDAMLAAIKRTI 900 (953)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777777776543
No 30
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.83 E-value=6.6e-20 Score=196.30 Aligned_cols=168 Identities=26% Similarity=0.386 Sum_probs=126.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
.+++|||||||||||||++||+.++..|..+++.... .+.+++.++.+........+.||||||||++.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 6899999999999999999999999999999997632 5667888888766555567789999999999987
Q ss_pred hccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCc
Q 005762 406 AESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (678)
Q Consensus 406 ~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~ 484 (678)
.|+.||..|| |.+ +||.+++
T Consensus 120 --------------QQD~lLp~vE~G~i------------------------ilIGATT--------------------- 140 (436)
T COG2256 120 --------------QQDALLPHVENGTI------------------------ILIGATT--------------------- 140 (436)
T ss_pred --------------hhhhhhhhhcCCeE------------------------EEEeccC---------------------
Confidence 9999999999 422 3332222
Q ss_pred ccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCce
Q 005762 485 PVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVK 564 (678)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~ 564 (678)
++++..+...|++++. ++.|.+|+.+++.++++.. +...- ....+..
T Consensus 141 --------ENPsF~ln~ALlSR~~-------------------vf~lk~L~~~di~~~l~ra---~~~~~---rgl~~~~ 187 (436)
T COG2256 141 --------ENPSFELNPALLSRAR-------------------VFELKPLSSEDIKKLLKRA---LLDEE---RGLGGQI 187 (436)
T ss_pred --------CCCCeeecHHHhhhhh-------------------eeeeecCCHHHHHHHHHHH---Hhhhh---cCCCccc
Confidence 2233444444444443 6799999999999998862 32221 1123455
Q ss_pred eeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 565 LHFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 565 l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+.++++++++|+..+ +..+|.+-+.+|-+.
T Consensus 188 ~~i~~~a~~~l~~~s---~GD~R~aLN~LE~~~ 217 (436)
T COG2256 188 IVLDEEALDYLVRLS---NGDARRALNLLELAA 217 (436)
T ss_pred ccCCHHHHHHHHHhc---CchHHHHHHHHHHHH
Confidence 679999999999986 777888888887654
No 31
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.1e-20 Score=201.94 Aligned_cols=231 Identities=24% Similarity=0.354 Sum_probs=159.9
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
.+|....+.-.+.|.|.|+||..|.+.|. |.+ .+.+...+|.. -+.+|||+||||||||+|
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVe--fLk--dP~kftrLGGK---------------LPKGVLLvGPPGTGKTlL 353 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVE--FLK--DPTKFTRLGGK---------------LPKGVLLVGPPGTGKTLL 353 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHH--Hhc--CcHHhhhccCc---------------CCCceEEeCCCCCchhHH
Confidence 35666655555669999999999999885 222 22221112211 257899999999999999
Q ss_pred HHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHH
Q 005762 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (678)
Q Consensus 342 AralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq 421 (678)
||++|.+.++||+....++|.+. |||.. .+.++++|.++... .||||||||||.+..+|...... .....+
T Consensus 354 ARAvAGEA~VPFF~~sGSEFdEm-~VGvG-ArRVRdLF~aAk~~----APcIIFIDEiDavG~kR~~~~~~---y~kqTl 424 (752)
T KOG0734|consen 354 ARAVAGEAGVPFFYASGSEFDEM-FVGVG-ARRVRDLFAAAKAR----APCIIFIDEIDAVGGKRNPSDQH---YAKQTL 424 (752)
T ss_pred HHHhhcccCCCeEeccccchhhh-hhccc-HHHHHHHHHHHHhc----CCeEEEEechhhhcccCCccHHH---HHHHHH
Confidence 99999999999999999999865 99999 88999999988654 89999999999998875442211 334588
Q ss_pred HHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcC-HHHHHHhhcccCCCCcCcccccccccCCCchHhH
Q 005762 422 QALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (678)
Q Consensus 422 ~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~-Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~ 500 (678)
++||-.|||+..+ ..|++|.++||.+ |++++
T Consensus 425 NQLLvEmDGF~qN-------------------eGiIvigATNfpe~LD~AL----------------------------- 456 (752)
T KOG0734|consen 425 NQLLVEMDGFKQN-------------------EGIIVIGATNFPEALDKAL----------------------------- 456 (752)
T ss_pred HHHHHHhcCcCcC-------------------CceEEEeccCChhhhhHHh-----------------------------
Confidence 9999999985432 1346666666543 22221
Q ss_pred HHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhc
Q 005762 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (678)
Q Consensus 501 ~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~ 580 (678)
.+| +|||..|..+.++..-..+||..+++.+. ...+++ +..||+- -
T Consensus 457 ----------------~RP---GRFD~~v~Vp~PDv~GR~eIL~~yl~ki~-------~~~~VD-------~~iiARG-T 502 (752)
T KOG0734|consen 457 ----------------TRP---GRFDRHVTVPLPDVRGRTEILKLYLSKIP-------LDEDVD-------PKIIARG-T 502 (752)
T ss_pred ----------------cCC---CccceeEecCCCCcccHHHHHHHHHhcCC-------cccCCC-------HhHhccC-C
Confidence 344 89999999999999999999886422111 111222 2333442 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Q 005762 581 AKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 581 ~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
.++..-+|.++|...-..+..+
T Consensus 503 -~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 503 -PGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred -CCCchHHHHHHHHHHHHHHHhc
Confidence 3444457888887766666443
No 32
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.2e-20 Score=210.81 Aligned_cols=181 Identities=27% Similarity=0.397 Sum_probs=141.5
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|.|+|+||+.|.+.|. | +.++.+...+|+ ..++++||+||||||||+|||++|.+.++||
T Consensus 312 DVAG~deAK~El~E~V~--f--LKNP~~Y~~lGA---------------KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF 372 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVK--F--LKNPEQYQELGA---------------KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 372 (774)
T ss_pred cccCcHHHHHHHHHHHH--H--hcCHHHHHHcCC---------------cCcCceEEECCCCCcHHHHHHHHhcccCCce
Confidence 39999999999999985 2 222222212222 2468999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhc-cccccCCCchhHHHHHHHHHHhcce
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAE-SLNISRDVSGEGVQQALLKMLEGTI 432 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~-~~~~~~d~s~~~vq~~LL~~LEg~~ 432 (678)
+.++++++++. ++|.. ...++.+|..+..+ .|+||||||||.+...+. ....+.+.+.+..+++||..|||..
T Consensus 373 ~svSGSEFvE~-~~g~~-asrvr~lf~~ar~~----aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 373 FSVSGSEFVEM-FVGVG-ASRVRDLFPLARKN----APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred eeechHHHHHH-hcccc-hHHHHHHHHHhhcc----CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 99999999964 77877 78899999988765 899999999999999874 3445777788899999999999853
Q ss_pred eecCCCCcccCCCCCeEEEecCcceEEecCCCcCH-HHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhh
Q 005762 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSD 511 (678)
Q Consensus 433 v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~L-e~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~ed 511 (678)
. +++++|++++|-.++ +.+
T Consensus 447 ~-------------------~~~vi~~a~tnr~d~ld~a----------------------------------------- 466 (774)
T KOG0731|consen 447 T-------------------SKGVIVLAATNRPDILDPA----------------------------------------- 466 (774)
T ss_pred C-------------------CCcEEEEeccCCccccCHH-----------------------------------------
Confidence 2 245677777664431 111
Q ss_pred hhhhcCCcccccccceEEecCCcCHHHHHHHHhch
Q 005762 512 LIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (678)
Q Consensus 512 Li~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ 546 (678)
| ++| +|||..|.+..++.....+|++.+
T Consensus 467 l----lrp---GRfdr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 467 L----LRP---GRFDRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred h----cCC---CccccceeccCCchhhhHHHHHHH
Confidence 1 333 899999999999999999998853
No 33
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.9e-20 Score=201.98 Aligned_cols=221 Identities=26% Similarity=0.382 Sum_probs=158.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|=|+++++.+|..+|....|+- ...+.+|.. .+.+|||+||||||||+||+++|++.+..|+
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~p---d~~k~lGi~---------------~PsGvLL~GPPGCGKTLlAKAVANEag~NFi 574 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRP---DLFKALGID---------------APSGVLLCGPPGCGKTLLAKAVANEAGANFI 574 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCH---HHHHHhCCC---------------CCCceEEeCCCCccHHHHHHHHhhhccCceE
Confidence 7789999999999987554431 111112221 3689999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+-..+|. +.|||++ +..++.+|+.+... .+||||+||||.|.+.|+..+ ..++..+.++||..|||..
T Consensus 575 sVKGPELl-NkYVGES-ErAVR~vFqRAR~s----aPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~-- 643 (802)
T KOG0733|consen 575 SVKGPELL-NKYVGES-ERAVRQVFQRARAS----APCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLE-- 643 (802)
T ss_pred eecCHHHH-HHHhhhH-HHHHHHHHHHhhcC----CCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccc--
Confidence 99999999 5799999 89999999998764 899999999999999876543 3445679999999999732
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
+..++.+|.++|..|+-+-
T Consensus 644 -----------------~R~gV~viaATNRPDiIDp-------------------------------------------- 662 (802)
T KOG0733|consen 644 -----------------ERRGVYVIAATNRPDIIDP-------------------------------------------- 662 (802)
T ss_pred -----------------cccceEEEeecCCCcccch--------------------------------------------
Confidence 2233445555554432100
Q ss_pred hcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH-HHHHHHHhhcCCCCCHHHHHHHH
Q 005762 515 YGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARGLRAIL 593 (678)
Q Consensus 515 ~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e-al~~La~~a~~~~~GAR~Lr~iI 593 (678)
-.++| +|||.++....++.+|...||+. +.+ +.+..++++ -++.|+......+|..-.|..++
T Consensus 663 AiLRP---GRlDk~LyV~lPn~~eR~~ILK~----~tk---------n~k~pl~~dVdl~eia~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 663 AILRP---GRLDKLLYVGLPNAEERVAILKT----ITK---------NTKPPLSSDVDLDEIARNTKCEGFTGADLAALV 726 (802)
T ss_pred hhcCC---CccCceeeecCCCHHHHHHHHHH----Hhc---------cCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence 01444 89999999999999999999984 222 233334333 36777776543444444777777
Q ss_pred HHHHHHHH
Q 005762 594 ESILTEAM 601 (678)
Q Consensus 594 E~il~~a~ 601 (678)
...-.-++
T Consensus 727 reAsi~AL 734 (802)
T KOG0733|consen 727 REASILAL 734 (802)
T ss_pred HHHHHHHH
Confidence 76444443
No 34
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.81 E-value=2e-19 Score=198.89 Aligned_cols=219 Identities=20% Similarity=0.344 Sum_probs=169.6
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEeccccc----cccccccchHHHHHH
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLT----QAGYVGEDVESILYK 377 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~l~----~sgyvG~~~~~~l~~ 377 (678)
.|.|+.|.++++.+..++.+..+||++|++||||.++|++|++... .||+.+||..+. ++..+|+. .+.++.
T Consensus 144 iG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhe-kGAFTG 222 (464)
T COG2204 144 VGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHE-KGAFTG 222 (464)
T ss_pred eecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhccc-ccCcCC
Confidence 5899999999999999999999999999999999999999999884 599999999655 34566665 444555
Q ss_pred HHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcc
Q 005762 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDI 456 (678)
Q Consensus 378 l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNi 456 (678)
......+.++.+.+|+||||||..+... +|..||++|+ +.+..+ |..+..+ + |+
T Consensus 223 A~~~r~G~fE~A~GGTLfLDEI~~mpl~--------------~Q~kLLRvLqe~~~~rv---G~~~~i~-----v---dv 277 (464)
T COG2204 223 AITRRIGRFEQANGGTLFLDEIGEMPLE--------------LQVKLLRVLQEREFERV---GGNKPIK-----V---DV 277 (464)
T ss_pred cccccCcceeEcCCceEEeeccccCCHH--------------HHHHHHHHHHcCeeEec---CCCcccc-----e---ee
Confidence 5555667788899999999999999887 9999999998 555554 3222222 2 44
Q ss_pred eEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcC
Q 005762 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALT 535 (678)
Q Consensus 457 lfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Ls 535 (678)
-+|++++ .+|++.|.++. |+.+|+.|+.+ .+.++||.
T Consensus 278 RiIaaT~-~dL~~~v~~G~-----------------------------------------FReDLyyRLnV~~i~iPpLR 315 (464)
T COG2204 278 RIIAATN-RDLEEEVAAGR-----------------------------------------FREDLYYRLNVVPLRLPPLR 315 (464)
T ss_pred EEEeecC-cCHHHHHHcCC-----------------------------------------cHHHHHhhhccceecCCccc
Confidence 5555554 46777666443 77778888887 47888887
Q ss_pred H--HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 536 E--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 536 e--eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
+ ||+--++.. +++++.+.+. .....|++++++.|..+.| ..|+|+|++++|+.+.-
T Consensus 316 ER~EDIp~L~~h----fl~~~~~~~~--~~~~~~s~~a~~~L~~y~W--PGNVREL~N~ver~~il 373 (464)
T COG2204 316 ERKEDIPLLAEH----FLKRFAAELG--RPPKGFSPEALAALLAYDW--PGNVRELENVVERAVIL 373 (464)
T ss_pred ccchhHHHHHHH----HHHHHHHHcC--CCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHHhc
Confidence 6 777777764 5666666543 2335699999999999876 78899999999998743
No 35
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=1.5e-19 Score=197.56 Aligned_cols=223 Identities=22% Similarity=0.395 Sum_probs=176.5
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccc----cccccccchHHHHHH
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT----QAGYVGEDVESILYK 377 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~----~sgyvG~~~~~~l~~ 377 (678)
.|.|+.|..+.+.++-|+.+..+|||.|++||||..+||+|++.. +.|||.+||..+- ++..+|+. .+.++.
T Consensus 226 IG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHe-KGAFTG 304 (550)
T COG3604 226 IGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHE-KGAFTG 304 (550)
T ss_pred eecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccc-cccccc
Confidence 478899999999999999999999999999999999999999998 5699999999654 45677877 677888
Q ss_pred HHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcc
Q 005762 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDI 456 (678)
Q Consensus 378 l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNi 456 (678)
.+....+.++.+.+|.||||||..|... +|..||++|+ |.+..| |. .+.+.+| +
T Consensus 305 A~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLLRvLQegEieRv---G~-----~r~ikVD---V 359 (550)
T COG3604 305 AINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQEGEIERV---GG-----DRTIKVD---V 359 (550)
T ss_pred chhccCcceeecCCCeEechhhccCCHH--------------HHHHHHHHHhhcceeec---CC-----CceeEEE---E
Confidence 8888888899999999999999999987 9999999998 655555 22 2334443 3
Q ss_pred eEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceE-EecCCcC
Q 005762 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPIL-VSLTALT 535 (678)
Q Consensus 457 lfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~i-v~f~~Ls 535 (678)
-+|+++| .||++.++.+. |..+|+.|++++ +.++||.
T Consensus 360 RiIAATN-RDL~~~V~~G~-----------------------------------------FRaDLYyRLsV~Pl~lPPLR 397 (550)
T COG3604 360 RVIAATN-RDLEEMVRDGE-----------------------------------------FRADLYYRLSVFPLELPPLR 397 (550)
T ss_pred EEEeccc-hhHHHHHHcCc-----------------------------------------chhhhhhcccccccCCCCcc
Confidence 4555554 47888777654 666677777774 6677777
Q ss_pred H--HHHHHHHhchHHHHHHHHHHHHhcCCc-eeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005762 536 E--DQLVKVLTEPKNALGKQYKRLFSMNNV-KLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 605 (678)
Q Consensus 536 e--eeL~~Il~~~ln~L~~q~~~~~~~~gv-~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p 605 (678)
+ +|+.-+.. ++.+++++.+ |. .+.++++|++.|.++.| ..++|+|+++|++.+..+ -...
T Consensus 398 ER~~DIplLA~----~Fle~~~~~~---gr~~l~ls~~Al~~L~~y~w--PGNVRELen~veRavlla-~~~~ 460 (550)
T COG3604 398 ERPEDIPLLAG----YFLEKFRRRL---GRAILSLSAEALELLSSYEW--PGNVRELENVVERAVLLA-GRLT 460 (550)
T ss_pred cCCccHHHHHH----HHHHHHHHhc---CCcccccCHHHHHHHHcCCC--CCcHHHHHHHHHHHHHHh-cccC
Confidence 5 56665555 4566666644 44 78899999999999876 788999999999988877 4443
No 36
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=2.4e-19 Score=198.38 Aligned_cols=217 Identities=20% Similarity=0.361 Sum_probs=165.1
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccc----ccccccccchHHHHHH
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL----TQAGYVGEDVESILYK 377 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l----~~sgyvG~~~~~~l~~ 377 (678)
.|.|+.|..+....+.++.+..+|||.|++||||..+|++|++.. +.||+.+||..+ .++.++|+. .+.++.
T Consensus 248 ig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye-~GAFTG 326 (560)
T COG3829 248 IGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE-KGAFTG 326 (560)
T ss_pred ccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC-Cccccc
Confidence 577788888888888888899999999999999999999999988 569999999964 445667776 444555
Q ss_pred HHHh-hchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCc
Q 005762 378 LLAQ-AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKD 455 (678)
Q Consensus 378 l~~~-a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsN 455 (678)
.... ..+.++.|++|.||||||..|... .|..||++|+ ..+..+ |.....+.+..
T Consensus 327 A~~~GK~GlfE~A~gGTLFLDEIgempl~--------------LQaKLLRVLQEkei~rv---G~t~~~~vDVR------ 383 (560)
T COG3829 327 ASKGGKPGLFELANGGTLFLDEIGEMPLP--------------LQAKLLRVLQEKEIERV---GGTKPIPVDVR------ 383 (560)
T ss_pred cccCCCCcceeeccCCeEEehhhccCCHH--------------HHHHHHHHHhhceEEec---CCCCceeeEEE------
Confidence 4443 567788899999999999999987 9999999998 555555 43333333333
Q ss_pred ceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceE-EecCCc
Q 005762 456 ILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPIL-VSLTAL 534 (678)
Q Consensus 456 ilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~i-v~f~~L 534 (678)
+|.++| .+|++.|++.. |+.+|..|++++ |.++||
T Consensus 384 --IIAATN-~nL~~~i~~G~-----------------------------------------FReDLYYRLNV~~i~iPPL 419 (560)
T COG3829 384 --IIAATN-RNLEKMIAEGT-----------------------------------------FREDLYYRLNVIPITIPPL 419 (560)
T ss_pred --EEeccC-cCHHHHHhcCc-----------------------------------------chhhheeeeceeeecCCCc
Confidence 444333 35777776544 666778888874 778888
Q ss_pred CH--HHHHHHHhchHHHHHHHHHHHHhcCCceee-eCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 535 TE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLH-FTEKALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 535 se--eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~-~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
.+ +|+..++.. ++++|.+.+ +..+. ++++++..|.++.| ..+.|+|+++||+++.
T Consensus 420 ReR~eDI~~L~~~----Fl~k~s~~~---~~~v~~ls~~a~~~L~~y~W--PGNVRELeNviER~v~ 477 (560)
T COG3829 420 RERKEDIPLLAEY----FLDKFSRRY---GRNVKGLSPDALALLLRYDW--PGNVRELENVIERAVN 477 (560)
T ss_pred ccCcchHHHHHHH----HHHHHHHHc---CCCcccCCHHHHHHHHhCCC--CchHHHHHHHHHHHHh
Confidence 75 777777764 555665544 33444 99999999999877 7788999999999875
No 37
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.5e-20 Score=188.26 Aligned_cols=154 Identities=25% Similarity=0.450 Sum_probs=117.6
Q ss_pred ccCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 275 VIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~--rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
|.|++.||++|.++|....+ .+.... ..+++.|||+|||||||++||+++|.+.+..
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGk---------------------R~PwrgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGK---------------------RKPWRGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCC---------------------CCcceeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 89999999999999974433 222111 1246899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce
Q 005762 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (678)
Q Consensus 353 fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~ 432 (678)
|++++.++|+ +.|+|++ ++.+..+|+.++.+ .++||||||||.++..++..+ ..+.+.+...||-.|.|.-
T Consensus 194 FFSvSSSDLv-SKWmGES-EkLVknLFemARe~----kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 194 FFSVSSSDLV-SKWMGES-EKLVKNLFEMAREN----KPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred eEEeehHHHH-HHHhccH-HHHHHHHHHHHHhc----CCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhccc
Confidence 9999999999 6799999 99999999988765 899999999999987654422 2333557777888887521
Q ss_pred eecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhc
Q 005762 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERR 475 (678)
Q Consensus 433 v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~ 475 (678)
++....+++..+||.++ |+.+|++|.
T Consensus 265 ----------~d~~gvLVLgATNiPw~-------LDsAIRRRF 290 (439)
T KOG0739|consen 265 ----------NDNDGVLVLGATNIPWV-------LDSAIRRRF 290 (439)
T ss_pred ----------cCCCceEEEecCCCchh-------HHHHHHHHh
Confidence 12334567777777665 455565443
No 38
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.77 E-value=1.4e-17 Score=187.34 Aligned_cols=217 Identities=21% Similarity=0.298 Sum_probs=150.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|.|++.+|+.|.......-......+ + ..+.++||+||||||||++|+++|+.++.+|
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~g--------------------l-~~pkGILL~GPpGTGKTllAkaiA~e~~~~~ 287 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYG--------------------L-PTPRGLLLVGIQGTGKSLTAKAIANDWQLPL 287 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcC--------------------C-CCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 389999999988764421111110001 0 1357899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.++++.+. .+|+|++ +..++++|..+.. ..++||||||||++...+... +.......+...|+..|++.
T Consensus 288 ~~l~~~~l~-~~~vGes-e~~l~~~f~~A~~----~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~~-- 357 (489)
T CHL00195 288 LRLDVGKLF-GGIVGES-ESRMRQMIRIAEA----LSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSEK-- 357 (489)
T ss_pred EEEEhHHhc-ccccChH-HHHHHHHHHHHHh----cCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhcC--
Confidence 999999887 5699998 7788999876543 478999999999987643221 11112245777788887631
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
..++++|+|+|..+
T Consensus 358 -------------------~~~V~vIaTTN~~~----------------------------------------------- 371 (489)
T CHL00195 358 -------------------KSPVFVVATANNID----------------------------------------------- 371 (489)
T ss_pred -------------------CCceEEEEecCChh-----------------------------------------------
Confidence 13456666666331
Q ss_pred hhcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 514 AYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 514 ~~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.|+|+ +|||.++.++.++.++..+|++.. ++++ .. ....+..++.|++.+ .++...+|++
T Consensus 372 --~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~----l~~~-------~~-~~~~~~dl~~La~~T--~GfSGAdI~~ 435 (489)
T CHL00195 372 --LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIH----LQKF-------RP-KSWKKYDIKKLSKLS--NKFSGAEIEQ 435 (489)
T ss_pred --hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHH----Hhhc-------CC-CcccccCHHHHHhhc--CCCCHHHHHH
Confidence 1455665 599999999999999999999853 1111 10 012234477888865 4777888988
Q ss_pred HHHHHHHHHHhc
Q 005762 592 ILESILTEAMYE 603 (678)
Q Consensus 592 iIE~il~~a~~~ 603 (678)
++...+..++.+
T Consensus 436 lv~eA~~~A~~~ 447 (489)
T CHL00195 436 SIIEAMYIAFYE 447 (489)
T ss_pred HHHHHHHHHHHc
Confidence 888877766643
No 39
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.77 E-value=3.2e-18 Score=180.51 Aligned_cols=214 Identities=22% Similarity=0.295 Sum_probs=150.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC---EEEEeccccccccccccchHHHHHHHHHhhchhH-hhhcCcEEEEcCccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP---FVIADATTLTQAGYVGEDVESILYKLLAQAEFNV-EAAQQGMVYIDEVDK 401 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~---fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v-~~a~~gILfIDEIDk 401 (678)
..++||||||||||+||+.|+.-...+ |++++++.-. ...++.+|+++.... .....+||||||||+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 579999999999999999999988765 8999887643 345666776654332 234678999999999
Q ss_pred hhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCC
Q 005762 402 ITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (678)
Q Consensus 402 l~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~i 480 (678)
+.+. .|+.||..+| |. |+||-+++
T Consensus 234 FNks--------------QQD~fLP~VE~G~------------------------I~lIGATT----------------- 258 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVENGD------------------------ITLIGATT----------------- 258 (554)
T ss_pred hhhh--------------hhhcccceeccCc------------------------eEEEeccc-----------------
Confidence 9887 9999999998 42 23442221
Q ss_pred CcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhc
Q 005762 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (678)
Q Consensus 481 gF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~ 560 (678)
++.+++ ++..|++|+. ++.+.+|..+++..||...++.|.+.-+..-..
T Consensus 259 ------------ENPSFq------------------ln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l 307 (554)
T KOG2028|consen 259 ------------ENPSFQ------------------LNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPL 307 (554)
T ss_pred ------------CCCccc------------------hhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCC
Confidence 123333 3444555554 568999999999999998777666432221122
Q ss_pred CCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccccCCCCCCCCcceeecCC
Q 005762 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEESVGSVDAPGCGGKILRGE 640 (678)
Q Consensus 561 ~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~v~~~~~~~~~~k~l~~~ 640 (678)
.+..+.+++.++++|+..+ -..||---+.+|-.+...+...-.. +.++++.++|+..-+.. +++|+.
T Consensus 308 ~n~s~~ve~siidyla~ls---dGDaR~aLN~Lems~~m~~tr~g~~-------~~~~lSidDvke~lq~s---~~~YDr 374 (554)
T KOG2028|consen 308 PNSSMFVEDSIIDYLAYLS---DGDARAALNALEMSLSMFCTRSGQS-------SRVLLSIDDVKEGLQRS---HILYDR 374 (554)
T ss_pred CCcchhhhHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhhcCCc-------ccceecHHHHHHHHhhc---cceecc
Confidence 3334568999999999986 5568877788887765444432221 57888888888765554 688888
Q ss_pred chHHHHH
Q 005762 641 GALERYL 647 (678)
Q Consensus 641 ~~~~~~~ 647 (678)
...+||=
T Consensus 375 ~Ge~HYn 381 (554)
T KOG2028|consen 375 AGEEHYN 381 (554)
T ss_pred cchhHHH
Confidence 8888873
No 40
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.5e-18 Score=188.59 Aligned_cols=180 Identities=29% Similarity=0.419 Sum_probs=134.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
+=|.+.....|.+.|. | +.+......+|. .+++++||+||||||||+||++||+++++||+
T Consensus 192 iGG~d~~~~el~~li~-~---i~~Pe~~~~lGv---------------~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~ 252 (802)
T KOG0733|consen 192 IGGLDKTLAELCELII-H---IKHPEVFSSLGV---------------RPPRGVLLHGPPGCGKTSLANAIAGELGVPFL 252 (802)
T ss_pred ccChHHHHHHHHHHHH-H---hcCchhHhhcCC---------------CCCCceeeeCCCCccHHHHHHHHhhhcCCceE
Confidence 6889999888888775 2 222222111222 35699999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+++.++. +|+.|++ ++.++++|.++..+ .+|||||||||.+.++|+.. +++ ..+.+..+||..||+-...
T Consensus 253 ~isApeiv-SGvSGES-EkkiRelF~~A~~~----aPcivFiDeIDAI~pkRe~a--qre-MErRiVaQLlt~mD~l~~~ 323 (802)
T KOG0733|consen 253 SISAPEIV-SGVSGES-EKKIRELFDQAKSN----APCIVFIDEIDAITPKREEA--QRE-MERRIVAQLLTSMDELSNE 323 (802)
T ss_pred eecchhhh-cccCccc-HHHHHHHHHHHhcc----CCeEEEeecccccccchhhH--HHH-HHHHHHHHHHHhhhccccc
Confidence 99999999 7899999 89999999998765 89999999999999987652 223 3346888999999953221
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcC-HHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~-Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
..++..+++|.++|..| |+..++
T Consensus 324 ---------------~~~g~~VlVIgATnRPDslDpaLR----------------------------------------- 347 (802)
T KOG0733|consen 324 ---------------KTKGDPVLVIGATNRPDSLDPALR----------------------------------------- 347 (802)
T ss_pred ---------------ccCCCCeEEEecCCCCcccCHHHh-----------------------------------------
Confidence 01223456666555332 222221
Q ss_pred hhcCCcccccccceEEecCCcCHHHHHHHHhc
Q 005762 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 514 ~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
=.+|||.-|.+.-+++....+||..
T Consensus 348 -------RaGRFdrEI~l~vP~e~aR~~IL~~ 372 (802)
T KOG0733|consen 348 -------RAGRFDREICLGVPSETAREEILRI 372 (802)
T ss_pred -------ccccccceeeecCCchHHHHHHHHH
Confidence 1489999999999999999999884
No 41
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.76 E-value=1.9e-17 Score=187.39 Aligned_cols=182 Identities=26% Similarity=0.338 Sum_probs=129.2
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.+++ |+|++.+|+.|.+.+.- ++ +.......| ...+.++||+||||||||++|++||+.+
T Consensus 53 ~~~d-i~g~~~~k~~l~~~~~~-l~---~~~~~~~~g---------------~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 53 TFKD-VAGIDEAKEELMEIVDF-LK---NPSKFTKLG---------------AKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CHHH-hCCHHHHHHHHHHHHHH-HH---CHHHHHhcC---------------CCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 3444 79999999999887752 11 111000001 1124789999999999999999999999
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 350 ~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
+.+|+.++++++.. .|+|.. .+.++.+|..+.. ..++||||||||.+...+.....+.+.....+++.||..|+
T Consensus 113 ~~~~~~i~~~~~~~-~~~g~~-~~~l~~~f~~a~~----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d 186 (495)
T TIGR01241 113 GVPFFSISGSDFVE-MFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 186 (495)
T ss_pred CCCeeeccHHHHHH-HHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhc
Confidence 99999999998874 467776 6778888877643 37899999999999887554322333444568888898888
Q ss_pred cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcch
Q 005762 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (678)
Q Consensus 430 g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~ 509 (678)
+.. ...++++|+++|..+
T Consensus 187 ~~~-------------------~~~~v~vI~aTn~~~------------------------------------------- 204 (495)
T TIGR01241 187 GFG-------------------TNTGVIVIAATNRPD------------------------------------------- 204 (495)
T ss_pred ccc-------------------CCCCeEEEEecCChh-------------------------------------------
Confidence 521 123456676666432
Q ss_pred hhhhhhcCCcccc--cccceEEecCCcCHHHHHHHHhc
Q 005762 510 SDLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 510 edLi~~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
.+.|.|+ +|||..+.++.++.++..+|++.
T Consensus 205 ------~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~ 236 (495)
T TIGR01241 205 ------VLDPALLRPGRFDRQVVVDLPDIKGREEILKV 236 (495)
T ss_pred ------hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHH
Confidence 0334444 59999999999999999999875
No 42
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=8.2e-18 Score=173.40 Aligned_cols=189 Identities=29% Similarity=0.441 Sum_probs=140.7
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.|++| |||+++|+.|...+...-.| . ...-|+||+||||.||||||..||+++
T Consensus 24 ~l~ef-iGQ~~vk~~L~ifI~AAk~r-------~-------------------e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 24 TLDEF-IGQEKVKEQLQIFIKAAKKR-------G-------------------EALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred cHHHh-cChHHHHHHHHHHHHHHHhc-------C-------------------CCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 45665 99999999999988633111 1 013799999999999999999999999
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 350 ~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
++.+-..+...+..+| .+..++..-. .+-||||||||++.+. +-..|..+||
T Consensus 77 gvn~k~tsGp~leK~g--------DlaaiLt~Le------~~DVLFIDEIHrl~~~--------------vEE~LYpaME 128 (332)
T COG2255 77 GVNLKITSGPALEKPG--------DLAAILTNLE------EGDVLFIDEIHRLSPA--------------VEEVLYPAME 128 (332)
T ss_pred cCCeEecccccccChh--------hHHHHHhcCC------cCCeEEEehhhhcChh--------------HHHHhhhhhh
Confidence 9999888877766432 2333332221 3469999999999987 8889999999
Q ss_pred cceeecC-CCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcc
Q 005762 430 GTIVNVP-EKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (678)
Q Consensus 430 g~~v~v~-~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~ 508 (678)
+..+.+- ++ .+..+.+.++...+.+|-+++-.+
T Consensus 129 Df~lDI~IG~----gp~Arsv~ldLppFTLIGATTr~G------------------------------------------ 162 (332)
T COG2255 129 DFRLDIIIGK----GPAARSIRLDLPPFTLIGATTRAG------------------------------------------ 162 (332)
T ss_pred heeEEEEEcc----CCccceEeccCCCeeEeeeccccc------------------------------------------
Confidence 8777652 22 233456777777777775443221
Q ss_pred hhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 005762 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (678)
Q Consensus 509 ~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a 579 (678)
.+..+|..||.++..+.-|+.+||.+|+... .+ ...+.+++++...||+++
T Consensus 163 -------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~--------a~-----~l~i~i~~~~a~eIA~rS 213 (332)
T COG2255 163 -------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRS--------AK-----ILGIEIDEEAALEIARRS 213 (332)
T ss_pred -------cccchhHHhcCCeeeeecCCHHHHHHHHHHH--------HH-----HhCCCCChHHHHHHHHhc
Confidence 1566899999999999999999999998852 12 345669999999999986
No 43
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.9e-17 Score=185.60 Aligned_cols=220 Identities=26% Similarity=0.335 Sum_probs=159.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
+.|.+.+|+.+.+++...+++...-.. . ...++.++||+||||||||+||+++|..++.+|+
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~---~---------------~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi 305 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRK---L---------------GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFI 305 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHh---c---------------CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEE
Confidence 678999999999999755443321100 0 0012468999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++.+++. +.|+|+. ++.++.+|..+.. ..++||||||||++.+.+... .+.+...+.+.||..|+|..
T Consensus 306 ~v~~~~l~-sk~vGes-ek~ir~~F~~A~~----~~p~iiFiDEiDs~~~~r~~~---~~~~~~r~~~~lL~~~d~~e-- 374 (494)
T COG0464 306 SVKGSELL-SKWVGES-EKNIRELFEKARK----LAPSIIFIDEIDSLASGRGPS---EDGSGRRVVGQLLTELDGIE-- 374 (494)
T ss_pred EeeCHHHh-ccccchH-HHHHHHHHHHHHc----CCCcEEEEEchhhhhccCCCC---CchHHHHHHHHHHHHhcCCC--
Confidence 99999888 6799999 9999999998874 488999999999999876542 22233579999999998522
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
..+++++|.++|..+
T Consensus 375 -----------------~~~~v~vi~aTN~p~------------------------------------------------ 389 (494)
T COG0464 375 -----------------KAEGVLVIAATNRPD------------------------------------------------ 389 (494)
T ss_pred -----------------ccCceEEEecCCCcc------------------------------------------------
Confidence 223345555555332
Q ss_pred hcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCcee-eeCHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL-HFTEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 515 ~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l-~~t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.|+++. |||.++.+++++.++..+|++..+. .... ...+-.++.|++.. .++-...+..
T Consensus 390 -~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~-------------~~~~~~~~~~~~~~l~~~t--~~~sgadi~~ 453 (494)
T COG0464 390 -DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR-------------DKKPPLAEDVDLEELAEIT--EGYSGADIAA 453 (494)
T ss_pred -ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc-------------ccCCcchhhhhHHHHHHHh--cCCCHHHHHH
Confidence 13445555 9999999999999999999885311 1111 12344456666632 3455668888
Q ss_pred HHHHHHHHHHhcC
Q 005762 592 ILESILTEAMYEI 604 (678)
Q Consensus 592 iIE~il~~a~~~~ 604 (678)
+++.....++.+.
T Consensus 454 i~~ea~~~~~~~~ 466 (494)
T COG0464 454 LVREAALEALREA 466 (494)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888765
No 44
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=9e-18 Score=169.94 Aligned_cols=230 Identities=28% Similarity=0.458 Sum_probs=158.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|-|.+..++.+.+.+.-..+ ++.+...+|- ..+.++||+||||||||+||+++|....+.|
T Consensus 148 MiGgLd~QIkeIkEVIeLPvK---HPELF~aLGI---------------aQPKGvlLygppgtGktLlaraVahht~c~f 209 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVK---HPELFEALGI---------------AQPKGVLLYGPPGTGKTLLARAVAHHTDCTF 209 (404)
T ss_pred HhccHHHHHHHHHHHHhcccc---CHHHHHhcCC---------------CCCcceEEecCCCCchhHHHHHHHhhcceEE
Confidence 467889999999888863211 2211111111 1358999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh---c
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE---G 430 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE---g 430 (678)
+.++.++|.+ .|+|+. ...++++|..+... .++|||.||||.+...+...+.+.| .++|..+|++|. |
T Consensus 210 irvsgselvq-k~igeg-srmvrelfvmareh----apsiifmdeidsigs~r~e~~~ggd---sevqrtmlellnqldg 280 (404)
T KOG0728|consen 210 IRVSGSELVQ-KYIGEG-SRMVRELFVMAREH----APSIIFMDEIDSIGSSRVESGSGGD---SEVQRTMLELLNQLDG 280 (404)
T ss_pred EEechHHHHH-HHhhhh-HHHHHHHHHHHHhc----CCceEeeecccccccccccCCCCcc---HHHHHHHHHHHHhccc
Confidence 9999999995 699998 78899999888765 7899999999999988766555544 347777777664 4
Q ss_pred ceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCH-HHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcch
Q 005762 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (678)
Q Consensus 431 ~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~L-e~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~ 509 (678)
+ -.+.||-+|+++|..|+ +.+
T Consensus 281 f-------------------eatknikvimatnridild~a--------------------------------------- 302 (404)
T KOG0728|consen 281 F-------------------EATKNIKVIMATNRIDILDPA--------------------------------------- 302 (404)
T ss_pred c-------------------ccccceEEEEeccccccccHh---------------------------------------
Confidence 2 25677888887775442 100
Q ss_pred hhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHH
Q 005762 510 SDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGL 589 (678)
Q Consensus 510 edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~L 589 (678)
-+.| +|+|.-|.|++++++...+|++..-. ++--..|++ ++.||++ +....|| ++
T Consensus 303 ------llrp---gridrkiefp~p~e~ar~~ilkihsr-------kmnl~rgi~-------l~kiaek-m~gasga-ev 357 (404)
T KOG0728|consen 303 ------LLRP---GRIDRKIEFPPPNEEARLDILKIHSR-------KMNLTRGIN-------LRKIAEK-MPGASGA-EV 357 (404)
T ss_pred ------hcCC---CcccccccCCCCCHHHHHHHHHHhhh-------hhchhcccC-------HHHHHHh-CCCCccc-hh
Confidence 0333 79999999999999999999885311 111122443 5667776 4344444 34
Q ss_pred HHHHHHHHHHH-HhcCCCCCCCCCCcceEEEcccccC
Q 005762 590 RAILESILTEA-MYEIPDVKTGSDGVDAVVVDEESVG 625 (678)
Q Consensus 590 r~iIE~il~~a-~~~~p~~~~~~~~i~~v~v~~e~v~ 625 (678)
+.+ |.++ ||.+-+. .|.|+.|+++
T Consensus 358 k~v----cteagm~alrer--------rvhvtqedfe 382 (404)
T KOG0728|consen 358 KGV----CTEAGMYALRER--------RVHVTQEDFE 382 (404)
T ss_pred hhh----hhhhhHHHHHHh--------hccccHHHHH
Confidence 443 3333 4444333 5777776654
No 45
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=3.2e-17 Score=193.54 Aligned_cols=221 Identities=23% Similarity=0.346 Sum_probs=158.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|.|++.+|+.|.+.+...++. .......+ ...+.++||+||||||||++|+++|+.++.+|+
T Consensus 455 i~g~~~~k~~l~~~v~~~~~~---~~~~~~~g---------------~~~~~giLL~GppGtGKT~lakalA~e~~~~fi 516 (733)
T TIGR01243 455 IGGLEEVKQELREAVEWPLKH---PEIFEKMG---------------IRPPKGVLLFGPPGTGKTLLAKAVATESGANFI 516 (733)
T ss_pred cccHHHHHHHHHHHHHhhhhC---HHHHHhcC---------------CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 899999999999988633221 10000000 113478999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++++++. +.|+|++ +..++.+|..+.. ..++||||||||.+.+.++... .......+.+.||..|+|..
T Consensus 517 ~v~~~~l~-~~~vGes-e~~i~~~f~~A~~----~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~-- 586 (733)
T TIGR01243 517 AVRGPEIL-SKWVGES-EKAIREIFRKARQ----AAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQ-- 586 (733)
T ss_pred EEehHHHh-hcccCcH-HHHHHHHHHHHHh----cCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhccc--
Confidence 99999987 4699998 7889999987654 4789999999999988654221 11123468889999998621
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++++|+++|..+
T Consensus 587 -----------------~~~~v~vI~aTn~~~------------------------------------------------ 601 (733)
T TIGR01243 587 -----------------ELSNVVVIAATNRPD------------------------------------------------ 601 (733)
T ss_pred -----------------CCCCEEEEEeCCChh------------------------------------------------
Confidence 234667777776432
Q ss_pred hcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHH
Q 005762 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (678)
Q Consensus 515 ~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~i 592 (678)
.+.|.++ +||+.++.++.++.++..+|++.. . .+..+. ++..++.|++.+ .++....|+.+
T Consensus 602 -~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~----~---------~~~~~~-~~~~l~~la~~t--~g~sgadi~~~ 664 (733)
T TIGR01243 602 -ILDPALLRPGRFDRLILVPPPDEEARKEIFKIH----T---------RSMPLA-EDVDLEELAEMT--EGYTGADIEAV 664 (733)
T ss_pred -hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHH----h---------cCCCCC-ccCCHHHHHHHc--CCCCHHHHHHH
Confidence 1445555 599999999999999999998631 0 111111 122367788764 46677889999
Q ss_pred HHHHHHHHHhcCC
Q 005762 593 LESILTEAMYEIP 605 (678)
Q Consensus 593 IE~il~~a~~~~p 605 (678)
+......++.+..
T Consensus 665 ~~~A~~~a~~~~~ 677 (733)
T TIGR01243 665 CREAAMAALRESI 677 (733)
T ss_pred HHHHHHHHHHHHh
Confidence 9888888877643
No 46
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.74 E-value=6.1e-17 Score=178.20 Aligned_cols=221 Identities=24% Similarity=0.312 Sum_probs=148.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|.|++.+|+.|.+++...+..- ......|. .++.++||+||||||||++|+++|+.++.+|+
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~---~~~~~~Gl---------------~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi 208 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCP---ELYEQIGI---------------DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI 208 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCH---HHHHhcCC---------------CCCceEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 8999999999999987443321 10000111 13588999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+.++++.. .|+|+. ...+..+|..+.. ..++||||||||.+...+.+...+.+.....+...||..|++..
T Consensus 209 ~i~~s~l~~-k~~ge~-~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~-- 280 (398)
T PTZ00454 209 RVVGSEFVQ-KYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD-- 280 (398)
T ss_pred EEehHHHHH-Hhcchh-HHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC--
Confidence 999988863 588877 6678888876543 47899999999999876543332323222334445555555311
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++.+|+++|..+
T Consensus 281 -----------------~~~~v~VI~aTN~~d------------------------------------------------ 295 (398)
T PTZ00454 281 -----------------QTTNVKVIMATNRAD------------------------------------------------ 295 (398)
T ss_pred -----------------CCCCEEEEEecCCch------------------------------------------------
Confidence 123566777666321
Q ss_pred hcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHH
Q 005762 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (678)
Q Consensus 515 ~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~i 592 (678)
.+.|.++ +||+..|.|+.++.++...|++.. ... .+..- +--+..|+... .++....|+.+
T Consensus 296 -~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~----~~~-------~~l~~---dvd~~~la~~t--~g~sgaDI~~l 358 (398)
T PTZ00454 296 -TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTI----TSK-------MNLSE---EVDLEDFVSRP--EKISAADIAAI 358 (398)
T ss_pred -hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHH----Hhc-------CCCCc---ccCHHHHHHHc--CCCCHHHHHHH
Confidence 1444444 599999999999999999988742 111 11111 11245666653 46777889998
Q ss_pred HHHHHHHHHhc
Q 005762 593 LESILTEAMYE 603 (678)
Q Consensus 593 IE~il~~a~~~ 603 (678)
+......++.+
T Consensus 359 ~~eA~~~A~r~ 369 (398)
T PTZ00454 359 CQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHc
Confidence 88887777754
No 47
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.74 E-value=3.8e-17 Score=175.88 Aligned_cols=202 Identities=21% Similarity=0.345 Sum_probs=137.0
Q ss_pred cccCCcEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEeccccccc----cccccchHHHHHHHHHhhchhHhhhcCcEE
Q 005762 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQGMV 394 (678)
Q Consensus 322 ~~~~~~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~l~~s----gyvG~~~~~~l~~l~~~a~~~v~~a~~gIL 394 (678)
+....+|||+|++||||+++|++|+.... .||+.+||..+.+. ..+|.. ...+........+.+..+.+|+|
T Consensus 19 a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~-~g~~~ga~~~~~G~~~~a~gGtL 97 (329)
T TIGR02974 19 APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHE-AGAFTGAQKRHQGRFERADGGTL 97 (329)
T ss_pred hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccc-cccccCcccccCCchhhCCCCEE
Confidence 34468899999999999999999998774 69999999976531 111111 00000001112334666788999
Q ss_pred EEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHh
Q 005762 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISE 473 (678)
Q Consensus 395 fIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~ 473 (678)
|||||+.|... +|..|+.+|+ +....+ |.. ..-..++.+|++++. ++++.+.
T Consensus 98 ~Ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~---g~~--------~~~~~~~RiI~at~~-~l~~~~~- 150 (329)
T TIGR02974 98 FLDELATASLL--------------VQEKLLRVIEYGEFERV---GGS--------QTLQVDVRLVCATNA-DLPALAA- 150 (329)
T ss_pred EeCChHhCCHH--------------HHHHHHHHHHcCcEEec---CCC--------ceeccceEEEEechh-hHHHHhh-
Confidence 99999999987 9999999998 433322 111 112245667776652 2333222
Q ss_pred hcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCH--HHHHHHHhchHHHH
Q 005762 474 RRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTE--DQLVKVLTEPKNAL 550 (678)
Q Consensus 474 r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Lse--eeL~~Il~~~ln~L 550 (678)
+..|.++|+.||.. .|.++||.+ +|+..++.. +
T Consensus 151 ----------------------------------------~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~----f 186 (329)
T TIGR02974 151 ----------------------------------------EGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEH----F 186 (329)
T ss_pred ----------------------------------------cCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHH----H
Confidence 12377888999965 799999994 788887775 3
Q ss_pred HHHHHHHHhcCCce--eeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 005762 551 GKQYKRLFSMNNVK--LHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (678)
Q Consensus 551 ~~q~~~~~~~~gv~--l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a 600 (678)
+.++...+ +.. ..|++++++.|..+.| ..+.|+|+++|++++...
T Consensus 187 l~~~~~~~---~~~~~~~ls~~a~~~L~~y~W--PGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 187 AIRMAREL---GLPLFPGFTPQAREQLLEYHW--PGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHh---CCCCCCCcCHHHHHHHHhCCC--CchHHHHHHHHHHHHHhC
Confidence 44444432 333 4799999999999877 778899999999987643
No 48
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.73 E-value=8.1e-17 Score=177.08 Aligned_cols=222 Identities=26% Similarity=0.364 Sum_probs=148.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|.|.+.+++.|.+.+...++.- ......|. .++.++||+||||||||++|+++|+.++.+|
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~---~~~~~~g~---------------~~p~gvLL~GppGtGKT~lAkaia~~~~~~~ 193 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKP---ELFEEVGI---------------EPPKGVLLYGPPGTGKTLLAKAVAHETNATF 193 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCH---HHHHhcCC---------------CCCCceEEECCCCCChHHHHHHHHHHhCCCE
Confidence 48999999999999886433211 10000111 1357899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.++++++. ..|+|+. +..+..+|..+.. ..++||||||||.+...+.....+. ...++..|++++....
T Consensus 194 i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~---~~~~~~~l~~lL~~ld- 263 (389)
T PRK03992 194 IRVVGSELV-QKFIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSG---DREVQRTLMQLLAEMD- 263 (389)
T ss_pred EEeehHHHh-Hhhccch-HHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCc---cHHHHHHHHHHHHhcc-
Confidence 999999987 4588877 6778888876543 3678999999999987644322111 2235666666654100
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
+ .-...++.+|+++|..+
T Consensus 264 -----~----------~~~~~~v~VI~aTn~~~----------------------------------------------- 281 (389)
T PRK03992 264 -----G----------FDPRGNVKIIAATNRID----------------------------------------------- 281 (389)
T ss_pred -----c----------cCCCCCEEEEEecCChh-----------------------------------------------
Confidence 0 00123566777666321
Q ss_pred hhcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 514 AYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 514 ~~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.+.++ +||+..|.|++++.++..+|++.. . + +..+. .+..+..|++.+ .++..+.|+.
T Consensus 282 --~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~----~----~-----~~~~~-~~~~~~~la~~t--~g~sgadl~~ 343 (389)
T PRK03992 282 --ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIH----T----R-----KMNLA-DDVDLEELAELT--EGASGADLKA 343 (389)
T ss_pred --hCCHHHcCCccCceEEEECCCCHHHHHHHHHHH----h----c-----cCCCC-CcCCHHHHHHHc--CCCCHHHHHH
Confidence 0334444 599999999999999999998742 1 1 11111 112256677764 4777789998
Q ss_pred HHHHHHHHHHhc
Q 005762 592 ILESILTEAMYE 603 (678)
Q Consensus 592 iIE~il~~a~~~ 603 (678)
++..+...++.+
T Consensus 344 l~~eA~~~a~~~ 355 (389)
T PRK03992 344 ICTEAGMFAIRD 355 (389)
T ss_pred HHHHHHHHHHHc
Confidence 888877777654
No 49
>CHL00176 ftsH cell division protein; Validated
Probab=99.72 E-value=8.4e-17 Score=186.10 Aligned_cols=216 Identities=24% Similarity=0.345 Sum_probs=143.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|++++|+.|.+.+.. ++ +.......| ...+.++||+||||||||++|+++|+.++.||+
T Consensus 185 v~G~~~~k~~l~eiv~~-lk---~~~~~~~~g---------------~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i 245 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSF-LK---KPERFTAVG---------------AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF 245 (638)
T ss_pred ccChHHHHHHHHHHHHH-Hh---CHHHHhhcc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 89999999999887741 11 111100001 113578999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++++++.. .|+|.. ...++.+|..+.. ..++||||||||.+...+.....+.+...+.+++.||..|+|..
T Consensus 246 ~is~s~f~~-~~~g~~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-- 317 (638)
T CHL00176 246 SISGSEFVE-MFVGVG-AARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-- 317 (638)
T ss_pred eccHHHHHH-Hhhhhh-HHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc--
Confidence 999998874 366665 5667788877643 37899999999999876544333333344567777888887521
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++++|+++|..+.
T Consensus 318 -----------------~~~~ViVIaaTN~~~~----------------------------------------------- 333 (638)
T CHL00176 318 -----------------GNKGVIVIAATNRVDI----------------------------------------------- 333 (638)
T ss_pred -----------------CCCCeeEEEecCchHh-----------------------------------------------
Confidence 1234566666653210
Q ss_pred hcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHH
Q 005762 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (678)
Q Consensus 515 ~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~i 592 (678)
+.|.++ +|||..+.+..++.++..+|++..+.. . ....+..+..|++.. .++..+.|+++
T Consensus 334 --LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-------------~-~~~~d~~l~~lA~~t--~G~sgaDL~~l 395 (638)
T CHL00176 334 --LDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-------------K-KLSPDVSLELIARRT--PGFSGADLANL 395 (638)
T ss_pred --hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-------------c-ccchhHHHHHHHhcC--CCCCHHHHHHH
Confidence 222232 699999999999999999999853211 0 012334556666653 34556677777
Q ss_pred HHHHHHH
Q 005762 593 LESILTE 599 (678)
Q Consensus 593 IE~il~~ 599 (678)
+......
T Consensus 396 vneAal~ 402 (638)
T CHL00176 396 LNEAAIL 402 (638)
T ss_pred HHHHHHH
Confidence 7665443
No 50
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.72 E-value=1.4e-16 Score=179.24 Aligned_cols=182 Identities=24% Similarity=0.338 Sum_probs=128.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
|.|++..++.|..+|...+++. ......| ..++.++||+||||||||++|+++|+.++.+
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~---~l~~~~g---------------l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~ 245 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHP---ELYREYD---------------LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIG 245 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCH---HHHHhcc---------------CCCCcceEEECCCCCcHHHHHHHHHHhhccccc
Confidence 7899999999999987443321 0000001 0135789999999999999999999998654
Q ss_pred --------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHH
Q 005762 353 --------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQAL 424 (678)
Q Consensus 353 --------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~L 424 (678)
|+.+...++. ..|+|+. +..++.+|..+........++||||||||.+...++.. .+.+. ...+.+.|
T Consensus 246 ~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~-~s~d~-e~~il~~L 321 (512)
T TIGR03689 246 AETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG-VSSDV-ETTVVPQL 321 (512)
T ss_pred cccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC-ccchH-HHHHHHHH
Confidence 5556666665 4588887 77788888877654444568999999999998765331 12222 23467889
Q ss_pred HHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHH
Q 005762 425 LKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLL 504 (678)
Q Consensus 425 L~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll 504 (678)
|..|+|.. ...++++|+++|..+
T Consensus 322 L~~LDgl~-------------------~~~~ViVI~ATN~~d-------------------------------------- 344 (512)
T TIGR03689 322 LSELDGVE-------------------SLDNVIVIGASNRED-------------------------------------- 344 (512)
T ss_pred HHHhcccc-------------------cCCceEEEeccCChh--------------------------------------
Confidence 99988521 234567777776432
Q ss_pred hhcchhhhhhhcCCccccc--ccceEEecCCcCHHHHHHHHhch
Q 005762 505 ESVESSDLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEP 546 (678)
Q Consensus 505 ~~v~~edLi~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ 546 (678)
.+.|.|+. |||..|.|+.++.++..+|++..
T Consensus 345 -----------~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~ 377 (512)
T TIGR03689 345 -----------MIDPAILRPGRLDVKIRIERPDAEAAADIFSKY 377 (512)
T ss_pred -----------hCCHhhcCccccceEEEeCCCCHHHHHHHHHHH
Confidence 15666664 99999999999999999999864
No 51
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=9.3e-17 Score=181.93 Aligned_cols=133 Identities=31% Similarity=0.421 Sum_probs=110.4
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|.|.|+||+.|.+.|. |. .+..+-..+|. .-+.++||+||||||||+|||++|.+.++||
T Consensus 151 DVAG~dEakeel~EiVd--fL--k~p~ky~~lGa---------------kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF 211 (596)
T COG0465 151 DVAGVDEAKEELSELVD--FL--KNPKKYQALGA---------------KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF 211 (596)
T ss_pred hhcCcHHHHHHHHHHHH--HH--hCchhhHhccc---------------ccccceeEecCCCCCcHHHHHHHhcccCCCc
Confidence 38999999999999986 11 11111111111 2368999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcc
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~ 431 (678)
+.++.+++.+. |+|.. .+.++.+|.++..+ .+|||||||||.+...+..+.++.++..+..+++||..|||.
T Consensus 212 f~iSGS~FVem-fVGvG-AsRVRdLF~qAkk~----aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 212 FSISGSDFVEM-FVGVG-ASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred eeccchhhhhh-hcCCC-cHHHHHHHHHhhcc----CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 99999999975 89998 78899999998764 789999999999999987666778888889999999999974
No 52
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.70 E-value=2.3e-16 Score=180.12 Aligned_cols=218 Identities=24% Similarity=0.348 Sum_probs=153.3
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHH
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYK 377 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~ 377 (678)
.|.++.|..+.+....++....+|||+|++|||||++|++|+... +.||+.+||..+.+. ..+|.. .+.+..
T Consensus 199 iG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~-~~~~~~ 277 (534)
T TIGR01817 199 IGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHE-KGAFTG 277 (534)
T ss_pred EECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCC-CCccCC
Confidence 478888999999998888889999999999999999999999986 469999999987531 011111 000000
Q ss_pred HHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcc
Q 005762 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDI 456 (678)
Q Consensus 378 l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNi 456 (678)
......+.+..+.+|+||||||+.|... +|..|+++|+ +....+.. ... ...++
T Consensus 278 ~~~~~~g~~~~a~~GtL~ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~~~--------~~~---~~~~~ 332 (534)
T TIGR01817 278 AIAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLLRVLQEGEFERVGG--------NRT---LKVDV 332 (534)
T ss_pred CCcCCCCcccccCCCeEEEechhhCCHH--------------HHHHHHHHHhcCcEEECCC--------Cce---EeecE
Confidence 0011123355677899999999999987 9999999998 33332211 011 12345
Q ss_pred eEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcC
Q 005762 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALT 535 (678)
Q Consensus 457 lfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Ls 535 (678)
.+|++++ .++++.+. +..|.++|+.|++. .|.++||.
T Consensus 333 riI~~s~-~~l~~~~~-----------------------------------------~~~f~~~L~~rl~~~~i~lPpLr 370 (534)
T TIGR01817 333 RLVAATN-RDLEEAVA-----------------------------------------KGEFRADLYYRINVVPIFLPPLR 370 (534)
T ss_pred EEEEeCC-CCHHHHHH-----------------------------------------cCCCCHHHHHHhcCCeeeCCCcc
Confidence 6777655 23333332 22388899999976 68999998
Q ss_pred --HHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 536 --EDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 536 --eeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
.+|+..|+..+ +.++...+ +..+.|++++++.|..+.| ..|.|+|+++|++++..
T Consensus 371 eR~eDi~~L~~~~----l~~~~~~~---~~~~~~s~~a~~~L~~~~W--PGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 371 ERREDIPLLAEAF----LEKFNREN---GRPLTITPSAIRVLMSCKW--PGNVRELENCLERTATL 427 (534)
T ss_pred cccccHHHHHHHH----HHHHHHHc---CCCCCCCHHHHHHHHhCCC--CChHHHHHHHHHHHHHh
Confidence 58888888754 44444433 3336799999999999876 77889999999998753
No 53
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.69 E-value=2.8e-16 Score=174.52 Aligned_cols=220 Identities=24% Similarity=0.324 Sum_probs=143.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|.|++.+++.|.+++..... +.......| ..++.++||+||||||||++|+++|+.++.+|+
T Consensus 185 IgGl~~qi~~l~e~v~lpl~---~p~~~~~~g---------------i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLT---HPELYDDIG---------------IKPPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhh---CHHHHHhcC---------------CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 79999999999999863321 111100011 013578999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++++++.. .|+|+. ...+..+|..+.. ..++||||||||.+...+.....+.+.........||..|++..
T Consensus 247 ~V~~seL~~-k~~Ge~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~-- 318 (438)
T PTZ00361 247 RVVGSELIQ-KYLGDG-PKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD-- 318 (438)
T ss_pred EEecchhhh-hhcchH-HHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc--
Confidence 999999874 488877 6678888876544 36789999999999876543222222111223333444445311
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++.+|+++|..+
T Consensus 319 -----------------~~~~V~VI~ATNr~d------------------------------------------------ 333 (438)
T PTZ00361 319 -----------------SRGDVKVIMATNRIE------------------------------------------------ 333 (438)
T ss_pred -----------------ccCCeEEEEecCChH------------------------------------------------
Confidence 123556676665321
Q ss_pred hcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH-HHHHHHHhhcCCCCCHHHHHH
Q 005762 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 515 ~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e-al~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.|.++ +||+..|.|+.++.+++.+|+... . . +. .+.++ -+..++... .++.+..|+.
T Consensus 334 -~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~----~----~-----k~--~l~~dvdl~~la~~t--~g~sgAdI~~ 395 (438)
T PTZ00361 334 -SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIH----T----S-----KM--TLAEDVDLEEFIMAK--DELSGADIKA 395 (438)
T ss_pred -HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHH----H----h-----cC--CCCcCcCHHHHHHhc--CCCCHHHHHH
Confidence 0333443 699999999999999999998742 1 1 11 12222 244555543 3566778888
Q ss_pred HHHHHHHHHHhc
Q 005762 592 ILESILTEAMYE 603 (678)
Q Consensus 592 iIE~il~~a~~~ 603 (678)
++..+...++.+
T Consensus 396 i~~eA~~~Alr~ 407 (438)
T PTZ00361 396 ICTEAGLLALRE 407 (438)
T ss_pred HHHHHHHHHHHh
Confidence 887776666644
No 54
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.69 E-value=1.5e-16 Score=173.46 Aligned_cols=219 Identities=22% Similarity=0.326 Sum_probs=150.9
Q ss_pred CChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEeccccccc----cccccchHHHHHHH
Q 005762 307 AEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLTQA----GYVGEDVESILYKL 378 (678)
Q Consensus 307 ~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s~l~~s----gyvG~~~~~~l~~l 378 (678)
.++.+.++.++++.......+||++|++||||+++|+.|+... ..||+.+||..+.++ ..+|+. .+.++..
T Consensus 83 ~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~-kGaftGa 161 (403)
T COG1221 83 ESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHE-KGAFTGA 161 (403)
T ss_pred cCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccc-cceeecc
Confidence 3333333344444444556899999999999999999999555 459999999988754 234444 3334444
Q ss_pred HHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcce
Q 005762 379 LAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDIL 457 (678)
Q Consensus 379 ~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNil 457 (678)
.....+.++.+.+|+||||||+.|.+. .|..||.+|| |....+.+. .....++.
T Consensus 162 ~~~k~Glfe~A~GGtLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~rvG~~-----------~~~~~dVR 216 (403)
T COG1221 162 QGGKAGLFEQANGGTLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRRVGGS-----------QPRPVDVR 216 (403)
T ss_pred cCCcCchheecCCCEEehhhhhhCCHh--------------HHHHHHHHHHcCceEecCCC-----------CCcCCCce
Confidence 445566778889999999999999998 9999999999 666666332 12345667
Q ss_pred EEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCccccc-ccceEEecCCcCH
Q 005762 458 FICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVG-RFPILVSLTALTE 536 (678)
Q Consensus 458 fI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~-R~~~iv~f~~Lse 536 (678)
+||+++ .++++.+.. | ..|.. |+..+|.++||.+
T Consensus 217 li~AT~-~~l~~~~~~------------------------------------------g--~dl~~rl~~~~I~LPpLrE 251 (403)
T COG1221 217 LICATT-EDLEEAVLA------------------------------------------G--ADLTRRLNILTITLPPLRE 251 (403)
T ss_pred eeeccc-cCHHHHHHh------------------------------------------h--cchhhhhcCceecCCChhh
Confidence 777665 333333321 1 24555 6777999999998
Q ss_pred HHHHHHHhchHHHHHHHHHHHHhcCCceee-eCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhc
Q 005762 537 DQLVKVLTEPKNALGKQYKRLFSMNNVKLH-FTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 537 eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~-~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
. ..+|+.. ...+++++.+.+ +..+. ..+++++.|..+.| ..+.|+|++.|++++..+-..
T Consensus 252 R-~~Di~~L-~e~Fl~~~~~~l---~~~~~~~~~~a~~~L~~y~~--pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 252 R-KEDILLL-AEHFLKSEARRL---GLPLSVDSPEALRALLAYDW--PGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred c-hhhHHHH-HHHHHHHHHHHc---CCCCCCCCHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHhccc
Confidence 6 5555443 234555665544 33333 44799999999876 677899999999999877543
No 55
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.69 E-value=2.1e-16 Score=169.58 Aligned_cols=178 Identities=13% Similarity=0.194 Sum_probs=126.6
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhH-hhhcCcEEEEcCccch
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV-EAAQQGMVYIDEVDKI 402 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v-~~a~~gILfIDEIDkl 402 (678)
.+..++|+||||||||++|+++|+.++.+|+.+++.+|. ++|+|+. ++.++++|..+.... ....+|||||||||.+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 368899999999999999999999999999999999998 5799999 999999999886543 3457899999999999
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHhc-ceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCC
Q 005762 403 TKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (678)
Q Consensus 403 ~~~~~~~~~~~d~s~~~vq~~LL~~LEg-~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ig 481 (678)
.+.+++ ....+..+.+...||.+||+ +.+.+++.-. ..-....+.+|+|+|-.+
T Consensus 225 ~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~--------~~~~~~~V~VIaTTNrpd--------------- 279 (413)
T PLN00020 225 AGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWR--------EKEEIPRVPIIVTGNDFS--------------- 279 (413)
T ss_pred CCCCCC--CCcchHHHHHHHHHHHHhcCCcccccccccc--------ccccCCCceEEEeCCCcc---------------
Confidence 987642 22333334456789999985 2222211000 001234567777776332
Q ss_pred cCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHh
Q 005762 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFS 559 (678)
Q Consensus 482 F~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~ 559 (678)
.+.|+|+. |||..+ ..++.++..+|++.. ++
T Consensus 280 ----------------------------------~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~-----------~r 312 (413)
T PLN00020 280 ----------------------------------TLYAPLIRDGRMEKFY--WAPTREDRIGVVHGI-----------FR 312 (413)
T ss_pred ----------------------------------cCCHhHcCCCCCCcee--CCCCHHHHHHHHHHH-----------hc
Confidence 15666776 999975 368899999998741 11
Q ss_pred cCCceeeeCHHHHHHHHHhh
Q 005762 560 MNNVKLHFTEKALRVIAKKA 579 (678)
Q Consensus 560 ~~gv~l~~t~eal~~La~~a 579 (678)
.. .++...+..|++..
T Consensus 313 ~~----~l~~~dv~~Lv~~f 328 (413)
T PLN00020 313 DD----GVSREDVVKLVDTF 328 (413)
T ss_pred cC----CCCHHHHHHHHHcC
Confidence 11 34567777777763
No 56
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.69 E-value=1.5e-16 Score=170.98 Aligned_cols=221 Identities=20% Similarity=0.318 Sum_probs=145.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC---C
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---V 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---~ 351 (678)
++|...+.+.+.+.+.. ++....+|||+|++||||+++|++|+.... .
T Consensus 8 liG~S~~~~~~~~~i~~-----------------------------~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~ 58 (326)
T PRK11608 8 LLGEANSFLEVLEQVSR-----------------------------LAPLDKPVLIIGERGTGKELIASRLHYLSSRWQG 58 (326)
T ss_pred cEECCHHHHHHHHHHHH-----------------------------HhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCC
Confidence 67888877777666642 222357899999999999999999998774 6
Q ss_pred CEEEEeccccccc----cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHH
Q 005762 352 PFVIADATTLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (678)
Q Consensus 352 ~fv~id~s~l~~s----gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~ 427 (678)
||+.+||..+.+. .++|... ..+........+.+..+.+|+||||||+.|... +|..|+.+
T Consensus 59 pfv~v~c~~~~~~~~~~~lfg~~~-~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~--------------~Q~~L~~~ 123 (326)
T PRK11608 59 PFISLNCAALNENLLDSELFGHEA-GAFTGAQKRHPGRFERADGGTLFLDELATAPML--------------VQEKLLRV 123 (326)
T ss_pred CeEEEeCCCCCHHHHHHHHccccc-cccCCcccccCCchhccCCCeEEeCChhhCCHH--------------HHHHHHHH
Confidence 9999999987521 1112110 000000011123456678899999999999987 99999999
Q ss_pred Hhc-ceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhh
Q 005762 428 LEG-TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLES 506 (678)
Q Consensus 428 LEg-~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~ 506 (678)
|+. ....+ |... . -..++.+|++++. ++++.+.+
T Consensus 124 l~~~~~~~~---g~~~-------~-~~~~~RiI~~s~~-~l~~l~~~--------------------------------- 158 (326)
T PRK11608 124 IEYGELERV---GGSQ-------P-LQVNVRLVCATNA-DLPAMVAE--------------------------------- 158 (326)
T ss_pred HhcCcEEeC---CCCc-------e-eeccEEEEEeCch-hHHHHHHc---------------------------------
Confidence 983 32221 1100 1 1135567776552 33333221
Q ss_pred cchhhhhhhcCCcccccccce-EEecCCcCH--HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCC
Q 005762 507 VESSDLIAYGLIPEFVGRFPI-LVSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKN 583 (678)
Q Consensus 507 v~~edLi~~g~~Pefl~R~~~-iv~f~~Lse--eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~ 583 (678)
..|.++|..||.. .|.++||.+ +|+..++..+ +.++.+.+.. .+...|++++++.|..+.| .
T Consensus 159 --------g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~f----l~~~~~~~~~-~~~~~~s~~al~~L~~y~W--P 223 (326)
T PRK11608 159 --------GKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHF----AIQMCRELGL-PLFPGFTERARETLLNYRW--P 223 (326)
T ss_pred --------CCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHH----HHHHHHHhCC-CCCCCCCHHHHHHHHhCCC--C
Confidence 2277888899954 799999987 7777777653 4444433211 1124699999999999887 6
Q ss_pred CCHHHHHHHHHHHHHH
Q 005762 584 TGARGLRAILESILTE 599 (678)
Q Consensus 584 ~GAR~Lr~iIE~il~~ 599 (678)
.|.|+|++++++++..
T Consensus 224 GNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 224 GNIRELKNVVERSVYR 239 (326)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 7789999999998764
No 57
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.9e-16 Score=174.19 Aligned_cols=219 Identities=27% Similarity=0.394 Sum_probs=152.9
Q ss_pred ccCHHHHHHHHHHHHHH--HHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 275 VIGQEKAKKVLSVAVYN--HYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~--~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
|-|..++|+.|.+.+.. .|-.++... ++ .-..+|||+||||||||+||-++|..++..
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~-------------------pl-r~~~giLLyGppGcGKT~la~a~a~~~~~~ 728 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANC-------------------PL-RLRTGILLYGPPGCGKTLLASAIASNSNLR 728 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhC-------------------Cc-ccccceEEECCCCCcHHHHHHHHHhhCCee
Confidence 67899999999888862 233333221 11 124799999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce
Q 005762 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (678)
Q Consensus 353 fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~ 432 (678)
|+.+-.-+|. +.|+|.+ +..++.+|..+.. +.+||||+||+|.++++|+-.+.|-. .++.|+||..|||..
T Consensus 729 fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~~----a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~E 799 (952)
T KOG0735|consen 729 FISVKGPELL-SKYIGAS-EQNVRDLFERAQS----AKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAE 799 (952)
T ss_pred EEEecCHHHH-HHHhccc-HHHHHHHHHHhhc----cCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhcccc
Confidence 9999999998 5799999 8899999988754 59999999999999998754433222 359999999999733
Q ss_pred eecCCCCcccCCCCCeEEEecCcceEEecCCCcCH-HHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhh
Q 005762 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSD 511 (678)
Q Consensus 433 v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~L-e~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~ed 511 (678)
. .+.+.++.++...+| +.++
T Consensus 800 g-------------------l~GV~i~aaTsRpdliDpAL---------------------------------------- 820 (952)
T KOG0735|consen 800 G-------------------LDGVYILAATSRPDLIDPAL---------------------------------------- 820 (952)
T ss_pred c-------------------cceEEEEEecCCccccCHhh----------------------------------------
Confidence 2 111222222222221 1110
Q ss_pred hhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 512 LIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 512 Li~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
++| +|+|..+.-+.+++.+..+|++- |.. ....-++--++.||... .++..-.|+.
T Consensus 821 -----LRp---GRlD~~v~C~~P~~~eRl~il~~----ls~----------s~~~~~~vdl~~~a~~T--~g~tgADlq~ 876 (952)
T KOG0735|consen 821 -----LRP---GRLDKLVYCPLPDEPERLEILQV----LSN----------SLLKDTDVDLECLAQKT--DGFTGADLQS 876 (952)
T ss_pred -----cCC---CccceeeeCCCCCcHHHHHHHHH----Hhh----------ccCCccccchHHHhhhc--CCCchhhHHH
Confidence 333 89999999999999999999884 221 11112344567788764 3444447888
Q ss_pred HHHHHHHHHHhcCC
Q 005762 592 ILESILTEAMYEIP 605 (678)
Q Consensus 592 iIE~il~~a~~~~p 605 (678)
++-+.-+.+..++.
T Consensus 877 ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 877 LLYNAQLAAVHEIL 890 (952)
T ss_pred HHHHHHHHHHHHHH
Confidence 88776666665543
No 58
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.66 E-value=8.8e-16 Score=174.40 Aligned_cols=221 Identities=21% Similarity=0.299 Sum_probs=155.3
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHH
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYK 377 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~ 377 (678)
.|.++.|..+.+....++....+|||+|++||||+++|++|+... +.||+.+||..+.+. .++|.. ...+..
T Consensus 190 ig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~-~g~~~g 268 (509)
T PRK05022 190 IGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHV-KGAFTG 268 (509)
T ss_pred eecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCcc-ccccCC
Confidence 578889999999999999999999999999999999999999986 469999999987531 111211 000001
Q ss_pred HHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcc
Q 005762 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDI 456 (678)
Q Consensus 378 l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNi 456 (678)
......+.++.+.+|+||||||+.|... +|..|+++|+ +....+... .. ...++
T Consensus 269 a~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~~---~~~~~ 323 (509)
T PRK05022 269 AISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSD--------RS---LRVDV 323 (509)
T ss_pred CcccCCcchhhcCCCEEEecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCC--------cc---eecce
Confidence 1111223456678899999999999987 9999999998 433332111 11 11345
Q ss_pred eEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcC
Q 005762 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALT 535 (678)
Q Consensus 457 lfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Ls 535 (678)
.+|++++. ++++.+. +..|.++|..|+.. .|.++||.
T Consensus 324 RiI~~t~~-~l~~~~~-----------------------------------------~~~f~~dL~~rl~~~~i~lPpLr 361 (509)
T PRK05022 324 RVIAATNR-DLREEVR-----------------------------------------AGRFRADLYHRLSVFPLSVPPLR 361 (509)
T ss_pred EEEEecCC-CHHHHHH-----------------------------------------cCCccHHHHhcccccEeeCCCch
Confidence 66666553 3443332 22378888889876 58999998
Q ss_pred H--HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 005762 536 E--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (678)
Q Consensus 536 e--eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~ 601 (678)
+ +|+..++.. ++.++...+. ...+.|++++++.|..+.| ..|.|+|+++|++++..+.
T Consensus 362 eR~eDI~~L~~~----fl~~~~~~~~--~~~~~~s~~a~~~L~~y~W--PGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 362 ERGDDVLLLAGY----FLEQNRARLG--LRSLRLSPAAQAALLAYDW--PGNVRELEHVISRAALLAR 421 (509)
T ss_pred hchhhHHHHHHH----HHHHHHHHcC--CCCCCCCHHHHHHHHhCCC--CCcHHHHHHHHHHHHHhcC
Confidence 7 677776664 4555544332 2345799999999999877 7778999999999886544
No 59
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.66 E-value=1.5e-15 Score=165.53 Aligned_cols=220 Identities=28% Similarity=0.392 Sum_probs=143.8
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
+.|.|++.+++.|.+++...... .......|. .++.++||+||||||||++|+++|+.++.+
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~---~~~~~~~g~---------------~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKH---PELFEEVGI---------------EPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcC---HHHHHhcCC---------------CCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 34899999999999988633221 110000111 124789999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHH---h
Q 005762 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---E 429 (678)
Q Consensus 353 fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~L---E 429 (678)
|+.+.+.++.. .|+|.. ...+..+|..+.. ..++||||||||.+...+.....+.+ ..++..|++++ +
T Consensus 184 ~~~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~---~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 184 FIRVVGSELVR-KYIGEG-ARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAELD 254 (364)
T ss_pred EEecchHHHHH-HhhhHH-HHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCcc---HHHHHHHHHHHHHhh
Confidence 99999888763 466765 5566677765432 36789999999999776433222222 23455555555 3
Q ss_pred cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcch
Q 005762 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (678)
Q Consensus 430 g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~ 509 (678)
+. -...++.||+++|..+
T Consensus 255 ~~-------------------~~~~~v~vI~ttn~~~------------------------------------------- 272 (364)
T TIGR01242 255 GF-------------------DPRGNVKVIAATNRPD------------------------------------------- 272 (364)
T ss_pred CC-------------------CCCCCEEEEEecCChh-------------------------------------------
Confidence 21 0123566777776321
Q ss_pred hhhhhhcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHH
Q 005762 510 SDLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGAR 587 (678)
Q Consensus 510 edLi~~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR 587 (678)
.+.+.++ +||+.++.++.++.++..+|+... . . +..+. .+.-+..|++.+ .++..+
T Consensus 273 ------~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~----~----~-----~~~l~-~~~~~~~la~~t--~g~sg~ 330 (364)
T TIGR01242 273 ------ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIH----T----R-----KMKLA-EDVDLEAIAKMT--EGASGA 330 (364)
T ss_pred ------hCChhhcCcccCceEEEeCCcCHHHHHHHHHHH----H----h-----cCCCC-ccCCHHHHHHHc--CCCCHH
Confidence 0333343 599999999999999999998742 1 1 11111 011256667654 467788
Q ss_pred HHHHHHHHHHHHHHhc
Q 005762 588 GLRAILESILTEAMYE 603 (678)
Q Consensus 588 ~Lr~iIE~il~~a~~~ 603 (678)
.|+.++..+...++.+
T Consensus 331 dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 331 DLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999988887777654
No 60
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.9e-16 Score=156.53 Aligned_cols=145 Identities=30% Similarity=0.448 Sum_probs=109.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|-|.+-.|+.+.++|..... +..+.+..|- -++.++||+||||||||.||+++|+.....|+
T Consensus 157 iggld~qkqeireavelplt---~~~ly~qigi---------------dpprgvllygppg~gktml~kava~~t~a~fi 218 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLT---HADLYKQIGI---------------DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred cccchhhHHHHHHHHhccch---HHHHHHHhCC---------------CCCcceEEeCCCCCcHHHHHHHHhhccchhee
Confidence 77888899999999862211 1111111121 24689999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHH---Hhcc
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM---LEGT 431 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~---LEg~ 431 (678)
.+..+++.+ .|.|+. ...++..|+-+..+ .++||||||||.+..++-....+.|.. +|..|+++ |+|+
T Consensus 219 rvvgsefvq-kylgeg-prmvrdvfrlaken----apsiifideidaiatkrfdaqtgadre---vqril~ellnqmdgf 289 (408)
T KOG0727|consen 219 RVVGSEFVQ-KYLGEG-PRMVRDVFRLAKEN----APSIIFIDEIDAIATKRFDAQTGADRE---VQRILIELLNQMDGF 289 (408)
T ss_pred eeccHHHHH-HHhccC-cHHHHHHHHHHhcc----CCcEEEeehhhhHhhhhccccccccHH---HHHHHHHHHHhccCc
Confidence 999999995 699999 67899999887664 889999999999999887766666654 55555555 4552
Q ss_pred eeecCCCCcccCCCCCeEEEecCcceEEecCCCc
Q 005762 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (678)
Q Consensus 432 ~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~ 465 (678)
- .++|+-+|+++|..
T Consensus 290 d-------------------q~~nvkvimatnra 304 (408)
T KOG0727|consen 290 D-------------------QTTNVKVIMATNRA 304 (408)
T ss_pred C-------------------cccceEEEEecCcc
Confidence 2 35677788877743
No 61
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.65 E-value=1.5e-15 Score=176.82 Aligned_cols=213 Identities=18% Similarity=0.315 Sum_probs=143.1
Q ss_pred CCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHHH
Q 005762 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYKL 378 (678)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~l 378 (678)
|.++.|..+.+....++....+|||+|++||||+++|++|++.. +.||+.+||..+.+. .++|+.... .
T Consensus 329 g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~----~ 404 (638)
T PRK11388 329 QDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTD----S 404 (638)
T ss_pred ECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcC----c
Confidence 34444555555555555566889999999999999999999987 469999999987531 122211000 0
Q ss_pred HHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcce
Q 005762 379 LAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDIL 457 (678)
Q Consensus 379 ~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNil 457 (678)
.....+.++.+.+|+||||||+.|... +|..|+++|+ +....+... ..+. .++.
T Consensus 405 ~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~--------~~~~---~~~r 459 (638)
T PRK11388 405 ENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQSALLQVLKTGVITRLDSR--------RLIP---VDVR 459 (638)
T ss_pred cCCCCCceeECCCCEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCC--------ceEE---eeEE
Confidence 001122355678899999999999987 9999999998 433332111 1111 2455
Q ss_pred EEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCH
Q 005762 458 FICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTE 536 (678)
Q Consensus 458 fI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Lse 536 (678)
+|++++ .++.+.+.+ ..|.++|+.||.. .|.++||.+
T Consensus 460 iI~~t~-~~l~~~~~~-----------------------------------------~~f~~dL~~~l~~~~i~lPpLre 497 (638)
T PRK11388 460 VIATTT-ADLAMLVEQ-----------------------------------------NRFSRQLYYALHAFEITIPPLRM 497 (638)
T ss_pred EEEecc-CCHHHHHhc-----------------------------------------CCChHHHhhhhceeEEeCCChhh
Confidence 676655 334433332 2377888888876 689999987
Q ss_pred --HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 537 --DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 537 --eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
+|+..++.. ++.++...+ +..+.|++++++.|.++.| ..+.|+|+++|++++.
T Consensus 498 R~~Di~~L~~~----~l~~~~~~~---~~~~~~s~~a~~~L~~y~W--PGNvreL~~~l~~~~~ 552 (638)
T PRK11388 498 RREDIPALVNN----KLRSLEKRF---STRLKIDDDALARLVSYRW--PGNDFELRSVIENLAL 552 (638)
T ss_pred hhhHHHHHHHH----HHHHHHHHh---CCCCCcCHHHHHHHHcCCC--CChHHHHHHHHHHHHH
Confidence 578777775 344443322 3346799999999999887 6778999999999775
No 62
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.65 E-value=2.8e-15 Score=166.12 Aligned_cols=166 Identities=27% Similarity=0.407 Sum_probs=117.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
.++||+||||||||++|++||+.++.+|+.+++.... ...+..++.............||||||||.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 5899999999999999999999999999999986432 2234444444322222235679999999999876
Q ss_pred hccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcc
Q 005762 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (678)
Q Consensus 406 ~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~ 485 (678)
.|+.|++.||... ++||.+++...
T Consensus 108 --------------~q~~LL~~le~~~-----------------------iilI~att~n~------------------- 131 (413)
T PRK13342 108 --------------QQDALLPHVEDGT-----------------------ITLIGATTENP------------------- 131 (413)
T ss_pred --------------HHHHHHHHhhcCc-----------------------EEEEEeCCCCh-------------------
Confidence 8999999998311 23333222110
Q ss_pred cccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCcee
Q 005762 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (678)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l 565 (678)
...+.+.+++|+ .++.|.+|+.+++..++... ..... .+. +
T Consensus 132 ----------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~----l~~~~-----~~~-i 172 (413)
T PRK13342 132 ----------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRA----LEDKE-----RGL-V 172 (413)
T ss_pred ----------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHH----HHHhh-----cCC-C
Confidence 011567788888 56899999999999988752 11111 132 4
Q ss_pred eeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 566 HFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 566 ~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
.+++++++.|++.+ ..+.|.+.++++.++.
T Consensus 173 ~i~~~al~~l~~~s---~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 173 ELDDEALDALARLA---NGDARRALNLLELAAL 202 (413)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 79999999999985 6678999999888653
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.8e-15 Score=167.10 Aligned_cols=184 Identities=25% Similarity=0.323 Sum_probs=126.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
||||+.+++.|..++.+. . ....+||+||+|||||++|+.+|+.++..
T Consensus 20 vVGQe~iv~~L~~~i~~~-------r-----------------------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~ 69 (484)
T PRK14956 20 VIHQDLAIGALQNALKSG-------K-----------------------IGHAYIFFGPRGVGKTTIARILAKRLNCENP 69 (484)
T ss_pred HhChHHHHHHHHHHHHcC-------C-----------------------CCeEEEEECCCCCCHHHHHHHHHHhcCcccc
Confidence 899999999988877521 0 01348999999999999999999998752
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
|+.+|+..- .|. ..++++.......-......|+||||+|.|...
T Consensus 70 ~~~~pCg~C~sC~~i~~g~~~dviEIdaas~-----~gV---d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~----- 136 (484)
T PRK14956 70 IGNEPCNECTSCLEITKGISSDVLEIDAASN-----RGI---ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ----- 136 (484)
T ss_pred cCccccCCCcHHHHHHccCCccceeechhhc-----ccH---HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH-----
Confidence 333333211 121 233444333222112234569999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ..+++||++++..
T Consensus 137 ---------A~NALLKtLEEP---------------------p~~viFILaTte~------------------------- 161 (484)
T PRK14956 137 ---------SFNALLKTLEEP---------------------PAHIVFILATTEF------------------------- 161 (484)
T ss_pred ---------HHHHHHHHhhcC---------------------CCceEEEeecCCh-------------------------
Confidence 999999999841 1345677655421
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
..+.+.+++|+. .+.|.+++.+++.+.+.. +. ...+ +.++++
T Consensus 162 ------------------------~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~----i~-------~~Eg--i~~e~e 203 (484)
T PRK14956 162 ------------------------HKIPETILSRCQ-DFIFKKVPLSVLQDYSEK----LC-------KIEN--VQYDQE 203 (484)
T ss_pred ------------------------hhccHHHHhhhh-eeeecCCCHHHHHHHHHH----HH-------HHcC--CCCCHH
Confidence 015566677764 479999999998887764 11 1223 569999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++..|++.+ .++.|..-++++.++
T Consensus 204 AL~~Ia~~S---~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 204 GLFWIAKKG---DGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHc---CChHHHHHHHHHHHH
Confidence 999999986 677898888888765
No 64
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.64 E-value=5.6e-15 Score=158.75 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=136.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
++||+++++.|..++.....+ . ....++||+||||||||++|+++|+.++..+.
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~----~----------------------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKR----G----------------------EALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhc----C----------------------CCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 699999999998877532100 0 12368999999999999999999999999887
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+++..+.. ...+..++... ..+.||||||||.+... +++.|+..|+...+.
T Consensus 81 ~~~~~~~~~--------~~~l~~~l~~l------~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~~ 132 (328)
T PRK00080 81 ITSGPALEK--------PGDLAAILTNL------EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLD 132 (328)
T ss_pred EEecccccC--------hHHHHHHHHhc------ccCCEEEEecHhhcchH--------------HHHHHHHHHHhccee
Confidence 777654432 12233333322 24679999999999765 777888999854332
Q ss_pred cC-CCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 435 VP-EKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 435 v~-~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
+- .++. ....+.+....+++|++++..+
T Consensus 133 ~~l~~~~----~~~~~~~~l~~~~li~at~~~~----------------------------------------------- 161 (328)
T PRK00080 133 IMIGKGP----AARSIRLDLPPFTLIGATTRAG----------------------------------------------- 161 (328)
T ss_pred eeeccCc----cccceeecCCCceEEeecCCcc-----------------------------------------------
Confidence 10 1110 1112222333455666554211
Q ss_pred hhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005762 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (678)
Q Consensus 514 ~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iI 593 (678)
.+.++|.+||..++.|.+++.+++.+|+... .. ...+.++++++++|++.+ ....|-+..++
T Consensus 162 --~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~----~~---------~~~~~~~~~~~~~ia~~~---~G~pR~a~~~l 223 (328)
T PRK00080 162 --LLTSPLRDRFGIVQRLEFYTVEELEKIVKRS----AR---------ILGVEIDEEGALEIARRS---RGTPRIANRLL 223 (328)
T ss_pred --cCCHHHHHhcCeeeecCCCCHHHHHHHHHHH----HH---------HcCCCcCHHHHHHHHHHc---CCCchHHHHHH
Confidence 1556778899889999999999999998842 11 124568999999999986 34457777777
Q ss_pred HHHHHHHH
Q 005762 594 ESILTEAM 601 (678)
Q Consensus 594 E~il~~a~ 601 (678)
+++..-+.
T Consensus 224 ~~~~~~a~ 231 (328)
T PRK00080 224 RRVRDFAQ 231 (328)
T ss_pred HHHHHHHH
Confidence 76554444
No 65
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.64 E-value=5.2e-15 Score=156.66 Aligned_cols=204 Identities=23% Similarity=0.351 Sum_probs=131.4
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
|++ +|||+++++.|..++...-.+ . ....+++|+||||||||++|+++|+.++
T Consensus 3 ~~~-~iG~~~~~~~l~~~l~~~~~~------~--------------------~~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 3 LAE-FIGQEKVKEQLQLFIEAAKMR------Q--------------------EALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred HHH-HcCHHHHHHHHHHHHHHHHhc------C--------------------CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 444 699999999988877421000 0 0136799999999999999999999999
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 351 ~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
.++..+++..+.. ...+...+... ..+.||||||||.+.+. .++.|+.+|++
T Consensus 56 ~~~~~~~~~~~~~--------~~~l~~~l~~~------~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~ 107 (305)
T TIGR00635 56 VNLKITSGPALEK--------PGDLAAILTNL------EEGDVLFIDEIHRLSPA--------------VEELLYPAMED 107 (305)
T ss_pred CCEEEeccchhcC--------chhHHHHHHhc------ccCCEEEEehHhhhCHH--------------HHHHhhHHHhh
Confidence 8887776654332 11222333221 24579999999999876 78889999984
Q ss_pred ceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchh
Q 005762 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (678)
Q Consensus 431 ~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~e 510 (678)
....+--.. ......+.+....+++|.+++..
T Consensus 108 ~~~~~v~~~---~~~~~~~~~~~~~~~li~~t~~~--------------------------------------------- 139 (305)
T TIGR00635 108 FRLDIVIGK---GPSARSVRLDLPPFTLVGATTRA--------------------------------------------- 139 (305)
T ss_pred hheeeeecc---CccccceeecCCCeEEEEecCCc---------------------------------------------
Confidence 333210000 00001112222233444433311
Q ss_pred hhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHH
Q 005762 511 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (678)
Q Consensus 511 dLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr 590 (678)
..+.+.|.+||..++.|.+++.+++.+|+... .. ...+.++++++++|++.+ ....|.+.
T Consensus 140 ----~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~----~~---------~~~~~~~~~al~~ia~~~---~G~pR~~~ 199 (305)
T TIGR00635 140 ----GMLTSPLRDRFGIILRLEFYTVEELAEIVSRS----AG---------LLNVEIEPEAALEIARRS---RGTPRIAN 199 (305)
T ss_pred ----cccCHHHHhhcceEEEeCCCCHHHHHHHHHHH----HH---------HhCCCcCHHHHHHHHHHh---CCCcchHH
Confidence 11556788999888999999999999998742 11 123469999999999985 34457777
Q ss_pred HHHHHHH
Q 005762 591 AILESIL 597 (678)
Q Consensus 591 ~iIE~il 597 (678)
++++.+.
T Consensus 200 ~ll~~~~ 206 (305)
T TIGR00635 200 RLLRRVR 206 (305)
T ss_pred HHHHHHH
Confidence 7777654
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=2.8e-15 Score=172.93 Aligned_cols=184 Identities=25% Similarity=0.358 Sum_probs=126.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
||||+++++.|..++... + ....+||+||+|||||++|++||+.+++
T Consensus 18 VIGQe~Vv~~L~~aL~~g--R----------------------------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~ 67 (830)
T PRK07003 18 LVGQEHVVRALTHALDGG--R----------------------------LHHAYLFTGTRGVGKTTLSRIFAKALNCETG 67 (830)
T ss_pred HcCcHHHHHHHHHHHhcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCccC
Confidence 899999999998877411 0 0234699999999999999999999864
Q ss_pred ---------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 352 ---------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 352 ---------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
.++++|..+- .| ...+++++....+........||||||+|.|+..
T Consensus 68 ~~~~PCG~C~sCr~I~~G~h~DviEIDAas~-----rg---VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~----- 134 (830)
T PRK07003 68 VTSQPCGVCRACREIDEGRFVDYVEMDAASN-----RG---VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH----- 134 (830)
T ss_pred CCCCCCcccHHHHHHhcCCCceEEEeccccc-----cc---HHHHHHHHHHHHhccccCCceEEEEeChhhCCHH-----
Confidence 2334433321 11 2234455544333222345579999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.++.||+.||. ...+++||++++..
T Consensus 135 ---------A~NALLKtLEE---------------------PP~~v~FILaTtd~------------------------- 159 (830)
T PRK07003 135 ---------AFNAMLKTLEE---------------------PPPHVKFILATTDP------------------------- 159 (830)
T ss_pred ---------HHHHHHHHHHh---------------------cCCCeEEEEEECCh-------------------------
Confidence 89999999994 12345677766521
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
..+.+.+++|+ ..+.|.+++.+++.++|... +..++ +.++++
T Consensus 160 ------------------------~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~I-----------l~~Eg--I~id~e 201 (830)
T PRK07003 160 ------------------------QKIPVTVLSRC-LQFNLKQMPAGHIVSHLERI-----------LGEER--IAFEPQ 201 (830)
T ss_pred ------------------------hhccchhhhhe-EEEecCCcCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 11556777787 45799999999999888742 11233 568999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++..|++.+ ..+.|...++++..+
T Consensus 202 AL~lIA~~A---~GsmRdALsLLdQAi 225 (830)
T PRK07003 202 ALRLLARAA---QGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999986 566777777766655
No 67
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.63 E-value=3.6e-15 Score=169.47 Aligned_cols=215 Identities=21% Similarity=0.326 Sum_probs=144.5
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHH-----------hCCCEEEEeccccccc----ccccc
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH-----------VNVPFVIADATTLTQA----GYVGE 369 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~-----------l~~~fv~id~s~l~~s----gyvG~ 369 (678)
.|.|+.|..+......++....+|||+|++||||+++|++|++. .+.||+.+||..+.+. ..+|+
T Consensus 222 iG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~ 301 (538)
T PRK15424 222 LGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGY 301 (538)
T ss_pred eeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCC
Confidence 46677777777777777778899999999999999999999988 3569999999987532 12222
Q ss_pred chHHHHHHHH-HhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc-ceeecCCCCcccCCCCC
Q 005762 370 DVESILYKLL-AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGD 447 (678)
Q Consensus 370 ~~~~~l~~l~-~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg-~~v~v~~~g~~~~~~~~ 447 (678)
. .+.++... ....+.++.+.+|+||||||+.|... +|..|+++|+. ....+ |...
T Consensus 302 ~-~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~kLl~~L~e~~~~r~---G~~~----- 358 (538)
T PRK15424 302 E-EGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP--------------LQTRLLRVLEEKEVTRV---GGHQ----- 358 (538)
T ss_pred c-cccccCccccccCCchhccCCCEEEEcChHhCCHH--------------HHHHHHhhhhcCeEEec---CCCc-----
Confidence 2 11111110 01224566778899999999999987 99999999984 33333 1111
Q ss_pred eEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce
Q 005762 448 SIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI 527 (678)
Q Consensus 448 ~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~ 527 (678)
. -..++-+|++++ .+|++.+.++ .|.++|..|+..
T Consensus 359 ~---~~~dvRiIaat~-~~L~~~v~~g-----------------------------------------~Fr~dL~yrL~~ 393 (538)
T PRK15424 359 P---VPVDVRVISATH-CDLEEDVRQG-----------------------------------------RFRRDLFYRLSI 393 (538)
T ss_pred e---eccceEEEEecC-CCHHHHHhcc-----------------------------------------cchHHHHHHhcC
Confidence 1 123556676655 3344444322 277777888876
Q ss_pred -EEecCCcCH--HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHH-------HHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 528 -LVSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKAL-------RVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 528 -iv~f~~Lse--eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal-------~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
.|.++||.+ +|+..++.. +++++...+ +. .++++++ +.|..+.| ..|.|+|+++|++++
T Consensus 394 ~~I~lPPLReR~eDI~~L~~~----fl~~~~~~~---~~--~~~~~a~~~~~~a~~~L~~y~W--PGNvREL~nvier~~ 462 (538)
T PRK15424 394 LRLQLPPLRERVADILPLAES----FLKQSLAAL---SA--PFSAALRQGLQQCETLLLHYDW--PGNVRELRNLMERLA 462 (538)
T ss_pred CeecCCChhhchhHHHHHHHH----HHHHHHHHc---CC--CCCHHHHHhhHHHHHHHHhCCC--CchHHHHHHHHHHHH
Confidence 689999987 677777765 344443322 22 2566555 67777665 788899999999987
Q ss_pred H
Q 005762 598 T 598 (678)
Q Consensus 598 ~ 598 (678)
.
T Consensus 463 i 463 (538)
T PRK15424 463 L 463 (538)
T ss_pred H
Confidence 6
No 68
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.63 E-value=3.9e-15 Score=169.11 Aligned_cols=216 Identities=21% Similarity=0.328 Sum_probs=149.6
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHH
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYK 377 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~ 377 (678)
.|.++.|..+......++....+|||+|++||||+++|++|++.. +.||+.+||..+.+. .++|+. ++.++.
T Consensus 215 iG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~-~gaftg 293 (526)
T TIGR02329 215 LGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYE-EGAFTG 293 (526)
T ss_pred eeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCc-cccccc
Confidence 467788888888888888888999999999999999999999876 569999999987532 122222 111111
Q ss_pred HH-HhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc-ceeecCCCCcccCCCCCeEEEecCc
Q 005762 378 LL-AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGDSIQMDTKD 455 (678)
Q Consensus 378 l~-~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg-~~v~v~~~g~~~~~~~~~i~idtsN 455 (678)
.. ....+.++.+.+|+||||||+.|... +|..|+++|+. ....+... .. -..+
T Consensus 294 a~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g~~--------~~---~~~d 348 (526)
T TIGR02329 294 ARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------LQTRLLRVLEEREVVRVGGT--------EP---VPVD 348 (526)
T ss_pred ccccccccchhhcCCceEEecChHhCCHH--------------HHHHHHHHHhcCcEEecCCC--------ce---eeec
Confidence 10 01234456678899999999999987 99999999984 33332111 11 1224
Q ss_pred ceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCc
Q 005762 456 ILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTAL 534 (678)
Q Consensus 456 ilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~L 534 (678)
+-+|++++. +|.+.+.+ ..|.++|..|++. .|.++||
T Consensus 349 vRiIaat~~-~l~~~v~~-----------------------------------------g~fr~dL~~rL~~~~I~lPPL 386 (526)
T TIGR02329 349 VRVVAATHC-ALTTAVQQ-----------------------------------------GRFRRDLFYRLSILRIALPPL 386 (526)
T ss_pred ceEEeccCC-CHHHHhhh-----------------------------------------cchhHHHHHhcCCcEEeCCCc
Confidence 566666552 33333321 2277788888875 7899999
Q ss_pred CH--HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHH-------HHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 535 TE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRV-------IAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 535 se--eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~-------La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
.+ +|+..++.. ++.++...+ .+.+++++++. |..+.| ..+.|+|++++++++..
T Consensus 387 ReR~eDI~~L~~~----fl~~~~~~~-----~~~~~~~a~~~~~~~~~~L~~y~W--PGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 387 RERPGDILPLAAE----YLVQAAAAL-----RLPDSEAAAQVLAGVADPLQRYPW--PGNVRELRNLVERLALE 449 (526)
T ss_pred hhchhHHHHHHHH----HHHHHHHHc-----CCCCCHHHHHHhHHHHHHHHhCCC--CchHHHHHHHHHHHHHh
Confidence 87 788887775 344443322 23489999988 888766 77889999999998764
No 69
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.63 E-value=5.2e-15 Score=168.48 Aligned_cols=204 Identities=19% Similarity=0.313 Sum_probs=135.3
Q ss_pred cccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHHHHHhhchhHhhhcCc
Q 005762 320 NVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQG 392 (678)
Q Consensus 320 ~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~l~~~a~~~v~~a~~g 392 (678)
.++....+|||+|++||||+++|++++... +.||+.+||..+.+. ..+|+..+ .+........+.++.+.+|
T Consensus 222 ~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~-~~~~~~~~~~g~~e~a~~G 300 (520)
T PRK10820 222 KLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPG-AYPNALEGKKGFFEQANGG 300 (520)
T ss_pred HHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCC-CcCCcccCCCChhhhcCCC
Confidence 334446789999999999999999999876 469999999987531 11121100 0000001112335566789
Q ss_pred EEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHH
Q 005762 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTI 471 (678)
Q Consensus 393 ILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i 471 (678)
+||||||+.|... +|..|+++|+ +....+ |.. .. -..++.+|++++. ++.+.+
T Consensus 301 tL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~---g~~-----~~---~~~~vRiI~st~~-~l~~l~ 354 (520)
T PRK10820 301 SVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRV---GED-----HE---VHVDVRVICATQK-NLVELV 354 (520)
T ss_pred EEEEeChhhCCHH--------------HHHHHHHHHhcCCcccC---CCC-----cc---eeeeeEEEEecCC-CHHHHH
Confidence 9999999999887 9999999998 433322 111 11 1235567776542 343333
Q ss_pred HhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCH--HHHHHHHhchHH
Q 005762 472 SERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTE--DQLVKVLTEPKN 548 (678)
Q Consensus 472 ~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Lse--eeL~~Il~~~ln 548 (678)
.+ ..|.++|..|+.. .+.++||.+ +|+..++..
T Consensus 355 ~~-----------------------------------------g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~--- 390 (520)
T PRK10820 355 QK-----------------------------------------GEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTEL--- 390 (520)
T ss_pred Hc-----------------------------------------CCccHHHHhhcCeeEEeCCCcccChhHHHHHHHH---
Confidence 22 2277888889875 789999987 577776664
Q ss_pred HHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 549 ALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 549 ~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
++.++...+.. ....+++++++.|..+.| ..+.|+|+++|++++..
T Consensus 391 -fl~~~~~~~g~--~~~~ls~~a~~~L~~y~W--PGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 391 -FVARFADEQGV--PRPKLAADLNTVLTRYGW--PGNVRQLKNAIYRALTQ 436 (520)
T ss_pred -HHHHHHHHcCC--CCCCcCHHHHHHHhcCCC--CCHHHHHHHHHHHHHHh
Confidence 44445443221 234699999999999877 77789999999998764
No 70
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.63 E-value=2.4e-15 Score=171.47 Aligned_cols=216 Identities=23% Similarity=0.313 Sum_probs=136.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l----- 349 (678)
++||+.+++.|..++.. ..+.++||+||||||||++|+++++.+
T Consensus 67 iiGqs~~i~~l~~al~~-------------------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~ 115 (531)
T TIGR02902 67 IIGQEEGIKALKAALCG-------------------------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPA 115 (531)
T ss_pred eeCcHHHHHHHHHHHhC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 89999999888765420 123689999999999999999998753
Q ss_pred -----CCCEEEEecccc--ccccc----cccchHHHH--HHH------HHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 350 -----NVPFVIADATTL--TQAGY----VGEDVESIL--YKL------LAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 350 -----~~~fv~id~s~l--~~sgy----vG~~~~~~l--~~l------~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
+.+|+.+||+.. .+.++ +|....... ... .....+.+..+.+++|||||||.|++.
T Consensus 116 s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~----- 190 (531)
T TIGR02902 116 SPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV----- 190 (531)
T ss_pred CCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----
Confidence 358999999742 11111 110000000 000 011233456678899999999999987
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCC-----CcccCCCCCeE--EEecCcceEEecCCCcCHHHHHHhhcccCCCCcC
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEK-----GARKHPRGDSI--QMDTKDILFICGGAFVDLEKTISERRQDSSIGFG 483 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~-----g~~~~~~~~~i--~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~ 483 (678)
+|+.||+.||...+.+... +.........+ .--..++.+|++++.. +
T Consensus 191 ---------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~-p---------------- 244 (531)
T TIGR02902 191 ---------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRN-P---------------- 244 (531)
T ss_pred ---------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCC-c----------------
Confidence 9999999999544433211 00000000000 0012344555544311 0
Q ss_pred cccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCc
Q 005762 484 APVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNV 563 (678)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv 563 (678)
..+.|++++|+. .+.|.+|+.+|+.+|++.. .+ ..
T Consensus 245 -------------------------------~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~----a~---------k~ 279 (531)
T TIGR02902 245 -------------------------------EEIPPALRSRCV-EIFFRPLLDEEIKEIAKNA----AE---------KI 279 (531)
T ss_pred -------------------------------ccCChHHhhhhh-eeeCCCCCHHHHHHHHHHH----HH---------Hc
Confidence 016678888875 4689999999999998852 11 12
Q ss_pred eeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 005762 564 KLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (678)
Q Consensus 564 ~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~ 601 (678)
.+.+++++++.|+.+++ +.|.+.++++.+...++
T Consensus 280 ~i~is~~al~~I~~y~~----n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 280 GINLEKHALELIVKYAS----NGREAVNIVQLAAGIAL 313 (531)
T ss_pred CCCcCHHHHHHHHHhhh----hHHHHHHHHHHHHHHHh
Confidence 35699999999998765 57999999998876554
No 71
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.8e-15 Score=156.19 Aligned_cols=238 Identities=20% Similarity=0.319 Sum_probs=155.2
Q ss_pred CCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHH
Q 005762 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (678)
Q Consensus 261 ~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~ 340 (678)
...|.+|...+++ +-|.+.+|+.|.+.|.-..++. . ++. ...+..+..+|||+||||||||.
T Consensus 81 ~v~p~~I~v~f~D-IggLe~v~~~L~e~VilPlr~p---e-------------lF~-~g~Ll~p~kGiLL~GPpG~GKTm 142 (386)
T KOG0737|consen 81 VVPPSEIGVSFDD-IGGLEEVKDALQELVILPLRRP---E-------------LFA-KGKLLRPPKGILLYGPPGTGKTM 142 (386)
T ss_pred ccchhhceeehhh-ccchHHHHHHHHHHHhhcccch---h-------------hhc-ccccccCCccceecCCCCchHHH
Confidence 4456677767776 7999999999999986432221 1 111 12233367899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHH
Q 005762 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (678)
Q Consensus 341 LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~v 420 (678)
+|+++|+..+..|+.++++.+++ .|+|+. ++.+..+|..+.. -+|+||||||||.+...|.+. -+....-.
T Consensus 143 lAKA~Akeaga~fInv~~s~lt~-KWfgE~-eKlv~AvFslAsK----l~P~iIFIDEvds~L~~R~s~---dHEa~a~m 213 (386)
T KOG0737|consen 143 LAKAIAKEAGANFINVSVSNLTS-KWFGEA-QKLVKAVFSLASK----LQPSIIFIDEVDSFLGQRRST---DHEATAMM 213 (386)
T ss_pred HHHHHHHHcCCCcceeeccccch-hhHHHH-HHHHHHHHhhhhh----cCcceeehhhHHHHHhhcccc---hHHHHHHH
Confidence 99999999999999999999995 799998 8888888877653 389999999999998875321 11111123
Q ss_pred HHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhH
Q 005762 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (678)
Q Consensus 421 q~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~ 500 (678)
-+.|...=||. ..++....+++..+|. +.+|++
T Consensus 214 K~eFM~~WDGl---------~s~~~~rVlVlgATNR-------P~DlDe------------------------------- 246 (386)
T KOG0737|consen 214 KNEFMALWDGL---------SSKDSERVLVLGATNR-------PFDLDE------------------------------- 246 (386)
T ss_pred HHHHHHHhccc---------cCCCCceEEEEeCCCC-------CccHHH-------------------------------
Confidence 33333333432 2222223333333333 223333
Q ss_pred HHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhc
Q 005762 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (678)
Q Consensus 501 ~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~ 580 (678)
.++.|++..+++.-++.++..+||+.. ++..+++-.| -+..|+..+
T Consensus 247 -------------------AiiRR~p~rf~V~lP~~~qR~kILkvi-----------Lk~e~~e~~v---D~~~iA~~t- 292 (386)
T KOG0737|consen 247 -------------------AIIRRLPRRFHVGLPDAEQRRKILKVI-----------LKKEKLEDDV---DLDEIAQMT- 292 (386)
T ss_pred -------------------HHHHhCcceeeeCCCchhhHHHHHHHH-----------hcccccCccc---CHHHHHHhc-
Confidence 345667777777777888999998842 1122333222 245566653
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 005762 581 AKNTGARGLRAILESILTEAMYEIPDV 607 (678)
Q Consensus 581 ~~~~GAR~Lr~iIE~il~~a~~~~p~~ 607 (678)
.++..+.|+.+........+.++...
T Consensus 293 -~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 293 -EGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred -CCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 57777889888777666666665544
No 72
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.62 E-value=2.3e-15 Score=177.78 Aligned_cols=192 Identities=21% Similarity=0.329 Sum_probs=136.9
Q ss_pred HhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 269 ~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+. |+||++.++.+.+.|.+. .+.|+||+||||||||++|+.+|+.
T Consensus 179 ~~l~~-~igr~~ei~~~~~~L~~~-------------------------------~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 179 GKIDP-LIGREDELERTIQVLCRR-------------------------------KKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCCCc-ccCcHHHHHHHHHHHhcC-------------------------------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 34554 899999999887766411 2479999999999999999999998
Q ss_pred h----------CCCEEEEecccccc-ccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCch
Q 005762 349 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (678)
Q Consensus 349 l----------~~~fv~id~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~ 417 (678)
+ +..++.+|++.+.. ..|.|+. +..+.+++..+.. ..+.||||||||.+.......+ +.
T Consensus 227 ~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~~-----~~ 296 (731)
T TIGR02639 227 IAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEK----EPNAILFIDEIHTIVGAGATSG-----GS 296 (731)
T ss_pred HHhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhc----cCCeEEEEecHHHHhccCCCCC-----cc
Confidence 7 67799999988764 4577765 7788888876543 2568999999999986532111 11
Q ss_pred hHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCch
Q 005762 418 EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDA 497 (678)
Q Consensus 418 ~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~ 497 (678)
.++++.|++.|+. .++.+|.+++..+..+.+.
T Consensus 297 ~~~~~~L~~~l~~-----------------------g~i~~IgaTt~~e~~~~~~------------------------- 328 (731)
T TIGR02639 297 MDASNLLKPALSS-----------------------GKLRCIGSTTYEEYKNHFE------------------------- 328 (731)
T ss_pred HHHHHHHHHHHhC-----------------------CCeEEEEecCHHHHHHHhh-------------------------
Confidence 3478889888872 1234555554322211111
Q ss_pred HhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHH
Q 005762 498 AVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAK 577 (678)
Q Consensus 498 ~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~ 577 (678)
..+.|.+||. .|.+.+++.++..+|++. +..+|.. ...+.++++++..++.
T Consensus 329 -------------------~d~al~rRf~-~i~v~~p~~~~~~~il~~----~~~~~e~-----~~~v~i~~~al~~~~~ 379 (731)
T TIGR02639 329 -------------------KDRALSRRFQ-KIDVGEPSIEETVKILKG----LKEKYEE-----FHHVKYSDEALEAAVE 379 (731)
T ss_pred -------------------hhHHHHHhCc-eEEeCCCCHHHHHHHHHH----HHHHHHh-----ccCcccCHHHHHHHHH
Confidence 4667888997 579999999999999985 3334432 2346799999999988
Q ss_pred hh
Q 005762 578 KA 579 (678)
Q Consensus 578 ~a 579 (678)
.+
T Consensus 380 ls 381 (731)
T TIGR02639 380 LS 381 (731)
T ss_pred hh
Confidence 75
No 73
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.62 E-value=1.3e-14 Score=169.01 Aligned_cols=189 Identities=25% Similarity=0.339 Sum_probs=134.6
Q ss_pred CHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHH
Q 005762 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (678)
Q Consensus 263 ~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LA 342 (678)
.+..+...+++ |.|.+.+++.|...+.. ++. .......+ ...+.++||+||||||||++|
T Consensus 143 ~~~~~~~~~~d-i~g~~~~~~~l~~i~~~-~~~---~~~~~~~~---------------~~~~~gill~G~~G~GKt~~~ 202 (644)
T PRK10733 143 TEDQIKTTFAD-VAGCDEAKEEVAELVEY-LRE---PSRFQKLG---------------GKIPKGVLMVGPPGTGKTLLA 202 (644)
T ss_pred CchhhhCcHHH-HcCHHHHHHHHHHHHHH-hhC---HHHHHhcC---------------CCCCCcEEEECCCCCCHHHHH
Confidence 44556666666 79999999999887752 110 00000000 012467999999999999999
Q ss_pred HHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHH
Q 005762 343 KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (678)
Q Consensus 343 ralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~ 422 (678)
+++|+.++.+|+.++++++.. .|+|.. ...+..+|..+.. ..++||||||||.+...+.....+.+...+.+.+
T Consensus 203 ~~~a~~~~~~f~~is~~~~~~-~~~g~~-~~~~~~~f~~a~~----~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln 276 (644)
T PRK10733 203 KAIAGEAKVPFFTISGSDFVE-MFVGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 276 (644)
T ss_pred HHHHHHcCCCEEEEehHHhHH-hhhccc-HHHHHHHHHHHHh----cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHH
Confidence 999999999999999998874 477776 5677788876533 4789999999999988765433344445566888
Q ss_pred HHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHH
Q 005762 423 ALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSS 502 (678)
Q Consensus 423 ~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ 502 (678)
.||..|||.. ....+++|+++|..+
T Consensus 277 ~lL~~mdg~~-------------------~~~~vivIaaTN~p~------------------------------------ 301 (644)
T PRK10733 277 QMLVEMDGFE-------------------GNEGIIVIAATNRPD------------------------------------ 301 (644)
T ss_pred HHHHhhhccc-------------------CCCCeeEEEecCChh------------------------------------
Confidence 8998888631 123467777766432
Q ss_pred HHhhcchhhhhhhcCCcccc--cccceEEecCCcCHHHHHHHHhc
Q 005762 503 LLESVESSDLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 503 ll~~v~~edLi~~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
.+.|.++ +|||..+.+..++.++..+|++.
T Consensus 302 -------------~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~ 333 (644)
T PRK10733 302 -------------VLDPALLRPGRFDRQVVVGLPDVRGREQILKV 333 (644)
T ss_pred -------------hcCHHHhCCcccceEEEcCCCCHHHHHHHHHH
Confidence 0334444 69999999999999999999875
No 74
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.61 E-value=1.1e-14 Score=170.86 Aligned_cols=218 Identities=19% Similarity=0.309 Sum_probs=150.9
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHH
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYK 377 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~ 377 (678)
.|.++.|..+.+....++....+|||+|++|||||++|++|+... +.||+.+||..+.+. .++|.... .+..
T Consensus 379 iG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~-~~~g 457 (686)
T PRK15429 379 IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERG-AFTG 457 (686)
T ss_pred eecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccc-cccc
Confidence 578888998888888888888999999999999999999999876 469999999976421 12222100 0000
Q ss_pred HHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcc
Q 005762 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDI 456 (678)
Q Consensus 378 l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNi 456 (678)
......+.++.+.+|+||||||+.+... +|..|+.+|+ +....+... . .-..++
T Consensus 458 ~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~---~--------~~~~~~ 512 (686)
T PRK15429 458 ASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQPKLLRVLQEQEFERLGSN---K--------IIQTDV 512 (686)
T ss_pred cccchhhHHHhcCCCeEEEechhhCCHH--------------HHHHHHHHHHhCCEEeCCCC---C--------cccceE
Confidence 0011123345567899999999999887 9999999998 333322111 1 112345
Q ss_pred eEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcC
Q 005762 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALT 535 (678)
Q Consensus 457 lfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Ls 535 (678)
.+|++++. ++++.+.+ ..|.++|..|+.. .|.++||.
T Consensus 513 RiI~~t~~-~l~~~~~~-----------------------------------------~~f~~~L~~~l~~~~i~lPpLr 550 (686)
T PRK15429 513 RLIAATNR-DLKKMVAD-----------------------------------------REFRSDLYYRLNVFPIHLPPLR 550 (686)
T ss_pred EEEEeCCC-CHHHHHHc-----------------------------------------CcccHHHHhccCeeEEeCCChh
Confidence 66766653 34433322 2377788888876 58999998
Q ss_pred H--HHHHHHHhchHHHHHHHHHHHHhcCCcee-eeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 536 E--DQLVKVLTEPKNALGKQYKRLFSMNNVKL-HFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 536 e--eeL~~Il~~~ln~L~~q~~~~~~~~gv~l-~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
+ +|+..++.. ++.++...+ +..+ .|++++++.|..+.| ..|.|+|+++|++++..
T Consensus 551 eR~~Di~~L~~~----~l~~~~~~~---~~~~~~~s~~al~~L~~y~W--PGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 551 ERPEDIPLLVKA----FTFKIARRM---GRNIDSIPAETLRTLSNMEW--PGNVRELENVIERAVLL 608 (686)
T ss_pred hhHhHHHHHHHH----HHHHHHHHc---CCCCCCcCHHHHHHHHhCCC--CCcHHHHHHHHHHHHHh
Confidence 7 677666664 444444432 3344 599999999999877 77889999999998864
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=8.6e-15 Score=167.08 Aligned_cols=184 Identities=24% Similarity=0.364 Sum_probs=123.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
||||+++++.|..++.+. + ....+||+||+|||||++|+.||+.+++
T Consensus 18 VIGQe~vv~~L~~al~~g--R----------------------------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p 67 (700)
T PRK12323 18 LVGQEHVVRALTHALEQQ--R----------------------------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA 67 (700)
T ss_pred HcCcHHHHHHHHHHHHhC--C----------------------------CceEEEEECCCCCCHHHHHHHHHHHhcCCCc
Confidence 899999999998887521 0 0234799999999999999999999975
Q ss_pred --------------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhh
Q 005762 352 --------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 352 --------------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
.++++|..+- .| ...+++++....+.-......|+||||+|.|+..
T Consensus 68 ~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~-----~g---VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~ 139 (700)
T PRK12323 68 DGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASN-----RG---VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH 139 (700)
T ss_pred cccccCCCCCCcccHHHHHHHcCCCCcceEeccccc-----CC---HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH
Confidence 2333333211 11 2334555544333222345579999999999876
Q ss_pred hccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcc
Q 005762 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (678)
Q Consensus 406 ~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~ 485 (678)
.+|+||+.||. ...+++||++++.. .
T Consensus 140 --------------AaNALLKTLEE---------------------PP~~v~FILaTtep--~----------------- 165 (700)
T PRK12323 140 --------------AFNAMLKTLEE---------------------PPEHVKFILATTDP--Q----------------- 165 (700)
T ss_pred --------------HHHHHHHhhcc---------------------CCCCceEEEEeCCh--H-----------------
Confidence 89999999984 11244666655421 1
Q ss_pred cccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCcee
Q 005762 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (678)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l 565 (678)
.+.+.+++|+ ..+.|..++.+++.+.+... +...+ +
T Consensus 166 ------------------------------kLlpTIrSRC-q~f~f~~ls~eei~~~L~~I-----------l~~Eg--i 201 (700)
T PRK12323 166 ------------------------------KIPVTVLSRC-LQFNLKQMPPGHIVSHLDAI-----------LGEEG--I 201 (700)
T ss_pred ------------------------------hhhhHHHHHH-HhcccCCCChHHHHHHHHHH-----------HHHcC--C
Confidence 1334455555 35799999999988877642 11223 4
Q ss_pred eeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 566 HFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 566 ~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
.+++++++.|++.+ +...|...++++..+
T Consensus 202 ~~d~eAL~~IA~~A---~Gs~RdALsLLdQai 230 (700)
T PRK12323 202 AHEVNALRLLAQAA---QGSMRDALSLTDQAI 230 (700)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 58899999999985 566777777766544
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=9.5e-15 Score=164.11 Aligned_cols=184 Identities=27% Similarity=0.439 Sum_probs=124.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
|+||+++++.|..++.+. . .+..+||+||||||||++|+++|+.++.
T Consensus 16 ivGq~~i~~~L~~~i~~~-------~-----------------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~ 65 (472)
T PRK14962 16 VVGQDHVKKLIINALKKN-------S-----------------------ISHAYIFAGPRGTGKTTVARILAKSLNCENR 65 (472)
T ss_pred ccCcHHHHHHHHHHHHcC-------C-----------------------CCeEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 899999999887776421 0 1245899999999999999999999864
Q ss_pred ---------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 352 ---------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 352 ---------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
.++.++++.- .|. ..++++...+...-......||||||+|.+...
T Consensus 66 ~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~-----~gi---d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~----- 132 (472)
T PRK14962 66 KGVEPCNECRACRSIDEGTFMDVIELDAASN-----RGI---DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE----- 132 (472)
T ss_pred CCCCCCcccHHHHHHhcCCCCccEEEeCccc-----CCH---HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-----
Confidence 3555555421 121 233444333322112235579999999999765
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.++.||+.||.. ..+++||++++.. .
T Consensus 133 ---------a~~~LLk~LE~p---------------------~~~vv~Ilattn~--~---------------------- 158 (472)
T PRK14962 133 ---------AFNALLKTLEEP---------------------PSHVVFVLATTNL--E---------------------- 158 (472)
T ss_pred ---------HHHHHHHHHHhC---------------------CCcEEEEEEeCCh--H----------------------
Confidence 899999999831 1123455433310 0
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+.+|+. ++.|.+++.+++..++... . ...+ +.++++
T Consensus 159 -------------------------kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i----~-------~~eg--i~i~~e 199 (472)
T PRK14962 159 -------------------------KVPPTIISRCQ-VIEFRNISDELIIKRLQEV----A-------EAEG--IEIDRE 199 (472)
T ss_pred -------------------------hhhHHHhcCcE-EEEECCccHHHHHHHHHHH----H-------HHcC--CCCCHH
Confidence 13455667774 6899999999998887742 1 1223 468999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++.+|++.+ +.++|.+-+.++.++
T Consensus 200 al~~Ia~~s---~GdlR~aln~Le~l~ 223 (472)
T PRK14962 200 ALSFIAKRA---SGGLRDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 999999975 678888888888755
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.4e-14 Score=162.52 Aligned_cols=184 Identities=23% Similarity=0.320 Sum_probs=125.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
||||+.+++.|..++.+. . ....+||+||+|||||++|+++|+.+++
T Consensus 17 VIGQe~vv~~L~~aI~~g-------r-----------------------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~ 66 (702)
T PRK14960 17 LVGQNHVSRALSSALERG-------R-----------------------LHHAYLFTGTRGVGKTTIARILAKCLNCETG 66 (702)
T ss_pred hcCcHHHHHHHHHHHHcC-------C-----------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC
Confidence 899999999998887411 0 1246799999999999999999999865
Q ss_pred ---------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 352 ---------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 352 ---------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
.++.+|+++-. + ...+++++....+.-......|+||||+|.|+..
T Consensus 67 ~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~-----~---VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~----- 133 (702)
T PRK14960 67 VTSTPCEVCATCKAVNEGRFIDLIEIDAASRT-----K---VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH----- 133 (702)
T ss_pred CCCCCCccCHHHHHHhcCCCCceEEecccccC-----C---HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-----
Confidence 34445543211 1 2345555554433322345579999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.. ..++.||++++.. .
T Consensus 134 ---------A~NALLKtLEEP---------------------P~~v~FILaTtd~--~---------------------- 159 (702)
T PRK14960 134 ---------SFNALLKTLEEP---------------------PEHVKFLFATTDP--Q---------------------- 159 (702)
T ss_pred ---------HHHHHHHHHhcC---------------------CCCcEEEEEECCh--H----------------------
Confidence 899999999831 1223555544311 0
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+++|+ .++.|.+++.+++.+.+... +... .+.++++
T Consensus 160 -------------------------kIp~TIlSRC-q~feFkpLs~eEI~k~L~~I-----------l~kE--gI~id~e 200 (702)
T PRK14960 160 -------------------------KLPITVISRC-LQFTLRPLAVDEITKHLGAI-----------LEKE--QIAADQD 200 (702)
T ss_pred -------------------------hhhHHHHHhh-heeeccCCCHHHHHHHHHHH-----------HHHc--CCCCCHH
Confidence 0223444555 35799999999998887742 2222 3569999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++..|++.+ +.+.|.+-++++.++
T Consensus 201 AL~~IA~~S---~GdLRdALnLLDQaI 224 (702)
T PRK14960 201 AIWQIAESA---QGSLRDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999986 667888888877655
No 78
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.59 E-value=1.2e-14 Score=178.09 Aligned_cols=190 Identities=17% Similarity=0.248 Sum_probs=122.4
Q ss_pred ccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccccccc---c------cc-------------------------
Q 005762 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAG---Y------VG------------------------- 368 (678)
Q Consensus 323 ~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sg---y------vG------------------------- 368 (678)
.++++|||+||||||||+||+++|..+++||+.++++++.+.. | +|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 4578999999999999999999999999999999999987421 1 11
Q ss_pred ------cch-HHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcc
Q 005762 369 ------EDV-ESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGAR 441 (678)
Q Consensus 369 ------~~~-~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~ 441 (678)
..+ ...++.+|+.|.. ..||||||||||.+.... +.....+.||..|+|....
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk----~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~------- 1767 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKA----MSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCER------- 1767 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHH----CCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccccc-------
Confidence 111 1125556666543 589999999999997651 1122478899999852110
Q ss_pred cCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCccc
Q 005762 442 KHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEF 521 (678)
Q Consensus 442 ~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pef 521 (678)
-.+.++++|+++|..+ .+.|+|
T Consensus 1768 ---------~s~~~VIVIAATNRPD-------------------------------------------------~LDPAL 1789 (2281)
T CHL00206 1768 ---------CSTRNILVIASTHIPQ-------------------------------------------------KVDPAL 1789 (2281)
T ss_pred ---------CCCCCEEEEEeCCCcc-------------------------------------------------cCCHhH
Confidence 1234566776666432 155666
Q ss_pred c--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 522 V--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 522 l--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
+ +|||..|.+..++..+..+++.. +. + ..++.+.-...-++.||+.+ .++.+++|.+++..++.-
T Consensus 1790 LRPGRFDR~I~Ir~Pd~p~R~kiL~I----Ll--~-----tkg~~L~~~~vdl~~LA~~T--~GfSGADLanLvNEAali 1856 (2281)
T CHL00206 1790 IAPNKLNTCIKIRRLLIPQQRKHFFT----LS--Y-----TRGFHLEKKMFHTNGFGSIT--MGSNARDLVALTNEALSI 1856 (2281)
T ss_pred cCCCCCCeEEEeCCCCchhHHHHHHH----HH--h-----hcCCCCCcccccHHHHHHhC--CCCCHHHHHHHHHHHHHH
Confidence 6 59999999988887766666542 11 1 11222211111245566653 466667777777766665
Q ss_pred HHhc
Q 005762 600 AMYE 603 (678)
Q Consensus 600 a~~~ 603 (678)
++.+
T Consensus 1857 Airq 1860 (2281)
T CHL00206 1857 SITQ 1860 (2281)
T ss_pred HHHc
Confidence 5543
No 79
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=3.4e-14 Score=166.56 Aligned_cols=170 Identities=26% Similarity=0.372 Sum_probs=116.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhh-hcCcEEEEcCccchhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA-AQQGMVYIDEVDKITK 404 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~-a~~gILfIDEIDkl~~ 404 (678)
.+++|+||||||||++|+++|+.++.+|+.+++.... . ..+...+......+.. ....||||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------V---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------h---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 5899999999999999999999999999998886321 1 1122222222111111 2456999999999987
Q ss_pred hhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCc
Q 005762 405 KAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (678)
Q Consensus 405 ~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~ 484 (678)
. .|+.|++.+|.. .+++|++++....
T Consensus 124 ~--------------qQdaLL~~lE~g-----------------------~IiLI~aTTenp~----------------- 149 (725)
T PRK13341 124 A--------------QQDALLPWVENG-----------------------TITLIGATTENPY----------------- 149 (725)
T ss_pred H--------------HHHHHHHHhcCc-----------------------eEEEEEecCCChH-----------------
Confidence 6 899999998831 1244443321100
Q ss_pred ccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCce
Q 005762 485 PVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVK 564 (678)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~ 564 (678)
..+.+.+++|. .++.|++|+.+++..|+...+. ++...+. ...
T Consensus 150 ------------------------------~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~----~~~~~~g--~~~ 192 (725)
T PRK13341 150 ------------------------------FEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQ----DKERGYG--DRK 192 (725)
T ss_pred ------------------------------hhhhhHhhccc-cceecCCCCHHHHHHHHHHHHH----HHHhhcC--Ccc
Confidence 01345566664 3578999999999999986322 2222221 234
Q ss_pred eeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 565 LHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 565 l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
+.+++++++.|++++ ..++|.+.++++.++.
T Consensus 193 v~I~deaL~~La~~s---~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 193 VDLEPEAEKHLVDVA---NGDARSLLNALELAVE 223 (725)
T ss_pred cCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 679999999999986 6789999999998763
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=99.58 E-value=1.4e-14 Score=155.26 Aligned_cols=191 Identities=24% Similarity=0.320 Sum_probs=122.8
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
.+|+.+.+ |+||+++++.|...+.+. ...|+||+||||||||++
T Consensus 7 yrP~~l~~-----~~g~~~~~~~L~~~~~~~-------------------------------~~~~lll~Gp~G~GKTtl 50 (319)
T PLN03025 7 YRPTKLDD-----IVGNEDAVSRLQVIARDG-------------------------------NMPNLILSGPPGTGKTTS 50 (319)
T ss_pred cCCCCHHH-----hcCcHHHHHHHHHHHhcC-------------------------------CCceEEEECCCCCCHHHH
Confidence 45554443 799999999887665310 125799999999999999
Q ss_pred HHHHHHHhCC-----CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCc
Q 005762 342 AKTLARHVNV-----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (678)
Q Consensus 342 AralA~~l~~-----~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s 416 (678)
|+++|+.+.. .++.+++++.. |.+.-....+.+.............||+|||+|.++..
T Consensus 51 a~~la~~l~~~~~~~~~~eln~sd~~-----~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~----------- 114 (319)
T PLN03025 51 ILALAHELLGPNYKEAVLELNASDDR-----GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG----------- 114 (319)
T ss_pred HHHHHHHHhcccCccceeeecccccc-----cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------
Confidence 9999998832 35666665532 22211111112222111111124569999999999876
Q ss_pred hhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCc
Q 005762 417 GEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTD 496 (678)
Q Consensus 417 ~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~ 496 (678)
.|++|++.||.. -.+ ..||++++...
T Consensus 115 ---aq~aL~~~lE~~-------------------~~~--t~~il~~n~~~------------------------------ 140 (319)
T PLN03025 115 ---AQQALRRTMEIY-------------------SNT--TRFALACNTSS------------------------------ 140 (319)
T ss_pred ---HHHHHHHHHhcc-------------------cCC--ceEEEEeCCcc------------------------------
Confidence 899999999821 011 22344333210
Q ss_pred hHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHH
Q 005762 497 AAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIA 576 (678)
Q Consensus 497 ~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La 576 (678)
.+.+.+.+|+. ++.|.+++.+++.+++... ++..+ +.++++++++|+
T Consensus 141 -------------------~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i-----------~~~eg--i~i~~~~l~~i~ 187 (319)
T PLN03025 141 -------------------KIIEPIQSRCA-IVRFSRLSDQEILGRLMKV-----------VEAEK--VPYVPEGLEAII 187 (319)
T ss_pred -------------------ccchhHHHhhh-cccCCCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHH
Confidence 14456667763 6899999999998887641 12234 458999999999
Q ss_pred HhhcCCCCCHHHHHHHHH
Q 005762 577 KKATAKNTGARGLRAILE 594 (678)
Q Consensus 577 ~~a~~~~~GAR~Lr~iIE 594 (678)
+.+ +.+.|.+-+.+|
T Consensus 188 ~~~---~gDlR~aln~Lq 202 (319)
T PLN03025 188 FTA---DGDMRQALNNLQ 202 (319)
T ss_pred HHc---CCCHHHHHHHHH
Confidence 985 566777777777
No 81
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=6.3e-15 Score=150.21 Aligned_cols=128 Identities=27% Similarity=0.415 Sum_probs=97.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|-|.+..++.|.++|.-.. .+..+...+| ..++.++|+|||||||||++||+.|...+..|+
T Consensus 173 iGGldkQIqELvEAiVLpm---th~ekF~~lg---------------i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL 234 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPM---THKEKFENLG---------------IRPPKGVLMYGPPGTGKTLMARACAAQTNATFL 234 (424)
T ss_pred cccHHHHHHHHHHHhcccc---ccHHHHHhcC---------------CCCCCceEeeCCCCCcHHHHHHHHHHhccchHH
Confidence 7899999999999985221 1111111111 124689999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.+-...|.+. |+|.. .+.++..|.-+.. ..++||||||+|.+..++...+...| +++|..+|++|.
T Consensus 235 KLAgPQLVQM-fIGdG-AkLVRDAFaLAKE----kaP~IIFIDElDAIGtKRfDSek~GD---REVQRTMLELLN 300 (424)
T KOG0652|consen 235 KLAGPQLVQM-FIGDG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKAGD---REVQRTMLELLN 300 (424)
T ss_pred HhcchHHHhh-hhcch-HHHHHHHHHHhhc----cCCeEEEEechhhhcccccccccccc---HHHHHHHHHHHH
Confidence 9999999864 88988 7888888876654 37899999999999988765444444 458887777764
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.8e-14 Score=159.89 Aligned_cols=184 Identities=27% Similarity=0.348 Sum_probs=124.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
||||+.+++.|..++... + .+..+||+||+|||||++|+++|+.+++.
T Consensus 18 ivGq~~v~~~L~~~~~~~--~----------------------------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~ 67 (509)
T PRK14958 18 VIGQAPVVRALSNALDQQ--Y----------------------------LHHAYLFTGTRGVGKTTISRILAKCLNCEKG 67 (509)
T ss_pred hcCCHHHHHHHHHHHHhC--C----------------------------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 899999999998887521 0 02347999999999999999999999652
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
++++|+.+- .+ ...++++.....+.-..+...|+||||+|.|+..
T Consensus 68 ~~~~pCg~C~~C~~i~~g~~~d~~eidaas~-----~~---v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~----- 134 (509)
T PRK14958 68 VSANPCNDCENCREIDEGRFPDLFEVDAASR-----TK---VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH----- 134 (509)
T ss_pred CCcccCCCCHHHHHHhcCCCceEEEEccccc-----CC---HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-----
Confidence 455554321 12 2234555544333222345569999999999886
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ..++.||++++ +..+
T Consensus 135 ---------a~naLLk~LEep---------------------p~~~~fIlatt--d~~k--------------------- 161 (509)
T PRK14958 135 ---------SFNALLKTLEEP---------------------PSHVKFILATT--DHHK--------------------- 161 (509)
T ss_pred ---------HHHHHHHHHhcc---------------------CCCeEEEEEEC--ChHh---------------------
Confidence 899999999941 12235555433 1111
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+.+.+++|+ .++.|.+++.+++.+.+.. .+...+ +.++++
T Consensus 162 --------------------------l~~tI~SRc-~~~~f~~l~~~~i~~~l~~-----------il~~eg--i~~~~~ 201 (509)
T PRK14958 162 --------------------------LPVTVLSRC-LQFHLAQLPPLQIAAHCQH-----------LLKEEN--VEFENA 201 (509)
T ss_pred --------------------------chHHHHHHh-hhhhcCCCCHHHHHHHHHH-----------HHHHcC--CCCCHH
Confidence 233455555 3578999999998877663 122234 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++..|++.+ +.+.|.+.++++..+
T Consensus 202 al~~ia~~s---~GslR~al~lLdq~i 225 (509)
T PRK14958 202 ALDLLARAA---NGSVRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 999999986 567888888887764
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.8e-14 Score=166.28 Aligned_cols=184 Identities=25% Similarity=0.350 Sum_probs=122.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE-
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF- 353 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f- 353 (678)
||||+.+++.|..++... ++ ...+||+||+|||||++|++||+.+++..
T Consensus 18 IIGQe~Iv~~LknaI~~~--rl----------------------------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~ 67 (944)
T PRK14949 18 MVGQSHVLHALTNALTQQ--RL----------------------------HHAYLFTGTRGVGKTSLARLFAKGLNCEQG 67 (944)
T ss_pred hcCcHHHHHHHHHHHHhC--CC----------------------------CeEEEEECCCCCCHHHHHHHHHHhccCccC
Confidence 899999999988777421 00 13369999999999999999999997531
Q ss_pred -----------------------EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 354 -----------------------VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 354 -----------------------v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
+.++..+ ..+ ...++.+.......-......|+||||+|+|...
T Consensus 68 ~~~~pCg~C~sC~~i~~g~~~DviEidAas-----~~k---VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e----- 134 (944)
T PRK14949 68 VTATPCGVCSSCVEIAQGRFVDLIEVDAAS-----RTK---VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS----- 134 (944)
T ss_pred CCCCCCCCchHHHHHhcCCCceEEEecccc-----ccC---HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH-----
Confidence 1122211 111 1234444433322222245579999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ..++.||++++...
T Consensus 135 ---------AqNALLKtLEEP---------------------P~~vrFILaTTe~~------------------------ 160 (944)
T PRK14949 135 ---------SFNALLKTLEEP---------------------PEHVKFLLATTDPQ------------------------ 160 (944)
T ss_pred ---------HHHHHHHHHhcc---------------------CCCeEEEEECCCch------------------------
Confidence 999999999931 12335555433110
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+++|+ .++.|.+|+.+++.+.|... .. .. .+.++++
T Consensus 161 -------------------------kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~i----l~-------~E--gI~~ede 201 (944)
T PRK14949 161 -------------------------KLPVTVLSRC-LQFNLKSLTQDEIGTQLNHI----LT-------QE--QLPFEAE 201 (944)
T ss_pred -------------------------hchHHHHHhh-eEEeCCCCCHHHHHHHHHHH----HH-------Hc--CCCCCHH
Confidence 1334455565 46899999999999887742 11 12 3569999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+++.|++.+ ++..|..-++++..+
T Consensus 202 AL~lIA~~S---~Gd~R~ALnLLdQal 225 (944)
T PRK14949 202 ALTLLAKAA---NGSMRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999985 666888878777655
No 84
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=5.2e-14 Score=166.81 Aligned_cols=184 Identities=25% Similarity=0.307 Sum_probs=122.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
||||+.+++.|..++.+. + ....+||+||+|||||++|++||+.+++.
T Consensus 17 iiGqe~v~~~L~~~i~~~--r----------------------------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~ 66 (824)
T PRK07764 17 VIGQEHVTEPLSTALDSG--R----------------------------INHAYLFSGPRGCGKTSSARILARSLNCVEG 66 (824)
T ss_pred hcCcHHHHHHHHHHHHhC--C----------------------------CCceEEEECCCCCCHHHHHHHHHHHhCcccC
Confidence 899999999998887521 0 01338999999999999999999999642
Q ss_pred ------------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcc
Q 005762 353 ------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAES 408 (678)
Q Consensus 353 ------------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~ 408 (678)
|+.+|..+. .+ ...++++.....+.-......||||||+|+|+..
T Consensus 67 ~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~-----~~---Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~--- 135 (824)
T PRK07764 67 PTSTPCGECDSCVALAPGGPGSLDVTEIDAASH-----GG---VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ--- 135 (824)
T ss_pred CCCCCCcccHHHHHHHcCCCCCCcEEEeccccc-----CC---HHHHHHHHHHHHhchhcCCceEEEEechhhcCHH---
Confidence 223332211 11 2233443333222222245679999999999886
Q ss_pred ccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccc
Q 005762 409 LNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRA 488 (678)
Q Consensus 409 ~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~ 488 (678)
.++.||++||.- ..+++||++++. .++
T Consensus 136 -----------a~NaLLK~LEEp---------------------P~~~~fIl~tt~--~~k------------------- 162 (824)
T PRK07764 136 -----------GFNALLKIVEEP---------------------PEHLKFIFATTE--PDK------------------- 162 (824)
T ss_pred -----------HHHHHHHHHhCC---------------------CCCeEEEEEeCC--hhh-------------------
Confidence 999999999941 123456664431 111
Q ss_pred ccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeC
Q 005762 489 NMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFT 568 (678)
Q Consensus 489 ~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t 568 (678)
+.+.+.+|. .++.|..++.+++.++|... +...+ +.++
T Consensus 163 ----------------------------Ll~TIrSRc-~~v~F~~l~~~~l~~~L~~i-----------l~~EG--v~id 200 (824)
T PRK07764 163 ----------------------------VIGTIRSRT-HHYPFRLVPPEVMRGYLERI-----------CAQEG--VPVE 200 (824)
T ss_pred ----------------------------hhHHHHhhe-eEEEeeCCCHHHHHHHHHHH-----------HHHcC--CCCC
Confidence 223344444 36799999999999887641 22234 4589
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 569 EKALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 569 ~eal~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++++.+|++.+ +...|.+.+.|++++
T Consensus 201 ~eal~lLa~~s---gGdlR~Al~eLEKLi 226 (824)
T PRK07764 201 PGVLPLVIRAG---GGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999985 556888888888876
No 85
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=3.8e-14 Score=163.50 Aligned_cols=184 Identities=24% Similarity=0.329 Sum_probs=123.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
||||+.+++.|..++... + -...+||+||+|||||++|+++|+.+++.
T Consensus 18 ivGQe~vv~~L~~~l~~~--r----------------------------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~ 67 (647)
T PRK07994 18 VVGQEHVLTALANALDLG--R----------------------------LHHAYLFSGTRGVGKTTIARLLAKGLNCETG 67 (647)
T ss_pred hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHhhhhccC
Confidence 899999999998877521 0 01346999999999999999999999662
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
|+.+|+.+ ..+ ...++++.....+.-......|+||||+|+|+..
T Consensus 68 ~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~---VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~----- 134 (647)
T PRK07994 68 ITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTK---VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH----- 134 (647)
T ss_pred CCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCC---HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH-----
Confidence 33333322 112 2234444443322212234569999999999887
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ..+++||++++..
T Consensus 135 ---------a~NALLKtLEEP---------------------p~~v~FIL~Tt~~------------------------- 159 (647)
T PRK07994 135 ---------SFNALLKTLEEP---------------------PEHVKFLLATTDP------------------------- 159 (647)
T ss_pred ---------HHHHHHHHHHcC---------------------CCCeEEEEecCCc-------------------------
Confidence 999999999941 1234566654311
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
..+.+.+++|+ ..+.|.+++.+++.+.|... . ... .+.++++
T Consensus 160 ------------------------~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~i----l-------~~e--~i~~e~~ 201 (647)
T PRK07994 160 ------------------------QKLPVTILSRC-LQFHLKALDVEQIRQQLEHI----L-------QAE--QIPFEPR 201 (647)
T ss_pred ------------------------cccchHHHhhh-eEeeCCCCCHHHHHHHHHHH----H-------HHc--CCCCCHH
Confidence 01445666775 57899999999998887742 1 122 3568999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++..|++.+ .+..|...++++..+
T Consensus 202 aL~~Ia~~s---~Gs~R~Al~lldqai 225 (647)
T PRK07994 202 ALQLLARAA---DGSMRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999985 556777777776544
No 86
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.56 E-value=3.8e-14 Score=158.87 Aligned_cols=211 Identities=21% Similarity=0.316 Sum_probs=145.4
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHh
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~ 381 (678)
.|.++.+..+.+....+.....++++.|++|||||++|++|+... +.||+.+||..+.+. ..-..+|..
T Consensus 141 ig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~--------~~~~~lfg~ 212 (469)
T PRK10923 141 IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD--------LIESELFGH 212 (469)
T ss_pred eecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH--------HHHHHhcCC
Confidence 345555555555556666677899999999999999999999987 469999999987421 111112211
Q ss_pred -----------hchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeE
Q 005762 382 -----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSI 449 (678)
Q Consensus 382 -----------a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i 449 (678)
..+.+..+.+|.||||||+.|... +|..|+++|+ +....+.+. ..
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~--------~~- 269 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD--------------VQTRLLRVLADGQFYRVGGY--------AP- 269 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH--------------HHHHHHHHHhcCcEEeCCCC--------Ce-
Confidence 122345667899999999999987 9999999998 433332111 01
Q ss_pred EEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc-eE
Q 005762 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP-IL 528 (678)
Q Consensus 450 ~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~-~i 528 (678)
...++.+|++++. ++.+.+.+ ..|.++|+.||. ..
T Consensus 270 --~~~~~rii~~~~~-~l~~~~~~-----------------------------------------~~~~~~L~~~l~~~~ 305 (469)
T PRK10923 270 --VKVDVRIIAATHQ-NLEQRVQE-----------------------------------------GKFREDLFHRLNVIR 305 (469)
T ss_pred --EEeeEEEEEeCCC-CHHHHHHc-----------------------------------------CCchHHHHHHhccee
Confidence 1235667776653 33333321 227788889985 47
Q ss_pred EecCCcCH--HHHHHHHhchHHHHHHHHHHHHhcCCce-eeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 529 VSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVK-LHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 529 v~f~~Lse--eeL~~Il~~~ln~L~~q~~~~~~~~gv~-l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
|.++||.+ +|+..++.. ++.++...+ +.. ..+++++++.|..+.| ..+.|+|+++|++++..
T Consensus 306 i~~PpLreR~~Di~~l~~~----~l~~~~~~~---~~~~~~~~~~a~~~L~~~~w--pgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 306 VHLPPLRERREDIPRLARH----FLQVAAREL---GVEAKLLHPETEAALTRLAW--PGNVRQLENTCRWLTVM 370 (469)
T ss_pred ecCCCcccchhhHHHHHHH----HHHHHHHHc---CCCCCCcCHHHHHHHHhCCC--CChHHHHHHHHHHHHHh
Confidence 88999986 677777765 444444422 323 3599999999999887 77789999999998754
No 87
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.55 E-value=3.1e-14 Score=148.41 Aligned_cols=179 Identities=26% Similarity=0.380 Sum_probs=115.3
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.+++ ++||+.++..|..++..+ --.|+|||||||||||+.|+++|+.+
T Consensus 34 t~de-~~gQe~vV~~L~~a~~~~-------------------------------~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 34 TFDE-LAGQEHVVQVLKNALLRR-------------------------------ILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred cHHh-hcchHHHHHHHHHHHhhc-------------------------------CCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 3444 799999999999988521 12689999999999999999999999
Q ss_pred CC------CEEEEeccccccccccccchHHHHHHHHHhhchh--HhhhcCcEEEEcCccchhhhhccccccCCCchhHHH
Q 005762 350 NV------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFN--VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (678)
Q Consensus 350 ~~------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~--v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq 421 (678)
+. .+.+.++++...-..+.+. -+.+.++....... ......-||+|||.|.|+.+ .|
T Consensus 82 ~~~~~~~~rvl~lnaSderGisvvr~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq 146 (346)
T KOG0989|consen 82 NCEQLFPCRVLELNASDERGISVVREK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQ 146 (346)
T ss_pred cCccccccchhhhcccccccccchhhh-hcCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HH
Confidence 65 2344455543321111111 11111211111000 01122369999999999887 99
Q ss_pred HHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHH
Q 005762 422 QALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTS 501 (678)
Q Consensus 422 ~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~ 501 (678)
.+|++.||.... ++.++||| |.. +
T Consensus 147 ~aLrr~mE~~s~-------------------~trFiLIc--nyl--s--------------------------------- 170 (346)
T KOG0989|consen 147 AALRRTMEDFSR-------------------TTRFILIC--NYL--S--------------------------------- 170 (346)
T ss_pred HHHHHHHhcccc-------------------ceEEEEEc--CCh--h---------------------------------
Confidence 999999994211 12234444 321 1
Q ss_pred HHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 005762 502 SLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (678)
Q Consensus 502 ~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a 579 (678)
.+++.+.+|... +.|.+|..+++++.|+. + ...++ +.+++++++.|++.+
T Consensus 171 --------------rii~pi~SRC~K-frFk~L~d~~iv~rL~~----I-------a~~E~--v~~d~~al~~I~~~S 220 (346)
T KOG0989|consen 171 --------------RIIRPLVSRCQK-FRFKKLKDEDIVDRLEK----I-------ASKEG--VDIDDDALKLIAKIS 220 (346)
T ss_pred --------------hCChHHHhhHHH-hcCCCcchHHHHHHHHH----H-------HHHhC--CCCCHHHHHHHHHHc
Confidence 155667777766 58999999998887763 1 22234 559999999999986
No 88
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.1e-14 Score=146.72 Aligned_cols=129 Identities=27% Similarity=0.368 Sum_probs=100.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|-|..+.++.|++.|..... +..+...+|- -++.++||+||||||||++||++|+..+.-|
T Consensus 178 dvggckeqieklrevve~pll---~perfv~lgi---------------dppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLL---HPERFVNLGI---------------DPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhcccc---CHHHHhhcCC---------------CCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 378999999999998863311 1111111121 2468999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
+.+-.++|.+ .|+|+. ...++++|+.+... +.||||+||||.+...+-..+.+.| .++|..+|+++.
T Consensus 240 irvigselvq-kyvgeg-armvrelf~martk----kaciiffdeidaiggarfddg~ggd---nevqrtmleli~ 306 (435)
T KOG0729|consen 240 IRVIGSELVQ-KYVGEG-ARMVRELFEMARTK----KACIIFFDEIDAIGGARFDDGAGGD---NEVQRTMLELIN 306 (435)
T ss_pred EeehhHHHHH-HHhhhh-HHHHHHHHHHhccc----ceEEEEeeccccccCccccCCCCCc---HHHHHHHHHHHH
Confidence 9999999995 699998 78899999988764 6689999999999887655444444 358888888774
No 89
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=3.3e-14 Score=169.85 Aligned_cols=191 Identities=19% Similarity=0.307 Sum_probs=134.1
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.|+. ||||++.++.+.+.+.++ .+.|+||+||||||||++|+.+|+.+
T Consensus 185 ~ld~-~iGr~~ei~~~i~~l~r~-------------------------------~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 185 KIDP-VLGRDDEIRQMIDILLRR-------------------------------RQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCCc-ccCCHHHHHHHHHHHhcC-------------------------------CcCceeEECCCCCCHHHHHHHHHHHH
Confidence 4554 899999988887766421 24799999999999999999999876
Q ss_pred ----------CCCEEEEecccccc-ccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 350 ----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 350 ----------~~~fv~id~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
+..++.++.+.+.. ..|.|+- +..+..++..... ...+.||||||||.+...+.+ . .+.
T Consensus 233 ~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~---~~~~~ILfIDEih~l~~~g~~-~-----~~~ 302 (852)
T TIGR03345 233 AAGDVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKA---SPQPIILFIDEAHTLIGAGGQ-A-----GQG 302 (852)
T ss_pred hhCCCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHh---cCCCeEEEEeChHHhccCCCc-c-----ccc
Confidence 24588888887662 3566665 6778888876532 125679999999999875321 1 122
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
++-+.|+.+|+. ..+.+|.+++..+..+.+
T Consensus 303 d~~n~Lkp~l~~-----------------------G~l~~IgaTT~~e~~~~~--------------------------- 332 (852)
T TIGR03345 303 DAANLLKPALAR-----------------------GELRTIAATTWAEYKKYF--------------------------- 332 (852)
T ss_pred cHHHHhhHHhhC-----------------------CCeEEEEecCHHHHhhhh---------------------------
Confidence 356778888872 123455555533221111
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
...|.|.+||. +|.+.+++.++..+|+.. +.+.|.. ...+.++++++..+++.
T Consensus 333 -----------------~~d~AL~rRf~-~i~v~eps~~~~~~iL~~----~~~~~e~-----~~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 333 -----------------EKDPALTRRFQ-VVKVEEPDEETAIRMLRG----LAPVLEK-----HHGVLILDEAVVAAVEL 385 (852)
T ss_pred -----------------hccHHHHHhCe-EEEeCCCCHHHHHHHHHH----HHHhhhh-----cCCCeeCHHHHHHHHHH
Confidence 16788999996 689999999999999863 4444443 23477999999998887
Q ss_pred h
Q 005762 579 A 579 (678)
Q Consensus 579 a 579 (678)
+
T Consensus 386 s 386 (852)
T TIGR03345 386 S 386 (852)
T ss_pred c
Confidence 5
No 90
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.55 E-value=1.1e-14 Score=142.66 Aligned_cols=121 Identities=26% Similarity=0.466 Sum_probs=81.6
Q ss_pred cccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHh-----------hchh
Q 005762 320 NVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ-----------AEFN 385 (678)
Q Consensus 320 ~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~-----------a~~~ 385 (678)
.++..+.+|||+|++||||+.+|++|++.. +.||+.+||+.+.+ +..-.++|-. ..+.
T Consensus 17 ~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~--------~~~e~~LFG~~~~~~~~~~~~~~G~ 88 (168)
T PF00158_consen 17 RAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE--------ELLESELFGHEKGAFTGARSDKKGL 88 (168)
T ss_dssp HHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H--------HHHHHHHHEBCSSSSTTTSSEBEHH
T ss_pred HHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc--------chhhhhhhccccccccccccccCCc
Confidence 334456899999999999999999999987 46999999998752 2222334422 2356
Q ss_pred HhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCC
Q 005762 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (678)
Q Consensus 386 v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf 464 (678)
++.+.+|+||||||+.|.+. +|..|+++|+ +....+... . .-..++.+|++++
T Consensus 89 l~~A~~GtL~Ld~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~---~~~~~~RiI~st~- 142 (168)
T PF00158_consen 89 LEQANGGTLFLDEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSD--------K---PVPVDVRIIASTS- 142 (168)
T ss_dssp HHHTTTSEEEEETGGGS-HH--------------HHHHHHHHHHHSEEECCTSS--------S---EEE--EEEEEEES-
T ss_pred eeeccceEEeecchhhhHHH--------------HHHHHHHHHhhchhcccccc--------c---cccccceEEeecC-
Confidence 77889999999999999998 9999999999 544433111 1 1223667777665
Q ss_pred cCHHHHHHhh
Q 005762 465 VDLEKTISER 474 (678)
Q Consensus 465 ~~Le~~i~~r 474 (678)
.+|++.+.++
T Consensus 143 ~~l~~~v~~g 152 (168)
T PF00158_consen 143 KDLEELVEQG 152 (168)
T ss_dssp S-HHHHHHTT
T ss_pred cCHHHHHHcC
Confidence 3566666543
No 91
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.6e-13 Score=154.22 Aligned_cols=185 Identities=24% Similarity=0.344 Sum_probs=124.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
||||+.+++.|..++... + .+.++||+||+|||||++|+.+|+.+++
T Consensus 15 liGQe~vv~~L~~a~~~~--r----------------------------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~ 64 (491)
T PRK14964 15 LVGQDVLVRILRNAFTLN--K----------------------------IPQSILLVGASGVGKTTCARIISLCLNCSNG 64 (491)
T ss_pred hcCcHHHHHHHHHHHHcC--C----------------------------CCceEEEECCCCccHHHHHHHHHHHHcCcCC
Confidence 899999999988776411 0 1257999999999999999999997642
Q ss_pred ---------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 352 ---------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 352 ---------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
.++++|+++-. |. ..++.++......-..+...|++|||+|.|+..
T Consensus 65 ~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~-----~v---ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~----- 131 (491)
T PRK14964 65 PTSDPCGTCHNCISIKNSNHPDVIEIDAASNT-----SV---DDIKVILENSCYLPISSKFKVYIIDEVHMLSNS----- 131 (491)
T ss_pred CCCCCccccHHHHHHhccCCCCEEEEecccCC-----CH---HHHHHHHHHHHhccccCCceEEEEeChHhCCHH-----
Confidence 34566664322 22 234444444333222346679999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ...++||++++ ++.+
T Consensus 132 ---------A~NaLLK~LEeP---------------------p~~v~fIlatt--e~~K--------------------- 158 (491)
T PRK14964 132 ---------AFNALLKTLEEP---------------------APHVKFILATT--EVKK--------------------- 158 (491)
T ss_pred ---------HHHHHHHHHhCC---------------------CCCeEEEEEeC--ChHH---------------------
Confidence 899999999941 11234555432 1111
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+.+.+++|+ ..+.|.+++.+++.+.+... ++..+ +.++++
T Consensus 159 --------------------------l~~tI~SRc-~~~~f~~l~~~el~~~L~~i-----------a~~Eg--i~i~~e 198 (491)
T PRK14964 159 --------------------------IPVTIISRC-QRFDLQKIPTDKLVEHLVDI-----------AKKEN--IEHDEE 198 (491)
T ss_pred --------------------------HHHHHHHhh-eeeecccccHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 112233344 25799999999998887641 11223 459999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
+++.|++.+ +.+.|.+.+.++.++.
T Consensus 199 AL~lIa~~s---~GslR~alslLdqli~ 223 (491)
T PRK14964 199 SLKLIAENS---SGSMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999986 5678888888887663
No 92
>PRK15115 response regulator GlrR; Provisional
Probab=99.55 E-value=1.4e-13 Score=153.20 Aligned_cols=210 Identities=20% Similarity=0.316 Sum_probs=144.1
Q ss_pred CCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHh-
Q 005762 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ- 381 (678)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~- 381 (678)
+.++.+....+....+.....+++|+|++|||||++|+.+++.. +.+|+.+||..+.+. ..-..+|..
T Consensus 138 g~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~--------~~~~~lfg~~ 209 (444)
T PRK15115 138 TRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ--------LLESELFGHA 209 (444)
T ss_pred ccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH--------HHHHHhcCCC
Confidence 45556666666666666667889999999999999999999987 469999999987521 111112211
Q ss_pred ----------hchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEE
Q 005762 382 ----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQ 450 (678)
Q Consensus 382 ----------a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~ 450 (678)
..+.+..+.+++|||||||.|... +|..|+++|+ +....+ |...
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~---g~~~-------- 264 (444)
T PRK15115 210 RGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP--------------LQVKLLRVLQERKVRPL---GSNR-------- 264 (444)
T ss_pred cCCCCCCccCCCCcEEECCCCEEEEEccccCCHH--------------HHHHHHHHHhhCCEEeC---CCCc--------
Confidence 122345567899999999999987 9999999998 433322 1110
Q ss_pred EecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EE
Q 005762 451 MDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LV 529 (678)
Q Consensus 451 idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv 529 (678)
....++.+|++++. ++++.+.+. .|.++|..|+.. .|
T Consensus 265 ~~~~~~rii~~~~~-~l~~~~~~~-----------------------------------------~f~~~l~~~l~~~~i 302 (444)
T PRK15115 265 DIDIDVRIISATHR-DLPKAMARG-----------------------------------------EFREDLYYRLNVVSL 302 (444)
T ss_pred eeeeeEEEEEeCCC-CHHHHHHcC-----------------------------------------CccHHHHHhhceeee
Confidence 11235677776653 355444322 266777777775 68
Q ss_pred ecCCcCH--HHHHHHHhchHHHHHHHHHHHHhcCCce-eeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 530 SLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVK-LHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 530 ~f~~Lse--eeL~~Il~~~ln~L~~q~~~~~~~~gv~-l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
.++||.+ +|+..++.. ++.++...+ +.. ..+++++++.|..+.| ..+.|+|+++|++++..
T Consensus 303 ~lPpLr~R~eDi~~l~~~----~l~~~~~~~---~~~~~~~~~~a~~~L~~~~W--pgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 303 KIPALAERTEDIPLLANH----LLRQAAERH---KPFVRAFSTDAMKRLMTASW--PGNVRQLVNVIEQCVAL 366 (444)
T ss_pred cCCChHhccccHHHHHHH----HHHHHHHHh---CCCCCCcCHHHHHHHHhCCC--CChHHHHHHHHHHHHHh
Confidence 8888886 677777765 344443322 222 3599999999999877 77889999999998753
No 93
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.55 E-value=1.9e-14 Score=131.97 Aligned_cols=95 Identities=33% Similarity=0.586 Sum_probs=74.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAE 407 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~ 407 (678)
|||+||||||||++|+.+|+.++.+|+.+++.++. ..+.+.. ...+...|..+... ..++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~-~~~i~~~~~~~~~~---~~~~vl~iDe~d~l~~~~- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDS-EQKIRDFFKKAKKS---AKPCVLFIDEIDKLFPKS- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHH-HHHHHHHHHHHHHT---STSEEEEEETGGGTSHHC-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-ccccccc-cccccccccccccc---ccceeeeeccchhccccc-
Confidence 69999999999999999999999999999999988 3355555 67777888775432 137999999999999874
Q ss_pred cccccCCCchhHHHHHHHHHHhc
Q 005762 408 SLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 408 ~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
..........+++.|+..|+.
T Consensus 75 --~~~~~~~~~~~~~~L~~~l~~ 95 (132)
T PF00004_consen 75 --QPSSSSFEQRLLNQLLSLLDN 95 (132)
T ss_dssp --STSSSHHHHHHHHHHHHHHHT
T ss_pred --ccccccccccccceeeecccc
Confidence 112333345688999999984
No 94
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.2e-14 Score=152.08 Aligned_cols=156 Identities=24% Similarity=0.345 Sum_probs=120.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---------CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCc--E
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQG--M 393 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---------~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~g--I 393 (678)
.+-+||+||||||||+|++++|+.+ ...++++++..+. +.|++++ ++.+.++|++....++. +++ .
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv~d-~~~lVf 253 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELVED-RGNLVF 253 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHHhC-CCcEEE
Confidence 5679999999999999999999988 3478899999988 6799999 99999999987765544 343 5
Q ss_pred EEEcCccchhhhhccccccCCCch-hHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHH
Q 005762 394 VYIDEVDKITKKAESLNISRDVSG-EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTIS 472 (678)
Q Consensus 394 LfIDEIDkl~~~~~~~~~~~d~s~-~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~ 472 (678)
|+|||++.+...|.+...++..+. .++.++||..||.-. ...|+++.+|+|.. +.
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-------------------~~~NvliL~TSNl~---~s-- 309 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-------------------RYPNVLILATSNLT---DS-- 309 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-------------------cCCCEEEEeccchH---HH--
Confidence 689999999998866555555444 589999999999311 23466666666622 11
Q ss_pred hhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHH
Q 005762 473 ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALG 551 (678)
Q Consensus 473 ~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~ 551 (678)
+.-.|+.|-|++....+++.+.+++|++-.+..|+
T Consensus 310 --------------------------------------------iD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 310 --------------------------------------------IDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred --------------------------------------------HHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 33468889999999999999999999886544444
No 95
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.54 E-value=4.7e-15 Score=148.81 Aligned_cols=184 Identities=20% Similarity=0.288 Sum_probs=80.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC-C
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV-P 352 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~-~ 352 (678)
.|+||+.+|++|..+... ..|+||+||||||||++|+.++.++-- .
T Consensus 4 dI~GQe~aKrAL~iAAaG---------------------------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~ 50 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAG---------------------------------GHHLLLIGPPGTGKTMLARRLPSLLPPLT 50 (206)
T ss_dssp CSSSTHHHHHHHHHHHHC---------------------------------C--EEEES-CCCTHHHHHHHHHHCS--CC
T ss_pred hhcCcHHHHHHHHHHHcC---------------------------------CCCeEEECCCCCCHHHHHHHHHHhCCCCc
Confidence 389999999999887741 369999999999999999999988721 0
Q ss_pred EE-EEeccccc-------------ccccc----ccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCC
Q 005762 353 FV-IADATTLT-------------QAGYV----GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRD 414 (678)
Q Consensus 353 fv-~id~s~l~-------------~sgyv----G~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d 414 (678)
.. .+..+.+. ..-|+ ..+....+..-..-.++.+..+++|||||||+-.+.+.
T Consensus 51 ~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~--------- 121 (206)
T PF01078_consen 51 EEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS--------- 121 (206)
T ss_dssp EECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH---------
T ss_pred hHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH---------
Confidence 00 00000000 00000 00101111111122456788899999999999998877
Q ss_pred CchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCC
Q 005762 415 VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGV 494 (678)
Q Consensus 415 ~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~ 494 (678)
+++.|++.||...+.|...+.....+.+++.+.+.|..= +|++.+-.+. + .
T Consensus 122 -----vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcp--CG~~~~~~~~----C------------------~ 172 (206)
T PF01078_consen 122 -----VLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCP--CGYYGDPDNR----C------------------R 172 (206)
T ss_dssp -----HHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S--------------------------------------
T ss_pred -----HHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccc--cccccccccc----c------------------c
Confidence 999999999966666655554444444455555555410 2333211000 0 0
Q ss_pred CchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHH
Q 005762 495 TDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQ 538 (678)
Q Consensus 495 ~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Lseee 538 (678)
.+......++++ +.-+|++|||+.+.+++++.+|
T Consensus 173 Cs~~~~~~Y~~r----------lsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 173 CSPRQIRRYQSR----------LSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp --------------------------------------------
T ss_pred cccccccccccc----------ccccccccccccccccccccCC
Confidence 111222233333 7779999999999998887654
No 96
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.1e-13 Score=154.11 Aligned_cols=185 Identities=30% Similarity=0.392 Sum_probs=125.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
++||+.+++.|..++.+. + ...++||+||+|||||++|+++|+.+++.
T Consensus 23 liGq~~vv~~L~~ai~~~--r----------------------------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~ 72 (507)
T PRK06645 23 LQGQEVLVKVLSYTILND--R----------------------------LAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 72 (507)
T ss_pred hcCcHHHHHHHHHHHHcC--C----------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCccc
Confidence 899999999998877421 0 13579999999999999999999998652
Q ss_pred --------------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhh
Q 005762 353 --------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (678)
Q Consensus 353 --------------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~ 406 (678)
++++|+.+ ..| ...++.++..+...-..+...||||||+|.++..
T Consensus 73 ~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas-----~~~---vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~- 143 (507)
T PRK06645 73 ITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS-----KTS---VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG- 143 (507)
T ss_pred cccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC-----CCC---HHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH-
Confidence 22233221 111 2345555555443322345679999999999775
Q ss_pred ccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccc
Q 005762 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (678)
Q Consensus 407 ~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~ 486 (678)
.+++||+.||.- ..+++||++++. ..+
T Consensus 144 -------------a~naLLk~LEep---------------------p~~~vfI~aTte--~~k----------------- 170 (507)
T PRK06645 144 -------------AFNALLKTLEEP---------------------PPHIIFIFATTE--VQK----------------- 170 (507)
T ss_pred -------------HHHHHHHHHhhc---------------------CCCEEEEEEeCC--hHH-----------------
Confidence 899999999831 123355554431 111
Q ss_pred ccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceee
Q 005762 487 RANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLH 566 (678)
Q Consensus 487 ~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~ 566 (678)
+.+.+.+|+ ..+.|.+++.+++.+++... ++..+ +.
T Consensus 171 ------------------------------I~~tI~SRc-~~~ef~~ls~~el~~~L~~i-----------~~~eg--i~ 206 (507)
T PRK06645 171 ------------------------------IPATIISRC-QRYDLRRLSFEEIFKLLEYI-----------TKQEN--LK 206 (507)
T ss_pred ------------------------------hhHHHHhcc-eEEEccCCCHHHHHHHHHHH-----------HHHcC--CC
Confidence 233455566 36889999999999988742 11223 55
Q ss_pred eCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 567 FTEKALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 567 ~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
++++++++|++.+ +.+.|.+-+.++.++.
T Consensus 207 ie~eAL~~Ia~~s---~GslR~al~~Ldkai~ 235 (507)
T PRK06645 207 TDIEALRIIAYKS---EGSARDAVSILDQAAS 235 (507)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 8999999999975 5678888888887653
No 97
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.54 E-value=8.8e-14 Score=154.78 Aligned_cols=219 Identities=19% Similarity=0.326 Sum_probs=144.3
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHH
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYK 377 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~ 377 (678)
.+.++.+..+......+.....+++|+|++||||+++|++++... ..||+.++|..+.+. .++|.. ...+..
T Consensus 142 ig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~-~~~~~~ 220 (445)
T TIGR02915 142 ITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYE-KGAFTG 220 (445)
T ss_pred eecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCC-CCCcCC
Confidence 344555666665555555667899999999999999999999887 469999999987521 111111 000000
Q ss_pred HHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce-eecCCCCcccCCCCCeEEEecCcc
Q 005762 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSIQMDTKDI 456 (678)
Q Consensus 378 l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~-v~v~~~g~~~~~~~~~i~idtsNi 456 (678)
......+.+..+.+|+||||||+.|... +|..|+++|+... ..+... . ....++
T Consensus 221 ~~~~~~g~~~~a~~gtl~l~~i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~---~--------~~~~~~ 275 (445)
T TIGR02915 221 AVKQTLGKIEYAHGGTLFLDEIGDLPLN--------------LQAKLLRFLQERVIERLGGR---E--------EIPVDV 275 (445)
T ss_pred CccCCCCceeECCCCEEEEechhhCCHH--------------HHHHHHHHHhhCeEEeCCCC---c--------eeeece
Confidence 0111233355678899999999999987 9999999998433 222111 0 112355
Q ss_pred eEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcC
Q 005762 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALT 535 (678)
Q Consensus 457 lfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Ls 535 (678)
.+|++++. ++++.+.+ ..|.++|..|+.. .|.++||.
T Consensus 276 rii~~~~~-~l~~~~~~-----------------------------------------~~~~~~L~~~l~~~~i~lPpLr 313 (445)
T TIGR02915 276 RIVCATNQ-DLKRMIAE-----------------------------------------GTFREDLFYRIAEISITIPPLR 313 (445)
T ss_pred EEEEecCC-CHHHHHHc-----------------------------------------CCccHHHHHHhccceecCCCch
Confidence 66776653 34333322 2277777778765 68899998
Q ss_pred H--HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 536 E--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 536 e--eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
+ +|+..++.. ++.+|...+. .....+++++++.|..+.| ..+.|+|+++|++++..
T Consensus 314 ~R~~Di~~l~~~----~l~~~~~~~~--~~~~~~~~~a~~~L~~~~w--pgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 314 SRDGDAVLLANA----FLERFARELK--RKTKGFTDDALRALEAHAW--PGNVRELENKVKRAVIM 371 (445)
T ss_pred hchhhHHHHHHH----HHHHHHHHhC--CCCCCCCHHHHHHHHhCCC--CChHHHHHHHHHHHHHh
Confidence 6 677777664 4444544321 1235699999999999887 77789999999998753
No 98
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=157.79 Aligned_cols=184 Identities=23% Similarity=0.322 Sum_probs=123.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCc-EEEEcCCCcHHHHHHHHHHHHhCCC-
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSN-VLLMGPTGSGKTLLAKTLARHVNVP- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~-iLL~GPpGtGKT~LAralA~~l~~~- 352 (678)
|+||+.+++.|..++... ...| +||+||+|||||++|+++|+.+++.
T Consensus 15 ivGq~~i~~~L~~~i~~~-------------------------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 63 (584)
T PRK14952 15 VVGQEHVTEPLSSALDAG-------------------------------RINHAYLFSGPRGCGKTSSARILARSLNCAQ 63 (584)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 899999999998887511 0134 7999999999999999999988642
Q ss_pred -------------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhc
Q 005762 353 -------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAE 407 (678)
Q Consensus 353 -------------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~ 407 (678)
++.+|++.. .|. ..++++.......-..+...|+||||+|.|+..
T Consensus 64 ~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~-----~gv---d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-- 133 (584)
T PRK14952 64 GPTATPCGVCESCVALAPNGPGSIDVVELDAASH-----GGV---DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-- 133 (584)
T ss_pred CCCCCcccccHHHHHhhcccCCCceEEEeccccc-----cCH---HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH--
Confidence 233333221 122 233333333222212245679999999999876
Q ss_pred cccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccc
Q 005762 408 SLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVR 487 (678)
Q Consensus 408 ~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~ 487 (678)
.+++||+.||. ...+++||++++.. .
T Consensus 134 ------------A~NALLK~LEE---------------------pp~~~~fIL~tte~--~------------------- 159 (584)
T PRK14952 134 ------------GFNALLKIVEE---------------------PPEHLIFIFATTEP--E------------------- 159 (584)
T ss_pred ------------HHHHHHHHHhc---------------------CCCCeEEEEEeCCh--H-------------------
Confidence 99999999993 12244666644311 1
Q ss_pred cccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeee
Q 005762 488 ANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHF 567 (678)
Q Consensus 488 ~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~ 567 (678)
.+.+.+++|. ..+.|.+++.+++.+.+... +...+ +.+
T Consensus 160 ----------------------------kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i-----------~~~eg--i~i 197 (584)
T PRK14952 160 ----------------------------KVLPTIRSRT-HHYPFRLLPPRTMRALIARI-----------CEQEG--VVV 197 (584)
T ss_pred ----------------------------hhHHHHHHhc-eEEEeeCCCHHHHHHHHHHH-----------HHHcC--CCC
Confidence 1334455563 36899999999988877631 22224 458
Q ss_pred CHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 568 TEKALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 568 t~eal~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
+++++.+|++.+ +.+.|.+.++++.++.
T Consensus 198 ~~~al~~Ia~~s---~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 198 DDAVYPLVIRAG---GGSPRDTLSVLDQLLA 225 (584)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 999999999985 5668888888888653
No 99
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-14 Score=159.03 Aligned_cols=201 Identities=28% Similarity=0.369 Sum_probs=144.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC-CEEEEeccccccccccccchHHHHHHHHHhhchhHhhh----cCcEEEEcCcc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV-PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAA----QQGMVYIDEVD 400 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~-~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a----~~gILfIDEID 400 (678)
.++||+||||||||++||.|.+.|+. +--.++.-++. ..|||++ +..++++|..++...... .=.||++||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 78999999999999999999999975 44567887777 5799999 899999999887654432 12399999999
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCC
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~i 480 (678)
.+++.|++...+..+.. .+.++||.-|||.. ...||++|-.+|..||-+.
T Consensus 335 AICKqRGS~~g~TGVhD-~VVNQLLsKmDGVe-------------------qLNNILVIGMTNR~DlIDE---------- 384 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHD-TVVNQLLSKMDGVE-------------------QLNNILVIGMTNRKDLIDE---------- 384 (744)
T ss_pred HHHHhcCCCCCCCCccH-HHHHHHHHhcccHH-------------------hhhcEEEEeccCchhhHHH----------
Confidence 99999887665444443 48999999999732 2357888877775443111
Q ss_pred CcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhc
Q 005762 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (678)
Q Consensus 481 gF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~ 560 (678)
.| ++| +||.+.+++.-+++.-..+|++..-. .++.
T Consensus 385 ------------------------------AL----LRP---GRlEVqmEIsLPDE~gRlQIl~IHT~--------rMre 419 (744)
T KOG0741|consen 385 ------------------------------AL----LRP---GRLEVQMEISLPDEKGRLQILKIHTK--------RMRE 419 (744)
T ss_pred ------------------------------Hh----cCC---CceEEEEEEeCCCccCceEEEEhhhh--------hhhh
Confidence 11 445 79999899999999988888885321 1222
Q ss_pred CCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 005762 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 607 (678)
Q Consensus 561 ~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~ 607 (678)
++ .-=++--++.||... +++..-+|..++.....-||......
T Consensus 420 ~~--~l~~dVdl~elA~lT--KNfSGAEleglVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 420 NN--KLSADVDLKELAALT--KNFSGAELEGLVKSAQSFAMNRHVKA 462 (744)
T ss_pred cC--CCCCCcCHHHHHHHh--cCCchhHHHHHHHHHHHHHHHhhhcc
Confidence 21 111222356677653 56766689999999888888876544
No 100
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.8e-13 Score=154.14 Aligned_cols=184 Identities=25% Similarity=0.343 Sum_probs=122.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
||||+.+++.|..++... + ....+||+||+|||||++|+.+|+.+++
T Consensus 18 iiGq~~~v~~L~~~i~~~--r----------------------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~ 67 (546)
T PRK14957 18 VAGQQHALNSLVHALETQ--K----------------------------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 (546)
T ss_pred hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 899999999988777411 0 0234899999999999999999998864
Q ss_pred ---------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 352 ---------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 352 ---------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
.++.+++.. ..|.+ .++.++......-..+...||||||+|++...
T Consensus 68 ~~~~pCg~C~sC~~i~~~~~~dlieidaas-----~~gvd---~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~----- 134 (546)
T PRK14957 68 VTAEPCNKCENCVAINNNSFIDLIEIDAAS-----RTGVE---ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ----- 134 (546)
T ss_pred CCCCCCcccHHHHHHhcCCCCceEEeeccc-----ccCHH---HHHHHHHHHHhhhhcCCcEEEEEechhhccHH-----
Confidence 233333321 12222 23333333222222245579999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.++.||+.||.- ..+++||++++ +..
T Consensus 135 ---------a~naLLK~LEep---------------------p~~v~fIL~Tt--d~~---------------------- 160 (546)
T PRK14957 135 ---------SFNALLKTLEEP---------------------PEYVKFILATT--DYH---------------------- 160 (546)
T ss_pred ---------HHHHHHHHHhcC---------------------CCCceEEEEEC--Chh----------------------
Confidence 999999999941 11234554332 111
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+++|. .++.|.+++.+++.+.+... . ...+ +.++++
T Consensus 161 -------------------------kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~i----l-------~~eg--i~~e~~ 201 (546)
T PRK14957 161 -------------------------KIPVTILSRC-IQLHLKHISQADIKDQLKII----L-------AKEN--INSDEQ 201 (546)
T ss_pred -------------------------hhhhhHHHhe-eeEEeCCCCHHHHHHHHHHH----H-------HHcC--CCCCHH
Confidence 1333455566 46899999999998887641 1 1224 568999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+++.|++.+ +.+.|.+-+.++.++
T Consensus 202 Al~~Ia~~s---~GdlR~alnlLek~i 225 (546)
T PRK14957 202 SLEYIAYHA---KGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999986 566888888888766
No 101
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.5e-15 Score=152.61 Aligned_cols=128 Identities=28% Similarity=0.435 Sum_probs=100.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
+-|.+..++.|.++|... +.|+......| ..++.+|+|||+||||||+||+++|+.....|+
T Consensus 187 iGGle~QiQEiKEsvELP---LthPE~YeemG---------------ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELP---LTHPEYYEEMG---------------IKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred cccHHHHHHHHHHhhcCC---CCCHHHHHHcC---------------CCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 789999999999998621 11111100111 124689999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
++-.++|.+ .|.|+. .+.++++|+.+..+ .++|+||||||.+..++-..+.+.. +++|..+|++|.
T Consensus 249 RvvGseLiQ-kylGdG-pklvRqlF~vA~e~----apSIvFiDEIdAiGtKRyds~Sgge---rEiQrtmLELLN 314 (440)
T KOG0726|consen 249 RVVGSELIQ-KYLGDG-PKLVRELFRVAEEH----APSIVFIDEIDAIGTKRYDSNSGGE---REIQRTMLELLN 314 (440)
T ss_pred hhhhHHHHH-HHhccc-hHHHHHHHHHHHhc----CCceEEeehhhhhccccccCCCccH---HHHHHHHHHHHH
Confidence 999999995 599998 78999999988765 8899999999999988765443332 468888888875
No 102
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.6e-13 Score=148.04 Aligned_cols=184 Identities=26% Similarity=0.356 Sum_probs=119.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
|+||+.+++.|..++... + .+..+||+||+|||||++|+++|+.+++.
T Consensus 18 iiGq~~~~~~l~~~~~~~--~----------------------------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~ 67 (363)
T PRK14961 18 IIGQKHIVTAISNGLSLG--R----------------------------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNG 67 (363)
T ss_pred ccChHHHHHHHHHHHHcC--C----------------------------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCC
Confidence 899999999988777411 0 02347999999999999999999998642
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
++.+++++- .. ...++.++......-......||||||+|++...
T Consensus 68 ~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~-------~~-v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~----- 134 (363)
T PRK14961 68 ITSNPCRKCIICKEIEKGLCLDLIEIDAASR-------TK-VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH----- 134 (363)
T ss_pred CCCCCCCCCHHHHHHhcCCCCceEEeccccc-------CC-HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH-----
Confidence 222222110 11 2234444433221111234469999999999775
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.. ..++.||++++. +++
T Consensus 135 ---------a~naLLk~lEe~---------------------~~~~~fIl~t~~--~~~--------------------- 161 (363)
T PRK14961 135 ---------SFNALLKTLEEP---------------------PQHIKFILATTD--VEK--------------------- 161 (363)
T ss_pred ---------HHHHHHHHHhcC---------------------CCCeEEEEEcCC--hHh---------------------
Confidence 889999999831 113345554431 111
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+.+.+.+|+ ..+.|.+++.+++.+++... ++..+ +.++++
T Consensus 162 --------------------------l~~tI~SRc-~~~~~~~l~~~el~~~L~~~-----------~~~~g--~~i~~~ 201 (363)
T PRK14961 162 --------------------------IPKTILSRC-LQFKLKIISEEKIFNFLKYI-----------LIKES--IDTDEY 201 (363)
T ss_pred --------------------------hhHHHHhhc-eEEeCCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 334455666 46899999999999887741 11223 558999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+++.|++.+ +.+.|.+.+.++..+
T Consensus 202 al~~ia~~s---~G~~R~al~~l~~~~ 225 (363)
T PRK14961 202 ALKLIAYHA---HGSMRDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999985 556788777777654
No 103
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.2e-13 Score=157.12 Aligned_cols=185 Identities=25% Similarity=0.376 Sum_probs=124.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
||||+.+++.|..++... + ....+||+||+|||||++|+++|+.+++.
T Consensus 18 IIGQe~vv~~L~~ai~~~--r----------------------------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~ 67 (709)
T PRK08691 18 LVGQEHVVKALQNALDEG--R----------------------------LHHAYLLTGTRGVGKTTIARILAKSLNCENA 67 (709)
T ss_pred HcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCcHHHHHHHHHHHhcccCC
Confidence 899999999998887521 0 12568999999999999999999998642
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
++.+|..+- .| ...+++++......-......||||||+|+|...
T Consensus 68 ~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~-----~g---Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~----- 134 (709)
T PRK08691 68 QHGEPCGVCQSCTQIDAGRYVDLLEIDAASN-----TG---IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS----- 134 (709)
T ss_pred CCCCCCcccHHHHHHhccCccceEEEecccc-----CC---HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH-----
Confidence 122222211 11 2345555544332222235579999999998765
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.++.||+.||.. ..++.||++++.. .
T Consensus 135 ---------A~NALLKtLEEP---------------------p~~v~fILaTtd~--~---------------------- 160 (709)
T PRK08691 135 ---------AFNAMLKTLEEP---------------------PEHVKFILATTDP--H---------------------- 160 (709)
T ss_pred ---------HHHHHHHHHHhC---------------------CCCcEEEEEeCCc--c----------------------
Confidence 899999999831 1233555544311 0
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+++|+ ..+.|.+++.+++.+.|.. .+...+ +.++++
T Consensus 161 -------------------------kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~-----------Il~kEg--i~id~e 201 (709)
T PRK08691 161 -------------------------KVPVTVLSRC-LQFVLRNMTAQQVADHLAH-----------VLDSEK--IAYEPP 201 (709)
T ss_pred -------------------------ccchHHHHHH-hhhhcCCCCHHHHHHHHHH-----------HHHHcC--CCcCHH
Confidence 1333445555 3468899999999888774 122234 558999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
+++.|++.+ ..+.|.+.++++.++.
T Consensus 202 AL~~Ia~~A---~GslRdAlnLLDqaia 226 (709)
T PRK08691 202 ALQLLGRAA---AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 999999986 6778888888887664
No 104
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.52 E-value=2.1e-13 Score=161.42 Aligned_cols=217 Identities=26% Similarity=0.361 Sum_probs=141.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|.|++.+++.|.+.+....+ +.......|. .++.++||+||||||||++|++||+.++.+|+
T Consensus 180 i~G~~~~~~~l~~~i~~~~~---~~~~~~~~gi---------------~~~~giLL~GppGtGKT~laraia~~~~~~~i 241 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMK---HPELFEHLGI---------------EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFI 241 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhh---CHHHHHhcCC---------------CCCceEEEECCCCCChHHHHHHHHHHhCCeEE
Confidence 79999999999998863321 1111000111 13478999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+++.++. ..|.|.. +..+..+|..+.. ..++||||||||.+...+.... ......+++.|+.+|++..
T Consensus 242 ~i~~~~i~-~~~~g~~-~~~l~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~-- 310 (733)
T TIGR01243 242 SINGPEIM-SKYYGES-EERLREIFKEAEE----NAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLK-- 310 (733)
T ss_pred EEecHHHh-cccccHH-HHHHHHHHHHHHh----cCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccc--
Confidence 99999887 4577776 6678888877643 3678999999999987643321 1122458889999998521
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
....+++|+++|..+
T Consensus 311 -----------------~~~~vivI~atn~~~------------------------------------------------ 325 (733)
T TIGR01243 311 -----------------GRGRVIVIGATNRPD------------------------------------------------ 325 (733)
T ss_pred -----------------cCCCEEEEeecCChh------------------------------------------------
Confidence 112345554444211
Q ss_pred hcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHH
Q 005762 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (678)
Q Consensus 515 ~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~i 592 (678)
.+.|.+. +||+..+.+..++.++..+|+... . .+..+ ..+..+..|++.. .++-...|..+
T Consensus 326 -~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~----~---------~~~~l-~~d~~l~~la~~t--~G~~gadl~~l 388 (733)
T TIGR01243 326 -ALDPALRRPGRFDREIVIRVPDKRARKEILKVH----T---------RNMPL-AEDVDLDKLAEVT--HGFVGADLAAL 388 (733)
T ss_pred -hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHH----h---------cCCCC-ccccCHHHHHHhC--CCCCHHHHHHH
Confidence 0233333 589999999999999999988731 1 11111 1223356666653 34445566666
Q ss_pred HHHHHHHHHh
Q 005762 593 LESILTEAMY 602 (678)
Q Consensus 593 IE~il~~a~~ 602 (678)
+......++.
T Consensus 389 ~~~a~~~al~ 398 (733)
T TIGR01243 389 AKEAAMAALR 398 (733)
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.6e-13 Score=155.58 Aligned_cols=183 Identities=27% Similarity=0.364 Sum_probs=119.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
||||+.+++.|..++.+. + -...+||+||+|||||++|++||+.+++.
T Consensus 18 IiGQe~v~~~L~~ai~~~--r----------------------------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~ 67 (624)
T PRK14959 18 VAGQETVKAILSRAAQEN--R----------------------------VAPAYLFSGTRGVGKTTIARIFAKALNCETA 67 (624)
T ss_pred hcCCHHHHHHHHHHHHcC--C----------------------------CCceEEEECCCCCCHHHHHHHHHHhccccCC
Confidence 799999999998877521 0 02579999999999999999999999652
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
++.++... ..+.+ .++.+.......-......||||||+|.|...
T Consensus 68 ~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-----~~~Id---~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~----- 134 (624)
T PRK14959 68 PTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-----NRGID---DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE----- 134 (624)
T ss_pred CCCCCCcccHHHHHHhcCCCCceEEEeccc-----ccCHH---HHHHHHHHHHhhhhcCCceEEEEEChHhCCHH-----
Confidence 33443321 11222 23332222211111234579999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.++.||+.||.. ..+++||++++.. .+
T Consensus 135 ---------a~naLLk~LEEP---------------------~~~~ifILaTt~~--~k--------------------- 161 (624)
T PRK14959 135 ---------AFNALLKTLEEP---------------------PARVTFVLATTEP--HK--------------------- 161 (624)
T ss_pred ---------HHHHHHHHhhcc---------------------CCCEEEEEecCCh--hh---------------------
Confidence 899999999831 1234556544311 00
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+.+.|++|+. ++.|.+|+++++.++|... +...+ +.++++
T Consensus 162 --------------------------ll~TI~SRcq-~i~F~pLs~~eL~~~L~~i-----------l~~eg--i~id~e 201 (624)
T PRK14959 162 --------------------------FPVTIVSRCQ-HFTFTRLSEAGLEAHLTKV-----------LGREG--VDYDPA 201 (624)
T ss_pred --------------------------hhHHHHhhhh-ccccCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 2223445553 5789999999999888742 11223 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESI 596 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~i 596 (678)
+++.|++.+ ..+.|.+-++++.+
T Consensus 202 al~lIA~~s---~GdlR~Al~lLeql 224 (624)
T PRK14959 202 AVRLIARRA---AGSVRDSMSLLGQV 224 (624)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHH
Confidence 999999986 55678777777754
No 106
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.1e-13 Score=157.10 Aligned_cols=187 Identities=24% Similarity=0.368 Sum_probs=121.9
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
|++ ||||+.+++.|..++... + -...+||+||+|||||++|+++|+.++
T Consensus 15 f~d-viGQe~vv~~L~~~l~~~--r----------------------------l~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 15 FSE-MVGQEHVVQALTNALTQQ--R----------------------------LHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred HHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444 789999999998887521 0 023469999999999999999999986
Q ss_pred C-----------------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccc
Q 005762 351 V-----------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (678)
Q Consensus 351 ~-----------------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 401 (678)
+ .++.+|+.+- .| ...+++++....+.-......|++|||+|.
T Consensus 64 C~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~-----~~---Vd~iReli~~~~~~p~~g~~KV~IIDEvh~ 135 (618)
T PRK14951 64 CQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASN-----RG---VDEVQQLLEQAVYKPVQGRFKVFMIDEVHM 135 (618)
T ss_pred CCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccc-----cC---HHHHHHHHHHHHhCcccCCceEEEEEChhh
Confidence 4 1233333211 12 223455554433222223456999999999
Q ss_pred hhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCC
Q 005762 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (678)
Q Consensus 402 l~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ig 481 (678)
|+.. .++.||+.||.- ..+++||++++.. .+
T Consensus 136 Ls~~--------------a~NaLLKtLEEP---------------------P~~~~fIL~Ttd~--~k------------ 166 (618)
T PRK14951 136 LTNT--------------AFNAMLKTLEEP---------------------PEYLKFVLATTDP--QK------------ 166 (618)
T ss_pred CCHH--------------HHHHHHHhcccC---------------------CCCeEEEEEECCc--hh------------
Confidence 9887 899999999831 1233455543211 00
Q ss_pred cCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcC
Q 005762 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMN 561 (678)
Q Consensus 482 F~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~ 561 (678)
+.+.+++|. .++.|.+++.+++.+.+... +...
T Consensus 167 -----------------------------------il~TIlSRc-~~~~f~~Ls~eei~~~L~~i-----------~~~e 199 (618)
T PRK14951 167 -----------------------------------VPVTVLSRC-LQFNLRPMAPETVLEHLTQV-----------LAAE 199 (618)
T ss_pred -----------------------------------hhHHHHHhc-eeeecCCCCHHHHHHHHHHH-----------HHHc
Confidence 223345555 46899999999998887742 2223
Q ss_pred CceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 562 NVKLHFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 562 gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+ +.++++++++|++.+ ..+.|.+.++++..+
T Consensus 200 g--i~ie~~AL~~La~~s---~GslR~al~lLdq~i 230 (618)
T PRK14951 200 N--VPAEPQALRLLARAA---RGSMRDALSLTDQAI 230 (618)
T ss_pred C--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 4 458999999999985 566777777766544
No 107
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.2e-13 Score=151.48 Aligned_cols=221 Identities=24% Similarity=0.320 Sum_probs=147.6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.+.|++.+|+.+.+++.-...|. +....+..+...+||.||||+|||.|+++||.+++..|
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~-------------------d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atf 214 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRP-------------------DLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATF 214 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccch-------------------HhhhccccccchhheecCCCCchHHHHHHHHhhhcceE
Confidence 48999999999999987433221 11112223457899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.++++.|+ +.|+|+. ++.++.+|.-+... +++||||||||++..++... ..+.+.+ ....+|-.+++...
T Consensus 215 f~iSassLt-sK~~Ge~-eK~vralf~vAr~~----qPsvifidEidslls~Rs~~--e~e~srr-~ktefLiq~~~~~s 285 (428)
T KOG0740|consen 215 FNISASSLT-SKYVGES-EKLVRALFKVARSL----QPSVIFIDEIDSLLSKRSDN--EHESSRR-LKTEFLLQFDGKNS 285 (428)
T ss_pred eeccHHHhh-hhccChH-HHHHHHHHHHHHhc----CCeEEEechhHHHHhhcCCc--ccccchh-hhhHHHhhhccccC
Confidence 999999999 6799999 99999999877654 88999999999999987322 2233333 44444443342111
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCc-CHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFV-DLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~-~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edL 512 (678)
... .+|++|.++|-. .+++
T Consensus 286 ---------~~~--------drvlvigaTN~P~e~De------------------------------------------- 305 (428)
T KOG0740|consen 286 ---------APD--------DRVLVIGATNRPWELDE------------------------------------------- 305 (428)
T ss_pred ---------CCC--------CeEEEEecCCCchHHHH-------------------------------------------
Confidence 111 145555555422 1222
Q ss_pred hhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHH
Q 005762 513 IAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (678)
Q Consensus 513 i~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~i 592 (678)
.++.||..++.++.++.+....++.. ++. .. .-.+++..++.|++.. .+++.-.+..+
T Consensus 306 -------a~~Rrf~kr~yiplPd~etr~~~~~~----ll~-------~~--~~~l~~~d~~~l~~~T--egysgsdi~~l 363 (428)
T KOG0740|consen 306 -------AARRRFVKRLYIPLPDYETRSLLWKQ----LLK-------EQ--PNGLSDLDISLLAKVT--EGYSGSDITAL 363 (428)
T ss_pred -------HHHHHhhceeeecCCCHHHHHHHHHH----HHH-------hC--CCCccHHHHHHHHHHh--cCcccccHHHH
Confidence 22335666677888888888888774 222 22 2337778888888875 35555566666
Q ss_pred HHHHHHHHHhcC
Q 005762 593 LESILTEAMYEI 604 (678)
Q Consensus 593 IE~il~~a~~~~ 604 (678)
+..+....+.++
T Consensus 364 ~kea~~~p~r~~ 375 (428)
T KOG0740|consen 364 CKEAAMGPLREL 375 (428)
T ss_pred HHHhhcCchhhc
Confidence 666555544444
No 108
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.50 E-value=2.5e-13 Score=151.77 Aligned_cols=219 Identities=18% Similarity=0.289 Sum_probs=143.2
Q ss_pred CCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHHH
Q 005762 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYKL 378 (678)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~l 378 (678)
+.++.+..+......+.....++++.|++||||+++|+++++.. +.||+.+||..+.+. ..+|.. ...+...
T Consensus 138 g~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~-~~~~~~~ 216 (463)
T TIGR01818 138 GEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE-KGAFTGA 216 (463)
T ss_pred ecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCC-CCCCCCc
Confidence 34444444444444455556789999999999999999999886 469999999987421 111111 0000011
Q ss_pred HHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcce
Q 005762 379 LAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDIL 457 (678)
Q Consensus 379 ~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNil 457 (678)
.....+.+..+.+++||||||+.|... +|..|+++|+ +....+... .. ...++.
T Consensus 217 ~~~~~g~~~~a~~gtl~l~ei~~l~~~--------------~q~~ll~~l~~~~~~~~~~~--------~~---~~~~~r 271 (463)
T TIGR01818 217 NTRRQGRFEQADGGTLFLDEIGDMPLD--------------AQTRLLRVLADGEFYRVGGR--------TP---IKVDVR 271 (463)
T ss_pred ccCCCCcEEECCCCeEEEEchhhCCHH--------------HHHHHHHHHhcCcEEECCCC--------ce---eeeeeE
Confidence 111123345567899999999999887 9999999998 433322111 11 122445
Q ss_pred EEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcC-
Q 005762 458 FICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALT- 535 (678)
Q Consensus 458 fI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Ls- 535 (678)
+|++++ .++++.+.. ..|.++|+.|+.. .|.++||.
T Consensus 272 ii~~~~-~~l~~~~~~-----------------------------------------~~f~~~L~~rl~~~~i~lPpLr~ 309 (463)
T TIGR01818 272 IVAATH-QNLEALVRQ-----------------------------------------GKFREDLFHRLNVIRIHLPPLRE 309 (463)
T ss_pred EEEeCC-CCHHHHHHc-----------------------------------------CCcHHHHHHHhCcceecCCCccc
Confidence 666665 234443332 2267788888875 79999999
Q ss_pred -HHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 005762 536 -EDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (678)
Q Consensus 536 -eeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a 600 (678)
.+|+..++..+ ++++...+. .....|++++++.|..+.| ..+.|+|++++++++..+
T Consensus 310 R~~Di~~l~~~~----l~~~~~~~~--~~~~~~~~~a~~~L~~~~w--pgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 310 RREDIPRLARHF----LALAARELD--VEPKLLDPEALERLKQLRW--PGNVRQLENLCRWLTVMA 367 (463)
T ss_pred chhhHHHHHHHH----HHHHHHHhC--CCCCCcCHHHHHHHHhCCC--CChHHHHHHHHHHHHHhC
Confidence 68888887754 444443221 1123599999999999877 778899999999988644
No 109
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=148.54 Aligned_cols=145 Identities=31% Similarity=0.400 Sum_probs=104.4
Q ss_pred CHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHH
Q 005762 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (678)
Q Consensus 263 ~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LA 342 (678)
....+...+.+.++|++.++..+..++. ...++||.||||||||++|
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~---------------------------------~~~~vll~G~PG~gKT~la 60 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL---------------------------------AGGHVLLEGPPGVGKTLLA 60 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH---------------------------------cCCCEEEECCCCccHHHHH
Confidence 3455677788889999999988877774 2379999999999999999
Q ss_pred HHHHHHhCCCEEEEecc-ccccccccccchHHHH---HHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 343 KTLARHVNVPFVIADAT-TLTQAGYVGEDVESIL---YKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 343 ralA~~l~~~fv~id~s-~l~~sgyvG~~~~~~l---~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
+.+|+.++.+|+.+.|+ ++..+..+|....... ...+.-..+.+-.+..+|+|+|||++..++
T Consensus 61 ~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------- 127 (329)
T COG0714 61 RALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------- 127 (329)
T ss_pred HHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH-------------
Confidence 99999999999999999 4444444554432221 111211222222222369999999999887
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCc
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKD 455 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsN 455 (678)
+|++||++|+.+.+++++... ......++++.|+|
T Consensus 128 -~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~viaT~N 162 (329)
T COG0714 128 -VQNALLEALEERQVTVPGLTT-IRLPPPFIVIATQN 162 (329)
T ss_pred -HHHHHHHHHhCcEEEECCcCC-cCCCCCCEEEEccC
Confidence 999999999998888876653 33444555555555
No 110
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.49 E-value=1.6e-13 Score=145.12 Aligned_cols=213 Identities=23% Similarity=0.387 Sum_probs=148.9
Q ss_pred CCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHHH
Q 005762 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYKL 378 (678)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~l 378 (678)
+.|..|+.+..+.+.++.-..++|+.|.+||||..+|++-+... +.||+.++|..+-+. ..+|+.++
T Consensus 208 ~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg------ 281 (511)
T COG3283 208 AVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG------ 281 (511)
T ss_pred hccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCC------
Confidence 44555666666666677778899999999999999999988777 579999999977532 22333321
Q ss_pred HHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcce
Q 005762 379 LAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDIL 457 (678)
Q Consensus 379 ~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNil 457 (678)
-....+.++.+.+|.||||||-.+++. .|..||++|. |+..+|.+. ..+.+ |+-
T Consensus 282 ~~gk~GffE~AngGTVlLDeIgEmSp~--------------lQaKLLRFL~DGtFRRVGee--------~Ev~v---dVR 336 (511)
T COG3283 282 DEGKKGFFEQANGGTVLLDEIGEMSPR--------------LQAKLLRFLNDGTFRRVGED--------HEVHV---DVR 336 (511)
T ss_pred CCCccchhhhccCCeEEeehhhhcCHH--------------HHHHHHHHhcCCceeecCCc--------ceEEE---EEE
Confidence 011234456678899999999999998 9999999997 877776433 22223 456
Q ss_pred EEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCH
Q 005762 458 FICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTE 536 (678)
Q Consensus 458 fI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Lse 536 (678)
+||++. .+|.+.+.++. |...|..|+.+ .+.++||.+
T Consensus 337 VIcatq-~nL~~lv~~g~-----------------------------------------fReDLfyRLNVLtl~~PpLRe 374 (511)
T COG3283 337 VICATQ-VNLVELVQKGK-----------------------------------------FREDLFYRLNVLTLNLPPLRE 374 (511)
T ss_pred EEeccc-ccHHHHHhcCc-----------------------------------------hHHHHHHHhheeeecCCcccc
Confidence 677554 45666665443 55556667766 577777765
Q ss_pred --HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 537 --DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 537 --eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
+|+.-+.+. ++.++...+.. ...+++++.+.+|.++.| ..+.|+|++.|-+.+..
T Consensus 375 r~~di~pL~e~----Fv~q~s~elg~--p~pkl~~~~~~~L~~y~W--pGNVRqL~N~iyRA~s~ 431 (511)
T COG3283 375 RPQDIMPLAEL----FVQQFSDELGV--PRPKLAADLLTVLTRYAW--PGNVRQLKNAIYRALTL 431 (511)
T ss_pred CcccchHHHHH----HHHHHHHHhCC--CCCccCHHHHHHHHHcCC--CccHHHHHHHHHHHHHH
Confidence 555555553 55566665543 345699999999999877 77889999988776643
No 111
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.49 E-value=5.8e-13 Score=139.08 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=99.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc-cccccc----cchHHHHHHHHH----h--------hchhH-
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT-QAGYVG----EDVESILYKLLA----Q--------AEFNV- 386 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~-~sgyvG----~~~~~~l~~l~~----~--------a~~~v- 386 (678)
..++||+||||||||++|+++|+.++.+|+.++|..-. ...++| ......+..... . ..+.+
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 46899999999999999999999999999999987422 112222 211111111100 0 01111
Q ss_pred -hhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCc
Q 005762 387 -EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (678)
Q Consensus 387 -~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~ 465 (678)
....+++|+||||+++.++ +|+.|+.+||...+.+++.+.. ..++....++.+|+|.|..
T Consensus 101 ~A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~-----~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGT-----SRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred HHHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCC-----CceEecCCCCEEEEeeCCc
Confidence 1245679999999998887 9999999999777776553221 1122233466677777743
Q ss_pred CHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhc
Q 005762 466 DLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 466 ~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
.-. . .+.+.+.|++|| ..+.+..++.++..+|+..
T Consensus 162 ~~~-------------------------------------------g-~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 162 EYA-------------------------------------------G-VHETQDALLDRL-ITIFMDYPDIDTETAILRA 196 (262)
T ss_pred ccc-------------------------------------------c-eecccHHHHhhc-EEEECCCCCHHHHHHHHHH
Confidence 100 0 001345677787 4567888899998888874
No 112
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.8e-13 Score=150.34 Aligned_cols=185 Identities=25% Similarity=0.329 Sum_probs=122.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
|+||+.+++.|..++... . .+..+||+||||||||++|+++|+.+.+
T Consensus 16 vvGq~~v~~~L~~~i~~~-------~-----------------------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~ 65 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQG-------R-----------------------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGE 65 (504)
T ss_pred hcChHHHHHHHHHHHHcC-------C-----------------------CCeEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 899999999998887521 0 0133599999999999999999998853
Q ss_pred --------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccc
Q 005762 352 --------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (678)
Q Consensus 352 --------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~ 411 (678)
.++.+++.+ ..+ ...++.+.......-......||||||+|.+...
T Consensus 66 ~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----~~~---vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~------ 131 (504)
T PRK14963 66 DPKPCGECESCLAVRRGAHPDVLEIDAAS-----NNS---VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS------ 131 (504)
T ss_pred CCCCCCcChhhHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhccccCCCeEEEEECccccCHH------
Confidence 133444321 112 1223333322221111235679999999988765
Q ss_pred cCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccc
Q 005762 412 SRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMR 491 (678)
Q Consensus 412 ~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~ 491 (678)
.++.||+.|+. ...+++||++++..
T Consensus 132 --------a~naLLk~LEe---------------------p~~~t~~Il~t~~~-------------------------- 156 (504)
T PRK14963 132 --------AFNALLKTLEE---------------------PPEHVIFILATTEP-------------------------- 156 (504)
T ss_pred --------HHHHHHHHHHh---------------------CCCCEEEEEEcCCh--------------------------
Confidence 89999999983 11233455433311
Q ss_pred cCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHH
Q 005762 492 AGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA 571 (678)
Q Consensus 492 ~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ea 571 (678)
..+.+.+.+|.. ++.|.+++.+++.+.+... +...+ +.+++++
T Consensus 157 -----------------------~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i-----------~~~eg--i~i~~~A 199 (504)
T PRK14963 157 -----------------------EKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRL-----------LEAEG--REAEPEA 199 (504)
T ss_pred -----------------------hhCChHHhcceE-EEEecCCCHHHHHHHHHHH-----------HHHcC--CCCCHHH
Confidence 014445556654 6899999999999887742 22234 4479999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 572 LRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 572 l~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
+++|++.+ +...|.+.+.++.++.
T Consensus 200 l~~ia~~s---~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 200 LQLVARLA---DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 99999986 6778888888888753
No 113
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.48 E-value=3.3e-13 Score=161.42 Aligned_cols=190 Identities=25% Similarity=0.335 Sum_probs=134.6
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.++. |+|++..++.+.+.+.+. .+.|+||+||||||||++|+.+|+.+
T Consensus 177 ~~~~-~igr~~ei~~~~~~L~r~-------------------------------~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 177 NLDP-VIGREKEIERVIQILGRR-------------------------------TKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCC-CCCcHHHHHHHHHHHccc-------------------------------ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4454 899999999998888521 25799999999999999999999876
Q ss_pred ----------CCCEEEEeccccc-cccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 350 ----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 350 ----------~~~fv~id~s~l~-~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
+.+++.+|++.+. .+.|.|+. +..+..++..+.. ..+.||||||||.+...... .. +.
T Consensus 225 ~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~-~g-----~~ 293 (821)
T CHL00095 225 VNRDVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAA-EG-----AI 293 (821)
T ss_pred HhCCCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCC-CC-----cc
Confidence 3689999998765 34677765 7778888876532 35679999999999865321 11 12
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
++.+.|...|... .+.+|.+++..+..+.+.
T Consensus 294 ~~a~lLkp~l~rg-----------------------~l~~IgaTt~~ey~~~ie-------------------------- 324 (821)
T CHL00095 294 DAANILKPALARG-----------------------ELQCIGATTLDEYRKHIE-------------------------- 324 (821)
T ss_pred cHHHHhHHHHhCC-----------------------CcEEEEeCCHHHHHHHHh--------------------------
Confidence 4788888888721 234555555332222111
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
..|.|..||.. |.+..++.++...|+.. +...|.+.. .+.++++++..++..
T Consensus 325 ------------------~D~aL~rRf~~-I~v~ep~~~e~~aILr~----l~~~~e~~~-----~v~i~deal~~i~~l 376 (821)
T CHL00095 325 ------------------KDPALERRFQP-VYVGEPSVEETIEILFG----LRSRYEKHH-----NLSISDKALEAAAKL 376 (821)
T ss_pred ------------------cCHHHHhcceE-EecCCCCHHHHHHHHHH----HHHHHHHHc-----CCCCCHHHHHHHHHH
Confidence 45677888865 58888999999999874 555555432 233899999988887
Q ss_pred h
Q 005762 579 A 579 (678)
Q Consensus 579 a 579 (678)
+
T Consensus 377 s 377 (821)
T CHL00095 377 S 377 (821)
T ss_pred h
Confidence 5
No 114
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.48 E-value=5.8e-13 Score=148.48 Aligned_cols=217 Identities=17% Similarity=0.312 Sum_probs=142.3
Q ss_pred CCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHHH
Q 005762 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYKL 378 (678)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~l 378 (678)
+.++.+..+.+....+.....++|+.|++||||+++|++++... +.+|+.++|..+.+. .++|.... .+...
T Consensus 147 ~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~-~~~~~ 225 (457)
T PRK11361 147 TNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKG-AFTGA 225 (457)
T ss_pred cccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCC-CCCCC
Confidence 44555555665666666677899999999999999999999876 469999999987521 11111100 00000
Q ss_pred HHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce-eecCCCCcccCCCCCeEEEecCcce
Q 005762 379 LAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSIQMDTKDIL 457 (678)
Q Consensus 379 ~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~-v~v~~~g~~~~~~~~~i~idtsNil 457 (678)
.....+.+..+.+|+||||||+.+... +|..|+.+|+... ..+ |.. .. -..|+.
T Consensus 226 ~~~~~g~~~~a~~gtl~ld~i~~l~~~--------------~q~~L~~~l~~~~~~~~---~~~-----~~---~~~~~r 280 (457)
T PRK11361 226 QTLRQGLFERANEGTLLLDEIGEMPLV--------------LQAKLLRILQEREFERI---GGH-----QT---IKVDIR 280 (457)
T ss_pred CCCCCCceEECCCCEEEEechhhCCHH--------------HHHHHHHHHhcCcEEeC---CCC-----ce---eeeceE
Confidence 001123345567899999999999987 9999999998433 222 110 11 123556
Q ss_pred EEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCH
Q 005762 458 FICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTE 536 (678)
Q Consensus 458 fI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Lse 536 (678)
+|++++ .++++.+.++ .|.++|..|+.. .|.++||.+
T Consensus 281 ii~~t~-~~l~~~~~~g-----------------------------------------~~~~~l~~~l~~~~i~~ppLre 318 (457)
T PRK11361 281 IIAATN-RDLQAMVKEG-----------------------------------------TFREDLFYRLNVIHLILPPLRD 318 (457)
T ss_pred EEEeCC-CCHHHHHHcC-----------------------------------------CchHHHHHHhccceecCCChhh
Confidence 677665 3444444322 266677777755 678888885
Q ss_pred --HHHHHHHhchHHHHHHHHHHHHhcCCce-eeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 537 --DQLVKVLTEPKNALGKQYKRLFSMNNVK-LHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 537 --eeL~~Il~~~ln~L~~q~~~~~~~~gv~-l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
+|+..++.. ++.++...+ +.. +.+++++++.|..+.| ..+.|+|+++|++.+..
T Consensus 319 R~~di~~l~~~----~l~~~~~~~---~~~~~~~~~~a~~~L~~~~w--pgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 319 RREDISLLANH----FLQKFSSEN---QRDIIDIDPMAMSLLTAWSW--PGNIRELSNVIERAVVM 375 (457)
T ss_pred chhhHHHHHHH----HHHHHHHHc---CCCCCCcCHHHHHHHHcCCC--CCcHHHHHHHHHHHHHh
Confidence 677666654 444444422 333 5699999999999887 77889999999997753
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=7e-13 Score=151.17 Aligned_cols=185 Identities=25% Similarity=0.380 Sum_probs=121.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
|+||+.+++.|..++... + ....+||+||+|||||++|+++|+.+++.
T Consensus 18 ivGq~~v~~~L~~~i~~~--~----------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~ 67 (527)
T PRK14969 18 LVGQEHVVRALTNALEQQ--R----------------------------LHHAYLFTGTRGVGKTTLARILAKSLNCETG 67 (527)
T ss_pred hcCcHHHHHHHHHHHHcC--C----------------------------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 899999999998887521 0 01347999999999999999999999652
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
++.+++.. ..+ ...+++++..+...-......|+||||+|+++..
T Consensus 68 ~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~-----~~~---vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~----- 134 (527)
T PRK14969 68 VTATPCGVCSACLEIDSGRFVDLIEVDAAS-----NTQ---VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS----- 134 (527)
T ss_pred CCCCCCCCCHHHHHHhcCCCCceeEeeccc-----cCC---HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH-----
Confidence 22233221 111 2334555544332222235579999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ..+++||++++.. .
T Consensus 135 ---------a~naLLK~LEep---------------------p~~~~fIL~t~d~--~---------------------- 160 (527)
T PRK14969 135 ---------AFNAMLKTLEEP---------------------PEHVKFILATTDP--Q---------------------- 160 (527)
T ss_pred ---------HHHHHHHHHhCC---------------------CCCEEEEEEeCCh--h----------------------
Confidence 899999999841 1233555544311 0
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+++|+ .++.|.+++.+++.+.+... +...+ +.++++
T Consensus 161 -------------------------kil~tI~SRc-~~~~f~~l~~~~i~~~L~~i-----------l~~eg--i~~~~~ 201 (527)
T PRK14969 161 -------------------------KIPVTVLSRC-LQFNLKQMPPPLIVSHLQHI-----------LEQEN--IPFDAT 201 (527)
T ss_pred -------------------------hCchhHHHHH-HHHhcCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 0223344554 35799999999988877631 22234 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
+++.|++.+ +...|.+.+.++.++.
T Consensus 202 al~~la~~s---~Gslr~al~lldqai~ 226 (527)
T PRK14969 202 ALQLLARAA---AGSMRDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999985 5557888888876653
No 116
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.47 E-value=4.2e-13 Score=151.69 Aligned_cols=249 Identities=18% Similarity=0.228 Sum_probs=137.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC--C
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--P 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--~ 352 (678)
|+||+.+++.|..++. ...+++|+||||||||++|+.++..+.- .
T Consensus 194 v~Gq~~~~~al~~aa~---------------------------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~ 240 (499)
T TIGR00368 194 IKGQQHAKRALEIAAA---------------------------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTN 240 (499)
T ss_pred hcCcHHHHhhhhhhcc---------------------------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCC
Confidence 8999999988766552 1368999999999999999999986621 1
Q ss_pred EEEEeccccccc-c------------cc----ccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCC
Q 005762 353 FVIADATTLTQA-G------------YV----GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (678)
Q Consensus 353 fv~id~s~l~~s-g------------yv----G~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~ 415 (678)
-..++.+.+... + |+ .......+........+.+..+++||||||||+.+.+.
T Consensus 241 ~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~---------- 310 (499)
T TIGR00368 241 EEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS---------- 310 (499)
T ss_pred cEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH----------
Confidence 111222211100 0 00 00000000000011234567788999999999999877
Q ss_pred chhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCC
Q 005762 416 SGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVT 495 (678)
Q Consensus 416 s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~ 495 (678)
+|+.|++.||...+.+...+.....+..+..|.++|.. -+|.+.+ +... -.+
T Consensus 311 ----~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npc--pcg~~~~------------------~~~~----c~c 362 (499)
T TIGR00368 311 ----VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPC--PCGHYGG------------------KNTH----CRC 362 (499)
T ss_pred ----HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCc--ccCcCCC------------------Cccc----ccC
Confidence 99999999996665554444333333333444444431 0222211 0000 001
Q ss_pred chHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHH---------HHhchHHHHHHHHHHHHhcC-Cce-
Q 005762 496 DAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVK---------VLTEPKNALGKQYKRLFSMN-NVK- 564 (678)
Q Consensus 496 ~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~---------Il~~~ln~L~~q~~~~~~~~-gv~- 564 (678)
.......++.+ +..+|++|||.++.+++++.+++.+ |-+....+-..|.. ++... ++.
T Consensus 363 ~~~~~~~y~~~----------is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~-R~~~~~~~~~ 431 (499)
T TIGR00368 363 SPQQISRYWNK----------LSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNI-RYEKFANINK 431 (499)
T ss_pred CHHHHHHHhhh----------ccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHH-HhcCCCCCcc
Confidence 11112233332 7889999999999999998776633 11111112222222 22211 011
Q ss_pred ------------eeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 005762 565 ------------LHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 607 (678)
Q Consensus 565 ------------l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~ 607 (678)
..+++++.+.|.+..-..+..+|+..+++. +...+.++...
T Consensus 432 N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--vArTiAdL~g~ 484 (499)
T TIGR00368 432 NADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--VARTIADLKEE 484 (499)
T ss_pred cccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHHHhhcCC
Confidence 235667777666654455788999998886 55566666544
No 117
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.47 E-value=1.8e-13 Score=153.79 Aligned_cols=190 Identities=26% Similarity=0.372 Sum_probs=133.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
|+||+.+++.|..++.+. |+. ..+||.||-|||||++||.+|+.+++.
T Consensus 18 vvGQe~v~~~L~nal~~~--ri~----------------------------hAYlfsG~RGvGKTt~Ari~AkalNC~~~ 67 (515)
T COG2812 18 VVGQEHVVKTLSNALENG--RIA----------------------------HAYLFSGPRGVGKTTIARILAKALNCENG 67 (515)
T ss_pred hcccHHHHHHHHHHHHhC--cch----------------------------hhhhhcCCCCcCchhHHHHHHHHhcCCCC
Confidence 799999999999999632 222 458999999999999999999999653
Q ss_pred -----EEEE-ecc--------cccc---ccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCC
Q 005762 353 -----FVIA-DAT--------TLTQ---AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (678)
Q Consensus 353 -----fv~i-d~s--------~l~~---sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~ 415 (678)
+..+ .|. ++.+ +.-.| -..++++.+...+.-.....-|++|||+|.|+..
T Consensus 68 ~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~g---VddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~---------- 134 (515)
T COG2812 68 PTAEPCGKCISCKEINEGSLIDVIEIDAASNTG---VDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ---------- 134 (515)
T ss_pred CCCCcchhhhhhHhhhcCCcccchhhhhhhccC---hHHHHHHHHHhccCCccccceEEEEecHHhhhHH----------
Confidence 1110 011 1111 11112 2346666666666555567789999999999887
Q ss_pred chhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCC
Q 005762 416 SGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVT 495 (678)
Q Consensus 416 s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~ 495 (678)
..|+||+.||. ...++.||++++-..
T Consensus 135 ----afNALLKTLEE---------------------PP~hV~FIlATTe~~----------------------------- 160 (515)
T COG2812 135 ----AFNALLKTLEE---------------------PPSHVKFILATTEPQ----------------------------- 160 (515)
T ss_pred ----HHHHHhccccc---------------------CccCeEEEEecCCcC-----------------------------
Confidence 99999999994 123567888654211
Q ss_pred chHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHH
Q 005762 496 DAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVI 575 (678)
Q Consensus 496 ~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~L 575 (678)
.+.+..++|+.. +.|..++.+++...+... + .+..+.++++++..|
T Consensus 161 --------------------Kip~TIlSRcq~-f~fkri~~~~I~~~L~~i-----------~--~~E~I~~e~~aL~~i 206 (515)
T COG2812 161 --------------------KIPNTILSRCQR-FDFKRLDLEEIAKHLAAI-----------L--DKEGINIEEDALSLI 206 (515)
T ss_pred --------------------cCchhhhhcccc-ccccCCCHHHHHHHHHHH-----------H--HhcCCccCHHHHHHH
Confidence 134455555544 689999999888876642 1 244566999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHH
Q 005762 576 AKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 576 a~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
++.+ ..+.|+.-++++.++.
T Consensus 207 a~~a---~Gs~RDalslLDq~i~ 226 (515)
T COG2812 207 ARAA---EGSLRDALSLLDQAIA 226 (515)
T ss_pred HHHc---CCChhhHHHHHHHHHH
Confidence 9986 7778988888877653
No 118
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=151.09 Aligned_cols=184 Identities=22% Similarity=0.310 Sum_probs=121.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
||||+++++.|..++... . .+..+||+||+|||||++|+++|+.+++.
T Consensus 18 iiGq~~v~~~L~~~i~~~-------~-----------------------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~ 67 (576)
T PRK14965 18 LTGQEHVSRTLQNAIDTG-------R-----------------------VAHAFLFTGARGVGKTSTARILAKALNCEQG 67 (576)
T ss_pred ccCcHHHHHHHHHHHHcC-------C-----------------------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCC
Confidence 899999999998887411 0 12457999999999999999999998642
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
++++|+.+. .| ...++++.......-..+...|++|||+|.|+..
T Consensus 68 ~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~-----~~---v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~----- 134 (576)
T PRK14965 68 LTAEPCNVCPPCVEITEGRSVDVFEIDGASN-----TG---VDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN----- 134 (576)
T ss_pred CCCCCCCccHHHHHHhcCCCCCeeeeeccCc-----cC---HHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-----
Confidence 333333221 12 1234444443322212245579999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ..+++||++++.. .+
T Consensus 135 ---------a~naLLk~LEep---------------------p~~~~fIl~t~~~--~k--------------------- 161 (576)
T PRK14965 135 ---------AFNALLKTLEEP---------------------PPHVKFIFATTEP--HK--------------------- 161 (576)
T ss_pred ---------HHHHHHHHHHcC---------------------CCCeEEEEEeCCh--hh---------------------
Confidence 899999999931 1234566544311 11
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+.+.+++|+. .+.|.+++.+++.+.+... +...+ +.++++
T Consensus 162 --------------------------l~~tI~SRc~-~~~f~~l~~~~i~~~L~~i-----------~~~eg--i~i~~~ 201 (576)
T PRK14965 162 --------------------------VPITILSRCQ-RFDFRRIPLQKIVDRLRYI-----------ADQEG--ISISDA 201 (576)
T ss_pred --------------------------hhHHHHHhhh-hhhcCCCCHHHHHHHHHHH-----------HHHhC--CCCCHH
Confidence 2233444543 5789999999988776631 22224 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++..|++.+ +.+.|.+.+.++.++
T Consensus 202 al~~la~~a---~G~lr~al~~Ldqli 225 (576)
T PRK14965 202 ALALVARKG---DGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999986 566788888877655
No 119
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=4.2e-13 Score=160.78 Aligned_cols=188 Identities=20% Similarity=0.286 Sum_probs=126.8
Q ss_pred HhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 269 ~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+. |||++..++.+.+.|.++ .+.++||+||||||||++|+.+|..
T Consensus 175 ~~l~~-vigr~~ei~~~i~iL~r~-------------------------------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 175 GKLDP-VIGRDEEIRRTIQVLQRR-------------------------------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CCCCc-CCCCHHHHHHHHHHHhcC-------------------------------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 34554 899999988888877522 2479999999999999999999988
Q ss_pred h----------CCCEEEEecccccc-ccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCch
Q 005762 349 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (678)
Q Consensus 349 l----------~~~fv~id~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~ 417 (678)
+ +.+++.++++.+.. ..|.|+. +..+..+|..... ...+.||||||||.+.....+ ..+
T Consensus 223 i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~~---~~~~~ILfIDEih~l~~~~~~------~~~ 292 (857)
T PRK10865 223 IINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKA------DGA 292 (857)
T ss_pred hhcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHHH---cCCCeEEEEecHHHhccCCCC------ccc
Confidence 7 67899999987653 3476765 6777777765321 125679999999999765221 122
Q ss_pred hHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCch
Q 005762 418 EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDA 497 (678)
Q Consensus 418 ~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~ 497 (678)
.++++.|+.+|+. ..+.+|.+++..+..+.+
T Consensus 293 ~d~~~~lkp~l~~-----------------------g~l~~IgaTt~~e~r~~~-------------------------- 323 (857)
T PRK10865 293 MDAGNMLKPALAR-----------------------GELHCVGATTLDEYRQYI-------------------------- 323 (857)
T ss_pred hhHHHHhcchhhc-----------------------CCCeEEEcCCCHHHHHHh--------------------------
Confidence 3478888888761 134566655543322111
Q ss_pred HhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHH
Q 005762 498 AVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVI 575 (678)
Q Consensus 498 ~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~L 575 (678)
-+.+.|.+||+.+ .+..++.++...|+.. +..+|.. ...+.++++++...
T Consensus 324 ------------------~~d~al~rRf~~i-~v~eP~~~~~~~iL~~----l~~~~e~-----~~~v~~~d~a~~~a 373 (857)
T PRK10865 324 ------------------EKDAALERRFQKV-FVAEPSVEDTIAILRG----LKERYEL-----HHHVQITDPAIVAA 373 (857)
T ss_pred ------------------hhcHHHHhhCCEE-EeCCCCHHHHHHHHHH----Hhhhhcc-----CCCCCcCHHHHHHH
Confidence 1567888999865 4556688999888863 4433322 23455666666554
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.47 E-value=5.2e-13 Score=157.31 Aligned_cols=191 Identities=24% Similarity=0.376 Sum_probs=130.5
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.|+. ++|.+..++.+.+.+.+. .+.|+||+||||||||++|+.+|..+
T Consensus 184 ~~~~-liGR~~ei~~~i~iL~r~-------------------------------~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 184 GIDP-LIGREKELERAIQVLCRR-------------------------------RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCc-CcCCCHHHHHHHHHHhcc-------------------------------CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4454 899999999998877521 24789999999999999999999765
Q ss_pred ----------CCCEEEEecccccc-ccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 350 ----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 350 ----------~~~fv~id~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
+..++.++.+.+.. ..|.|+. +..+..++... ....++||||||||.+...... .....
T Consensus 232 ~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l----~~~~~~ILfIDEIh~L~g~g~~-----~~g~~ 301 (758)
T PRK11034 232 VQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQL----EQDTNSILFIDEIHTIIGAGAA-----SGGQV 301 (758)
T ss_pred HhcCCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHH----HhcCCCEEEeccHHHHhccCCC-----CCcHH
Confidence 34555666555442 3456654 56666666543 2346789999999999765221 11123
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
++.+.|..+++. ..+.+|.++++.++.+.+.
T Consensus 302 d~~nlLkp~L~~-----------------------g~i~vIgATt~~E~~~~~~-------------------------- 332 (758)
T PRK11034 302 DAANLIKPLLSS-----------------------GKIRVIGSTTYQEFSNIFE-------------------------- 332 (758)
T ss_pred HHHHHHHHHHhC-----------------------CCeEEEecCChHHHHHHhh--------------------------
Confidence 467777777762 1235566665433222211
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
..|.|.+||+ .|.+++++.++..+||.. +...|.. ...+.|++++++.+++.
T Consensus 333 ------------------~D~AL~rRFq-~I~v~ePs~~~~~~IL~~----~~~~ye~-----~h~v~i~~~al~~a~~l 384 (758)
T PRK11034 333 ------------------KDRALARRFQ-KIDITEPSIEETVQIING----LKPKYEA-----HHDVRYTAKAVRAAVEL 384 (758)
T ss_pred ------------------ccHHHHhhCc-EEEeCCCCHHHHHHHHHH----HHHHhhh-----ccCCCcCHHHHHHHHHH
Confidence 5678889996 589999999999999984 4445543 34567999999887776
Q ss_pred h
Q 005762 579 A 579 (678)
Q Consensus 579 a 579 (678)
+
T Consensus 385 s 385 (758)
T PRK11034 385 A 385 (758)
T ss_pred h
Confidence 4
No 121
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1e-12 Score=145.01 Aligned_cols=184 Identities=21% Similarity=0.306 Sum_probs=116.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
|+||+.+++.|..++.+. + .+..+||+||||||||++|+++|+.+.+.
T Consensus 18 iiGq~~~~~~L~~~~~~~--~----------------------------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~ 67 (397)
T PRK14955 18 ITAQEHITRTIQNSLRMG--R----------------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRM 67 (397)
T ss_pred ccChHHHHHHHHHHHHhC--C----------------------------cceeEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 899999999987777521 0 12459999999999999999999999652
Q ss_pred ------------------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccch
Q 005762 353 ------------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (678)
Q Consensus 353 ------------------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 402 (678)
|+.++..+ ..+ ...++.+.......-..+...||||||+|.+
T Consensus 68 ~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~-----~~~---id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l 139 (397)
T PRK14955 68 IDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAAS-----NNS---VDDIRLLRENVRYGPQKGRYRVYIIDEVHML 139 (397)
T ss_pred cCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccc-----cCC---HHHHHHHHHHHhhchhcCCeEEEEEeChhhC
Confidence 11111111 011 2334444333321112245579999999999
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCc
Q 005762 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (678)
Q Consensus 403 ~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF 482 (678)
+.. .++.|++.||.- ....+||++++ ++.+
T Consensus 140 ~~~--------------~~~~LLk~LEep---------------------~~~t~~Il~t~--~~~k------------- 169 (397)
T PRK14955 140 SIA--------------AFNAFLKTLEEP---------------------PPHAIFIFATT--ELHK------------- 169 (397)
T ss_pred CHH--------------HHHHHHHHHhcC---------------------CCCeEEEEEeC--ChHH-------------
Confidence 876 889999999831 01223443332 1111
Q ss_pred CcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCC
Q 005762 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNN 562 (678)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~g 562 (678)
+.+.+.+|.. ++.|.+++++++.+.+... +...
T Consensus 170 ----------------------------------l~~tl~sR~~-~v~f~~l~~~ei~~~l~~~-----------~~~~- 202 (397)
T PRK14955 170 ----------------------------------IPATIASRCQ-RFNFKRIPLEEIQQQLQGI-----------CEAE- 202 (397)
T ss_pred ----------------------------------hHHHHHHHHH-HhhcCCCCHHHHHHHHHHH-----------HHHc-
Confidence 1222333332 5789999999998877642 1122
Q ss_pred ceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 563 VKLHFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 563 v~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
.+.++++++++|+..+ +...|.+.+.++++.
T Consensus 203 -g~~i~~~al~~l~~~s---~g~lr~a~~~L~kl~ 233 (397)
T PRK14955 203 -GISVDADALQLIGRKA---QGSMRDAQSILDQVI 233 (397)
T ss_pred -CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 3559999999999986 566777777777654
No 122
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.46 E-value=5e-13 Score=144.33 Aligned_cols=228 Identities=20% Similarity=0.308 Sum_probs=133.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l----- 349 (678)
|+||+++|+.|..++... ...+++|.|++|+|||++++++++.+
T Consensus 6 ivgq~~~~~al~~~~~~~-------------------------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~ 54 (337)
T TIGR02030 6 IVGQDEMKLALLLNVIDP-------------------------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKA 54 (337)
T ss_pred cccHHHHHHHHHHHhcCC-------------------------------CCCeEEEEcCCCCCHHHHHHHHHHhhccccc
Confidence 899999999886665311 13689999999999999999999888
Q ss_pred --CCCEE---------EEecc-------------------cc----ccccccccch-HHHH-HHHHHhhchhHhhhcCcE
Q 005762 350 --NVPFV---------IADAT-------------------TL----TQAGYVGEDV-ESIL-YKLLAQAEFNVEAAQQGM 393 (678)
Q Consensus 350 --~~~fv---------~id~s-------------------~l----~~sgyvG~~~-~~~l-~~l~~~a~~~v~~a~~gI 393 (678)
+.+|- ..+|. ++ ++..++|... ...+ ...+....+.+..+.+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~Gv 134 (337)
T TIGR02030 55 VAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGI 134 (337)
T ss_pred ccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCE
Confidence 22221 01111 00 0012223211 1111 011112334555678899
Q ss_pred EEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHh
Q 005762 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISE 473 (678)
Q Consensus 394 LfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~ 473 (678)
||||||+.+.+. +|+.|+++|+...+.+...|.... . ..++++|++.|..
T Consensus 135 L~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~~~~-------~-~~r~iviat~np~-------- 184 (337)
T TIGR02030 135 LYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGISIR-------H-PARFVLVGSGNPE-------- 184 (337)
T ss_pred EEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCEEEE-------c-CCCEEEEeccccc--------
Confidence 999999999887 999999999843332322222111 1 1244555544421
Q ss_pred hcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCH-HHHHHHHhchHHH---
Q 005762 474 RRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE-DQLVKVLTEPKNA--- 549 (678)
Q Consensus 474 r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Lse-eeL~~Il~~~ln~--- 549 (678)
+..|.+.|+.||...+.+..+.. ++..+|+......
T Consensus 185 ----------------------------------------eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~ 224 (337)
T TIGR02030 185 ----------------------------------------EGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDAD 224 (337)
T ss_pred ----------------------------------------cCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccC
Confidence 11278889999999888988876 7777777652110
Q ss_pred ---HHHHH--------HHHH--hcCCceeeeCHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHhc
Q 005762 550 ---LGKQY--------KRLF--SMNNVKLHFTEKALRVIAKKATAKNT-GARGLRAILESILTEAMYE 603 (678)
Q Consensus 550 ---L~~q~--------~~~~--~~~gv~l~~t~eal~~La~~a~~~~~-GAR~Lr~iIE~il~~a~~~ 603 (678)
+.+.+ .++. ...-.++.++++++++|++.+..-.. |-|....++...-..|+.+
T Consensus 225 ~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 225 PHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred chhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 11111 0111 11123466899999999987653232 4576666666555555544
No 123
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.3e-13 Score=141.91 Aligned_cols=128 Identities=26% Similarity=0.372 Sum_probs=98.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|-|.-..++.+.+.|.-|... ..+...+| ..++..++||||||||||++|+++|..+++.|+
T Consensus 134 ~ggl~~qirelre~ielpl~n---p~lf~rvg---------------Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl 195 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTN---PELFLRVG---------------IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFL 195 (388)
T ss_pred hCChHHHHHHHHhheEeeccC---chhccccC---------------CCCCceeEEeCCCCCchhHHHHHHHHhcCCceE
Confidence 677778888888877544221 11111111 123689999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.+.++.+. .+|.|++ ...+++.|..+... .+||||+||||.+...+.+. ..++.+.+|..|.++++
T Consensus 196 ~v~ss~lv-~kyiGEs-aRlIRemf~yA~~~----~pciifmdeiDAigGRr~se---~Ts~dreiqrTLMeLln 261 (388)
T KOG0651|consen 196 KVVSSALV-DKYIGES-ARLIRDMFRYAREV----IPCIIFMDEIDAIGGRRFSE---GTSSDREIQRTLMELLN 261 (388)
T ss_pred EeeHhhhh-hhhcccH-HHHHHHHHHHHhhh----CceEEeehhhhhhccEEecc---ccchhHHHHHHHHHHHH
Confidence 99999998 5799999 88999999888765 67999999999988765433 33344678999888887
No 124
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.46 E-value=5.5e-13 Score=144.32 Aligned_cols=227 Identities=19% Similarity=0.319 Sum_probs=136.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---- 350 (678)
||||+++|.+|..++.++ ...++||.|++|||||++||.+++++.
T Consensus 19 ivGq~~~k~al~~~~~~p-------------------------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~ 67 (350)
T CHL00081 19 IVGQEEMKLALILNVIDP-------------------------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEV 67 (350)
T ss_pred HhChHHHHHHHHHhccCC-------------------------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCc
Confidence 899999999997776421 126899999999999999999998883
Q ss_pred ---CCEEEEeccc-------ccc--------------ccc----cccchHHH-----HHHHHHh-----hchhHhhhcCc
Q 005762 351 ---VPFVIADATT-------LTQ--------------AGY----VGEDVESI-----LYKLLAQ-----AEFNVEAAQQG 392 (678)
Q Consensus 351 ---~~fv~id~s~-------l~~--------------sgy----vG~~~~~~-----l~~l~~~-----a~~~v~~a~~g 392 (678)
.||. .+... +.. .-+ .|...... +...+.. ..+.+..++++
T Consensus 68 ~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~G 146 (350)
T CHL00081 68 VKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRG 146 (350)
T ss_pred cCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCC
Confidence 2343 11100 000 000 01110100 1112221 24455677889
Q ss_pred EEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHH
Q 005762 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTIS 472 (678)
Q Consensus 393 ILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~ 472 (678)
|||||||+.+.+. +|+.|+++|+...+.+...|...... ..+++|+|.|..
T Consensus 147 iL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G~s~~~p--------~rfiviaT~np~------- 197 (350)
T CHL00081 147 ILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREGISIRHP--------ARFVLVGSGNPE------- 197 (350)
T ss_pred EEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCCeeeecC--------CCEEEEeccCcc-------
Confidence 9999999999987 99999999985444443333221111 244455544421
Q ss_pred hhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcC-HHHHHHHHhchHH---
Q 005762 473 ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT-EDQLVKVLTEPKN--- 548 (678)
Q Consensus 473 ~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Ls-eeeL~~Il~~~ln--- 548 (678)
+..|.++|+.||...+.+..++ .++..+|+.....
T Consensus 198 -----------------------------------------eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~ 236 (350)
T CHL00081 198 -----------------------------------------EGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDK 236 (350)
T ss_pred -----------------------------------------cCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhcccc
Confidence 1127888999999999999887 4777777765311
Q ss_pred ---HHHHHH--------HHHHh--cCCceeeeCHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhc
Q 005762 549 ---ALGKQY--------KRLFS--MNNVKLHFTEKALRVIAKKATAKN-TGARGLRAILESILTEAMYE 603 (678)
Q Consensus 549 ---~L~~q~--------~~~~~--~~gv~l~~t~eal~~La~~a~~~~-~GAR~Lr~iIE~il~~a~~~ 603 (678)
.+.++| .++.. ..-.++.++++.+++|++.+..-. -|-|....++...-..|..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 237 NPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred ChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc
Confidence 011111 11111 112346789999999998876433 35676666666555555544
No 125
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.46 E-value=6.9e-13 Score=154.42 Aligned_cols=221 Identities=21% Similarity=0.278 Sum_probs=133.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh----
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---- 349 (678)
.|+||+.+|+.|..+..+. ...+|||.|++|||||++|++|++.+
T Consensus 5 ~ivGq~~~~~al~~~av~~-------------------------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~ 53 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDP-------------------------------RIGGVLIRGEKGTAKSTAARGLAALLPPID 53 (633)
T ss_pred hhcChHHHHHHHHHHhhCC-------------------------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCce
Confidence 3899999998886665311 12579999999999999999999998
Q ss_pred -------------------------------CCCEEEEecccccccccccc-chHHHHH-HHHHhhchhHhhhcCcEEEE
Q 005762 350 -------------------------------NVPFVIADATTLTQAGYVGE-DVESILY-KLLAQAEFNVEAAQQGMVYI 396 (678)
Q Consensus 350 -------------------------------~~~fv~id~s~l~~sgyvG~-~~~~~l~-~l~~~a~~~v~~a~~gILfI 396 (678)
..||+.+.++... ..++|. +....+. ..+....+.+..+.++||||
T Consensus 54 ~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~-~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~l 132 (633)
T TIGR02442 54 VVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATE-DRVVGSLDIERALREGEKAFQPGLLAEAHRGILYI 132 (633)
T ss_pred eccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcH-HHcCCcccHHHHhhcCCeeecCcceeecCCCeEEe
Confidence 2467766554322 223342 2121111 01111244556678899999
Q ss_pred cCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcc
Q 005762 397 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQ 476 (678)
Q Consensus 397 DEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~ 476 (678)
|||+++.+. +|+.||++|+...+.+...|... ....++++|++.|..+
T Consensus 133 DEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~~--------~~~~~~~lIat~np~e---------- 180 (633)
T TIGR02442 133 DEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLSV--------SHPARFVLIGTMNPEE---------- 180 (633)
T ss_pred ChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCcee--------eecCCeEEEEecCCCC----------
Confidence 999999987 99999999984333322222111 1124556666554210
Q ss_pred cCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcC-HHHHHHHHhchHH------H
Q 005762 477 DSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT-EDQLVKVLTEPKN------A 549 (678)
Q Consensus 477 ~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Ls-eeeL~~Il~~~ln------~ 549 (678)
..|.+.|+.||+..|.+.++. .++..+|+...+. .
T Consensus 181 --------------------------------------g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~ 222 (633)
T TIGR02442 181 --------------------------------------GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEA 222 (633)
T ss_pred --------------------------------------CCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHH
Confidence 116778999999888888765 4555666653211 0
Q ss_pred HHHHHH----------HHHhcCCceeeeCHHHHHHHHHhhcCCCC-CHHHHHHHHHHH
Q 005762 550 LGKQYK----------RLFSMNNVKLHFTEKALRVIAKKATAKNT-GARGLRAILESI 596 (678)
Q Consensus 550 L~~q~~----------~~~~~~gv~l~~t~eal~~La~~a~~~~~-GAR~Lr~iIE~i 596 (678)
+...|. ......--.+.++++++++|++.+...+. |.|....++.-.
T Consensus 223 ~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~A 280 (633)
T TIGR02442 223 FAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAA 280 (633)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 111110 01111122466899999999988765555 566655555443
No 126
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.45 E-value=7.7e-13 Score=142.64 Aligned_cols=242 Identities=22% Similarity=0.278 Sum_probs=138.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---- 350 (678)
|+||+++|+.|..++.+. ...|+||.|+||||||++|+++|+.+.
T Consensus 10 i~Gq~~~~~~l~~~~~~~-------------------------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~ 58 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDP-------------------------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKA 58 (334)
T ss_pred hCCHHHHHHHHHHHHhcc-------------------------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcch
Confidence 899999999887654210 025899999999999999999999983
Q ss_pred ---CC--EEEEecc-cc----------------------ccccccccc-hHHHH-HHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 351 ---VP--FVIADAT-TL----------------------TQAGYVGED-VESIL-YKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 351 ---~~--fv~id~s-~l----------------------~~sgyvG~~-~~~~l-~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
.+ +..+.+. ++ ++...+|.- ....+ ...+....+.+..+.+++||||||+
T Consensus 59 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEIn 138 (334)
T PRK13407 59 VEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVN 138 (334)
T ss_pred hcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChH
Confidence 22 1111110 00 001122211 01110 0111122344556778999999999
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCC
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~i 480 (678)
.+.++ +|+.|++.|+...+.+...|...... ..+++|++.|..+
T Consensus 139 rl~~~--------------~q~~Lle~mee~~v~v~r~G~~~~~p--------~rfiviAt~NP~e-------------- 182 (334)
T PRK13407 139 LLEDH--------------IVDLLLDVAQSGENVVEREGLSIRHP--------ARFVLVGSGNPEE-------------- 182 (334)
T ss_pred hCCHH--------------HHHHHHHHHHcCCeEEEECCeEEecC--------CCEEEEecCCccc--------------
Confidence 99887 99999999985444333333222222 2344444444211
Q ss_pred CcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCH-HHHHHHHhchHH------HHH--
Q 005762 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE-DQLVKVLTEPKN------ALG-- 551 (678)
Q Consensus 481 gF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Lse-eeL~~Il~~~ln------~L~-- 551 (678)
..+.+.++.||...+.+.+... ++..+|+..... .+.
T Consensus 183 ----------------------------------~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~ 228 (334)
T PRK13407 183 ----------------------------------GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAK 228 (334)
T ss_pred ----------------------------------CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhcc
Confidence 1166778889988888877766 676777664211 111
Q ss_pred ---------HHHHHHHhcCCceeeeCHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcc
Q 005762 552 ---------KQYKRLFSMNNVKLHFTEKALRVIAKKATAKN-TGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDE 621 (678)
Q Consensus 552 ---------~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~-~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~ 621 (678)
.+... ....-..+.++++++++|++.+..-. -|-|+--.++...-..++.+- .-.|+.
T Consensus 229 ~~~~~~~~~~~i~~-a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~G-----------r~~V~~ 296 (334)
T PRK13407 229 WGAEDMQLRGRILG-ARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEG-----------AEAVGR 296 (334)
T ss_pred ccccccCCHHHHHH-HHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcC-----------CCeeCH
Confidence 11111 11112346789999999998875433 355665555554444444331 344666
Q ss_pred cccCCCCC
Q 005762 622 ESVGSVDA 629 (678)
Q Consensus 622 e~v~~~~~ 629 (678)
++|.....
T Consensus 297 ~Di~~~~~ 304 (334)
T PRK13407 297 SHLRSVAT 304 (334)
T ss_pred HHHHHHHH
Confidence 67754443
No 127
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.5e-12 Score=149.44 Aligned_cols=185 Identities=26% Similarity=0.393 Sum_probs=125.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
|+||+++++.|..++... + ....+||+||+|||||++|+.+|+.+++
T Consensus 18 viGq~~v~~~L~~~i~~~--~----------------------------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~ 67 (559)
T PRK05563 18 VVGQEHITKTLKNAIKQG--K----------------------------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNP 67 (559)
T ss_pred ccCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 899999999998887521 0 1245899999999999999999999853
Q ss_pred ---------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 352 ---------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 352 ---------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
.++.+|+++. .| ...++.+.......-..+...|+||||+|.|+..
T Consensus 68 ~~~~pC~~C~~C~~i~~g~~~dv~eidaas~-----~~---vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~----- 134 (559)
T PRK05563 68 PDGEPCNECEICKAITNGSLMDVIEIDAASN-----NG---VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG----- 134 (559)
T ss_pred CCCCCCCccHHHHHHhcCCCCCeEEeecccc-----CC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-----
Confidence 3444444321 12 2334444444332222345679999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ..+++||++++.. .
T Consensus 135 ---------a~naLLKtLEep---------------------p~~~ifIlatt~~--~---------------------- 160 (559)
T PRK05563 135 ---------AFNALLKTLEEP---------------------PAHVIFILATTEP--H---------------------- 160 (559)
T ss_pred ---------HHHHHHHHhcCC---------------------CCCeEEEEEeCCh--h----------------------
Confidence 899999999841 1234666654311 0
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+++|+. .+.|.+++.+++.+++... +...+ +.++++
T Consensus 161 -------------------------ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i-----------~~~eg--i~i~~~ 201 (559)
T PRK05563 161 -------------------------KIPATILSRCQ-RFDFKRISVEDIVERLKYI-----------LDKEG--IEYEDE 201 (559)
T ss_pred -------------------------hCcHHHHhHhe-EEecCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 14455666764 4789999999998887642 11224 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
++..|++.+ +.+.|.+.+.++..+.
T Consensus 202 al~~ia~~s---~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 202 ALRLIARAA---EGGMRDALSILDQAIS 226 (559)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999975 5678888888876553
No 128
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.44 E-value=1.4e-12 Score=139.44 Aligned_cols=160 Identities=18% Similarity=0.242 Sum_probs=105.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccccc-ccccccchH-----HHHHHHHHhhchhHhhhcCcEEEEcCc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-AGYVGEDVE-----SILYKLLAQAEFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~-sgyvG~~~~-----~~l~~l~~~a~~~v~~a~~gILfIDEI 399 (678)
.+|||.||||||||++|+.+|+.++.+++.++++.... ..++|...- ..+. .|...........+.+||+|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~-~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQIT-EFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCccee-EEecCcchhHHhCCeEEEechh
Confidence 68999999999999999999999999999999985442 345565311 0000 1111111011125578999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccC
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDS 478 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~ 478 (678)
|.+.++ +++.|..+|| +..+.+++.+....++..+.++.|.|. .+..+. .
T Consensus 144 n~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np--------~g~Gd~-------~ 194 (327)
T TIGR01650 144 DAGRPD--------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT--------IGLGDT-------T 194 (327)
T ss_pred hccCHH--------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC--------CCcCCC-------C
Confidence 998887 9999999999 677778776655544444444444443 220000 0
Q ss_pred CCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhc
Q 005762 479 SIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 479 ~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
| .... -+.++..+++||-+++.+..+++++-.+|+..
T Consensus 195 --G----~y~G------------------------t~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 195 --G----LYHG------------------------TQQINQAQMDRWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred --c----ceee------------------------eecCCHHHHhheeeEeeCCCCCHHHHHHHHHh
Confidence 0 0000 11267788899988888999999998888764
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.44 E-value=1.6e-12 Score=150.67 Aligned_cols=196 Identities=23% Similarity=0.313 Sum_probs=117.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh----------CCCEEEEecccccc------ccccccchHHH---HHHHHH-----
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLTQ------AGYVGEDVESI---LYKLLA----- 380 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l----------~~~fv~id~s~l~~------sgyvG~~~~~~---l~~l~~----- 380 (678)
+.+++|+||||||||++|+++++.+ +.+|+.++|..+.. ..++|...... ....+.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~ 254 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVP 254 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCC
Confidence 3679999999999999999999776 35799999986531 01122110000 011111
Q ss_pred -hhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCC----CCeEEE---e
Q 005762 381 -QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPR----GDSIQM---D 452 (678)
Q Consensus 381 -~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~----~~~i~i---d 452 (678)
.....+..+.++||||||++.|... .|+.|+++|+...+.+.......... .-...+ .
T Consensus 255 ~~~~g~v~~asgGvL~LDEi~~Ld~~--------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~ 320 (615)
T TIGR02903 255 EPKTGLVTDAHGGVLFIDEIGELDPL--------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGA 320 (615)
T ss_pred chhcCchhhcCCCeEEEeccccCCHH--------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCc
Confidence 1123344567899999999999887 99999999985443221100000000 000000 1
Q ss_pred cCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecC
Q 005762 453 TKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLT 532 (678)
Q Consensus 453 tsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~ 532 (678)
..++++|++++.. ...+.|.|.+|+.. +.|.
T Consensus 321 ~~~~VLI~aTt~~------------------------------------------------~~~l~~aLrSR~~~-i~~~ 351 (615)
T TIGR02903 321 PADFVLIGATTRD------------------------------------------------PEEINPALRSRCAE-VFFE 351 (615)
T ss_pred cceEEEEEecccc------------------------------------------------ccccCHHHHhceeE-EEeC
Confidence 1234444433211 00155677788864 5899
Q ss_pred CcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 005762 533 ALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (678)
Q Consensus 533 ~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a 600 (678)
+|+.+|+..|+... ..+ ..+.+++++++.|++++| .+|..-++++.++.-+
T Consensus 352 pls~edi~~Il~~~----a~~---------~~v~ls~eal~~L~~ys~----~gRraln~L~~~~~~~ 402 (615)
T TIGR02903 352 PLTPEDIALIVLNA----AEK---------INVHLAAGVEELIARYTI----EGRKAVNILADVYGYA 402 (615)
T ss_pred CCCHHHHHHHHHHH----HHH---------cCCCCCHHHHHHHHHCCC----cHHHHHHHHHHHHHHH
Confidence 99999999998852 111 124589999999999876 3455556776665444
No 130
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=3.6e-12 Score=146.88 Aligned_cols=189 Identities=24% Similarity=0.316 Sum_probs=122.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
||||+.+++.|..++... . ....+||+||+|||||++|+++|+.+++...
T Consensus 26 liGq~~~v~~L~~~~~~g-------r-----------------------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~ 75 (598)
T PRK09111 26 LIGQEAMVRTLTNAFETG-------R-----------------------IAQAFMLTGVRGVGKTTTARILARALNYEGP 75 (598)
T ss_pred hcCcHHHHHHHHHHHHcC-------C-----------------------CCceEEEECCCCCCHHHHHHHHHHhhCcCCc
Confidence 899999999998877411 0 1256999999999999999999999865321
Q ss_pred EEe-------------cc--------ccc---cccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 355 IAD-------------AT--------TLT---QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 355 ~id-------------~s--------~l~---~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
..+ |. ++. .....| -..+++++......-..+...||||||+|.|...
T Consensus 76 ~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~g---vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~----- 147 (598)
T PRK09111 76 DGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTG---VDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA----- 147 (598)
T ss_pred cccCCCccccCcccHHHHHHhcCCCCceEEecccccCC---HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH-----
Confidence 111 10 111 011122 2234555444433223346679999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- -.+++||++++ ++++
T Consensus 148 ---------a~naLLKtLEeP---------------------p~~~~fIl~tt--e~~k--------------------- 174 (598)
T PRK09111 148 ---------AFNALLKTLEEP---------------------PPHVKFIFATT--EIRK--------------------- 174 (598)
T ss_pred ---------HHHHHHHHHHhC---------------------CCCeEEEEEeC--Chhh---------------------
Confidence 899999999831 01234444332 1111
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+.+.+.+|+ .++.|.+++++++.+.+... +...+ +.++++
T Consensus 175 --------------------------ll~tI~SRc-q~~~f~~l~~~el~~~L~~i-----------~~keg--i~i~~e 214 (598)
T PRK09111 175 --------------------------VPVTVLSRC-QRFDLRRIEADVLAAHLSRI-----------AAKEG--VEVEDE 214 (598)
T ss_pred --------------------------hhHHHHhhe-eEEEecCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 223344555 36899999999998887742 12223 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++++|++.+ +...|.+.+.++.++
T Consensus 215 Al~lIa~~a---~Gdlr~al~~Ldkli 238 (598)
T PRK09111 215 ALALIARAA---EGSVRDGLSLLDQAI 238 (598)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999986 567888888887765
No 131
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.43 E-value=1.9e-12 Score=147.18 Aligned_cols=254 Identities=17% Similarity=0.241 Sum_probs=145.2
Q ss_pred HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHH
Q 005762 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 267 l~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA 346 (678)
|.+.+...|+|++.+|+.|.-++... ..... ..........|+||+|+||||||++|++++
T Consensus 197 l~~si~p~i~G~~~~k~~l~l~l~gg--------------~~~~~-----~~~~~~r~~~~vLL~G~pGtGKs~lar~l~ 257 (509)
T smart00350 197 LSRSLAPSIYGHEDIKKAILLLLFGG--------------VHKNL-----PDGMKIRGDINILLLGDPGTAKSQLLKYVE 257 (509)
T ss_pred HHHhhCccccCcHHHHHHHHHHHhCC--------------Ccccc-----CCCccccccceEEEeCCCChhHHHHHHHHH
Confidence 55667777999999998887666411 00000 000001124699999999999999999999
Q ss_pred HHhCC-CEEE---EeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHH
Q 005762 347 RHVNV-PFVI---ADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (678)
Q Consensus 347 ~~l~~-~fv~---id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~ 422 (678)
+.+.. .|+. .++..++.. .........+....+.+..+++|+++|||++++.+. .|.
T Consensus 258 ~~~~r~~~~~~~~~~~~~l~~~-----~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~--------------~q~ 318 (509)
T smart00350 258 KTAPRAVYTTGKGSSAVGLTAA-----VTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDS--------------DRT 318 (509)
T ss_pred HHcCcceEcCCCCCCcCCcccc-----ceEccCcceEEecCccEEecCCCEEEEechhhCCHH--------------HHH
Confidence 98854 3332 122223211 000000011111123455678899999999999887 999
Q ss_pred HHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHH
Q 005762 423 ALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSS 502 (678)
Q Consensus 423 ~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ 502 (678)
.|+++||...+++...|.....+ .++.+|++.|+.. .. |.. ...
T Consensus 319 ~L~e~me~~~i~i~k~G~~~~l~--------~~~~viAa~NP~~-------g~------y~~---------------~~~ 362 (509)
T smart00350 319 AIHEAMEQQTISIAKAGITTTLN--------ARCSVLAAANPIG-------GR------YDP---------------KLT 362 (509)
T ss_pred HHHHHHhcCEEEEEeCCEEEEec--------CCcEEEEEeCCCC-------cc------cCC---------------CcC
Confidence 99999996666554444332222 3345555555331 00 000 000
Q ss_pred HHhhcchhhhhhhcCCcccccccceEEec-CCcCHHHHHHHHhchHH-------------------HHHHHHHHHHhcCC
Q 005762 503 LLESVESSDLIAYGLIPEFVGRFPILVSL-TALTEDQLVKVLTEPKN-------------------ALGKQYKRLFSMNN 562 (678)
Q Consensus 503 ll~~v~~edLi~~g~~Pefl~R~~~iv~f-~~LseeeL~~Il~~~ln-------------------~L~~q~~~~~~~~g 562 (678)
+.+ +..+.|.+++|||.++.+ +..+++.-.+|+...++ .++++|....+ ..
T Consensus 363 ~~~--------n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar-~~ 433 (509)
T smart00350 363 PEE--------NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAR-EK 433 (509)
T ss_pred hhh--------ccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHH-hc
Confidence 111 123889999999986555 56666665666654211 22334443322 22
Q ss_pred ceeeeCHHHHHHHHHhhcC-------------CCCCHHHHHHHHHHHHHHHHhc
Q 005762 563 VKLHFTEKALRVIAKKATA-------------KNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 563 v~l~~t~eal~~La~~a~~-------------~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
+...+++++.++|.++... -....|.|..+|.-.-..|..+
T Consensus 434 ~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~ 487 (509)
T smart00350 434 IKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMR 487 (509)
T ss_pred CCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHc
Confidence 4456899999998776431 1235788888887554444433
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.43 E-value=4.8e-12 Score=134.69 Aligned_cols=191 Identities=18% Similarity=0.258 Sum_probs=123.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+||+.+++.|...+.+. ..+..+||+||||+|||++|+++++.++.+++
T Consensus 23 ~~~~~~~~~~l~~~~~~~------------------------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 23 CILPAADKETFKSIVKKG------------------------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred hcCcHHHHHHHHHHHhcC------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 899999999887776410 01244556999999999999999999998999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+++++ .. +. .....+........ ......||||||+|.+... ..++.|..+|+..
T Consensus 73 ~i~~~~-~~---~~-~i~~~l~~~~~~~~---~~~~~~vliiDe~d~l~~~-------------~~~~~L~~~le~~--- 128 (316)
T PHA02544 73 FVNGSD-CR---ID-FVRNRLTRFASTVS---LTGGGKVIIIDEFDRLGLA-------------DAQRHLRSFMEAY--- 128 (316)
T ss_pred EeccCc-cc---HH-HHHHHHHHHHHhhc---ccCCCeEEEEECcccccCH-------------HHHHHHHHHHHhc---
Confidence 999876 21 00 01111222111111 0135679999999988332 2677888888731
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
..+..||++++...
T Consensus 129 ------------------~~~~~~Ilt~n~~~------------------------------------------------ 142 (316)
T PHA02544 129 ------------------SKNCSFIITANNKN------------------------------------------------ 142 (316)
T ss_pred ------------------CCCceEEEEcCChh------------------------------------------------
Confidence 12345666554210
Q ss_pred hcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005762 515 YGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (678)
Q Consensus 515 ~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE 594 (678)
.+.|.+.+|+. ++.|+.++.++..+++.. +.+++...+...+ +.++++++..|++..+ .+.|.+-+.++
T Consensus 143 -~l~~~l~sR~~-~i~~~~p~~~~~~~il~~----~~~~~~~~~~~~~--~~i~~~al~~l~~~~~---~d~r~~l~~l~ 211 (316)
T PHA02544 143 -GIIEPLRSRCR-VIDFGVPTKEEQIEMMKQ----MIVRCKGILEAEG--VEVDMKVLAALVKKNF---PDFRRTINELQ 211 (316)
T ss_pred -hchHHHHhhce-EEEeCCCCHHHHHHHHHH----HHHHHHHHHHhcC--CCCCHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 14556677775 568999999999888875 4444444444444 4579999999999864 34565555555
Q ss_pred HH
Q 005762 595 SI 596 (678)
Q Consensus 595 ~i 596 (678)
..
T Consensus 212 ~~ 213 (316)
T PHA02544 212 RY 213 (316)
T ss_pred HH
Confidence 43
No 133
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.43 E-value=3.8e-12 Score=141.97 Aligned_cols=233 Identities=16% Similarity=0.214 Sum_probs=139.6
Q ss_pred HHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHH
Q 005762 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (678)
Q Consensus 264 p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAr 343 (678)
...+.+.|.+.|+|++++++.+..++. ...|+||+||||||||++|+
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aal---------------------------------ag~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAAL---------------------------------SGESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHc---------------------------------cCCCEEEECCCChhHHHHHH
Confidence 456888999999999999999877774 24799999999999999999
Q ss_pred HHHHHhCC--CEEEEeccccccccccccchHHHH--HHHHH-hhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 344 TLARHVNV--PFVIADATTLTQAGYVGEDVESIL--YKLLA-QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 344 alA~~l~~--~fv~id~s~l~~sgyvG~~~~~~l--~~l~~-~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
+||+.+.. +|..+.+.-.+....+|...-... ...|. ...+.+..+ .|||+|||.++.++
T Consensus 58 aLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A--~lLfLDEI~rasp~------------- 122 (498)
T PRK13531 58 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEA--EIVFLDEIWKAGPA------------- 122 (498)
T ss_pred HHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccc--cEEeecccccCCHH-------------
Confidence 99998743 565555442122233342100000 11111 111112122 39999999999887
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
+|+.||++|+.+.+++. +. .....-.+|++++| .|.+
T Consensus 123 -~QsaLLeam~Er~~t~g--~~---------~~~lp~rfiv~ATN--~LPE----------------------------- 159 (498)
T PRK13531 123 -ILNTLLTAINERRFRNG--AH---------EEKIPMRLLVTASN--ELPE----------------------------- 159 (498)
T ss_pred -HHHHHHHHHHhCeEecC--Ce---------EEeCCCcEEEEECC--CCcc-----------------------------
Confidence 99999999986666542 11 12222223333333 1110
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcC-HHHHHHHHhchHH---H-------H-HHHHHHHHhcCCceee
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT-EDQLVKVLTEPKN---A-------L-GKQYKRLFSMNNVKLH 566 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Ls-eeeL~~Il~~~ln---~-------L-~~q~~~~~~~~gv~l~ 566 (678)
...+.++++.||-..+.+++++ +++..+|+..... . + ...+..+. ..-..+.
T Consensus 160 ---------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq-~~v~~V~ 223 (498)
T PRK13531 160 ---------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQ-KEIGKIT 223 (498)
T ss_pred ---------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHH-HHhccee
Confidence 1126667888886678888887 4555666643110 0 0 01222211 1123567
Q ss_pred eCHHHHHHHHHhhc-----C--CCCCHHHHHHHHHHHHHHHHhc
Q 005762 567 FTEKALRVIAKKAT-----A--KNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 567 ~t~eal~~La~~a~-----~--~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
+++.++++|.+... . ....-|....++.-+=..|+.+
T Consensus 224 v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~ 267 (498)
T PRK13531 224 LPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFS 267 (498)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHC
Confidence 89999999877642 1 1245677777776665566655
No 134
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.7e-12 Score=144.57 Aligned_cols=185 Identities=26% Similarity=0.356 Sum_probs=123.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
||||+.+++.|..++... . -+..+||+||+|+|||++|+++|+.+..
T Consensus 16 iiGqe~v~~~L~~~I~~g-------r-----------------------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~ 65 (535)
T PRK08451 16 LIGQESVSKTLSLALDNN-------R-----------------------LAHAYLFSGLRGSGKTSSARIFARALVCEQG 65 (535)
T ss_pred ccCcHHHHHHHHHHHHcC-------C-----------------------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCC
Confidence 899999999998887411 0 1244699999999999999999998842
Q ss_pred ---------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 352 ---------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 352 ---------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
.++.+++++- .| -..++.+.......-..+...|++|||+|.+...
T Consensus 66 ~~~~pC~~C~~C~~~~~~~h~dv~eldaas~-----~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~----- 132 (535)
T PRK08451 66 PSSTPCDTCIQCQSALENRHIDIIEMDAASN-----RG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE----- 132 (535)
T ss_pred CCCCCCcccHHHHHHhhcCCCeEEEeccccc-----cC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-----
Confidence 1333332211 11 2334454443221111234569999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||. ...++.||++++..
T Consensus 133 ---------A~NALLK~LEE---------------------pp~~t~FIL~ttd~------------------------- 157 (535)
T PRK08451 133 ---------AFNALLKTLEE---------------------PPSYVKFILATTDP------------------------- 157 (535)
T ss_pred ---------HHHHHHHHHhh---------------------cCCceEEEEEECCh-------------------------
Confidence 99999999993 11234555544310
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
..+.+.+.+|. ..+.|.+++.+++.+.+... +...| +.++++
T Consensus 158 ------------------------~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~I-----------l~~EG--i~i~~~ 199 (535)
T PRK08451 158 ------------------------LKLPATILSRT-QHFRFKQIPQNSIISHLKTI-----------LEKEG--VSYEPE 199 (535)
T ss_pred ------------------------hhCchHHHhhc-eeEEcCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 11456677775 46899999999988877642 22234 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
++++|++.+ +.+.|.+.+.++.++.
T Consensus 200 Al~~Ia~~s---~GdlR~alnlLdqai~ 224 (535)
T PRK08451 200 ALEILARSG---NGSLRDTLTLLDQAII 224 (535)
T ss_pred HHHHHHHHc---CCcHHHHHHHHHHHHH
Confidence 999999986 5667888888877653
No 135
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.4e-12 Score=145.89 Aligned_cols=184 Identities=25% Similarity=0.363 Sum_probs=120.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
|+||+.+++.|..++... . ....+||+||+|||||++|+++|+.+.+
T Consensus 18 IIGQe~iv~~L~~aI~~~-------r-----------------------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~ 67 (605)
T PRK05896 18 IIGQELIKKILVNAILNN-------K-----------------------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNP 67 (605)
T ss_pred hcCcHHHHHHHHHHHHcC-------C-----------------------CCceEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 799999999998877411 0 1245999999999999999999999853
Q ss_pred ---------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 352 ---------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 352 ---------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
.++.+++.+ ..|. ..++.+.......-..+...|++|||+|.|+..
T Consensus 68 ~~~~~Cg~C~sCr~i~~~~h~DiieIdaas-----~igV---d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~----- 134 (605)
T PRK05896 68 KDGDCCNSCSVCESINTNQSVDIVELDAAS-----NNGV---DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS----- 134 (605)
T ss_pred CCCCCCcccHHHHHHHcCCCCceEEecccc-----ccCH---HHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-----
Confidence 233333321 1122 224444433222212235679999999999765
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ..+++||++++. ..
T Consensus 135 ---------A~NaLLKtLEEP---------------------p~~tvfIL~Tt~--~~---------------------- 160 (605)
T PRK05896 135 ---------AWNALLKTLEEP---------------------PKHVVFIFATTE--FQ---------------------- 160 (605)
T ss_pred ---------HHHHHHHHHHhC---------------------CCcEEEEEECCC--hH----------------------
Confidence 899999999931 112345543321 11
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+++|+. ++.|.+++.+++...+... +...+ +.++++
T Consensus 161 -------------------------KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~i-----------l~keg--i~Is~e 201 (605)
T PRK05896 161 -------------------------KIPLTIISRCQ-RYNFKKLNNSELQELLKSI-----------AKKEK--IKIEDN 201 (605)
T ss_pred -------------------------hhhHHHHhhhh-hcccCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 13344556654 5799999999999887742 11223 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+++.|++.+ +...|.+.+.++.+.
T Consensus 202 al~~La~lS---~GdlR~AlnlLekL~ 225 (605)
T PRK05896 202 AIDKIADLA---DGSLRDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 999999986 456888888888743
No 136
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.42 E-value=3e-12 Score=141.98 Aligned_cols=218 Identities=17% Similarity=0.281 Sum_probs=141.9
Q ss_pred CCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHHH
Q 005762 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYKL 378 (678)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s----gyvG~~~~~~l~~l 378 (678)
+.++.+..+......+......++++|.+||||+++|++++... +.||+.+||..+.+. ..+|...+ .+...
T Consensus 143 g~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~-~~~~~ 221 (441)
T PRK10365 143 GKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKG-AFTGA 221 (441)
T ss_pred ecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCC-CcCCC
Confidence 45556666666666667777899999999999999999999876 469999999976521 01111100 00000
Q ss_pred HHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcce
Q 005762 379 LAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDIL 457 (678)
Q Consensus 379 ~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNil 457 (678)
.....+.+..+.+|+||||||+.|... +|..|+..++ +....+.. ...+ ..++.
T Consensus 222 ~~~~~g~~~~a~~gtl~ldei~~l~~~--------------~q~~l~~~l~~~~~~~~~~--------~~~~---~~~~r 276 (441)
T PRK10365 222 DKRREGRFVEADGGTLFLDEIGDISPM--------------MQVRLLRAIQEREVQRVGS--------NQTI---SVDVR 276 (441)
T ss_pred CcCCCCceeECCCCEEEEeccccCCHH--------------HHHHHHHHHccCcEEeCCC--------Ccee---eeceE
Confidence 011123345667899999999999987 9999999998 43332211 1111 22455
Q ss_pred EEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCH
Q 005762 458 FICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTE 536 (678)
Q Consensus 458 fI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Lse 536 (678)
+|++++. ++...+.. ..|.++|+.|+.. .+.++||.+
T Consensus 277 ii~~t~~-~~~~~~~~-----------------------------------------~~~~~~l~~~l~~~~i~~ppLre 314 (441)
T PRK10365 277 LIAATHR-DLAAEVNA-----------------------------------------GRFRQDLYYRLNVVAIEVPSLRQ 314 (441)
T ss_pred EEEeCCC-CHHHHHHc-----------------------------------------CCchHHHHHHhccceecCCChhh
Confidence 6665542 33333321 2267777777765 678888886
Q ss_pred --HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 537 --DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 537 --eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
+|+..++..+ +.++...+. .....+++++++.|..+.| ..+.|+|+++|++++..
T Consensus 315 R~~Di~~l~~~~----l~~~~~~~~--~~~~~~~~~a~~~L~~~~w--pgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 315 RREDIPLLAGHF----LQRFAERNR--KAVKGFTPQAMDLLIHYDW--PGNIRELENAVERAVVL 371 (441)
T ss_pred cchhHHHHHHHH----HHHHHHHhC--CCCCCcCHHHHHHHHhCCC--CCHHHHHHHHHHHHHHh
Confidence 5777776653 334433221 2234599999999999887 77789999999997753
No 137
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.42 E-value=3.7e-12 Score=136.06 Aligned_cols=190 Identities=26% Similarity=0.358 Sum_probs=119.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---- 350 (678)
++||+.+++.|..++.+. ...++||+||||||||++|+++++.+.
T Consensus 17 ~~g~~~~~~~L~~~~~~~-------------------------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~ 65 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSP-------------------------------NLPHLLVQGPPGSGKTAAVRALARELYGDPW 65 (337)
T ss_pred hcCCHHHHHHHHHHHhCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCccc
Confidence 689999999987776310 014799999999999999999999883
Q ss_pred -CCEEEEecccccccc--ccccc----------------hHHHHHHHHHhhchhH-hhhcCcEEEEcCccchhhhhcccc
Q 005762 351 -VPFVIADATTLTQAG--YVGED----------------VESILYKLLAQAEFNV-EAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 351 -~~fv~id~s~l~~sg--yvG~~----------------~~~~l~~l~~~a~~~v-~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
.+++.+++.++.... +...+ ....+..+........ ......+|||||+|.+...
T Consensus 66 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~----- 140 (337)
T PRK12402 66 ENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED----- 140 (337)
T ss_pred ccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----
Confidence 357888887653210 00000 0112222221111100 0124569999999998765
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.++.|+++|+.. ..+..||++++...
T Consensus 141 ---------~~~~L~~~le~~---------------------~~~~~~Il~~~~~~------------------------ 166 (337)
T PRK12402 141 ---------AQQALRRIMEQY---------------------SRTCRFIIATRQPS------------------------ 166 (337)
T ss_pred ---------HHHHHHHHHHhc---------------------cCCCeEEEEeCChh------------------------
Confidence 788899998831 01123444333110
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+.+|. ..+.|.+++.+++.+++... +...++ .++++
T Consensus 167 -------------------------~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~-----------~~~~~~--~~~~~ 207 (337)
T PRK12402 167 -------------------------KLIPPIRSRC-LPLFFRAPTDDELVDVLESI-----------AEAEGV--DYDDD 207 (337)
T ss_pred -------------------------hCchhhcCCc-eEEEecCCCHHHHHHHHHHH-----------HHHcCC--CCCHH
Confidence 0334456665 46799999999998887742 112343 48999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESI 596 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~i 596 (678)
+++.|++.+ +.+.|.+.+.++..
T Consensus 208 al~~l~~~~---~gdlr~l~~~l~~~ 230 (337)
T PRK12402 208 GLELIAYYA---GGDLRKAILTLQTA 230 (337)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHH
Confidence 999999986 56677777766653
No 138
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.42 E-value=4.6e-13 Score=151.08 Aligned_cols=210 Identities=22% Similarity=0.391 Sum_probs=145.5
Q ss_pred ChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh--CCCEEEEecccc----ccccccccchHHHHHHHHHh
Q 005762 308 EPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--NVPFVIADATTL----TQAGYVGEDVESILYKLLAQ 381 (678)
Q Consensus 308 s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l--~~~fv~id~s~l----~~sgyvG~~~~~~l~~l~~~ 381 (678)
.+....+......+.....++|+.|.|||||-.+||+|++.. ..||+.++|..+ .++.++|+..+.........
T Consensus 319 d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG 398 (606)
T COG3284 319 DPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKG 398 (606)
T ss_pred CHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhcc
Confidence 344555556666777778999999999999999999999877 469999999854 44556666633322222233
Q ss_pred hchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEe
Q 005762 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFIC 460 (678)
Q Consensus 382 a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~ 460 (678)
..+.++.+.++.+|+|||..|.-. .|..||++|+ |.++.+ |..+ +.|| |-+|+
T Consensus 399 ~~g~~~~A~gGtlFldeIgd~p~~--------------~Qs~LLrVl~e~~v~p~---g~~~------~~vd---irvi~ 452 (606)
T COG3284 399 YKGKLEQADGGTLFLDEIGDMPLA--------------LQSRLLRVLQEGVVTPL---GGTR------IKVD---IRVIA 452 (606)
T ss_pred ccccceecCCCccHHHHhhhchHH--------------HHHHHHHHHhhCceecc---CCcc------eeEE---EEEEe
Confidence 456678889999999999999876 9999999998 666554 2221 2333 23444
Q ss_pred cCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCHH-H
Q 005762 461 GGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTED-Q 538 (678)
Q Consensus 461 tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~Lsee-e 538 (678)
+ +..+|...++++. |...|+.|+.. .|.++||.+. |
T Consensus 453 a-th~dl~~lv~~g~-----------------------------------------fredLyyrL~~~~i~lP~lr~R~d 490 (606)
T COG3284 453 A-THRDLAQLVEQGR-----------------------------------------FREDLYYRLNAFVITLPPLRERSD 490 (606)
T ss_pred c-cCcCHHHHHHcCC-----------------------------------------chHHHHHHhcCeeeccCchhcccc
Confidence 3 3356777776554 55566667765 6888888762 2
Q ss_pred HHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 539 LVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 539 L~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
..-.+. +|.+. .....+.++++++..|..+.| ..+.|+|.++|+.+.
T Consensus 491 ~~~~l~--------~~~~~--~~~~~~~l~~~~~~~l~~~~W--PGNirel~~v~~~~~ 537 (606)
T COG3284 491 RIPLLD--------RILKR--ENDWRLQLDDDALARLLAYRW--PGNIRELDNVIERLA 537 (606)
T ss_pred cHHHHH--------HHHHH--ccCCCccCCHHHHHHHHhCCC--CCcHHHHHHHHHHHH
Confidence 222222 11111 223668899999999999776 777899999999866
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.2e-12 Score=145.64 Aligned_cols=184 Identities=21% Similarity=0.333 Sum_probs=120.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
|+||+.+++.|..++.+. + .+..+||+||+|+|||++|+++|+.++..
T Consensus 18 iiGqe~iv~~L~~~i~~~--~----------------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~ 67 (563)
T PRK06647 18 LEGQDFVVETLKHSIESN--K----------------------------IANAYIFSGPRGVGKTSSARAFARCLNCVNG 67 (563)
T ss_pred ccCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHhhccccC
Confidence 899999999998887521 0 12459999999999999999999998642
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
++.+++..- .+ -..++.+.......-..+...|++|||+|.++..
T Consensus 68 ~~~~pC~~C~~C~~i~~~~~~dv~~idgas~-----~~---vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~----- 134 (563)
T PRK06647 68 PTPMPCGECSSCKSIDNDNSLDVIEIDGASN-----TS---VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS----- 134 (563)
T ss_pred CCCCCCccchHHHHHHcCCCCCeEEecCccc-----CC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH-----
Confidence 222222110 01 1233444433222212345679999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ..+++||++++ ++.+
T Consensus 135 ---------a~naLLK~LEep---------------------p~~~vfI~~tt--e~~k--------------------- 161 (563)
T PRK06647 135 ---------AFNALLKTIEEP---------------------PPYIVFIFATT--EVHK--------------------- 161 (563)
T ss_pred ---------HHHHHHHhhccC---------------------CCCEEEEEecC--ChHH---------------------
Confidence 899999999830 12345665442 1111
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+.+.+.+|+. .+.|.+++.+++.+++... +...+ +.++++
T Consensus 162 --------------------------L~~tI~SRc~-~~~f~~l~~~el~~~L~~i-----------~~~eg--i~id~e 201 (563)
T PRK06647 162 --------------------------LPATIKSRCQ-HFNFRLLSLEKIYNMLKKV-----------CLEDQ--IKYEDE 201 (563)
T ss_pred --------------------------hHHHHHHhce-EEEecCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 2334455554 5789999999998877641 11223 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++.+|++.+ ....|.+.+.++.++
T Consensus 202 Al~lLa~~s---~GdlR~alslLdkli 225 (563)
T PRK06647 202 ALKWIAYKS---TGSVRDAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999985 456888888887754
No 140
>PRK04195 replication factor C large subunit; Provisional
Probab=99.41 E-value=4.2e-12 Score=143.57 Aligned_cols=110 Identities=28% Similarity=0.431 Sum_probs=77.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+||+.+++.|...+..+. .+ .+..++||+||||||||++|+++|+.++.+++
T Consensus 16 lvg~~~~~~~l~~~l~~~~-----~g----------------------~~~~~lLL~GppG~GKTtla~ala~el~~~~i 68 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWL-----KG----------------------KPKKALLLYGPPGVGKTSLAHALANDYGWEVI 68 (482)
T ss_pred hcCCHHHHHHHHHHHHHHh-----cC----------------------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 8999999999988885331 00 01478999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhch--hHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEF--NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~--~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.+++++... ...+..+...... .+......||+|||+|.+.... ..+.+++|+++++
T Consensus 69 elnasd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~ 127 (482)
T PRK04195 69 ELNASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIK 127 (482)
T ss_pred EEccccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHH
Confidence 999987542 1223332222111 0111246799999999986521 1126788899887
No 141
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=5e-12 Score=147.11 Aligned_cols=189 Identities=24% Similarity=0.354 Sum_probs=122.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+||+.+++.|..++... + ....+||+||+|||||++|+++|+.+.+.-.
T Consensus 20 IiGQe~~v~~L~~aI~~~--r----------------------------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~ 69 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKSN--K----------------------------ISHAYLFSGPRGTGKTSVAKIFANALNCSHK 69 (725)
T ss_pred hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCcHHHHHHHHHHHhccccc
Confidence 899999999998888521 0 1245799999999999999999999865311
Q ss_pred EE---ecc----------ccc---cccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 355 IA---DAT----------TLT---QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 355 ~i---d~s----------~l~---~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
.. .|. ++. .++..| ...++.+.......-..+...|++|||+|.|...
T Consensus 70 ~~~~~pC~~C~~~~~~~~Dvieidaasn~~---vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~------------- 133 (725)
T PRK07133 70 TDLLEPCQECIENVNNSLDIIEMDAASNNG---VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS------------- 133 (725)
T ss_pred CCCCCchhHHHHhhcCCCcEEEEeccccCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------
Confidence 00 000 000 001111 2234455444332222345679999999999876
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
.+++||+.||.- ...++||++++. .+
T Consensus 134 -A~NALLKtLEEP---------------------P~~tifILaTte--~~------------------------------ 159 (725)
T PRK07133 134 -AFNALLKTLEEP---------------------PKHVIFILATTE--VH------------------------------ 159 (725)
T ss_pred -HHHHHHHHhhcC---------------------CCceEEEEEcCC--hh------------------------------
Confidence 899999999931 123355554431 11
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
.+.+.+++|+. .+.|.+++.+++.+++... +...+ +.+++++++.|+..
T Consensus 160 -----------------KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~i-----------l~keg--I~id~eAl~~LA~l 208 (725)
T PRK07133 160 -----------------KIPLTILSRVQ-RFNFRRISEDEIVSRLEFI-----------LEKEN--ISYEKNALKLIAKL 208 (725)
T ss_pred -----------------hhhHHHHhhce-eEEccCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHH
Confidence 13445666764 6899999999999887741 11223 55889999999998
Q ss_pred hcCCCCCHHHHHHHHHHHH
Q 005762 579 ATAKNTGARGLRAILESIL 597 (678)
Q Consensus 579 a~~~~~GAR~Lr~iIE~il 597 (678)
+ +.+.|.+.++++.+.
T Consensus 209 S---~GslR~AlslLekl~ 224 (725)
T PRK07133 209 S---SGSLRDALSIAEQVS 224 (725)
T ss_pred c---CCCHHHHHHHHHHHH
Confidence 6 566788878777654
No 142
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=5.6e-12 Score=141.37 Aligned_cols=184 Identities=22% Similarity=0.321 Sum_probs=120.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
||||+.+++.|..++... + .+..+||+||+|+|||++|+++|+.+...
T Consensus 19 iiGq~~~v~~L~~~i~~~--~----------------------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~ 68 (451)
T PRK06305 19 ILGQDAVVAVLKNALRFN--R----------------------------AAHAYLFSGIRGTGKTTLARIFAKALNCQNP 68 (451)
T ss_pred hcCcHHHHHHHHHHHHcC--C----------------------------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCc
Confidence 899999999888777411 0 12458999999999999999999988542
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccc
Q 005762 353 -----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESL 409 (678)
Q Consensus 353 -----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~ 409 (678)
++.++.. ...|. ..++.+.......-..+...||||||+|.+...
T Consensus 69 ~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~-----~~~gi---d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~---- 136 (451)
T PRK06305 69 TEDQEPCNQCASCKEISSGTSLDVLEIDGA-----SHRGI---EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE---- 136 (451)
T ss_pred ccCCCCCcccHHHHHHhcCCCCceEEeecc-----ccCCH---HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH----
Confidence 2222221 11221 223333322222112246679999999999876
Q ss_pred cccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccc
Q 005762 410 NISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRAN 489 (678)
Q Consensus 410 ~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~ 489 (678)
.++.|++.||.. ..+++||++++. ..
T Consensus 137 ----------~~n~LLk~lEep---------------------~~~~~~Il~t~~--~~--------------------- 162 (451)
T PRK06305 137 ----------AFNSLLKTLEEP---------------------PQHVKFFLATTE--IH--------------------- 162 (451)
T ss_pred ----------HHHHHHHHhhcC---------------------CCCceEEEEeCC--hH---------------------
Confidence 899999999831 113345554321 00
Q ss_pred cccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCH
Q 005762 490 MRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569 (678)
Q Consensus 490 ~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ 569 (678)
.+.+.+.+|+. ++.|.+++++++.+.+... ++..+ +.+++
T Consensus 163 --------------------------kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~-----------~~~eg--~~i~~ 202 (451)
T PRK06305 163 --------------------------KIPGTILSRCQ-KMHLKRIPEETIIDKLALI-----------AKQEG--IETSR 202 (451)
T ss_pred --------------------------hcchHHHHhce-EEeCCCCCHHHHHHHHHHH-----------HHHcC--CCCCH
Confidence 14445566664 5799999999999887641 11223 44899
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 570 KALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 570 eal~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++++.|+..+ +.+.|.+.+.++.+.
T Consensus 203 ~al~~L~~~s---~gdlr~a~~~Lekl~ 227 (451)
T PRK06305 203 EALLPIARAA---QGSLRDAESLYDYVV 227 (451)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 9999999986 566787877777754
No 143
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.5e-12 Score=150.98 Aligned_cols=218 Identities=23% Similarity=0.317 Sum_probs=150.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccc-ccCCcEEEEcCCCcHHHHHHHHHHHHh----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVE-LEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~-~~~~~iLL~GPpGtGKT~LAralA~~l---- 349 (678)
|-|.+.++..|.+.|...|.....- .++. -+++++||+||||||||++|+++|..+
T Consensus 267 vggl~~~i~~LKEmVl~PLlyPE~f-------------------~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~ 327 (1080)
T KOG0732|consen 267 VGGLENYINQLKEMVLLPLLYPEFF-------------------DNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN 327 (1080)
T ss_pred cccHHHHHHHHHHHHHhHhhhhhHh-------------------hhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc
Confidence 8999999999999998665432110 0111 146789999999999999999999988
Q ss_pred -CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHH
Q 005762 350 -NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (678)
Q Consensus 350 -~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~L 428 (678)
+..|+.-+..+.. +.|+|+. +..++-+|+++... ++.|||+||||-|++.+.+-.-. -...+...||.+|
T Consensus 328 ~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEq---ih~SIvSTLLaLm 398 (1080)
T KOG0732|consen 328 RKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQ---IHASIVSTLLALM 398 (1080)
T ss_pred cccchhhhcCchhh-ccccCcH-HHHHHHHHHHHhcc----CceEEeccccccccccccchHHH---hhhhHHHHHHHhc
Confidence 3455555555555 5799998 88999999987654 88999999999999876442211 1224888999999
Q ss_pred hcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcc
Q 005762 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (678)
Q Consensus 429 Eg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~ 508 (678)
+|--. ++..+++.++|. .+
T Consensus 399 dGlds-----------RgqVvvigATnR--------pd------------------------------------------ 417 (1080)
T KOG0732|consen 399 DGLDS-----------RGQVVVIGATNR--------PD------------------------------------------ 417 (1080)
T ss_pred cCCCC-----------CCceEEEcccCC--------cc------------------------------------------
Confidence 97211 223333333332 11
Q ss_pred hhhhhhhcCCccc--ccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCH
Q 005762 509 SSDLIAYGLIPEF--VGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGA 586 (678)
Q Consensus 509 ~edLi~~g~~Pef--l~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GA 586 (678)
.+.|+| .+|||..+.|+-.+.++..+|+... ..+-.-.++...+..|++.. .+++.
T Consensus 418 -------a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ih-------------trkw~~~i~~~l~~~la~~t--~gy~g 475 (1080)
T KOG0732|consen 418 -------AIDPALRRPGRFDREFYFPLPDVDARAKILDIH-------------TRKWEPPISRELLLWLAEET--SGYGG 475 (1080)
T ss_pred -------ccchhhcCCcccceeEeeeCCchHHHHHHHHHh-------------ccCCCCCCCHHHHHHHHHhc--cccch
Confidence 034444 5899999999999999999988742 12333457778888888864 35555
Q ss_pred HHHHHHHHHHHHHHHhc
Q 005762 587 RGLRAILESILTEAMYE 603 (678)
Q Consensus 587 R~Lr~iIE~il~~a~~~ 603 (678)
..|+.+.....+.++..
T Consensus 476 aDlkaLCTeAal~~~~r 492 (1080)
T KOG0732|consen 476 ADLKALCTEAALIALRR 492 (1080)
T ss_pred HHHHHHHHHHhhhhhcc
Confidence 55777776666666543
No 144
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.40 E-value=2e-12 Score=155.22 Aligned_cols=191 Identities=23% Similarity=0.308 Sum_probs=130.6
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.|+. |+|+++.++.+.+.+.+. .+.+++|+||||||||++|+.+|+.+
T Consensus 171 ~~~~-~igr~~ei~~~~~~l~r~-------------------------------~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 171 KLDP-VIGRDEEIRRTIQVLSRR-------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCc-CCCcHHHHHHHHHHHhcC-------------------------------CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4554 899999988888777521 24799999999999999999999876
Q ss_pred ----------CCCEEEEeccccc-cccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 350 ----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 350 ----------~~~fv~id~s~l~-~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
+.+++.++++.+. ...|.|+. +..+..++..... ...+.||||||||.+.....+ ..+.
T Consensus 219 ~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~---~~~~~ILfIDEih~l~~~g~~------~~~~ 288 (852)
T TIGR03346 219 VNGDVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTK---SEGQIILFIDELHTLVGAGKA------EGAM 288 (852)
T ss_pred hccCCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHh---cCCCeEEEeccHHHhhcCCCC------cchh
Confidence 5688899988765 23566654 6677777765421 124689999999999764211 1123
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
++++.|+.+++. ..+.+|.+++..+..+.+
T Consensus 289 d~~~~Lk~~l~~-----------------------g~i~~IgaTt~~e~r~~~--------------------------- 318 (852)
T TIGR03346 289 DAGNMLKPALAR-----------------------GELHCIGATTLDEYRKYI--------------------------- 318 (852)
T ss_pred HHHHHhchhhhc-----------------------CceEEEEeCcHHHHHHHh---------------------------
Confidence 477777777651 234556655533211111
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
...|+|.+||.. |.+..++.++..+|+.. +..+|.. ...+.++++++..++..
T Consensus 319 -----------------~~d~al~rRf~~-i~v~~p~~~~~~~iL~~----~~~~~e~-----~~~v~~~d~~i~~~~~l 371 (852)
T TIGR03346 319 -----------------EKDAALERRFQP-VFVDEPTVEDTISILRG----LKERYEV-----HHGVRITDPAIVAAATL 371 (852)
T ss_pred -----------------hcCHHHHhcCCE-EEeCCCCHHHHHHHHHH----HHHHhcc-----ccCCCCCHHHHHHHHHh
Confidence 157888999976 57888899999998874 4444432 34566888888888866
Q ss_pred h
Q 005762 579 A 579 (678)
Q Consensus 579 a 579 (678)
+
T Consensus 372 s 372 (852)
T TIGR03346 372 S 372 (852)
T ss_pred c
Confidence 4
No 145
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.4e-12 Score=137.00 Aligned_cols=196 Identities=23% Similarity=0.338 Sum_probs=132.0
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchh
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 403 (678)
+-+|||||||||||||+.|+-||+..+..+..+...++... |......+.++|.=+.. ...+-+|||||+|.+.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl---G~qaVTkiH~lFDWakk---S~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL---GAQAVTKIHKLFDWAKK---SRRGLLLFIDEADAFL 456 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc---chHHHHHHHHHHHHHhh---cccceEEEehhhHHHH
Confidence 34799999999999999999999999999999999998764 33434556677754332 2345589999999999
Q ss_pred hhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCC-cCHHHHHHhhcccCCCCc
Q 005762 404 KKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF-VDLEKTISERRQDSSIGF 482 (678)
Q Consensus 404 ~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf-~~Le~~i~~r~~~~~igF 482 (678)
.++.... .+++...+|-.+|-. . | + -..+|++++++|- .+
T Consensus 457 ceRnkty-----mSEaqRsaLNAlLfR----T---G----d-------qSrdivLvlAtNrpgd---------------- 497 (630)
T KOG0742|consen 457 CERNKTY-----MSEAQRSALNALLFR----T---G----D-------QSRDIVLVLATNRPGD---------------- 497 (630)
T ss_pred HHhchhh-----hcHHHHHHHHHHHHH----h---c----c-------cccceEEEeccCCccc----------------
Confidence 8865432 233344444444431 0 0 0 1123445554442 22
Q ss_pred CcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHH---------H
Q 005762 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGK---------Q 553 (678)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~---------q 553 (678)
|.-..-.|||.+|+|+-+.++|..++|..++|..+. .
T Consensus 498 ----------------------------------lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~ 543 (630)
T KOG0742|consen 498 ----------------------------------LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGK 543 (630)
T ss_pred ----------------------------------hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCch
Confidence 233345789999999999999999999988776652 4
Q ss_pred HHHHHhcCCceeee----CHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 005762 554 YKRLFSMNNVKLHF----TEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (678)
Q Consensus 554 ~~~~~~~~gv~l~~----t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a 600 (678)
+..+|+....+|.+ ++..+...+++. .++..|+|..++-..-..+
T Consensus 544 ~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkT--eGfSGREiakLva~vQAav 592 (630)
T KOG0742|consen 544 WSHLFKKESQRIKLAGFDTGRKCSEAAKKT--EGFSGREIAKLVASVQAAV 592 (630)
T ss_pred hhHHHhhhhheeeeccchHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHH
Confidence 55566655556655 445555666654 5777899988877654433
No 146
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=9.4e-12 Score=140.60 Aligned_cols=184 Identities=28% Similarity=0.408 Sum_probs=117.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
|+||+.+++.|..++.+. + ....+||+||+|+|||++|+.+|+.+++
T Consensus 18 iiGq~~i~~~L~~~i~~~--~----------------------------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~ 67 (486)
T PRK14953 18 VIGQEIVVRILKNAVKLQ--R----------------------------VSHAYIFAGPRGTGKTTIARILAKVLNCLNP 67 (486)
T ss_pred ccChHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCC
Confidence 899999999998887521 0 0134789999999999999999999863
Q ss_pred ---------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 352 ---------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 352 ---------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
.++.+|++. -.|.+ .++.+.......-..+...|++|||+|.++..
T Consensus 68 ~~~~pc~~c~nc~~i~~g~~~d~~eidaas-----~~gvd---~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~----- 134 (486)
T PRK14953 68 QEGEPCGKCENCVEIDKGSFPDLIEIDAAS-----NRGID---DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE----- 134 (486)
T ss_pred CCCCCCCccHHHHHHhcCCCCcEEEEeCcc-----CCCHH---HHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-----
Confidence 122222211 11222 23333322222112245679999999999776
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ..+++||++++ ++++
T Consensus 135 ---------a~naLLk~LEep---------------------p~~~v~Il~tt--~~~k--------------------- 161 (486)
T PRK14953 135 ---------AFNALLKTLEEP---------------------PPRTIFILCTT--EYDK--------------------- 161 (486)
T ss_pred ---------HHHHHHHHHhcC---------------------CCCeEEEEEEC--CHHH---------------------
Confidence 889999999831 11224444332 1111
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+.+.+.+|+. .+.|.+++.+++..++... ++..+ +.++++
T Consensus 162 --------------------------l~~tI~SRc~-~i~f~~ls~~el~~~L~~i-----------~k~eg--i~id~~ 201 (486)
T PRK14953 162 --------------------------IPPTILSRCQ-RFIFSKPTKEQIKEYLKRI-----------CNEEK--IEYEEK 201 (486)
T ss_pred --------------------------HHHHHHHhce-EEEcCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 1223344443 5899999999998887641 12234 468999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++..|+..+ +.+.|.+.+.++.++
T Consensus 202 al~~La~~s---~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 202 ALDLLAQAS---EGGMRDAASLLDQAS 225 (486)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999985 566888888888765
No 147
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=8.4e-12 Score=144.19 Aligned_cols=192 Identities=20% Similarity=0.314 Sum_probs=117.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+||+.+++.|..++.+. + -...+||+||+|||||++|+++|+.+++.-.
T Consensus 18 ivGQe~i~~~L~~~i~~~--r----------------------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~ 67 (620)
T PRK14954 18 ITAQEHITHTIQNSLRMD--R----------------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRM 67 (620)
T ss_pred hcCcHHHHHHHHHHHHcC--C----------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCc
Confidence 799999999988877411 0 0245999999999999999999999976210
Q ss_pred E----------Eecc------ccc---ccc---ccccc--hHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 355 I----------ADAT------TLT---QAG---YVGED--VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 355 ~----------id~s------~l~---~sg---yvG~~--~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
. -.|. .+. ... +.|.+ ....++.+.......-..+..-||+|||+|.+...
T Consensus 68 ~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~----- 142 (620)
T PRK14954 68 IDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA----- 142 (620)
T ss_pred CCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-----
Confidence 0 0010 000 000 01100 02334444433321112245569999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+++||+.||.- ....+||++++ +..+
T Consensus 143 ---------a~naLLK~LEeP---------------------p~~tv~IL~t~--~~~k--------------------- 169 (620)
T PRK14954 143 ---------AFNAFLKTLEEP---------------------PPHAIFIFATT--ELHK--------------------- 169 (620)
T ss_pred ---------HHHHHHHHHhCC---------------------CCCeEEEEEeC--Chhh---------------------
Confidence 899999999931 01223444322 1111
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+.+.+.+|. .++.|.+++++++...+... +...+ +.++++
T Consensus 170 --------------------------Ll~TI~SRc-~~vef~~l~~~ei~~~L~~i-----------~~~eg--i~I~~e 209 (620)
T PRK14954 170 --------------------------IPATIASRC-QRFNFKRIPLDEIQSQLQMI-----------CRAEG--IQIDAD 209 (620)
T ss_pred --------------------------hhHHHHhhc-eEEecCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 222333444 36899999999988876531 11223 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
++++|++.+ +.+.|.+.+.+++++
T Consensus 210 al~~La~~s---~Gdlr~al~eLeKL~ 233 (620)
T PRK14954 210 ALQLIARKA---QGSMRDAQSILDQVI 233 (620)
T ss_pred HHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 999999986 566788877777654
No 148
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.39 E-value=1e-11 Score=133.98 Aligned_cols=185 Identities=24% Similarity=0.402 Sum_probs=118.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
|+||+.+++.|..++.+. . .+..+||+||||+|||++|+++|+.+...
T Consensus 16 iig~~~~~~~l~~~~~~~-------~-----------------------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~ 65 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKNG-------R-----------------------IAHAYLFSGPRGTGKTSIARIFAKALNCQNG 65 (355)
T ss_pred ccCcHHHHHHHHHHHHcC-------C-----------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 799999999998877411 0 12468999999999999999999998532
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
++.++.... .. ...+..++......-..+...||+|||+|.+...
T Consensus 66 ~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~----- 132 (355)
T TIGR02397 66 PDGEPCNECESCKEINSGSSLDVIEIDAASN-------NG-VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS----- 132 (355)
T ss_pred CCCCCCCCCHHHHHHhcCCCCCEEEeecccc-------CC-HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH-----
Confidence 222322210 01 2234444444322212235569999999998765
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.++.|++.||.. ..+++||++++ ++++
T Consensus 133 ---------~~~~Ll~~le~~---------------------~~~~~lIl~~~--~~~~--------------------- 159 (355)
T TIGR02397 133 ---------AFNALLKTLEEP---------------------PEHVVFILATT--EPHK--------------------- 159 (355)
T ss_pred ---------HHHHHHHHHhCC---------------------ccceeEEEEeC--CHHH---------------------
Confidence 889999999831 11234454432 1111
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+.+.+.+|+ ..+.|.+++++++.+++... ++..+ +.++++
T Consensus 160 --------------------------l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~-----------~~~~g--~~i~~~ 199 (355)
T TIGR02397 160 --------------------------IPATILSRC-QRFDFKRIPLEDIVERLKKI-----------LDKEG--IKIEDE 199 (355)
T ss_pred --------------------------HHHHHHhhe-eEEEcCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 122334454 35799999999999887742 11223 458899
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
++..|++.+ +.+.|.+.+.+++...
T Consensus 200 a~~~l~~~~---~g~~~~a~~~lekl~~ 224 (355)
T TIGR02397 200 ALELIARAA---DGSLRDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHc---CCChHHHHHHHHHHHh
Confidence 999999975 4566777777776553
No 149
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=5.9e-12 Score=137.22 Aligned_cols=189 Identities=25% Similarity=0.359 Sum_probs=120.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+||+.+++.+...+.+. ..+.++||+||||+|||++|+++|+.+..+..
T Consensus 19 iig~~~~~~~l~~~i~~~------------------------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~ 68 (367)
T PRK14970 19 VVGQSHITNTLLNAIENN------------------------------HLAQALLFCGPRGVGKTTCARILARKINQPGY 68 (367)
T ss_pred cCCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 799999999888877411 01358999999999999999999998854221
Q ss_pred EEec-------cccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHH
Q 005762 355 IADA-------TTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (678)
Q Consensus 355 ~id~-------s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~ 427 (678)
...+ .++..... .. ...+..++..+...-..+...||||||+|.+... .++.|++.
T Consensus 69 ~~~~~~~~~~~~~l~~~~~--~~-~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll~~ 131 (367)
T PRK14970 69 DDPNEDFSFNIFELDAASN--NS-VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFLKT 131 (367)
T ss_pred CCCCCCCCcceEEeccccC--CC-HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHHHH
Confidence 1100 01111111 11 2344555543321111234569999999998765 78999999
Q ss_pred HhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhc
Q 005762 428 LEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (678)
Q Consensus 428 LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v 507 (678)
||.. ..+.+||++++..
T Consensus 132 le~~---------------------~~~~~~Il~~~~~------------------------------------------ 148 (367)
T PRK14970 132 LEEP---------------------PAHAIFILATTEK------------------------------------------ 148 (367)
T ss_pred HhCC---------------------CCceEEEEEeCCc------------------------------------------
Confidence 9831 1122444433210
Q ss_pred chhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHH
Q 005762 508 ESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGAR 587 (678)
Q Consensus 508 ~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR 587 (678)
..+.+.+.+|+. ++.|.+++++++..++... +...+ +.+++++++.|+..+ +.+.|
T Consensus 149 -------~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~-----------~~~~g--~~i~~~al~~l~~~~---~gdlr 204 (367)
T PRK14970 149 -------HKIIPTILSRCQ-IFDFKRITIKDIKEHLAGI-----------AVKEG--IKFEDDALHIIAQKA---DGALR 204 (367)
T ss_pred -------ccCCHHHHhcce-eEecCCccHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHhC---CCCHH
Confidence 014445556654 5799999999998887742 11224 458999999999985 56788
Q ss_pred HHHHHHHHHH
Q 005762 588 GLRAILESIL 597 (678)
Q Consensus 588 ~Lr~iIE~il 597 (678)
.+.+.+++++
T Consensus 205 ~~~~~lekl~ 214 (367)
T PRK14970 205 DALSIFDRVV 214 (367)
T ss_pred HHHHHHHHHH
Confidence 8888888766
No 150
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.6e-12 Score=144.53 Aligned_cols=183 Identities=24% Similarity=0.413 Sum_probs=120.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
|+||+.+++.|..++... + -..++||+||+|||||++|+++|+.+++.
T Consensus 18 liGq~~i~~~L~~~l~~~--r----------------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~ 67 (620)
T PRK14948 18 LVGQEAIATTLKNALISN--R----------------------------IAPAYLFTGPRGTGKTSSARILAKSLNCLNS 67 (620)
T ss_pred ccChHHHHHHHHHHHHcC--C----------------------------CCceEEEECCCCCChHHHHHHHHHHhcCCCc
Confidence 899999999998887521 0 02579999999999999999999998652
Q ss_pred ------------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcc
Q 005762 353 ------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAES 408 (678)
Q Consensus 353 ------------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~ 408 (678)
++.++... ... ...+++++..+...-..+...||||||+|.|...
T Consensus 68 ~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~-------~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~--- 136 (620)
T PRK14948 68 DKPTPEPCGKCELCRAIAAGNALDVIEIDAAS-------NTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA--- 136 (620)
T ss_pred CCCCCCCCcccHHHHHHhcCCCccEEEEeccc-------cCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH---
Confidence 22222210 111 2345555544432212235569999999999876
Q ss_pred ccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccc
Q 005762 409 LNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRA 488 (678)
Q Consensus 409 ~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~ 488 (678)
.+++||+.||.- ..+++||++++. ..
T Consensus 137 -----------a~naLLK~LEeP---------------------p~~tvfIL~t~~--~~-------------------- 162 (620)
T PRK14948 137 -----------AFNALLKTLEEP---------------------PPRVVFVLATTD--PQ-------------------- 162 (620)
T ss_pred -----------HHHHHHHHHhcC---------------------CcCeEEEEEeCC--hh--------------------
Confidence 899999999931 112355554331 10
Q ss_pred ccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeC
Q 005762 489 NMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFT 568 (678)
Q Consensus 489 ~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t 568 (678)
.+.|.+++|+. .+.|.+++.+++.+.+.. +. ...+ +.++
T Consensus 163 ---------------------------~llpTIrSRc~-~~~f~~l~~~ei~~~L~~----ia-------~keg--i~is 201 (620)
T PRK14948 163 ---------------------------RVLPTIISRCQ-RFDFRRIPLEAMVQHLSE----IA-------EKES--IEIE 201 (620)
T ss_pred ---------------------------hhhHHHHhhee-EEEecCCCHHHHHHHHHH----HH-------HHhC--CCCC
Confidence 13445556653 578999999888876653 11 1123 4488
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005762 569 EKALRVIAKKATAKNTGARGLRAILESI 596 (678)
Q Consensus 569 ~eal~~La~~a~~~~~GAR~Lr~iIE~i 596 (678)
++++..|++.+ +.+.|.+.+.++.+
T Consensus 202 ~~al~~La~~s---~G~lr~A~~lLekl 226 (620)
T PRK14948 202 PEALTLVAQRS---QGGLRDAESLLDQL 226 (620)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 99999999986 56677777777764
No 151
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.38 E-value=2.1e-12 Score=130.35 Aligned_cols=235 Identities=23% Similarity=0.341 Sum_probs=147.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-C---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV-N--- 350 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l-~--- 350 (678)
+||.++.++.|....... --.|++|.|||||||||-+.++|+.+ |
T Consensus 29 IVGNe~tv~rl~via~~g-------------------------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ 77 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIAKEG-------------------------------NMPNLIISGPPGTGKTTSILCLARELLGDSY 77 (333)
T ss_pred hhCCHHHHHHHHHHHHcC-------------------------------CCCceEeeCCCCCchhhHHHHHHHHHhChhh
Confidence 899999999987765310 12689999999999999999999988 2
Q ss_pred -CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 351 -VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 351 -~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.-+.++++++ -.|.++...--+.|.+....+......||+|||+|.++.. +|++|.+.||
T Consensus 78 ke~vLELNASd-----eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRtME 138 (333)
T KOG0991|consen 78 KEAVLELNASD-----ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRTME 138 (333)
T ss_pred hhHhhhccCcc-----ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHHHH
Confidence 2456677765 3466766666677877665555567789999999999875 9999999999
Q ss_pred cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccccc-CCCchHhHHHHHhhcc
Q 005762 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA-GVTDAAVTSSLLESVE 508 (678)
Q Consensus 430 g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~-~~~~~~~~~~ll~~v~ 508 (678)
= .-.++.+.++|... .-+-+-|..|+ +.+|. .+++.++...|++-++
T Consensus 139 i-------------------yS~ttRFalaCN~s-~KIiEPIQSRC------------AiLRysklsd~qiL~Rl~~v~k 186 (333)
T KOG0991|consen 139 I-------------------YSNTTRFALACNQS-EKIIEPIQSRC------------AILRYSKLSDQQILKRLLEVAK 186 (333)
T ss_pred H-------------------Hcccchhhhhhcch-hhhhhhHHhhh------------HhhhhcccCHHHHHHHHHHHHH
Confidence 1 12344555555322 22222233333 22232 5566677777777666
Q ss_pred hhhhh--hhcC----------Ccccccccce-EEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHH
Q 005762 509 SSDLI--AYGL----------IPEFVGRFPI-LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVI 575 (678)
Q Consensus 509 ~edLi--~~g~----------~Pefl~R~~~-iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~L 575 (678)
.|.+- ..|+ ...-++-+.. +-.|.-.+.|.+.+|+.+|...+++..-..+...++ ++|++.|
T Consensus 187 ~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~-----~~A~~il 261 (333)
T KOG0991|consen 187 AEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNI-----DEALKIL 261 (333)
T ss_pred HhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhccH-----HHHHHHH
Confidence 54420 1111 0011111111 334555677788888888777777666554444443 3677777
Q ss_pred HHhhcCCCCCHHHHHHHHHHHH
Q 005762 576 AKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 576 a~~a~~~~~GAR~Lr~iIE~il 597 (678)
++. |..++..-.+-..+-+++
T Consensus 262 ~~l-w~lgysp~Dii~~~FRv~ 282 (333)
T KOG0991|consen 262 AEL-WKLGYSPEDIITTLFRVV 282 (333)
T ss_pred HHH-HHcCCCHHHHHHHHHHHH
Confidence 764 777777665555444444
No 152
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=3.6e-12 Score=140.44 Aligned_cols=113 Identities=22% Similarity=0.316 Sum_probs=72.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccc-cCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVEL-EKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~-~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
|+||+.+++.|..++....... ..... .+..+||+||+|+|||++|+.+|+.+.+..
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~----------------------~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADV----------------------AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred ccChHHHHHHHHHHHHhccccc----------------------cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 8999999999999986321000 00000 135699999999999999999999885431
Q ss_pred -----------------------EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 354 -----------------------VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 354 -----------------------v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
..+.... ...+ ...+++++......-..+...|+||||+|++...
T Consensus 65 ~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~----~~i~---i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~----- 132 (394)
T PRK07940 65 PDEPGCGECRACRTVLAGTHPDVRVVAPEG----LSIG---VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER----- 132 (394)
T ss_pred CCCCCCCCCHHHHHHhcCCCCCEEEecccc----ccCC---HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----
Confidence 1111110 0011 2335555554432212235569999999999876
Q ss_pred ccCCCchhHHHHHHHHHHhc
Q 005762 411 ISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg 430 (678)
.++.||+.||.
T Consensus 133 ---------aanaLLk~LEe 143 (394)
T PRK07940 133 ---------AANALLKAVEE 143 (394)
T ss_pred ---------HHHHHHHHhhc
Confidence 88999999983
No 153
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.37 E-value=6.4e-12 Score=126.89 Aligned_cols=166 Identities=18% Similarity=0.274 Sum_probs=108.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 401 (678)
..+++|+||+|||||++|+++++.+ +.+++.++|..+... ....+... ....+|||||+|.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~------~~~~lLvIDdi~~ 101 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA----------DPEVLEGL------EQADLVCLDDVEA 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh----------HHHHHhhc------ccCCEEEEeChhh
Confidence 3689999999999999999999887 468888999877521 01222111 1236999999999
Q ss_pred hhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCC
Q 005762 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (678)
Q Consensus 402 l~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ig 481 (678)
+.... ..++.|+.+++.... .+..+|++++... .+
T Consensus 102 l~~~~------------~~~~~L~~~l~~~~~--------------------~~~~iIits~~~~-~~------------ 136 (226)
T TIGR03420 102 IAGQP------------EWQEALFHLYNRVRE--------------------AGGRLLIAGRAAP-AQ------------ 136 (226)
T ss_pred hcCCh------------HHHHHHHHHHHHHHH--------------------cCCeEEEECCCCh-HH------------
Confidence 86530 136677777652100 0113444444210 00
Q ss_pred cCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHHh
Q 005762 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFS 559 (678)
Q Consensus 482 F~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~ 559 (678)
+ ....+.|.+|+. ..+.+++|+++++..++... ..
T Consensus 137 ------------------------------~--~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~--------~~--- 173 (226)
T TIGR03420 137 ------------------------------L--PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR--------AA--- 173 (226)
T ss_pred ------------------------------C--CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH--------HH---
Confidence 0 001244555653 57899999999998887531 11
Q ss_pred cCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 560 MNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 560 ~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
...+.+++++++.|++. | ..+.|.|+++++.+-..
T Consensus 174 --~~~~~~~~~~l~~L~~~-~--~gn~r~L~~~l~~~~~~ 208 (226)
T TIGR03420 174 --RRGLQLPDEVADYLLRH-G--SRDMGSLMALLDALDRA 208 (226)
T ss_pred --HcCCCCCHHHHHHHHHh-c--cCCHHHHHHHHHHHHHH
Confidence 11356999999999995 4 77789999999986543
No 154
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1e-11 Score=143.56 Aligned_cols=184 Identities=24% Similarity=0.345 Sum_probs=117.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
||||+.+++.|..++... + ....+||+||+|+|||++|+++|+.+++.
T Consensus 18 iiGq~~~~~~L~~~i~~~--~----------------------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~ 67 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAEG--R----------------------------VAHAYLFTGPRGVGKTSTARILAKAVNCTTN 67 (585)
T ss_pred hcCCHHHHHHHHHHHHhC--C----------------------------CceEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 899999999998777421 0 02457999999999999999999998542
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccc
Q 005762 353 -----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESL 409 (678)
Q Consensus 353 -----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~ 409 (678)
++.++.+. ..+ ...++.+.......-..+...||||||+|.|...
T Consensus 68 ~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~-----~~~---vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~---- 135 (585)
T PRK14950 68 DPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS-----HTS---VDDAREIIERVQFRPALARYKVYIIDEVHMLSTA---- 135 (585)
T ss_pred CCCCCCCccCHHHHHHhcCCCCeEEEEeccc-----cCC---HHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH----
Confidence 12222211 111 1223333332221111245679999999999876
Q ss_pred cccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccc
Q 005762 410 NISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRAN 489 (678)
Q Consensus 410 ~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~ 489 (678)
.++.||+.||.- ..+.+||++.+ ++++
T Consensus 136 ----------a~naLLk~LEep---------------------p~~tv~Il~t~--~~~k-------------------- 162 (585)
T PRK14950 136 ----------AFNALLKTLEEP---------------------PPHAIFILATT--EVHK-------------------- 162 (585)
T ss_pred ----------HHHHHHHHHhcC---------------------CCCeEEEEEeC--Chhh--------------------
Confidence 899999999841 11234454332 1111
Q ss_pred cccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCH
Q 005762 490 MRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569 (678)
Q Consensus 490 ~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ 569 (678)
+.+.+.+|.. .+.|.+++.+++.+++... +...+ +.+++
T Consensus 163 ---------------------------ll~tI~SR~~-~i~f~~l~~~el~~~L~~~-----------a~~eg--l~i~~ 201 (585)
T PRK14950 163 ---------------------------VPATILSRCQ-RFDFHRHSVADMAAHLRKI-----------AAAEG--INLEP 201 (585)
T ss_pred ---------------------------hhHHHHhccc-eeeCCCCCHHHHHHHHHHH-----------HHHcC--CCCCH
Confidence 2223344543 5789999999988877631 11223 44899
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 570 KALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 570 eal~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+++..|++.+ +.+.|.+.+.++++.
T Consensus 202 eal~~La~~s---~Gdlr~al~~LekL~ 226 (585)
T PRK14950 202 GALEAIARAA---TGSMRDAENLLQQLA 226 (585)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 9999999985 556888888888754
No 155
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.3e-12 Score=142.54 Aligned_cols=176 Identities=28% Similarity=0.371 Sum_probs=127.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.+.|.......+.+.+.... .+.......|. .++.++|++||||||||.+++++|+..+..+
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl---~~~~~~~s~g~---------------~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~ 246 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPL---RHPALFKSIGI---------------KPPRGLLLYGPPGTGKTFLVRAVANEYGAFL 246 (693)
T ss_pred ccchhHHHHHHHHHHHHhhh---cchhhhhhcCC---------------CCCCCccccCCCCCChHHHHHHHHHHhCcee
Confidence 36788888888888775321 11111111111 2468999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhc-CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQ-QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~-~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~ 432 (678)
+.+++.++. ..|-|+. ++.+++.|+.+... + +.||||||+|.+.+++..... + ...+..+|+.+|+|-.
T Consensus 247 ~~i~~peli-~k~~gEt-e~~LR~~f~~a~k~----~~psii~IdEld~l~p~r~~~~~---~-e~Rv~sqlltL~dg~~ 316 (693)
T KOG0730|consen 247 FLINGPELI-SKFPGET-ESNLRKAFAEALKF----QVPSIIFIDELDALCPKREGADD---V-ESRVVSQLLTLLDGLK 316 (693)
T ss_pred EecccHHHH-Hhcccch-HHHHHHHHHHHhcc----CCCeeEeHHhHhhhCCcccccch---H-HHHHHHHHHHHHhhCc
Confidence 999999988 4577888 89999999988654 4 899999999999997654322 1 3358889999999622
Q ss_pred eecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhh
Q 005762 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (678)
Q Consensus 433 v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edL 512 (678)
.....|+++++|. .
T Consensus 317 -----------~~~~vivl~atnr--------p----------------------------------------------- 330 (693)
T KOG0730|consen 317 -----------PDAKVIVLAATNR--------P----------------------------------------------- 330 (693)
T ss_pred -----------CcCcEEEEEecCC--------c-----------------------------------------------
Confidence 1223344444443 1
Q ss_pred hhhcCCcccc-cccceEEecCCcCHHHHHHHHhc
Q 005762 513 IAYGLIPEFV-GRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 513 i~~g~~Pefl-~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
..+.|.+. +|||.-+.+.-++..+..+|++.
T Consensus 331 --~sld~alRRgRfd~ev~IgiP~~~~RldIl~~ 362 (693)
T KOG0730|consen 331 --DSLDPALRRGRFDREVEIGIPGSDGRLDILRV 362 (693)
T ss_pred --cccChhhhcCCCcceeeecCCCchhHHHHHHH
Confidence 12556666 69999899999998888888874
No 156
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1e-11 Score=144.63 Aligned_cols=197 Identities=23% Similarity=0.317 Sum_probs=139.7
Q ss_pred CHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHH
Q 005762 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (678)
Q Consensus 263 ~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LA 342 (678)
+...-...||. |||.++.++.+.+.|.++ .++|.+|+|+||+|||.++
T Consensus 161 t~~Ar~gklDP-vIGRd~EI~r~iqIL~RR-------------------------------~KNNPvLiGEpGVGKTAIv 208 (786)
T COG0542 161 TELAREGKLDP-VIGRDEEIRRTIQILSRR-------------------------------TKNNPVLVGEPGVGKTAIV 208 (786)
T ss_pred HHHHhcCCCCC-CcChHHHHHHHHHHHhcc-------------------------------CCCCCeEecCCCCCHHHHH
Confidence 34444555665 899999999998888632 3689999999999999999
Q ss_pred HHHHHHh----------CCCEEEEecccccc-ccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccc
Q 005762 343 KTLARHV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (678)
Q Consensus 343 ralA~~l----------~~~fv~id~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~ 411 (678)
+-+|... +..++.+|++.+.. ++|.|+- +..+..++... ..+.+.||||||||.+.......+
T Consensus 209 EGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF-EeRlk~vl~ev----~~~~~vILFIDEiHtiVGAG~~~G- 282 (786)
T COG0542 209 EGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF-EERLKAVLKEV----EKSKNVILFIDEIHTIVGAGATEG- 282 (786)
T ss_pred HHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH-HHHHHHHHHHH----hcCCCeEEEEechhhhcCCCcccc-
Confidence 9999766 45789999998763 4687776 66777776554 344578999999999987532211
Q ss_pred cCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 412 SRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 412 ~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
+ .-++.|.|.++|. |.... | |++
T Consensus 283 ~----a~DAaNiLKPaLARGeL~~------------------------I--GAT-------------------------- 306 (786)
T COG0542 283 G----AMDAANLLKPALARGELRC------------------------I--GAT-------------------------- 306 (786)
T ss_pred c----ccchhhhhHHHHhcCCeEE------------------------E--Eec--------------------------
Confidence 1 2348899999998 53332 2 221
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+..++.+.++. .+.|-.||.. |.+..++.++-..||.- |...|.. .+.+.++++
T Consensus 307 --------T~~EYRk~iEK--------D~AL~RRFQ~-V~V~EPs~e~ti~ILrG----lk~~yE~-----hH~V~i~D~ 360 (786)
T COG0542 307 --------TLDEYRKYIEK--------DAALERRFQK-VLVDEPSVEDTIAILRG----LKERYEA-----HHGVRITDE 360 (786)
T ss_pred --------cHHHHHHHhhh--------chHHHhcCce-eeCCCCCHHHHHHHHHH----HHHHHHH-----ccCceecHH
Confidence 12334444443 3455566655 57899999999999984 6666654 445679999
Q ss_pred HHHHHHHhh
Q 005762 571 ALRVIAKKA 579 (678)
Q Consensus 571 al~~La~~a 579 (678)
|+...+..+
T Consensus 361 Al~aAv~LS 369 (786)
T COG0542 361 ALVAAVTLS 369 (786)
T ss_pred HHHHHHHHH
Confidence 998877764
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.4e-11 Score=140.80 Aligned_cols=184 Identities=25% Similarity=0.350 Sum_probs=122.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC---
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--- 351 (678)
|+||+.+++.|..++.+. . -+..+||+||+|+|||++|+++|+.+.+
T Consensus 19 viGq~~~~~~L~~~i~~~-------~-----------------------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~ 68 (614)
T PRK14971 19 VVGQEALTTTLKNAIATN-------K-----------------------LAHAYLFCGPRGVGKTTCARIFAKTINCQNL 68 (614)
T ss_pred hcCcHHHHHHHHHHHHcC-------C-----------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 899999999998887521 0 1244899999999999999999998853
Q ss_pred ----------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccc
Q 005762 352 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESL 409 (678)
Q Consensus 352 ----------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~ 409 (678)
.++.+|+.+. .+ ...++.+...+...-..+..-||+|||+|.+...
T Consensus 69 ~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~-----~~---vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~---- 136 (614)
T PRK14971 69 TADGEACNECESCVAFNEQRSYNIHELDAASN-----NS---VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA---- 136 (614)
T ss_pred CCCCCCCCcchHHHHHhcCCCCceEEeccccc-----CC---HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH----
Confidence 2233333211 01 2334455443322212235569999999999876
Q ss_pred cccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccc
Q 005762 410 NISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRAN 489 (678)
Q Consensus 410 ~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~ 489 (678)
.+++||+.||.- ..+.+||++++..
T Consensus 137 ----------a~naLLK~LEep---------------------p~~tifIL~tt~~------------------------ 161 (614)
T PRK14971 137 ----------AFNAFLKTLEEP---------------------PSYAIFILATTEK------------------------ 161 (614)
T ss_pred ----------HHHHHHHHHhCC---------------------CCCeEEEEEeCCc------------------------
Confidence 899999999931 1123455543310
Q ss_pred cccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCH
Q 005762 490 MRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569 (678)
Q Consensus 490 ~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ 569 (678)
..+.+.+.+|.. ++.|.+++++++...+... +...+ +.+++
T Consensus 162 -------------------------~kIl~tI~SRc~-iv~f~~ls~~ei~~~L~~i-----------a~~eg--i~i~~ 202 (614)
T PRK14971 162 -------------------------HKILPTILSRCQ-IFDFNRIQVADIVNHLQYV-----------ASKEG--ITAEP 202 (614)
T ss_pred -------------------------hhchHHHHhhhh-eeecCCCCHHHHHHHHHHH-----------HHHcC--CCCCH
Confidence 014455566653 5899999999998877631 11224 55899
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 570 KALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 570 eal~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+++++|+..+ +.+.|.+.+.++.++
T Consensus 203 ~al~~La~~s---~gdlr~al~~Lekl~ 227 (614)
T PRK14971 203 EALNVIAQKA---DGGMRDALSIFDQVV 227 (614)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 9999999986 566788877777654
No 158
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.33 E-value=2.4e-11 Score=128.73 Aligned_cols=184 Identities=23% Similarity=0.338 Sum_probs=115.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---- 350 (678)
++|++++++.|..++... ...+++|+||||||||++++++++.+.
T Consensus 19 ~~g~~~~~~~l~~~i~~~-------------------------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~ 67 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEK-------------------------------NMPHLLFAGPPGTGKTTAALALARELYGEDW 67 (319)
T ss_pred hcCcHHHHHHHHHHHhCC-------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 689999999887776310 124699999999999999999999873
Q ss_pred -CCEEEEeccccccccccccc-hHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHH
Q 005762 351 -VPFVIADATTLTQAGYVGED-VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (678)
Q Consensus 351 -~~fv~id~s~l~~sgyvG~~-~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~L 428 (678)
..++.+++++... .. ....+.......+ ...+...+|+|||+|.+... .++.|++++
T Consensus 68 ~~~~i~~~~~~~~~-----~~~~~~~i~~~~~~~~--~~~~~~~vviiDe~~~l~~~--------------~~~~L~~~l 126 (319)
T PRK00440 68 RENFLELNASDERG-----IDVIRNKIKEFARTAP--VGGAPFKIIFLDEADNLTSD--------------AQQALRRTM 126 (319)
T ss_pred ccceEEeccccccc-----hHHHHHHHHHHHhcCC--CCCCCceEEEEeCcccCCHH--------------HHHHHHHHH
Confidence 2455555543221 11 1112222221111 11123569999999998765 778899998
Q ss_pred hcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcc
Q 005762 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (678)
Q Consensus 429 Eg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~ 508 (678)
+.. ..+..||++++...
T Consensus 127 e~~---------------------~~~~~lIl~~~~~~------------------------------------------ 143 (319)
T PRK00440 127 EMY---------------------SQNTRFILSCNYSS------------------------------------------ 143 (319)
T ss_pred hcC---------------------CCCCeEEEEeCCcc------------------------------------------
Confidence 721 01123444333110
Q ss_pred hhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHH
Q 005762 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARG 588 (678)
Q Consensus 509 ~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~ 588 (678)
.+.+.+.+|+. ++.|.+++.+++..++... +...+ +.++++++++|++.+ +...|.
T Consensus 144 -------~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~-----------~~~~~--~~i~~~al~~l~~~~---~gd~r~ 199 (319)
T PRK00440 144 -------KIIDPIQSRCA-VFRFSPLKKEAVAERLRYI-----------AENEG--IEITDDALEAIYYVS---EGDMRK 199 (319)
T ss_pred -------ccchhHHHHhh-eeeeCCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---CCCHHH
Confidence 02233444554 5799999999998887742 11223 458999999999985 456777
Q ss_pred HHHHHHHHH
Q 005762 589 LRAILESIL 597 (678)
Q Consensus 589 Lr~iIE~il 597 (678)
+.+.++...
T Consensus 200 ~~~~l~~~~ 208 (319)
T PRK00440 200 AINALQAAA 208 (319)
T ss_pred HHHHHHHHH
Confidence 777776544
No 159
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.32 E-value=1.6e-11 Score=144.81 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=90.4
Q ss_pred HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccc--cccccccCCcEEEEcCCCcHHHHHHHH
Q 005762 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDN--DDNVELEKSNVLLMGPTGSGKTLLAKT 344 (678)
Q Consensus 267 l~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~--~~~v~~~~~~iLL~GPpGtGKT~LAra 344 (678)
|.+.+...|+|++.+|+.|.-++... . ++.... ....+. ...-.....||||+|+||||||.+|++
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~gG-------~-~k~~~~----~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~ 511 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFSG-------N-KNSSDF----NKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHY 511 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhcC-------C-cccccc----ccccccccccccccCCceEEEeCCCCccHHHHHHH
Confidence 44445566999999999886666311 0 000000 000000 000112357999999999999999999
Q ss_pred HHHHhC-------CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCch
Q 005762 345 LARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (678)
Q Consensus 345 lA~~l~-------~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~ 417 (678)
+++... .++..++++.... +.... ...+....+.+..+.+|+++|||++++...
T Consensus 512 Ih~lspR~~ytsG~~~s~vgLTa~~~--~~d~~-----tG~~~le~GaLvlAdgGtL~IDEidkms~~------------ 572 (915)
T PTZ00111 512 THLLSPRSIYTSGKSSSSVGLTASIK--FNESD-----NGRAMIQPGAVVLANGGVCCIDELDKCHNE------------ 572 (915)
T ss_pred HHHhCCccccCCCCCCccccccchhh--hcccc-----cCcccccCCcEEEcCCCeEEecchhhCCHH------------
Confidence 999763 3444444443211 00000 001112233455678899999999999887
Q ss_pred hHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCc
Q 005762 418 EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKD 455 (678)
Q Consensus 418 ~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsN 455 (678)
.|.+|+++||...++|...|.....+.+..++.+.|
T Consensus 573 --~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaN 608 (915)
T PTZ00111 573 --SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCN 608 (915)
T ss_pred --HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcC
Confidence 999999999976666655554333333333333333
No 160
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.32 E-value=4.1e-13 Score=125.22 Aligned_cols=111 Identities=27% Similarity=0.297 Sum_probs=64.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc-ccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhh
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT-TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s-~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
|+||+|+||+|||++|+++|+.++..|.++.++ ++..+...|..+...-...|.-..+.+ -..||++|||.+..++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPi---f~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPI---FTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChh---hhceeeecccccCCHH
Confidence 699999999999999999999999999999987 566554444432111111111111111 2359999999999998
Q ss_pred hccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcc
Q 005762 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDI 456 (678)
Q Consensus 406 ~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNi 456 (678)
+|++||++|+.+.+.+. |.........+++.|.|.
T Consensus 78 --------------tQsAlLeam~Er~Vt~~--g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTID--GQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEET--TEEEE--SS-EEEEEE-T
T ss_pred --------------HHHHHHHHHHcCeEEeC--CEEEECCCcEEEEEecCc
Confidence 99999999998888763 333333344445555554
No 161
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=6.9e-11 Score=129.50 Aligned_cols=211 Identities=21% Similarity=0.259 Sum_probs=127.4
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l--- 349 (678)
+.++|.+...+.|...+..... . ..+.+++|+||||||||++++.+++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~-----~----------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR-----G----------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-----C----------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4478999999999888753311 0 013679999999999999999999887
Q ss_pred --CCCEEEEeccccccc------------c----ccccchHHHHHHHHHhhchhHhh-hcCcEEEEcCccchhhhhcccc
Q 005762 350 --NVPFVIADATTLTQA------------G----YVGEDVESILYKLLAQAEFNVEA-AQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 350 --~~~fv~id~s~l~~s------------g----yvG~~~~~~l~~l~~~a~~~v~~-a~~gILfIDEIDkl~~~~~~~~ 410 (678)
+..++.++|...... + ..+......+..+.. .+.. ..+.||+|||+|.+... .
T Consensus 83 ~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~viviDE~d~l~~~-~--- 154 (394)
T PRK00411 83 AVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAE----YLDERDRVLIVALDDINYLFEK-E--- 154 (394)
T ss_pred cCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH----HHHhcCCEEEEEECCHhHhhcc-C---
Confidence 467899998754311 0 011111111221111 1111 23468999999998721 0
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
+...+..|++.++. ....++.+|+.++..++...
T Consensus 155 ------~~~~l~~l~~~~~~--------------------~~~~~v~vI~i~~~~~~~~~-------------------- 188 (394)
T PRK00411 155 ------GNDVLYSLLRAHEE--------------------YPGARIGVIGISSDLTFLYI-------------------- 188 (394)
T ss_pred ------CchHHHHHHHhhhc--------------------cCCCeEEEEEEECCcchhhh--------------------
Confidence 11266666666552 11225567776664332111
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCccccccc-ceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRF-PILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~-~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ 569 (678)
+.|.+.+|+ ...+.|++++.+++.+|+... +. .-+ ..-.+++
T Consensus 189 --------------------------l~~~~~s~~~~~~i~f~py~~~e~~~il~~r---~~----~~~----~~~~~~~ 231 (394)
T PRK00411 189 --------------------------LDPRVKSVFRPEEIYFPPYTADEIFDILKDR---VE----EGF----YPGVVDD 231 (394)
T ss_pred --------------------------cCHHHHhcCCcceeecCCCCHHHHHHHHHHH---HH----hhc----ccCCCCH
Confidence 222333344 236899999999999998852 11 111 1224899
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 005762 570 KALRVIAKKATAKNTGARGLRAILESILTEAM 601 (678)
Q Consensus 570 eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~ 601 (678)
++++.+++.+......+|..-.++..++..+.
T Consensus 232 ~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 232 EVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 99999999875434557776677766555444
No 162
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.6e-12 Score=139.47 Aligned_cols=184 Identities=22% Similarity=0.318 Sum_probs=112.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---- 350 (678)
|+||+.||++|..+.. -..|+||+||||||||+||+.+..++-
T Consensus 181 V~GQ~~AKrAleiAAA---------------------------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~ 227 (490)
T COG0606 181 VKGQEQAKRALEIAAA---------------------------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSI 227 (490)
T ss_pred hcCcHHHHHHHHHHHh---------------------------------cCCcEEEecCCCCchHHhhhhhcccCCCCCh
Confidence 9999999999977763 137999999999999999999987661
Q ss_pred CCEEE------Eecc-----------ccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccC
Q 005762 351 VPFVI------ADAT-----------TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (678)
Q Consensus 351 ~~fv~------id~s-----------~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~ 413 (678)
..+++ ++.. -|..... ..+....+..--...++.+..+++|||||||+-.+...
T Consensus 228 ~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHH-saS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~-------- 298 (490)
T COG0606 228 PEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHH-SASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS-------- 298 (490)
T ss_pred HHHHHHHHHhhhcccccccCccceeCCccCCCc-cchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH--------
Confidence 00110 0000 0000000 00000000000112356677889999999999988765
Q ss_pred CCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccC
Q 005762 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (678)
Q Consensus 414 d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~ 493 (678)
+++.|.+.||...+.|...+.....+.++..+...|... ||+.. .+... -
T Consensus 299 ------iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcp--cG~~~------------------~~~~~----C 348 (490)
T COG0606 299 ------ILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCP--CGNLG------------------APLRR----C 348 (490)
T ss_pred ------HHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCC--ccCCC------------------CCCCC----c
Confidence 999999999966666666555555555555666666421 23221 11100 0
Q ss_pred CCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHH
Q 005762 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLV 540 (678)
Q Consensus 494 ~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~ 540 (678)
.........++++ +.-.|+.|||..+..+.++..++.
T Consensus 349 ~c~~~~~~~Y~~k----------lSgp~lDRiDl~vev~~~~~~e~~ 385 (490)
T COG0606 349 PCSPRQIKRYLNK----------LSGPFLDRIDLMVEVPRLSAGELI 385 (490)
T ss_pred CCCHHHHHHHHHH----------hhHHHHhhhhheecccCCCHHHhh
Confidence 1222333445554 667899999999999999865553
No 163
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=3.7e-11 Score=130.22 Aligned_cols=213 Identities=16% Similarity=0.222 Sum_probs=124.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC---
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--- 350 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~--- 350 (678)
.++|++..++.|...+..... + ..+.+++|+||||||||++++.+++.+.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~-----~----------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~ 68 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR-----G----------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAA 68 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc-----C----------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 479999999999888753211 0 0236899999999999999999998762
Q ss_pred ------CCEEEEecccccccc---------c---------cccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhh
Q 005762 351 ------VPFVIADATTLTQAG---------Y---------VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (678)
Q Consensus 351 ------~~fv~id~s~l~~sg---------y---------vG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~ 406 (678)
..++.++|....... + .+.+....+..++.... ....+.||+|||+|.+....
T Consensus 69 ~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlvIDE~d~L~~~~ 145 (365)
T TIGR02928 69 EDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN---ERGDSLIIVLDEIDYLVGDD 145 (365)
T ss_pred hccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEECchhhhccCC
Confidence 468889987543210 0 01111111222221110 11245689999999996320
Q ss_pred ccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccc
Q 005762 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (678)
Q Consensus 407 ~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~ 486 (678)
..+...|+++.+-. .....++.+|+.++..++..
T Consensus 146 -----------~~~L~~l~~~~~~~------------------~~~~~~v~lI~i~n~~~~~~----------------- 179 (365)
T TIGR02928 146 -----------DDLLYQLSRARSNG------------------DLDNAKVGVIGISNDLKFRE----------------- 179 (365)
T ss_pred -----------cHHHHhHhcccccc------------------CCCCCeEEEEEEECCcchHh-----------------
Confidence 01344444442100 01223456666555332110
Q ss_pred ccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc-eEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCcee
Q 005762 487 RANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP-ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (678)
Q Consensus 487 ~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~-~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l 565 (678)
.+.+.+.+||. ..+.|++++.+++.+|+..... ..+ ...
T Consensus 180 -----------------------------~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~-------~~~----~~~ 219 (365)
T TIGR02928 180 -----------------------------NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE-------KAF----YDG 219 (365)
T ss_pred -----------------------------hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH-------hhc----cCC
Confidence 03333445553 4689999999999999985211 001 122
Q ss_pred eeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHh
Q 005762 566 HFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (678)
Q Consensus 566 ~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~ 602 (678)
.+++++++++++.+......+|....+++.++..+..
T Consensus 220 ~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 220 VLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred CCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4889999998887543445678777777776655543
No 164
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.28 E-value=4.8e-11 Score=122.79 Aligned_cols=69 Identities=16% Similarity=0.307 Sum_probs=53.2
Q ss_pred CCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005762 517 LIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (678)
Q Consensus 517 ~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE 594 (678)
+.|.|.+|+. .++.+.+++.+++.+|+... . ... .+.++++++++|+++. ....|.|..+++
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~-------a----~~~--~~~l~~~v~~~L~~~~---~~d~r~l~~~l~ 211 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQLR-------A----RLR--GFELPEDVGRFLLKRL---DREMRTLFMTLD 211 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHHHH-------H----HHc--CCCCCHHHHHHHHHhh---cCCHHHHHHHHH
Confidence 4577888885 57899999999999998641 1 112 3679999999999996 677899999999
Q ss_pred HHHHHHH
Q 005762 595 SILTEAM 601 (678)
Q Consensus 595 ~il~~a~ 601 (678)
++-..++
T Consensus 212 ~l~~~~l 218 (235)
T PRK08084 212 QLDRASI 218 (235)
T ss_pred HHHHHHH
Confidence 8643343
No 165
>PHA02244 ATPase-like protein
Probab=99.27 E-value=6.8e-11 Score=128.17 Aligned_cols=202 Identities=14% Similarity=0.199 Sum_probs=115.6
Q ss_pred CChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccc--cccccccccchHHHHHHHHHhhch
Q 005762 307 AEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT--LTQAGYVGEDVESILYKLLAQAEF 384 (678)
Q Consensus 307 ~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~--l~~sgyvG~~~~~~l~~l~~~a~~ 384 (678)
.++.+.........+.....++||+||||||||++|++||..++.||+.++... +.-.|++... .......+..
T Consensus 101 ~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~-g~~~dgpLl~--- 176 (383)
T PHA02244 101 SNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN-GKFHETPFYE--- 176 (383)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccc-ccccchHHHH---
Confidence 334444444444444556789999999999999999999999999999998531 1101222111 1100011111
Q ss_pred hHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCC
Q 005762 385 NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (678)
Q Consensus 385 ~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf 464 (678)
....+++||||||+.+.++ ++..|..+++...+... +... ....++.+|+|+|.
T Consensus 177 --A~~~GgvLiLDEId~a~p~--------------vq~~L~~lLd~r~l~l~--g~~i--------~~h~~FRlIATsN~ 230 (383)
T PHA02244 177 --AFKKGGLFFIDEIDASIPE--------------ALIIINSAIANKFFDFA--DERV--------TAHEDFRVISAGNT 230 (383)
T ss_pred --HhhcCCEEEEeCcCcCCHH--------------HHHHHHHHhccCeEEec--CcEE--------ecCCCEEEEEeeCC
Confidence 1236789999999999887 99999999986555432 2221 12345566666664
Q ss_pred cCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHh
Q 005762 465 VDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLT 544 (678)
Q Consensus 465 ~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~ 544 (678)
..- |+.. ++. =...+.++|++||- +|.|..+++.|. .|+.
T Consensus 231 ~~~-------------G~~~------------------~y~-------G~k~L~~AllDRFv-~I~~dyp~~~E~-~i~~ 270 (383)
T PHA02244 231 LGK-------------GADH------------------IYV-------ARNKIDGATLDRFA-PIEFDYDEKIEH-LISN 270 (383)
T ss_pred Ccc-------------Cccc------------------ccC-------CCcccCHHHHhhcE-EeeCCCCcHHHH-HHhh
Confidence 210 0000 000 01237788899995 567777764333 2332
Q ss_pred --chHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 545 --EPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 545 --~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
..+-.+....+..+...+....++..++-+.++.
T Consensus 271 ~~~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a~~ 306 (383)
T PHA02244 271 GDEDLVNFVALLRHEMAEKGLDHVFSMRAIIHGKKF 306 (383)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Confidence 2222333444444444566666666666555553
No 166
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.27 E-value=7.4e-11 Score=137.40 Aligned_cols=206 Identities=18% Similarity=0.255 Sum_probs=127.1
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCc-EEEEcCCCcHHHHHHHHHHHHh--
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSN-VLLMGPTGSGKTLLAKTLARHV-- 349 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~-iLL~GPpGtGKT~LAralA~~l-- 349 (678)
+.+.|.|.-++.|..+|...... ..+.+ ++|+|+||||||++++.+.+.+
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------------------------sgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------------------------SGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------------------------CCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34789999999998888643210 01234 4699999999999999998776
Q ss_pred --------CCCEEEEecccccccc---------c------cccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhh
Q 005762 350 --------NVPFVIADATTLTQAG---------Y------VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (678)
Q Consensus 350 --------~~~fv~id~s~l~~sg---------y------vG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~ 406 (678)
...++.++|..+.... + .|......+..+|...... .....||+|||||.|...
T Consensus 808 eaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~--~r~v~IIILDEID~L~kK- 884 (1164)
T PTZ00112 808 KTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKD--NRNVSILIIDEIDYLITK- 884 (1164)
T ss_pred HHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcc--cccceEEEeehHhhhCcc-
Confidence 1467899997544210 0 1111123334444332110 012349999999999765
Q ss_pred ccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccc
Q 005762 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (678)
Q Consensus 407 ~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~ 486 (678)
.+..|+.+++-.. .....+++|+.++..++..
T Consensus 885 -------------~QDVLYnLFR~~~------------------~s~SKLiLIGISNdlDLpe----------------- 916 (1164)
T PTZ00112 885 -------------TQKVLFTLFDWPT------------------KINSKLVLIAISNTMDLPE----------------- 916 (1164)
T ss_pred -------------HHHHHHHHHHHhh------------------ccCCeEEEEEecCchhcch-----------------
Confidence 5667777776200 0122345665555322110
Q ss_pred ccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCcee
Q 005762 487 RANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (678)
Q Consensus 487 ~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l 565 (678)
.+.|.+.+|+.. .+.|+||+.++|.+||..-+.. . ..
T Consensus 917 -----------------------------rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~----------A---~g 954 (1164)
T PTZ00112 917 -----------------------------RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN----------C---KE 954 (1164)
T ss_pred -----------------------------hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh----------C---CC
Confidence 134445556643 4789999999999999852110 1 23
Q ss_pred eeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 566 HFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 566 ~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
.|++++++++|+++....+.||..-.+++..+.
T Consensus 955 VLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 955 IIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred CCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 599999999999876666778876666665553
No 167
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.27 E-value=1.3e-11 Score=143.01 Aligned_cols=50 Identities=42% Similarity=0.571 Sum_probs=42.0
Q ss_pred HhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 269 ~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
+.|.+.|+||+++++.|..++.. ..+++|+||||||||++|+++++.
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~---------------------------------~~~~ll~G~pG~GKT~la~~la~~ 60 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ---------------------------------KRNVLLIGEPGVGKSMLAKAMAEL 60 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc---------------------------------CCCEEEECCCCCCHHHHHHHHHHH
Confidence 35556699999999998887741 258999999999999999999998
Q ss_pred hCC
Q 005762 349 VNV 351 (678)
Q Consensus 349 l~~ 351 (678)
++.
T Consensus 61 l~~ 63 (608)
T TIGR00764 61 LPD 63 (608)
T ss_pred cCc
Confidence 854
No 168
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.26 E-value=4.7e-11 Score=121.44 Aligned_cols=161 Identities=16% Similarity=0.244 Sum_probs=108.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 401 (678)
..+++|+||+|||||+||+++++.+ +.+++.+++.++... +.. .....+|||||+|.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~--------------~~~------~~~~~~liiDdi~~ 101 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA--------------FDF------DPEAELYAVDDVER 101 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH--------------Hhh------cccCCEEEEeChhh
Confidence 3689999999999999999999876 568888888765411 000 11346999999998
Q ss_pred hhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCC
Q 005762 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (678)
Q Consensus 402 l~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ig 481 (678)
+... .+..|+.+++.... ....++|++++...
T Consensus 102 l~~~--------------~~~~L~~~~~~~~~-------------------~~~~~vl~~~~~~~--------------- 133 (227)
T PRK08903 102 LDDA--------------QQIALFNLFNRVRA-------------------HGQGALLVAGPAAP--------------- 133 (227)
T ss_pred cCch--------------HHHHHHHHHHHHHH-------------------cCCcEEEEeCCCCH---------------
Confidence 7654 67778888863110 01122344333110
Q ss_pred cCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCccccccc--ceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHh
Q 005762 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRF--PILVSLTALTEDQLVKVLTEPKNALGKQYKRLFS 559 (678)
Q Consensus 482 F~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~--~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~ 559 (678)
....+.++|.+|+ ...+.+++|++++...++.. +. .
T Consensus 134 -------------------------------~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~----~~-------~ 171 (227)
T PRK08903 134 -------------------------------LALPLREDLRTRLGWGLVYELKPLSDADKIAALKA----AA-------A 171 (227)
T ss_pred -------------------------------HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH----HH-------H
Confidence 0011456677777 35899999999887776653 11 1
Q ss_pred cCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 005762 560 MNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (678)
Q Consensus 560 ~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a 600 (678)
.. .+.++++++++|++. | ..+.|.|+++++.+-..+
T Consensus 172 ~~--~v~l~~~al~~L~~~-~--~gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 172 ER--GLQLADEVPDYLLTH-F--RRDMPSLMALLDALDRYS 207 (227)
T ss_pred Hc--CCCCCHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHH
Confidence 12 366999999999995 4 677899999999865544
No 169
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.24 E-value=6.4e-11 Score=136.87 Aligned_cols=203 Identities=19% Similarity=0.217 Sum_probs=123.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC--CEEEEeccccccccccccc-hHHHHH-HHHHhhchhHhhhcCcEEEEcCccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQAGYVGED-VESILY-KLLAQAEFNVEAAQQGMVYIDEVDK 401 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~--~fv~id~s~l~~sgyvG~~-~~~~l~-~l~~~a~~~v~~a~~gILfIDEIDk 401 (678)
.+|||.|+||||||++|++|++.+.. ||+.+... .+....+|.- +...+. ..+....+.+..++++|||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~-~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLG-VTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc-cchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 78999999999999999999999853 79988863 2222233321 111110 1112223455667889999999999
Q ss_pred hhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCC
Q 005762 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (678)
Q Consensus 402 l~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ig 481 (678)
+.+. +|+.|+++|+...+++...|..... ..++.+|+|.|..+
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~~~~~--------p~~f~lIAt~np~e--------------- 138 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGISVVH--------PAKFALIATYDPAE--------------- 138 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCCceee--------cCceEEEEecCCcc---------------
Confidence 9987 9999999999555544333322211 23455565554321
Q ss_pred cCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcC-HHHHHHHHhchHHHH----------
Q 005762 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT-EDQLVKVLTEPKNAL---------- 550 (678)
Q Consensus 482 F~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Ls-eeeL~~Il~~~ln~L---------- 550 (678)
....|.+.|+.||+..|.+..+. .++..+|+.......
T Consensus 139 -------------------------------~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~ 187 (589)
T TIGR02031 139 -------------------------------GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELEL 187 (589)
T ss_pred -------------------------------ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHH
Confidence 00127888999999977776654 444566665532111
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCC-HHHHHHHHHHHH
Q 005762 551 GKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTG-ARGLRAILESIL 597 (678)
Q Consensus 551 ~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~G-AR~Lr~iIE~il 597 (678)
...+.......-..+.++++++++|++.+...+.. .|....++.-.-
T Consensus 188 ~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~Ar 235 (589)
T TIGR02031 188 LRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAK 235 (589)
T ss_pred HHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 11111112222345678999999999988754443 454444444333
No 170
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.24 E-value=1.5e-10 Score=123.06 Aligned_cols=64 Identities=34% Similarity=0.558 Sum_probs=49.8
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC--
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN-- 350 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~-- 350 (678)
+-+|||.+|.++--..+. .+ ..++. ..+.+||.||||||||.||-.||+.|+
T Consensus 39 dG~VGQ~~AReAaGvIv~----mi-k~gk~---------------------aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 39 DGLVGQEEAREAAGVIVK----MI-KQGKM---------------------AGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred CcccchHHHHHhhhHHHH----HH-HhCcc---------------------cccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 347999999998766653 11 12211 237899999999999999999999995
Q ss_pred CCEEEEeccccc
Q 005762 351 VPFVIADATTLT 362 (678)
Q Consensus 351 ~~fv~id~s~l~ 362 (678)
.||+.++++++.
T Consensus 93 vPF~~isgsEiY 104 (450)
T COG1224 93 VPFVAISGSEIY 104 (450)
T ss_pred CCceeeccceee
Confidence 799999998754
No 171
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.22 E-value=4e-12 Score=119.19 Aligned_cols=122 Identities=25% Similarity=0.395 Sum_probs=72.4
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccc-cccccchHHHHHHHHHhhchhH--hhhcCcEEEEcCccchh
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNV--EAAQQGMVYIDEVDKIT 403 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~s-gyvG~~~~~~l~~l~~~a~~~v--~~a~~gILfIDEIDkl~ 403 (678)
+|||+||||||||++|+.+|+.++.+++.+.++..+.. .+.|.-.-. ...+.-....+ ....++|+|||||+++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 58999999999999999999999999999999865432 111111000 00000001111 11267899999999988
Q ss_pred hhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcC
Q 005762 404 KKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD 466 (678)
Q Consensus 404 ~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~ 466 (678)
+. +++.|+.+||+....++..+......... ....++.||+|.|..+
T Consensus 79 ~~--------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 79 PE--------------VLESLLSLLEERRIQLPEGGEEIKEPNND--LASPNFRIIATMNPRD 125 (139)
T ss_dssp HH--------------HHHTTHHHHSSSEEEE-TSSSEEE--TT--------EEEEEEESSST
T ss_pred HH--------------HHHHHHHHHhhCcccccCCCcEEecCccc--ccccceEEEEEEcCCC
Confidence 76 99999999996666555443322221111 1122578888877553
No 172
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=2.6e-10 Score=124.15 Aligned_cols=194 Identities=24% Similarity=0.325 Sum_probs=116.2
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
+.|++..+ |+||+++++.|..++... . -+..+||+||+|+|||++
T Consensus 17 ~~P~~~~~-----l~Gh~~a~~~L~~a~~~g-------r-----------------------l~ha~L~~G~~G~GKttl 61 (351)
T PRK09112 17 PSPSENTR-----LFGHEEAEAFLAQAYREG-------K-----------------------LHHALLFEGPEGIGKATL 61 (351)
T ss_pred CCCCchhh-----ccCcHHHHHHHHHHHHcC-------C-----------------------CCeeEeeECCCCCCHHHH
Confidence 45554433 899999999998887511 0 124599999999999999
Q ss_pred HHHHHHHhCC-------CEEEE----ecc---ccc---cccc--cc----cc--------hHHHHHHHHHhhchhHhhhc
Q 005762 342 AKTLARHVNV-------PFVIA----DAT---TLT---QAGY--VG----ED--------VESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 342 AralA~~l~~-------~fv~i----d~s---~l~---~sgy--vG----~~--------~~~~l~~l~~~a~~~v~~a~ 390 (678)
|+.+|+.+.. +.... +|. .+. ..++ +. .. ....++.+.......-....
T Consensus 62 A~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~ 141 (351)
T PRK09112 62 AFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGN 141 (351)
T ss_pred HHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCC
Confidence 9999999854 11111 111 000 0000 00 00 01223332222111111234
Q ss_pred CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHH
Q 005762 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (678)
Q Consensus 391 ~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~ 470 (678)
.-||+|||+|.|... .+++||+.||.- ..+.+||+.++..
T Consensus 142 ~rVviIDeAd~l~~~--------------aanaLLk~LEEp---------------------p~~~~fiLit~~~----- 181 (351)
T PRK09112 142 WRIVIIDPADDMNRN--------------AANAILKTLEEP---------------------PARALFILISHSS----- 181 (351)
T ss_pred ceEEEEEchhhcCHH--------------HHHHHHHHHhcC---------------------CCCceEEEEECCh-----
Confidence 459999999999887 899999999831 1223444433211
Q ss_pred HHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHH
Q 005762 471 ISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNAL 550 (678)
Q Consensus 471 i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L 550 (678)
..+.|.+.+|+ ..+.|.+|+.+++.+++...
T Consensus 182 --------------------------------------------~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~---- 212 (351)
T PRK09112 182 --------------------------------------------GRLLPTIRSRC-QPISLKPLDDDELKKALSHL---- 212 (351)
T ss_pred --------------------------------------------hhccHHHHhhc-cEEEecCCCHHHHHHHHHHh----
Confidence 01456777888 47899999999999998741
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005762 551 GKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (678)
Q Consensus 551 ~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iI 593 (678)
+....++++++..|++.+ +...|...+++
T Consensus 213 -----------~~~~~~~~~~~~~i~~~s---~G~pr~Al~ll 241 (351)
T PRK09112 213 -----------GSSQGSDGEITEALLQRS---KGSVRKALLLL 241 (351)
T ss_pred -----------hcccCCCHHHHHHHHHHc---CCCHHHHHHHH
Confidence 111227788888888765 34455444444
No 173
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.5e-10 Score=126.67 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=107.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 404 (678)
+++.||+||||||||+++-|||++|+..++.++.++.... ..+++++..+. ..+||+|++||.-..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--------~dLr~LL~~t~------~kSIivIEDIDcs~~ 300 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--------SDLRHLLLATP------NKSILLIEDIDCSFD 300 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--------HHHHHHHHhCC------CCcEEEEeecccccc
Confidence 4789999999999999999999999999999999887632 23888887765 458999999998644
Q ss_pred hhccccc--cCC--CchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCC
Q 005762 405 KAESLNI--SRD--VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (678)
Q Consensus 405 ~~~~~~~--~~d--~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~i 480 (678)
.+....- ... ..+.-.++-||..+||--- -+....++|+|+|..+
T Consensus 301 l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwS-----------------scg~ERIivFTTNh~E-------------- 349 (457)
T KOG0743|consen 301 LRERRKKKKENFEGDLSRVTLSGLLNFLDGLWS-----------------SCGDERIIVFTTNHKE-------------- 349 (457)
T ss_pred cccccccccccccCCcceeehHHhhhhhccccc-----------------cCCCceEEEEecCChh--------------
Confidence 2221110 000 1223477889999997322 1223346777777542
Q ss_pred CcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCccccc--ccceEEecCCcCHHHHHHHHhchH-----HHHHHH
Q 005762 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPK-----NALGKQ 553 (678)
Q Consensus 481 gF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~l-----n~L~~q 553 (678)
.|.|.|+. |+|..|.+..-+.+.+..++..++ ..|..+
T Consensus 350 -----------------------------------kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~e 394 (457)
T KOG0743|consen 350 -----------------------------------KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDE 394 (457)
T ss_pred -----------------------------------hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHH
Confidence 16677765 999999999999999988887653 235555
Q ss_pred HHH
Q 005762 554 YKR 556 (678)
Q Consensus 554 ~~~ 556 (678)
+.+
T Consensus 395 ie~ 397 (457)
T KOG0743|consen 395 IER 397 (457)
T ss_pred HHH
Confidence 555
No 174
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.21 E-value=1.6e-10 Score=130.73 Aligned_cols=229 Identities=17% Similarity=0.231 Sum_probs=126.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC--CEEEEeccccccc-c------------cc----ccchHHHHHHHHHhhchhH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQA-G------------YV----GEDVESILYKLLAQAEFNV 386 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~--~fv~id~s~l~~s-g------------yv----G~~~~~~l~~l~~~a~~~v 386 (678)
.+++|+||||+|||++++.|+..+.- .=..++.+.+... | |. ..+....+..-.....+.+
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l 290 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI 290 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHh
Confidence 68999999999999999999987731 1112333222100 0 00 0000111110001224567
Q ss_pred hhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcC
Q 005762 387 EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD 466 (678)
Q Consensus 387 ~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~ 466 (678)
..+++|||||||++.+.+. +|+.|++.||...+.+...+.....+.++.+|.+.|..- +|++.+
T Consensus 291 ~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~p--cG~~~~ 354 (506)
T PRK09862 291 SLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSP--TGHYQG 354 (506)
T ss_pred hhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcc--ceecCC
Confidence 7889999999999998876 999999999966666655554443344445555555421 222211
Q ss_pred HHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHH-----
Q 005762 467 LEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVK----- 541 (678)
Q Consensus 467 Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~----- 541 (678)
..+ .+.......++.+ +..+|++|||..+.+++++.+++.+
T Consensus 355 ------------------~~c------~c~~~~~~~Y~~~----------ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ 400 (506)
T PRK09862 355 ------------------NHN------RCTPEQTLRYLNR----------LSGPFLDRFDLSLEIPLPPPGILSKTVVPG 400 (506)
T ss_pred ------------------CCC------CcCHHHHHHHHhh----------CCHhHHhhccEEEEeCCCCHHHHhcccCCC
Confidence 000 0111222233333 7889999999999999887655433
Q ss_pred -----HHhchHHHHHHHHHHHHhcCCce---------eeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 005762 542 -----VLTEPKNALGKQYKRLFSMNNVK---------LHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 607 (678)
Q Consensus 542 -----Il~~~ln~L~~q~~~~~~~~gv~---------l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~ 607 (678)
|.+....+-..|..+ ....+.. +.+++++.+.+.......+..+|+..+++. +..++.++...
T Consensus 401 ess~~i~~rV~~ar~~q~~r-~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLr--vARTiADL~g~ 477 (506)
T PRK09862 401 ESSATVKQRVMAARERQFKR-QNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLK--VARTIADIDQS 477 (506)
T ss_pred CChHHHHHHHhhHHHHHHHH-HHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHcCC
Confidence 111111111111111 0000111 346777777666554455677898888886 44455555443
No 175
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=5e-10 Score=128.46 Aligned_cols=176 Identities=13% Similarity=0.213 Sum_probs=109.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-----~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
..++|+|++|+|||.|+.+|++.+ +..++.+++.+|... |+..-..+.+ ..|... + ....+|+||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e-l~~al~~~~~-~~f~~~---y--~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE-FINSIRDGKG-DSFRRR---Y--REMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-HHHHHHhccH-HHHHHH---h--hcCCEEEEehhc
Confidence 459999999999999999999987 356778888776521 2111000011 112211 1 123699999999
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCC
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~i 480 (678)
.+..+. ..+..|+.+++.... .+..+|+|++..-
T Consensus 388 ~l~gke------------~tqeeLF~l~N~l~e--------------------~gk~IIITSd~~P-------------- 421 (617)
T PRK14086 388 FLEDKE------------STQEEFFHTFNTLHN--------------------ANKQIVLSSDRPP-------------- 421 (617)
T ss_pred cccCCH------------HHHHHHHHHHHHHHh--------------------cCCCEEEecCCCh--------------
Confidence 886541 245666666652110 0111223333210
Q ss_pred CcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHH
Q 005762 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (678)
Q Consensus 481 gF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~ 558 (678)
.+| ..+.+.|.+||. .++.+.+++.+.+.+||... +
T Consensus 422 -----------------------------~eL--~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk-----------a 459 (617)
T PRK14086 422 -----------------------------KQL--VTLEDRLRNRFEWGLITDVQPPELETRIAILRKK-----------A 459 (617)
T ss_pred -----------------------------Hhh--hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH-----------H
Confidence 000 014556677774 47899999999999998742 1
Q ss_pred hcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 005762 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (678)
Q Consensus 559 ~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~ 601 (678)
. ...+.++++++++|+++. ..+.|.|..+|.++...+.
T Consensus 460 ~--~r~l~l~~eVi~yLa~r~---~rnvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 460 V--QEQLNAPPEVLEFIASRI---SRNIRELEGALIRVTAFAS 497 (617)
T ss_pred H--hcCCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHH
Confidence 1 234679999999999984 5678999999998765443
No 176
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.19 E-value=1.2e-10 Score=121.56 Aligned_cols=231 Identities=19% Similarity=0.264 Sum_probs=139.3
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
.+...|+..|+..++||.-|++.+..+|..|+.. .. ...+-.+-|+|+|||||..+
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n---~~---------------------p~KPLvLSfHG~tGTGKN~V 126 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWAN---PN---------------------PRKPLVLSFHGWTGTGKNYV 126 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC---CC---------------------CCCCeEEEecCCCCCchhHH
Confidence 3466799999999999999999999999866421 11 01246788999999999999
Q ss_pred HHHHHHHhC-----CCEEEE--eccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCC
Q 005762 342 AKTLARHVN-----VPFVIA--DATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRD 414 (678)
Q Consensus 342 AralA~~l~-----~~fv~i--d~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d 414 (678)
++.||+.+. .+||.. -..++-...+ ++..-.++.......+...+.+|+++||+|||.+.
T Consensus 127 a~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~----ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g--------- 193 (344)
T KOG2170|consen 127 AEIIAENLYRGGLRSPFVHHFVATLHFPHASK----IEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG--------- 193 (344)
T ss_pred HHHHHHHHHhccccchhHHHhhhhccCCChHH----HHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh---------
Confidence 999999882 233211 1111111111 12222344444556677788999999999999987
Q ss_pred CchhHHHHHHHHHHhcceeecCCCCcccCCCCCeE-EEecCcceEEecCCCcC--HHHHH----HhhcccCCCCcCcccc
Q 005762 415 VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSI-QMDTKDILFICGGAFVD--LEKTI----SERRQDSSIGFGAPVR 487 (678)
Q Consensus 415 ~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i-~idtsNilfI~tGaf~~--Le~~i----~~r~~~~~igF~~~~~ 487 (678)
+.+.|-..||- +..+ -++.++.+||+-+|..+ +.+++ +....+..+++..-
T Consensus 194 -----Lld~lkpfLdy---------------yp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~-- 251 (344)
T KOG2170|consen 194 -----LLDVLKPFLDY---------------YPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSF-- 251 (344)
T ss_pred -----HHHHHhhhhcc---------------ccccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhh--
Confidence 88888888871 1111 25677778888555433 22222 12222333332221
Q ss_pred cccccCCCchHhHHHHHhhcchhh---hhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCce
Q 005762 488 ANMRAGVTDAAVTSSLLESVESSD---LIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVK 564 (678)
Q Consensus 488 ~~~~~~~~~~~~~~~ll~~v~~ed---Li~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~ 564 (678)
...++.....++ +....+++ ..++|.+|+|.||+..++..-+.- .+. ..+
T Consensus 252 ------------E~~L~~~~~n~~~~Gl~~S~li~--~~lid~fIPFLPLek~hV~~C~r~---el~--------~rg-- 304 (344)
T KOG2170|consen 252 ------------EPALMQSAFNEKAGGLVHSRLIS--NNLIDHFIPFLPLEKRHVRSCIRA---ELR--------KRG-- 304 (344)
T ss_pred ------------hHHHHHhhhccccccccccccch--hhHHhhccCcCcccHHHHHHHHHH---HHH--------hcc--
Confidence 122222221111 11222333 357788999999999988887663 121 223
Q ss_pred eeeCHHHHHHHHHh
Q 005762 565 LHFTEKALRVIAKK 578 (678)
Q Consensus 565 l~~t~eal~~La~~ 578 (678)
+..+++.++.+++.
T Consensus 305 ~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 305 LAPDQDFVERVANS 318 (344)
T ss_pred cccchHHHHHHHHh
Confidence 55666777666654
No 177
>PRK08727 hypothetical protein; Validated
Probab=99.18 E-value=3.8e-10 Score=116.00 Aligned_cols=168 Identities=21% Similarity=0.266 Sum_probs=105.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccch
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 402 (678)
..++|+||+|||||.|+++++..+ +...+.+++.++.. .+...+... ....+|+||||+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~----------~~~~~~~~l------~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG----------RLRDALEAL------EGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh----------hHHHHHHHH------hcCCEEEEeCcccc
Confidence 459999999999999999998776 44555555544321 122222211 12359999999988
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCc
Q 005762 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (678)
Q Consensus 403 ~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF 482 (678)
.... ..+..|+.+++.... ....+|+|++.. ...
T Consensus 106 ~~~~------------~~~~~lf~l~n~~~~--------------------~~~~vI~ts~~~-p~~------------- 139 (233)
T PRK08727 106 AGQR------------EDEVALFDFHNRARA--------------------AGITLLYTARQM-PDG------------- 139 (233)
T ss_pred cCCh------------HHHHHHHHHHHHHHH--------------------cCCeEEEECCCC-hhh-------------
Confidence 6431 144566666652100 011233444311 000
Q ss_pred CcccccccccCCCchHhHHHHHhhcchhhhhhhcCCccccccc--ceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhc
Q 005762 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRF--PILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (678)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~--~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~ 560 (678)
+ ..+.|.+.+|| ..++.|++++.+++.+|+... .. .
T Consensus 140 ---------------------l----------~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~----a~-------~ 177 (233)
T PRK08727 140 ---------------------L----------ALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER----AQ-------R 177 (233)
T ss_pred ---------------------h----------hhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH----HH-------H
Confidence 0 01456667776 457899999999999998841 11 1
Q ss_pred CCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHh
Q 005762 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (678)
Q Consensus 561 ~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~ 602 (678)
..+.++++++++|++++ ....|.+.++++.+...++.
T Consensus 178 --~~l~l~~e~~~~La~~~---~rd~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 178 --RGLALDEAAIDWLLTHG---ERELAGLVALLDRLDRESLA 214 (233)
T ss_pred --cCCCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHH
Confidence 14679999999999985 46688888889987755554
No 178
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.17 E-value=7e-11 Score=132.54 Aligned_cols=176 Identities=16% Similarity=0.299 Sum_probs=109.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-----~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
.+++|+||||||||+|++++++.+ +..++.+++.++... ++..-..... ..|... + ....+|+|||||
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~-~~~~~~---~--~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND-FVNALRNNTM-EEFKEK---Y--RSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHHcCcH-HHHHHH---H--hcCCEEEEehhh
Confidence 569999999999999999999988 455778888776421 1110000001 111110 1 123599999999
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCC
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~i 480 (678)
.+.... ..++.|+..++...- . ...++| +++...
T Consensus 222 ~l~~~~------------~~~~~l~~~~n~l~~----~---------------~~~iii-ts~~~p-------------- 255 (450)
T PRK00149 222 FLAGKE------------RTQEEFFHTFNALHE----A---------------GKQIVL-TSDRPP-------------- 255 (450)
T ss_pred hhcCCH------------HHHHHHHHHHHHHHH----C---------------CCcEEE-ECCCCH--------------
Confidence 886531 245666666652110 0 011222 232110
Q ss_pred CcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHH
Q 005762 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (678)
Q Consensus 481 gF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~ 558 (678)
.+| . ++.+.+.+||. .++.|.+++.+++.+|++.. .
T Consensus 256 -----------------------------~~l-~-~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~----~------- 293 (450)
T PRK00149 256 -----------------------------KEL-P-GLEERLRSRFEWGLTVDIEPPDLETRIAILKKK----A------- 293 (450)
T ss_pred -----------------------------HHH-H-HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH----H-------
Confidence 000 0 13455667775 47999999999999998852 1
Q ss_pred hcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 005762 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (678)
Q Consensus 559 ~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~ 601 (678)
. ...+.++++++++|++.. ...+|.|..+|.++...+.
T Consensus 294 ~--~~~~~l~~e~l~~ia~~~---~~~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 294 E--EEGIDLPDEVLEFIAKNI---TSNVRELEGALNRLIAYAS 331 (450)
T ss_pred H--HcCCCCCHHHHHHHHcCc---CCCHHHHHHHHHHHHHHHH
Confidence 1 124669999999999985 6678999999988765543
No 179
>PRK06893 DNA replication initiation factor; Validated
Probab=99.16 E-value=1.3e-10 Score=119.19 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=49.7
Q ss_pred cccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005762 519 PEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESI 596 (678)
Q Consensus 519 Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~i 596 (678)
|.|.+|+. .++.+.+++.+++.+|+... +. ...+.++++++++|+++. ....|.|..+++.+
T Consensus 144 ~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~-----------a~--~~~l~l~~~v~~~L~~~~---~~d~r~l~~~l~~l 207 (229)
T PRK06893 144 PDLASRLTWGEIYQLNDLTDEQKIIVLQRN-----------AY--QRGIELSDEVANFLLKRL---DRDMHTLFDALDLL 207 (229)
T ss_pred hhHHHHHhcCCeeeCCCCCHHHHHHHHHHH-----------HH--HcCCCCCHHHHHHHHHhc---cCCHHHHHHHHHHH
Confidence 55666654 47899999999999998752 11 124679999999999985 67789999999987
Q ss_pred HH
Q 005762 597 LT 598 (678)
Q Consensus 597 l~ 598 (678)
..
T Consensus 208 ~~ 209 (229)
T PRK06893 208 DK 209 (229)
T ss_pred HH
Confidence 53
No 180
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.16 E-value=3.5e-10 Score=121.89 Aligned_cols=64 Identities=33% Similarity=0.561 Sum_probs=46.2
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC--
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN-- 350 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~-- 350 (678)
+-+|||.+|+++.-..+.. + ..++ ...+.+||.||||||||.||-+||+.|+
T Consensus 24 ~GlVGQ~~AReAagiiv~m----I-k~~K---------------------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDM----I-KEGK---------------------IAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp TTEES-HHHHHHHHHHHHH----H-HTT-----------------------TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred ccccChHHHHHHHHHHHHH----H-hccc---------------------ccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 3489999999988777641 1 1111 1237899999999999999999999996
Q ss_pred CCEEEEeccccc
Q 005762 351 VPFVIADATTLT 362 (678)
Q Consensus 351 ~~fv~id~s~l~ 362 (678)
.||+.++++++.
T Consensus 78 ~PF~~isgSEiy 89 (398)
T PF06068_consen 78 VPFVSISGSEIY 89 (398)
T ss_dssp S-EEEEEGGGG-
T ss_pred CCeeEcccceee
Confidence 799999998765
No 181
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.15 E-value=1.8e-10 Score=127.53 Aligned_cols=176 Identities=18% Similarity=0.309 Sum_probs=110.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-----~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
.+++|+||+|||||+|++++++.+ +..++.+++.++... ++..-....+.. |.. .+ ....+|+|||||
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~~~-~~~---~~--~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND-FVNALRNNKMEE-FKE---KY--RSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH-HHHHHHcCCHHH-HHH---HH--HhCCEEEEehhh
Confidence 568999999999999999999887 467888888765421 110000000001 111 01 123599999999
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCC
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~i 480 (678)
.+... +..+..|+..++.... .+..+|+|++...
T Consensus 210 ~l~~~------------~~~~~~l~~~~n~~~~--------------------~~~~iiits~~~p-------------- 243 (405)
T TIGR00362 210 FLAGK------------ERTQEEFFHTFNALHE--------------------NGKQIVLTSDRPP-------------- 243 (405)
T ss_pred hhcCC------------HHHHHHHHHHHHHHHH--------------------CCCCEEEecCCCH--------------
Confidence 87643 1256667777652110 0112233333110
Q ss_pred CcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHH
Q 005762 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (678)
Q Consensus 481 gF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~ 558 (678)
.++ ..+.+.+.+||. .++.|.+++.+++.+|+... .
T Consensus 244 -----------------------------~~l--~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~----~------- 281 (405)
T TIGR00362 244 -----------------------------KEL--PGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK----A------- 281 (405)
T ss_pred -----------------------------HHH--hhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH----H-------
Confidence 000 014556778886 47999999999999998852 1
Q ss_pred hcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 005762 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (678)
Q Consensus 559 ~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~ 601 (678)
. ...+.++++++++|++.. ..+.|.|..+|.++...+.
T Consensus 282 ~--~~~~~l~~e~l~~ia~~~---~~~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 282 E--EEGLELPDEVLEFIAKNI---RSNVRELEGALNRLLAYAS 319 (405)
T ss_pred H--HcCCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 1 124668999999999874 6678999999998876664
No 182
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.12 E-value=1.9e-10 Score=133.28 Aligned_cols=48 Identities=38% Similarity=0.590 Sum_probs=39.6
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.+-+.|+||+++++.|..++.. ..+++|+||||||||++|+++++.+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~---------------------------------~~~~l~~G~~G~GKttla~~l~~~l 74 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ---------------------------------RRHVMMIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh---------------------------------CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4444589999999998877741 2479999999999999999999877
Q ss_pred C
Q 005762 350 N 350 (678)
Q Consensus 350 ~ 350 (678)
.
T Consensus 75 ~ 75 (637)
T PRK13765 75 P 75 (637)
T ss_pred C
Confidence 4
No 183
>PRK05642 DNA replication initiation factor; Validated
Probab=99.11 E-value=5.6e-10 Score=114.92 Aligned_cols=168 Identities=20% Similarity=0.289 Sum_probs=110.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccch
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 402 (678)
.+++|+||+|||||.|++++++.+ +...+.+++.++... ...+.+.+.. .-+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~-------~~~~~~~~~~---------~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR-------GPELLDNLEQ---------YELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-------hHHHHHhhhh---------CCEEEEechhhh
Confidence 678999999999999999999765 456777777766531 1111122211 148999999987
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCc
Q 005762 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (678)
Q Consensus 403 ~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF 482 (678)
..+. ..+..|+.+++... ..+..+|+|++...
T Consensus 110 ~~~~------------~~~~~Lf~l~n~~~--------------------~~g~~ilits~~~p---------------- 141 (234)
T PRK05642 110 AGKA------------DWEEALFHLFNRLR--------------------DSGRRLLLAASKSP---------------- 141 (234)
T ss_pred cCCh------------HHHHHHHHHHHHHH--------------------hcCCEEEEeCCCCH----------------
Confidence 5431 14566777775210 01112333443210
Q ss_pred CcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhc
Q 005762 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (678)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~ 560 (678)
.++ ..+.|.+.+|+. .++.+.+++.+++.+|++.. . ..
T Consensus 142 ---------------------------~~l--~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k-------a----~~ 181 (234)
T PRK05642 142 ---------------------------REL--PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR-------A----SR 181 (234)
T ss_pred ---------------------------HHc--CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH-------H----HH
Confidence 000 014688889984 57889999999999998731 1 11
Q ss_pred CCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHh
Q 005762 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (678)
Q Consensus 561 ~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~ 602 (678)
. .+.++++++++|+++. ...+|.|..+++.+...++.
T Consensus 182 ~--~~~l~~ev~~~L~~~~---~~d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 182 R--GLHLTDEVGHFILTRG---TRSMSALFDLLERLDQASLQ 218 (234)
T ss_pred c--CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 1 3679999999999985 67789999999998755544
No 184
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.11 E-value=1.5e-09 Score=123.88 Aligned_cols=89 Identities=22% Similarity=0.309 Sum_probs=67.7
Q ss_pred ccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccch
Q 005762 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (678)
Q Consensus 323 ~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 402 (678)
.++..+||+||||-||||||+.||+.+|..++++++++-.. +..+...+..++......=...++.+|+|||||-.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt----~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT----APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc----HHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 35688999999999999999999999999999999998653 23344445454444322212357889999999976
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHh
Q 005762 403 TKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 403 ~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.+. +.+.||.++.
T Consensus 400 ~~~--------------~Vdvilslv~ 412 (877)
T KOG1969|consen 400 PRA--------------AVDVILSLVK 412 (877)
T ss_pred cHH--------------HHHHHHHHHH
Confidence 543 8888999987
No 185
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=1.7e-09 Score=118.32 Aligned_cols=119 Identities=27% Similarity=0.355 Sum_probs=75.0
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
+.|+...+ |+||+.+++.|..++.+. | -+..+||+||+|+||+++
T Consensus 13 ~~P~~~~~-----iiGq~~~~~~L~~~~~~~--r----------------------------l~HA~Lf~Gp~G~GK~~l 57 (365)
T PRK07471 13 PHPRETTA-----LFGHAAAEAALLDAYRSG--R----------------------------LHHAWLIGGPQGIGKATL 57 (365)
T ss_pred CCCCchhh-----ccChHHHHHHHHHHHHcC--C----------------------------CCceEEEECCCCCCHHHH
Confidence 56665543 899999999998887521 0 124599999999999999
Q ss_pred HHHHHHHhCCCE-------E--------EEecc-----------ccc--cccc--cc------cchHHHHHHHHHhhchh
Q 005762 342 AKTLARHVNVPF-------V--------IADAT-----------TLT--QAGY--VG------EDVESILYKLLAQAEFN 385 (678)
Q Consensus 342 AralA~~l~~~f-------v--------~id~s-----------~l~--~sgy--vG------~~~~~~l~~l~~~a~~~ 385 (678)
|..+|+.+.+.- . .-+|. ++. ...+ .+ .. -..++.+.......
T Consensus 58 A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~-VdqiR~l~~~~~~~ 136 (365)
T PRK07471 58 AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVIT-VDEVRELISFFGLT 136 (365)
T ss_pred HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccccccc-HHHHHHHHHHhCcC
Confidence 999999884210 0 00010 000 0000 00 01 12344444433332
Q ss_pred HhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 386 v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
.....+-||+|||+|.+... .+++||+.||.
T Consensus 137 ~~~~~~kVviIDead~m~~~--------------aanaLLK~LEe 167 (365)
T PRK07471 137 AAEGGWRVVIVDTADEMNAN--------------AANALLKVLEE 167 (365)
T ss_pred cccCCCEEEEEechHhcCHH--------------HHHHHHHHHhc
Confidence 23345569999999999876 99999999983
No 186
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.09 E-value=1.2e-09 Score=107.97 Aligned_cols=143 Identities=24% Similarity=0.353 Sum_probs=92.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC------------------------EEEEeccccccccccccchHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQ 381 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~------------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~ 381 (678)
..+||+||+|+|||++|+.+++.+... |..++... +..+ ...++.+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~~---~~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSIK---VDQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcCC---HHHHHHHHHH
Confidence 569999999999999999999988432 22221111 0011 2334444433
Q ss_pred hchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEec
Q 005762 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICG 461 (678)
Q Consensus 382 a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~t 461 (678)
....-..+...||||||+|++... .++.||+.||.- ..+.+||++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~~---------------------~~~~~~il~ 132 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEEP---------------------PPNTLFILI 132 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcCC---------------------CCCeEEEEE
Confidence 322222245679999999999876 899999999831 112344443
Q ss_pred CCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHH
Q 005762 462 GAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVK 541 (678)
Q Consensus 462 Gaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~ 541 (678)
++.. . .+.+.+.+|.. ++.|.+++.+++.+
T Consensus 133 ~~~~--~-----------------------------------------------~l~~~i~sr~~-~~~~~~~~~~~~~~ 162 (188)
T TIGR00678 133 TPSP--E-----------------------------------------------KLLPTIRSRCQ-VLPFPPLSEEALLQ 162 (188)
T ss_pred ECCh--H-----------------------------------------------hChHHHHhhcE-EeeCCCCCHHHHHH
Confidence 3210 0 14455566663 78999999999988
Q ss_pred HHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 005762 542 VLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (678)
Q Consensus 542 Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a 579 (678)
++... + ++++++++|++.+
T Consensus 163 ~l~~~---------------g----i~~~~~~~i~~~~ 181 (188)
T TIGR00678 163 WLIRQ---------------G----ISEEAAELLLALA 181 (188)
T ss_pred HHHHc---------------C----CCHHHHHHHHHHc
Confidence 88741 2 6789999999875
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.06 E-value=1.2e-09 Score=99.96 Aligned_cols=87 Identities=36% Similarity=0.585 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHH-HHHhhchhHhhhcCcEEEEcCcc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYK-LLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~-l~~~a~~~v~~a~~gILfIDEID 400 (678)
..+++++||||||||++++.+++.+ +.+++.+++....... .. ...... .............+.+|+|||++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~lilDe~~ 94 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL-VV---AELFGHFLVRLLFELAEKAKPGVLFIDEID 94 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhh-HH---HHHhhhhhHhHHHHhhccCCCeEEEEeChh
Confidence 3689999999999999999999998 8899999998765321 00 000000 00011111123466899999999
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.+... .+..++..++
T Consensus 95 ~~~~~--------------~~~~~~~~i~ 109 (151)
T cd00009 95 SLSRG--------------AQNALLRVLE 109 (151)
T ss_pred hhhHH--------------HHHHHHHHHH
Confidence 98554 6677888877
No 188
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.05 E-value=2.9e-11 Score=114.09 Aligned_cols=87 Identities=32% Similarity=0.587 Sum_probs=62.4
Q ss_pred hhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEeccccccccccccchHHHHHHHHHhhchh
Q 005762 309 PKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN 385 (678)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~ 385 (678)
+.|..+......++....+|||+|++||||+++|++|+.... .+|+.++|..+. .+++..
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------------~~~l~~---- 67 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------------AELLEQ---- 67 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------------HHHHHH----
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------------HHHHHH----
Confidence 333333334444444568999999999999999999999885 377777777643 123333
Q ss_pred HhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 386 v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
+.+++|||+|||.+... .|..|+..|+
T Consensus 68 ---a~~gtL~l~~i~~L~~~--------------~Q~~L~~~l~ 94 (138)
T PF14532_consen 68 ---AKGGTLYLKNIDRLSPE--------------AQRRLLDLLK 94 (138)
T ss_dssp ---CTTSEEEEECGCCS-HH--------------HHHHHHHHHH
T ss_pred ---cCCCEEEECChHHCCHH--------------HHHHHHHHHH
Confidence 36689999999999987 9999999998
No 189
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.04 E-value=2.7e-09 Score=115.66 Aligned_cols=63 Identities=25% Similarity=0.281 Sum_probs=48.2
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
+++.|+|+++++..|...+...... . ...+..++|+||||+||||+|++|++.++
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g-----~--------------------~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQG-----L--------------------EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhc-----C--------------------CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4446999999999998777533210 0 01236799999999999999999999996
Q ss_pred C-------CEEEEec
Q 005762 351 V-------PFVIADA 358 (678)
Q Consensus 351 ~-------~fv~id~ 358 (678)
. +++.+..
T Consensus 104 ~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 104 EYSKTPEGRRYTFKW 118 (361)
T ss_pred hhcccccCceEEEEe
Confidence 5 8888877
No 190
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.04 E-value=9.3e-10 Score=123.31 Aligned_cols=174 Identities=18% Similarity=0.315 Sum_probs=109.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccch
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 402 (678)
.+++|+||+|+|||+|++++++.+ +..++.+++.++... +...-..... ..|.... ....+|+||||+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~-~~~~l~~~~~-~~f~~~~-----~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH-LVSAIRSGEM-QRFRQFY-----RNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH-HHHHHhcchH-HHHHHHc-----ccCCEEEEcchhhh
Confidence 579999999999999999999877 567777877655421 1000000000 1121111 13469999999987
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCc
Q 005762 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (678)
Q Consensus 403 ~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF 482 (678)
.... ..|+.|+..+..... .+..+|+|++...
T Consensus 215 ~~k~------------~~qeelf~l~N~l~~--------------------~~k~IIlts~~~p---------------- 246 (445)
T PRK12422 215 SGKG------------ATQEEFFHTFNSLHT--------------------EGKLIVISSTCAP---------------- 246 (445)
T ss_pred cCCh------------hhHHHHHHHHHHHHH--------------------CCCcEEEecCCCH----------------
Confidence 6431 256666666542110 0112333443210
Q ss_pred CcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhc
Q 005762 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (678)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~ 560 (678)
.+| ..+.+.+.+||. .++.+.+++.+++..|++... ..
T Consensus 247 ---------------------------~~l--~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~-----------~~ 286 (445)
T PRK12422 247 ---------------------------QDL--KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA-----------EA 286 (445)
T ss_pred ---------------------------HHH--hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH-----------HH
Confidence 000 014556778885 689999999999999987521 11
Q ss_pred CCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 561 ~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
..+.++++++++|+... ..+.|.|...++.++..
T Consensus 287 --~~~~l~~evl~~la~~~---~~dir~L~g~l~~l~~~ 320 (445)
T PRK12422 287 --LSIRIEETALDFLIEAL---SSNVKSLLHALTLLAKR 320 (445)
T ss_pred --cCCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHH
Confidence 23679999999999974 57899999999998643
No 191
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.2e-09 Score=116.21 Aligned_cols=209 Identities=21% Similarity=0.256 Sum_probs=128.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
+.+.|.-++.|...+...++. ..+.|++++|+||||||.+++.+.+.+...
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------------------------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------------------------ERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------------------------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 678888888888876533211 124679999999999999999999999543
Q ss_pred ---EEEEeccccccc--------------cccccchHHHHHHHHHhhchhHhh-hcCcEEEEcCccchhhhhccccccCC
Q 005762 353 ---FVIADATTLTQA--------------GYVGEDVESILYKLLAQAEFNVEA-AQQGMVYIDEVDKITKKAESLNISRD 414 (678)
Q Consensus 353 ---fv~id~s~l~~s--------------gyvG~~~~~~l~~l~~~a~~~v~~-a~~gILfIDEIDkl~~~~~~~~~~~d 414 (678)
++.+||..+... -..|......+..+.+. +.. ...-||+|||+|.|.....
T Consensus 72 ~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~----~~~~~~~~IvvLDEid~L~~~~~------- 140 (366)
T COG1474 72 NVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDN----LSKKGKTVIVILDEVDALVDKDG------- 140 (366)
T ss_pred cCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHH----HHhcCCeEEEEEcchhhhccccc-------
Confidence 899999865532 01112211111111111 111 2345999999999987621
Q ss_pred CchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCC
Q 005762 415 VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGV 494 (678)
Q Consensus 415 ~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~ 494 (678)
+++-.|+++.+. ....+.+|+.+|..++.+.+.
T Consensus 141 ----~~LY~L~r~~~~---------------------~~~~v~vi~i~n~~~~~~~ld---------------------- 173 (366)
T COG1474 141 ----EVLYSLLRAPGE---------------------NKVKVSIIAVSNDDKFLDYLD---------------------- 173 (366)
T ss_pred ----hHHHHHHhhccc---------------------cceeEEEEEEeccHHHHHHhh----------------------
Confidence 133334443321 033456666565433322222
Q ss_pred CchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHH
Q 005762 495 TDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALR 573 (678)
Q Consensus 495 ~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~ 573 (678)
|-+.+++.. .|.|+|++.+|+..|+..- ....| ..-.+++++++
T Consensus 174 ------------------------~rv~s~l~~~~I~F~pY~a~el~~Il~~R-------~~~~~----~~~~~~~~vl~ 218 (366)
T COG1474 174 ------------------------PRVKSSLGPSEIVFPPYTAEELYDILRER-------VEEGF----SAGVIDDDVLK 218 (366)
T ss_pred ------------------------hhhhhccCcceeeeCCCCHHHHHHHHHHH-------HHhhc----cCCCcCccHHH
Confidence 222233322 4799999999999999852 11111 22348999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHhc
Q 005762 574 VIAKKATAKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 574 ~La~~a~~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
.++..+......||-.-.++.....-|-.+
T Consensus 219 lia~~~a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 219 LIAALVAAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence 999987766668888777777766666544
No 192
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.03 E-value=1.5e-09 Score=118.46 Aligned_cols=210 Identities=20% Similarity=0.255 Sum_probs=125.6
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.+...++|||..|..|..... ...-.++|+.|+.||||||++|+||..|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av-------------------------------~P~iggvLI~G~kGtaKSt~~Rala~LL 62 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV-------------------------------DPQIGGALIAGEKGTAKSTLARALADLL 62 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc-------------------------------ccccceeEEecCCCccHHHHHHHHHHhC
Confidence 455669999999987733221 1113789999999999999999999999
Q ss_pred CCCEEEEecc------c--------------------------ccc------cc-cccc-chHHHHHH-HHHhhchhHhh
Q 005762 350 NVPFVIADAT------T--------------------------LTQ------AG-YVGE-DVESILYK-LLAQAEFNVEA 388 (678)
Q Consensus 350 ~~~fv~id~s------~--------------------------l~~------sg-yvG~-~~~~~l~~-l~~~a~~~v~~ 388 (678)
.-.-+.+.|. + +.. .. .+|. ++++.+.. .-.-.++.+..
T Consensus 63 p~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~ 142 (423)
T COG1239 63 PEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR 142 (423)
T ss_pred CccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh
Confidence 3211111320 0 000 00 1221 22222221 11123466778
Q ss_pred hcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHH
Q 005762 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLE 468 (678)
Q Consensus 389 a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le 468 (678)
++.|||||||+..|... +|+.||..++.....|...|-....+.+ +++|.|.|+.
T Consensus 143 AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~hpa~--------fvligTmNPE--- 197 (423)
T COG1239 143 ANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIRHPAR--------FLLIGTMNPE--- 197 (423)
T ss_pred ccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceeeccCcc--------EEEEeecCcc---
Confidence 89999999999999887 9999999999433334444443333333 4455554432
Q ss_pred HHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcC-HHHHHHHHhchH
Q 005762 469 KTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT-EDQLVKVLTEPK 547 (678)
Q Consensus 469 ~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Ls-eeeL~~Il~~~l 547 (678)
...++|.|+.||...|.....+ .++.++|+.+-.
T Consensus 198 ---------------------------------------------eGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 198 ---------------------------------------------EGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred ---------------------------------------------ccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 1128899999999877666654 466666665432
Q ss_pred H------HHHHHHHHHHh--------c-C-CceeeeCHHHHHHHHHhhc
Q 005762 548 N------ALGKQYKRLFS--------M-N-NVKLHFTEKALRVIAKKAT 580 (678)
Q Consensus 548 n------~L~~q~~~~~~--------~-~-gv~l~~t~eal~~La~~a~ 580 (678)
. .+.++|..... . . =.++.++++++.+++..+.
T Consensus 233 ~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~ 281 (423)
T COG1239 233 AFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCA 281 (423)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHH
Confidence 2 13333322111 1 1 1345688888888888765
No 193
>PRK04132 replication factor C small subunit; Provisional
Probab=99.02 E-value=2.4e-09 Score=127.13 Aligned_cols=168 Identities=22% Similarity=0.310 Sum_probs=117.0
Q ss_pred ccccCCcEEEEc--CCCcHHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHHhhch--hHhhhcC
Q 005762 321 VELEKSNVLLMG--PTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF--NVEAAQQ 391 (678)
Q Consensus 321 v~~~~~~iLL~G--PpGtGKT~LAralA~~l-----~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~--~v~~a~~ 391 (678)
+..+..+-+..| |.+.||||+|++||+.+ +.+|+++|+++.. |. ..+++.+..... .+.....
T Consensus 560 ~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-----gi---d~IR~iIk~~a~~~~~~~~~~ 631 (846)
T PRK04132 560 LHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-----GI---NVIREKVKEFARTKPIGGASF 631 (846)
T ss_pred eccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-----cH---HHHHHHHHHHHhcCCcCCCCC
Confidence 344666777889 99999999999999998 4579999999854 22 233333322110 1111133
Q ss_pred cEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHH
Q 005762 392 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTI 471 (678)
Q Consensus 392 gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i 471 (678)
.||||||+|.|+.. .|++|++.||. ...++.||+++|..
T Consensus 632 KVvIIDEaD~Lt~~--------------AQnALLk~lEe---------------------p~~~~~FILi~N~~------ 670 (846)
T PRK04132 632 KIIFLDEADALTQD--------------AQQALRRTMEM---------------------FSSNVRFILSCNYS------ 670 (846)
T ss_pred EEEEEECcccCCHH--------------HHHHHHHHhhC---------------------CCCCeEEEEEeCCh------
Confidence 69999999999876 99999999993 12345666665521
Q ss_pred HhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHH
Q 005762 472 SERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALG 551 (678)
Q Consensus 472 ~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~ 551 (678)
..+.|.+++|+ .++.|.+++.+++.+++.. +.
T Consensus 671 -------------------------------------------~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~----I~ 702 (846)
T PRK04132 671 -------------------------------------------SKIIEPIQSRC-AIFRFRPLRDEDIAKRLRY----IA 702 (846)
T ss_pred -------------------------------------------hhCchHHhhhc-eEEeCCCCCHHHHHHHHHH----HH
Confidence 01556677776 4579999999999888764 21
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 552 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 552 ~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+ ..+ +.++++++..|+..+ +.+.|..-+.+|.+.
T Consensus 703 ~-------~Eg--i~i~~e~L~~Ia~~s---~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 703 E-------NEG--LELTEEGLQAILYIA---EGDMRRAINILQAAA 736 (846)
T ss_pred H-------hcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 1 223 558899999999986 666787777777654
No 194
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.02 E-value=2.2e-09 Score=120.33 Aligned_cols=174 Identities=18% Similarity=0.289 Sum_probs=105.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-----~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
.+++|+||+|+|||+|++++++.+ +..++.+++.++... +...-..+.+.. |... . .....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~-~~~~~~~~~~~~-f~~~---~-~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKLNE-FREK---Y-RKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHhcccHHH-HHHH---H-HhcCCEEEEechh
Confidence 569999999999999999999886 346777787765421 100000000111 1110 0 0134699999999
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCC--cCHHHHHHhhcccC
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF--VDLEKTISERRQDS 478 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf--~~Le~~i~~r~~~~ 478 (678)
.+.... ..|..|+..+..... ... .+|++++. .++..
T Consensus 205 ~l~~~~------------~~q~elf~~~n~l~~-------------------~~k-~iIitsd~~p~~l~~--------- 243 (440)
T PRK14088 205 FLIGKT------------GVQTELFHTFNELHD-------------------SGK-QIVICSDREPQKLSE--------- 243 (440)
T ss_pred hhcCcH------------HHHHHHHHHHHHHHH-------------------cCC-eEEEECCCCHHHHHH---------
Confidence 875431 145566666642110 001 12222321 11110
Q ss_pred CCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHH
Q 005762 479 SIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKR 556 (678)
Q Consensus 479 ~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~ 556 (678)
+.+.+.+||. .++.+.+++.+++..|++..
T Consensus 244 --------------------------------------l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~---------- 275 (440)
T PRK14088 244 --------------------------------------FQDRLVSRFQMGLVAKLEPPDEETRKKIARKM---------- 275 (440)
T ss_pred --------------------------------------HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH----------
Confidence 2334455664 37899999999999998742
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 005762 557 LFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (678)
Q Consensus 557 ~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a 600 (678)
+.. ..+.++++++++|+++. ..++|.|..+|.++...+
T Consensus 276 -~~~--~~~~l~~ev~~~Ia~~~---~~~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 276 -LEI--EHGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYK 313 (440)
T ss_pred -HHh--cCCCCCHHHHHHHHhcc---ccCHHHHHHHHHHHHHHH
Confidence 111 24568999999999985 668899999998876544
No 195
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.01 E-value=9.1e-09 Score=105.95 Aligned_cols=173 Identities=22% Similarity=0.350 Sum_probs=108.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CC
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NV 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~ 351 (678)
++|.|..|+.|......... + .+..|+||+|+.|||||++++++...+ +.
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~-----G----------------------~pannvLL~G~rGtGKSSlVkall~~y~~~GL 81 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQ-----G----------------------LPANNVLLWGARGTGKSSLVKALLNEYADQGL 81 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHc-----C----------------------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCc
Confidence 79999999998776643311 1 134899999999999999999999877 66
Q ss_pred CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcc
Q 005762 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (678)
Q Consensus 352 ~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~ 431 (678)
.+|.++..++.. -..+...+...+ .+=|||+|++. +... +.-...|..+|||.
T Consensus 82 RlIev~k~~L~~--------l~~l~~~l~~~~------~kFIlf~DDLs-Fe~~------------d~~yk~LKs~LeGg 134 (249)
T PF05673_consen 82 RLIEVSKEDLGD--------LPELLDLLRDRP------YKFILFCDDLS-FEEG------------DTEYKALKSVLEGG 134 (249)
T ss_pred eEEEECHHHhcc--------HHHHHHHHhcCC------CCEEEEecCCC-CCCC------------cHHHHHHHHHhcCc
Confidence 888888887763 122333333222 23599999854 2221 12567889999975
Q ss_pred eeecCCCCcccCCCCCeEEEecCcceEEecCCCcCH-HHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchh
Q 005762 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (678)
Q Consensus 432 ~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~L-e~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~e 510 (678)
+.. .-.|+++.+|+|--.| .+...++.. .-. +.+.+.
T Consensus 135 le~-----------------~P~NvliyATSNRRHLv~E~~~d~~~----~~~---------------------~eih~~ 172 (249)
T PF05673_consen 135 LEA-----------------RPDNVLIYATSNRRHLVPESFSDRED----IQD---------------------DEIHPS 172 (249)
T ss_pred ccc-----------------CCCcEEEEEecchhhccchhhhhccC----CCc---------------------cccCcc
Confidence 432 2346666666664332 111111110 000 011112
Q ss_pred hhhhhcCCcccccccceEEecCCcCHHHHHHHHhc
Q 005762 511 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 511 dLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
|-++..+ .|..||...+.|.+++.++..+|+..
T Consensus 173 d~~eEkl--SLsDRFGL~l~F~~~~q~~YL~IV~~ 205 (249)
T PF05673_consen 173 DTIEEKL--SLSDRFGLWLSFYPPDQEEYLAIVRH 205 (249)
T ss_pred hHHHHHH--hHHHhCCcEEEecCCCHHHHHHHHHH
Confidence 2222211 36689999999999999999999885
No 196
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.00 E-value=2.3e-09 Score=120.41 Aligned_cols=180 Identities=16% Similarity=0.264 Sum_probs=112.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEeccccccccccccchH--HHHHHHHHhhchhHhhhcCcEEEEcC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVE--SILYKLLAQAEFNVEAAQQGMVYIDE 398 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-----~~~fv~id~s~l~~sgyvG~~~~--~~l~~l~~~a~~~v~~a~~gILfIDE 398 (678)
.+++|+|++|+|||.|++++++.+ +..++.+++.++... +...-.. ..+....... ...-+|+|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~-~~~~l~~~~~~~~~~~~~~------~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK-AVDILQKTHKEIEQFKNEI------CQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHHHhhhHHHHHHHHh------ccCCEEEEec
Confidence 569999999999999999999866 356777877766521 1100000 0111111110 1235999999
Q ss_pred ccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccC
Q 005762 399 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDS 478 (678)
Q Consensus 399 IDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~ 478 (678)
|+.+..+ +..++.|+.++..... ... .+|+|++...
T Consensus 215 iq~l~~k------------~~~~e~lf~l~N~~~~-------------------~~k-~iIltsd~~P------------ 250 (450)
T PRK14087 215 VQFLSYK------------EKTNEIFFTIFNNFIE-------------------NDK-QLFFSSDKSP------------ 250 (450)
T ss_pred cccccCC------------HHHHHHHHHHHHHHHH-------------------cCC-cEEEECCCCH------------
Confidence 9987643 1256667776652110 000 1233333110
Q ss_pred CCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHH
Q 005762 479 SIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKR 556 (678)
Q Consensus 479 ~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~ 556 (678)
..+ ..+.+.+.+||. .++.+.+++.+++.+|+...
T Consensus 251 -----------------------~~l----------~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~---------- 287 (450)
T PRK14087 251 -----------------------ELL----------NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE---------- 287 (450)
T ss_pred -----------------------HHH----------hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH----------
Confidence 000 124456667775 48899999999999998852
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhc
Q 005762 557 LFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 557 ~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
+...+..+.++++++++|++.. ...+|.|..++.+++..+...
T Consensus 288 -~~~~gl~~~l~~evl~~Ia~~~---~gd~R~L~gaL~~l~~~a~~~ 330 (450)
T PRK14087 288 -IKNQNIKQEVTEEAINFISNYY---SDDVRKIKGSVSRLNFWSQQN 330 (450)
T ss_pred -HHhcCCCCCCCHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHhcc
Confidence 1122444579999999999986 678999999999988655543
No 197
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.99 E-value=1.1e-09 Score=111.78 Aligned_cols=175 Identities=19% Similarity=0.336 Sum_probs=104.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-----~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
..++|+||+|+|||.|.+++++.+ +..++.+++.++... +...-....+..+.... ..--+|+||+|+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~~~~~~~~~~~~~------~~~DlL~iDDi~ 107 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADALRDGEIEEFKDRL------RSADLLIIDDIQ 107 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHHHTTSHHHHHHHH------CTSSEEEEETGG
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHHHcccchhhhhhh------hcCCEEEEecch
Confidence 468999999999999999999876 457888888776521 10000000011111111 123599999999
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCC
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~i 480 (678)
.+..+ +..|..|+.+++.... . +-.+|+|+...
T Consensus 108 ~l~~~------------~~~q~~lf~l~n~~~~-------------------~-~k~li~ts~~~--------------- 140 (219)
T PF00308_consen 108 FLAGK------------QRTQEELFHLFNRLIE-------------------S-GKQLILTSDRP--------------- 140 (219)
T ss_dssp GGTTH------------HHHHHHHHHHHHHHHH-------------------T-TSEEEEEESS----------------
T ss_pred hhcCc------------hHHHHHHHHHHHHHHh-------------------h-CCeEEEEeCCC---------------
Confidence 98764 1267888888763211 0 11223333211
Q ss_pred CcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce--EEecCCcCHHHHHHHHhchHHHHHHHHHHHH
Q 005762 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI--LVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (678)
Q Consensus 481 gF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~--iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~ 558 (678)
|.+| ..+.|.|.+||.- ++.+.+++.+++.+|+... .
T Consensus 141 ----------------------------P~~l--~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~-----------a 179 (219)
T PF00308_consen 141 ----------------------------PSEL--SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK-----------A 179 (219)
T ss_dssp ----------------------------TTTT--TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHH-----------H
T ss_pred ----------------------------Cccc--cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH-----------H
Confidence 0111 0255666777764 7999999999999998852 1
Q ss_pred hcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 005762 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (678)
Q Consensus 559 ~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a 600 (678)
...+ +.++++++++|+++. ..+.|.|..+|.++...+
T Consensus 180 ~~~~--~~l~~~v~~~l~~~~---~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 180 KERG--IELPEEVIEYLARRF---RRDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHTT----S-HHHHHHHHHHT---TSSHHHHHHHHHHHHHHH
T ss_pred HHhC--CCCcHHHHHHHHHhh---cCCHHHHHHHHHHHHHHh
Confidence 1223 449999999999985 667899999999877543
No 198
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.98 E-value=5.2e-09 Score=120.62 Aligned_cols=195 Identities=11% Similarity=0.103 Sum_probs=125.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC--CCEEEEecccccccccccc-chHHHHHHHH-HhhchhHhhhcCcEEEEcCccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVIADATTLTQAGYVGE-DVESILYKLL-AQAEFNVEAAQQGMVYIDEVDK 401 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~--~~fv~id~s~l~~sgyvG~-~~~~~l~~l~-~~a~~~v~~a~~gILfIDEIDk 401 (678)
.+|||.|+.||+||++++.++..+- .||+.+-.+.-. ...+|. +++..+..-- ...++.+..+++|||||||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~-~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIAD-DRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcH-HHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 6899999999999999999999985 488765443211 123332 2222221111 1345667788999999999999
Q ss_pred hhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCC
Q 005762 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (678)
Q Consensus 402 l~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ig 481 (678)
+.++ +++.|++.||...++|...|.....+..+++|.+.|- ..
T Consensus 105 ~~~~--------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~--------~~--------------- 147 (584)
T PRK13406 105 LEPG--------------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEG--------AE--------------- 147 (584)
T ss_pred CCHH--------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCC--------hh---------------
Confidence 9887 9999999999777777666555544444444432111 00
Q ss_pred cCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcC
Q 005762 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMN 561 (678)
Q Consensus 482 F~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~ 561 (678)
..+.+.+.|+.||+..|.+..++..+..+.... ...+. ..++++.
T Consensus 148 -------------------------------~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~-~~~I~-~AR~rl~-- 192 (584)
T PRK13406 148 -------------------------------EDERAPAALADRLAFHLDLDGLALRDAREIPID-ADDIA-AARARLP-- 192 (584)
T ss_pred -------------------------------cccCCCHHhHhheEEEEEcCCCChHHhcccCCC-HHHHH-HHHHHHc--
Confidence 013478889999999999999998776532111 11222 2333331
Q ss_pred CceeeeCHHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 005762 562 NVKLHFTEKALRVIAKKATAKNT-GARGLRAILES 595 (678)
Q Consensus 562 gv~l~~t~eal~~La~~a~~~~~-GAR~Lr~iIE~ 595 (678)
.+.++++.+++|++.+...+. +.|....++.-
T Consensus 193 --~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llra 225 (584)
T PRK13406 193 --AVGPPPEAIAALCAAAAALGIASLRAPLLALRA 225 (584)
T ss_pred --cCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 456889999988876654443 55665555543
No 199
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=2e-08 Score=107.86 Aligned_cols=47 Identities=30% Similarity=0.428 Sum_probs=39.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
.|+||+.+++.|..++... | -+..+||+||+|+||+++|+++|+.+.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~--r----------------------------l~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQN--R----------------------------IAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred HhCCHHHHHHHHHHHHHhC--C----------------------------CCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4899999999998888521 0 136799999999999999999999883
No 200
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.95 E-value=5.1e-08 Score=101.08 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=51.6
Q ss_pred ccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 520 EFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 520 efl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
.+..|+...+.+++|+.+|+.+++... .++. .......|++++++.|++.+ ....|.+..+...++..
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~----l~~~-----g~~~~~~~~~~~~~~i~~~s---~G~p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHR----LERA-----GNRDAPVFSEGAFDAIHRFS---RGIPRLINILCDRLLLS 245 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHH----HHHc-----CCCCCCCcCHHHHHHHHHHc---CCcccHHHHHHHHHHHH
Confidence 456777778999999999999887742 1111 01223458999999999986 44467788888887777
Q ss_pred HHhc
Q 005762 600 AMYE 603 (678)
Q Consensus 600 a~~~ 603 (678)
+..+
T Consensus 246 a~~~ 249 (269)
T TIGR03015 246 AFLE 249 (269)
T ss_pred HHHc
Confidence 7654
No 201
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.95 E-value=4.6e-09 Score=111.34 Aligned_cols=86 Identities=30% Similarity=0.378 Sum_probs=60.8
Q ss_pred Cc-EEEEcCCCcHHHHHHHHHHHHhC------------------------CCEEEEeccccccccccccchHHHHHHHHH
Q 005762 326 SN-VLLMGPTGSGKTLLAKTLARHVN------------------------VPFVIADATTLTQAGYVGEDVESILYKLLA 380 (678)
Q Consensus 326 ~~-iLL~GPpGtGKT~LAralA~~l~------------------------~~fv~id~s~l~~sgyvG~~~~~~l~~l~~ 380 (678)
.| +||+||||+|||++|.++|+.+. -.|++++.++..... -....++++..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~----i~~~~vr~~~~ 99 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID----IIVEQVRELAE 99 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc----chHHHHHHHHH
Confidence 45 99999999999999999999886 366777777654211 01233444433
Q ss_pred hhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 381 ~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.....-.....-||+|||+|.++.. ++++|++.||
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lE 134 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLE 134 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhc
Confidence 3222111234569999999999986 9999999998
No 202
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.94 E-value=2.6e-09 Score=123.72 Aligned_cols=256 Identities=18% Similarity=0.237 Sum_probs=143.5
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.+-..|.|.+.+|++|.-.+.- +..+... .. .--.-..||||.|.||||||.|.+.+++.+
T Consensus 283 SiaPsIyG~e~VKkAilLqLfg--------Gv~k~~~----------~g-~~iRGDInILLvGDPgtaKSqlLk~v~~~a 343 (682)
T COG1241 283 SIAPSIYGHEDVKKAILLQLFG--------GVKKNLP----------DG-TRIRGDIHILLVGDPGTAKSQLLKYVAKLA 343 (682)
T ss_pred HhcccccCcHHHHHHHHHHhcC--------CCcccCC----------CC-cccccceeEEEcCCCchhHHHHHHHHHhhC
Confidence 3445589999999988666531 1111000 00 001124799999999999999999999998
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 350 ~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
-.-.+ ++...-...|....-.....+.-+.-..+.+..+.+||..|||+||+... ...+|.++||
T Consensus 344 Pr~vy-tsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~aihEaME 408 (682)
T COG1241 344 PRGVY-TSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAIHEAME 408 (682)
T ss_pred CceEE-EccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHHHHHHH
Confidence 44332 22221111111111101101111111223455678999999999999876 8899999999
Q ss_pred cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcch
Q 005762 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (678)
Q Consensus 430 g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~ 509 (678)
-..+++...| .+..--...-++++.|+. |+.... ...+.+++.
T Consensus 409 QQtIsIaKAG--------I~atLnARcsvLAAaNP~----------------~Gryd~------------~~~~~enI~- 451 (682)
T COG1241 409 QQTISIAKAG--------ITATLNARCSVLAAANPK----------------FGRYDP------------KKTVAENIN- 451 (682)
T ss_pred hcEeeecccc--------eeeecchhhhhhhhhCCC----------------CCcCCC------------CCCHHHhcC-
Confidence 7666664333 111111233444444432 111100 011223333
Q ss_pred hhhhhhcCCcccccccceEEecCC-cCHHHHHHHHhchHHH------------------------HHHHHHHHHhcCCce
Q 005762 510 SDLIAYGLIPEFVGRFPILVSLTA-LTEDQLVKVLTEPKNA------------------------LGKQYKRLFSMNNVK 564 (678)
Q Consensus 510 edLi~~g~~Pefl~R~~~iv~f~~-LseeeL~~Il~~~ln~------------------------L~~q~~~~~~~~gv~ 564 (678)
|.+.|++|||.++.+.+ .+++.-..|..+.++. +++.|...- ...+.
T Consensus 452 -------l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YA-R~~v~ 523 (682)
T COG1241 452 -------LPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYA-RKNVT 523 (682)
T ss_pred -------CChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHH-hccCC
Confidence 88899999999655544 5544344444433222 355555533 33466
Q ss_pred eeeCHHHHHHHHHhhcC-C------------CCCHHHHHHHHHHHHHHHHhcC
Q 005762 565 LHFTEKALRVIAKKATA-K------------NTGARGLRAILESILTEAMYEI 604 (678)
Q Consensus 565 l~~t~eal~~La~~a~~-~------------~~GAR~Lr~iIE~il~~a~~~~ 604 (678)
..++++|.+.|.++-.. + ..-+|+|.++|.-..+.|-..+
T Consensus 524 P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rL 576 (682)
T COG1241 524 PVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRL 576 (682)
T ss_pred cccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhc
Confidence 78999999999886321 1 1348999999875555554443
No 203
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=9.5e-09 Score=109.98 Aligned_cols=106 Identities=20% Similarity=0.321 Sum_probs=70.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
|+||+.+++.|..++... . -+..+||+||.|+|||++|+.+|+.+.+.
T Consensus 6 i~g~~~~~~~l~~~~~~~-------~-----------------------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~ 55 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKN-------R-----------------------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQ 55 (313)
T ss_pred ccCcHHHHHHHHHHHHcC-------C-----------------------CCceEEeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 899999999998877410 0 12457999999999999999999987432
Q ss_pred ------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHH
Q 005762 353 ------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (678)
Q Consensus 353 ------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~ 426 (678)
|..+... +.... . ...++++.......-..+..-|++||++|+++.. .+++||+
T Consensus 56 ~~~h~D~~~~~~~---~~~~i--~-v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naLLK 115 (313)
T PRK05564 56 QREYVDIIEFKPI---NKKSI--G-VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAFLK 115 (313)
T ss_pred CCCCCCeEEeccc---cCCCC--C-HHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHHHH
Confidence 2222211 00001 1 2234554443221112245569999999999876 8999999
Q ss_pred HHhc
Q 005762 427 MLEG 430 (678)
Q Consensus 427 ~LEg 430 (678)
.||.
T Consensus 116 ~LEe 119 (313)
T PRK05564 116 TIEE 119 (313)
T ss_pred HhcC
Confidence 9994
No 204
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=6.8e-09 Score=112.13 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=67.8
Q ss_pred ccC-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 275 VIG-QEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 275 VvG-Qe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
|+| |+.+++.|..++... . -+..+||+||+|+|||++|+.+|+.+..+-
T Consensus 7 i~~~q~~~~~~L~~~~~~~-------~-----------------------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~ 56 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-------R-----------------------LSHAYLFEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-------C-----------------------CCceEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 677 999999988877410 0 124579999999999999999999874320
Q ss_pred --EE------Eecc--------ccccccccccch-HHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCc
Q 005762 354 --VI------ADAT--------TLTQAGYVGEDV-ESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (678)
Q Consensus 354 --v~------id~s--------~l~~sgyvG~~~-~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s 416 (678)
-. -+|. ++.-....|... -..++++.......-..+..-|++|||+|++...
T Consensus 57 ~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~----------- 125 (329)
T PRK08058 57 RNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS----------- 125 (329)
T ss_pred CCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-----------
Confidence 00 0000 110000001110 1234444332221111234569999999999887
Q ss_pred hhHHHHHHHHHHhc
Q 005762 417 GEGVQQALLKMLEG 430 (678)
Q Consensus 417 ~~~vq~~LL~~LEg 430 (678)
.+++||+.||.
T Consensus 126 ---a~NaLLK~LEE 136 (329)
T PRK08058 126 ---AANSLLKFLEE 136 (329)
T ss_pred ---HHHHHHHHhcC
Confidence 99999999994
No 205
>PRK06620 hypothetical protein; Validated
Probab=98.92 E-value=7.8e-09 Score=105.19 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=48.5
Q ss_pred cccccccce--EEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005762 519 PEFVGRFPI--LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESI 596 (678)
Q Consensus 519 Pefl~R~~~--iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~i 596 (678)
|.|++|+.- ++.+.+++.+++..++... +.. ..+.++++++++|+++. ...+|.|.++++.+
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~-----------~~~--~~l~l~~ev~~~L~~~~---~~d~r~l~~~l~~l 193 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKH-----------FSI--SSVTISRQIIDFLLVNL---PREYSKIIEILENI 193 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHH-----------HHH--cCCCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 556666652 6899999999988887642 111 23669999999999986 77799999999985
Q ss_pred H
Q 005762 597 L 597 (678)
Q Consensus 597 l 597 (678)
-
T Consensus 194 ~ 194 (214)
T PRK06620 194 N 194 (214)
T ss_pred H
Confidence 4
No 206
>PRK09087 hypothetical protein; Validated
Probab=98.84 E-value=1.4e-08 Score=104.24 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=52.0
Q ss_pred CCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005762 517 LIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (678)
Q Consensus 517 ~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE 594 (678)
+.|.|++|+. .++.+.+++.+++.+|++... .. ..+.++++++++|+++. ....|.|..++.
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~-----------~~--~~~~l~~ev~~~La~~~---~r~~~~l~~~l~ 197 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF-----------AD--RQLYVDPHVVYYLVSRM---ERSLFAAQTIVD 197 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHHHHHH-----------HH--cCCCCCHHHHHHHHHHh---hhhHHHHHHHHH
Confidence 3577788885 589999999999999988521 11 24679999999999986 455677777777
Q ss_pred HHHHHHHh
Q 005762 595 SILTEAMY 602 (678)
Q Consensus 595 ~il~~a~~ 602 (678)
++-..++.
T Consensus 198 ~L~~~~~~ 205 (226)
T PRK09087 198 RLDRLALE 205 (226)
T ss_pred HHHHHHHH
Confidence 76655544
No 207
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4.2e-08 Score=111.85 Aligned_cols=195 Identities=24% Similarity=0.301 Sum_probs=121.3
Q ss_pred ccCCcEEEEcCCCcHHHHHHHHHHHHhC----CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcC
Q 005762 323 LEKSNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (678)
Q Consensus 323 ~~~~~iLL~GPpGtGKT~LAralA~~l~----~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 398 (678)
+...+|||.||+|+|||.|++++++++. ..+..++|+.+.... -+.+.+.+...|..+. ...|+||+||+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~----~~~PSiIvLDd 502 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEAL----WYAPSIIVLDD 502 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHHH----hhCCcEEEEcc
Confidence 4568999999999999999999999884 356789999887432 1222334444554443 35899999999
Q ss_pred ccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccC
Q 005762 399 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDS 478 (678)
Q Consensus 399 IDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~ 478 (678)
+|.|.......+..-++-.+.....|-+++.... -+.+.+.||+++..- . .+
T Consensus 503 ld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~------------------~~~~~ia~Iat~qe~--q-tl------- 554 (952)
T KOG0735|consen 503 LDCLASASSNENGQDGVVSERLAAFLNQVIKIYL------------------KRNRKIAVIATGQEL--Q-TL------- 554 (952)
T ss_pred hhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH------------------ccCcEEEEEEechhh--h-hc-------
Confidence 9999873222222222111222222223333100 011225677776511 0 00
Q ss_pred CCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHH
Q 005762 479 SIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (678)
Q Consensus 479 ~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~ 558 (678)
-. -| +.| .+|+.++.++++...+..+||+.. +. +.
T Consensus 555 -------------------------~~-----~L----~s~---~~Fq~~~~L~ap~~~~R~~IL~~~---~s----~~- 589 (952)
T KOG0735|consen 555 -------------------------NP-----LL----VSP---LLFQIVIALPAPAVTRRKEILTTI---FS----KN- 589 (952)
T ss_pred -------------------------Ch-----hh----cCc---cceEEEEecCCcchhHHHHHHHHH---HH----hh-
Confidence 00 00 122 288999999999999999999863 11 11
Q ss_pred hcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhc
Q 005762 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 559 ~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
.+..+.+-++.|+..+ .++-++.|.-++++++-.++.+
T Consensus 590 -----~~~~~~~dLd~ls~~T--EGy~~~DL~ifVeRai~~a~le 627 (952)
T KOG0735|consen 590 -----LSDITMDDLDFLSVKT--EGYLATDLVIFVERAIHEAFLE 627 (952)
T ss_pred -----hhhhhhHHHHHHHHhc--CCccchhHHHHHHHHHHHHHHH
Confidence 1234556677777765 5888999999999999888843
No 208
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.82 E-value=8.7e-10 Score=119.16 Aligned_cols=138 Identities=21% Similarity=0.289 Sum_probs=76.4
Q ss_pred HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHH
Q 005762 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 267 l~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA 346 (678)
|.+.+-..|+|.+.+|..|.-.+... ..+. .....-.....|+||+|.||||||.|.+.++
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~-------~~~~------------~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~ 78 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGG-------VEKN------------DPDGTRIRGNIHILLVGDPGTGKSQLLKYVA 78 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT---------SCC------------CCT-TEE--S--EEEECSCHHCHHHHHHCCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhc-------cccc------------cccccccccccceeeccchhhhHHHHHHHHH
Confidence 45556667999999998875544210 0000 0000012235799999999999999999887
Q ss_pred HHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHH
Q 005762 347 RHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (678)
Q Consensus 347 ~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~ 426 (678)
+.... -+.++....+..|....-.......-+.-..+.+..+.+||++|||+|++... ....|++
T Consensus 79 ~~~pr-~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~--------------~~~~l~e 143 (331)
T PF00493_consen 79 KLAPR-SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED--------------DRDALHE 143 (331)
T ss_dssp CT-SS-EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH--------------HHHHHHH
T ss_pred hhCCc-eEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch--------------HHHHHHH
Confidence 76633 34455544333332111100000000011123345568899999999999876 8899999
Q ss_pred HHhcceeecCCC
Q 005762 427 MLEGTIVNVPEK 438 (678)
Q Consensus 427 ~LEg~~v~v~~~ 438 (678)
+||...++|...
T Consensus 144 aMEqq~isi~ka 155 (331)
T PF00493_consen 144 AMEQQTISIAKA 155 (331)
T ss_dssp HHHCSCEEECTS
T ss_pred HHHcCeeccchh
Confidence 999766776443
No 209
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.80 E-value=5.4e-08 Score=94.78 Aligned_cols=105 Identities=29% Similarity=0.421 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC-----
Q 005762 277 GQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV----- 351 (678)
Q Consensus 277 GQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~----- 351 (678)
||+++++.|..++.+. . -+..+||+||+|+||+++|+.+|+.+..
T Consensus 1 gq~~~~~~L~~~~~~~-------~-----------------------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~ 50 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-------R-----------------------LPHALLFHGPSGSGKKTLALAFARALLCSNPNE 50 (162)
T ss_dssp S-HHHHHHHHHHHHCT-------C-------------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CT
T ss_pred CcHHHHHHHHHHHHcC-------C-----------------------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCC
Confidence 8999999888877411 0 1245899999999999999999988832
Q ss_pred ------------------CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccC
Q 005762 352 ------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (678)
Q Consensus 352 ------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~ 413 (678)
.++.++...... .++ ...++++.......-..+..-|++|||+|+|...
T Consensus 51 ~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~--~i~---i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-------- 117 (162)
T PF13177_consen 51 DPCGECRSCRRIEEGNHPDFIIIKPDKKKK--SIK---IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-------- 117 (162)
T ss_dssp T--SSSHHHHHHHTT-CTTEEEEETTTSSS--SBS---HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH--------
T ss_pred CCCCCCHHHHHHHhccCcceEEEecccccc--hhh---HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH--------
Confidence 233333222100 011 2345555544433222345669999999999987
Q ss_pred CCchhHHHHHHHHHHhc
Q 005762 414 DVSGEGVQQALLKMLEG 430 (678)
Q Consensus 414 d~s~~~vq~~LL~~LEg 430 (678)
++++||+.||.
T Consensus 118 ------a~NaLLK~LEe 128 (162)
T PF13177_consen 118 ------AQNALLKTLEE 128 (162)
T ss_dssp ------HHHHHHHHHHS
T ss_pred ------HHHHHHHHhcC
Confidence 99999999994
No 210
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.79 E-value=1.1e-07 Score=99.24 Aligned_cols=63 Identities=19% Similarity=0.388 Sum_probs=47.1
Q ss_pred hhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005762 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (678)
Q Consensus 514 ~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iI 593 (678)
..|+.++|+.|+ .||...+++++++.+|+..- +.-..+.++++++..|+...- -+.||-.+
T Consensus 348 PhGip~dllDRl-~Iirt~~y~~~e~r~Ii~~R-------------a~~E~l~~~e~a~~~l~~~gt-----~tsLRy~v 408 (456)
T KOG1942|consen 348 PHGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIR-------------AQVEGLQVEEEALDLLAEIGT-----STSLRYAV 408 (456)
T ss_pred CCCCCHHHhhhe-eEEeeccCCHHHHHHHHHHH-------------HhhhcceecHHHHHHHHhhcc-----chhHHHHH
Confidence 356888999998 45688899999999998741 123356799999999998742 35677777
Q ss_pred HH
Q 005762 594 ES 595 (678)
Q Consensus 594 E~ 595 (678)
+-
T Consensus 409 qL 410 (456)
T KOG1942|consen 409 QL 410 (456)
T ss_pred Hh
Confidence 64
No 211
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.79 E-value=6.7e-08 Score=109.21 Aligned_cols=252 Identities=20% Similarity=0.291 Sum_probs=143.7
Q ss_pred HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHH
Q 005762 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 267 l~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA 346 (678)
|...|-.-|.|.+.+|.-|.-.+. .+.++..+ ...+ -.-.-||++.|.|||||+-+.++.+
T Consensus 339 lv~Sl~PsIyGhe~VK~GilL~Lf--------GGv~K~a~----------eg~~-lRGDinv~iVGDPgt~KSQfLk~v~ 399 (764)
T KOG0480|consen 339 LVNSLFPSIYGHELVKAGILLSLF--------GGVHKSAG----------EGTS-LRGDINVCIVGDPGTGKSQFLKAVC 399 (764)
T ss_pred HHHhhCccccchHHHHhhHHHHHh--------CCccccCC----------CCcc-ccCCceEEEeCCCCccHHHHHHHHh
Confidence 445566668999999998865553 11111111 0001 1125799999999999999999999
Q ss_pred HHhCCCEEE-Eecc---ccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHH
Q 005762 347 RHVNVPFVI-ADAT---TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (678)
Q Consensus 347 ~~l~~~fv~-id~s---~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~ 422 (678)
.++-.-.+. -.++ .|+.+ .+-.. + ..-|.-.-+.+-.+.+||-.|||+||+.-+ -|.
T Consensus 400 ~fsPR~vYtsGkaSSaAGLTaa-VvkD~-e---sgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqv 460 (764)
T KOG0480|consen 400 AFSPRSVYTSGKASSAAGLTAA-VVKDE-E---SGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQV 460 (764)
T ss_pred ccCCcceEecCcccccccceEE-EEecC-C---CCceeeecCcEEEccCceEEechhcccChH--------------hHH
Confidence 988554332 1222 22211 00000 0 001111112233467899999999999765 689
Q ss_pred HHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHH
Q 005762 423 ALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSS 502 (678)
Q Consensus 423 ~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ 502 (678)
+|+++||...++|...|-... ++++ .-+|+++|+.+ +... -.+.
T Consensus 461 AihEAMEQQtISIaKAGv~aT-------LnAR-tSIlAAANPv~----------------GhYd------------R~kt 504 (764)
T KOG0480|consen 461 AIHEAMEQQTISIAKAGVVAT-------LNAR-TSILAAANPVG----------------GHYD------------RKKT 504 (764)
T ss_pred HHHHHHHhheehheecceEEe-------ecch-hhhhhhcCCcC----------------Cccc------------cccc
Confidence 999999977777655442211 1111 22334444432 1111 1223
Q ss_pred HHhhcchhhhhhhcCCcccccccce-EEecCCcCHHHHHHHHhchHH-----------------HHHHHHHHHHhcCCce
Q 005762 503 LLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLTEPKN-----------------ALGKQYKRLFSMNNVK 564 (678)
Q Consensus 503 ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~LseeeL~~Il~~~ln-----------------~L~~q~~~~~~~~gv~ 564 (678)
+.+.+. +.+++++|||. +|.++..++..=..|..+.++ ..++.|.+.. .+++
T Consensus 505 l~eNi~--------msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yA--R~~~ 574 (764)
T KOG0480|consen 505 LRENIN--------MSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYA--RNFK 574 (764)
T ss_pred hhhhcC--------CCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHH--HhcC
Confidence 444444 88999999998 466677777544444332211 2334444432 2677
Q ss_pred eeeCHHHHHHHHHhhc-------------CCCCCHHHHHHHHHHHHHHHHhcC
Q 005762 565 LHFTEKALRVIAKKAT-------------AKNTGARGLRAILESILTEAMYEI 604 (678)
Q Consensus 565 l~~t~eal~~La~~a~-------------~~~~GAR~Lr~iIE~il~~a~~~~ 604 (678)
..++.+|-+.|.++-- ....-+|+|+++|. |.+|++.+
T Consensus 575 P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsEA~Ar~ 625 (764)
T KOG0480|consen 575 PKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIR--LSEARARV 625 (764)
T ss_pred ccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHH--HHHHHHhh
Confidence 7788888888876521 12345899999886 45555443
No 212
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=3.1e-08 Score=107.03 Aligned_cols=86 Identities=23% Similarity=0.317 Sum_probs=55.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC------------------------EEEEeccccccccccccchHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQ 381 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~------------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~ 381 (678)
..+||+||+|+|||++|+.+|+.+.+. ++.+....- ...++ -..++++...
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~~~i~---id~iR~l~~~ 97 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--DKTIK---VDQVRELVSF 97 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--CCCCC---HHHHHHHHHH
Confidence 569999999999999999999998541 122211100 00111 2344444433
Q ss_pred hchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 382 a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
....-..+..-|++|||+|++... .+|+||+.||.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE 132 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE 132 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC
Confidence 322212234569999999999987 99999999994
No 213
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.71 E-value=1.8e-07 Score=104.15 Aligned_cols=124 Identities=23% Similarity=0.285 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCC--CEEEEecc---------cccc---ccccccch-HHHHHHHHHhhchhHhhh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADAT---------TLTQ---AGYVGEDV-ESILYKLLAQAEFNVEAA 389 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~--~fv~id~s---------~l~~---sgyvG~~~-~~~l~~l~~~a~~~v~~a 389 (678)
+.+++|+||||||||++|+.+|+.+.. .+..+++. ++.. .+++|... .+.+.++...+..+ ..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~ 271 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PE 271 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc--cc
Confidence 479999999999999999999998843 22222222 2210 11223221 12333444433221 12
Q ss_pred cCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcc----eeecCCCCcccCCCCCeEEEecCcceEEecCCCc
Q 005762 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT----IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (678)
Q Consensus 390 ~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~----~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~ 465 (678)
.+.|||||||++...+ .+...|+.+||.. ...++-.- ....... ..--.|+.||+|.|..
T Consensus 272 ~~~vliIDEINRani~-------------kiFGel~~lLE~~~rg~~~~v~l~y--~e~d~e~-f~iP~Nl~IIgTMNt~ 335 (459)
T PRK11331 272 KKYVFIIDEINRANLS-------------KVFGEVMMLMEHDKRGENWSVPLTY--SENDEER-FYVPENVYIIGLMNTA 335 (459)
T ss_pred CCcEEEEehhhccCHH-------------Hhhhhhhhhccccccccccceeeec--ccccccc-ccCCCCeEEEEecCcc
Confidence 4689999999987754 2667788888821 11111000 0000011 2234788999988866
Q ss_pred C
Q 005762 466 D 466 (678)
Q Consensus 466 ~ 466 (678)
|
T Consensus 336 D 336 (459)
T PRK11331 336 D 336 (459)
T ss_pred c
Confidence 4
No 214
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.70 E-value=2.8e-08 Score=112.98 Aligned_cols=95 Identities=24% Similarity=0.400 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc-----ccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT-----TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s-----~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 399 (678)
..||||+|.||||||-|.+.+++++-.-.+ .+.. .|+ .|+-.+.. ..+++ ...+.+-.+.+||-.|||+
T Consensus 462 ~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSavGLT--ayVtrd~d--tkqlV-LesGALVLSD~GiCCIDEF 535 (804)
T KOG0478|consen 462 DINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSAVGLT--AYVTKDPD--TRQLV-LESGALVLSDNGICCIDEF 535 (804)
T ss_pred cceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccchhcce--eeEEecCc--cceee-eecCcEEEcCCceEEchhh
Confidence 479999999999999999999999844322 2211 111 12222211 11111 1223345568899999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCC
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKG 439 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g 439 (678)
|||... .++.|++.||-..++|+..|
T Consensus 536 DKM~dS--------------trSvLhEvMEQQTvSIAKAG 561 (804)
T KOG0478|consen 536 DKMSDS--------------TRSVLHEVMEQQTLSIAKAG 561 (804)
T ss_pred hhhhHH--------------HHHHHHHHHHHhhhhHhhcc
Confidence 999776 88899999997777776555
No 215
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=4.5e-07 Score=105.43 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=40.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+||++.++.|..++...... ..+...++|+||||||||++++++|+.++..++
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~--------------------------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLE--------------------------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccc--------------------------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 899999999887777422100 001234999999999999999999999876543
Q ss_pred E
Q 005762 355 I 355 (678)
Q Consensus 355 ~ 355 (678)
+
T Consensus 140 E 140 (637)
T TIGR00602 140 E 140 (637)
T ss_pred H
Confidence 3
No 216
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.63 E-value=3e-07 Score=96.02 Aligned_cols=93 Identities=28% Similarity=0.436 Sum_probs=67.5
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEecccccccc----ccccchHHHHHHHHHhhchhHhhhcCcE
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV------NVPFVIADATTLTQAG----YVGEDVESILYKLLAQAEFNVEAAQQGM 393 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l------~~~fv~id~s~l~~sg----yvG~~~~~~l~~l~~~a~~~v~~a~~gI 393 (678)
...++||.||+|.||++||+.|.+.- ..+|++++|..|...+ .+|.- .+.++..-....+.+..+.++.
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv-kgaftga~~~r~gllrsadggm 285 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV-KGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh-ccccccchhhhhhhhccCCCce
Confidence 35789999999999999999988543 5799999999876321 11211 1222222223345567788999
Q ss_pred EEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcc
Q 005762 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (678)
Q Consensus 394 LfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~ 431 (678)
||||||..+..+ -|..||+.+|.+
T Consensus 286 lfldeigelgad--------------eqamllkaieek 309 (531)
T COG4650 286 LFLDEIGELGAD--------------EQAMLLKAIEEK 309 (531)
T ss_pred EehHhhhhcCcc--------------HHHHHHHHHHhh
Confidence 999999998766 889999999943
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.58 E-value=1.9e-07 Score=84.05 Aligned_cols=76 Identities=29% Similarity=0.420 Sum_probs=52.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC---EEEEecccccccc------------ccccchHHHHHHHHHhhchhHhhhc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP---FVIADATTLTQAG------------YVGEDVESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~---fv~id~s~l~~sg------------yvG~~~~~~l~~l~~~a~~~v~~a~ 390 (678)
.+++|+||||||||++++.+|..+... ++.+++....... .........+...+..+.. ..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK----LK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh----cC
Confidence 689999999999999999999999764 8888887644211 0111113333344433332 23
Q ss_pred CcEEEEcCccchhhh
Q 005762 391 QGMVYIDEVDKITKK 405 (678)
Q Consensus 391 ~gILfIDEIDkl~~~ 405 (678)
..||||||++.+...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 589999999998775
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=5.8e-07 Score=97.66 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
+..+||+||+|+||+++|+.+|+.+.+
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 367999999999999999999999854
No 219
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.4e-06 Score=95.23 Aligned_cols=94 Identities=30% Similarity=0.428 Sum_probs=63.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc-ccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT-TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s-~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 404 (678)
..+||.||||+|||+||-.+|...+.||+.+=.. ++. |+.-..--..+.+.|..+-. ..-+||+||+|++|..
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~mi--G~sEsaKc~~i~k~F~DAYk----S~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMI--GLSESAKCAHIKKIFEDAYK----SPLSIIVVDDIERLLD 612 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHcc--CccHHHHHHHHHHHHHHhhc----CcceEEEEcchhhhhc
Confidence 6799999999999999999999999999976443 332 22111112345666666533 2557999999999865
Q ss_pred hhccccccCCCchhHHHHHHHHHHh
Q 005762 405 KAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 405 ~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
- ..+|...| .-++++|+-+|.
T Consensus 613 ~---vpIGPRfS-N~vlQaL~VllK 633 (744)
T KOG0741|consen 613 Y---VPIGPRFS-NLVLQALLVLLK 633 (744)
T ss_pred c---cccCchhh-HHHHHHHHHHhc
Confidence 3 22333322 236677777664
No 220
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.53 E-value=9.1e-07 Score=90.54 Aligned_cols=172 Identities=23% Similarity=0.384 Sum_probs=109.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---CC
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NV 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~~ 351 (678)
++|-|..|+.|.+...... .+ .+-.|+||+|.-|||||+|+|++...+ +.
T Consensus 62 l~Gvd~qk~~L~~NT~~F~-----~G----------------------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl 114 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFA-----EG----------------------LPANNVLLWGARGTGKSSLVKALLNEYADEGL 114 (287)
T ss_pred HhCchHHHHHHHHHHHHHH-----cC----------------------CcccceEEecCCCCChHHHHHHHHHHHHhcCC
Confidence 7999999998866543221 11 134899999999999999999999887 56
Q ss_pred CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcc
Q 005762 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (678)
Q Consensus 352 ~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~ 431 (678)
.+|+++-.++..- . .+-+.++..+ ..=|||+|+.- +-. +++...+|..+|||.
T Consensus 115 rLVEV~k~dl~~L-------p-~l~~~Lr~~~------~kFIlFcDDLS-Fe~------------gd~~yK~LKs~LeG~ 167 (287)
T COG2607 115 RLVEVDKEDLATL-------P-DLVELLRARP------EKFILFCDDLS-FEE------------GDDAYKALKSALEGG 167 (287)
T ss_pred eEEEEcHHHHhhH-------H-HHHHHHhcCC------ceEEEEecCCC-CCC------------CchHHHHHHHHhcCC
Confidence 7899998887631 2 2333333332 33599999864 211 223777899999975
Q ss_pred eeecCCCCcccCCCCCeEEEecCcceEEecCCCcCH-HHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchh
Q 005762 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (678)
Q Consensus 432 ~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~L-e~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~e 510 (678)
+.- .-.|++|..|+|-..| .+...++ .++. ..+.+.
T Consensus 168 ve~-----------------rP~NVl~YATSNRRHLl~e~~~dn-----~~~~---------------------~eih~~ 204 (287)
T COG2607 168 VEG-----------------RPANVLFYATSNRRHLLPEDMKDN-----EGST---------------------GEIHPS 204 (287)
T ss_pred ccc-----------------CCCeEEEEEecCCcccccHhhhhC-----CCcc---------------------cccChh
Confidence 432 2346677776664432 1111111 1111 112222
Q ss_pred hhhhhcCCcccccccceEEecCCcCHHHHHHHHhc
Q 005762 511 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 511 dLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
|.++..+ .|-.||...+.|.+.+.++..+|+..
T Consensus 205 eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~ 237 (287)
T COG2607 205 EAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVDH 237 (287)
T ss_pred HHHHHhh--chhhhcceeecccCCCHHHHHHHHHH
Confidence 2222222 35679999999999999999998874
No 221
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.4e-06 Score=94.18 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=55.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC------------------------EEEEeccccccccccccchHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQ 381 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~------------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~ 381 (678)
..+||+||.|+||+++|+.+|+.+.+. |+.+... +...++ -..++++...
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~~I~---id~iR~l~~~ 98 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DNKDIG---VDQVREINEK 98 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cCCCCC---HHHHHHHHHH
Confidence 568899999999999999999988431 1111110 001112 2334444333
Q ss_pred hchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 382 a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
....-.....-|++||++|+|+.. .+|+||+.||.
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE 133 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE 133 (325)
T ss_pred HhhccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC
Confidence 222212234469999999999987 99999999994
No 222
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.4e-06 Score=93.81 Aligned_cols=91 Identities=27% Similarity=0.352 Sum_probs=54.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCE--EEEecc-----------ccc----cccccccc-----hHHHHHHHHHhhc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF--VIADAT-----------TLT----QAGYVGED-----VESILYKLLAQAE 383 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~f--v~id~s-----------~l~----~sgyvG~~-----~~~~l~~l~~~a~ 383 (678)
..+||+||+|+||+++|..+|+.+.+.- -.-.|. |+. .....|.. .-..++++.....
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~ 106 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLA 106 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHh
Confidence 4599999999999999999998884310 000010 110 00001110 0223444443322
Q ss_pred hhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 384 FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 384 ~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
..-..+..-|++||++|+|+.. .+|+||+.||.
T Consensus 107 ~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 139 (319)
T PRK08769 107 LTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEE 139 (319)
T ss_pred hCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhC
Confidence 1111123459999999999887 99999999994
No 223
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.51 E-value=2e-06 Score=90.34 Aligned_cols=65 Identities=25% Similarity=0.428 Sum_probs=48.3
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC-
Q 005762 272 DKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN- 350 (678)
Q Consensus 272 d~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~- 350 (678)
.+-+|||-.|.++.-..+. .++ .++ +..+.+|+.|+||||||.+|-.+|+.++
T Consensus 39 s~GmVGQ~~AR~Aagvi~k----mi~-egk---------------------iaGraiLiaG~pgtGKtAiAmg~sksLG~ 92 (454)
T KOG2680|consen 39 SEGMVGQVKARKAAGVILK----MIR-EGK---------------------IAGRAILIAGQPGTGKTAIAMGMSKSLGD 92 (454)
T ss_pred cccchhhHHHHHHhHHHHH----HHH-cCc---------------------ccceEEEEecCCCCCceeeeeehhhhhCC
Confidence 4457999999987766553 111 111 1237899999999999999999999996
Q ss_pred -CCEEEEeccccc
Q 005762 351 -VPFVIADATTLT 362 (678)
Q Consensus 351 -~~fv~id~s~l~ 362 (678)
.||..+..+++.
T Consensus 93 ~tpF~~i~gSEI~ 105 (454)
T KOG2680|consen 93 DTPFTSISGSEIY 105 (454)
T ss_pred CCceeeeecceee
Confidence 488888887643
No 224
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.49 E-value=3.4e-07 Score=110.69 Aligned_cols=152 Identities=29% Similarity=0.378 Sum_probs=112.3
Q ss_pred cccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccc-cccc----cchHHH--HHHHHHhhchhHhhh-cCcE
Q 005762 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVG----EDVESI--LYKLLAQAEFNVEAA-QQGM 393 (678)
Q Consensus 322 ~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~s-gyvG----~~~~~~--l~~l~~~a~~~v~~a-~~gI 393 (678)
.....++|+.||+-+|||++...+|+..+..|++++-.+-++. .|+| .+.++. -...+ |++- .+--
T Consensus 885 s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvL------VeAlR~GyW 958 (4600)
T COG5271 885 SLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVL------VEALRRGYW 958 (4600)
T ss_pred hhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHH------HHHHhcCcE
Confidence 3456789999999999999999999999999999998765432 2333 222211 01111 1221 3348
Q ss_pred EEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHH
Q 005762 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTIS 472 (678)
Q Consensus 394 LfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~ 472 (678)
|+|||..-...+ |+.+|-++|| ++...||+.....+++..++.++|.|...+-+|.
T Consensus 959 IVLDELNLApTD--------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGR--------- 1015 (4600)
T COG5271 959 IVLDELNLAPTD--------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGR--------- 1015 (4600)
T ss_pred EEeeccccCcHH--------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccch---------
Confidence 999999965554 9999999998 8888999998888888888888888875554442
Q ss_pred hhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhc
Q 005762 473 ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 473 ~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
+++...|++||-. ++|....++|+..||..
T Consensus 1016 ------------------------------------------K~LSrAFRNRFlE-~hFddipedEle~ILh~ 1045 (4600)
T COG5271 1016 ------------------------------------------KGLSRAFRNRFLE-MHFDDIPEDELEEILHG 1045 (4600)
T ss_pred ------------------------------------------HHHHHHHHhhhHh-hhcccCcHHHHHHHHhc
Confidence 2355567788855 58999999999999874
No 225
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=1.4e-06 Score=81.15 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=53.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC--CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~--~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 403 (678)
..++|+||.|||||++++.+++.+. ..++.+++.+....... . .. +.+.+.+.. .....+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~~----~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLELI----KPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHhh----ccCCcEEEEehhhhhc
Confidence 4689999999999999999998876 77888888765421100 0 00 222222211 1155799999999874
Q ss_pred hhhccccccCCCchhHHHHHHHHHHh
Q 005762 404 KKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 404 ~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
. ....+..+.+
T Consensus 75 ~---------------~~~~lk~l~d 85 (128)
T PF13173_consen 75 D---------------WEDALKFLVD 85 (128)
T ss_pred c---------------HHHHHHHHHH
Confidence 2 5666666665
No 226
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.7e-07 Score=103.14 Aligned_cols=74 Identities=23% Similarity=0.440 Sum_probs=59.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
..+||+|+||||||++++++|++++.+++.+||.++.... ....+..+...|..+.. ..++||||-.+|-+.-+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s--~~~~etkl~~~f~~a~~----~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAES--ASHTETKLQAIFSRARR----CSPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcc--cchhHHHHHHHHHHHhh----cCceEEEEeccceeeec
Confidence 5799999999999999999999999999999999987531 22235666666766543 48899999999988743
No 227
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.42 E-value=1.2e-06 Score=81.86 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=52.3
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
.+...|+..|.+.|+||+-|++.|..+|..|+.. .. ...+-.+.|+|+||||||.+
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~---~~---------------------p~KpLVlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN---PN---------------------PRKPLVLSFHGWTGTGKNFV 69 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC---CC---------------------CCCCEEEEeecCCCCcHHHH
Confidence 4677899999999999999999999999876421 00 01235677999999999999
Q ss_pred HHHHHHHh
Q 005762 342 AKTLARHV 349 (678)
Q Consensus 342 AralA~~l 349 (678)
++.||+.+
T Consensus 70 ~~liA~~l 77 (127)
T PF06309_consen 70 SRLIAEHL 77 (127)
T ss_pred HHHHHHHH
Confidence 99999987
No 228
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1.8e-06 Score=93.68 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=54.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC--EEEEecc--------------cc---ccc---cccccchHHHHHHHHHhhc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP--FVIADAT--------------TL---TQA---GYVGEDVESILYKLLAQAE 383 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~--fv~id~s--------------~l---~~s---gyvG~~~~~~l~~l~~~a~ 383 (678)
..+||+||+|+||+++|.++|+.+.+. --...|. |+ ... ..++ -..++.+.+...
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~---idqiR~l~~~~~ 101 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG---VDAVREVTEKLY 101 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC---HHHHHHHHHHHh
Confidence 568999999999999999999988431 0000111 11 000 0112 223444433322
Q ss_pred hhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 384 FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 384 ~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
..-..+..-|++||++|+|+.. .+|+||+.||.
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 134 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEE 134 (334)
T ss_pred hccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcC
Confidence 1111234569999999999987 99999999994
No 229
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=2.7e-06 Score=91.95 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=57.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC-------------------------CEEEEeccccc-cccc--cccchHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV-------------------------PFVIADATTLT-QAGY--VGEDVESILYK 377 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~-------------------------~fv~id~s~l~-~sgy--vG~~~~~~l~~ 377 (678)
..+||+||+|+|||++|+.+|+.+.+ .|+.++...-. +.|. .... -..++.
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~-id~iR~ 100 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK-IDAVRE 100 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC-HHHHHH
Confidence 56999999999999999999998842 23333321100 0010 0001 233455
Q ss_pred HHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 378 l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
+.......-..+...|++||+++.+... .++.|++.||.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEe 139 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEE 139 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHh
Confidence 4444332222245569999999999887 99999999983
No 230
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=3.1e-06 Score=93.47 Aligned_cols=206 Identities=20% Similarity=0.298 Sum_probs=120.4
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l--- 349 (678)
..++|.+.-...+.+.+..|.- .+ ....+.+.|-||||||.+...+-..+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle------~~---------------------t~gSlYVsG~PGtgkt~~l~rvl~~~~~~ 202 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE------LN---------------------TSGSLYVSGQPGTGKTALLSRVLDSLSKS 202 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh------cc---------------------cCcceEeeCCCCcchHHHHHHHHHhhhhh
Confidence 3489999999999888876621 11 23679999999999999887555443
Q ss_pred -CC-CEEEEecccccccc-------------ccccchHHHHHHHHHhhchhHhhh-cCcEEEEcCccchhhhhccccccC
Q 005762 350 -NV-PFVIADATTLTQAG-------------YVGEDVESILYKLLAQAEFNVEAA-QQGMVYIDEVDKITKKAESLNISR 413 (678)
Q Consensus 350 -~~-~fv~id~s~l~~sg-------------yvG~~~~~~l~~l~~~a~~~v~~a-~~gILfIDEIDkl~~~~~~~~~~~ 413 (678)
.. ..+.++|+++..+. .++...+......|.. ..... ..-+|++||+|.|...
T Consensus 203 ~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr-------- 271 (529)
T KOG2227|consen 203 SKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITR-------- 271 (529)
T ss_pred cccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHH---HHhcccceEEEEechhhHHhhc--------
Confidence 22 34889999876531 1111111111111111 11111 2358999999999865
Q ss_pred CCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccC
Q 005762 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (678)
Q Consensus 414 d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~ 493 (678)
-+..|+.++| +| ...++.+++|.-+|.-||.+
T Consensus 272 ------~~~vLy~lFe-----wp-------------~lp~sr~iLiGiANslDlTd------------------------ 303 (529)
T KOG2227|consen 272 ------SQTVLYTLFE-----WP-------------KLPNSRIILIGIANSLDLTD------------------------ 303 (529)
T ss_pred ------ccceeeeehh-----cc-------------cCCcceeeeeeehhhhhHHH------------------------
Confidence 3445666665 00 11223333333333333221
Q ss_pred CCchHhHHHHHhhcchhhhhhhcCCcccccc---cceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGR---FPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 494 ~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R---~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
. |.|-|-.| -+.++.|.||+.+++++|++..+. . -....|-+.
T Consensus 304 --------R--------------~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~-----------~-~~t~~~~~~ 349 (529)
T KOG2227|consen 304 --------R--------------FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS-----------E-ESTSIFLNA 349 (529)
T ss_pred --------H--------------HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh-----------c-ccccccchH
Confidence 1 22222222 234789999999999999985211 1 223345568
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
|++.+|++.....+..|.+-.++.+.+.
T Consensus 350 Aie~~ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 350 AIELCARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 9999999976666667776666665543
No 231
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.41 E-value=2.9e-06 Score=93.71 Aligned_cols=71 Identities=15% Similarity=0.308 Sum_probs=54.6
Q ss_pred CCcccccccce--EEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005762 517 LIPEFVGRFPI--LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (678)
Q Consensus 517 ~~Pefl~R~~~--iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE 594 (678)
+.|.|.+||.- ++.+.+++.+.+..||... . ....+.++++++.+|++.. ..+.|.|..+++
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk-----------a--~~~~~~i~~ev~~~la~~~---~~nvReLegaL~ 288 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKK-----------A--EDRGIEIPDEVLEFLAKRL---DRNVRELEGALN 288 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH-----------H--HhcCCCCCHHHHHHHHHHh---hccHHHHHHHHH
Confidence 44556666654 7999999999999998841 1 2345669999999999984 567899999999
Q ss_pred HHHHHHHhc
Q 005762 595 SILTEAMYE 603 (678)
Q Consensus 595 ~il~~a~~~ 603 (678)
++...+.+.
T Consensus 289 ~l~~~a~~~ 297 (408)
T COG0593 289 RLDAFALFT 297 (408)
T ss_pred HHHHHHHhc
Confidence 888777654
No 232
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.40 E-value=8.5e-07 Score=93.91 Aligned_cols=86 Identities=29% Similarity=0.383 Sum_probs=57.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCE------EEEeccccccccccccchHHHHHHHHHhhch-hHh--hhcCcEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF------VIADATTLTQAGYVGEDVESILYKLLAQAEF-NVE--AAQQGMVYI 396 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~f------v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~-~v~--~a~~gILfI 396 (678)
.|+||+||||||||+...+.|+.+..+. ..+++++ -.|-++...-...|..+.. .+- .+....|+|
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd-----~rgid~vr~qi~~fast~~~~~fst~~~fKlvIL 137 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD-----DRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVIL 137 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC-----ccCCcchHHHHHHHHhhccceeccccCceeEEEe
Confidence 4999999999999999999999986541 1233332 2344433333344433321 111 124569999
Q ss_pred cCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 397 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 397 DEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
||+|.++.+ +|++|.+.+|.
T Consensus 138 DEADaMT~~--------------AQnALRRviek 157 (360)
T KOG0990|consen 138 DEADAMTRD--------------AQNALRRVIEK 157 (360)
T ss_pred cchhHhhHH--------------HHHHHHHHHHH
Confidence 999999887 99999998874
No 233
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=5.2e-06 Score=89.50 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=54.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC-----------------------CEEEEeccccccccccccchHHHHHHHHHhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV-----------------------PFVIADATTLTQAGYVGEDVESILYKLLAQA 382 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~-----------------------~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a 382 (678)
..+||+||.|+||+++|+.+|+.+.+ .|+.+.... ....++ ...++.+....
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~~I~---vdqiR~l~~~~ 100 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EGKSIT---VEQIRQCNRLA 100 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CCCcCC---HHHHHHHHHHH
Confidence 56999999999999999999998833 122221110 000111 12344433322
Q ss_pred chhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 383 ~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
......+..-|++||++|++... .+|+||+.||.
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 134 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE 134 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC
Confidence 21112234469999999999887 99999999994
No 234
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.35 E-value=3.2e-06 Score=84.39 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=27.1
Q ss_pred CcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 005762 518 IPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (678)
Q Consensus 518 ~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a 579 (678)
..++.+|+.. +.+.+|+.++..+++... +... .++.++++.++.+....
T Consensus 176 ~~~~~~~~~~-~~l~~l~~~e~~~~~~~~-----------~~~~-~~~~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 176 KSPLFGRFSH-IELKPLSKEEAREFLKEL-----------FKEL-IKLPFSDEDIEEIYSLT 224 (234)
T ss_dssp TSTTTT---E-EEE----HHHHHHHHHHH-----------HHCC-------HHHHHHHHHHH
T ss_pred cCccccccce-EEEeeCCHHHHHHHHHHH-----------HHHh-hcccCCHHHHHHHHHHh
Confidence 4568899988 899999999999988752 2122 33346899999888874
No 235
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.34 E-value=1.1e-05 Score=83.41 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=50.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
..-.+.||+|||||++++.+|+.++.+++..+|++-.+ ...+.+++.-.-. .++.+.+||++++..+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~~~-----~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGLAQ-----SGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHHHH-----HT-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHHhh-----cCchhhhhhhhhhhHH
Confidence 45689999999999999999999999999999998653 3445555543321 3579999999999876
No 236
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.33 E-value=4.9e-06 Score=86.73 Aligned_cols=163 Identities=23% Similarity=0.387 Sum_probs=100.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-C--CCEEEEecc---------------------ccccccccccchHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-N--VPFVIADAT---------------------TLTQAGYVGEDVESILYKLLAQ 381 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-~--~~fv~id~s---------------------~l~~sgyvG~~~~~~l~~l~~~ 381 (678)
.|++++||+|+||-|.+.++-+.+ | ++=..++.. +++.+. .|....-.+.+++.+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-aG~~DRvViQellKe 113 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-AGNYDRVVIQELLKE 113 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-cCcccHHHHHHHHHH
Confidence 699999999999999999988877 2 111111111 111111 233334445555543
Q ss_pred hch--hHhh---hcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcc
Q 005762 382 AEF--NVEA---AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDI 456 (678)
Q Consensus 382 a~~--~v~~---a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNi 456 (678)
... .++. ..-.+|+|.|+|+|+.+ +|.+|.+-||.. ..|+
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkY---------------------s~~~ 158 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKY---------------------SSNC 158 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHH---------------------hcCc
Confidence 211 1111 12349999999999987 999999999931 1233
Q ss_pred eEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCH
Q 005762 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE 536 (678)
Q Consensus 457 lfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Lse 536 (678)
-+|+..|... .+++++.+|. ..|..+.+++
T Consensus 159 RlIl~cns~S-------------------------------------------------riIepIrSRC-l~iRvpaps~ 188 (351)
T KOG2035|consen 159 RLILVCNSTS-------------------------------------------------RIIEPIRSRC-LFIRVPAPSD 188 (351)
T ss_pred eEEEEecCcc-------------------------------------------------cchhHHhhhe-eEEeCCCCCH
Confidence 3333332110 1445555555 3578999999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005762 537 DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (678)
Q Consensus 537 eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iI 593 (678)
+|+..++... +. ...+.+.++.+..|++.+ .|.||+.+
T Consensus 189 eeI~~vl~~v-----------~~--kE~l~lp~~~l~rIa~kS------~~nLRrAl 226 (351)
T KOG2035|consen 189 EEITSVLSKV-----------LK--KEGLQLPKELLKRIAEKS------NRNLRRAL 226 (351)
T ss_pred HHHHHHHHHH-----------HH--HhcccCcHHHHHHHHHHh------cccHHHHH
Confidence 9999988742 22 233457799999999986 25676655
No 237
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.32 E-value=2e-06 Score=104.31 Aligned_cols=155 Identities=23% Similarity=0.302 Sum_probs=102.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccc-cccccchHHH--HHHHHHhhchhHhhhcCcEEEEcCccch
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDVESI--LYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~s-gyvG~~~~~~--l~~l~~~a~~~v~~a~~gILfIDEIDkl 402 (678)
.++||.|.||+|||+|..++|+..|..+++++.++-++- ..+|.+.... -.-.+..++..-....++-|+|||+.-.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 679999999999999999999999999999999853321 1233221100 0012223333223346789999999965
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCC
Q 005762 403 TKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (678)
Q Consensus 403 ~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ig 481 (678)
+.. |+.-|-..|| .....||+-...+..+..+.++++.|..---+|
T Consensus 1624 SQS--------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggG------------------- 1670 (4600)
T COG5271 1624 SQS--------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGG------------------- 1670 (4600)
T ss_pred HHH--------------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCC-------------------
Confidence 544 8888888888 555566666555544444455544444111000
Q ss_pred cCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhch
Q 005762 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (678)
Q Consensus 482 F~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ 546 (678)
.+|+...|++||.+ |.+..|+.+|+..|+...
T Consensus 1671 --------------------------------RKgLPkSF~nRFsv-V~~d~lt~dDi~~Ia~~~ 1702 (4600)
T COG5271 1671 --------------------------------RKGLPKSFLNRFSV-VKMDGLTTDDITHIANKM 1702 (4600)
T ss_pred --------------------------------cccCCHHHhhhhhe-EEecccccchHHHHHHhh
Confidence 24577789999976 578999999999998743
No 238
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.22 E-value=1.2e-05 Score=92.38 Aligned_cols=183 Identities=21% Similarity=0.309 Sum_probs=116.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh----------CCCEEEEeccccccc---------cccccchHH-----HHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLTQA---------GYVGEDVES-----ILYKLLAQ 381 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l----------~~~fv~id~s~l~~s---------gyvG~~~~~-----~l~~l~~~ 381 (678)
+-+.+.|-||||||.++..+-+.| ...|+++|+..|... .+.|+.... .+..-|.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~- 501 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT- 501 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc-
Confidence 468999999999999998888766 358899999887743 122222111 1111111
Q ss_pred hchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEec
Q 005762 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICG 461 (678)
Q Consensus 382 a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~t 461 (678)
..-.....+||+|||.|.|... -|..|..+++= |. ...+.+++|+-
T Consensus 502 --~~k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fdW-----pt-------------~~~sKLvvi~I 547 (767)
T KOG1514|consen 502 --VPKPKRSTTVVLIDELDILVTR--------------SQDVLYNIFDW-----PT-------------LKNSKLVVIAI 547 (767)
T ss_pred --cCCCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhcC-----Cc-------------CCCCceEEEEe
Confidence 0001235679999999999876 57777777761 10 12234466666
Q ss_pred CCCcCH-HHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCHHHH
Q 005762 462 GAFVDL-EKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQL 539 (678)
Q Consensus 462 Gaf~~L-e~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~LseeeL 539 (678)
+|+-+| ++++. +-.-+|+.. -+.|.|++.++|
T Consensus 548 aNTmdlPEr~l~----------------------------------------------nrvsSRlg~tRi~F~pYth~qL 581 (767)
T KOG1514|consen 548 ANTMDLPERLLM----------------------------------------------NRVSSRLGLTRICFQPYTHEQL 581 (767)
T ss_pred cccccCHHHHhc----------------------------------------------cchhhhccceeeecCCCCHHHH
Confidence 666554 22221 122234443 479999999999
Q ss_pred HHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhc
Q 005762 540 VKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 540 ~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
.+|+..-+. +. -.|..+|++.++++-..-.+.||....++.++..-+-.+
T Consensus 582 q~Ii~~RL~-------------~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~ 631 (767)
T KOG1514|consen 582 QEIISARLK-------------GL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEER 631 (767)
T ss_pred HHHHHHhhc-------------ch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhh
Confidence 999874211 22 347889999999986666677888777777766555443
No 239
>PRK12377 putative replication protein; Provisional
Probab=98.21 E-value=3.4e-06 Score=87.89 Aligned_cols=85 Identities=16% Similarity=0.321 Sum_probs=54.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc---cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s---gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 399 (678)
.+++|+||||||||.||.+|++.+ +..++.++..++... .|.... ...+.+... ....+|+|||+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~~l------~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQEL------CKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccc---hHHHHHHHh------cCCCEEEEcCC
Confidence 689999999999999999999988 456777777665531 010000 011111111 23469999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHhcc
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~ 431 (678)
...... +..+..|.++++.+
T Consensus 173 g~~~~s------------~~~~~~l~~ii~~R 192 (248)
T PRK12377 173 GIQRET------------KNEQVVLNQIIDRR 192 (248)
T ss_pred CCCCCC------------HHHHHHHHHHHHHH
Confidence 654221 12678899999853
No 240
>PRK08116 hypothetical protein; Validated
Probab=98.20 E-value=6.3e-06 Score=86.80 Aligned_cols=86 Identities=19% Similarity=0.385 Sum_probs=53.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc---cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s---gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 399 (678)
.+++|+|++|||||.||.+|++.+ +.+++.++..++... .|.... ......++... ....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~l------~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRSL------VNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHHh------cCCCEEEEecc
Confidence 469999999999999999999987 678888887765421 011100 00011111111 12359999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
...... +-.+..|+.+++.
T Consensus 188 g~e~~t------------~~~~~~l~~iin~ 206 (268)
T PRK08116 188 GAERDT------------EWAREKVYNIIDS 206 (268)
T ss_pred cCCCCC------------HHHHHHHHHHHHH
Confidence 642111 1267788888884
No 241
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.19 E-value=6.8e-05 Score=79.83 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=63.9
Q ss_pred HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHH
Q 005762 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 267 l~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA 346 (678)
|.....++-||...|++.|...-. - +..+.. ....++||+|+++.|||++++.+.
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~-L---l~~P~~---------------------~Rmp~lLivG~snnGKT~Ii~rF~ 82 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEE-L---LEYPKR---------------------HRMPNLLIVGDSNNGKTMIIERFR 82 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHH-H---HhCCcc---------------------cCCCceEEecCCCCcHHHHHHHHH
Confidence 444445667999999987755432 0 111111 123689999999999999999999
Q ss_pred HHh---------CCCEEEEeccccccc----------cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhh
Q 005762 347 RHV---------NVPFVIADATTLTQA----------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (678)
Q Consensus 347 ~~l---------~~~fv~id~s~l~~s----------gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 404 (678)
+.. ..|++.+.+..--.. =++-......+.++.......+....--+|+|||+|.+..
T Consensus 83 ~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 83 RLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred HHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 765 237777776421100 0000000111112222222223334556999999999765
No 242
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.17 E-value=1.4e-05 Score=91.30 Aligned_cols=60 Identities=27% Similarity=0.368 Sum_probs=46.1
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-CCC
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV-NVP 352 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l-~~~ 352 (678)
.++|++++|+.|...+..+..++. ..+..++|.||||+|||+||+.||+.+ ..|
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~-------------------------~~~~IL~LvGPpG~GKSsLa~~la~~le~~~ 131 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLE-------------------------EKKQILYLLGPVGGGKSSLAERLKSLMERVP 131 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcC-------------------------CCCceEEEecCCCCCchHHHHHHHHHHHhCc
Confidence 379999999999888864433321 123679999999999999999999988 346
Q ss_pred EEEEec
Q 005762 353 FVIADA 358 (678)
Q Consensus 353 fv~id~ 358 (678)
++.+..
T Consensus 132 ~Y~~kg 137 (644)
T PRK15455 132 IYVLKA 137 (644)
T ss_pred ceeecC
Confidence 666654
No 243
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.14 E-value=2.6e-06 Score=96.27 Aligned_cols=136 Identities=18% Similarity=0.295 Sum_probs=78.8
Q ss_pred HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHH
Q 005762 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 267 l~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA 346 (678)
|...+-..|.|.+.+|++|.-++.. +.++-.+ .+.-..-..|+||+|.|||||+-..|.++
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfG--------Gv~kn~~-----------~khkvRGDinvLL~GDPGTaKSQFLKY~e 503 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFG--------GVPKNPG-----------GKHKVRGDINVLLLGDPGTAKSQFLKYAE 503 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhc--------CCccCCC-----------CCceeccceeEEEecCCCccHHHHHHHHH
Confidence 4444555689999999999888851 1111111 00111235799999999999999999999
Q ss_pred HHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHH
Q 005762 347 RHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (678)
Q Consensus 347 ~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~ 426 (678)
+....-++..--.. +..|...+-...-+.+...-..+.+..+.+||-+|||+||+... -...+-+
T Consensus 504 K~s~RAV~tTGqGA-SavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndq--------------DRtSIHE 568 (854)
T KOG0477|consen 504 KTSPRAVFTTGQGA-SAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQ--------------DRTSIHE 568 (854)
T ss_pred hcCcceeEeccCCc-cccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhccc--------------ccchHHH
Confidence 98876555432211 11111111100001111111123345578899999999999765 2234677
Q ss_pred HHhcceeecC
Q 005762 427 MLEGTIVNVP 436 (678)
Q Consensus 427 ~LEg~~v~v~ 436 (678)
+||-..++|.
T Consensus 569 AMEQQSISIS 578 (854)
T KOG0477|consen 569 AMEQQSISIS 578 (854)
T ss_pred HHHhcchhhh
Confidence 7875555543
No 244
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.13 E-value=7.4e-06 Score=75.29 Aligned_cols=87 Identities=26% Similarity=0.437 Sum_probs=51.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh--------CCCEEEEeccccccc-----------ccc--c-cchHHHHHHHHHhh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV--------NVPFVIADATTLTQA-----------GYV--G-EDVESILYKLLAQA 382 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l--------~~~fv~id~s~l~~s-----------gyv--G-~~~~~~l~~l~~~a 382 (678)
...++++||+|+|||++++.+++.+ ..+++.+++...... +.. . .+ ...+.+.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQT-SDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS--HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCC-HHHHHHHHHHH
Confidence 3689999999999999999999887 677788887643310 100 0 11 11111222111
Q ss_pred chhHhhhcCcEEEEcCccch-hhhhccccccCCCchhHHHHHHHHHHh
Q 005762 383 EFNVEAAQQGMVYIDEVDKI-TKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 383 ~~~v~~a~~gILfIDEIDkl-~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
+......+|+|||+|.+ ... ..+.|..+++
T Consensus 83 ---l~~~~~~~lviDe~~~l~~~~--------------~l~~l~~l~~ 113 (131)
T PF13401_consen 83 ---LDRRRVVLLVIDEADHLFSDE--------------FLEFLRSLLN 113 (131)
T ss_dssp ---HHHCTEEEEEEETTHHHHTHH--------------HHHHHHHHTC
T ss_pred ---HHhcCCeEEEEeChHhcCCHH--------------HHHHHHHHHh
Confidence 12222259999999998 332 7788877765
No 245
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.12 E-value=5.3e-06 Score=71.46 Aligned_cols=68 Identities=24% Similarity=0.376 Sum_probs=56.5
Q ss_pred cCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005762 534 LTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 605 (678)
Q Consensus 534 LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p 605 (678)
|+++++.+|+...++.+.+++ ...++++.|+++++++|++.++...+|||.|+++|++.+.+.+++..
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l----~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~i 68 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERL----KEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAI 68 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHH----HHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH----HHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678999999998655555444 44799999999999999999999999999999999999999988754
No 246
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.10 E-value=1.1e-05 Score=85.10 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC-CCE--EEEeccccccccccccchHHHHHHHHHhhc----hhH---hhhcCcEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN-VPF--VIADATTLTQAGYVGEDVESILYKLLAQAE----FNV---EAAQQGMV 394 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~-~~f--v~id~s~l~~sgyvG~~~~~~l~~l~~~a~----~~v---~~a~~gIL 394 (678)
..++||+||+|||||.+++.+-+.+. ..+ ..++++..+. ...+.+.++... +.+ ...+..|+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 47899999999999999987665553 332 3455544331 223333322211 100 11345699
Q ss_pred EEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCC
Q 005762 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (678)
Q Consensus 395 fIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf 464 (678)
|||+++.-.++.- ..+...+.|.++|| |...+- + +.-.....++.||++.+.
T Consensus 105 fiDDlN~p~~d~y--------gtq~~iElLRQ~i~~~g~yd~---------~-~~~~~~i~~i~~vaa~~p 157 (272)
T PF12775_consen 105 FIDDLNMPQPDKY--------GTQPPIELLRQLIDYGGFYDR---------K-KLEWKSIEDIQFVAAMNP 157 (272)
T ss_dssp EEETTT-S---TT--------S--HHHHHHHHHHHCSEEECT---------T-TTEEEEECSEEEEEEESS
T ss_pred EecccCCCCCCCC--------CCcCHHHHHHHHHHhcCcccC---------C-CcEEEEEeeeEEEEecCC
Confidence 9999996554421 11236678888888 444421 1 122456677888887654
No 247
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.07 E-value=1.2e-06 Score=97.00 Aligned_cols=138 Identities=22% Similarity=0.334 Sum_probs=78.3
Q ss_pred HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccc-ccCCcEEEEcCCCcHHHHHHHHH
Q 005762 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVE-LEKSNVLLMGPTGSGKTLLAKTL 345 (678)
Q Consensus 267 l~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~-~~~~~iLL~GPpGtGKT~LAral 345 (678)
|.+.+...|+|.+.+|+++.=.|.- +.++. +. +.+. .-.-||||.|.|||.|+-|.+.+
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLFg--------GsrK~---------Lp---Dg~~lRGDINVLLLGDPgtAKSQlLKFv 384 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLFG--------GSRKR---------LP---DGVTLRGDINVLLLGDPGTAKSQLLKFV 384 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhhc--------Ccccc---------CC---CcceeccceeEEEecCCchhHHHHHHHH
Confidence 3444555689999999998766641 11110 00 0111 12479999999999999999988
Q ss_pred HHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHH
Q 005762 346 ARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (678)
Q Consensus 346 A~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL 425 (678)
-+..-.-++ .+...-..+|+...-...-....|-...+....+.+||+.|||+||+-.+ -.-++-
T Consensus 385 EkvsPIaVY-TSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~--------------DRVAIH 449 (729)
T KOG0481|consen 385 EKVSPIAVY-TSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED--------------DRVAIH 449 (729)
T ss_pred HhcCceEEE-ecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCch--------------hhhHHH
Confidence 876633222 22211111111111001111112222233445678999999999999765 344678
Q ss_pred HHHhcceeecCCCC
Q 005762 426 KMLEGTIVNVPEKG 439 (678)
Q Consensus 426 ~~LEg~~v~v~~~g 439 (678)
++||-..+++...|
T Consensus 450 EAMEQQTISIAKAG 463 (729)
T KOG0481|consen 450 EAMEQQTISIAKAG 463 (729)
T ss_pred HHHHhhhHHHhhhc
Confidence 88886666654444
No 248
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.05 E-value=4e-05 Score=87.71 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=27.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
..+||+||||||||+++++||++++..+.+.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 4689999999999999999999998877654
No 249
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.00 E-value=7.5e-05 Score=84.35 Aligned_cols=149 Identities=19% Similarity=0.268 Sum_probs=82.9
Q ss_pred HhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 269 ~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
+.|...|.|.+.+|++|.-.+.-. +++.+.+...+ .-.-||||+|.|-|-|+-|.|.+-+.
T Consensus 297 ~SLAPSI~GH~~vKkAillLLlGG------------------vEk~L~NGshl-RGDINiLlvGDPSvAKSQLLRyVLnt 357 (818)
T KOG0479|consen 297 RSLAPSIYGHDYVKKAILLLLLGG------------------VEKNLENGSHL-RGDINILLVGDPSVAKSQLLRYVLNT 357 (818)
T ss_pred hccCcccccHHHHHHHHHHHHhcc------------------ceeccCCCcee-ccceeEEEecCchHHHHHHHHHHHhc
Confidence 345566999999999886665311 11111111111 12479999999999999999998876
Q ss_pred hCCCEEEEecc----ccccccccc-cchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHH
Q 005762 349 VNVPFVIADAT----TLTQAGYVG-EDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (678)
Q Consensus 349 l~~~fv~id~s----~l~~sgyvG-~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~ 423 (678)
.-.-+...-.. .|+.+--.. +.-+..+ + -+....+..|||.|||+||++.- -.-+
T Consensus 358 AplAI~TTGRGSSGVGLTAAVTtD~eTGERRL----E--AGAMVLADRGVVCIDEFDKMsDi--------------DRvA 417 (818)
T KOG0479|consen 358 APLAIATTGRGSSGVGLTAAVTTDQETGERRL----E--AGAMVLADRGVVCIDEFDKMSDI--------------DRVA 417 (818)
T ss_pred ccccccccCCCCCCccceeEEeeccccchhhh----h--cCceEEccCceEEehhcccccch--------------hHHH
Confidence 52211111000 111100000 0001111 1 12233468899999999998754 3457
Q ss_pred HHHHHhcceeecCCCCcccCCCCCeEEEecCcc
Q 005762 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDI 456 (678)
Q Consensus 424 LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNi 456 (678)
+-+.||-..|+|...|-......+.-++...|.
T Consensus 418 IHEVMEQqtVTIaKAGIHasLNARCSVlAAANP 450 (818)
T KOG0479|consen 418 IHEVMEQQTVTIAKAGIHASLNARCSVLAAANP 450 (818)
T ss_pred HHHHHhcceEEeEeccchhhhccceeeeeecCc
Confidence 899999666666555544333334444444444
No 250
>PRK08181 transposase; Validated
Probab=97.97 E-value=8.7e-06 Score=85.86 Aligned_cols=87 Identities=23% Similarity=0.379 Sum_probs=55.0
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
...+++|+||||||||.||.+|++.+ +..++.+++.++... +........+.+.+... ...-+|+|||++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~-l~~a~~~~~~~~~l~~l------~~~dLLIIDDlg 177 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-LQVARRELQLESAIAKL------DKFDLLILDDLA 177 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH-HHHHHhCCcHHHHHHHH------hcCCEEEEeccc
Confidence 45789999999999999999999766 556777777665531 00000000111111111 234699999999
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.+... +..++.|+++++
T Consensus 178 ~~~~~------------~~~~~~Lf~lin 194 (269)
T PRK08181 178 YVTKD------------QAETSVLFELIS 194 (269)
T ss_pred cccCC------------HHHHHHHHHHHH
Confidence 76543 125677888887
No 251
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00011 Score=78.22 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=52.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEE-----E---Eecccccc---cc--cc---ccc-hHHHHHHHHHhhchhHhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV-----I---ADATTLTQ---AG--YV---GED-VESILYKLLAQAEFNVEA 388 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv-----~---id~s~l~~---sg--yv---G~~-~~~~l~~l~~~a~~~v~~ 388 (678)
..+||+|| +||+++|+.+|+.+.+.-. . -+|..+.. .+ ++ |.. .-..++++.......-..
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~ 102 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYE 102 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCccc
Confidence 56899996 6899999999988843110 0 01111100 00 11 111 023344444333221122
Q ss_pred hcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 389 a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
+..-|++||++|+++.. ..|+||+.||.
T Consensus 103 ~~~kV~II~~ad~m~~~--------------AaNaLLKtLEE 130 (290)
T PRK07276 103 GKQQVFIIKDADKMHVN--------------AANSLLKVIEE 130 (290)
T ss_pred CCcEEEEeehhhhcCHH--------------HHHHHHHHhcC
Confidence 34569999999999887 99999999994
No 252
>PRK06526 transposase; Provisional
Probab=97.91 E-value=7.7e-06 Score=85.53 Aligned_cols=87 Identities=23% Similarity=0.314 Sum_probs=52.3
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
...+++|+||||||||+||.+|+..+ +..++.+++.++...-..... .+.+...+.. .....+|+|||++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~-~~~~~~~l~~------l~~~dlLIIDD~g 169 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH-AGRLQAELVK------LGRYPLLIVDEVG 169 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh-cCcHHHHHHH------hccCCEEEEcccc
Confidence 45799999999999999999999876 445555555544321000000 0011111111 1234699999999
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.+... ...++.|+++++
T Consensus 170 ~~~~~------------~~~~~~L~~li~ 186 (254)
T PRK06526 170 YIPFE------------PEAANLFFQLVS 186 (254)
T ss_pred cCCCC------------HHHHHHHHHHHH
Confidence 76532 125677888886
No 253
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=4.5e-05 Score=81.12 Aligned_cols=114 Identities=22% Similarity=0.177 Sum_probs=69.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc--------cc---cccc---ccccchHHHHHHHHHhhchhHhhhcC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT--------TL---TQAG---YVGEDVESILYKLLAQAEFNVEAAQQ 391 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s--------~l---~~sg---yvG~~~~~~l~~l~~~a~~~v~~a~~ 391 (678)
..+||+||.|+||+++|..+|+.+.+.-..-+|. |+ ...+ .++ -..++.+.......-..+..
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~---idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHS---IETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCc---HHHHHHHHHHHhhCccCCCc
Confidence 5689999999999999999999884421001111 11 1011 011 22334433332211112344
Q ss_pred cEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEe-cCCCcCHHHH
Q 005762 392 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GGAFVDLEKT 470 (678)
Q Consensus 392 gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~-tGaf~~Le~~ 470 (678)
-|++||++|+++.. .+|+||+.||. | ..+++||+ |.+...|-.+
T Consensus 97 kv~ii~~ad~mt~~--------------AaNaLLK~LEE-----P----------------p~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 97 KIYIIHEADRMTLD--------------AISAFLKVLED-----P----------------PQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHhhc-----C----------------CCCeEEEEEeCChhhCcHH
Confidence 69999999999987 99999999994 1 12334444 4444556677
Q ss_pred HHhhccc
Q 005762 471 ISERRQD 477 (678)
Q Consensus 471 i~~r~~~ 477 (678)
|..|++.
T Consensus 142 I~SRcq~ 148 (290)
T PRK05917 142 IRSRSLS 148 (290)
T ss_pred HHhcceE
Confidence 7777765
No 254
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.87 E-value=1.9e-05 Score=87.87 Aligned_cols=136 Identities=21% Similarity=0.295 Sum_probs=81.2
Q ss_pred HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHH
Q 005762 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 267 l~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA 346 (678)
|.+.+...|.|.+.+|+.|.-.|.-. ..+..+ ..|+ ..-.-||+|.|.||+-|+-|.+.|.
T Consensus 336 La~SiAPEIyGheDVKKaLLLlLVGg------vd~~~~----dGMK---------IRGdINicLmGDPGVAKSQLLkyi~ 396 (721)
T KOG0482|consen 336 LAASIAPEIYGHEDVKKALLLLLVGG------VDKSPG----DGMK---------IRGDINICLMGDPGVAKSQLLKYIS 396 (721)
T ss_pred HHHhhchhhccchHHHHHHHHHhhCC------CCCCCC----CCce---------eecceeEEecCCCchhHHHHHHHHH
Confidence 44555666999999999997766410 000000 0111 0124699999999999999999999
Q ss_pred HHhCCCEEEEeccccccccccccc---hHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHH
Q 005762 347 RHVNVPFVIADATTLTQAGYVGED---VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (678)
Q Consensus 347 ~~l~~~fv~id~s~l~~sgyvG~~---~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~ 423 (678)
+..-.-.+..--.+ +| ||-. ...-++..+.-..+.+..+.+||-.|||+||+... -..+
T Consensus 397 rlapRgvYTTGrGS---SG-VGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--------------DRtA 458 (721)
T KOG0482|consen 397 RLAPRGVYTTGRGS---SG-VGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--------------DRTA 458 (721)
T ss_pred hcCcccceecCCCC---Cc-cccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------hhHH
Confidence 98855444322221 11 1111 00001111111233455678899999999999876 4567
Q ss_pred HHHHHhcceeecCCCC
Q 005762 424 LLKMLEGTIVNVPEKG 439 (678)
Q Consensus 424 LL~~LEg~~v~v~~~g 439 (678)
+-+.||-..++|...|
T Consensus 459 IHEVMEQQTISIaKAG 474 (721)
T KOG0482|consen 459 IHEVMEQQTISIAKAG 474 (721)
T ss_pred HHHHHHhhhhhhhhhc
Confidence 8899996666664443
No 255
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0002 Score=76.80 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=55.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC-----------C--EEEEeccccccccccccch-HHHHHHHHHhhchhH-hhhc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV-----------P--FVIADATTLTQAGYVGEDV-ESILYKLLAQAEFNV-EAAQ 390 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~-----------~--fv~id~s~l~~sgyvG~~~-~~~l~~l~~~a~~~v-~~a~ 390 (678)
..+||+|+.|+||+++|+.+++.+.+ | ++.++.. |... -..++.+.......- ....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~--------g~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF--------DKDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC--------CCcCCHHHHHHHHHHhccCCcccCC
Confidence 45789999999999999999998722 1 2222210 1110 234445544433221 1235
Q ss_pred CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 391 ~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
.-|++||++|++... .+++||+.||.
T Consensus 91 ~KvvII~~~e~m~~~--------------a~NaLLK~LEE 116 (299)
T PRK07132 91 KKILIIKNIEKTSNS--------------LLNALLKTIEE 116 (299)
T ss_pred ceEEEEecccccCHH--------------HHHHHHHHhhC
Confidence 679999999999876 89999999994
No 256
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.81 E-value=8e-05 Score=67.46 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=46.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCC--------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVP--------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~--------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 399 (678)
|.|+||||+|||++|+.|++.+... ++.....+-.=.||. .+.++++||+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~----------------------~q~vvi~DD~ 58 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ----------------------GQPVVIIDDF 58 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC----------------------CCcEEEEeec
Confidence 5799999999999999999877422 222111111001111 3469999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHhcceeec
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNV 435 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v 435 (678)
....... .......|+++++...+.+
T Consensus 59 ~~~~~~~----------~~~~~~~l~~l~s~~~~~~ 84 (107)
T PF00910_consen 59 GQDNDGY----------NYSDESELIRLISSNPFQP 84 (107)
T ss_pred Ccccccc----------chHHHHHHHHHHhcCCccc
Confidence 9765420 1125677888888544433
No 257
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.80 E-value=0.00011 Score=76.46 Aligned_cols=86 Identities=17% Similarity=0.299 Sum_probs=53.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccccccccc--chHHHHHHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~--~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
.+++|+|+||||||+|+.+||+.+ +..++.++..++... +... ........++... ...-+|+|||++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~-l~~~~~~~~~~~~~~l~~l------~~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA-MKDTFSNSETSEEQLLNDL------SNVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH-HHHHHhhccccHHHHHHHh------ccCCEEEEeCCC
Confidence 589999999999999999999988 567778887776521 0000 0000011122111 133599999998
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
..... +-....|.++++.
T Consensus 173 ~~~~s------------~~~~~~l~~Ii~~ 190 (244)
T PRK07952 173 VQTES------------RYEKVIINQIVDR 190 (244)
T ss_pred CCCCC------------HHHHHHHHHHHHH
Confidence 75422 1244567778874
No 258
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.78 E-value=5.2e-05 Score=79.36 Aligned_cols=73 Identities=23% Similarity=0.404 Sum_probs=48.6
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc---cccccchHHHHHHHHHhhchhHhhhcCcEEEEc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYID 397 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s---gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfID 397 (678)
...+++|+||||||||.||-+|++.+ +..++.+...++... .+-....+..+...+. .--+|+||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~---------~~dlLIiD 174 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK---------KVDLLIID 174 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh---------cCCEEEEe
Confidence 46799999999999999999999888 567777888776531 1100011222222221 22599999
Q ss_pred Cccchhhh
Q 005762 398 EVDKITKK 405 (678)
Q Consensus 398 EIDkl~~~ 405 (678)
|+-.....
T Consensus 175 DlG~~~~~ 182 (254)
T COG1484 175 DIGYEPFS 182 (254)
T ss_pred cccCccCC
Confidence 99975543
No 259
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.77 E-value=3.3e-05 Score=76.56 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=51.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc---cccccchHHHHHHHHHhhchhHhhhcCcEEEEcC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s---gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 398 (678)
..+++|+||||||||.||.++++.+ +.+...++..+|... .+........+..+ ...-+|+|||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l----------~~~dlLilDD 116 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL----------KRVDLLILDD 116 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH----------HTSSCEEEET
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc----------ccccEecccc
Confidence 4789999999999999999999877 667777888766531 11111111212111 1235999999
Q ss_pred ccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 399 VDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 399 IDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
+...... +...+.|+++|+.
T Consensus 117 lG~~~~~------------~~~~~~l~~ii~~ 136 (178)
T PF01695_consen 117 LGYEPLS------------EWEAELLFEIIDE 136 (178)
T ss_dssp CTSS---------------HHHHHCTHHHHHH
T ss_pred cceeeec------------ccccccchhhhhH
Confidence 9754322 2256678888873
No 260
>PRK09183 transposase/IS protein; Provisional
Probab=97.77 E-value=3.4e-05 Score=80.87 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=53.5
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
...+++|+||||||||+||.+|+..+ +..+..+++.++... +........+...+... .....+|+|||++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~-l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdlg 174 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ-LSTAQRQGRYKTTLQRG-----VMAPRLLIIDEIG 174 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH-HHHHHHCCcHHHHHHHH-----hcCCCEEEEcccc
Confidence 45789999999999999999998765 556666666555421 10000001111222211 1234699999998
Q ss_pred chhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 401 KITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 401 kl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
.+.... ..++.|+++++.
T Consensus 175 ~~~~~~------------~~~~~lf~li~~ 192 (259)
T PRK09183 175 YLPFSQ------------EEANLFFQVIAK 192 (259)
T ss_pred cCCCCh------------HHHHHHHHHHHH
Confidence 754321 256678888863
No 261
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.70 E-value=0.00027 Score=76.71 Aligned_cols=63 Identities=27% Similarity=0.385 Sum_probs=44.6
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
+++.++|.++++..|...+... .. .....+..++|.||+|+|||++++.|-+.+.
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~A-----A~--------------------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSA-----AQ--------------------GLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHH-----Hh--------------------ccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3445899999999987766421 11 1122457899999999999999999998883
Q ss_pred -CCEEEEec
Q 005762 351 -VPFVIADA 358 (678)
Q Consensus 351 -~~fv~id~ 358 (678)
.+++.+..
T Consensus 114 ~y~~Y~l~~ 122 (358)
T PF08298_consen 114 EYPIYTLKG 122 (358)
T ss_pred eEEEEEecC
Confidence 35554433
No 262
>PF05729 NACHT: NACHT domain
Probab=97.70 E-value=0.00045 Score=65.37 Aligned_cols=78 Identities=18% Similarity=0.365 Sum_probs=43.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCC--------C-EEEEeccccccccccccchHHHHHHHHHhhc--------hhHhhh
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNV--------P-FVIADATTLTQAGYVGEDVESILYKLLAQAE--------FNVEAA 389 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~--------~-fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~--------~~v~~a 389 (678)
.++|+|+||+|||++++.++..+.. + ++.+.+.++...... ......+...+.... ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 4899999999999999999977711 1 234444443322110 011122221111111 111234
Q ss_pred cCcEEEEcCccchhhh
Q 005762 390 QQGMVYIDEVDKITKK 405 (678)
Q Consensus 390 ~~gILfIDEIDkl~~~ 405 (678)
...+|+||-+|.+...
T Consensus 81 ~~~llilDglDE~~~~ 96 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQ 96 (166)
T ss_pred CceEEEEechHhcccc
Confidence 5679999999998764
No 263
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00018 Score=86.05 Aligned_cols=95 Identities=24% Similarity=0.341 Sum_probs=65.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh----------CCCEEEEecccccc-ccccccchHHHHHHHHHhhchhHhhhcCcE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l----------~~~fv~id~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gI 393 (678)
++|.+|+|.||+|||.+++-+|+.. +..++.+|...+.. +.|.|+- +..+..+...+.. ...+-|
T Consensus 208 k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~-E~rlk~l~k~v~~---~~~gvI 283 (898)
T KOG1051|consen 208 KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF-EERLKELLKEVES---GGGGVI 283 (898)
T ss_pred CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH-HHHHHHHHHHHhc---CCCcEE
Confidence 5799999999999999999999776 24677778776542 2344433 6666666655432 224558
Q ss_pred EEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 394 LfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
|||||++-+...... .+..++.+.|..++.
T Consensus 284 Lfigelh~lvg~g~~------~~~~d~~nlLkp~L~ 313 (898)
T KOG1051|consen 284 LFLGELHWLVGSGSN------YGAIDAANLLKPLLA 313 (898)
T ss_pred EEecceeeeecCCCc------chHHHHHHhhHHHHh
Confidence 999999998775222 234567777777765
No 264
>PRK06921 hypothetical protein; Provisional
Probab=97.69 E-value=0.00012 Score=77.00 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=29.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s~l 361 (678)
.+++|+|+||||||+|+.+||+.+ +..++.++..++
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 689999999999999999999877 345566665554
No 265
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.64 E-value=0.0017 Score=69.29 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCC------EEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP------FVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~------fv~id~s 359 (678)
+..|.|.|+-|+|||++.+.+-+.+... ++.+|+-
T Consensus 20 ~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w 60 (325)
T PF07693_consen 20 PFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAW 60 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccc
Confidence 4789999999999999999999888443 5555553
No 266
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.62 E-value=0.00011 Score=79.68 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=53.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccccc---ccccchHHHHHHHHHhhchhHhhhcCcEEEEcCc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sg---yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 399 (678)
.+++|+||||||||+||.+||+.+ +..++.+++.++...- +.... ......+... ..--+|+||++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~--~~~~~~~~~l------~~~DLLIIDDl 255 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNND--KELEEVYDLL------INCDLLIIDDL 255 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccc--hhHHHHHHHh------ccCCEEEEecc
Confidence 689999999999999999999987 5677777777654210 00000 0000001110 12259999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
...... +..++.|+.+++.
T Consensus 256 G~e~~t------------~~~~~~Lf~iin~ 274 (329)
T PRK06835 256 GTEKIT------------EFSKSELFNLINK 274 (329)
T ss_pred CCCCCC------------HHHHHHHHHHHHH
Confidence 765322 1266778888874
No 267
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.62 E-value=2.3e-05 Score=98.66 Aligned_cols=123 Identities=26% Similarity=0.306 Sum_probs=86.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccc-cccccchHHHHHHHHHhhchhHhhh-cCcEEEEcCccch
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNVEAA-QQGMVYIDEVDKI 402 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~s-gyvG~~~~~~l~~l~~~a~~~v~~a-~~gILfIDEIDkl 402 (678)
+..+||.||+++|||.+++.+|+..+..+++++-.+.++. .|+|..+.....++--.....|.+. .+..+|+||++..
T Consensus 440 ~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 440 KFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred CCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEecccccc
Confidence 3589999999999999999999999999999887755432 2333110000000000001112222 4569999999977
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEec
Q 005762 403 TKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICG 461 (678)
Q Consensus 403 ~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~t 461 (678)
..+ ++.+|.++++ .+...+|+..+..+.+..++.+.|.|..-+.+
T Consensus 520 ~~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~ 565 (1856)
T KOG1808|consen 520 PHD--------------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYG 565 (1856)
T ss_pred chH--------------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccc
Confidence 665 9999999999 58888999888888888888888888844333
No 268
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.00041 Score=72.73 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=54.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc--------------ccc---cc-cccccchHHHHHHHHHhhchh-
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT--------------TLT---QA-GYVGEDVESILYKLLAQAEFN- 385 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s--------------~l~---~s-gyvG~~~~~~l~~l~~~a~~~- 385 (678)
+..+||+||.|+||..+|.++|+.+-+.--.-.|. |+. .. .-++ ...++++.......
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~---id~ir~l~~~l~~~s 83 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIK---KEDALSIINKLNRPS 83 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCC---HHHHHHHHHHHccCc
Confidence 46799999999999999999998883311000111 111 00 0011 22333333322111
Q ss_pred HhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 386 v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
.+.+..-|++||++|++... ..|+||+.||.
T Consensus 84 ~e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LEE 114 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIEE 114 (261)
T ss_pred hhcCCCEEEEeccHhhhCHH--------------HHHHHHHhhcC
Confidence 11234569999999999987 99999999994
No 269
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.56 E-value=0.00013 Score=70.70 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=36.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
.+|.+...+.|...+. . .....+.+++|+|++|+|||++.+.+...+..+
T Consensus 2 fvgR~~e~~~l~~~l~-~---------------------------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~ 53 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A---------------------------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGG 53 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G---------------------------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHH-H---------------------------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 4788888888877662 0 001124789999999999999999888777332
Q ss_pred -EEEEecccc
Q 005762 353 -FVIADATTL 361 (678)
Q Consensus 353 -fv~id~s~l 361 (678)
++.+++...
T Consensus 54 ~~~~~~~~~~ 63 (185)
T PF13191_consen 54 YVISINCDDS 63 (185)
T ss_dssp -EEEEEEETT
T ss_pred EEEEEEEecc
Confidence 777776655
No 270
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.53 E-value=7.4e-05 Score=67.97 Aligned_cols=31 Identities=42% Similarity=0.777 Sum_probs=27.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
|+|.|+||+||||+|+.||+.++.+++.+|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7999999999999999999999888766655
No 271
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.0027 Score=66.16 Aligned_cols=187 Identities=21% Similarity=0.236 Sum_probs=105.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC---CEEEEeccccccccc------cc-cchHHHHHHHHHhhc----hhHhhh-c
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV---PFVIADATTLTQAGY------VG-EDVESILYKLLAQAE----FNVEAA-Q 390 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~---~fv~id~s~l~~sgy------vG-~~~~~~l~~l~~~a~----~~v~~a-~ 390 (678)
.-+.++|+.|+|||.++|++...++. -.+.++...+..++. .. ..+...+.....+.. ..+... .
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r 131 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKR 131 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 56899999999999999977777743 234566655443211 00 011111111111111 111222 3
Q ss_pred CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHH
Q 005762 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (678)
Q Consensus 391 ~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~ 470 (678)
+-++++||++.+..+ +...|..+.+...-. ++..-+++.|.+. |
T Consensus 132 ~v~l~vdEah~L~~~--------------~le~Lrll~nl~~~~------------------~~~l~ivL~Gqp~-L--- 175 (269)
T COG3267 132 PVVLMVDEAHDLNDS--------------ALEALRLLTNLEEDS------------------SKLLSIVLIGQPK-L--- 175 (269)
T ss_pred CeEEeehhHhhhChh--------------HHHHHHHHHhhcccc------------------cCceeeeecCCcc-c---
Confidence 368999999998876 777777766521110 0111223334321 0
Q ss_pred HHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHH
Q 005762 471 ISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNAL 550 (678)
Q Consensus 471 i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L 550 (678)
..++ ...-..+|..|+++-+.++|++.++....+.. .
T Consensus 176 ---------------------------------~~~l------r~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~----~ 212 (269)
T COG3267 176 ---------------------------------RPRL------RLPVLRELEQRIDIRIELPPLTEAETGLYLRH----R 212 (269)
T ss_pred ---------------------------------chhh------chHHHHhhhheEEEEEecCCcChHHHHHHHHH----H
Confidence 0000 00122367789988899999999988777664 1
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcC
Q 005762 551 GKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEI 604 (678)
Q Consensus 551 ~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~ 604 (678)
++. ....+-.|+++++..|+... +++-++|..++..||-..
T Consensus 213 Le~------a~~~~~l~~~~a~~~i~~~s-------qg~P~lin~~~~~Al~~a 253 (269)
T COG3267 213 LEG------AGLPEPLFSDDALLLIHEAS-------QGIPRLINNLATLALDAA 253 (269)
T ss_pred Hhc------cCCCcccCChhHHHHHHHHh-------ccchHHHHHHHHHHHHHH
Confidence 111 12334458999999999874 235677777777776544
No 272
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.47 E-value=0.0003 Score=66.01 Aligned_cols=33 Identities=45% Similarity=0.607 Sum_probs=26.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
+++|+||||+|||+++..++..+ +.+.+.+++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 37999999999999999999887 4556666554
No 273
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.38 E-value=0.00016 Score=77.81 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~ 362 (678)
..+++|+||+|||||.||.+||+.+ +.....+.+.+|.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI 196 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH
Confidence 3689999999999999999999998 5666666666554
No 274
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.38 E-value=0.00061 Score=74.90 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=25.3
Q ss_pred ccCCcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 323 ~~~~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
..+.++.|+|++|+|||.|.-++...+..
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 35799999999999999999999888743
No 275
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.36 E-value=0.00017 Score=69.37 Aligned_cols=33 Identities=30% Similarity=0.615 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
+..|+|+|+||||||++|+.||+.++.+|+..|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 468999999999999999999999999888544
No 276
>PHA00729 NTP-binding motif containing protein
Probab=97.33 E-value=0.00032 Score=72.12 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=23.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
.+++|+|+||||||+||.+|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999875
No 277
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0004 Score=79.13 Aligned_cols=97 Identities=35% Similarity=0.575 Sum_probs=75.1
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchh
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 403 (678)
++.+++++||||||||++++.+|.. +..+..++..... .+|+|.. +..+...+..+... .++++++||+|.+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~~----~~~ii~~d~~~~~~ 89 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEKL----APSIIFIDEIDALA 89 (494)
T ss_pred CCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHHh----CCCeEeechhhhcc
Confidence 4588999999999999999999999 6666667766665 4677777 67777777776543 55899999999999
Q ss_pred hhhccccccCCCchhHHHHHHHHHHhc
Q 005762 404 KKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 404 ~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
+.+.. ........+...|+..|++
T Consensus 90 ~~~~~---~~~~~~~~v~~~l~~~~d~ 113 (494)
T COG0464 90 PKRSS---DQGEVERRVVAQLLALMDG 113 (494)
T ss_pred cCccc---cccchhhHHHHHHHHhccc
Confidence 98655 2233335688889999885
No 278
>PRK13947 shikimate kinase; Provisional
Probab=97.27 E-value=0.00024 Score=68.84 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=29.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
+|+|.|+||||||++|+.||+.++.+|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 69999999999999999999999999976664
No 279
>PHA02774 E1; Provisional
Probab=97.24 E-value=0.0014 Score=75.47 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=53.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEE-EeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI-ADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~-id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 403 (678)
+..++|+||||||||++|-+|++.++...+. ++..+-. | +..+ ...-|++|||+-.-.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~F---w--------Lqpl----------~d~ki~vlDD~t~~~ 492 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF---W--------LQPL----------ADAKIALLDDATHPC 492 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcccc---c--------cchh----------ccCCEEEEecCcchH
Confidence 5789999999999999999999999655433 5542110 1 1111 122499999993221
Q ss_pred hhhccccccCCCchhHHHHHHHHHHhcceeecCCC
Q 005762 404 KKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 438 (678)
Q Consensus 404 ~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~ 438 (678)
-. -+...|..+|+|..++|+.+
T Consensus 493 w~-------------y~d~~Lrn~LdG~~v~lD~K 514 (613)
T PHA02774 493 WD-------------YIDTYLRNALDGNPVSIDCK 514 (613)
T ss_pred HH-------------HHHHHHHHHcCCCcceeeec
Confidence 11 15667999999988887655
No 280
>PRK07261 topology modulation protein; Provisional
Probab=97.22 E-value=0.00071 Score=66.46 Aligned_cols=43 Identities=30% Similarity=0.587 Sum_probs=34.8
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGED 370 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~ 370 (678)
.|+++|+||+||||+|+.|++.++.+++.+|.-... .+|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~-~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ-PNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec-cccccCC
Confidence 389999999999999999999999999888765443 3454444
No 281
>PRK08118 topology modulation protein; Reviewed
Probab=97.20 E-value=0.00028 Score=69.17 Aligned_cols=33 Identities=39% Similarity=0.700 Sum_probs=30.3
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s 359 (678)
.|+++||||+||||+|+.|++.++.+++.+|.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999999887753
No 282
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.17 E-value=0.00093 Score=74.37 Aligned_cols=101 Identities=22% Similarity=0.357 Sum_probs=61.9
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 399 (678)
...|+++.||+|||||.||.+|+... + -| +++ ...+.++-....+.+ ...-+|+|||+
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-~f--~T~-------------a~Lf~~L~~~~lg~v--~~~DlLI~DEv 269 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG-GT--ITV-------------AKLFYNISTRQIGLV--GRWDVVAFDEV 269 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-Cc--CcH-------------HHHHHHHHHHHHhhh--ccCCEEEEEcC
Confidence 35899999999999999999988762 2 11 111 223333322221211 23469999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCc
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~ 465 (678)
..+.-... .+.++.|...|+ |.... +. ..-+.+.-+++.||+.
T Consensus 270 gylp~~~~----------~~~v~imK~yMesg~fsR-----------G~--~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 270 ATLKFAKP----------KELIGILKNYMESGSFTR-----------GD--ETKSSDASFVFLGNVP 313 (449)
T ss_pred CCCcCCch----------HHHHHHHHHHHHhCceec-----------cc--eeeeeeeEEEEEcccC
Confidence 98654311 247888999999 43321 11 2234666677778865
No 283
>PRK10536 hypothetical protein; Provisional
Probab=97.17 E-value=0.005 Score=64.66 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..++++||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999974
No 284
>PRK00625 shikimate kinase; Provisional
Probab=97.17 E-value=0.00033 Score=69.21 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=29.4
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
+|+|+|.||+||||+++.||+.++.+|+.+|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 69999999999999999999999999977663
No 285
>PRK03839 putative kinase; Provisional
Probab=97.16 E-value=0.00033 Score=68.77 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.2
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.|+|+|+||+||||+++.||+.++.+|+.+|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987655
No 286
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.14 E-value=0.0004 Score=65.65 Aligned_cols=31 Identities=42% Similarity=0.765 Sum_probs=28.4
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
+|+|+|+||+|||++|+.||+.++.+++..|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988655
No 287
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.14 E-value=0.0039 Score=68.09 Aligned_cols=62 Identities=27% Similarity=0.307 Sum_probs=49.0
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
|...|.+.+..++.|...+-+. .. ..++++.|+|-.|||||.+.+.+-+.++
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~--------------------------~~--~~PS~~~iyG~sgTGKT~~~r~~l~~~n 55 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNN--------------------------SC--TIPSIVHIYGHSGTGKTYLVRQLLRKLN 55 (438)
T ss_pred cccCccchHHHHHHHHHHhCCC--------------------------Cc--ccceeEEEeccCCCchhHHHHHHHhhcC
Confidence 4455788888888887766311 00 1368899999999999999999999999
Q ss_pred CCEEEEeccc
Q 005762 351 VPFVIADATT 360 (678)
Q Consensus 351 ~~fv~id~s~ 360 (678)
.+++.++|-+
T Consensus 56 ~~~vw~n~~e 65 (438)
T KOG2543|consen 56 LENVWLNCVE 65 (438)
T ss_pred CcceeeehHH
Confidence 9999998875
No 288
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.07 E-value=0.0019 Score=64.90 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=48.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccccc---ccccchHHHHHHHHHhhchhH-----hhhcCcEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGEDVESILYKLLAQAEFNV-----EAAQQGMV 394 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sg---yvG~~~~~~l~~l~~~a~~~v-----~~a~~gIL 394 (678)
...++.|+||||||++++.+.+.+ +..++.+..+.-.... -.|.. ..-+..++....... ......+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE-AQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS--EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc-hhhHHHHHhcCCcccccccccCCcccEE
Confidence 468889999999999999988777 4566666555211000 00000 001111221111100 02344699
Q ss_pred EEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 395 fIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
+|||+..+... ....|++.+.
T Consensus 98 iVDEasmv~~~--------------~~~~ll~~~~ 118 (196)
T PF13604_consen 98 IVDEASMVDSR--------------QLARLLRLAK 118 (196)
T ss_dssp EESSGGG-BHH--------------HHHHHHHHS-
T ss_pred EEecccccCHH--------------HHHHHHHHHH
Confidence 99999998776 6666777765
No 289
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.06 E-value=0.1 Score=59.00 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=30.4
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l 361 (678)
.+..++|+|++|+||||++..||..+ +.....+++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 46789999999999999999999877 455666666543
No 290
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.05 E-value=0.0014 Score=72.50 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=48.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC-----CEEEEecccc---------------ccccccccchHHHHH---HHHHhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV-----PFVIADATTL---------------TQAGYVGEDVESILY---KLLAQA 382 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~-----~fv~id~s~l---------------~~sgyvG~~~~~~l~---~l~~~a 382 (678)
...+++||||||||+|++.|++.... ..+.+-..+. ..+. ........+. ..+..+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st-~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST-FDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC-CCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999987732 2111111111 1111 1122233322 344445
Q ss_pred chhHhhhcCcEEEEcCccchhhhh
Q 005762 383 EFNVEAAQQGMVYIDEVDKITKKA 406 (678)
Q Consensus 383 ~~~v~~a~~gILfIDEIDkl~~~~ 406 (678)
..........+||||||+++....
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHH
Confidence 554555577899999999998753
No 291
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00046 Score=68.05 Aligned_cols=33 Identities=36% Similarity=0.758 Sum_probs=30.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
.+|+|+|++|+||||+.+.||+.|+.+|+..|.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 579999999999999999999999999986664
No 292
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.00 E-value=0.00087 Score=68.81 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=42.0
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccc-----cccc---hHHHHHHHHHhhchhHhhhcCcEEE
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGY-----VGED---VESILYKLLAQAEFNVEAAQQGMVY 395 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgy-----vG~~---~~~~l~~l~~~a~~~v~~a~~gILf 395 (678)
.+..+||+|+||+|||++|+.++. ..-++..|.+.-.-.+. +-.+ ....+.+.+..... ..+..-+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~--~~~~ydtVV 86 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNI--QAVKYDNIV 86 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHh--ccccCCEEE
Confidence 356799999999999999999873 12244455532110010 0000 01122222222111 123456999
Q ss_pred EcCccchhh
Q 005762 396 IDEVDKITK 404 (678)
Q Consensus 396 IDEIDkl~~ 404 (678)
||+|+.+..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999998765
No 293
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.00 E-value=0.0015 Score=68.23 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=47.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCC------EEEEecc------ccccc-------cccccchHHHH---HHHHHhh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP------FVIADAT------TLTQA-------GYVGEDVESIL---YKLLAQA 382 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~------fv~id~s------~l~~s-------gyvG~~~~~~l---~~l~~~a 382 (678)
...++|+||+|+|||+|++.+++.+... ++.+... ++... .-.+......+ ......+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3679999999999999999999887532 2221111 00000 00122222222 2333333
Q ss_pred chhHhhhcCcEEEEcCccchhhhh
Q 005762 383 EFNVEAAQQGMVYIDEVDKITKKA 406 (678)
Q Consensus 383 ~~~v~~a~~gILfIDEIDkl~~~~ 406 (678)
..........+|||||++++...-
T Consensus 96 ~~~~~~G~~vll~iDei~r~a~a~ 119 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRLARAY 119 (249)
T ss_pred HHHHHCCCCEEEEEECHHHhhhhh
Confidence 333333456799999999987753
No 294
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.99 E-value=0.0012 Score=65.02 Aligned_cols=23 Identities=35% Similarity=0.712 Sum_probs=20.5
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHh
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l 349 (678)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 295
>PRK06217 hypothetical protein; Validated
Probab=96.99 E-value=0.00061 Score=67.32 Aligned_cols=32 Identities=31% Similarity=0.610 Sum_probs=29.3
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
.|+|.|+||+||||+|+.|++.++.+++.+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 59999999999999999999999999877664
No 296
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0029 Score=65.06 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh--------CCCEEEEeccccccccccccchHHHHH--HHHHhh------chhHhh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV--------NVPFVIADATTLTQAGYVGEDVESILY--KLLAQA------EFNVEA 388 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l--------~~~fv~id~s~l~~sgyvG~~~~~~l~--~l~~~a------~~~v~~ 388 (678)
+.|.|+.|||||||||+.|-||+.+ ......+|-.+=...+..|...-..-. +.+... ...++.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 5789999999999999999999887 235667776643333444433111100 000000 112445
Q ss_pred hcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 389 a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
..|-|+++|||.... -..+++.+++
T Consensus 217 m~PEViIvDEIGt~~----------------d~~A~~ta~~ 241 (308)
T COG3854 217 MSPEVIIVDEIGTEE----------------DALAILTALH 241 (308)
T ss_pred cCCcEEEEeccccHH----------------HHHHHHHHHh
Confidence 678899999998643 3346778877
No 297
>PRK13948 shikimate kinase; Provisional
Probab=96.99 E-value=0.00072 Score=67.43 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=31.5
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
++.+|+|+|.+|+|||++++.||+.++.+|+..|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4689999999999999999999999999998666
No 298
>PRK13949 shikimate kinase; Provisional
Probab=96.98 E-value=0.0006 Score=66.92 Aligned_cols=33 Identities=39% Similarity=0.661 Sum_probs=29.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
.+|+|+|+||+|||++++.||+.++.+|+..|.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 369999999999999999999999999987763
No 299
>PRK14532 adenylate kinase; Provisional
Probab=96.96 E-value=0.00061 Score=67.26 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=27.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
+++|.||||+||||+|+.||+.++.+++ +..++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~ 34 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDM 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHH
Confidence 5899999999999999999999987664 44444
No 300
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.00068 Score=65.28 Aligned_cols=36 Identities=31% Similarity=0.669 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
..|||++|-|||||||++..||..++.+++ +++++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i--~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYI--EISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceE--ehhhHH
Confidence 479999999999999999999999988875 445544
No 301
>PRK14530 adenylate kinase; Provisional
Probab=96.92 E-value=0.00082 Score=68.10 Aligned_cols=31 Identities=32% Similarity=0.546 Sum_probs=27.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
..|+|.||||+||||+|+.||+.++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 5799999999999999999999998776533
No 302
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.90 E-value=0.007 Score=67.48 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=50.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhh
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~ 406 (678)
.+++.||-.|||||+++.+.+.+-..++.++.-++.... ......+.... .... . ....||||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---~~l~d~~~~~~-~~~~---~-~~~yifLDEIq~v~~-- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---IELLDLLRAYI-ELKE---R-EKSYIFLDEIQNVPD-- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---hhHHHHHHHHH-Hhhc---c-CCceEEEecccCchh--
Confidence 799999999999999999998885556656655544221 11111111111 1111 1 446999999997643
Q ss_pred ccccccCCCchhHHHHHHHHHHh
Q 005762 407 ESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 407 ~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.+..|..+.|
T Consensus 109 -------------W~~~lk~l~d 118 (398)
T COG1373 109 -------------WERALKYLYD 118 (398)
T ss_pred -------------HHHHHHHHHc
Confidence 6666777766
No 303
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.89 E-value=0.00051 Score=64.15 Aligned_cols=26 Identities=46% Similarity=0.792 Sum_probs=23.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
|+|.||||+||||+|+.+++.++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 79999999999999999999998333
No 304
>PRK13946 shikimate kinase; Provisional
Probab=96.86 E-value=0.00089 Score=66.33 Aligned_cols=34 Identities=38% Similarity=0.683 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
+.+|+|+|.+|+|||++++.||+.++.+|+..|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 5789999999999999999999999999987774
No 305
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.84 E-value=0.0011 Score=65.26 Aligned_cols=34 Identities=38% Similarity=0.768 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
+.+|+|+|++|+|||++++.||+.++.+|+..|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4679999999999999999999999999987775
No 306
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.83 E-value=0.00099 Score=62.26 Aligned_cols=30 Identities=37% Similarity=0.739 Sum_probs=28.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
|++.|+||+|||++|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999998776
No 307
>PRK14531 adenylate kinase; Provisional
Probab=96.83 E-value=0.0011 Score=65.67 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=28.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
..|+|+||||+||||+++.||+.++.+++ ++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~ 36 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDL 36 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccH
Confidence 46999999999999999999999987765 44443
No 308
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.81 E-value=0.16 Score=57.28 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~ 360 (678)
+..++|+|++|+||||++..||..+ +.....+++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 4689999999999999999999877 55666666643
No 309
>PRK14974 cell division protein FtsY; Provisional
Probab=96.80 E-value=0.014 Score=63.69 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
+..++|+|+||+||||++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4689999999999999999998776 3445445543
No 310
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.80 E-value=0.001 Score=65.10 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=27.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
|+|+|+||+||||+|+.||+.++. ..++++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 799999999999999999999975 445665544
No 311
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.80 E-value=0.001 Score=65.48 Aligned_cols=33 Identities=39% Similarity=0.726 Sum_probs=27.3
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
+|+|+|+||+||||+|+.||+.++.+++ +..++
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l 33 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHI--STGDL 33 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHH
Confidence 3899999999999999999999877654 44443
No 312
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.78 E-value=0.0013 Score=63.87 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=29.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
.+++|+|.+|+|||++++.||+.++.+|+..|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 468999999999999999999999999986654
No 313
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.78 E-value=0.0011 Score=62.91 Aligned_cols=28 Identities=39% Similarity=0.783 Sum_probs=25.1
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
++|.|+||+||||+|+.|++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876653
No 314
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.77 E-value=0.0037 Score=61.04 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=24.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
+|+.||||||||+++..++... +.+.+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7999999999999998876544 456655554
No 315
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.75 E-value=0.0039 Score=69.23 Aligned_cols=80 Identities=16% Similarity=0.295 Sum_probs=46.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCC------EEEEe-c--cc---c--------ccccccccchHHH---HHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP------FVIAD-A--TT---L--------TQAGYVGEDVESI---LYKLLAQ 381 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~------fv~id-~--s~---l--------~~sgyvG~~~~~~---l~~l~~~ 381 (678)
...++|+||||+|||+|++.|++.+... ++.+. - .+ + ..+. .+...... .......
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast-~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVAST-FDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEec-CCCChHHHHHHHHHHHHH
Confidence 4679999999999999999999986322 11111 1 00 0 0010 11121221 1233333
Q ss_pred hchhHhhhcCcEEEEcCccchhhh
Q 005762 382 AEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 382 a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
+.......+..||||||++++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHHHHH
Confidence 444444456679999999999875
No 316
>PRK06762 hypothetical protein; Provisional
Probab=96.73 E-value=0.0016 Score=62.88 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=29.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
.-++|.|+||+||||+|+.|++.++..++.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 458999999999999999999998655666665443
No 317
>PF14516 AAA_35: AAA-like domain
Probab=96.73 E-value=0.042 Score=59.76 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~ 362 (678)
...+.+.||..+|||++...+.+.+ +...+.+|+..+.
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~ 71 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG 71 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence 3679999999999999998887666 6778888888653
No 318
>PRK04296 thymidine kinase; Provisional
Probab=96.72 E-value=0.0058 Score=61.03 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=23.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~i 356 (678)
.-.|++||+|+|||+++..++..+ +...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 357999999999999998887665 4454444
No 319
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.72 E-value=0.0011 Score=63.75 Aligned_cols=28 Identities=39% Similarity=0.679 Sum_probs=24.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
++|.||+|+||||+|+.|++.++.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999876653
No 320
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.70 E-value=0.0024 Score=68.65 Aligned_cols=33 Identities=36% Similarity=0.686 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
+.+|+|+|.+|+|||++++.+|+.++.+|+.+|
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 478999999999999999999999999999555
No 321
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.68 E-value=0.0038 Score=60.87 Aligned_cols=37 Identities=35% Similarity=0.543 Sum_probs=32.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~ 362 (678)
..|+|+|.||+||||||++|.+.| +.+.+.+|...+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 569999999999999999999888 6789999988765
No 322
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.67 E-value=0.0029 Score=61.04 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=24.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
|+|+|++|||||||++.|++. +.+++.--+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 799999999999999999999 8887744444444
No 323
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.67 E-value=0.0013 Score=64.36 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=29.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s 359 (678)
..++|.|+||+||||+|+.|++.+..+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 5699999999999999999999998777755544
No 324
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.008 Score=58.80 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++++|+||+||||++..||+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 469999999999999999999888
No 325
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.62 E-value=0.0062 Score=58.41 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=28.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l 361 (678)
++|.|+||+|||++|+.|+..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 556666665433
No 326
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.60 E-value=0.0018 Score=66.84 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=27.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
..|+|.||||+||||+|+.||+.++.+++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999987775443
No 327
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.60 E-value=0.016 Score=58.21 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC-CCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN-VPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~-~~fv~id~s~l 361 (678)
+..|.|.|++|+|||||++.|++.++ ..+..++..++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 46799999999999999999999984 33444555443
No 328
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.02 Score=63.66 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
+..++|+||+|+||||++..||..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998765
No 329
>PRK14528 adenylate kinase; Provisional
Probab=96.52 E-value=0.0022 Score=63.84 Aligned_cols=30 Identities=37% Similarity=0.739 Sum_probs=26.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
.++++.||||+||||+|+.||+.++.+++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999999887654
No 330
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.45 E-value=0.013 Score=58.84 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=22.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
.-+++.||+|+||||+++++++.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4589999999999999999888774
No 331
>PRK02496 adk adenylate kinase; Provisional
Probab=96.42 E-value=0.0026 Score=62.65 Aligned_cols=30 Identities=33% Similarity=0.739 Sum_probs=26.1
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
.++|.||||+||||+|+.||+.++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998766533
No 332
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0026 Score=62.17 Aligned_cols=28 Identities=39% Similarity=0.643 Sum_probs=26.1
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
|.+.|||||||||+|+.||+.++.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 7789999999999999999999999874
No 333
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.40 E-value=0.0024 Score=62.35 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=27.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~ 360 (678)
..++|.||||+||||+|+.|++.++..+ +++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~ 36 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGD 36 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHH
Confidence 4689999999999999999999987654 44444
No 334
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.39 E-value=0.021 Score=57.72 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=57.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
..++|.|+-|+|||+..+.|.... +.-+..... . ...+..+. ..-||.|||++.+.+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~-----~---kd~~~~l~----------~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD-----D---KDFLEQLQ----------GKWIVELDELDGLSKK 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCccccCC-----C---cHHHHHHH----------HhHheeHHHHhhcchh
Confidence 578999999999999999997652 111111111 0 11111111 2249999999998754
Q ss_pred hccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCc
Q 005762 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (678)
Q Consensus 406 ~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~ 465 (678)
.++.|..+|......+ +.+......--..+.+||.|+|..
T Consensus 111 --------------~~~~lK~~iT~~~~~~------R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 111 --------------DVEALKSFITRRTDTY------RPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred --------------hHHHHHHHhcccceee------ecCCcCcceeeceeEEEEeccCCc
Confidence 5677888876433332 122223333344556777777743
No 335
>PRK06547 hypothetical protein; Provisional
Probab=96.38 E-value=0.0029 Score=62.45 Aligned_cols=33 Identities=42% Similarity=0.525 Sum_probs=28.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
..|++.|++|+|||++|+.|++.++.+++.+|-
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~ 48 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHLDD 48 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeecccc
Confidence 568888999999999999999999888775543
No 336
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.36 E-value=0.011 Score=59.19 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~ 360 (678)
...++++||||+|||+++..++... +.+.+.++...
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4779999999999999999888654 55677777754
No 337
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.34 E-value=0.0031 Score=63.72 Aligned_cols=28 Identities=39% Similarity=0.724 Sum_probs=25.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
|+|+||||+||||+|+.||+.++.+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7999999999999999999999876654
No 338
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.011 Score=58.72 Aligned_cols=73 Identities=21% Similarity=0.291 Sum_probs=48.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc--cccccchHHHHHHHHHhhchhHhhhcCcEEEEc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA--GYVGEDVESILYKLLAQAEFNVEAAQQGMVYID 397 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s--gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfID 397 (678)
+..+.|+|.+|+||||||.++.+.| +...+.+|...+... .-.|.+.+.....+.+-+...-..+..|+|+|=
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviv 100 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIV 100 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 3689999999999999999999988 678888998765421 012444455554444433322223455666654
No 339
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.31 E-value=0.0029 Score=57.44 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=21.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l 349 (678)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 340
>PHA02624 large T antigen; Provisional
Probab=96.30 E-value=0.035 Score=64.46 Aligned_cols=91 Identities=26% Similarity=0.238 Sum_probs=57.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 404 (678)
+..+||+||||||||+++.+|.+.++...+.+++..-...-| +.-+ ...-+++||++-.-.-
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~Fw--------L~pl----------~D~~~~l~dD~t~~~~ 492 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFE--------LGCA----------IDQFMVVFEDVKGQPA 492 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHH--------hhhh----------hhceEEEeeecccccc
Confidence 578999999999999999999999976666676443110000 1111 1335889999864333
Q ss_pred hhccccccCCCchhH--HHHHHHHHHhcc-eeecCCC
Q 005762 405 KAESLNISRDVSGEG--VQQALLKMLEGT-IVNVPEK 438 (678)
Q Consensus 405 ~~~~~~~~~d~s~~~--vq~~LL~~LEg~-~v~v~~~ 438 (678)
.... -.+|.. -...|...|||. .++++.+
T Consensus 493 ~~~~-----Lp~G~~~dNl~~lRn~LDG~V~v~ld~K 524 (647)
T PHA02624 493 DNKD-----LPSGQGMNNLDNLRDYLDGSVPVNLEKK 524 (647)
T ss_pred cccc-----CCcccccchhhHHHhhcCCCCccccchh
Confidence 1110 011111 347899999987 7776544
No 341
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.26 E-value=0.0037 Score=63.40 Aligned_cols=29 Identities=34% Similarity=0.693 Sum_probs=25.8
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
.|+++||||+||||+|+.||+.++.+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 38999999999999999999999876654
No 342
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.25 E-value=0.011 Score=71.50 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=33.9
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
.++++||||+|||+.|.+.|+.++..+++.|+++..
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R 394 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR 394 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccc
Confidence 479999999999999999999999999999999766
No 343
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.0034 Score=62.42 Aligned_cols=34 Identities=35% Similarity=0.658 Sum_probs=27.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
.|+|.||||+||||+|+.||+.+ ++..+|..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHh
Confidence 48999999999999999999995 45556655544
No 344
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.22 E-value=0.0084 Score=62.17 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=27.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l 361 (678)
|+|+|+||+||||+|+.|++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7999999999999999999988 456666665434
No 345
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.21 E-value=0.045 Score=58.21 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh----C-CCEEEEeccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV----N-VPFVIADATT 360 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l----~-~~fv~id~s~ 360 (678)
+..++|+||+|+||||++..||..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 5689999999999999999998766 2 4555566544
No 346
>PLN02200 adenylate kinase family protein
Probab=96.20 E-value=0.0044 Score=64.15 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
+..+++.|+||+||||+|+.||+.++.+ .++++++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 4578999999999999999999999764 46666654
No 347
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.16 E-value=0.04 Score=61.66 Aligned_cols=173 Identities=19% Similarity=0.289 Sum_probs=101.7
Q ss_pred HHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEe
Q 005762 373 SILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMD 452 (678)
Q Consensus 373 ~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~id 452 (678)
+.+..++..+.+ .+-+|+|||++.+-+- .++.+++...+.|+++++... +| .
T Consensus 227 k~L~~~lr~aGy-----~GLlI~lDE~e~l~kl------~~~~~R~~~ye~lr~lidd~~-----~G------------~ 278 (416)
T PF10923_consen 227 KGLARFLRDAGY-----KGLLILLDELENLYKL------RNDQAREKNYEALRQLIDDID-----QG------------R 278 (416)
T ss_pred HHHHHHHHHcCC-----CceEEEEechHHHHhc------CChHHHHHHHHHHHHHHHHHh-----cC------------C
Confidence 344455555544 4559999999988654 445556778999999998311 11 2
Q ss_pred cCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecC
Q 005762 453 TKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLT 532 (678)
Q Consensus 453 tsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~ 532 (678)
..++.||++|++.-++ ..++ | + ....+|.+++..+- .-.+.|.+-...+|.+.
T Consensus 279 ~~gL~~~~~gTPef~e---D~rr-----G------------v---~sY~AL~~RL~~~~----~~~~~~~n~~~pvIrL~ 331 (416)
T PF10923_consen 279 APGLYFVFAGTPEFFE---DGRR-----G------------V---YSYEALAQRLAEEF----FADDGFDNLRAPVIRLQ 331 (416)
T ss_pred CCceEEEEeeCHHHhh---Cccc-----c------------c---cccHHHHHHHhccc----cccccccCccCceecCC
Confidence 3456777888754221 1110 0 0 11234445543211 12456677777799999
Q ss_pred CcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCH--HHHHHHHHH--HHHHHHhcCCCC
Q 005762 533 ALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGA--RGLRAILES--ILTEAMYEIPDV 607 (678)
Q Consensus 533 ~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GA--R~Lr~iIE~--il~~a~~~~p~~ 607 (678)
+|+.+++..++.+ +..-|.. ..+....++++.+..+++....+-.+. +.-|.+|.. -+++.+.+.|+.
T Consensus 332 ~l~~eel~~l~~k----lr~i~a~---~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv~~Ld~~~q~p~~ 403 (416)
T PF10923_consen 332 PLTPEELLELLEK----LRDIYAE---AYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFVDVLDILEQNPDF 403 (416)
T ss_pred CCCHHHHHHHHHH----HHHHHHh---hCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999988774 4443433 234557799999999998865443332 111333333 345556665554
No 348
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.14 E-value=0.025 Score=56.94 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+.|.||+|+||||++++|+..+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5688999999999999999999885
No 349
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.14 E-value=0.022 Score=64.80 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.+.+||+||+||||||.++.|+++++..+++-.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 367999999999999999999999998777655
No 350
>PF13245 AAA_19: Part of AAA domain
Probab=96.08 E-value=0.0087 Score=51.25 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=19.1
Q ss_pred CcEEEEcCCCcHHH-HHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKT-LLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT-~LAralA~~l 349 (678)
..+++.|||||||| ++++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44666999999999 6677777776
No 351
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.07 E-value=0.014 Score=61.79 Aligned_cols=77 Identities=25% Similarity=0.276 Sum_probs=43.4
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccc--cccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccch
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT--QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~--~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 402 (678)
|+|+|-||+|||++|+.|++.+ +...+.++-.++. ...|.....++.++..+...-... .....||++|....+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~-ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA-LSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH-HTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh-hccCeEEEEeCCchH
Confidence 8999999999999999999987 4567777754433 223544444666666554432221 134579999998877
Q ss_pred hhh
Q 005762 403 TKK 405 (678)
Q Consensus 403 ~~~ 405 (678)
-..
T Consensus 83 Kg~ 85 (270)
T PF08433_consen 83 KGM 85 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 352
>PLN02199 shikimate kinase
Probab=96.06 E-value=0.0057 Score=65.39 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
..+|+|+|.+|+|||++++.+|+.++.+|+..|.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 4789999999999999999999999999976664
No 353
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.05 E-value=0.01 Score=64.35 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=31.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
..++|.|++|+|||||++.|++.++.+++.--+.++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 4699999999999999999999999988766655444
No 354
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.0041 Score=61.32 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=26.0
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.++++|.|||||||+|+.|+ .++.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 8888776544
No 355
>PHA01747 putative ATP-dependent protease
Probab=96.04 E-value=0.029 Score=61.43 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=48.7
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhh----chhHhhhcCcEEEEcCc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA----EFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a----~~~v~~a~~gILfIDEI 399 (678)
..-|++=.||.|||||++-+-+.+....-+ +....+ +.++|-.. .+.| ...-+|++|||
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp~~i---SGG~~T------------vA~LFyN~~t~~~GLV--g~~D~VaFDEV 251 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFNFRY---YTEPPT------------YANLVYDAKTNALGLV--FLSNGLIFDEI 251 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCCcee---eCCCCc------------hHHheEecCCCceeEE--eeccEEEEEcc
Confidence 468999999999999999998877553221 222211 11222111 1111 01238999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
..+..+. ..++.+.|...|+
T Consensus 252 a~i~f~~----------~kdiv~IMKdYMe 271 (425)
T PHA01747 252 QTWKDSN----------MRAINSTLSTGME 271 (425)
T ss_pred ccccCCC----------HHHHHHHHHHHhh
Confidence 9986431 1248889999999
No 356
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.03 E-value=0.016 Score=59.29 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
..+.++++|+||+|||+++..++... +.+.+.++..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 35789999999999999999986443 4555555543
No 357
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.02 E-value=0.034 Score=56.10 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|.||+|+||||.+-.||..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 569999999999999988888666
No 358
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.01 E-value=0.023 Score=59.38 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...+.|+|++|+|||+||+.+++.
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCH
T ss_pred eEEEEEEcCCcCCcceeeeecccc
Confidence 368999999999999999999977
No 359
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.01 E-value=0.0099 Score=49.59 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=20.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l 349 (678)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999996
No 360
>PRK04182 cytidylate kinase; Provisional
Probab=96.00 E-value=0.006 Score=59.04 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=26.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
.|+|.|++|+||||+|+.||+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999988764
No 361
>PRK14527 adenylate kinase; Provisional
Probab=95.99 E-value=0.0049 Score=61.23 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
+..++++||||+||||+|+.||+.++...+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 356999999999999999999999876544
No 362
>PLN02674 adenylate kinase
Probab=95.99 E-value=0.0062 Score=63.54 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=29.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
.+++|.||||+||||+|+.||+.++.++ +++.++.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 5799999999999999999999998654 5555543
No 363
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.98 E-value=0.0055 Score=64.91 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=25.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-CCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-~~~fv~i 356 (678)
..++|.|+||+||||+|+.|++.+ +..++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 458999999999999999999998 5554443
No 364
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.95 E-value=0.024 Score=60.92 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=47.3
Q ss_pred HHHHHHhhhh---cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHH
Q 005762 264 PKEICKGLDK---FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (678)
Q Consensus 264 p~el~~~Ld~---~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~ 340 (678)
..++++.|.+ .++.+++..+.+..+|...+...-.... ..+....... .+-.+++.|++|||||+
T Consensus 40 A~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~~~y-------~~~~~i~~~~-----~p~iIlI~G~sgsGKSt 107 (301)
T PRK04220 40 ASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVAEKY-------LLWRRIRKSK-----EPIIILIGGASGVGTST 107 (301)
T ss_pred HHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHHHHH-------HHHHHHhcCC-----CCEEEEEECCCCCCHHH
Confidence 4445555543 4788888888777777643221110000 0000000000 23579999999999999
Q ss_pred HHHHHHHHhCCCE
Q 005762 341 LAKTLARHVNVPF 353 (678)
Q Consensus 341 LAralA~~l~~~f 353 (678)
+|..||+.++.+.
T Consensus 108 lA~~La~~l~~~~ 120 (301)
T PRK04220 108 IAFELASRLGIRS 120 (301)
T ss_pred HHHHHHHHhCCCE
Confidence 9999999998874
No 365
>PRK14526 adenylate kinase; Provisional
Probab=95.94 E-value=0.0064 Score=62.02 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=27.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
+++|+||||+||||+++.||+.++.++ +++.++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence 489999999999999999999987665 4455443
No 366
>PRK04040 adenylate kinase; Provisional
Probab=95.94 E-value=0.0067 Score=60.70 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=24.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh--CCCE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV--NVPF 353 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l--~~~f 353 (678)
..++++|+||+||||+++.+++.+ +.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 468999999999999999999999 4444
No 367
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.92 E-value=0.0056 Score=58.86 Aligned_cols=30 Identities=40% Similarity=0.648 Sum_probs=26.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
.|++.|++|+|||++|+.||+.++.+++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 389999999999999999999999887543
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=95.91 E-value=1 Score=50.90 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s~l 361 (678)
+..++|+|++|+||||++-.||..+ +.....+++..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 5789999999999999888888765 455666666543
No 369
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.91 E-value=0.016 Score=63.37 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=22.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+++.|.||||||.||-.+++.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 568999999999999999999887
No 370
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.88 E-value=0.026 Score=67.64 Aligned_cols=88 Identities=24% Similarity=0.362 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---C--CCEEEEeccc-----cccccccccchHHHHHHHHHhhchh-----Hh-h
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---N--VPFVIADATT-----LTQAGYVGEDVESILYKLLAQAEFN-----VE-A 388 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~--~~fv~id~s~-----l~~sgyvG~~~~~~l~~l~~~a~~~-----v~-~ 388 (678)
...++|.|+||||||++++++.+.+ + .+++.+..+. +.+ ..|.. ..-+..++...... .. .
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e--~~g~~-a~Tih~lL~~~~~~~~~~~~~~~ 414 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE--VTGLT-ASTIHRLLGYGPDTFRHNHLEDP 414 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH--hcCCc-cccHHHHhhccCCccchhhhhcc
Confidence 3579999999999999999998766 3 3333333331 111 11211 12233333321110 00 1
Q ss_pred hcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 389 a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
....+|+|||+..+... ....|++.+.
T Consensus 415 ~~~~llIvDEaSMvd~~--------------~~~~Ll~~~~ 441 (720)
T TIGR01448 415 IDCDLLIVDESSMMDTW--------------LALSLLAALP 441 (720)
T ss_pred ccCCEEEEeccccCCHH--------------HHHHHHHhCC
Confidence 23469999999988765 6677777664
No 371
>PRK01184 hypothetical protein; Provisional
Probab=95.88 E-value=0.007 Score=59.50 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=24.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
.|+|+|+||+||||+++ +++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58999999999999998 778888777544
No 372
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.87 E-value=0.03 Score=59.24 Aligned_cols=72 Identities=24% Similarity=0.327 Sum_probs=48.4
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccch
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 402 (678)
+.+|+||.|..|+||+++++..|-..+..++.+..+. +|--.+....+..++..+.. ..++.+++|+|-+-.
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~ag~---~~~~~vfll~d~qi~ 101 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK----GYSIKDFKEDLKKALQKAGI---KGKPTVFLLTDSQIV 101 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST----TTHHHHHHHHHHHHHHHHHC---S-S-EEEEEECCCSS
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC----CcCHHHHHHHHHHHHHHHhc---cCCCeEEEecCcccc
Confidence 3589999999999999999999999998888877653 23222233445555554432 235678888886643
No 373
>PRK08233 hypothetical protein; Provisional
Probab=95.87 E-value=0.0086 Score=58.18 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=27.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC-CCEEEEeccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN-VPFVIADATT 360 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~-~~fv~id~s~ 360 (678)
..|.+.|+||+||||+|+.|+..++ ...+..|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~ 39 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYD 39 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEE
Confidence 4588899999999999999999985 4555555543
No 374
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.053 Score=55.60 Aligned_cols=104 Identities=21% Similarity=0.365 Sum_probs=57.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc-ccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT-TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s-~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 404 (678)
.-|.+.|++|+||||+|+.|+..++...+.+=+- ++ |.... . . .+ .....+-.|..+.+.-
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y----Yk~~~--~-~--~~---------~~~~~~n~d~p~A~D~ 70 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY----YKDQS--H-L--PF---------EERNKINYDHPEAFDL 70 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc----ccchh--h-c--CH---------hhcCCcCccChhhhcH
Confidence 4688999999999999999999998653333222 22 11111 0 0 00 0112334454444433
Q ss_pred hhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCC-CeEEEecCcceEEe
Q 005762 405 KAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG-DSIQMDTKDILFIC 460 (678)
Q Consensus 405 ~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~-~~i~idtsNilfI~ 460 (678)
+ -....|..+++|..+.+|--....+... ..+.+.-.++++|.
T Consensus 71 d-------------Ll~~~L~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvE 114 (218)
T COG0572 71 D-------------LLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVE 114 (218)
T ss_pred H-------------HHHHHHHHHHcCCcccccccchhcccccCCccccCCCcEEEEe
Confidence 3 2556677777788887765433333322 34455555565554
No 375
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.85 E-value=0.0068 Score=60.04 Aligned_cols=30 Identities=33% Similarity=0.600 Sum_probs=25.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
..++|.||+|+|||||++.|+..++.+|+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 468999999999999999999988765543
No 376
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.82 E-value=0.028 Score=56.28 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l 361 (678)
+..+.|+|++|+||||+|+.|++.+ +...+.+|...+
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 4679999999999999999999987 345666776543
No 377
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.82 E-value=0.047 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.--+.|.||+|||||||.+.||...
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999999877
No 378
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.79 E-value=0.021 Score=62.78 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
+.++++.|+.|||||++.++|...+..
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 478999999999999999999988843
No 379
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.78 E-value=0.035 Score=60.64 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=22.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+++.||+|+||||+.+++.+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6799999999999999999998774
No 380
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.78 E-value=0.0086 Score=61.14 Aligned_cols=36 Identities=39% Similarity=0.582 Sum_probs=28.4
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
.++|+||||||||.+|-.+|+.++.|++..|.-..-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y 38 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY 38 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence 479999999999999999999999999999976543
No 381
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.77 E-value=0.0076 Score=57.47 Aligned_cols=31 Identities=39% Similarity=0.574 Sum_probs=25.5
Q ss_pred EEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 330 LMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 330 L~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
|.||||+||||+|+.||+.++. +.+++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 6899999999999999999865 456665554
No 382
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.038 Score=61.15 Aligned_cols=26 Identities=42% Similarity=0.557 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
....++|+||+|+||||++..||..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999754
No 383
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.0087 Score=58.15 Aligned_cols=34 Identities=32% Similarity=0.581 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.+..+++.|++|+||||+++++++.++.+|+.-|
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD 44 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD 44 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccc
Confidence 4678999999999999999999999999996444
No 384
>PF13479 AAA_24: AAA domain
Probab=95.69 E-value=0.017 Score=58.67 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=39.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCE-EEEeccccc-----cccccccchHHHHHHHHHhhchhHhhhcCcEEEEcC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPF-VIADATTLT-----QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~f-v~id~s~l~-----~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 398 (678)
+-.++|+|+||+|||++|..+ ..++ +.++.+... ....+-...-..+.+.+...... ...--+|+||.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~--~~~y~tiVIDs 76 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED--EADYDTIVIDS 76 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc--cCCCCEEEEEC
Confidence 357999999999999999888 3333 334444211 01111111122333333221111 12345999999
Q ss_pred ccchhh
Q 005762 399 VDKITK 404 (678)
Q Consensus 399 IDkl~~ 404 (678)
++.+-.
T Consensus 77 is~~~~ 82 (213)
T PF13479_consen 77 ISWLED 82 (213)
T ss_pred HHHHHH
Confidence 988643
No 385
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.69 E-value=0.022 Score=55.36 Aligned_cols=34 Identities=35% Similarity=0.428 Sum_probs=27.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~ 360 (678)
.+++.|+||+|||+++..+|..+ +...+.+++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 47899999999999999999876 55666777653
No 386
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.69 E-value=0.046 Score=54.25 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=18.6
Q ss_pred EEEEcCCCcHHHHHHHHHHH
Q 005762 328 VLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~ 347 (678)
++|+||.|.|||++.|.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999983
No 387
>PLN02165 adenylate isopentenyltransferase
Probab=95.68 E-value=0.009 Score=64.93 Aligned_cols=35 Identities=34% Similarity=0.496 Sum_probs=30.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s 359 (678)
...++|+||+|+|||+||..||+.++..++..|.-
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 35799999999999999999999998877665554
No 388
>PRK14529 adenylate kinase; Provisional
Probab=95.66 E-value=0.0082 Score=61.85 Aligned_cols=34 Identities=24% Similarity=0.571 Sum_probs=28.1
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
+|+|.||||+||||+|+.||+.++.+++ +..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 4899999999999999999999987764 444443
No 389
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.66 E-value=0.015 Score=64.32 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
..-++|.|+||+|||+++..+|..+ +.+.+.++..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3679999999999999999988665 3466666654
No 390
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.64 E-value=0.032 Score=55.33 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+++|.||+|+||||++++|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 37899999999999999999998873
No 391
>PRK06696 uridine kinase; Validated
Probab=95.63 E-value=0.013 Score=59.91 Aligned_cols=38 Identities=32% Similarity=0.400 Sum_probs=32.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~ 362 (678)
+..|.+.|++|+||||+|+.|++.+ +.+.+.+.+.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3579999999999999999999999 5677777776664
No 392
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.59 E-value=0.033 Score=61.45 Aligned_cols=104 Identities=18% Similarity=0.313 Sum_probs=55.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC-----CEE--EEecc-----cccc-------ccccccchHHHH---HHHHHhhc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV-----PFV--IADAT-----TLTQ-------AGYVGEDVESIL---YKLLAQAE 383 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~-----~fv--~id~s-----~l~~-------sgyvG~~~~~~l---~~l~~~a~ 383 (678)
...+|+||||||||+|++.|++.+.. .++ .++-. ++.. ..+........+ ......+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999987722 122 22221 1110 001011111111 12223334
Q ss_pred hhHhhhcCcEEEEcCccchhhhhccc--cccCCCch---hHHHHHHHHHHh
Q 005762 384 FNVEAAQQGMVYIDEVDKITKKAESL--NISRDVSG---EGVQQALLKMLE 429 (678)
Q Consensus 384 ~~v~~a~~gILfIDEIDkl~~~~~~~--~~~~d~s~---~~vq~~LL~~LE 429 (678)
+........+|++||+.++....... ..|.-.++ -.+...+-++++
T Consensus 214 ~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~ 264 (380)
T PRK12608 214 RLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFG 264 (380)
T ss_pred HHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHH
Confidence 44444566799999999987642211 11111111 246777777777
No 393
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.58 E-value=0.039 Score=62.47 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
...++|.|+||+|||+++..++... +.+.+.++..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3679999999999999999988765 4566777654
No 394
>PLN02459 probable adenylate kinase
Probab=95.55 E-value=0.012 Score=61.88 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=27.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
.+++|.||||+||||+|+.||+.++.++ +++.++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdl 63 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDL 63 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHH
Confidence 4689999999999999999999997655 455444
No 395
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.54 E-value=0.026 Score=59.54 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..++|.||+|+||||+++++...+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 5799999999999999998876663
No 396
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.52 E-value=0.014 Score=67.62 Aligned_cols=33 Identities=33% Similarity=0.620 Sum_probs=31.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
..|+|+|.+|+||||+++.+|+.++.+|+.+|.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 579999999999999999999999999998875
No 397
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.52 E-value=0.03 Score=70.50 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
..+-++|++|+||||||+++++.+...
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 568999999999999999998877443
No 398
>PTZ00301 uridine kinase; Provisional
Probab=95.52 E-value=0.086 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.-|.+.|+||+||||+|+.|++.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 358899999999999999999776
No 399
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.52 E-value=0.076 Score=50.65 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=19.1
Q ss_pred CcEEEEcCCCcHHHH-HHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTL-LAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~-LAralA~~l 349 (678)
.++++.||+|+|||+ ++..+.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555554
No 400
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.52 E-value=0.012 Score=63.41 Aligned_cols=36 Identities=39% Similarity=0.603 Sum_probs=31.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
..+++.||+|+|||+||..||+.++..++..|...+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 569999999999999999999999998888777543
No 401
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.49 E-value=0.022 Score=56.19 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~ 360 (678)
.+|+.|+||+|||++|..++..++.+++.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887766655543
No 402
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.47 E-value=0.025 Score=63.15 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=27.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
..|+|+|++|||||||++.||+.++..++.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 679999999999999999999999887654
No 403
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.46 E-value=0.27 Score=53.37 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=28.1
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
.+..++|+||+|+||||++..||..+ +..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 35789999999999999999999887 3445445543
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.19 Score=56.08 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
+..++|+||+|+||||++..||..+ +..+..+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 4689999999999999999999777 3345555553
No 405
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.41 E-value=0.043 Score=58.13 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~ 360 (678)
+..++|+||+|+||||++..||..+ +.....+++..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4678999999999999999999777 44555566544
No 406
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.41 E-value=0.017 Score=58.45 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l 349 (678)
+++.|+||+|||++.+.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999884
No 407
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.39 E-value=0.05 Score=58.43 Aligned_cols=25 Identities=48% Similarity=0.772 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|+.|++|+||||++++|.+.+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 408
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.39 E-value=0.029 Score=57.20 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999984
No 409
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.37 E-value=0.21 Score=53.60 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=42.8
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCCC--EEEEec-----------cccccccccccchHHHHHHHHHhhchhHhhhc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVP--FVIADA-----------TTLTQAGYVGEDVESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~~--fv~id~-----------s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~ 390 (678)
+..=||.+||+|+||||..-++-.++|.. ...+.- ..|...--+|.+.. .+...++.+. ...
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~-sF~~aLraAL----ReD 198 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTL-SFANALRAAL----RED 198 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHH-HHHHHHHHHh----hcC
Confidence 34568999999999999988888888642 122222 22222223444422 2222332222 226
Q ss_pred CcEEEEcCccch
Q 005762 391 QGMVYIDEVDKI 402 (678)
Q Consensus 391 ~gILfIDEIDkl 402 (678)
|-||++=|+-.+
T Consensus 199 PDVIlvGEmRD~ 210 (353)
T COG2805 199 PDVILVGEMRDL 210 (353)
T ss_pred CCEEEEeccccH
Confidence 779999998653
No 410
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.35 E-value=0.45 Score=53.37 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=28.5
Q ss_pred CcEEEEcCCCcHHHHHH--HHHHHHhCCCEEEEecccccc
Q 005762 326 SNVLLMGPTGSGKTLLA--KTLARHVNVPFVIADATTLTQ 363 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LA--ralA~~l~~~fv~id~s~l~~ 363 (678)
.-|++.||.|+||+.|+ ++|...-+ .+.+||..+..
T Consensus 18 TFIvV~GPrGSGK~elV~d~~L~~r~~--vL~IDC~~i~~ 55 (431)
T PF10443_consen 18 TFIVVQGPRGSGKRELVMDHVLKDRKN--VLVIDCDQIVK 55 (431)
T ss_pred eEEEEECCCCCCccHHHHHHHHhCCCC--EEEEEChHhhh
Confidence 56899999999999999 66666443 77889886653
No 411
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.30 E-value=0.037 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||+++|+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4678899999999999999999876
No 412
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.29 E-value=0.035 Score=56.42 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
...++|+|+||+|||++|..+|... +.+.+.+++.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678999999999999999988644 5677777775
No 413
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.28 E-value=3.5 Score=46.64 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=29.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s~l 361 (678)
+..++|.|++|+||||+|..+|..+ +.....++|..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 5789999999999999998888764 456666776643
No 414
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.054 Score=63.82 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=31.0
Q ss_pred hchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 382 a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
..+.+..+++|||||||+..|... .|+.+|+.|..+..
T Consensus 217 ~pGaVHkAngGVLiIdei~lL~~~--------------~~w~~LKa~~~k~~ 254 (647)
T COG1067 217 KPGAVHKANGGVLIIDEIGLLAQP--------------LQWKLLKALLDKEQ 254 (647)
T ss_pred cCcccccccCcEEEEEhhhhhCcH--------------HHHHHHHHHHhccc
Confidence 456788899999999999999876 78888888874433
No 415
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.27 E-value=0.021 Score=55.79 Aligned_cols=35 Identities=31% Similarity=0.559 Sum_probs=28.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~ 360 (678)
..++|.|+||+||||+|+.|+..+ +..+..+|...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 579999999999999999999988 33455566543
No 416
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.25 E-value=0.015 Score=56.78 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCC---CEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNV---PFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~---~fv~id~s 359 (678)
+..++|.|++|+||||+|+.|++.+.. ..+.++..
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d 44 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence 468999999999999999999998852 24445543
No 417
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.23 E-value=0.067 Score=63.52 Aligned_cols=85 Identities=22% Similarity=0.318 Sum_probs=49.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccccc--------ccccccchHHHHHHHHHhhchhHhhhcCcEEEEc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYID 397 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfID 397 (678)
..+.+.||+|+|||++|+.||+.++.+|+ |...+.. .+.--.+ +..+.+++......+. ..-||+|
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~ 516 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGYHYL--DSGALYRLTALAALRAGVALDD-EAAIAALARGLPVRFE---GDRIWLG 516 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCCeEe--cHHHhhhHHHHHHHHcCcCCCC-HHHHHHHHhcCCeeec---CCeEEEC
Confidence 46899999999999999999999999884 4433221 1111111 3334444433322221 1238888
Q ss_pred CccchhhhhccccccCCCch
Q 005762 398 EVDKITKKAESLNISRDVSG 417 (678)
Q Consensus 398 EIDkl~~~~~~~~~~~d~s~ 417 (678)
.-| +.....+..++..+|.
T Consensus 517 ~~~-~~~~i~~~~v~~~~s~ 535 (661)
T PRK11860 517 GED-VTDAIRTEAAGMGASR 535 (661)
T ss_pred CeE-chhhhCcHHHHHHHHH
Confidence 754 5555455445444444
No 418
>PRK13808 adenylate kinase; Provisional
Probab=95.23 E-value=0.016 Score=63.15 Aligned_cols=33 Identities=24% Similarity=0.532 Sum_probs=27.3
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
.|||+||||+|||++++.|++.++.+++ +..++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdl 34 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL--STGDM 34 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--cccHH
Confidence 4899999999999999999999987554 44443
No 419
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.21 E-value=0.0072 Score=63.21 Aligned_cols=26 Identities=46% Similarity=0.793 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..++++.|++|+||||+++++...+.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ceEEEEECCCccccchHHHHHhhhcc
Confidence 37999999999999999999998883
No 420
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.20 E-value=0.02 Score=57.88 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=25.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
..+++.|.||+||||+|+.||+.++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 5799999999999999999999987654
No 421
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.19 E-value=0.016 Score=57.78 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=16.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l 349 (678)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999997655555444
No 422
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.15 E-value=0.051 Score=53.51 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=29.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l 361 (678)
+..++|.|+||+|||++|+.|+..+ +...+.++...+
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 3679999999999999999999987 334566666544
No 423
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.15 E-value=0.17 Score=55.29 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.8
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
.+.++.|+|+-|.|||.|.-..-..+-
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCC
Confidence 468999999999999999988887773
No 424
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.13 E-value=0.064 Score=58.49 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
+.++|+.|++|+||||+.++|...+.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 47999999999999999999998884
No 425
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.12 E-value=0.016 Score=56.62 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.5
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
.++|.||+|+||||+++.|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4899999999999999999998753
No 426
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.03 E-value=0.13 Score=53.84 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=71.7
Q ss_pred CcEEEEcCCC-cHHHHHHHHHHHHhCC---------CEEEEecccc--ccccccccchHHHHHHHHHhhchhHhhhcCcE
Q 005762 326 SNVLLMGPTG-SGKTLLAKTLARHVNV---------PFVIADATTL--TQAGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (678)
Q Consensus 326 ~~iLL~GPpG-tGKT~LAralA~~l~~---------~fv~id~s~l--~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gI 393 (678)
...||.|..+ ++|..++..+++.+.. .|+.+....- .....++ -..++++.......-..+..-|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~---IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNIS---IEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCccc---HHHHHHHHHHHhhCcccCCcEE
Confidence 5689999998 9999999999988833 2333322110 0001122 2234444333221111234569
Q ss_pred EEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEe-cCCCcCHHHHHH
Q 005762 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GGAFVDLEKTIS 472 (678)
Q Consensus 394 LfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~-tGaf~~Le~~i~ 472 (678)
++||++|+|... +.++||+.||. |. .+.+||+ |.+...+-.+|+
T Consensus 93 iII~~ae~mt~~--------------AANALLKtLEE-----PP----------------~~t~fILit~~~~~LLpTIr 137 (263)
T PRK06581 93 AIIYSAELMNLN--------------AANSCLKILED-----AP----------------KNSYIFLITSRAASIISTIR 137 (263)
T ss_pred EEEechHHhCHH--------------HHHHHHHhhcC-----CC----------------CCeEEEEEeCChhhCchhHh
Confidence 999999999987 99999999994 11 2334444 556666777888
Q ss_pred hhcccCC
Q 005762 473 ERRQDSS 479 (678)
Q Consensus 473 ~r~~~~~ 479 (678)
.|++.-.
T Consensus 138 SRCq~i~ 144 (263)
T PRK06581 138 SRCFKIN 144 (263)
T ss_pred hceEEEe
Confidence 8886533
No 427
>PRK13975 thymidylate kinase; Provisional
Probab=95.02 E-value=0.032 Score=55.12 Aligned_cols=27 Identities=41% Similarity=0.466 Sum_probs=24.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
.-|+|.|++|+||||+++.||+.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 358999999999999999999999753
No 428
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.02 E-value=0.02 Score=56.67 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=24.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
..++|+|++|+||||++++|+..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 468999999999999999999998764
No 429
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.98 E-value=0.16 Score=52.26 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..++|.||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999987
No 430
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.98 E-value=0.023 Score=55.99 Aligned_cols=32 Identities=38% Similarity=0.647 Sum_probs=26.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
|.|+|.+|+||||+++.+++ ++.+++ |+..+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~~ 33 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKIA 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHHH
Confidence 78999999999999999999 776664 444443
No 431
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.98 E-value=0.071 Score=55.00 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCcHHHHHHH-HHHHHh--CCCEEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAK-TLARHV--NVPFVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAr-alA~~l--~~~fv~id~ 358 (678)
...++|.|+||||||++|. .+++.+ +.+.+.++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4789999999999999974 455554 455665654
No 432
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.96 E-value=0.23 Score=50.57 Aligned_cols=36 Identities=36% Similarity=0.340 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---------CCCEEEEeccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---------NVPFVIADATT 360 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---------~~~fv~id~s~ 360 (678)
...+.|+||||+|||++|..++... +...+.++..+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 4678999999999999999998543 14566666643
No 433
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.95 E-value=0.3 Score=59.38 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=25.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
.-+++.||+|.|||+++...++..+ ++.-++.
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 5699999999999999999887665 5544433
No 434
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.94 E-value=0.043 Score=55.00 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA 346 (678)
+.++|+||.|+|||++.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 435
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=94.93 E-value=0.099 Score=58.88 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=47.7
Q ss_pred ccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhh----chhHhhhcCcEEEEcC
Q 005762 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA----EFNVEAAQQGMVYIDE 398 (678)
Q Consensus 323 ~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a----~~~v~~a~~gILfIDE 398 (678)
....|++=.||.|||||++=+-|.... +.++....+.+ ++|-.. .+.| ...-+|.+||
T Consensus 206 E~N~NliELgPrGTGKS~vy~eiSp~~----~liSGG~~T~A------------~LFyn~~~~~~GlV--~~~D~VafDE 267 (457)
T PF13337_consen 206 ERNYNLIELGPRGTGKSYVYKEISPYG----ILISGGQVTVA------------KLFYNMSTGQIGLV--GRWDVVAFDE 267 (457)
T ss_pred ccccceEEEcCCCCCceeehhhcCccc----EEEECCCcchH------------HheeeccCCcceee--eeccEEEEEe
Confidence 346899999999999999866665442 33343333211 222111 1111 1123899999
Q ss_pred ccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 399 VDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 399 IDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
|..+.-+. .+..+.|...|+.
T Consensus 268 v~~i~f~d-----------~d~i~imK~YMes 288 (457)
T PF13337_consen 268 VAGIKFKD-----------KDEIQIMKDYMES 288 (457)
T ss_pred ccCcccCC-----------hHHHHHHHHHHhc
Confidence 99885431 2255999999993
No 436
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.93 E-value=0.021 Score=65.41 Aligned_cols=32 Identities=28% Similarity=0.593 Sum_probs=29.5
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
+++|+|++|+||||+++.+|+.++.+|+..|.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 58999999999999999999999999986664
No 437
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.92 E-value=0.026 Score=53.70 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
..++|.|+.|+|||++++.+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 579999999999999999999999753
No 438
>PRK13764 ATPase; Provisional
Probab=94.91 E-value=0.043 Score=64.11 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=23.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
.++|++||||+||||++++++..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999998884
No 439
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.91 E-value=0.12 Score=51.27 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4578899999999999999999876
No 440
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.88 E-value=0.065 Score=64.46 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccc-----cc-ccccccchHHHHHHHHHhhchhHhhhcCcEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL-----TQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVY 395 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l-----~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILf 395 (678)
...++|.|+||||||++++++...+ +..++-+-.+.. .+ .|.....+.+.+.. +.. ..-......+|+
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~-~~~--~~~~~~~~~llI 444 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYA-WAN--GRDLLSDKDVLV 444 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhh-hcc--CcccCCCCcEEE
Confidence 3578999999999999999988766 445554433321 11 12212222221111 111 100112457999
Q ss_pred EcCccchhhh
Q 005762 396 IDEVDKITKK 405 (678)
Q Consensus 396 IDEIDkl~~~ 405 (678)
|||+-.+...
T Consensus 445 vDEasMv~~~ 454 (744)
T TIGR02768 445 IDEAGMVGSR 454 (744)
T ss_pred EECcccCCHH
Confidence 9999988765
No 441
>PTZ00202 tuzin; Provisional
Probab=94.87 E-value=0.12 Score=58.41 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=30.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~ 360 (678)
.-++|+|++|+|||++++.+...++.+.+..|...
T Consensus 287 rivvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 287 RIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 47899999999999999999999988777777763
No 442
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=94.86 E-value=0.11 Score=51.55 Aligned_cols=37 Identities=27% Similarity=0.544 Sum_probs=31.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ 363 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~ 363 (678)
.|+|.|++-+|||+||++|.+.+..||+.+....|..
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 5899999999999999999999999999988876654
No 443
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.86 E-value=0.027 Score=60.23 Aligned_cols=34 Identities=35% Similarity=0.664 Sum_probs=30.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
+++.||||+|||+||..||+.++..++.+|...+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 7899999999999999999999998888887654
No 444
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.84 E-value=0.033 Score=55.42 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=25.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhC-CCEEEEecccc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVN-VPFVIADATTL 361 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~-~~fv~id~s~l 361 (678)
+.|.||+|+||||++++|++.+. .....+++.++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 68999999999999999999983 23444444443
No 445
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.84 E-value=0.12 Score=50.12 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999876
No 446
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.84 E-value=0.052 Score=63.32 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=29.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCC----CEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~----~fv~id~s~l 361 (678)
+..|+|+|.+|+||||+|+.||+.++. +++.+|...+
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 368999999999999999999999864 4556666543
No 447
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.82 E-value=0.024 Score=53.63 Aligned_cols=26 Identities=38% Similarity=0.703 Sum_probs=22.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
++|.||+|+|||+|++.|++.+...|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 68999999999999999999875443
No 448
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.79 E-value=0.024 Score=56.84 Aligned_cols=30 Identities=47% Similarity=0.489 Sum_probs=24.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh-CCCEEEEe
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l-~~~fv~id 357 (678)
|.+.|+||+||||+|+.|++.+ +..++.+|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 6889999999999999999998 44444444
No 449
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=94.78 E-value=0.13 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
+.++|+||...|||++.|.++-..
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHh
Confidence 569999999999999999998654
No 450
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.78 E-value=0.049 Score=54.63 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..++|+||.|+|||++.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4799999999999999999994
No 451
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.76 E-value=0.052 Score=58.40 Aligned_cols=25 Identities=40% Similarity=0.720 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++++.||+|+||||+++++...+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4799999999999999999999887
No 452
>PLN02840 tRNA dimethylallyltransferase
Probab=94.76 E-value=0.03 Score=62.76 Aligned_cols=36 Identities=36% Similarity=0.609 Sum_probs=31.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
..++|.||+|+|||+||..||+.++.+++.+|...+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 469999999999999999999999998888877543
No 453
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.74 E-value=0.095 Score=59.39 Aligned_cols=34 Identities=38% Similarity=0.571 Sum_probs=29.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCC-EEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP-FVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~-fv~id~ 358 (678)
+..+++.|+||+|||++|..||..++.. ++..|.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~ 289 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDA 289 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhH
Confidence 5789999999999999999999999876 445554
No 454
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.74 E-value=0.084 Score=52.05 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=26.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~id~s 359 (678)
+|++|++|+|||++|..++...+.+.+.+...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 68999999999999999998876677666544
No 455
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.71 E-value=0.036 Score=54.92 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=28.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhC---CCEEEEeccccc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLT 362 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~l~ 362 (678)
|.+.|+||+||||+|+.|++.+. .+...++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 78999999999999999999983 455666665554
No 456
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.70 E-value=0.11 Score=59.97 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=22.4
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
....++|+||+|+||||++..||..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999888654
No 457
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.69 E-value=0.24 Score=52.84 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=67.0
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
-+..++.+.+.+.+.|.....-.|..++.....++ +..+...+-|+|.+++|||++
T Consensus 154 Gtle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~------------------------l~~~~~~~hl~G~Ss~GKTt~ 209 (286)
T PF06048_consen 154 GTLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSL------------------------LGVEGFGFHLYGQSSSGKTTA 209 (286)
T ss_pred cCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH------------------------hCCCceEEEEEeCCCCCHHHH
Confidence 35677777777777887777766666665443332 112346788999999999999
Q ss_pred HHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhh
Q 005762 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 342 AralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
+++.+...+.|- .+..+ |.+. ...+...... .....|+|||+....+.
T Consensus 210 ~~~a~Sv~G~p~------~l~~s-w~~T--~n~le~~a~~-------~nd~~l~lDE~~~~~~~ 257 (286)
T PF06048_consen 210 LQLAASVWGNPD------GLIRS-WNST--DNGLERTAAA-------HNDLPLVLDELSQADPK 257 (286)
T ss_pred HHHhhhhCcCch------hhhhc-chhh--HHHHHHHHHH-------cCCcceEehhccccchh
Confidence 999999998876 22211 2221 1222222222 24579999999876554
No 458
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.69 E-value=0.054 Score=55.32 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
.-++|+||+|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999974
No 459
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.69 E-value=0.13 Score=56.88 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+|+.||+|+||||+++++.+.+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998877
No 460
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.67 E-value=0.029 Score=56.41 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=27.9
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
.+.++|++|+|||++++.+++.++.+++ |+.++
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~ 35 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIY 35 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHH
Confidence 4899999999999999999998888776 44443
No 461
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.65 E-value=0.096 Score=56.88 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccccc---ccccchHH-------HHHHHHHhhchhHhhhcC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGEDVES-------ILYKLLAQAEFNVEAAQQ 391 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sg---yvG~~~~~-------~l~~l~~~a~~~v~~a~~ 391 (678)
...++++||||||||+||-.++... +.+.+.+|+....... -.|.+... ...+.+......+.....
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~ 134 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAV 134 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCC
Confidence 4688999999999999987766444 5677777764322110 01111000 011112222222333456
Q ss_pred cEEEEcCccchhhh
Q 005762 392 GMVYIDEVDKITKK 405 (678)
Q Consensus 392 gILfIDEIDkl~~~ 405 (678)
.+|+||-|..+.+.
T Consensus 135 ~lIVIDSv~al~~~ 148 (321)
T TIGR02012 135 DIIVVDSVAALVPK 148 (321)
T ss_pred cEEEEcchhhhccc
Confidence 79999999988764
No 462
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.64 E-value=0.097 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|+||+|+||||+.+.|+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999999543
No 463
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.63 E-value=0.097 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|+||.|+|||++.+.++...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999987443
No 464
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.62 E-value=0.022 Score=55.50 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=23.0
Q ss_pred EcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 331 MGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 331 ~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.|++|+||||++++|+..++..++.-|
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 499999999999999999987665443
No 465
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.62 E-value=0.16 Score=48.59 Aligned_cols=26 Identities=38% Similarity=0.624 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.|++|+|||++.++|+..+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999998874
No 466
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.60 E-value=0.022 Score=55.50 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.5
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
-++|.||+|+||||+++.|++....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 5899999999999999999997644
No 467
>PRK08356 hypothetical protein; Provisional
Probab=94.60 E-value=0.03 Score=55.88 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=25.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~ 360 (678)
..++|+||||+||||+|+.|++ .+.+ .+++++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCc--EEeCCC
Confidence 4589999999999999999965 5555 455654
No 468
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=94.58 E-value=0.19 Score=58.57 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=14.3
Q ss_pred CcEEEEcCCCcHHHHH
Q 005762 326 SNVLLMGPTGSGKTLL 341 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~L 341 (678)
..+++.|++|+||||=
T Consensus 67 qvlIviGeTGsGKSTQ 82 (674)
T KOG0922|consen 67 QVLIVIGETGSGKSTQ 82 (674)
T ss_pred CEEEEEcCCCCCcccc
Confidence 6799999999999973
No 469
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.57 E-value=0.11 Score=58.94 Aligned_cols=70 Identities=26% Similarity=0.401 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEE-EEeccc--------ccc---ccccccchHHHHHHHHHhhchhHhhhcCc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV-IADATT--------LTQ---AGYVGEDVESILYKLLAQAEFNVEAAQQG 392 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv-~id~s~--------l~~---sgyvG~~~~~~l~~l~~~a~~~v~~a~~g 392 (678)
..-+|++||+|+||||+..++-+.++.+.. .+...| +.+ +.-.|-+....++.++++ +|-
T Consensus 258 ~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRq--------DPD 329 (500)
T COG2804 258 QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQ--------DPD 329 (500)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhcc--------CCC
Confidence 356899999999999999999988865433 222221 111 112455556666666655 556
Q ss_pred EEEEcCccch
Q 005762 393 MVYIDEVDKI 402 (678)
Q Consensus 393 ILfIDEIDkl 402 (678)
||.|.||--.
T Consensus 330 vImVGEIRD~ 339 (500)
T COG2804 330 VIMVGEIRDL 339 (500)
T ss_pred eEEEeccCCH
Confidence 9999999853
No 470
>PRK12338 hypothetical protein; Provisional
Probab=94.54 E-value=0.032 Score=60.35 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
+..+++.|+||+||||+|+.||+.++...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 467999999999999999999999987653
No 471
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.53 E-value=0.03 Score=55.88 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...++|.||+|+|||+|++.|++.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36799999999999999999999875
No 472
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.024 Score=57.58 Aligned_cols=22 Identities=50% Similarity=0.780 Sum_probs=21.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l 349 (678)
++|+|+||+|||++|+-||++|
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 8999999999999999999999
No 473
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=94.49 E-value=0.55 Score=50.29 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=25.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.-++|+|+.|+|||++.+.|...++...
T Consensus 77 ~~~~l~G~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 77 KLFFLYGNGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhChhh
Confidence 5689999999999999999999997644
No 474
>PRK14700 recombination factor protein RarA; Provisional
Probab=94.45 E-value=0.13 Score=55.11 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=52.3
Q ss_pred CCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005762 517 LIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESI 596 (678)
Q Consensus 517 ~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~i 596 (678)
++|.|++|. .++.|.+|+.+++.+|+++. +.. ... .....+.+++++++.|++.+ +..+|..-+++|.+
T Consensus 23 vn~ALlSR~-~v~~l~~L~~~di~~il~ra---l~~-~~~---~~~~~~~i~~~al~~ia~~a---~GDaR~aLN~LE~a 91 (300)
T PRK14700 23 LNDALVSRL-FILRLKRLSLVATQKLIEKA---LSQ-DEV---LAKHKFKIDDGLYNAMHNYN---EGDCRKILNLLERM 91 (300)
T ss_pred ecHhhhhhh-heeeecCCCHHHHHHHHHHH---HHh-hhc---cCCcCCCcCHHHHHHHHHhc---CCHHHHHHHHHHHH
Confidence 455555665 36899999999999999973 332 111 12345789999999999986 77799988988886
Q ss_pred H
Q 005762 597 L 597 (678)
Q Consensus 597 l 597 (678)
+
T Consensus 92 ~ 92 (300)
T PRK14700 92 F 92 (300)
T ss_pred H
Confidence 5
No 475
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.44 E-value=0.12 Score=54.26 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
+.+.++++|+||||||++|-.++... +.+.+.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 35789999999999999998876533 445544443
No 476
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.43 E-value=0.03 Score=55.79 Aligned_cols=23 Identities=57% Similarity=0.826 Sum_probs=21.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhC
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~ 350 (678)
|.+.||+|+||||+|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999996
No 477
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=1.4 Score=53.12 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...++|+||+|+||||++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4679999999999999999998655
No 478
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.41 E-value=0.19 Score=54.76 Aligned_cols=81 Identities=22% Similarity=0.268 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccccc---ccccchHHH-------HHHHHHhhchhHhhhcC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGEDVESI-------LYKLLAQAEFNVEAAQQ 391 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sg---yvG~~~~~~-------l~~l~~~a~~~v~~a~~ 391 (678)
...++++||||+|||+||-.++... +...+.+|+..-.... -.|.+.... ..+.+......+.....
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~ 134 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAV 134 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCC
Confidence 4678999999999999998877444 5677777764311110 011111100 01112222222333456
Q ss_pred cEEEEcCccchhhh
Q 005762 392 GMVYIDEVDKITKK 405 (678)
Q Consensus 392 gILfIDEIDkl~~~ 405 (678)
.+|+||-|-.+.+.
T Consensus 135 ~lIVIDSvaal~~~ 148 (325)
T cd00983 135 DLIVVDSVAALVPK 148 (325)
T ss_pred CEEEEcchHhhccc
Confidence 79999999988753
No 479
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.41 E-value=0.17 Score=53.17 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..-++|.||+||||||+.|.|-+..
T Consensus 27 gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 3558999999999999999999887
No 480
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.40 E-value=0.15 Score=45.98 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHH
Q 005762 328 VLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~ 348 (678)
|+|.|+||+|||+|..+|.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 799999999999999999963
No 481
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.40 E-value=0.04 Score=59.31 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=33.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
.-++|+||++||||.||-.||+.++.+++.+|...+
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 569999999999999999999999999999998754
No 482
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.38 E-value=0.038 Score=56.61 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=26.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
..+.|.||+|+||||+++.||+.++.+++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 358999999999999999999999887663
No 483
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.37 E-value=0.16 Score=51.72 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=19.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+++.||.|||||+||-+.|-.+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999999888544
No 484
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=94.37 E-value=0.02 Score=55.24 Aligned_cols=26 Identities=38% Similarity=0.632 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 334 TGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 334 pGtGKT~LAralA~~l~~~fv~id~s 359 (678)
||+||||+++.||+.++.+|+.+|..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~ 26 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDE 26 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHH
Confidence 79999999999999999999877663
No 485
>PRK00023 cmk cytidylate kinase; Provisional
Probab=94.33 E-value=0.032 Score=57.43 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=28.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
..|.+.|++|+|||++|+.||+.++.+++..+
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~~ 36 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDTG 36 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 57999999999999999999999998775433
No 486
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.30 E-value=0.44 Score=55.42 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
....||+||||||||+|++.||+..
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i 440 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAI 440 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999855
No 487
>PRK06761 hypothetical protein; Provisional
Probab=94.28 E-value=0.041 Score=58.65 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=27.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
.-++|.|+||+||||+++.+++.+....+.++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 458999999999999999999999765544443
No 488
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.28 E-value=0.14 Score=51.69 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
...++++|+||+|||++|..+|..+ +.+.+.++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3678999999999999999998765 4566667653
No 489
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.26 E-value=0.11 Score=52.69 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s 359 (678)
..+.+|+.||||||||+++..++... +.+.+.++..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 35889999999999999998766332 6677766654
No 490
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.24 E-value=0.49 Score=51.53 Aligned_cols=34 Identities=32% Similarity=0.643 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCcHHHHHHH-HHHH--HhCCCEEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAK-TLAR--HVNVPFVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAr-alA~--~l~~~fv~id~ 358 (678)
...+++.||-|+|||.+.- .++. ..+..|+.+-.
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~L 85 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRL 85 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEE
Confidence 3679999999999998753 3333 55666654443
No 491
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.23 E-value=0.17 Score=59.29 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
....+|.|+||||||+++..|...+
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999887776554
No 492
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.21 E-value=0.035 Score=55.45 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s 359 (678)
+.-++|.||+|+|||+|++.|.+....-++.++++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~T 38 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCT 38 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCcc
Confidence 35699999999999999999988763223444444
No 493
>PRK06851 hypothetical protein; Provisional
Probab=94.20 E-value=0.37 Score=53.31 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
.+.++|.|+||||||+|++.+++.+ |......-|+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4679999999999999999999887 5555555554
No 494
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.19 E-value=0.054 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l 349 (678)
|+|.|++|+||||+++.|++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 495
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.18 E-value=0.13 Score=51.94 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---C------CCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---N------VPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~------~~fv~id~s 359 (678)
...+.|+||||+|||++|..+|... + ...+.++..
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 4679999999999999999988654 2 455666664
No 496
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.17 E-value=0.095 Score=53.74 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
+..+.|.||+|+|||||++.|++.+.
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35789999999999999999999884
No 497
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.14 E-value=0.043 Score=54.96 Aligned_cols=39 Identities=31% Similarity=0.494 Sum_probs=30.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh-CCCEEEEecccccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV-NVPFVIADATTLTQ 363 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l-~~~fv~id~s~l~~ 363 (678)
|.-++|.|+||+|||+++..+...+ ...++.+|..++..
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 5678999999999999999999988 77888899887763
No 498
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=94.12 E-value=0.048 Score=54.60 Aligned_cols=30 Identities=37% Similarity=0.527 Sum_probs=25.3
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.|.|+|++|+||||+++.+++ ++.+++..|
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 589999999999999999999 776654444
No 499
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.09 E-value=0.18 Score=53.18 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+-|.|++||||||++|.|.+...
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 47889999999999999999999884
No 500
>PLN02748 tRNA dimethylallyltransferase
Probab=94.07 E-value=0.045 Score=62.22 Aligned_cols=37 Identities=46% Similarity=0.660 Sum_probs=31.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
...|+|.||+|+|||+||..||+.++..++..|...+
T Consensus 22 ~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQV 58 (468)
T PLN02748 22 AKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQV 58 (468)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchhee
Confidence 4579999999999999999999999887777665443
Done!