Query 005762
Match_columns 678
No_of_seqs 439 out of 3659
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 2.3E-43 7.8E-48 379.1 23.0 346 261-631 3-349 (363)
2 1um8_A ATP-dependent CLP prote 100.0 8.4E-39 2.9E-43 344.9 26.5 359 259-631 7-365 (376)
3 1g41_A Heat shock protein HSLU 100.0 7.4E-39 2.5E-43 353.5 25.1 287 261-627 3-429 (444)
4 1ofh_A ATP-dependent HSL prote 100.0 1.1E-27 3.9E-32 248.1 21.5 286 262-627 4-295 (310)
5 1r6b_X CLPA protein; AAA+, N-t 99.9 1.2E-25 4.1E-30 263.4 21.9 272 250-603 431-718 (758)
6 4fcw_A Chaperone protein CLPB; 99.9 6.3E-25 2.1E-29 228.5 21.3 261 264-604 8-282 (311)
7 3pxi_A Negative regulator of g 99.9 8.6E-25 2.9E-29 256.4 18.0 258 249-604 463-728 (758)
8 1qvr_A CLPB protein; coiled co 99.9 3.9E-24 1.3E-28 254.1 17.1 276 249-604 530-823 (854)
9 4b4t_J 26S protease regulatory 99.9 1.9E-22 6.4E-27 219.9 18.8 222 274-603 149-372 (405)
10 4b4t_I 26S protease regulatory 99.9 9.2E-22 3.1E-26 215.5 20.4 220 275-603 184-406 (437)
11 4b4t_M 26S protease regulatory 99.9 2.8E-21 9.7E-26 212.9 21.1 221 275-603 183-405 (434)
12 4b4t_L 26S protease subunit RP 99.9 5.6E-21 1.9E-25 210.8 21.8 221 275-603 183-405 (437)
13 4b4t_H 26S protease regulatory 99.9 2.7E-21 9.1E-26 213.6 18.5 222 274-603 210-433 (467)
14 4b4t_K 26S protease regulatory 99.9 4.1E-21 1.4E-25 211.4 18.5 222 273-603 172-397 (428)
15 3syl_A Protein CBBX; photosynt 99.9 2.4E-20 8.4E-25 193.9 21.7 235 263-605 21-267 (309)
16 3m6a_A ATP-dependent protease 99.8 3.5E-21 1.2E-25 218.2 15.0 258 262-625 70-335 (543)
17 1xwi_A SKD1 protein; VPS4B, AA 99.8 3.1E-19 1.1E-23 189.3 22.0 221 274-604 13-234 (322)
18 3eie_A Vacuolar protein sortin 99.8 1.3E-19 4.5E-24 191.5 18.7 220 275-604 20-239 (322)
19 2qp9_X Vacuolar protein sortin 99.8 4.6E-19 1.6E-23 190.4 19.7 221 274-604 52-272 (355)
20 3vfd_A Spastin; ATPase, microt 99.8 1.9E-18 6.6E-23 187.2 19.3 223 274-605 116-338 (389)
21 3cf0_A Transitional endoplasmi 99.8 2.1E-18 7.1E-23 180.8 18.3 219 275-603 17-239 (301)
22 2bjv_A PSP operon transcriptio 99.8 1.4E-18 4.9E-23 177.6 16.4 220 275-599 8-239 (265)
23 3cf2_A TER ATPase, transitiona 99.8 1.2E-18 4.1E-23 204.5 17.4 218 274-602 205-424 (806)
24 3cf2_A TER ATPase, transitiona 99.8 1.6E-19 5.3E-24 212.0 9.8 222 275-604 479-702 (806)
25 2zan_A Vacuolar protein sortin 99.8 2.7E-18 9.3E-23 189.9 19.0 220 275-604 136-356 (444)
26 1ojl_A Transcriptional regulat 99.8 1.4E-18 4.7E-23 183.0 13.7 222 273-598 2-233 (304)
27 3d8b_A Fidgetin-like protein 1 99.8 1.1E-17 3.8E-22 179.6 19.8 223 274-605 85-307 (357)
28 3b9p_A CG5977-PA, isoform A; A 99.8 1.8E-17 6.1E-22 171.8 19.4 223 275-605 23-245 (297)
29 3h4m_A Proteasome-activating n 99.7 2.6E-17 8.9E-22 169.4 18.1 218 275-603 19-241 (285)
30 1lv7_A FTSH; alpha/beta domain 99.7 5.8E-17 2E-21 164.9 19.8 219 275-603 14-235 (257)
31 3pfi_A Holliday junction ATP-d 99.7 3.5E-17 1.2E-21 172.6 18.7 205 275-601 31-235 (338)
32 2ce7_A Cell division protein F 99.7 3.2E-17 1.1E-21 182.9 19.2 218 275-602 18-238 (476)
33 2qz4_A Paraplegin; AAA+, SPG7, 99.7 6.1E-17 2.1E-21 163.9 17.4 219 275-601 8-230 (262)
34 3dzd_A Transcriptional regulat 99.7 1.4E-17 4.6E-22 180.2 11.1 218 305-598 132-359 (368)
35 3pvs_A Replication-associated 99.7 1.3E-16 4.3E-21 176.9 17.8 214 271-628 25-241 (447)
36 1ny5_A Transcriptional regulat 99.7 1.3E-16 4.5E-21 173.4 16.9 220 304-599 139-369 (387)
37 1g8p_A Magnesium-chelatase 38 99.7 1.9E-16 6.4E-21 167.0 16.1 205 326-603 46-305 (350)
38 1hqc_A RUVB; extended AAA-ATPa 99.7 1E-15 3.6E-20 159.8 21.4 202 275-597 14-215 (324)
39 3hu3_A Transitional endoplasmi 99.7 2.7E-16 9.3E-21 176.1 17.3 221 274-605 205-427 (489)
40 3uk6_A RUVB-like 2; hexameric 99.7 7.1E-16 2.4E-20 164.1 17.9 212 275-603 46-313 (368)
41 3t15_A Ribulose bisphosphate c 99.7 1E-16 3.4E-21 167.8 10.7 158 325-545 36-196 (293)
42 2r44_A Uncharacterized protein 99.7 1.4E-16 4.9E-21 167.9 11.4 231 265-603 19-280 (331)
43 2dhr_A FTSH; AAA+ protein, hex 99.7 1.2E-15 4E-20 171.3 18.7 218 274-601 32-252 (499)
44 2x8a_A Nuclear valosin-contain 99.6 2E-15 6.8E-20 156.7 16.3 223 275-604 12-237 (274)
45 1d2n_A N-ethylmaleimide-sensit 99.6 1.1E-15 3.9E-20 156.8 13.5 212 268-597 28-246 (272)
46 3u61_B DNA polymerase accessor 99.6 2.6E-15 8.7E-20 157.7 15.4 193 271-597 25-220 (324)
47 2r62_A Cell division protease 99.6 4.5E-17 1.6E-21 166.3 1.4 218 275-600 13-233 (268)
48 3f9v_A Minichromosome maintena 99.6 1.5E-16 5E-21 182.2 4.6 259 265-603 287-570 (595)
49 1ixz_A ATP-dependent metallopr 99.6 1.1E-14 3.8E-19 147.8 17.5 219 275-603 18-239 (254)
50 2chg_A Replication factor C sm 99.6 1.4E-14 4.8E-19 140.5 15.8 184 275-598 19-209 (226)
51 1ypw_A Transitional endoplasmi 99.6 8.3E-17 2.8E-21 190.2 -0.4 223 274-605 478-703 (806)
52 2c9o_A RUVB-like 1; hexameric 99.6 1.2E-14 4.2E-19 160.9 16.5 104 273-406 37-142 (456)
53 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 2.8E-14 9.5E-19 160.2 19.0 230 264-603 13-269 (500)
54 1iy2_A ATP-dependent metallopr 99.6 2.3E-14 7.9E-19 147.8 16.1 222 271-603 39-263 (278)
55 3te6_A Regulatory protein SIR3 99.5 1.2E-14 4.2E-19 154.3 11.4 240 273-625 20-309 (318)
56 3n70_A Transport activator; si 99.5 8.4E-15 2.9E-19 137.1 7.7 97 274-429 2-101 (145)
57 1iqp_A RFCS; clamp loader, ext 99.5 7E-14 2.4E-18 145.2 15.5 185 275-597 27-216 (327)
58 1njg_A DNA polymerase III subu 99.5 2E-13 6.8E-18 133.5 17.2 184 275-597 25-232 (250)
59 2chq_A Replication factor C sm 99.5 3.8E-14 1.3E-18 146.7 10.2 185 275-597 19-208 (319)
60 1l8q_A Chromosomal replication 99.5 1.9E-13 6.5E-18 143.7 14.8 172 326-599 38-214 (324)
61 1sxj_D Activator 1 41 kDa subu 99.5 6.7E-14 2.3E-18 147.4 11.2 189 275-599 39-241 (353)
62 2qby_B CDC6 homolog 3, cell di 99.5 3.3E-13 1.1E-17 143.7 16.2 204 273-600 20-252 (384)
63 3k1j_A LON protease, ATP-depen 99.5 2.2E-13 7.4E-18 156.2 15.2 141 385-597 196-352 (604)
64 1qvr_A CLPB protein; coiled co 99.5 4.5E-13 1.6E-17 159.2 18.2 190 270-579 168-368 (854)
65 1jbk_A CLPB protein; beta barr 99.5 5.3E-14 1.8E-18 133.2 8.1 161 274-543 23-194 (195)
66 2v1u_A Cell division control p 99.5 3.2E-13 1.1E-17 143.1 14.1 214 273-602 19-258 (387)
67 1jr3_A DNA polymerase III subu 99.4 7.3E-13 2.5E-17 140.5 15.6 184 275-597 18-225 (373)
68 1sxj_A Activator 1 95 kDa subu 99.4 9.7E-13 3.3E-17 148.0 17.4 205 271-597 38-256 (516)
69 1fnn_A CDC6P, cell division co 99.4 8.7E-13 3E-17 140.3 16.1 211 273-602 17-256 (389)
70 3co5_A Putative two-component 99.4 1.5E-14 5.1E-19 135.3 1.8 96 275-430 6-101 (143)
71 1sxj_B Activator 1 37 kDa subu 99.4 3E-13 1E-17 140.3 11.5 183 275-597 23-213 (323)
72 1in4_A RUVB, holliday junction 99.4 4.8E-12 1.7E-16 134.4 20.7 209 270-602 23-232 (334)
73 3pxg_A Negative regulator of g 99.4 7.7E-14 2.6E-18 155.2 7.0 194 271-600 179-385 (468)
74 1ypw_A Transitional endoplasmi 99.4 1.4E-12 4.7E-17 154.3 16.5 176 275-545 206-383 (806)
75 3bos_A Putative DNA replicatio 99.4 1.7E-12 5.8E-17 128.3 13.8 170 325-602 52-226 (242)
76 1sxj_C Activator 1 40 kDa subu 99.4 1.5E-12 5.2E-17 138.0 14.3 184 271-595 24-214 (340)
77 1r6b_X CLPA protein; AAA+, N-t 99.4 9.2E-13 3.1E-17 154.3 13.6 211 270-599 184-408 (758)
78 2z4s_A Chromosomal replication 99.4 1.5E-12 5E-17 143.9 14.1 174 326-602 131-315 (440)
79 1sxj_E Activator 1 40 kDa subu 99.4 2E-12 6.9E-17 136.7 13.5 65 517-598 177-242 (354)
80 3pxi_A Negative regulator of g 99.4 7.8E-13 2.7E-17 155.1 10.0 173 271-579 179-361 (758)
81 2p65_A Hypothetical protein PF 99.4 9.9E-13 3.4E-17 124.6 8.0 116 274-429 23-149 (187)
82 2qby_A CDC6 homolog 1, cell di 99.3 8.5E-12 2.9E-16 131.9 14.7 212 273-601 20-253 (386)
83 3f8t_A Predicted ATPase involv 99.3 1.8E-12 6.1E-17 143.4 9.6 240 265-603 206-466 (506)
84 1a5t_A Delta prime, HOLB; zinc 99.3 3.2E-11 1.1E-15 128.0 16.3 155 326-591 25-203 (334)
85 2gno_A DNA polymerase III, gam 99.2 1.8E-11 6.1E-16 129.2 10.9 126 326-545 19-150 (305)
86 1w5s_A Origin recognition comp 99.0 1.7E-09 5.8E-14 115.9 11.5 220 273-601 22-274 (412)
87 2qen_A Walker-type ATPase; unk 98.7 2.6E-07 8.7E-12 96.2 18.5 51 275-360 14-64 (350)
88 4akg_A Glutathione S-transfera 98.7 2.4E-08 8.1E-13 129.9 10.7 150 326-546 1268-1430(2695)
89 3ec2_A DNA replication protein 98.6 6.6E-08 2.2E-12 92.6 6.4 68 325-402 38-112 (180)
90 4akg_A Glutathione S-transfera 98.4 2.4E-06 8.3E-11 111.4 17.9 67 326-405 646-712 (2695)
91 2fna_A Conserved hypothetical 98.4 9.7E-07 3.3E-11 91.9 11.7 36 326-361 31-66 (357)
92 2w58_A DNAI, primosome compone 98.3 4E-07 1.4E-11 88.5 4.7 37 326-362 55-94 (202)
93 1jr3_D DNA polymerase III, del 98.3 3.2E-06 1.1E-10 89.3 11.7 167 325-598 18-190 (343)
94 2kjq_A DNAA-related protein; s 98.3 1.4E-06 4.8E-11 82.0 7.7 70 325-429 36-108 (149)
95 3vkg_A Dynein heavy chain, cyt 98.2 2.6E-06 9E-11 111.9 10.2 150 326-546 1305-1468(3245)
96 1u0j_A DNA replication protein 98.1 1.1E-05 3.8E-10 83.5 11.8 77 325-438 104-181 (267)
97 1tue_A Replication protein E1; 98.1 2.4E-06 8.4E-11 85.2 4.8 80 325-437 58-137 (212)
98 2qgz_A Helicase loader, putati 98.0 1.3E-06 4.5E-11 91.8 2.3 38 325-362 152-193 (308)
99 3cmw_A Protein RECA, recombina 98.0 9.2E-06 3.1E-10 102.1 9.9 101 325-430 1082-1203(1706)
100 3vkg_A Dynein heavy chain, cyt 97.8 0.00019 6.5E-09 94.8 16.6 67 326-405 605-671 (3245)
101 2vhj_A Ntpase P4, P4; non- hyd 97.6 3.1E-05 1.1E-09 82.3 4.9 73 325-405 123-197 (331)
102 1qzm_A ATP-dependent protease 97.4 0.00047 1.6E-08 60.3 8.4 86 532-625 1-86 (94)
103 3cmu_A Protein RECA, recombina 97.3 0.00036 1.2E-08 88.9 9.0 79 323-405 1425-1520(2050)
104 3trf_A Shikimate kinase, SK; a 97.3 0.00012 4.2E-09 69.6 3.5 34 325-358 5-38 (185)
105 1qhx_A CPT, protein (chloramph 97.3 0.00016 5.3E-09 68.4 3.9 35 326-360 4-38 (178)
106 1ye8_A Protein THEP1, hypothet 97.2 0.00082 2.8E-08 64.9 8.4 27 327-353 2-28 (178)
107 3upu_A ATP-dependent DNA helic 97.2 0.00065 2.2E-08 74.9 8.4 24 326-349 46-69 (459)
108 3vaa_A Shikimate kinase, SK; s 97.1 0.00024 8.3E-09 69.0 3.6 33 325-357 25-57 (199)
109 3kb2_A SPBC2 prophage-derived 97.1 0.0003 1E-08 65.6 4.0 32 327-358 3-34 (173)
110 1zuh_A Shikimate kinase; alpha 97.1 0.00024 8.2E-09 66.7 3.3 32 326-357 8-39 (168)
111 2r2a_A Uncharacterized protein 97.1 0.00053 1.8E-08 67.7 5.7 37 326-362 6-51 (199)
112 1via_A Shikimate kinase; struc 97.0 0.00026 9E-09 67.0 3.1 29 327-355 6-34 (175)
113 2iyv_A Shikimate kinase, SK; t 97.0 0.00033 1.1E-08 66.6 3.6 32 326-357 3-34 (184)
114 3iij_A Coilin-interacting nucl 97.0 0.00037 1.3E-08 66.2 3.4 32 325-356 11-42 (180)
115 1kag_A SKI, shikimate kinase I 96.9 0.0004 1.4E-08 65.2 3.2 30 326-355 5-34 (173)
116 2orw_A Thymidine kinase; TMTK, 96.9 0.00085 2.9E-08 65.1 5.4 24 326-349 4-27 (184)
117 2rhm_A Putative kinase; P-loop 96.9 0.00043 1.5E-08 65.9 3.2 32 325-356 5-36 (193)
118 1y63_A LMAJ004144AAA protein; 96.9 0.00043 1.5E-08 66.5 2.9 33 325-357 10-43 (184)
119 2cdn_A Adenylate kinase; phosp 96.8 0.00062 2.1E-08 65.9 3.7 33 325-357 20-52 (201)
120 1e6c_A Shikimate kinase; phosp 96.8 0.00057 1.9E-08 64.0 3.1 32 326-357 3-34 (173)
121 2c95_A Adenylate kinase 1; tra 96.8 0.0006 2E-08 65.1 3.1 33 325-357 9-41 (196)
122 3lw7_A Adenylate kinase relate 96.8 0.00056 1.9E-08 63.3 2.8 30 326-356 2-31 (179)
123 2ze6_A Isopentenyl transferase 96.8 0.00075 2.6E-08 68.6 4.0 33 327-359 3-35 (253)
124 1tev_A UMP-CMP kinase; ploop, 96.8 0.00057 2E-08 64.9 2.9 30 326-355 4-33 (196)
125 3t61_A Gluconokinase; PSI-biol 96.8 0.00083 2.8E-08 65.0 4.1 33 325-357 18-50 (202)
126 2pt5_A Shikimate kinase, SK; a 96.7 0.00073 2.5E-08 63.0 3.2 31 327-357 2-32 (168)
127 2ehv_A Hypothetical protein PH 96.7 0.0056 1.9E-07 60.4 9.8 35 324-358 29-67 (251)
128 2b8t_A Thymidine kinase; deoxy 96.7 0.0059 2E-07 61.3 10.0 31 326-356 13-46 (223)
129 1aky_A Adenylate kinase; ATP:A 96.7 0.00077 2.6E-08 66.3 3.2 31 326-356 5-35 (220)
130 3dl0_A Adenylate kinase; phosp 96.7 0.00078 2.7E-08 65.8 3.2 31 327-357 2-32 (216)
131 2bwj_A Adenylate kinase 5; pho 96.6 0.00081 2.8E-08 64.3 3.0 31 326-356 13-43 (199)
132 3fb4_A Adenylate kinase; psych 96.6 0.00089 3.1E-08 65.3 3.3 31 327-357 2-32 (216)
133 1zp6_A Hypothetical protein AT 96.6 0.00087 3E-08 63.9 3.0 36 326-361 10-45 (191)
134 3cm0_A Adenylate kinase; ATP-b 96.6 0.0007 2.4E-08 64.3 2.3 30 326-355 5-34 (186)
135 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0036 1.2E-07 63.6 7.6 37 326-362 5-44 (260)
136 1qf9_A UMP/CMP kinase, protein 96.6 0.00084 2.9E-08 63.6 2.7 31 326-356 7-37 (194)
137 1kht_A Adenylate kinase; phosp 96.6 0.00075 2.6E-08 63.9 2.4 25 326-350 4-28 (192)
138 1n0w_A DNA repair protein RAD5 96.6 0.0034 1.2E-07 61.8 7.2 36 325-360 24-68 (243)
139 1ak2_A Adenylate kinase isoenz 96.6 0.001 3.4E-08 66.3 3.2 32 325-356 16-47 (233)
140 2vli_A Antibiotic resistance p 96.5 0.0011 3.7E-08 62.6 3.2 29 326-354 6-34 (183)
141 1ly1_A Polynucleotide kinase; 96.5 0.00061 2.1E-08 63.9 1.3 28 326-353 3-31 (181)
142 3e1s_A Exodeoxyribonuclease V, 96.5 0.0032 1.1E-07 71.6 7.5 33 325-357 204-239 (574)
143 1zd8_A GTP:AMP phosphotransfer 96.5 0.001 3.5E-08 65.8 2.8 31 326-356 8-38 (227)
144 1knq_A Gluconate kinase; ALFA/ 96.5 0.0012 4.3E-08 62.1 3.1 34 326-361 9-42 (175)
145 3be4_A Adenylate kinase; malar 96.5 0.0012 4E-08 65.1 3.0 31 326-356 6-36 (217)
146 1zak_A Adenylate kinase; ATP:A 96.5 0.00089 3E-08 65.9 2.1 30 326-355 6-35 (222)
147 1ukz_A Uridylate kinase; trans 96.5 0.0012 4E-08 63.8 2.9 32 326-357 16-47 (203)
148 2fz4_A DNA repair protein RAD2 96.4 0.007 2.4E-07 60.7 8.6 34 326-359 109-142 (237)
149 1e4v_A Adenylate kinase; trans 96.4 0.0013 4.5E-08 64.4 3.2 30 327-356 2-31 (214)
150 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0053 1.8E-07 59.6 7.4 34 325-358 23-59 (235)
151 2cvh_A DNA repair and recombin 96.4 0.004 1.4E-07 60.3 6.3 36 325-360 20-55 (220)
152 2p5t_B PEZT; postsegregational 96.4 0.0037 1.3E-07 63.2 6.2 38 325-362 32-69 (253)
153 2pbr_A DTMP kinase, thymidylat 96.4 0.0025 8.5E-08 60.4 4.7 31 327-357 2-35 (195)
154 3sr0_A Adenylate kinase; phosp 96.4 0.0019 6.4E-08 64.0 3.9 33 327-361 2-34 (206)
155 3tlx_A Adenylate kinase 2; str 96.4 0.0014 4.9E-08 66.0 3.0 33 325-357 29-61 (243)
156 2pez_A Bifunctional 3'-phospho 96.3 0.0027 9.3E-08 60.1 4.7 36 326-361 6-44 (179)
157 4eun_A Thermoresistant glucoki 96.3 0.0018 6.1E-08 62.8 3.4 35 325-361 29-63 (200)
158 2r8r_A Sensor protein; KDPD, P 96.3 0.024 8.2E-07 57.2 11.7 34 325-358 6-42 (228)
159 1cke_A CK, MSSA, protein (cyti 96.3 0.0018 6.1E-08 63.4 3.1 29 326-354 6-34 (227)
160 2i3b_A HCR-ntpase, human cance 96.3 0.0049 1.7E-07 60.1 6.2 23 327-349 3-25 (189)
161 3crm_A TRNA delta(2)-isopenten 96.3 0.002 6.9E-08 68.3 3.6 36 326-361 6-41 (323)
162 2zr9_A Protein RECA, recombina 96.2 0.0065 2.2E-07 64.9 7.3 81 324-404 60-153 (349)
163 3umf_A Adenylate kinase; rossm 96.2 0.0022 7.5E-08 64.2 3.3 36 325-362 29-64 (217)
164 2jaq_A Deoxyguanosine kinase; 96.2 0.0026 9E-08 60.8 3.6 28 327-354 2-29 (205)
165 2xb4_A Adenylate kinase; ATP-b 96.2 0.0021 7.1E-08 63.7 2.9 30 327-356 2-31 (223)
166 2if2_A Dephospho-COA kinase; a 96.1 0.002 6.8E-08 62.2 2.6 30 327-357 3-32 (204)
167 3ake_A Cytidylate kinase; CMP 96.1 0.0027 9.3E-08 61.0 3.5 31 327-357 4-34 (208)
168 2v54_A DTMP kinase, thymidylat 96.1 0.0032 1.1E-07 60.4 3.8 33 326-358 5-38 (204)
169 2z0h_A DTMP kinase, thymidylat 96.1 0.0043 1.5E-07 59.1 4.6 31 328-358 3-36 (197)
170 3nwj_A ATSK2; P loop, shikimat 96.1 0.0027 9.1E-08 64.8 3.1 32 326-357 49-80 (250)
171 1nks_A Adenylate kinase; therm 96.0 0.0022 7.6E-08 60.6 2.3 33 327-359 3-38 (194)
172 1gvn_B Zeta; postsegregational 96.0 0.0033 1.1E-07 65.2 3.6 37 325-361 33-69 (287)
173 1jjv_A Dephospho-COA kinase; P 96.0 0.0025 8.6E-08 61.7 2.6 30 327-357 4-33 (206)
174 3a8t_A Adenylate isopentenyltr 96.0 0.0022 7.4E-08 68.5 2.2 36 326-361 41-76 (339)
175 1uf9_A TT1252 protein; P-loop, 96.0 0.0028 9.7E-08 60.7 2.9 32 325-357 8-39 (203)
176 4a74_A DNA repair and recombin 96.0 0.011 3.7E-07 57.5 7.1 25 325-349 25-49 (231)
177 3hr8_A Protein RECA; alpha and 96.0 0.016 5.3E-07 62.3 8.8 77 324-404 60-153 (356)
178 3uie_A Adenylyl-sulfate kinase 95.9 0.0057 2E-07 59.2 4.7 37 325-361 25-64 (200)
179 2wwf_A Thymidilate kinase, put 95.9 0.0023 7.8E-08 61.9 1.6 32 325-356 10-41 (212)
180 1svm_A Large T antigen; AAA+ f 95.8 0.0044 1.5E-07 67.0 3.9 31 325-355 169-199 (377)
181 2grj_A Dephospho-COA kinase; T 95.8 0.0038 1.3E-07 61.1 2.9 32 326-357 13-44 (192)
182 2plr_A DTMP kinase, probable t 95.8 0.0069 2.4E-07 58.2 4.7 27 326-352 5-31 (213)
183 1m7g_A Adenylylsulfate kinase; 95.7 0.011 3.8E-07 57.6 6.0 36 326-361 26-65 (211)
184 2z43_A DNA repair and recombin 95.7 0.015 5.2E-07 61.0 7.3 37 324-360 106-151 (324)
185 3r20_A Cytidylate kinase; stru 95.7 0.0062 2.1E-07 61.6 4.1 31 325-355 9-39 (233)
186 2dr3_A UPF0273 protein PH0284; 95.7 0.023 7.9E-07 55.7 8.2 35 325-359 23-60 (247)
187 1nn5_A Similar to deoxythymidy 95.7 0.0029 1E-07 61.1 1.6 29 325-353 9-37 (215)
188 3kl4_A SRP54, signal recogniti 95.7 0.025 8.6E-07 62.2 9.1 36 324-359 96-134 (433)
189 2h92_A Cytidylate kinase; ross 95.6 0.0055 1.9E-07 59.8 3.2 32 326-357 4-35 (219)
190 2bbw_A Adenylate kinase 4, AK4 95.6 0.007 2.4E-07 60.5 4.1 30 325-354 27-56 (246)
191 3jvv_A Twitching mobility prot 95.6 0.017 6E-07 61.8 7.3 24 326-349 124-147 (356)
192 1u94_A RECA protein, recombina 95.6 0.025 8.4E-07 60.6 8.4 78 324-404 62-155 (356)
193 1vht_A Dephospho-COA kinase; s 95.6 0.0049 1.7E-07 60.2 2.7 31 326-357 5-35 (218)
194 1pzn_A RAD51, DNA repair and r 95.6 0.016 5.5E-07 61.7 6.8 37 324-360 130-175 (349)
195 3foz_A TRNA delta(2)-isopenten 95.6 0.0056 1.9E-07 64.6 3.2 36 326-361 11-46 (316)
196 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0074 2.5E-07 64.8 4.0 30 326-355 25-54 (359)
197 1q3t_A Cytidylate kinase; nucl 95.5 0.0063 2.2E-07 60.5 3.3 31 325-355 16-46 (236)
198 1uj2_A Uridine-cytidine kinase 95.5 0.0092 3.1E-07 60.0 4.5 37 326-362 23-67 (252)
199 1xp8_A RECA protein, recombina 95.5 0.017 5.8E-07 62.2 6.8 81 324-404 73-166 (366)
200 3b6e_A Interferon-induced heli 95.5 0.024 8.2E-07 54.3 7.1 23 326-348 49-71 (216)
201 4e22_A Cytidylate kinase; P-lo 95.4 0.0095 3.2E-07 60.2 4.2 30 325-354 27-56 (252)
202 2yvu_A Probable adenylyl-sulfa 95.4 0.012 4.1E-07 56.0 4.7 36 325-360 13-51 (186)
203 3exa_A TRNA delta(2)-isopenten 95.4 0.0068 2.3E-07 64.1 3.0 36 326-361 4-39 (322)
204 2qor_A Guanylate kinase; phosp 95.3 0.0089 3E-07 58.0 3.5 26 325-350 12-37 (204)
205 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.027 9.3E-07 59.5 7.4 68 326-401 172-251 (330)
206 2a5y_B CED-4; apoptosis; HET: 95.3 0.22 7.4E-06 55.9 15.2 44 276-347 131-174 (549)
207 3dm5_A SRP54, signal recogniti 95.3 0.038 1.3E-06 61.0 8.7 37 324-360 99-138 (443)
208 1ltq_A Polynucleotide kinase; 95.3 0.0051 1.7E-07 63.1 1.7 32 326-357 3-35 (301)
209 3d3q_A TRNA delta(2)-isopenten 95.2 0.0082 2.8E-07 64.0 3.1 34 326-359 8-41 (340)
210 2qt1_A Nicotinamide riboside k 95.2 0.0056 1.9E-07 59.3 1.6 34 326-361 22-56 (207)
211 1w36_D RECD, exodeoxyribonucle 95.2 0.028 9.5E-07 64.3 7.6 25 325-349 164-188 (608)
212 1v5w_A DMC1, meiotic recombina 95.1 0.029 9.8E-07 59.5 7.0 37 324-360 121-166 (343)
213 1kgd_A CASK, peripheral plasma 95.1 0.012 4E-07 56.1 3.5 26 325-350 5-30 (180)
214 3io5_A Recombination and repai 95.1 0.024 8.3E-07 60.1 6.1 78 326-404 29-125 (333)
215 3fdi_A Uncharacterized protein 95.1 0.014 4.9E-07 57.1 4.1 30 326-355 7-36 (201)
216 1g5t_A COB(I)alamin adenosyltr 95.0 0.072 2.5E-06 52.5 9.0 34 324-357 27-63 (196)
217 3eph_A TRNA isopentenyltransfe 95.0 0.01 3.5E-07 64.7 3.2 34 326-359 3-36 (409)
218 2j41_A Guanylate kinase; GMP, 95.0 0.011 3.7E-07 56.7 3.0 24 326-349 7-30 (207)
219 2bdt_A BH3686; alpha-beta prot 94.9 0.015 5.1E-07 55.4 3.8 33 327-360 4-36 (189)
220 3tau_A Guanylate kinase, GMP k 94.9 0.012 4.1E-07 57.5 3.1 26 325-350 8-33 (208)
221 3tr0_A Guanylate kinase, GMP k 94.9 0.013 4.6E-07 56.1 3.4 32 326-359 8-39 (205)
222 3asz_A Uridine kinase; cytidin 94.8 0.0099 3.4E-07 57.6 2.2 25 326-350 7-31 (211)
223 2f6r_A COA synthase, bifunctio 94.8 0.011 3.7E-07 60.9 2.6 31 325-356 75-105 (281)
224 2qmh_A HPR kinase/phosphorylas 94.8 0.0086 2.9E-07 59.4 1.7 41 321-362 30-70 (205)
225 1vma_A Cell division protein F 94.8 0.05 1.7E-06 57.0 7.7 34 325-358 104-140 (306)
226 3lda_A DNA repair protein RAD5 94.7 0.052 1.8E-06 59.0 7.8 38 323-360 176-222 (400)
227 3a00_A Guanylate kinase, GMP k 94.7 0.017 5.7E-07 55.3 3.4 25 326-350 2-26 (186)
228 2i1q_A DNA repair and recombin 94.6 0.034 1.1E-06 58.0 5.8 25 324-348 97-121 (322)
229 3cmw_A Protein RECA, recombina 94.6 0.032 1.1E-06 70.5 6.5 82 323-404 730-824 (1706)
230 3zvl_A Bifunctional polynucleo 94.5 0.0091 3.1E-07 65.1 1.3 31 325-355 258-288 (416)
231 2axn_A 6-phosphofructo-2-kinas 94.5 0.042 1.4E-06 61.7 6.5 37 324-360 34-73 (520)
232 3e70_C DPA, signal recognition 94.4 0.046 1.6E-06 57.8 6.3 26 324-349 128-153 (328)
233 1lvg_A Guanylate kinase, GMP k 94.4 0.021 7.3E-07 55.4 3.3 25 326-350 5-29 (198)
234 3c8u_A Fructokinase; YP_612366 94.3 0.018 6E-07 56.1 2.7 26 325-350 22-47 (208)
235 1x6v_B Bifunctional 3'-phospho 94.3 0.028 9.5E-07 64.6 4.5 37 325-361 52-91 (630)
236 1rz3_A Hypothetical protein rb 94.3 0.038 1.3E-06 53.5 4.9 34 326-359 23-59 (201)
237 1xx6_A Thymidine kinase; NESG, 94.2 0.09 3.1E-06 51.3 7.5 31 326-356 9-42 (191)
238 1zu4_A FTSY; GTPase, signal re 94.1 0.091 3.1E-06 55.3 7.7 35 325-359 105-142 (320)
239 1ex7_A Guanylate kinase; subst 94.1 0.032 1.1E-06 54.4 3.9 28 326-353 2-29 (186)
240 3cmu_A Protein RECA, recombina 94.1 0.14 4.6E-06 65.9 10.5 81 324-404 731-824 (2050)
241 1gtv_A TMK, thymidylate kinase 94.0 0.016 5.3E-07 56.0 1.6 24 327-350 2-25 (214)
242 1bif_A 6-phosphofructo-2-kinas 94.0 0.042 1.4E-06 60.6 5.1 27 325-351 39-65 (469)
243 3b9q_A Chloroplast SRP recepto 93.9 0.068 2.3E-06 55.8 6.2 25 325-349 100-124 (302)
244 1znw_A Guanylate kinase, GMP k 93.9 0.032 1.1E-06 54.3 3.4 25 326-350 21-45 (207)
245 1j8m_F SRP54, signal recogniti 93.9 0.13 4.4E-06 53.6 8.3 35 325-359 98-135 (297)
246 2j9r_A Thymidine kinase; TK1, 93.9 0.18 6.1E-06 50.3 8.9 33 326-358 29-64 (214)
247 1sky_E F1-ATPase, F1-ATP synth 93.8 0.036 1.2E-06 61.6 4.1 24 326-349 152-175 (473)
248 3gmt_A Adenylate kinase; ssgci 93.7 0.027 9.3E-07 56.8 2.7 31 326-356 9-39 (230)
249 1tf7_A KAIC; homohexamer, hexa 93.7 0.13 4.6E-06 57.4 8.6 35 325-359 39-77 (525)
250 3hdt_A Putative kinase; struct 93.7 0.037 1.3E-06 55.4 3.6 31 325-355 14-44 (223)
251 1z6g_A Guanylate kinase; struc 93.7 0.037 1.3E-06 54.6 3.5 25 325-349 23-47 (218)
252 3ney_A 55 kDa erythrocyte memb 93.7 0.048 1.7E-06 53.6 4.3 26 325-350 19-44 (197)
253 2og2_A Putative signal recogni 93.6 0.079 2.7E-06 56.8 6.2 26 324-349 156-181 (359)
254 2v3c_C SRP54, signal recogniti 93.5 0.062 2.1E-06 59.0 5.3 35 325-359 99-136 (432)
255 1w4r_A Thymidine kinase; type 93.4 0.097 3.3E-06 51.5 6.0 33 326-358 21-56 (195)
256 1odf_A YGR205W, hypothetical 3 93.4 0.095 3.3E-06 54.4 6.3 25 326-350 32-56 (290)
257 4eaq_A DTMP kinase, thymidylat 93.2 0.043 1.5E-06 54.7 3.3 30 325-354 26-57 (229)
258 2iut_A DNA translocase FTSK; n 93.1 0.39 1.3E-05 54.5 11.2 36 325-360 214-256 (574)
259 1htw_A HI0065; nucleotide-bind 93.1 0.048 1.6E-06 51.5 3.2 24 326-349 34-57 (158)
260 1a7j_A Phosphoribulokinase; tr 93.1 0.036 1.2E-06 57.4 2.5 37 326-362 6-45 (290)
261 2jeo_A Uridine-cytidine kinase 93.1 0.048 1.6E-06 54.5 3.4 27 326-352 26-52 (245)
262 3lnc_A Guanylate kinase, GMP k 93.0 0.034 1.2E-06 54.8 2.2 26 325-350 27-53 (231)
263 3kta_A Chromosome segregation 93.0 0.061 2.1E-06 50.6 3.7 30 321-350 22-51 (182)
264 2eyu_A Twitching motility prot 92.9 0.051 1.7E-06 55.5 3.2 25 325-349 25-49 (261)
265 2j37_W Signal recognition part 92.8 0.18 6.1E-06 56.5 7.8 34 325-358 101-137 (504)
266 1s96_A Guanylate kinase, GMP k 92.8 0.057 2E-06 53.7 3.4 26 325-350 16-41 (219)
267 4gp7_A Metallophosphoesterase; 92.6 0.06 2E-06 50.9 3.1 20 326-345 10-29 (171)
268 1m8p_A Sulfate adenylyltransfe 92.6 0.064 2.2E-06 61.0 4.0 36 326-361 397-436 (573)
269 3vkw_A Replicase large subunit 92.6 0.15 5.3E-06 56.1 6.8 23 325-347 161-183 (446)
270 2yhs_A FTSY, cell division pro 92.6 0.1 3.5E-06 58.4 5.4 25 325-349 293-317 (503)
271 2v9p_A Replication protein E1; 92.5 0.066 2.3E-06 56.2 3.6 25 325-349 126-150 (305)
272 4b3f_X DNA-binding protein smu 92.4 0.17 6E-06 57.9 7.3 34 326-359 206-242 (646)
273 2px0_A Flagellar biosynthesis 92.4 0.11 3.7E-06 54.1 5.0 37 324-360 104-144 (296)
274 1rj9_A FTSY, signal recognitio 92.3 0.073 2.5E-06 55.6 3.5 26 324-349 101-126 (304)
275 1sq5_A Pantothenate kinase; P- 92.2 0.054 1.9E-06 56.4 2.5 25 326-350 81-105 (308)
276 2xxa_A Signal recognition part 92.1 0.31 1.1E-05 53.4 8.5 36 325-360 100-139 (433)
277 3sfz_A APAF-1, apoptotic pepti 92.0 0.28 9.6E-06 59.2 8.7 45 275-348 126-170 (1249)
278 3aez_A Pantothenate kinase; tr 92.0 0.073 2.5E-06 55.8 3.2 26 325-350 90-115 (312)
279 2ffh_A Protein (FFH); SRP54, s 92.0 0.24 8.1E-06 54.3 7.3 36 324-359 97-135 (425)
280 1nlf_A Regulatory protein REPA 92.0 0.081 2.8E-06 53.8 3.4 26 324-349 29-54 (279)
281 3cr8_A Sulfate adenylyltranfer 91.9 0.072 2.5E-06 60.3 3.2 37 325-361 369-409 (552)
282 1cr0_A DNA primase/helicase; R 91.9 0.082 2.8E-06 54.1 3.4 25 325-349 35-59 (296)
283 2zts_A Putative uncharacterize 91.8 0.19 6.6E-06 49.0 5.8 36 324-359 29-68 (251)
284 3tqc_A Pantothenate kinase; bi 91.7 0.14 5E-06 53.9 5.0 26 325-350 92-117 (321)
285 2f1r_A Molybdopterin-guanine d 91.6 0.078 2.7E-06 50.8 2.6 25 326-350 3-27 (171)
286 1g8f_A Sulfate adenylyltransfe 91.6 0.056 1.9E-06 60.7 1.7 26 326-351 396-421 (511)
287 2ewv_A Twitching motility prot 91.5 0.09 3.1E-06 56.4 3.2 24 326-349 137-160 (372)
288 2q6t_A DNAB replication FORK h 91.5 0.24 8.3E-06 54.1 6.8 35 324-358 199-237 (444)
289 1lw7_A Transcriptional regulat 91.4 0.11 3.7E-06 55.2 3.7 26 326-351 171-196 (365)
290 1p5z_B DCK, deoxycytidine kina 91.3 0.044 1.5E-06 55.3 0.6 25 326-350 25-49 (263)
291 2ocp_A DGK, deoxyguanosine kin 91.1 0.1 3.5E-06 51.7 3.0 25 326-350 3-27 (241)
292 1z6t_A APAF-1, apoptotic prote 91.1 0.15 5.2E-06 57.1 4.7 44 275-347 126-169 (591)
293 1c9k_A COBU, adenosylcobinamid 91.1 0.13 4.3E-06 50.0 3.5 32 328-360 2-33 (180)
294 3tif_A Uncharacterized ABC tra 91.0 0.076 2.6E-06 53.2 1.9 26 325-350 31-56 (235)
295 2pcj_A ABC transporter, lipopr 90.9 0.074 2.5E-06 52.9 1.7 26 325-350 30-55 (224)
296 4i1u_A Dephospho-COA kinase; s 90.9 0.1 3.5E-06 51.9 2.8 32 326-358 10-41 (210)
297 3lxx_A GTPase IMAP family memb 90.8 0.43 1.5E-05 47.0 7.2 24 325-348 29-52 (239)
298 4edh_A DTMP kinase, thymidylat 90.8 0.12 4.2E-06 51.0 3.2 25 326-350 7-31 (213)
299 3ice_A Transcription terminati 90.8 0.34 1.2E-05 52.7 6.8 25 325-349 174-198 (422)
300 2gza_A Type IV secretion syste 90.7 0.096 3.3E-06 55.9 2.5 33 325-357 175-209 (361)
301 2onk_A Molybdate/tungstate ABC 90.7 0.096 3.3E-06 52.8 2.3 25 326-350 25-49 (240)
302 2cbz_A Multidrug resistance-as 90.7 0.083 2.8E-06 53.0 1.9 25 325-349 31-55 (237)
303 3b85_A Phosphate starvation-in 90.7 0.091 3.1E-06 51.8 2.1 23 326-348 23-45 (208)
304 3sop_A Neuronal-specific septi 90.6 0.12 4.1E-06 53.0 3.0 24 326-349 3-26 (270)
305 4ag6_A VIRB4 ATPase, type IV s 90.5 0.23 7.8E-06 53.1 5.2 36 324-359 34-72 (392)
306 1xjc_A MOBB protein homolog; s 90.4 0.14 4.9E-06 49.1 3.2 24 326-349 5-28 (169)
307 1hv8_A Putative ATP-dependent 90.4 0.37 1.2E-05 49.5 6.5 22 326-347 45-66 (367)
308 1oix_A RAS-related protein RAB 90.4 0.13 4.4E-06 48.9 2.8 24 326-349 30-53 (191)
309 2ged_A SR-beta, signal recogni 90.3 0.23 7.9E-06 46.5 4.5 25 325-349 48-72 (193)
310 2f9l_A RAB11B, member RAS onco 90.3 0.14 4.7E-06 48.8 3.0 24 326-349 6-29 (199)
311 2xau_A PRE-mRNA-splicing facto 90.3 0.92 3.2E-05 53.3 10.5 22 326-347 110-131 (773)
312 1b0u_A Histidine permease; ABC 90.3 0.095 3.3E-06 53.4 1.9 26 325-350 32-57 (262)
313 1sgw_A Putative ABC transporte 90.3 0.1 3.4E-06 51.8 2.0 26 325-350 35-60 (214)
314 1g6h_A High-affinity branched- 90.3 0.097 3.3E-06 53.1 1.9 26 325-350 33-58 (257)
315 1p9r_A General secretion pathw 90.2 0.15 5E-06 55.8 3.4 25 326-350 168-192 (418)
316 3v9p_A DTMP kinase, thymidylat 90.1 0.12 4.1E-06 51.8 2.4 25 325-349 25-49 (227)
317 1np6_A Molybdopterin-guanine d 90.1 0.16 5.4E-06 48.8 3.1 24 326-349 7-30 (174)
318 1ji0_A ABC transporter; ATP bi 90.0 0.1 3.6E-06 52.3 1.9 26 325-350 32-57 (240)
319 2oap_1 GSPE-2, type II secreti 90.0 0.11 3.9E-06 58.1 2.4 33 326-358 261-295 (511)
320 2dyk_A GTP-binding protein; GT 90.0 0.16 5.4E-06 45.8 3.0 22 327-348 3-24 (161)
321 2ff7_A Alpha-hemolysin translo 90.0 0.1 3.6E-06 52.7 1.9 25 325-349 35-59 (247)
322 1nrj_B SR-beta, signal recogni 90.0 0.17 5.7E-06 48.7 3.3 25 325-349 12-36 (218)
323 2pze_A Cystic fibrosis transme 90.0 0.11 3.6E-06 51.9 1.9 26 325-350 34-59 (229)
324 3tmk_A Thymidylate kinase; pho 90.0 0.23 7.9E-06 49.3 4.4 27 326-352 6-32 (216)
325 1u8z_A RAS-related protein RAL 89.9 0.15 5.3E-06 45.9 2.8 23 326-348 5-27 (168)
326 1mv5_A LMRA, multidrug resista 89.8 0.1 3.4E-06 52.5 1.6 25 325-349 28-52 (243)
327 2olj_A Amino acid ABC transpor 89.8 0.11 3.8E-06 53.2 1.9 26 325-350 50-75 (263)
328 3gfo_A Cobalt import ATP-bindi 89.8 0.11 3.8E-06 53.5 1.9 26 325-350 34-59 (275)
329 2ixe_A Antigen peptide transpo 89.7 0.11 3.8E-06 53.2 1.9 26 325-350 45-70 (271)
330 2d2e_A SUFC protein; ABC-ATPas 89.7 0.16 5.6E-06 51.2 3.1 24 325-348 29-52 (250)
331 1z2a_A RAS-related protein RAB 89.7 0.17 5.9E-06 45.8 3.0 23 326-348 6-28 (168)
332 2qi9_C Vitamin B12 import ATP- 89.7 0.11 3.9E-06 52.6 1.9 26 325-350 26-51 (249)
333 1kao_A RAP2A; GTP-binding prot 89.6 0.16 5.5E-06 45.7 2.7 23 326-348 4-26 (167)
334 3fvq_A Fe(3+) IONS import ATP- 89.6 0.12 4E-06 55.5 2.0 26 325-350 30-55 (359)
335 2ce2_X GTPase HRAS; signaling 89.6 0.17 5.8E-06 45.4 2.8 24 326-349 4-27 (166)
336 2ghi_A Transport protein; mult 89.6 0.12 4E-06 52.7 1.9 25 325-349 46-70 (260)
337 2ihy_A ABC transporter, ATP-bi 89.5 0.12 4E-06 53.3 1.9 26 325-350 47-72 (279)
338 3lv8_A DTMP kinase, thymidylat 89.5 0.17 5.9E-06 51.0 3.0 24 326-349 28-51 (236)
339 2zu0_C Probable ATP-dependent 89.4 0.18 6E-06 51.6 3.1 25 325-349 46-70 (267)
340 2gk6_A Regulator of nonsense t 89.4 0.27 9.1E-06 56.2 4.9 24 326-349 196-219 (624)
341 1vpl_A ABC transporter, ATP-bi 89.3 0.13 4.3E-06 52.5 1.9 26 325-350 41-66 (256)
342 2yz2_A Putative ABC transporte 89.3 0.13 4.3E-06 52.6 1.9 26 325-350 33-58 (266)
343 3d31_A Sulfate/molybdate ABC t 89.3 0.15 5E-06 54.5 2.4 25 326-350 27-51 (348)
344 3tqf_A HPR(Ser) kinase; transf 89.3 0.18 6.2E-06 49.0 2.8 34 321-355 12-45 (181)
345 1ls1_A Signal recognition part 89.2 0.32 1.1E-05 50.4 5.0 36 324-359 97-135 (295)
346 1ek0_A Protein (GTP-binding pr 89.2 0.17 5.7E-06 45.8 2.5 24 326-349 4-27 (170)
347 2nq2_C Hypothetical ABC transp 89.2 0.13 4.5E-06 52.2 1.9 26 325-350 31-56 (253)
348 2lkc_A Translation initiation 89.1 0.24 8.2E-06 45.4 3.5 23 325-347 8-30 (178)
349 1z47_A CYSA, putative ABC-tran 89.0 0.16 5.3E-06 54.5 2.4 26 325-350 41-66 (355)
350 4g1u_C Hemin import ATP-bindin 89.0 0.17 5.7E-06 51.8 2.6 26 325-350 37-62 (266)
351 3rlf_A Maltose/maltodextrin im 89.0 0.14 4.9E-06 55.3 2.1 26 325-350 29-54 (381)
352 2wji_A Ferrous iron transport 88.9 0.2 6.9E-06 46.1 2.8 22 326-347 4-25 (165)
353 1wp9_A ATP-dependent RNA helic 88.9 0.63 2.1E-05 49.2 7.0 33 327-359 25-61 (494)
354 1z0j_A RAB-22, RAS-related pro 88.9 0.21 7.3E-06 45.2 3.0 24 326-349 7-30 (170)
355 2it1_A 362AA long hypothetical 88.8 0.16 5.5E-06 54.5 2.4 26 325-350 29-54 (362)
356 1v43_A Sugar-binding transport 88.8 0.15 5.1E-06 54.9 2.1 26 325-350 37-62 (372)
357 3p32_A Probable GTPase RV1496/ 88.8 0.3 1E-05 51.8 4.4 33 326-358 80-115 (355)
358 2yyz_A Sugar ABC transporter, 88.8 0.17 5.7E-06 54.3 2.4 26 325-350 29-54 (359)
359 2zej_A Dardarin, leucine-rich 88.7 0.17 5.9E-06 47.5 2.3 22 326-347 3-24 (184)
360 2nzj_A GTP-binding protein REM 88.7 0.21 7.2E-06 45.6 2.8 22 326-347 5-26 (175)
361 1g29_1 MALK, maltose transport 88.6 0.17 5.8E-06 54.4 2.4 26 325-350 29-54 (372)
362 4tmk_A Protein (thymidylate ki 88.6 0.22 7.4E-06 49.3 3.0 24 326-349 4-27 (213)
363 3ld9_A DTMP kinase, thymidylat 88.6 0.23 7.9E-06 49.6 3.2 26 326-351 22-47 (223)
364 1c1y_A RAS-related protein RAP 88.5 0.21 7.3E-06 45.1 2.7 23 326-348 4-26 (167)
365 1g16_A RAS-related protein SEC 88.5 0.22 7.6E-06 45.1 2.8 23 326-348 4-26 (170)
366 1yrb_A ATP(GTP)binding protein 88.5 0.38 1.3E-05 47.7 4.8 35 325-359 14-50 (262)
367 2h57_A ADP-ribosylation factor 88.5 0.16 5.5E-06 47.7 1.9 26 324-349 20-45 (190)
368 1wms_A RAB-9, RAB9, RAS-relate 88.5 0.23 7.9E-06 45.5 3.0 23 326-348 8-30 (177)
369 1oxx_K GLCV, glucose, ABC tran 88.5 0.15 5.2E-06 54.4 1.9 25 325-349 31-55 (353)
370 1z08_A RAS-related protein RAB 88.4 0.23 8E-06 45.0 2.9 23 326-348 7-29 (170)
371 1ky3_A GTP-binding protein YPT 88.4 0.24 8.1E-06 45.5 3.0 23 326-348 9-31 (182)
372 2gks_A Bifunctional SAT/APS ki 88.4 0.32 1.1E-05 54.9 4.5 35 326-360 373-410 (546)
373 2p6r_A Afuhel308 helicase; pro 88.3 1.3 4.4E-05 51.0 9.7 20 325-344 40-59 (702)
374 2vp4_A Deoxynucleoside kinase; 88.3 0.23 7.9E-06 49.0 3.0 24 325-348 20-43 (230)
375 3bc1_A RAS-related protein RAB 88.3 0.24 8.2E-06 45.9 3.0 23 326-348 12-34 (195)
376 2pjz_A Hypothetical protein ST 88.3 0.15 5.1E-06 52.2 1.6 25 325-349 30-54 (263)
377 1r2q_A RAS-related protein RAB 88.3 0.25 8.5E-06 44.7 3.0 23 326-348 7-29 (170)
378 2wjg_A FEOB, ferrous iron tran 88.3 0.23 7.9E-06 46.2 2.8 23 326-348 8-30 (188)
379 2npi_A Protein CLP1; CLP1-PCF1 88.2 0.23 7.8E-06 54.9 3.2 24 326-349 139-162 (460)
380 3bh0_A DNAB-like replicative h 88.2 0.39 1.3E-05 50.0 4.8 35 324-358 67-104 (315)
381 3q85_A GTP-binding protein REM 88.1 0.24 8.3E-06 45.0 2.8 20 327-346 4-23 (169)
382 1r8s_A ADP-ribosylation factor 88.1 0.26 8.9E-06 44.6 3.0 22 327-348 2-23 (164)
383 3nh6_A ATP-binding cassette SU 88.1 0.17 5.7E-06 53.1 1.9 26 325-350 80-105 (306)
384 2erx_A GTP-binding protein DI- 88.1 0.24 8.3E-06 44.8 2.8 22 326-347 4-25 (172)
385 3gd7_A Fusion complex of cysti 87.9 0.18 6E-06 54.7 2.0 25 325-349 47-71 (390)
386 1m2o_B GTP-binding protein SAR 87.9 0.26 8.9E-06 46.6 3.0 23 325-347 23-45 (190)
387 1f2t_A RAD50 ABC-ATPase; DNA d 87.8 0.31 1E-05 45.2 3.3 28 322-349 20-47 (149)
388 3q72_A GTP-binding protein RAD 87.8 0.26 9.1E-06 44.6 2.8 21 326-346 3-23 (166)
389 1upt_A ARL1, ADP-ribosylation 87.8 0.28 9.7E-06 44.5 3.0 23 325-347 7-29 (171)
390 1z0f_A RAB14, member RAS oncog 87.7 0.28 9.5E-06 44.8 3.0 24 326-349 16-39 (179)
391 3con_A GTPase NRAS; structural 87.7 0.28 9.4E-06 45.8 3.0 25 325-349 21-45 (190)
392 2a9k_A RAS-related protein RAL 87.7 0.28 9.6E-06 45.2 3.0 23 326-348 19-41 (187)
393 2fn4_A P23, RAS-related protei 87.6 0.27 9.2E-06 45.0 2.8 23 326-348 10-32 (181)
394 2y8e_A RAB-protein 6, GH09086P 87.6 0.27 9.3E-06 44.9 2.8 23 326-348 15-37 (179)
395 4dsu_A GTPase KRAS, isoform 2B 87.5 0.29 9.8E-06 45.3 3.0 24 326-349 5-28 (189)
396 3t1o_A Gliding protein MGLA; G 87.5 0.29 9.8E-06 45.6 3.0 24 326-349 15-38 (198)
397 1xti_A Probable ATP-dependent 87.5 0.97 3.3E-05 47.0 7.4 21 326-346 46-66 (391)
398 2wsm_A Hydrogenase expression/ 87.4 0.28 9.7E-06 47.2 3.0 25 326-350 31-55 (221)
399 2wjy_A Regulator of nonsense t 87.4 0.42 1.4E-05 56.4 4.9 24 326-349 372-395 (800)
400 2bbs_A Cystic fibrosis transme 87.4 0.19 6.5E-06 52.1 1.8 25 325-349 64-88 (290)
401 3tw8_B RAS-related protein RAB 87.4 0.26 9E-06 45.1 2.6 22 326-347 10-31 (181)
402 1gm5_A RECG; helicase, replica 87.3 1 3.5E-05 53.0 8.2 34 326-359 390-426 (780)
403 2hxs_A RAB-26, RAS-related pro 87.3 0.26 9E-06 45.2 2.5 22 326-347 7-28 (178)
404 2h17_A ADP-ribosylation factor 87.3 0.24 8.3E-06 46.1 2.3 24 325-348 21-44 (181)
405 4f4c_A Multidrug resistance pr 87.3 1.4 4.6E-05 55.0 9.6 28 324-351 443-470 (1321)
406 2oil_A CATX-8, RAS-related pro 87.3 0.3 1E-05 45.8 3.0 23 326-348 26-48 (193)
407 1m7b_A RND3/RHOE small GTP-bin 87.2 0.3 1E-05 45.6 2.8 23 326-348 8-30 (184)
408 3l9o_A ATP-dependent RNA helic 87.2 1.8 6E-05 53.0 10.3 21 326-346 200-220 (1108)
409 3hjn_A DTMP kinase, thymidylat 87.1 0.5 1.7E-05 45.9 4.5 29 328-356 3-34 (197)
410 3clv_A RAB5 protein, putative; 87.1 0.31 1.1E-05 45.3 3.0 23 326-348 8-30 (208)
411 2bme_A RAB4A, RAS-related prot 87.1 0.3 1E-05 45.2 2.8 23 326-348 11-33 (186)
412 3kkq_A RAS-related protein M-R 87.0 0.32 1.1E-05 45.0 3.0 24 325-348 18-41 (183)
413 2r6a_A DNAB helicase, replicat 87.0 0.51 1.7E-05 51.7 5.0 35 324-358 202-240 (454)
414 2obl_A ESCN; ATPase, hydrolase 87.0 0.44 1.5E-05 50.7 4.4 27 326-352 72-98 (347)
415 3thx_B DNA mismatch repair pro 87.0 0.65 2.2E-05 55.6 6.3 24 325-348 673-696 (918)
416 2efe_B Small GTP-binding prote 87.0 0.32 1.1E-05 44.7 2.9 23 326-348 13-35 (181)
417 2g6b_A RAS-related protein RAB 86.9 0.33 1.1E-05 44.6 3.0 23 326-348 11-33 (180)
418 2qu8_A Putative nucleolar GTP- 86.8 0.34 1.2E-05 47.2 3.1 24 324-347 28-51 (228)
419 1mh1_A RAC1; GTP-binding, GTPa 86.8 0.34 1.2E-05 44.7 3.0 23 326-348 6-28 (186)
420 1svi_A GTP-binding protein YSX 86.7 0.33 1.1E-05 45.4 2.9 23 325-347 23-45 (195)
421 2gj8_A MNME, tRNA modification 86.7 0.3 1E-05 45.5 2.6 23 326-348 5-27 (172)
422 2cxx_A Probable GTP-binding pr 86.7 0.3 1E-05 45.3 2.6 21 327-347 3-23 (190)
423 2dpy_A FLII, flagellum-specifi 86.6 0.46 1.6E-05 52.2 4.4 27 326-352 158-184 (438)
424 1e9r_A Conjugal transfer prote 86.6 0.48 1.6E-05 51.2 4.5 35 325-359 53-90 (437)
425 3bwd_D RAC-like GTP-binding pr 86.6 0.39 1.3E-05 44.1 3.3 24 325-348 8-31 (182)
426 2www_A Methylmalonic aciduria 86.5 0.99 3.4E-05 47.7 6.8 24 326-349 75-98 (349)
427 3thx_A DNA mismatch repair pro 86.5 0.63 2.2E-05 55.9 5.8 24 325-348 662-685 (934)
428 2hf9_A Probable hydrogenase ni 86.5 0.35 1.2E-05 46.7 3.1 24 326-349 39-62 (226)
429 3tkl_A RAS-related protein RAB 86.5 0.35 1.2E-05 45.1 3.0 24 326-349 17-40 (196)
430 2qm8_A GTPase/ATPase; G protei 86.4 0.35 1.2E-05 51.1 3.1 25 325-349 55-79 (337)
431 2bov_A RAla, RAS-related prote 86.3 0.36 1.2E-05 45.4 3.0 24 325-348 14-37 (206)
432 2gf9_A RAS-related protein RAB 86.3 0.37 1.3E-05 45.1 3.0 23 326-348 23-45 (189)
433 1f6b_A SAR1; gtpases, N-termin 86.2 0.31 1.1E-05 46.5 2.5 23 325-347 25-47 (198)
434 1ewq_A DNA mismatch repair pro 86.2 0.47 1.6E-05 55.7 4.4 25 325-349 576-600 (765)
435 1vt4_I APAF-1 related killer D 86.2 0.46 1.6E-05 57.8 4.3 45 273-347 128-172 (1221)
436 3pqc_A Probable GTP-binding pr 86.2 0.35 1.2E-05 44.9 2.7 24 325-348 23-46 (195)
437 2atv_A RERG, RAS-like estrogen 86.2 0.37 1.3E-05 45.4 3.0 24 325-348 28-51 (196)
438 1x3s_A RAS-related protein RAB 86.1 0.38 1.3E-05 44.8 3.0 24 325-348 15-38 (195)
439 4hlc_A DTMP kinase, thymidylat 86.1 0.39 1.3E-05 47.1 3.1 23 328-350 5-27 (205)
440 2iwr_A Centaurin gamma 1; ANK 86.1 0.32 1.1E-05 44.8 2.4 23 326-348 8-30 (178)
441 3t5g_A GTP-binding protein RHE 86.0 0.37 1.3E-05 44.4 2.8 22 326-347 7-28 (181)
442 1tf7_A KAIC; homohexamer, hexa 86.0 0.38 1.3E-05 53.7 3.4 25 325-349 281-305 (525)
443 1vg8_A RAS-related protein RAB 85.9 0.39 1.3E-05 45.3 3.0 24 326-349 9-32 (207)
444 1zd9_A ADP-ribosylation factor 85.8 0.4 1.4E-05 45.0 3.0 24 325-348 22-45 (188)
445 3dz8_A RAS-related protein RAB 85.8 0.38 1.3E-05 45.1 2.8 24 326-349 24-47 (191)
446 1pui_A ENGB, probable GTP-bind 85.8 0.21 7.1E-06 47.6 1.0 24 325-348 26-49 (210)
447 1wb9_A DNA mismatch repair pro 85.8 0.47 1.6E-05 56.0 4.2 25 325-349 607-631 (800)
448 1z06_A RAS-related protein RAB 85.8 0.4 1.4E-05 44.8 3.0 23 326-348 21-43 (189)
449 2fg5_A RAB-22B, RAS-related pr 85.8 0.38 1.3E-05 45.3 2.8 23 326-348 24-46 (192)
450 3c5c_A RAS-like protein 12; GD 85.7 0.4 1.4E-05 45.1 3.0 23 326-348 22-44 (187)
451 2a5j_A RAS-related protein RAB 85.7 0.4 1.4E-05 45.0 3.0 23 326-348 22-44 (191)
452 3ch4_B Pmkase, phosphomevalona 85.7 0.68 2.3E-05 45.7 4.6 38 323-360 9-47 (202)
453 2p5s_A RAS and EF-hand domain 85.7 0.41 1.4E-05 45.4 3.0 24 325-348 28-51 (199)
454 3ihw_A Centg3; RAS, centaurin, 85.6 0.41 1.4E-05 45.1 2.9 24 325-348 20-43 (184)
455 3reg_A RHO-like small GTPase; 85.6 0.41 1.4E-05 44.9 3.0 24 326-349 24-47 (194)
456 1moz_A ARL1, ADP-ribosylation 85.6 0.28 9.5E-06 45.3 1.7 22 325-346 18-39 (183)
457 3k53_A Ferrous iron transport 85.6 0.37 1.3E-05 48.7 2.8 23 326-348 4-26 (271)
458 4a1f_A DNAB helicase, replicat 85.5 0.57 1.9E-05 49.7 4.3 35 324-358 45-82 (338)
459 2bcg_Y Protein YP2, GTP-bindin 85.4 0.41 1.4E-05 45.5 2.8 23 326-348 9-31 (206)
460 3oes_A GTPase rhebl1; small GT 85.4 0.41 1.4E-05 45.4 2.8 25 325-349 24-48 (201)
461 3tui_C Methionine import ATP-b 85.4 0.33 1.1E-05 52.1 2.4 26 325-350 54-79 (366)
462 2gf0_A GTP-binding protein DI- 85.3 0.41 1.4E-05 44.8 2.8 22 326-347 9-30 (199)
463 1zbd_A Rabphilin-3A; G protein 85.3 0.41 1.4E-05 45.2 2.8 23 326-348 9-31 (203)
464 1ksh_A ARF-like protein 2; sma 85.3 0.4 1.4E-05 44.5 2.7 23 325-347 18-40 (186)
465 2fh5_B SR-beta, signal recogni 85.1 0.46 1.6E-05 45.3 3.1 24 326-349 8-31 (214)
466 3qks_A DNA double-strand break 85.1 0.49 1.7E-05 46.0 3.3 31 321-351 19-49 (203)
467 2hup_A RAS-related protein RAB 85.0 0.38 1.3E-05 45.9 2.4 23 326-348 30-52 (201)
468 3cph_A RAS-related protein SEC 84.8 0.47 1.6E-05 45.0 3.0 23 326-348 21-43 (213)
469 1fzq_A ADP-ribosylation factor 84.8 0.42 1.4E-05 44.7 2.5 24 325-348 16-39 (181)
470 1gwn_A RHO-related GTP-binding 84.8 0.45 1.5E-05 45.8 2.8 23 326-348 29-51 (205)
471 2eyq_A TRCF, transcription-rep 84.7 1.9 6.6E-05 52.8 9.0 21 326-346 625-645 (1151)
472 2ew1_A RAS-related protein RAB 84.6 0.46 1.6E-05 45.6 2.8 23 326-348 27-49 (201)
473 1zj6_A ADP-ribosylation factor 84.4 0.47 1.6E-05 44.3 2.7 23 325-347 16-38 (187)
474 2atx_A Small GTP binding prote 84.4 0.49 1.7E-05 44.4 2.8 23 326-348 19-41 (194)
475 2fu5_C RAS-related protein RAB 84.4 0.32 1.1E-05 45.0 1.5 22 326-347 9-30 (183)
476 4bas_A ADP-ribosylation factor 84.2 0.42 1.4E-05 44.7 2.3 23 325-347 17-39 (199)
477 2j1l_A RHO-related GTP-binding 84.0 0.44 1.5E-05 45.9 2.4 23 325-347 34-56 (214)
478 2b6h_A ADP-ribosylation factor 84.0 0.5 1.7E-05 44.7 2.7 22 325-346 29-50 (192)
479 2yv5_A YJEQ protein; hydrolase 83.9 0.54 1.9E-05 48.7 3.2 24 325-349 165-188 (302)
480 4f4c_A Multidrug resistance pr 83.9 0.98 3.4E-05 56.2 6.0 37 324-360 1104-1142(1321)
481 2il1_A RAB12; G-protein, GDP, 83.9 0.49 1.7E-05 44.6 2.6 22 326-347 27-48 (192)
482 3qf7_A RAD50; ABC-ATPase, ATPa 83.9 0.54 1.9E-05 50.1 3.3 29 321-349 19-47 (365)
483 2q3h_A RAS homolog gene family 83.9 0.52 1.8E-05 44.4 2.8 23 325-347 20-42 (201)
484 2qnr_A Septin-2, protein NEDD5 83.9 0.43 1.5E-05 49.5 2.4 23 326-348 19-41 (301)
485 2fv8_A H6, RHO-related GTP-bin 83.8 0.52 1.8E-05 45.0 2.8 24 325-348 25-48 (207)
486 2xzl_A ATP-dependent helicase 83.8 0.56 1.9E-05 55.4 3.6 23 325-347 375-397 (802)
487 4aby_A DNA repair protein RECN 83.7 0.36 1.2E-05 51.6 1.8 31 321-351 56-86 (415)
488 2o52_A RAS-related protein RAB 83.7 0.51 1.7E-05 44.9 2.7 22 326-347 26-47 (200)
489 2cjw_A GTP-binding protein GEM 83.6 0.57 2E-05 44.4 3.0 23 326-348 7-29 (192)
490 2gco_A H9, RHO-related GTP-bin 83.6 0.54 1.9E-05 44.6 2.8 24 325-348 25-48 (201)
491 3rc3_A ATP-dependent RNA helic 83.6 1.1 3.8E-05 51.8 5.9 20 324-343 154-173 (677)
492 2f7s_A C25KG, RAS-related prot 83.5 0.54 1.8E-05 45.0 2.8 22 326-347 26-47 (217)
493 1tq4_A IIGP1, interferon-induc 83.5 0.89 3E-05 49.6 4.8 24 326-349 70-93 (413)
494 3cbq_A GTP-binding protein REM 83.4 0.45 1.5E-05 45.3 2.1 21 326-346 24-44 (195)
495 1qhl_A Protein (cell division 83.4 0.3 1E-05 48.9 1.0 25 326-350 28-52 (227)
496 1oyw_A RECQ helicase, ATP-depe 83.4 2.4 8.1E-05 47.2 8.3 32 326-357 41-72 (523)
497 2j0v_A RAC-like GTP-binding pr 83.3 0.56 1.9E-05 44.7 2.8 23 326-348 10-32 (212)
498 2rcn_A Probable GTPase ENGC; Y 83.3 0.57 2E-05 50.1 3.1 27 324-350 214-240 (358)
499 2v1x_A ATP-dependent DNA helic 83.3 1.6 5.5E-05 49.5 7.0 22 326-347 60-81 (591)
500 3cio_A ETK, tyrosine-protein k 83.3 2.4 8.3E-05 43.7 7.8 34 326-359 105-142 (299)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=100.00 E-value=2.3e-43 Score=379.11 Aligned_cols=346 Identities=58% Similarity=0.961 Sum_probs=281.4
Q ss_pred CCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHH
Q 005762 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (678)
Q Consensus 261 ~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~ 340 (678)
.++|+++.+.|++.|+||+.+|+.|..++.+++++...... ...+..++.++||+||||||||+
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~----------------~~~~~~~~~~vll~GppGtGKT~ 66 (363)
T 3hws_A 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT----------------SNGVELGKSNILLIGPTGSGKTL 66 (363)
T ss_dssp CCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSC----------------SSSCCCCCCCEEEECCTTSSHHH
T ss_pred CCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccc----------------cccccCCCCeEEEECCCCCCHHH
Confidence 57899999999999999999999999999988877643221 11223356899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHH
Q 005762 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (678)
Q Consensus 341 LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~v 420 (678)
+|++||+.++.+|+.++|+++...+|+|+.....+..++..+...+..+.++||||||||++...+...+.+.+.+++++
T Consensus 67 la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~ 146 (363)
T 3hws_A 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGV 146 (363)
T ss_dssp HHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHH
T ss_pred HHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHH
Confidence 99999999999999999999998889998878888999988887778888999999999999988777777788888889
Q ss_pred HHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhccc-CCCCcCcccccccccCCCchHh
Q 005762 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQD-SSIGFGAPVRANMRAGVTDAAV 499 (678)
Q Consensus 421 q~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~-~~igF~~~~~~~~~~~~~~~~~ 499 (678)
|+.||++|||..+.++..+.........+++.++|++|||+|++.++++++.++..+ ..+||........ ....
T Consensus 147 ~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~-----~~~~ 221 (363)
T 3hws_A 147 QQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS-----DKAS 221 (363)
T ss_dssp HHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC-----------------CCSC
T ss_pred HHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccc-----cchh
Confidence 999999999888887777777777777889999999999999999999999998776 8899987654321 1234
Q ss_pred HHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 005762 500 TSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (678)
Q Consensus 500 ~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a 579 (678)
...+++.+.++++.+++|.|+|++||+.++.|.+|+.+++.+|+..+++.+.++|.+.+...+..+.++++++++|++++
T Consensus 222 ~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 222 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp HHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred hHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhh
Confidence 56889999999999999999999999999999999999999999988888999999998888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccccCCCCCCC
Q 005762 580 TAKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEESVGSVDAPG 631 (678)
Q Consensus 580 ~~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~v~~~~~~~ 631 (678)
|..++|+|+|+++||+++.+++++++... .++.++||+++|.....+-
T Consensus 302 ~~~~~gaR~L~~~ie~~~~~~l~~~~~~~----~~~~~~I~~~~v~~~~~~~ 349 (363)
T 3hws_A 302 MARKTGARGLRSIVEAALLDTMYDLPSME----DVEKVVIDESVIDGQSEPL 349 (363)
T ss_dssp HHTTCTTTTHHHHHHHHHHHHHHSTTTCC----CSEEEECHHHHTTCCSCCE
T ss_pred cCCccCchHHHHHHHHHHHHHHHhccccc----CCceeEEcHHHHhCcCCce
Confidence 99999999999999999999999998763 5679999999999776554
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=100.00 E-value=8.4e-39 Score=344.87 Aligned_cols=359 Identities=49% Similarity=0.832 Sum_probs=265.8
Q ss_pred CCCCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHH
Q 005762 259 EDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGK 338 (678)
Q Consensus 259 ~~~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGK 338 (678)
...++++++.+.|+++|+||+.+|+.|..++.+||++......-. ......+.........+...+.++||+|||||||
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~-~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGK 85 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLK-KQDNQDSNVELEHLEEVELSKSNILLIGPTGSGK 85 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSH
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhh-hccccccccccccccccccCCCCEEEECCCCCCH
Confidence 346789999999999999999999999999998888765311000 0000000000000112233467899999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 339 TLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 339 T~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
|++|+++|+.++.+|+.++|+.+...+|+|...+..+..++....+.+..+.++||||||||++...+.......+.+++
T Consensus 86 T~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 165 (376)
T 1um8_A 86 TLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGE 165 (376)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CH
T ss_pred HHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchH
Confidence 99999999999999999999999888899988788888888877777777889999999999999876666667788888
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
++|+.||++||+..+.++..+.........+.++++|++||+++++.+|++.+.+|.....+||..+.....
T Consensus 166 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~-------- 237 (376)
T 1um8_A 166 GVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK-------- 237 (376)
T ss_dssp HHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT--------
T ss_pred HHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhcc--------
Confidence 899999999998887778788777777888899999999999999999999999998888899987654210
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
....+++.+.++++....|.|+|++||+.++.|++|+++++.+|+...++.+.++|.+.+...+..+.++++++++|+++
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 317 (376)
T 1um8_A 238 EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQL 317 (376)
T ss_dssp TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHH
Confidence 11235566777888888999999999999999999999999999998777889999988887888999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccccCCCCCCC
Q 005762 579 ATAKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEESVGSVDAPG 631 (678)
Q Consensus 579 a~~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~v~~~~~~~ 631 (678)
+|...+|+|.|+++|++++.+++++++.. ....++||+++|.....+-
T Consensus 318 ~~~~~~~~R~L~~~le~~~~~~~~~~~~~-----~~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 318 ALERKTGARGLRAIIEDFCLDIMFDLPKL-----KGSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHTTCTGGGHHHHHHHHHHHHHHTGGGG-----TTSEEEECHHHHTTSSCCE
T ss_pred hcccccCcHHHHHHHHHHHHHHHhhccCC-----CCCEEEEeHHHhcCCCCce
Confidence 99888999999999999999999998764 2358999999998766554
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=7.4e-39 Score=353.49 Aligned_cols=287 Identities=40% Similarity=0.660 Sum_probs=237.9
Q ss_pred CCCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHH
Q 005762 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (678)
Q Consensus 261 ~~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~ 340 (678)
.++|+++.+.|+++|+||+++|+.|..++.++|++..... . -.....+.++||+||||||||+
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~---~--------------~~~~~~~~~iLl~GppGtGKT~ 65 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQE---P--------------LRHEVTPKNILMIGPTGVGKTE 65 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCT---T--------------TTTTCCCCCEEEECCTTSSHHH
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhcccc---c--------------cccccCCceEEEEcCCCCCHHH
Confidence 4799999999999999999999999999999988764211 0 0112245899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhc-------------------------------------
Q 005762 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAE------------------------------------- 383 (678)
Q Consensus 341 LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~------------------------------------- 383 (678)
+|++||+.++.+|+.++++.+...+|+|.+.+..++.+|..+.
T Consensus 66 lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~ 145 (444)
T 1g41_A 66 IARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGE 145 (444)
T ss_dssp HHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC-------------------------
T ss_pred HHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999878999876777777665430
Q ss_pred ---------------------------------------hh---------------------------------------
Q 005762 384 ---------------------------------------FN--------------------------------------- 385 (678)
Q Consensus 384 ---------------------------------------~~--------------------------------------- 385 (678)
..
T Consensus 146 ~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~ 225 (444)
T 1g41_A 146 VENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKA 225 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHH
Confidence 00
Q ss_pred -------------------Hhhh-cCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCC
Q 005762 386 -------------------VEAA-QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPR 445 (678)
Q Consensus 386 -------------------v~~a-~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~ 445 (678)
+..+ ..+|||+|||||++...+ +.++|+|++++|++||++|||..+++
T Consensus 226 l~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~---------- 293 (444)
T 1g41_A 226 LIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVST---------- 293 (444)
T ss_dssp CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEE----------
T ss_pred HHHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhccccccc----------
Confidence 0122 567999999999987533 36789999999999999999887764
Q ss_pred CCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCccccccc
Q 005762 446 GDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRF 525 (678)
Q Consensus 446 ~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~ 525 (678)
..+.++++|++|||||+|.. ..+.| ++|||++||
T Consensus 294 -~~~~~d~~~ilfI~~gaf~~----------------------------------------~~~~d-----lipel~~R~ 327 (444)
T 1g41_A 294 -KHGMVKTDHILFIASGAFQV----------------------------------------ARPSD-----LIPELQGRL 327 (444)
T ss_dssp -TTEEEECTTCEEEEEECCSS----------------------------------------CCGGG-----SCHHHHTTC
T ss_pred -ccceecCCcEEEEecccccc----------------------------------------CChhh-----cchHHhccc
Confidence 22689999999999999852 01122 779999999
Q ss_pred ceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHHH
Q 005762 526 PILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATA-----KNTGARGLRAILESILTEA 600 (678)
Q Consensus 526 ~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~-----~~~GAR~Lr~iIE~il~~a 600 (678)
+++|.|++|+++|+.+|+++++++|.+||.+++...++++.|+++|++.|++.++. .++|||.|+++||+++.+.
T Consensus 328 ~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~ 407 (444)
T 1g41_A 328 PIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKI 407 (444)
T ss_dssp CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHH
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998654 8999999999999999999
Q ss_pred HhcCCCCCCCCCCcceEEEcccccCCC
Q 005762 601 MYEIPDVKTGSDGVDAVVVDEESVGSV 627 (678)
Q Consensus 601 ~~~~p~~~~~~~~i~~v~v~~e~v~~~ 627 (678)
++++|+.+ ...++||.+.|...
T Consensus 408 ~~~~~~~~-----~~~~~i~~~~v~~~ 429 (444)
T 1g41_A 408 SFSASDMN-----GQTVNIDAAYVADA 429 (444)
T ss_dssp HHHGGGCT-----TCEEEECHHHHHHH
T ss_pred HhhccccC-----CCeEEEeHHHHHHh
Confidence 99998653 25899999988743
No 4
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.95 E-value=1.1e-27 Score=248.10 Aligned_cols=286 Identities=40% Similarity=0.655 Sum_probs=219.3
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
.+|.++.+.|++.|+||+.+++.|..++..++.+... ...+ .....+.++||+||||||||++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~---------~~~~--------~~~~~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQL---------QEPL--------RHEVTPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSS---------CHHH--------HHHCCCCCEEEECCTTSSHHHH
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhh---------cccc--------cccCCCceEEEECCCCCCHHHH
Confidence 5899999999999999999999999998765432110 0000 0011347899999999999999
Q ss_pred HHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhh-cCcEEEEcCccchhhhhccccccCCCchhHH
Q 005762 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAA-QQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (678)
Q Consensus 342 AralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a-~~gILfIDEIDkl~~~~~~~~~~~d~s~~~v 420 (678)
|+++|+.++.+|+.++|+++...+|+|.+....+..++....+.+..+ .++||||||||++...... .+.+.+.+.+
T Consensus 67 a~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~ 144 (310)
T 1ofh_A 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGV 144 (310)
T ss_dssp HHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHH
T ss_pred HHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHH
Confidence 999999999999999999998778999887777888887665444443 4789999999999876321 2344455667
Q ss_pred HHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhH
Q 005762 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (678)
Q Consensus 421 q~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~ 500 (678)
++.|+++||+..+.. .. -.+...+++||+++++...
T Consensus 145 ~~~Ll~~le~~~~~~---------~~--~~~~~~~~~~i~~~~~~~~--------------------------------- 180 (310)
T 1ofh_A 145 QRDLLPLVEGSTVST---------KH--GMVKTDHILFIASGAFQVA--------------------------------- 180 (310)
T ss_dssp HHHHHHHHHCCEEEE---------TT--EEEECTTCEEEEEECCSSS---------------------------------
T ss_pred HHHHHHHhcCCeEec---------cc--ccccCCcEEEEEcCCcccC---------------------------------
Confidence 999999999654432 01 1456778899988764210
Q ss_pred HHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhc
Q 005762 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (678)
Q Consensus 501 ~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~ 580 (678)
. ...+.|+|++||+.++.|++|+.+++.+|+....+.+.++|.+.+...+..+.++++++++|++++|
T Consensus 181 -------~-----~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 248 (310)
T 1ofh_A 181 -------R-----PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 248 (310)
T ss_dssp -------C-----GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHH
T ss_pred -------C-----cccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhh
Confidence 0 0127789999999989999999999999999766667788888777778889999999999999987
Q ss_pred C-----CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccccCCC
Q 005762 581 A-----KNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEESVGSV 627 (678)
Q Consensus 581 ~-----~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~v~~~ 627 (678)
. ...++|.|++++++++..+.++...... ..+.|+.++|...
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~-----~~~~i~~~~v~~~ 295 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSASDMNG-----QTVNIDAAYVADA 295 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTT-----CEEEECHHHHHHH
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCCccccC-----CEEEEeeHHHHHH
Confidence 5 3688999999999999888776653321 3677888877643
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.93 E-value=1.2e-25 Score=263.37 Aligned_cols=272 Identities=21% Similarity=0.321 Sum_probs=195.3
Q ss_pred cccCCCCCCCCCCC----HHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccC
Q 005762 250 SRWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEK 325 (678)
Q Consensus 250 ~~~~g~~~~~~~~~----p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~ 325 (678)
..|+++|+...... ...+++.|.+.|+||+.+++.|..++.... .+... ...+.
T Consensus 431 ~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~-----~g~~~-----------------~~~p~ 488 (758)
T 1r6b_X 431 ARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMAR-----AGLGH-----------------EHKPV 488 (758)
T ss_dssp HHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHH-----TTCSC-----------------TTSCS
T ss_pred HHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHh-----cccCC-----------------CCCCc
Confidence 45777776654433 345788899999999999999988875321 11100 01123
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccc-----------cccccchHHHHHHHHHhhchhHhhhcCcEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQQGMV 394 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~s-----------gyvG~~~~~~l~~l~~~a~~~v~~a~~gIL 394 (678)
.++||+||||||||++|+++|+.++.+|+.+||+++.+. ||+|.+....+...+.. +.++||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-------~~~~vl 561 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-------HPHAVL 561 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH-------CSSEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh-------CCCcEE
Confidence 589999999999999999999999999999999987642 57776644555555443 356899
Q ss_pred EEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHh
Q 005762 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISE 473 (678)
Q Consensus 395 fIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~ 473 (678)
||||||++++. +++.|+++|| |.... . ....++..|++||+|+|... +.++
T Consensus 562 ~lDEi~~~~~~--------------~~~~Ll~~le~~~~~~--~---------~g~~~~~~~~~iI~tsN~~~-~~~~-- 613 (758)
T 1r6b_X 562 LLDEIEKAHPD--------------VFNILLQVMDNGTLTD--N---------NGRKADFRNVVLVMTTNAGV-RETE-- 613 (758)
T ss_dssp EEETGGGSCHH--------------HHHHHHHHHHHSEEEE--T---------TTEEEECTTEEEEEEECSSC-C-----
T ss_pred EEeCccccCHH--------------HHHHHHHHhcCcEEEc--C---------CCCEEecCCeEEEEecCcch-hhhh--
Confidence 99999999887 9999999999 44332 1 23467889999999988632 1111
Q ss_pred hcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHH
Q 005762 474 RRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQ 553 (678)
Q Consensus 474 r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q 553 (678)
...+||...... .. ..+.++..|.|+|++||+.+|.|++|+++++.+|+...+. +
T Consensus 614 ---~~~~g~~~~~~~--------~~----------~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~----~ 668 (758)
T 1r6b_X 614 ---RKSIGLIHQDNS--------TD----------AMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV----E 668 (758)
T ss_dssp -----------------------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH----H
T ss_pred ---hcccCccccchH--------HH----------HHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHH----H
Confidence 123455432110 00 1122344599999999999999999999999999997544 4
Q ss_pred HHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhc
Q 005762 554 YKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 554 ~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
+...+...++.+.++++++++|++++|..++|+|.|+++|++.+.+.+.+
T Consensus 669 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 669 LQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp HHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 44445556788999999999999999999999999999999999886654
No 6
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.93 E-value=6.3e-25 Score=228.55 Aligned_cols=261 Identities=23% Similarity=0.335 Sum_probs=183.1
Q ss_pred HHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHH
Q 005762 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (678)
Q Consensus 264 p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAr 343 (678)
..++.+.|.+.++||+.+++.|..++......+.. ...+..++||+||||||||++|+
T Consensus 8 l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~----------------------~~~~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 8 LLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKD----------------------PNRPIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp HHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSC----------------------TTSCSEEEEEESCSSSSHHHHHH
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCC----------------------CCCCceEEEEECCCCcCHHHHHH
Confidence 34578889999999999999999988643211100 01123589999999999999999
Q ss_pred HHHHHh---CCCEEEEeccccccc-----------cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccc
Q 005762 344 TLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESL 409 (678)
Q Consensus 344 alA~~l---~~~fv~id~s~l~~s-----------gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~ 409 (678)
+||+.+ +.+|+.++|+.+... +|+|......+...+.. +.++||||||||++.+.
T Consensus 66 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~vl~lDEi~~l~~~---- 134 (311)
T 4fcw_A 66 TLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-------RPYSVILFDAIEKAHPD---- 134 (311)
T ss_dssp HHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH-------CSSEEEEEETGGGSCHH----
T ss_pred HHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHh-------CCCeEEEEeChhhcCHH----
Confidence 999998 567999999876532 23333322233333332 35589999999999876
Q ss_pred cccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccc
Q 005762 410 NISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRAN 489 (678)
Q Consensus 410 ~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~ 489 (678)
+|+.|+++|+...+.. .....++..+++||+|+|... ..+...... .
T Consensus 135 ----------~~~~Ll~~le~~~~~~----------~~~~~~~~~~~iiI~ttn~~~--~~i~~~~~~-----~------ 181 (311)
T 4fcw_A 135 ----------VFNILLQMLDDGRLTD----------SHGRTVDFRNTVIIMTSNLGS--PLILEGLQK-----G------ 181 (311)
T ss_dssp ----------HHHHHHHHHHHSEEEC----------TTSCEEECTTEEEEEEESTTH--HHHHTTTTS-----C------
T ss_pred ----------HHHHHHHHHhcCEEEc----------CCCCEEECCCcEEEEecccCH--HHHHhhhcc-----c------
Confidence 9999999999444321 122367888999999888531 112111000 0
Q ss_pred cccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCH
Q 005762 490 MRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569 (678)
Q Consensus 490 ~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ 569 (678)
.... .+.+.+. +.+...|.|+|++||+.++.|.+++.+++.+|+...+ +++...+...+..+.+++
T Consensus 182 ----~~~~----~l~~~~~--~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l----~~~~~~~~~~~~~~~~~~ 247 (311)
T 4fcw_A 182 ----WPYE----RIRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQM----SYLRARLAEKRISLELTE 247 (311)
T ss_dssp ----CCSS----THHHHTH--HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHT----HHHHHHHHTTTCEEEECH
T ss_pred ----ccHH----HHHHHHH--HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHH----HHHHHHHHhCCcEEEeCH
Confidence 0000 0111111 1124458999999999999999999999999999644 444444544577899999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcC
Q 005762 570 KALRVIAKKATAKNTGARGLRAILESILTEAMYEI 604 (678)
Q Consensus 570 eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~ 604 (678)
+++++|+++.|...+|+|+|+++|++++..++.+.
T Consensus 248 ~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 248 AAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp HHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999889999999999999998877653
No 7
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.92 E-value=8.6e-25 Score=256.42 Aligned_cols=258 Identities=22% Similarity=0.339 Sum_probs=180.0
Q ss_pred CcccCCCCCCCCCC----CHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccccc
Q 005762 249 GSRWGGSNLGEDLP----TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (678)
Q Consensus 249 ~~~~~g~~~~~~~~----~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (678)
+..|+++|+..... ....+.+.|.+.|+||+.+++.|..++.... .... ....+
T Consensus 463 v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~-----~~~~-----------------~~~~p 520 (758)
T 3pxi_A 463 VSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRAR-----AGLK-----------------DPKRP 520 (758)
T ss_dssp HHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHT-----TTCS-----------------CTTSC
T ss_pred HHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHH-----cccC-----------------CCCCC
Confidence 45677877665322 2334778888999999999999998886321 0000 00112
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 401 (678)
..++||+||||||||++|++||+.+ +.+|+.+||+++.+. +... ...+...+.. ..++||||||||+
T Consensus 521 ~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~~~~~-------~~~~vl~lDEi~~ 590 (758)
T 3pxi_A 521 IGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTEKVRR-------KPYSVVLLDAIEK 590 (758)
T ss_dssp SEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHHHHHH-------CSSSEEEEECGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-cccc--cchhhHHHHh-------CCCeEEEEeCccc
Confidence 2479999999999999999999998 679999999998854 2222 2233333333 3568999999999
Q ss_pred hhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCC
Q 005762 402 ITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (678)
Q Consensus 402 l~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~i 480 (678)
+++. +++.||++|| |..... . ...++..|++||+|+|...-.
T Consensus 591 ~~~~--------------~~~~Ll~~le~g~~~~~--~---------g~~~~~~~~~iI~ttn~~~~~------------ 633 (758)
T 3pxi_A 591 AHPD--------------VFNILLQVLEDGRLTDS--K---------GRTVDFRNTILIMTSNVGASE------------ 633 (758)
T ss_dssp SCHH--------------HHHHHHHHHHHSBCC----------------CCBCTTCEEEEEESSSTTC------------
T ss_pred cCHH--------------HHHHHHHHhccCeEEcC--C---------CCEeccCCeEEEEeCCCChhh------------
Confidence 9886 9999999999 443321 1 123566788888888743100
Q ss_pred CcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhc
Q 005762 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (678)
Q Consensus 481 gF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~ 560 (678)
...+ .+.+...|.|+|++||+.+|.|++|+++++.+|+...+..+ .+.+..
T Consensus 634 -------------------~~~~------~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~----~~~~~~ 684 (758)
T 3pxi_A 634 -------------------KDKV------MGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQL----TKRLKE 684 (758)
T ss_dssp -------------------CHHH------HHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHH----HHHHHT
T ss_pred -------------------HHHH------HHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHH----HHHHHh
Confidence 0000 11234459999999999999999999999999999754444 444555
Q ss_pred CCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcC
Q 005762 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEI 604 (678)
Q Consensus 561 ~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~ 604 (678)
.+..+.++++++++|++.+|...+|+|+|+++|++.+...+.+.
T Consensus 685 ~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~ 728 (758)
T 3pxi_A 685 QDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEE 728 (758)
T ss_dssp TTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHH
T ss_pred CCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999999999998888754
No 8
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.91 E-value=3.9e-24 Score=254.15 Aligned_cols=276 Identities=24% Similarity=0.357 Sum_probs=189.5
Q ss_pred CcccCCCCCCCCCCCHH----HHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhcccccccccc
Q 005762 249 GSRWGGSNLGEDLPTPK----EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (678)
Q Consensus 249 ~~~~~g~~~~~~~~~p~----el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (678)
+..|+++|+........ .+.+.|.+.|+||+.+++.|..++.... .+.. +...+
T Consensus 530 v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~-----~g~~-----------------~~~~p 587 (854)
T 1qvr_A 530 VSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRAR-----AGLK-----------------DPNRP 587 (854)
T ss_dssp HHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHG-----GGCS-----------------CSSSC
T ss_pred HHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHh-----cccC-----------------CCCCC
Confidence 45678876655433332 2566777789999999999988885321 1100 00012
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc-----------cccccchHHHHHHHHHhhchhHhhhc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s-----------gyvG~~~~~~l~~l~~~a~~~v~~a~ 390 (678)
..++||+||||||||++|++||+.+ +.+|+.++|+++.+. +|+|+...+.+...+.. ..
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-------~~ 660 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-------RP 660 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHH-------CS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh-------CC
Confidence 3589999999999999999999999 779999999977642 45565533444444433 24
Q ss_pred CcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHH
Q 005762 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (678)
Q Consensus 391 ~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~ 470 (678)
++||||||||++++. +++.|+++||...+. + .....++.+|++||+|+|... +.+
T Consensus 661 ~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~~~-~---------~~g~~vd~~~~iiI~tsn~~~-~~~ 715 (854)
T 1qvr_A 661 YSVILFDEIEKAHPD--------------VFNILLQILDDGRLT-D---------SHGRTVDFRNTVIILTSNLGS-PLI 715 (854)
T ss_dssp SEEEEESSGGGSCHH--------------HHHHHHHHHTTTEEC-C---------SSSCCEECTTEEEEEECCTTH-HHH
T ss_pred CeEEEEecccccCHH--------------HHHHHHHHhccCceE-C---------CCCCEeccCCeEEEEecCcCh-HHH
Confidence 589999999999886 999999999943332 1 123467889999999988531 111
Q ss_pred HHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHH
Q 005762 471 ISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNAL 550 (678)
Q Consensus 471 i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L 550 (678)
.... +++. .. ..+.+.+. +.++..|.|+|++||+.++.|.||+.+++..|+...+.
T Consensus 716 ~~~~------~~~~----------~~----~~l~~~v~--~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~-- 771 (854)
T 1qvr_A 716 LEGL------QKGW----------PY----ERIRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLS-- 771 (854)
T ss_dssp HHHH------HTTC----------CH----HHHHHHHH--HHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHH--
T ss_pred hhhc------cccc----------ch----HHHHHHHH--HHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHH--
Confidence 1100 0000 00 11111111 11355699999999999999999999999999997544
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcC
Q 005762 551 GKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEI 604 (678)
Q Consensus 551 ~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~ 604 (678)
++.+.+...++.+.|+++++++|++++|...+|+|.|+++|++.+...+.+.
T Consensus 772 --~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 772 --YLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp --HHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred --HHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 4444455557789999999999999999999999999999999988887653
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.9e-22 Score=219.91 Aligned_cols=222 Identities=23% Similarity=0.334 Sum_probs=163.6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|.|++++|+.|.++|....+. +......| ..+++++||+||||||||++|+++|+.++.+|
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~---pe~f~~~g---------------i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKH---PELFESLG---------------IAQPKGVILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC---HHHHHHHT---------------CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred HhCCHHHHHHHHHHHHHHHHhC---HHHHHhCC---------------CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 3899999999999999744331 11100001 12358999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.++++++. +.|+|+. +..++.+|..+.. ..++||||||||.+.+.+...+.+.+.....+.+.||..|||..
T Consensus 211 ~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar~----~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~- 283 (405)
T 4b4t_J 211 IRVSGAELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE- 283 (405)
T ss_dssp EEEEGGGGS-CSSTTHH-HHHHHHHHHHHHH----TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-
T ss_pred eEEEhHHhh-ccccchH-HHHHHHHHHHHHH----hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-
Confidence 999999998 5699998 8899999988765 37899999999999987665544444444567888999998632
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
...++++|+|+|..+
T Consensus 284 ------------------~~~~V~vIaATNrpd----------------------------------------------- 298 (405)
T 4b4t_J 284 ------------------TSKNIKIIMATNRLD----------------------------------------------- 298 (405)
T ss_dssp ------------------CCCCEEEEEEESCSS-----------------------------------------------
T ss_pred ------------------CCCCeEEEeccCChh-----------------------------------------------
Confidence 123456666666432
Q ss_pred hhcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 514 AYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 514 ~~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.|.|+ +|||..|.|+.++.++..+|++.. . .+..+. .+--++.||+.+ .++.+..|++
T Consensus 299 --~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~----~---------~~~~l~-~dvdl~~lA~~t--~G~SGADi~~ 360 (405)
T 4b4t_J 299 --ILDPALLRPGRIDRKIEFPPPSVAARAEILRIH----S---------RKMNLT-RGINLRKVAEKM--NGCSGADVKG 360 (405)
T ss_dssp --SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH----H---------TTSBCC-SSCCHHHHHHHC--CSCCHHHHHH
T ss_pred --hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHH----h---------cCCCCC-ccCCHHHHHHHC--CCCCHHHHHH
Confidence 1556665 499999999999999999998742 1 122211 111267788864 4677889999
Q ss_pred HHHHHHHHHHhc
Q 005762 592 ILESILTEAMYE 603 (678)
Q Consensus 592 iIE~il~~a~~~ 603 (678)
++......++.+
T Consensus 361 l~~eA~~~Air~ 372 (405)
T 4b4t_J 361 VCTEAGMYALRE 372 (405)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 998887777754
No 10
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.2e-22 Score=215.45 Aligned_cols=220 Identities=21% Similarity=0.281 Sum_probs=163.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|.|++++|+.|.++|....+. .......| ..++.+|||+||||||||++|++||+.++.+|+
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~---pe~f~~~G---------------i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi 245 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTH---PELYEEMG---------------IKPPKGVILYGAPGTGKTLLAKAVANQTSATFL 245 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHC---CHHHHHHT---------------CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred cCcHHHHHHHHHHHHHHHHhC---HHHHHhCC---------------CCCCCCCceECCCCchHHHHHHHHHHHhCCCEE
Confidence 899999999999999744321 10000000 123589999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++++++. +.|+|+. ++.++.+|..+.. ..++||||||||.+...+...+.+.+.....+...||..|||..
T Consensus 246 ~v~~s~l~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-- 317 (437)
T 4b4t_I 246 RIVGSELI-QKYLGDG-PRLCRQIFKVAGE----NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-- 317 (437)
T ss_dssp EEESGGGC-CSSSSHH-HHHHHHHHHHHHH----TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC--
T ss_pred EEEHHHhh-hccCchH-HHHHHHHHHHHHh----cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC--
Confidence 99999998 5699998 8889999988755 37899999999999988765544444444567778888888521
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++++|+|+|..+
T Consensus 318 -----------------~~~~ViVIaATNrpd------------------------------------------------ 332 (437)
T 4b4t_I 318 -----------------DRGDVKVIMATNKIE------------------------------------------------ 332 (437)
T ss_dssp -----------------CSSSEEEEEEESCST------------------------------------------------
T ss_pred -----------------CCCCEEEEEeCCChh------------------------------------------------
Confidence 123566777666432
Q ss_pred hcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH-HHHHHHHhhcCCCCCHHHHHH
Q 005762 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 515 ~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e-al~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.|+|+. |||..|.|+.++.++..+|++.. . .+.. ++++ -++.||+.+ .++....|++
T Consensus 333 -~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~----l---------~~~~--l~~dvdl~~LA~~T--~GfSGADI~~ 394 (437)
T 4b4t_I 333 -TLDPALIRPGRIDRKILFENPDLSTKKKILGIH----T---------SKMN--LSEDVNLETLVTTK--DDLSGADIQA 394 (437)
T ss_dssp -TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHH----H---------TTSC--BCSCCCHHHHHHHC--CSCCHHHHHH
T ss_pred -hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHH----h---------cCCC--CCCcCCHHHHHHhC--CCCCHHHHHH
Confidence 16777875 99999999999999999998742 1 1222 2222 267788764 4777889999
Q ss_pred HHHHHHHHHHhc
Q 005762 592 ILESILTEAMYE 603 (678)
Q Consensus 592 iIE~il~~a~~~ 603 (678)
++......++.+
T Consensus 395 l~~eA~~~Air~ 406 (437)
T 4b4t_I 395 MCTEAGLLALRE 406 (437)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 998888777754
No 11
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.8e-21 Score=212.93 Aligned_cols=221 Identities=24% Similarity=0.308 Sum_probs=161.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|.|++.+|+.|.+.|....+. +......| ..++.++||+||||||||++|+++|+.++.+|+
T Consensus 183 igGl~~~k~~l~e~v~~pl~~---pe~f~~~g---------------~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~ 244 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKR---ADKFKDMG---------------IRAPKGALMYGPPGTGKTLLARACAAQTNATFL 244 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHC---SHHHHHHC---------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred cCcHHHHHHHHHHHHHHHHhC---HHHHHhCC---------------CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 899999999999998644321 11000001 123689999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++++++. ..|+|+. ++.++.+|..+.. ..++||||||||.+...+...+.+.+.....+...||..|+|..
T Consensus 245 ~v~~s~l~-~~~vGes-e~~ir~lF~~A~~----~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~-- 316 (434)
T 4b4t_M 245 KLAAPQLV-QMYIGEG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-- 316 (434)
T ss_dssp EEEGGGGC-SSCSSHH-HHHHHHHHHHHHH----HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC--
T ss_pred EEehhhhh-hcccchH-HHHHHHHHHHHHh----cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC--
Confidence 99999998 5699998 8889999987754 37899999999999987655443333333456778888888631
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++++|+|+|..+
T Consensus 317 -----------------~~~~ViVIaaTNrp~------------------------------------------------ 331 (434)
T 4b4t_M 317 -----------------SDDRVKVLAATNRVD------------------------------------------------ 331 (434)
T ss_dssp -----------------SSCSSEEEEECSSCC------------------------------------------------
T ss_pred -----------------CCCCEEEEEeCCCch------------------------------------------------
Confidence 123456666666432
Q ss_pred hcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHH
Q 005762 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (678)
Q Consensus 515 ~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~i 592 (678)
.+.|.|+. |||..|.|+.++.++..+|++.. .+. + ...-.+ -++.||+.+ .++.+..|+++
T Consensus 332 -~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~----~~~----~---~~~~dv---dl~~lA~~t--~G~sGADi~~l 394 (434)
T 4b4t_M 332 -VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIH----SRK----M---TTDDDI---NWQELARST--DEFNGAQLKAV 394 (434)
T ss_dssp -CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHH----HHH----S---CBCSCC---CHHHHHHHC--SSCCHHHHHHH
T ss_pred -hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHH----hcC----C---CCCCcC---CHHHHHHhC--CCCCHHHHHHH
Confidence 16777865 99999999999999999998742 111 1 111111 267778764 46778899999
Q ss_pred HHHHHHHHHhc
Q 005762 593 LESILTEAMYE 603 (678)
Q Consensus 593 IE~il~~a~~~ 603 (678)
+......++.+
T Consensus 395 ~~eA~~~a~r~ 405 (434)
T 4b4t_M 395 TVEAGMIALRN 405 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 98887777754
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.6e-21 Score=210.78 Aligned_cols=221 Identities=23% Similarity=0.288 Sum_probs=162.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|.|++.+|+.|.++|....+.. ......| ..++.++||+||||||||++|++||+.++.+|+
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p---~~f~~~g---------------~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNP---EIFQRVG---------------IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCH---HHHHHHC---------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred hCChHHHHHHHHHHHHHHHhCH---HHHHhCC---------------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 8999999999999997543311 1000001 124689999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++++++. +.|+|+. +..++.+|..+.. ..++||||||||.+...+...+...+.....+.+.||..|+|..
T Consensus 245 ~v~~s~l~-sk~~Ges-e~~ir~~F~~A~~----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-- 316 (437)
T 4b4t_L 245 FSPASGIV-DKYIGES-ARIIREMFAYAKE----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD-- 316 (437)
T ss_dssp EEEGGGTC-CSSSSHH-HHHHHHHHHHHHH----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS--
T ss_pred EEehhhhc-cccchHH-HHHHHHHHHHHHh----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc--
Confidence 99999998 5699988 7889999987755 38899999999999988765444444444567888999999631
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++++|+|+|..+
T Consensus 317 -----------------~~~~vivI~ATNrp~------------------------------------------------ 331 (437)
T 4b4t_L 317 -----------------NLGQTKIIMATNRPD------------------------------------------------ 331 (437)
T ss_dssp -----------------CTTSSEEEEEESSTT------------------------------------------------
T ss_pred -----------------CCCCeEEEEecCCch------------------------------------------------
Confidence 123566677666432
Q ss_pred hcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHH
Q 005762 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (678)
Q Consensus 515 ~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~i 592 (678)
.+.|.|+ +|||..|.|+.++.++..+|++.. .+ +..+. .+--++.|++.+ .++.+..|+++
T Consensus 332 -~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~----~~---------~~~~~-~d~dl~~lA~~t--~G~sGADi~~l 394 (437)
T 4b4t_L 332 -TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIH----TA---------KVKKT-GEFDFEAAVKMS--DGFNGADIRNC 394 (437)
T ss_dssp -SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHH----HH---------TSCBC-SCCCHHHHHHTC--CSCCHHHHHHH
T ss_pred -hhCHHHhCCCccceeeecCCcCHHHHHHHHHHH----hc---------CCCCC-cccCHHHHHHhC--CCCCHHHHHHH
Confidence 1566775 569999999999999999998742 11 11111 111257778764 47778899999
Q ss_pred HHHHHHHHHhc
Q 005762 593 LESILTEAMYE 603 (678)
Q Consensus 593 IE~il~~a~~~ 603 (678)
+......++.+
T Consensus 395 ~~eA~~~air~ 405 (437)
T 4b4t_L 395 ATEAGFFAIRD 405 (437)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 98887777654
No 13
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.7e-21 Score=213.55 Aligned_cols=222 Identities=19% Similarity=0.230 Sum_probs=160.5
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|.|++++|+.|.+.|....+. .......| ..++++|||+||||||||++|++||+.++.+|
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~---pe~f~~~G---------------i~pprGILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLS---PERFATLG---------------IDPPKGILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHC---HHHHHHHT---------------CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHhcC---HHHHHHCC---------------CCCCCceEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 3899999999999998643221 11000001 12468999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.++++++. ..|+|+. ++.++.+|..+.. ..++||||||||.+...+.....+.+.....+...||..|+|..
T Consensus 272 i~vs~s~L~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~- 344 (467)
T 4b4t_H 272 IRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD- 344 (467)
T ss_dssp EEEEGGGGC-CCSSSHH-HHHHHHHHHHHHH----TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-
T ss_pred EEEEhHHhh-cccCCHH-HHHHHHHHHHHHh----cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC-
Confidence 999999998 5699998 8889999988765 37899999999999987655444444344456777888888521
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
...++++|+|+|..+
T Consensus 345 ------------------~~~~ViVIaATNrpd----------------------------------------------- 359 (467)
T 4b4t_H 345 ------------------PRGNIKVMFATNRPN----------------------------------------------- 359 (467)
T ss_dssp ------------------CTTTEEEEEECSCTT-----------------------------------------------
T ss_pred ------------------CCCcEEEEeCCCCcc-----------------------------------------------
Confidence 123456666666432
Q ss_pred hhcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 514 AYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 514 ~~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.|.|+ +|||..|.|+.++.++..+|++.. . .+..+. .+--++.|++.+ .++.+..|++
T Consensus 360 --~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~----l---------~~~~l~-~dvdl~~LA~~T--~GfSGADI~~ 421 (467)
T 4b4t_H 360 --TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIH----S---------KSMSVE-RGIRWELISRLC--PNSTGAELRS 421 (467)
T ss_dssp --SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHH----H---------TTSCBC-SSCCHHHHHHHC--CSCCHHHHHH
T ss_pred --cCChhhhccccccEEEEeCCcCHHHHHHHHHHH----h---------cCCCCC-CCCCHHHHHHHC--CCCCHHHHHH
Confidence 1555665 499999999999999999998742 1 122211 111256778764 4677889999
Q ss_pred HHHHHHHHHHhc
Q 005762 592 ILESILTEAMYE 603 (678)
Q Consensus 592 iIE~il~~a~~~ 603 (678)
++......++.+
T Consensus 422 l~~eAa~~Air~ 433 (467)
T 4b4t_H 422 VCTEAGMFAIRA 433 (467)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 998887777754
No 14
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.1e-21 Score=211.41 Aligned_cols=222 Identities=21% Similarity=0.296 Sum_probs=162.0
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
+.|.|++.+|+.|.+.|....+. +......| ..+++++||+||||||||++|+++|+.++.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~---p~~~~~~g---------------~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQ---ADLYEQIG---------------IDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHC---HHHHHHHC---------------CCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHHhC---HHHHHhCC---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34899999999999998744321 10000001 1235899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce
Q 005762 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (678)
Q Consensus 353 fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~ 432 (678)
|+.++++++. ..|+|+. +..++.+|..+.. ..++||||||||.+...+.....+.+.....+.+.||..|+|..
T Consensus 234 ~~~v~~~~l~-~~~~Ge~-e~~ir~lF~~A~~----~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 234 FIRVNGSEFV-HKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp EEEEEGGGTC-CSSCSHH-HHHHHHHHHHHHH----TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred eEEEecchhh-ccccchh-HHHHHHHHHHHHH----cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 9999999998 5699998 8889999987754 37899999999999988765544445445568899999999732
Q ss_pred eecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhh
Q 005762 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (678)
Q Consensus 433 v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edL 512 (678)
...++++|+|+|..+
T Consensus 308 -------------------~~~~v~vI~aTN~~~---------------------------------------------- 322 (428)
T 4b4t_K 308 -------------------QSTNVKVIMATNRAD---------------------------------------------- 322 (428)
T ss_dssp -------------------SSCSEEEEEEESCSS----------------------------------------------
T ss_pred -------------------CCCCEEEEEecCChh----------------------------------------------
Confidence 123566777766432
Q ss_pred hhhcCCcccc--cccceEEecC-CcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH-HHHHHHHhhcCCCCCHHH
Q 005762 513 IAYGLIPEFV--GRFPILVSLT-ALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARG 588 (678)
Q Consensus 513 i~~g~~Pefl--~R~~~iv~f~-~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e-al~~La~~a~~~~~GAR~ 588 (678)
.+.|.|+ +|||..|.|+ .++.++...|+... .+ +.. +.++ -++.||+.+ .++.+..
T Consensus 323 ---~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~----~~---------~~~--l~~~~dl~~lA~~t--~G~sgad 382 (428)
T 4b4t_K 323 ---TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI----AS---------KMS--LAPEADLDSLIIRN--DSLSGAV 382 (428)
T ss_dssp ---SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHH----HH---------SSC--BCTTCCHHHHHHHT--TTCCHHH
T ss_pred ---hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHH----hc---------CCC--CCcccCHHHHHHHC--CCCCHHH
Confidence 1455565 4999999996 56888888888742 11 111 2112 267788764 4777889
Q ss_pred HHHHHHHHHHHHHhc
Q 005762 589 LRAILESILTEAMYE 603 (678)
Q Consensus 589 Lr~iIE~il~~a~~~ 603 (678)
|++++......++.+
T Consensus 383 i~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
Confidence 999998887777754
No 15
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=2.4e-20 Score=193.95 Aligned_cols=235 Identities=20% Similarity=0.265 Sum_probs=165.4
Q ss_pred CHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHH
Q 005762 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (678)
Q Consensus 263 ~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LA 342 (678)
...++.+.|++.|+|++.+|+.|...+...... ......+. .......++||+||||||||++|
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~--~~~~~~g~--------------~~~~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVE--RARQKLGL--------------AHETPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH--HHHHHHTC--------------CSSCCCCEEEEEECTTSSHHHHH
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhH--HHHHHcCC--------------CCCCCCceEEEECCCCCCHHHHH
Confidence 456788889988999999999999887633211 11000000 00112468999999999999999
Q ss_pred HHHHHHh-------CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCC
Q 005762 343 KTLARHV-------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (678)
Q Consensus 343 ralA~~l-------~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~ 415 (678)
+++|+.+ ..+|+.+++.++. ..|+|.. ...+..+|..+ .++||||||||.+...... +.
T Consensus 85 ~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~~~-------~~~vl~iDEid~l~~~~~~-----~~ 150 (309)
T 3syl_A 85 LKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEVLKRA-------MGGVLFIDEAYYLYRPDNE-----RD 150 (309)
T ss_dssp HHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH-HHHHHHHHHHH-------TTSEEEEETGGGSCCCC--------C
T ss_pred HHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc-HHHHHHHHHhc-------CCCEEEEEChhhhccCCCc-----cc
Confidence 9999988 3489999999987 4577766 45556666544 4589999999998654211 12
Q ss_pred chhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCC
Q 005762 416 SGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVT 495 (678)
Q Consensus 416 s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~ 495 (678)
....+++.|+++|+.. ..+++||++++...++...
T Consensus 151 ~~~~~~~~Ll~~l~~~---------------------~~~~~~i~~~~~~~~~~~~------------------------ 185 (309)
T 3syl_A 151 YGQEAIEILLQVMENN---------------------RDDLVVILAGYADRMENFF------------------------ 185 (309)
T ss_dssp CTHHHHHHHHHHHHHC---------------------TTTCEEEEEECHHHHHHHH------------------------
T ss_pred ccHHHHHHHHHHHhcC---------------------CCCEEEEEeCChHHHHHHH------------------------
Confidence 2345999999999831 1355777777643211111
Q ss_pred chHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHH
Q 005762 496 DAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVI 575 (678)
Q Consensus 496 ~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~L 575 (678)
.+.|.|.+||+.++.|++++.+++.+|+... .++ ..+.+++++++.|
T Consensus 186 --------------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~----l~~---------~~~~~~~~~~~~l 232 (309)
T 3syl_A 186 --------------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHM----LDD---------QNYQMTPEAETAL 232 (309)
T ss_dssp --------------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHH----HHH---------TTCEECHHHHHHH
T ss_pred --------------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHH----HHH---------cCCCCCHHHHHHH
Confidence 1468999999999999999999999998752 111 2356999999999
Q ss_pred HHhhc-----CCCCCHHHHHHHHHHHHHHHHhcCC
Q 005762 576 AKKAT-----AKNTGARGLRAILESILTEAMYEIP 605 (678)
Q Consensus 576 a~~a~-----~~~~GAR~Lr~iIE~il~~a~~~~p 605 (678)
+++.. ....++|.|+++++.++..+...+.
T Consensus 233 ~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 233 RAYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88732 3345599999999999987665543
No 16
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.85 E-value=3.5e-21 Score=218.21 Aligned_cols=258 Identities=21% Similarity=0.273 Sum_probs=173.0
Q ss_pred CCHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHH
Q 005762 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (678)
Q Consensus 262 ~~p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~L 341 (678)
.+..++.+.|++.++|++.+++.+...+... .+. ...+..+++|+||||||||++
T Consensus 70 ~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~--~~~-----------------------~~~~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 70 LDLKEAGRLLDEEHHGLEKVKERILEYLAVQ--KLT-----------------------KSLKGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHH--HHS-----------------------SSCCSCEEEEESSSSSSHHHH
T ss_pred ccHHHHHHHHHHHhccHHHHHHHHHHHHHHH--Hhc-----------------------ccCCCCEEEEECCCCCCHHHH
Confidence 4455677788999999999999987665311 110 001346899999999999999
Q ss_pred HHHHHHHhCCCEEEEeccccccc--------cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccC
Q 005762 342 AKTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (678)
Q Consensus 342 AralA~~l~~~fv~id~s~l~~s--------gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~ 413 (678)
|++||+.++.+|+.+++..+... .|+|.. .+.+...|..+.. ..+||||||||++......
T Consensus 125 ar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a~~-----~~~vl~lDEid~l~~~~~~----- 193 (543)
T 3m6a_A 125 AKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKAGK-----LNPVFLLDEIDKMSSDFRG----- 193 (543)
T ss_dssp HHHHHHHHTCEEEEECCCC---------------------CHHHHHHTTCS-----SSEEEEEEESSSCC----------
T ss_pred HHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHhhc-----cCCEEEEhhhhhhhhhhcc-----
Confidence 99999999999999999875431 344444 2333444444322 4469999999999876321
Q ss_pred CCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccC
Q 005762 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (678)
Q Consensus 414 d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~ 493 (678)
+.++.||++||... .......+....++..+++||+|+|..+
T Consensus 194 -----~~~~~LL~~ld~~~------~~~~~~~~~~~~~~~~~v~iI~ttN~~~--------------------------- 235 (543)
T 3m6a_A 194 -----DPSSAMLEVLDPEQ------NSSFSDHYIEETFDLSKVLFIATANNLA--------------------------- 235 (543)
T ss_dssp ---------CCGGGTCTTT------TTBCCCSSSCCCCBCSSCEEEEECSSTT---------------------------
T ss_pred -----CHHHHHHHHHhhhh------cceeecccCCeeecccceEEEeccCccc---------------------------
Confidence 26788999998321 1122223334456778899999887431
Q ss_pred CCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHH
Q 005762 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALR 573 (678)
Q Consensus 494 ~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~ 573 (678)
.+.|+|++||+ ++.|++++.+++.+|+... +.+++.+........+.++++++.
T Consensus 236 ----------------------~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~---l~~~~~~~~~~~~~~i~i~~~~l~ 289 (543)
T 3m6a_A 236 ----------------------TIPGPLRDRME-IINIAGYTEIEKLEIVKDH---LLPKQIKEHGLKKSNLQLRDQAIL 289 (543)
T ss_dssp ----------------------TSCHHHHHHEE-EEECCCCCHHHHHHHHHHT---HHHHHHHHTTCCGGGCEECHHHHH
T ss_pred ----------------------cCCHHHHhhcc-eeeeCCCCHHHHHHHHHHH---HHHHHHHHcCCCcccccCCHHHHH
Confidence 27789999995 6899999999999999864 556655555444457889999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccccC
Q 005762 574 VIAKKATAKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEESVG 625 (678)
Q Consensus 574 ~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~v~ 625 (678)
.|++. |....|+|.|++.|++++..+...+.... ...+.|+.+++.
T Consensus 290 ~l~~~-~~~~~~vR~L~~~i~~~~~~aa~~~~~~~-----~~~~~It~~~l~ 335 (543)
T 3m6a_A 290 DIIRY-YTREAGVRSLERQLAAICRKAAKAIVAEE-----RKRITVTEKNLQ 335 (543)
T ss_dssp HHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHTTC-----CSCCEECTTTTH
T ss_pred HHHHh-CChhhchhHHHHHHHHHHHHHHHHHHhcC-----CcceecCHHHHH
Confidence 99883 66678999999999999998876654331 134555555543
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.1e-19 Score=189.34 Aligned_cols=221 Identities=22% Similarity=0.322 Sum_probs=163.4
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-CCC
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV-NVP 352 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l-~~~ 352 (678)
.|+|++.+|+.|.+++....+ +..... ....++.++||+||||||||++|+++|+.+ +.+
T Consensus 13 di~G~~~~k~~l~~~v~~p~~---~~~~~~----------------~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 73 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIK---FPHLFT----------------GKRTPWRGILLFGPPGTGKSYLAKAVATEANNST 73 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHH---CGGGSC----------------TTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCE
T ss_pred HhcCHHHHHHHHHHHHHHHHh---CHHHHh----------------CCCCCCceEEEECCCCccHHHHHHHHHHHcCCCc
Confidence 389999999999998864322 111110 111245799999999999999999999999 889
Q ss_pred EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce
Q 005762 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (678)
Q Consensus 353 fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~ 432 (678)
|+.+++.++. ..|+|.. +..+..+|..+.. ..++||||||||.+...+... .......+++.||..|++..
T Consensus 74 ~~~i~~~~l~-~~~~g~~-~~~~~~lf~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 74 FFSISSSDLV-SKWLGES-EKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp EEEEECCSSC-CSSCCSC-HHHHHHHHHHHHH----TSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSS
T ss_pred EEEEEhHHHH-hhhhhHH-HHHHHHHHHHHHh----cCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhccc
Confidence 9999999988 4588887 7778888876543 477899999999998764332 12223468888999998632
Q ss_pred eecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhh
Q 005762 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (678)
Q Consensus 433 v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edL 512 (678)
. ...++++|+++|..+
T Consensus 145 ~------------------~~~~v~vI~atn~~~---------------------------------------------- 160 (322)
T 1xwi_A 145 V------------------DNDGILVLGATNIPW---------------------------------------------- 160 (322)
T ss_dssp S------------------CCTTEEEEEEESCTT----------------------------------------------
T ss_pred c------------------cCCCEEEEEecCCcc----------------------------------------------
Confidence 1 123456666665321
Q ss_pred hhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHH
Q 005762 513 IAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (678)
Q Consensus 513 i~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~i 592 (678)
.+.+.|++||+..+.++.++.++..+|+... + ....+.+++..++.|++.+ .++..+.|+.+
T Consensus 161 ---~ld~al~rRf~~~i~i~~P~~~~r~~il~~~-----------l--~~~~~~l~~~~l~~la~~t--~G~sgadl~~l 222 (322)
T 1xwi_A 161 ---VLDSAIRRRFEKRIYIPLPEPHARAAMFKLH-----------L--GTTQNSLTEADFRELGRKT--DGYSGADISII 222 (322)
T ss_dssp ---TSCHHHHHTCCEEEECCCCCHHHHHHHHHHH-----------H--TTCCBCCCHHHHHHHHHTC--TTCCHHHHHHH
T ss_pred ---cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHH-----------H--hcCCCCCCHHHHHHHHHHc--CCCCHHHHHHH
Confidence 1567788899999999999999999998742 1 1334457899999999975 47778899999
Q ss_pred HHHHHHHHHhcC
Q 005762 593 LESILTEAMYEI 604 (678)
Q Consensus 593 IE~il~~a~~~~ 604 (678)
+...+..++.+.
T Consensus 223 ~~~A~~~a~r~~ 234 (322)
T 1xwi_A 223 VRDALMQPVRKV 234 (322)
T ss_dssp HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.82 E-value=1.3e-19 Score=191.52 Aligned_cols=220 Identities=22% Similarity=0.321 Sum_probs=161.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|++.+|+.|.+++....+ ..... .....++.++||+||||||||++|+++|+.++.+|+
T Consensus 20 i~G~~~~~~~l~~~i~~~~~---~~~~~----------------~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 80 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVK---FPHLF----------------KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF 80 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHH---CGGGC----------------CTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEE
T ss_pred hcChHHHHHHHHHHHHHHHh---CHHHH----------------hcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEE
Confidence 89999999999998864321 11110 011224578999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++++++. ..|+|.. +..+..+|..+.. ..++||||||||.+...+... .......+++.|+..|++...
T Consensus 81 ~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~- 150 (322)
T 3eie_A 81 SVSSSDLV-SKWMGES-EKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGN- 150 (322)
T ss_dssp EEEHHHHH-TTTGGGH-HHHHHHHHHHHHH----TSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGT-
T ss_pred EEchHHHh-hcccchH-HHHHHHHHHHHHh----cCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccc-
Confidence 99999987 3577876 6778888876543 377899999999998764332 122335688999999985321
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++++|+++|..+
T Consensus 151 -----------------~~~~v~vi~atn~~~------------------------------------------------ 165 (322)
T 3eie_A 151 -----------------DSQGVLVLGATNIPW------------------------------------------------ 165 (322)
T ss_dssp -----------------SCCCEEEEEEESCGG------------------------------------------------
T ss_pred -----------------cCCceEEEEecCChh------------------------------------------------
Confidence 112456666655321
Q ss_pred hcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005762 515 YGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (678)
Q Consensus 515 ~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE 594 (678)
.+.|.|++||+..+.+..++.++..+|++.. + .+..+.++++.++.|++.+ .++..+.|+.++.
T Consensus 166 -~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~-----------~--~~~~~~~~~~~l~~la~~t--~g~sg~di~~l~~ 229 (322)
T 3eie_A 166 -QLDSAIRRRFERRIYIPLPDLAARTTMFEIN-----------V--GDTPCVLTKEDYRTLGAMT--EGYSGSDIAVVVK 229 (322)
T ss_dssp -GSCHHHHHHCCEEEECCCCCHHHHHHHHHHH-----------H--TTCCCCCCHHHHHHHHHTT--TTCCHHHHHHHHH
T ss_pred -hCCHHHHcccCeEEEeCCCCHHHHHHHHHHH-----------h--ccCCCCCCHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 1567788899999999999999999998742 1 2344567899999999975 4677899999999
Q ss_pred HHHHHHHhcC
Q 005762 595 SILTEAMYEI 604 (678)
Q Consensus 595 ~il~~a~~~~ 604 (678)
.....++.+.
T Consensus 230 ~a~~~a~r~~ 239 (322)
T 3eie_A 230 DALMQPIRKI 239 (322)
T ss_dssp HHTTHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.81 E-value=4.6e-19 Score=190.43 Aligned_cols=221 Identities=22% Similarity=0.315 Sum_probs=157.6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|+|++.+|+.|.+++....+ ...... ....++.++||+||||||||++|+++|+.++.+|
T Consensus 52 di~G~~~~~~~l~~~v~~~~~---~~~~~~----------------~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVK---FPHLFK----------------GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHH---CGGGGC----------------SSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred HhCCHHHHHHHHHHHHHHHHh---CHHHHh----------------cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 389999999999998864321 111100 0112457899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.+++.++.. .|+|.. +..+..+|..+.. ..++||||||||.+...+... .......+++.||..|++...
T Consensus 113 ~~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 113 FSVSSSDLVS-KWMGES-EKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp EEEEHHHHHS-CC---C-HHHHHHHHHHHHH----TSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC-
T ss_pred EEeeHHHHhh-hhcchH-HHHHHHHHHHHHH----cCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccc
Confidence 9999999874 577876 6777777766532 467899999999998764322 122234578899999985211
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
...+++||+++|..+
T Consensus 184 ------------------~~~~v~vI~atn~~~----------------------------------------------- 198 (355)
T 2qp9_X 184 ------------------DSQGVLVLGATNIPW----------------------------------------------- 198 (355)
T ss_dssp --------------------CCEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------cCCCeEEEeecCCcc-----------------------------------------------
Confidence 123466776665321
Q ss_pred hhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005762 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (678)
Q Consensus 514 ~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iI 593 (678)
.+.|.+++||+..+.++.++.++..+|+... + ....+.+++..++.|++.+ .++..+.|+.++
T Consensus 199 --~ld~al~rRf~~~i~i~~P~~~~r~~il~~~-----------l--~~~~~~~~~~~l~~la~~t--~G~sg~dl~~l~ 261 (355)
T 2qp9_X 199 --QLDSAIRRRFERRIYIPLPDLAARTTMFEIN-----------V--GDTPSVLTKEDYRTLGAMT--EGYSGSDIAVVV 261 (355)
T ss_dssp --GSCHHHHHTCCEEEECCCCCHHHHHHHHHHH-----------H--TTSCBCCCHHHHHHHHHHT--TTCCHHHHHHHH
T ss_pred --cCCHHHHcccCEEEEeCCcCHHHHHHHHHHH-----------H--hhCCCCCCHHHHHHHHHHc--CCCCHHHHHHHH
Confidence 1567778899999999999999999998742 1 1334457899999999975 467789999999
Q ss_pred HHHHHHHHhcC
Q 005762 594 ESILTEAMYEI 604 (678)
Q Consensus 594 E~il~~a~~~~ 604 (678)
..++..++.+.
T Consensus 262 ~~A~~~a~~~~ 272 (355)
T 2qp9_X 262 KDALMQPIRKI 272 (355)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888653
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=187.21 Aligned_cols=223 Identities=24% Similarity=0.318 Sum_probs=152.7
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|+|++.+++.|...+...... .. ....+..+..++||+||||||||++|++||+.++.+|
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~---~~----------------~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~ 176 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLR---PE----------------LFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF 176 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC---TT----------------TSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred HhCCHHHHHHHHHHHHHHhccC---HH----------------HhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE
Confidence 3899999999999888633211 00 0111223458999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.++|+++.. .|+|.. +..+..+|..+.. ..++||||||||.+...+.. +.......+++.|+..|++...
T Consensus 177 ~~v~~~~l~~-~~~g~~-~~~~~~~~~~a~~----~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 177 FNISAASLTS-KYVGEG-EKLVRALFAVARE----LQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp EEECSCCC--------C-HHHHHHHHHHHHH----SSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-
T ss_pred EEeeHHHhhc-cccchH-HHHHHHHHHHHHh----cCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhcccc
Confidence 9999999884 577776 5667777765543 36789999999999765332 1122335688899999985322
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
. ...+++||+++|..+
T Consensus 248 ~-----------------~~~~v~vI~atn~~~----------------------------------------------- 263 (389)
T 3vfd_A 248 A-----------------GDDRVLVMGATNRPQ----------------------------------------------- 263 (389)
T ss_dssp ---------------------CEEEEEEESCGG-----------------------------------------------
T ss_pred c-----------------CCCCEEEEEecCCch-----------------------------------------------
Confidence 1 123466777665321
Q ss_pred hhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005762 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (678)
Q Consensus 514 ~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iI 593 (678)
.+.+.+++||+.++.|..++.+++.+|+... +. .....+++++++.|++.. .++..+.|..++
T Consensus 264 --~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~-----------~~--~~~~~l~~~~~~~la~~~--~g~~~~~l~~L~ 326 (389)
T 3vfd_A 264 --ELDEAVLRRFIKRVYVSLPNEETRLLLLKNL-----------LC--KQGSPLTQKELAQLARMT--DGYSGSDLTALA 326 (389)
T ss_dssp --GCCHHHHTTCCEEEECCCCCHHHHHHHHHHH-----------HT--TSCCCSCHHHHHHHHHHT--TTCCHHHHHHHH
T ss_pred --hcCHHHHcCcceEEEcCCcCHHHHHHHHHHH-----------HH--hcCCCCCHHHHHHHHHHc--CCCCHHHHHHHH
Confidence 1567788899988999999999999998741 11 234558999999999875 366778899988
Q ss_pred HHHHHHHHhcCC
Q 005762 594 ESILTEAMYEIP 605 (678)
Q Consensus 594 E~il~~a~~~~p 605 (678)
......++.++.
T Consensus 327 ~~a~~~~~rel~ 338 (389)
T 3vfd_A 327 KDAALGPIRELK 338 (389)
T ss_dssp HHHTTHHHHTSC
T ss_pred HHHHHHHHHhhh
Confidence 888777777654
No 21
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.78 E-value=2.1e-18 Score=180.80 Aligned_cols=219 Identities=23% Similarity=0.301 Sum_probs=150.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHH--HHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRI--YHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl--~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
|+|++.+|+.|.+++....+.. .... + ..++.++||+||||||||++|++||+.++.+
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~~-----~---------------~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~ 76 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLKF-----G---------------MTPSKGVLFYGPPGCGKTLLAKAIANECQAN 76 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHH-----C---------------CCCCSEEEEECSSSSSHHHHHHHHHHHTTCE
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHc-----C---------------CCCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 8999999999999886432110 0000 0 0134789999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce
Q 005762 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (678)
Q Consensus 353 fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~ 432 (678)
|+.+++.++.. .|+|.. +..+..+|..+.. ..++||||||||.+...+.............+++.||..|++..
T Consensus 77 ~i~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 77 FISIKGPELLT-MWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp EEEECHHHHHH-HHHTTC-TTHHHHHHHHHHH----TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred EEEEEhHHHHh-hhcCch-HHHHHHHHHHHHh----cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 99999998873 477776 5667777776543 36789999999999887543221111222458899999998521
Q ss_pred eecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhh
Q 005762 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (678)
Q Consensus 433 v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edL 512 (678)
...++++|+++|..+
T Consensus 151 -------------------~~~~v~vi~atn~~~---------------------------------------------- 165 (301)
T 3cf0_A 151 -------------------TKKNVFIIGATNRPD---------------------------------------------- 165 (301)
T ss_dssp -------------------TTSSEEEEEEESCGG----------------------------------------------
T ss_pred -------------------CCCCEEEEEecCCcc----------------------------------------------
Confidence 123456676665321
Q ss_pred hhhcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHH
Q 005762 513 IAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (678)
Q Consensus 513 i~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr 590 (678)
.+.|.++. ||+..+.++.++.++..+|++.. . ...+....+ .++.|+... .++..+.|+
T Consensus 166 ---~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~----l-------~~~~~~~~~---~~~~la~~~--~g~sg~dl~ 226 (301)
T 3cf0_A 166 ---IIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN----L-------RKSPVAKDV---DLEFLAKMT--NGFSGADLT 226 (301)
T ss_dssp ---GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH----H-------TTSCBCSSC---CHHHHHHTC--SSCCHHHHH
T ss_pred ---ccChHHhcCCccceEEecCCcCHHHHHHHHHHH----H-------ccCCCCccc---hHHHHHHHc--CCCCHHHHH
Confidence 14455665 99999999999999999987642 1 111221122 245666653 355566999
Q ss_pred HHHHHHHHHHHhc
Q 005762 591 AILESILTEAMYE 603 (678)
Q Consensus 591 ~iIE~il~~a~~~ 603 (678)
+++++++..++.+
T Consensus 227 ~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 227 EICQRACKLAIRE 239 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877754
No 22
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.78 E-value=1.4e-18 Score=177.60 Aligned_cols=220 Identities=20% Similarity=0.293 Sum_probs=143.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC---C
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---V 351 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---~ 351 (678)
++|++.+++.+...+... .....++||+||||||||++|++|++.+. .
T Consensus 8 ~ig~~~~~~~~~~~~~~~-----------------------------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~ 58 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHL-----------------------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQG 58 (265)
T ss_dssp --CCCHHHHHHHHHHHHH-----------------------------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTS
T ss_pred ceeCCHHHHHHHHHHHHH-----------------------------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCC
Confidence 689999998887766421 01236899999999999999999999884 6
Q ss_pred CEEEEeccccccc----cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHH
Q 005762 352 PFVIADATTLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (678)
Q Consensus 352 ~fv~id~s~l~~s----gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~ 427 (678)
+|+.++|+.+... .++|.. ...+........+.+..+.+++|||||||.+... +|+.|+++
T Consensus 59 ~~~~v~~~~~~~~~~~~~l~g~~-~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~~Ll~~ 123 (265)
T 2bjv_A 59 PFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQEKLLRV 123 (265)
T ss_dssp CEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHHHHHHH
T ss_pred CeEEEecCCCChhHHHHHhcCCc-ccccccccccccchhhhcCCcEEEEechHhcCHH--------------HHHHHHHH
Confidence 8999999987421 011111 0001111111223344566789999999999876 89999999
Q ss_pred HhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhc
Q 005762 428 LEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (678)
Q Consensus 428 LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v 507 (678)
|+...+. ..|.. .....++.+|++++.. +.+.+.
T Consensus 124 l~~~~~~--~~g~~--------~~~~~~~~iI~atn~~-~~~~~~----------------------------------- 157 (265)
T 2bjv_A 124 IEYGELE--RVGGS--------QPLQVNVRLVCATNAD-LPAMVN----------------------------------- 157 (265)
T ss_dssp HHHCEEC--CCCC----------CEECCCEEEEEESSC-HHHHHH-----------------------------------
T ss_pred HHhCCee--cCCCc--------ccccCCeEEEEecCcC-HHHHHH-----------------------------------
Confidence 9833221 11110 1123456778777642 222211
Q ss_pred chhhhhhhcCCcccccccce-EEecCCcCH--HHHHHHHhchHHHHHHHHHHHHhcCCcee--eeCHHHHHHHHHhhcCC
Q 005762 508 ESSDLIAYGLIPEFVGRFPI-LVSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKL--HFTEKALRVIAKKATAK 582 (678)
Q Consensus 508 ~~edLi~~g~~Pefl~R~~~-iv~f~~Lse--eeL~~Il~~~ln~L~~q~~~~~~~~gv~l--~~t~eal~~La~~a~~~ 582 (678)
...|.++|++||+. .+.+++|++ +++..++.. +++++.+.. +..+ .+++++++.|..+.|
T Consensus 158 ------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~----~l~~~~~~~---~~~~~~~~~~~a~~~L~~~~~-- 222 (265)
T 2bjv_A 158 ------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEY----FAIQMCREI---KLPLFPGFTERARETLLNYRW-- 222 (265)
T ss_dssp ------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHH----HHHHHHHHT---TCSSCCCBCHHHHHHHHHSCC--
T ss_pred ------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHH----HHHHHHHHh---CCCcccCcCHHHHHHHHhCCC--
Confidence 12378899999964 689999987 788877764 333333322 3333 699999999998876
Q ss_pred CCCHHHHHHHHHHHHHH
Q 005762 583 NTGARGLRAILESILTE 599 (678)
Q Consensus 583 ~~GAR~Lr~iIE~il~~ 599 (678)
..+.|+|+++++.++..
T Consensus 223 ~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 223 PGNIRELKNVVERSVYR 239 (265)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 67789999999998754
No 23
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=1.2e-18 Score=204.51 Aligned_cols=218 Identities=23% Similarity=0.337 Sum_probs=160.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|.|++++|+.|.+.|... +.+......+|. .++.+|||+||||||||+||+++|+.++.+|
T Consensus 205 dIgGl~~~~~~l~e~v~~p---l~~p~~f~~~g~---------------~~p~GILL~GPPGTGKT~LAraiA~elg~~~ 266 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELP---LRHPALFKAIGV---------------KPPRGILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHH---HHCCGGGTSCCC---------------CCCCEEEEECCTTSCHHHHHHHHHTTTTCEE
T ss_pred hhcCHHHHHHHHHHHHHHH---ccCHHHHhhcCC---------------CCCCeEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3899999999999988633 223332222222 2468999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.+++.++. ..|+|+. +..++.+|..+... .++||||||||.|.+.+++.. ......+.+.||..|++..
T Consensus 267 ~~v~~~~l~-sk~~ges-e~~lr~lF~~A~~~----~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~- 336 (806)
T 3cf2_A 267 FLINGPEIM-SKLAGES-ESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLK- 336 (806)
T ss_dssp EEEEHHHHH-SSCTTHH-HHHHHHHHHHHTTS----CSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCC-
T ss_pred EEEEhHHhh-cccchHH-HHHHHHHHHHHHHc----CCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhccc-
Confidence 999999998 4688988 88899999887653 789999999999998765432 2233568899999998631
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
...++++|+++|..+
T Consensus 337 ------------------~~~~V~VIaaTN~~d----------------------------------------------- 351 (806)
T 3cf2_A 337 ------------------QRAHVIVMAATNRPN----------------------------------------------- 351 (806)
T ss_dssp ------------------GGGCEEEEEECSSTT-----------------------------------------------
T ss_pred ------------------ccCCEEEEEecCChh-----------------------------------------------
Confidence 123456666666321
Q ss_pred hhcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 514 AYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 514 ~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.|.|+. ||+..|.+..+++++..+|++.. ..+..+. ++--+..||+.+ .++....|..
T Consensus 352 --~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~-------------l~~~~~~-~dvdl~~lA~~T--~GfsgaDL~~ 413 (806)
T 3cf2_A 352 --SIDPALRRFGRFDREVDIGIPDATGRLEILQIH-------------TKNMKLA-DDVDLEQVANET--HGHVGADLAA 413 (806)
T ss_dssp --TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHT-------------CSSSEEC-TTCCHHHHHHHC--CSCCHHHHHH
T ss_pred --hcCHHHhCCcccceEEecCCCCHHHHHHHHHHH-------------hcCCCCC-cccCHHHHHHhc--CCCCHHHHHH
Confidence 15666665 99999999999999999998742 1233222 223367788765 4677788998
Q ss_pred HHHHHHHHHHh
Q 005762 592 ILESILTEAMY 602 (678)
Q Consensus 592 iIE~il~~a~~ 602 (678)
++......++.
T Consensus 414 Lv~eA~~~A~~ 424 (806)
T 3cf2_A 414 LCSEAALQAIR 424 (806)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887666654
No 24
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=1.6e-19 Score=212.01 Aligned_cols=222 Identities=23% Similarity=0.286 Sum_probs=137.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|.|++++|+.|.++|....+ +....... -..++.++||+||||||||++|+++|.+++.+|+
T Consensus 479 iggl~~~k~~l~e~v~~p~~---~p~~f~~~---------------g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~ 540 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVE---HPDKFLKF---------------GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTT---CSGGGSSS---------------CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEE
T ss_pred hCCHHHHHHHHHHHHHhhhh---CHHHHHhc---------------CCCCCceEEEecCCCCCchHHHHHHHHHhCCceE
Confidence 78999999999888752211 01100000 1124688999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++++++. +.|+|++ ++.++.+|..+.. ..++||||||||.+...++....+.+.....+.+.||..|||..-
T Consensus 541 ~v~~~~l~-s~~vGes-e~~vr~lF~~Ar~----~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~- 613 (806)
T 3cf2_A 541 SIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST- 613 (806)
T ss_dssp ECCHHHHH-TTTCSSC-HHHHHHHHHHHHT----TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS-
T ss_pred Eeccchhh-ccccchH-HHHHHHHHHHHHH----cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC-
Confidence 99999998 5699999 8899999988754 378999999999999876543222223335689999999997321
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
..++++|+++|..+
T Consensus 614 ------------------~~~V~vi~aTN~p~------------------------------------------------ 627 (806)
T 3cf2_A 614 ------------------KKNVFIIGATNRPD------------------------------------------------ 627 (806)
T ss_dssp ------------------SSSEEEECC-CCSS------------------------------------------------
T ss_pred ------------------CCCEEEEEeCCCch------------------------------------------------
Confidence 13455666655332
Q ss_pred hcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHH
Q 005762 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (678)
Q Consensus 515 ~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~i 592 (678)
.+.|+|+. |||..|.++.++.++..+|++..+ .+..+. .+--++.|++.. .++....|.++
T Consensus 628 -~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l-------------~~~~~~-~~~dl~~la~~t--~g~SGadi~~l 690 (806)
T 3cf2_A 628 -IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL-------------RKSPVA-KDVDLEFLAKMT--NGFSGADLTEI 690 (806)
T ss_dssp -SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS-------------SCC--C-CC------------------CHHHH
T ss_pred -hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh-------------cCCCCC-CCCCHHHHHHhC--CCCCHHHHHHH
Confidence 15556665 999999999999999999988531 122211 112256677754 35556689998
Q ss_pred HHHHHHHHHhcC
Q 005762 593 LESILTEAMYEI 604 (678)
Q Consensus 593 IE~il~~a~~~~ 604 (678)
+......++.+.
T Consensus 691 ~~~A~~~a~r~~ 702 (806)
T 3cf2_A 691 CQRACKLAIRES 702 (806)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877777653
No 25
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.78 E-value=2.7e-18 Score=189.89 Aligned_cols=220 Identities=21% Similarity=0.325 Sum_probs=154.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-CCCE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV-NVPF 353 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l-~~~f 353 (678)
|+|++.+|+.|.+++....+. ... + .....++.++||+||||||||++|++||+.+ +.+|
T Consensus 136 i~G~~~~k~~l~~~v~~p~~~---~~~-------------~---~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~ 196 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPIKF---PHL-------------F---TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF 196 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHHHC---TTT-------------T---SGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE
T ss_pred hcCHHHHHHHHHHHHHHHhhC---HHH-------------h---hccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE
Confidence 899999999999888533211 100 0 0111245899999999999999999999999 8899
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.++++++.. .|+|.. +..+..+|..+.. ..++||||||||.+...+... .......+++.||..|++...
T Consensus 197 ~~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 197 FSISSSDLVS-KWLGES-EKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp EEECCC----------C-CCTHHHHHHHHHH----SCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSC
T ss_pred EEEeHHHHHh-hhcchH-HHHHHHHHHHHHH----cCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCccc
Confidence 9999999874 577776 5667777765532 467899999999997754332 122234588889998885211
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
...+++||+++|..+
T Consensus 268 ------------------~~~~v~vI~atn~~~----------------------------------------------- 282 (444)
T 2zan_A 268 ------------------DNDGILVLGATNIPW----------------------------------------------- 282 (444)
T ss_dssp ------------------CCSSCEEEEEESCGG-----------------------------------------------
T ss_pred ------------------CCCCEEEEecCCCcc-----------------------------------------------
Confidence 124567777666321
Q ss_pred hhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005762 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (678)
Q Consensus 514 ~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iI 593 (678)
.+.|.|++||+.++.++.++.++...|+... + ....+.+++..++.|++.+ .++..+.|+.++
T Consensus 283 --~ld~al~rRf~~~i~i~~P~~~~r~~il~~~-----------l--~~~~~~l~~~~l~~la~~t--~G~sgadl~~l~ 345 (444)
T 2zan_A 283 --VLDSAIRRRFEKRIYIPLPEAHARAAMFRLH-----------L--GSTQNSLTEADFQELGRKT--DGYSGADISIIV 345 (444)
T ss_dssp --GSCHHHHTTCCEEEECCCCCHHHHHHHHHHH-----------H--TTSCEECCHHHHHHHHHHT--TTCCHHHHHHHH
T ss_pred --ccCHHHHhhcceEEEeCCcCHHHHHHHHHHH-----------H--hcCCCCCCHHHHHHHHHHc--CCCCHHHHHHHH
Confidence 1667888899999999999999999988742 1 2344567899999999975 477789999999
Q ss_pred HHHHHHHHhcC
Q 005762 594 ESILTEAMYEI 604 (678)
Q Consensus 594 E~il~~a~~~~ 604 (678)
...+..++.++
T Consensus 346 ~~a~~~a~r~~ 356 (444)
T 2zan_A 346 RDALMQPVRKV 356 (444)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887654
No 26
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.77 E-value=1.4e-18 Score=183.02 Aligned_cols=222 Identities=18% Similarity=0.280 Sum_probs=148.1
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l--- 349 (678)
+.++|++.+.+.+...+... .....++||+||||||||++|++|++.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------------------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~ 52 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------------------------APSDATVLIHGDSGTGKELVARALHACSARS 52 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------------------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCS
T ss_pred CCcEECCHHHHHHHHHHHHH-----------------------------hCCCCcEEEECCCCchHHHHHHHHHHhCccc
Confidence 34789999888887766421 1124789999999999999999999976
Q ss_pred CCCEEEEeccccccc----cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHH
Q 005762 350 NVPFVIADATTLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (678)
Q Consensus 350 ~~~fv~id~s~l~~s----gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL 425 (678)
+.||+.++|+.+... .++|+.. +.+........+.+..+.+++||||||+.+... +|..|+
T Consensus 53 ~~~~v~v~~~~~~~~l~~~~lfg~~~-g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~--------------~q~~Ll 117 (304)
T 1ojl_A 53 DRPLVTLNCAALNESLLESELFGHEK-GAFTGADKRREGRFVEADGGTLFLDEIGDISPL--------------MQVRLL 117 (304)
T ss_dssp SSCCCEEECSSCCHHHHHHHHTCCCS-SCCC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------HHHHHH
T ss_pred CCCeEEEeCCCCChHHHHHHhcCccc-cccCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------HHHHHH
Confidence 579999999976521 1112110 000001111223445567799999999999876 899999
Q ss_pred HHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHh
Q 005762 426 KMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLE 505 (678)
Q Consensus 426 ~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~ 505 (678)
.+|+...+. ..|.... ...++.+|++++.. +++.+..
T Consensus 118 ~~l~~~~~~--~~g~~~~--------~~~~~riI~atn~~-l~~~v~~-------------------------------- 154 (304)
T 1ojl_A 118 RAIQEREVQ--RVGSNQT--------ISVDVRLIAATHRD-LAEEVSA-------------------------------- 154 (304)
T ss_dssp HHHHSSBCC--BTTBCCC--------CBCCCEEEEEESSC-HHHHHHH--------------------------------
T ss_pred HHHhcCEee--ecCCccc--------ccCCeEEEEecCcc-HHHHHHh--------------------------------
Confidence 999943321 1121111 12356677776643 4433322
Q ss_pred hcchhhhhhhcCCcccccccce-EEecCCcC--HHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCC
Q 005762 506 SVESSDLIAYGLIPEFVGRFPI-LVSLTALT--EDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAK 582 (678)
Q Consensus 506 ~v~~edLi~~g~~Pefl~R~~~-iv~f~~Ls--eeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~ 582 (678)
..|.++|..||.. .+.+++|. .+|+..++.. +++++...+.. ....|++++++.|..+.|
T Consensus 155 ---------g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~----~l~~~~~~~~~--~~~~~s~~a~~~L~~~~w-- 217 (304)
T 1ojl_A 155 ---------GRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADH----FLRRFAERNRK--VVKGFTPQAMDLLIHYDW-- 217 (304)
T ss_dssp ---------TSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHH----HHHHHHHHTTC--CCCCBCHHHHHHHHHCCC--
T ss_pred ---------CCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHH----HHHHHHHHhcc--CccCCCHHHHHHHHcCCC--
Confidence 2278889999965 58899999 5788888775 34444443322 235699999999999876
Q ss_pred CCCHHHHHHHHHHHHH
Q 005762 583 NTGARGLRAILESILT 598 (678)
Q Consensus 583 ~~GAR~Lr~iIE~il~ 598 (678)
..+.|+|++++++++.
T Consensus 218 pGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 218 PGNIRELENAIERAVV 233 (304)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6678999999999875
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=179.57 Aligned_cols=223 Identities=19% Similarity=0.289 Sum_probs=157.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|+|++.+++.|.+.+....+. ... .......+.++||+||||||||++|++||+.++.+|
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~---~~~----------------~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 145 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLR---PDI----------------FTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF 145 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC---TTT----------------SCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred HhCChHHHHHHHHHHHHHHhhC---hHh----------------HhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 4899999999999988633211 100 011123457999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.++++++.. .|+|.. +..+..+|..+. ...++||||||||.+...+.. +.+.....+++.||..|++...
T Consensus 146 ~~i~~~~l~~-~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 146 FSISASSLTS-KWVGEG-EKMVRALFAVAR----CQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp EEEEGGGGCC-SSTTHH-HHHHHHHHHHHH----HTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC---
T ss_pred EEEehHHhhc-cccchH-HHHHHHHHHHHH----hcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccc
Confidence 9999999874 477765 566666765543 246789999999999775432 1223345688899999985321
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
. ...+++||+++|..+
T Consensus 217 ~-----------------~~~~v~vI~atn~~~----------------------------------------------- 232 (357)
T 3d8b_A 217 S-----------------SEDRILVVGATNRPQ----------------------------------------------- 232 (357)
T ss_dssp ------------------CCCCEEEEEEESCGG-----------------------------------------------
T ss_pred c-----------------CCCCEEEEEecCChh-----------------------------------------------
Confidence 1 123566776665321
Q ss_pred hhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005762 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (678)
Q Consensus 514 ~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iI 593 (678)
.+.+.+++||+..+.+..++.++..+|+... . . ...+.++++.++.|++.+ .++..+.|+.++
T Consensus 233 --~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~----~-------~--~~~~~l~~~~l~~la~~t--~G~s~~dl~~l~ 295 (357)
T 3d8b_A 233 --EIDEAARRRLVKRLYIPLPEASARKQIVINL----M-------S--KEQCCLSEEEIEQIVQQS--DAFSGADMTQLC 295 (357)
T ss_dssp --GBCHHHHTTCCEEEECCCCCHHHHHHHHHHH----H-------H--TSCBCCCHHHHHHHHHHT--TTCCHHHHHHHH
T ss_pred --hCCHHHHhhCceEEEeCCcCHHHHHHHHHHH----H-------h--hcCCCccHHHHHHHHHHc--CCCCHHHHHHHH
Confidence 1556777899999999999999999988741 1 1 223458899999999975 466788999999
Q ss_pred HHHHHHHHhcCC
Q 005762 594 ESILTEAMYEIP 605 (678)
Q Consensus 594 E~il~~a~~~~p 605 (678)
......++.++.
T Consensus 296 ~~a~~~~ir~l~ 307 (357)
T 3d8b_A 296 REASLGPIRSLQ 307 (357)
T ss_dssp HHHHTHHHHHCC
T ss_pred HHHHHHHHHHhh
Confidence 988887777653
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=1.8e-17 Score=171.83 Aligned_cols=223 Identities=26% Similarity=0.343 Sum_probs=155.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|++.+++.|...+...... ... ...+..+..++||+||||||||++|+++|+.++.+|+
T Consensus 23 i~G~~~~~~~l~~~i~~~~~~---~~~----------------~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVR---PEL----------------FTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHC---GGG----------------SCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred hCChHHHHHHHHHHHHhhhhC---HHH----------------HhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 899999999999888633211 110 0112234579999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++++++.. .|+|.. +..+..+|..+. ...++||||||||.+...+... .......+++.||..+++....
T Consensus 84 ~i~~~~l~~-~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 84 NISAASLTS-KYVGDG-EKLVRALFAVAR----HMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp EEESTTTSS-SSCSCH-HHHHHHHHHHHH----HTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC--
T ss_pred EeeHHHHhh-cccchH-HHHHHHHHHHHH----HcCCcEEEeccHHHhccccccC---cchHHHHHHHHHHHHHhccccc
Confidence 999998874 466765 566666665543 3477899999999998764321 1222345788899999853221
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
....++++|++++..+
T Consensus 155 ----------------~~~~~v~vi~~tn~~~------------------------------------------------ 170 (297)
T 3b9p_A 155 ----------------PDGDRIVVLAATNRPQ------------------------------------------------ 170 (297)
T ss_dssp --------------------CEEEEEEESCGG------------------------------------------------
T ss_pred ----------------CCCCcEEEEeecCChh------------------------------------------------
Confidence 1123456666665321
Q ss_pred hcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005762 515 YGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (678)
Q Consensus 515 ~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE 594 (678)
.+.+.++.||+..+.++.++.++...|+... . . .....+++++++.|++.+ .++..+.|+.+++
T Consensus 171 -~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~----~-------~--~~~~~~~~~~~~~la~~~--~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 171 -ELDEAALRRFTKRVYVSLPDEQTRELLLNRL----L-------Q--KQGSPLDTEALRRLAKIT--DGYSGSDLTALAK 234 (297)
T ss_dssp -GBCHHHHHHCCEEEECCCCCHHHHHHHHHHH----H-------G--GGSCCSCHHHHHHHHHHT--TTCCHHHHHHHHH
T ss_pred -hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHH----H-------H--hcCCCCCHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 1556777899999999999999988887641 1 1 123357899999999975 4666789999999
Q ss_pred HHHHHHHhcCC
Q 005762 595 SILTEAMYEIP 605 (678)
Q Consensus 595 ~il~~a~~~~p 605 (678)
.....++.+..
T Consensus 235 ~a~~~a~r~~~ 245 (297)
T 3b9p_A 235 DAALEPIRELN 245 (297)
T ss_dssp HHTTHHHHTCC
T ss_pred HHHHHHHHHHh
Confidence 88877777653
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=2.6e-17 Score=169.37 Aligned_cols=218 Identities=27% Similarity=0.341 Sum_probs=143.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|++.+++.|...+.........- .. .+ ...+.++||+||||||||++|+++|+.++.+|+
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~-~~--~~---------------~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELF-EK--VG---------------IEPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHH-HH--HC---------------CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHH-Hh--cC---------------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 8999999999998886432210000 00 00 013478999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh---cc
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE---GT 431 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE---g~ 431 (678)
.+++.++.. .|.|.. ...+..+|..+.. ..++||||||||.+...+.....+. ....+..|+.+++ +.
T Consensus 81 ~v~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 81 RVVGSELVK-KFIGEG-ASLVKDIFKLAKE----KAPSIIFIDEIDAIAAKRTDALTGG---DREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp EEEGGGGCC-CSTTHH-HHHHHHHHHHHHH----TCSEEEEEETTHHHHBCCSSSCCGG---GGHHHHHHHHHHHHHHTT
T ss_pred EEehHHHHH-hccchH-HHHHHHHHHHHHH----cCCeEEEEECHHHhcccCccccCCc---cHHHHHHHHHHHHHhhCC
Confidence 999998874 466665 5566666655432 3678999999999987643322111 2235555555554 21
Q ss_pred eeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhh
Q 005762 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSD 511 (678)
Q Consensus 432 ~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~ed 511 (678)
. ...++++|+|++..+
T Consensus 152 ~-------------------~~~~~~vI~ttn~~~--------------------------------------------- 167 (285)
T 3h4m_A 152 D-------------------ARGDVKIIGATNRPD--------------------------------------------- 167 (285)
T ss_dssp C-------------------SSSSEEEEEECSCGG---------------------------------------------
T ss_pred C-------------------CCCCEEEEEeCCCch---------------------------------------------
Confidence 1 112456676665321
Q ss_pred hhhhcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHH
Q 005762 512 LIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGL 589 (678)
Q Consensus 512 Li~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~L 589 (678)
.+.+.++. ||+.++.+++++.++..+|+... +. ...+. .+..+..|+... .++..|.|
T Consensus 168 ----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~-----------~~--~~~~~-~~~~~~~l~~~~--~g~~~~~i 227 (285)
T 3h4m_A 168 ----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIH-----------TR--KMNLA-EDVNLEEIAKMT--EGCVGAEL 227 (285)
T ss_dssp ----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHH-----------HT--TSCBC-TTCCHHHHHHHC--TTCCHHHH
T ss_pred ----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHH-----------Hh--cCCCC-CcCCHHHHHHHc--CCCCHHHH
Confidence 13444555 99999999999999999998741 11 11111 223356677654 36678999
Q ss_pred HHHHHHHHHHHHhc
Q 005762 590 RAILESILTEAMYE 603 (678)
Q Consensus 590 r~iIE~il~~a~~~ 603 (678)
+.++..+...++.+
T Consensus 228 ~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 228 KAICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988888765
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=5.8e-17 Score=164.89 Aligned_cols=219 Identities=23% Similarity=0.289 Sum_probs=145.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|++.+|+.|...+.. +.+...-...+ ...+.+++|+||||||||++|++||+.++.+|+
T Consensus 14 i~G~~~~~~~l~~~~~~----~~~~~~~~~~~---------------~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 14 VAGCDEAKEEVAELVEY----LREPSRFQKLG---------------GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp SCSCHHHHHHTHHHHHH----HHCGGGC--------------------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred hcCcHHHHHHHHHHHHH----HhCHHHHHHcC---------------CCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 89999999999887641 11111100000 012467999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+++.++.. .|.|.. ...+..+|..+.. ..++||||||||.+...+.....+........++.||..|++..
T Consensus 75 ~i~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-- 146 (257)
T 1lv7_A 75 TISGSDFVE-MFVGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-- 146 (257)
T ss_dssp EECSCSSTT-SCCCCC-HHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC--
T ss_pred EEeHHHHHH-Hhhhhh-HHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc--
Confidence 999999874 466766 5667777776532 35689999999999876433211222223357788888888521
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++++|++++..+
T Consensus 147 -----------------~~~~~~vI~~tn~~~------------------------------------------------ 161 (257)
T 1lv7_A 147 -----------------GNEGIIVIAATNRPD------------------------------------------------ 161 (257)
T ss_dssp -----------------SSSCEEEEEEESCTT------------------------------------------------
T ss_pred -----------------cCCCEEEEEeeCCch------------------------------------------------
Confidence 122345666555321
Q ss_pred hcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHH-HHHHHHhhcCCCCCHHHHHH
Q 005762 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA-LRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 515 ~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ea-l~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.+.++. ||+..+.+..++.++..+|+... . + .. .+++++ +..++... .++..|+|++
T Consensus 162 -~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~----~----~-----~~--~l~~~~~~~~la~~~--~G~~~~dl~~ 223 (257)
T 1lv7_A 162 -VLDPALLRPGRFDRQVVVGLPDVRGREQILKVH----M----R-----RV--PLAPDIDAAIIARGT--PGFSGADLAN 223 (257)
T ss_dssp -TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH----H----T-----TS--CBCTTCCHHHHHHTC--TTCCHHHHHH
T ss_pred -hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHH----H----h-----cC--CCCccccHHHHHHHc--CCCCHHHHHH
Confidence 03344444 89999999999999998887642 1 1 11 233333 45566542 4568999999
Q ss_pred HHHHHHHHHHhc
Q 005762 592 ILESILTEAMYE 603 (678)
Q Consensus 592 iIE~il~~a~~~ 603 (678)
++++++..+..+
T Consensus 224 l~~~a~~~a~~~ 235 (257)
T 1lv7_A 224 LVNEAALFAARG 235 (257)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999988887754
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.74 E-value=3.5e-17 Score=172.64 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=145.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
++|++.+++.|...+..... .. ....++||+||||||||++|+++|+.++.+|+
T Consensus 31 iiG~~~~~~~l~~~l~~~~~----~~----------------------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKK----RN----------------------ECLDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHH----TT----------------------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred hCChHHHHHHHHHHHHHHHh----cC----------------------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 79999999999888753211 00 12368999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+++..+.. ...+...+.. .+.+++|||||||.+... .++.|++.|+...+.
T Consensus 85 ~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~~~ 136 (338)
T 3pfi_A 85 TTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYRLD 136 (338)
T ss_dssp EEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCC-
T ss_pred Eecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcCHH--------------HHHHHHHHHHhccch
Confidence 999987642 2334444433 236689999999999876 999999999954332
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
+-... ......+.++..+++||++++..+
T Consensus 137 ~~~~~---~~~~~~~~~~~~~~~~i~atn~~~------------------------------------------------ 165 (338)
T 3pfi_A 137 IIIGS---GPAAQTIKIDLPKFTLIGATTRAG------------------------------------------------ 165 (338)
T ss_dssp -----------CCCCCCCCCCCEEEEEESCGG------------------------------------------------
T ss_pred hhccc---CccccceecCCCCeEEEEeCCCcc------------------------------------------------
Confidence 11000 000111223333577777766311
Q ss_pred hcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005762 515 YGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (678)
Q Consensus 515 ~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE 594 (678)
.+.|.|++||+.++.|.+++.+++.+|+... .. . ..+.+++++++.|++. + ..+.|.+.++++
T Consensus 166 -~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~----~~-------~--~~~~~~~~~~~~l~~~-~--~G~~r~l~~~l~ 228 (338)
T 3pfi_A 166 -MLSNPLRDRFGMQFRLEFYKDSELALILQKA----AL-------K--LNKTCEEKAALEIAKR-S--RSTPRIALRLLK 228 (338)
T ss_dssp -GSCHHHHTTCSEEEECCCCCHHHHHHHHHHH----HH-------H--TTCEECHHHHHHHHHT-T--TTCHHHHHHHHH
T ss_pred -ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHH----HH-------h--cCCCCCHHHHHHHHHH-H--CcCHHHHHHHHH
Confidence 1677889999999999999999999888742 11 1 1256899999999994 3 667899999999
Q ss_pred HHHHHHH
Q 005762 595 SILTEAM 601 (678)
Q Consensus 595 ~il~~a~ 601 (678)
.++..+.
T Consensus 229 ~~~~~a~ 235 (338)
T 3pfi_A 229 RVRDFAD 235 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765554
No 32
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.74 E-value=3.2e-17 Score=182.89 Aligned_cols=218 Identities=26% Similarity=0.314 Sum_probs=145.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|++++|+.|.+.+.. ++ ....-...+ + ..+.++||+||||||||++|++||+.++.+|+
T Consensus 18 i~G~~~~~~~l~e~v~~-l~---~~~~~~~~g--------------~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~ 78 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEF-LK---DPSKFNRIG--------------A-RMPKGILLVGPPGTGKTLLARAVAGEANVPFF 78 (476)
T ss_dssp CCSCHHHHHHHHHHHHH-HH---CTHHHHTTT--------------C-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred hCCcHHHHHHHHHHHHH-hh---ChHHHhhcC--------------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 89999999999888752 21 110000000 0 12467999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.++++++.. .|+|.. ...++.+|..+.. ..++||||||||.+...+.....+.+...+.+++.||..|++..
T Consensus 79 ~is~~~~~~-~~~g~~-~~~~r~lf~~A~~----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-- 150 (476)
T 2ce7_A 79 HISGSDFVE-LFVGVG-AARVRDLFAQAKA----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-- 150 (476)
T ss_dssp EEEGGGTTT-CCTTHH-HHHHHHHHHHHHH----TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC--
T ss_pred eCCHHHHHH-HHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--
Confidence 999999885 477766 5667778776643 36889999999999886544333445555678899999998521
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++++|+++|..+
T Consensus 151 -----------------~~~~viVIaaTn~~~------------------------------------------------ 165 (476)
T 2ce7_A 151 -----------------SKEGIIVMAATNRPD------------------------------------------------ 165 (476)
T ss_dssp -----------------GGGTEEEEEEESCGG------------------------------------------------
T ss_pred -----------------CCCCEEEEEecCChh------------------------------------------------
Confidence 113456666665321
Q ss_pred hcCCcccc--cccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH-HHHHHHHhhcCCCCCHHHHHH
Q 005762 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 515 ~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e-al~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.|.++ +||+..+.++.++.++..+|++.. .+ ... +.++ .+..|+... .++-.|.|++
T Consensus 166 -~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~----~~---------~~~--l~~~v~l~~la~~t--~G~sgadL~~ 227 (476)
T 2ce7_A 166 -ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH----TR---------NKP--LAEDVNLEIIAKRT--PGFVGADLEN 227 (476)
T ss_dssp -GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH----HT---------TSC--BCTTCCHHHHHHTC--TTCCHHHHHH
T ss_pred -hhchhhcccCcceeEeecCCCCHHHHHHHHHHH----HH---------hCC--CcchhhHHHHHHhc--CCCcHHHHHH
Confidence 0344444 599999999999999999887632 11 111 2222 266677652 3455688999
Q ss_pred HHHHHHHHHHh
Q 005762 592 ILESILTEAMY 602 (678)
Q Consensus 592 iIE~il~~a~~ 602 (678)
+++.....+..
T Consensus 228 lv~~Aal~A~~ 238 (476)
T 2ce7_A 228 LVNEAALLAAR 238 (476)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99887766653
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.73 E-value=6.1e-17 Score=163.88 Aligned_cols=219 Identities=22% Similarity=0.243 Sum_probs=132.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|++.+|+.|...+.. +.........| ...+.++||+||||||||++|+++|+.++.+|+
T Consensus 8 i~G~~~~~~~l~~~~~~----~~~~~~~~~~g---------------~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 8 VAGMHEAKLEVREFVDY----LKSPERFLQLG---------------AKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp SCSCHHHHHHHHHHHHH----HHCCC---------------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred hCCHHHHHHHHHHHHHH----HHCHHHHHHcC---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 89999999999887642 11111000000 113578999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccccc-CCCchhHHHHHHHHHHhccee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS-RDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~-~d~s~~~vq~~LL~~LEg~~v 433 (678)
.++++++.. .|.|.. ...+..+|..+.. ..++||||||||.+...+.....+ .+......+..|+..+++..
T Consensus 69 ~~~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~- 141 (262)
T 2qz4_A 69 AMAGAEFVE-VIGGLG-AARVRSLFKEARA----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG- 141 (262)
T ss_dssp EEETTTTSS-SSTTHH-HHHHHHHHHHHHH----TCSEEEEEECC-------------------CHHHHHHHHHHHTCC-
T ss_pred EechHHHHh-hccChh-HHHHHHHHHHHHh----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-
Confidence 999998874 355544 5566677765432 357899999999997654321100 01112235566777666411
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
...++++|+++|..+
T Consensus 142 ------------------~~~~~~vi~~tn~~~----------------------------------------------- 156 (262)
T 2qz4_A 142 ------------------TTDHVIVLASTNRAD----------------------------------------------- 156 (262)
T ss_dssp ------------------TTCCEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------CCCCEEEEecCCChh-----------------------------------------------
Confidence 112456666655321
Q ss_pred hhcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH-HHHHHHHhhcCCCCCHHHHH
Q 005762 514 AYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARGLR 590 (678)
Q Consensus 514 ~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e-al~~La~~a~~~~~GAR~Lr 590 (678)
.+.+.++. ||+..+.+..++.++..+|+... .++ .+ +..+.+ .+..|+... .++..+.|+
T Consensus 157 --~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~----~~~-------~~--~~~~~~~~~~~l~~~~--~g~~~~~l~ 219 (262)
T 2qz4_A 157 --ILDGALMRPGRLDRHVFIDLPTLQERREIFEQH----LKS-------LK--LTQSSTFYSQRLAELT--PGFSGADIA 219 (262)
T ss_dssp --GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHH----HHH-------TT--CCBTHHHHHHHHHHTC--TTCCHHHHH
T ss_pred --hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHH----HHh-------CC--CCcchhhHHHHHHHHC--CCCCHHHHH
Confidence 13455666 99999999999999999988752 111 12 223444 346777754 355667888
Q ss_pred HHHHHHHHHHH
Q 005762 591 AILESILTEAM 601 (678)
Q Consensus 591 ~iIE~il~~a~ 601 (678)
.+++.++..++
T Consensus 220 ~l~~~a~~~a~ 230 (262)
T 2qz4_A 220 NICNEAALHAA 230 (262)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHHH
Confidence 88877665444
No 34
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.71 E-value=1.4e-17 Score=180.18 Aligned_cols=218 Identities=22% Similarity=0.375 Sum_probs=152.5
Q ss_pred CCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC--CEEEEeccccccc----cccccchHHHHHHH
Q 005762 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQA----GYVGEDVESILYKL 378 (678)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--~fv~id~s~l~~s----gyvG~~~~~~l~~l 378 (678)
.|.++.+..+......++....++|++|++||||+++|+++++..+. +|+.+||+.+.+. ..+|+. .+.++..
T Consensus 132 ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~-~g~~tga 210 (368)
T 3dzd_A 132 VGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHE-KGAFTGA 210 (368)
T ss_dssp CCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEEC-SCSSSSC
T ss_pred cccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcc-ccccCCc
Confidence 35566666666666666667789999999999999999999998854 4999999987532 111111 0001111
Q ss_pred HHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcce
Q 005762 379 LAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDIL 457 (678)
Q Consensus 379 ~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNil 457 (678)
.....+.++.+.+|+||||||+.+... +|..||++|+ +....+... .. -..++.
T Consensus 211 ~~~~~g~~~~a~~gtlfldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~~---~~~~~r 265 (368)
T 3dzd_A 211 LTRKKGKLELADQGTLFLDEVGELDQR--------------VQAKLLRVLETGSFTRLGGN--------QK---IEVDIR 265 (368)
T ss_dssp CCCEECHHHHTTTSEEEEETGGGSCHH--------------HHHHHHHHHHHSEECCBTCC--------CB---EECCCE
T ss_pred ccccCChHhhcCCCeEEecChhhCCHH--------------HHHHHHHHHHhCCcccCCCC--------cc---eeeeeE
Confidence 112234566778899999999999987 9999999999 544443211 11 123556
Q ss_pred EEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceE-EecCCcCH
Q 005762 458 FICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPIL-VSLTALTE 536 (678)
Q Consensus 458 fI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~i-v~f~~Lse 536 (678)
+|++++ .++...+.+ ..|.++|+.|+..+ |.++||.+
T Consensus 266 ii~at~-~~l~~~v~~-----------------------------------------g~fr~dL~~rl~~~~i~lPpLre 303 (368)
T 3dzd_A 266 VISATN-KNLEEEIKK-----------------------------------------GNFREDLYYRLSVFQIYLPPLRE 303 (368)
T ss_dssp EEEEES-SCHHHHHHT-----------------------------------------TSSCHHHHHHHTSEEEECCCGGG
T ss_pred EEEecC-CCHHHHHHc-----------------------------------------CCccHHHHHHhCCeEEeCCChhh
Confidence 677665 345444432 23888899999884 89999998
Q ss_pred --HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 537 --DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 537 --eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
+|+..++.. +++++...+. ...+.|++++++.|..+.| ..+.|+|+++|++++.
T Consensus 304 R~~Di~~l~~~----~l~~~~~~~~--~~~~~~~~~a~~~L~~~~w--pGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 304 RGKDVILLAEY----FLKKFAKEYK--KNCFELSEETKEYLMKQEW--KGNVRELKNLIERAVI 359 (368)
T ss_dssp STTHHHHHHHH----HHHHHHHHTT--CCCCCBCHHHHHHHHTCCC--TTHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHH----HHHHHHHHcC--CCCCCcCHHHHHHHHhCCC--CcHHHHHHHHHHHHHH
Confidence 898888875 4555554432 2335699999999999887 6778999999999774
No 35
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.71 E-value=1.3e-16 Score=176.92 Aligned_cols=214 Identities=25% Similarity=0.328 Sum_probs=143.7
Q ss_pred hhhcccCHHHHH---HHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHH
Q 005762 271 LDKFVIGQEKAK---KVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 271 Ld~~VvGQe~ak---~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~ 347 (678)
|++ |+||++++ +.|..++... ...++||+||||||||++|++||+
T Consensus 25 l~~-ivGq~~~~~~~~~L~~~i~~~-------------------------------~~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 25 LAQ-YIGQQHLLAAGKPLPRAIEAG-------------------------------HLHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTT-CCSCHHHHSTTSHHHHHHHHT-------------------------------CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHH-hCCcHHHHhchHHHHHHHHcC-------------------------------CCcEEEEECCCCCcHHHHHHHHHH
Confidence 444 79999999 6776666411 125799999999999999999999
Q ss_pred HhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHH
Q 005762 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (678)
Q Consensus 348 ~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~ 427 (678)
.++.+|+.+++.... ...+...+..+........++||||||||.+... .|+.||+.
T Consensus 73 ~~~~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~ 129 (447)
T 3pvs_A 73 YANADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPH 129 (447)
T ss_dssp HTTCEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHH
T ss_pred HhCCCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHH
Confidence 999999999976432 2345555555443333456789999999999776 88999999
Q ss_pred HhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhc
Q 005762 428 LEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (678)
Q Consensus 428 LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v 507 (678)
||.. .++||++++...
T Consensus 130 le~~-----------------------~v~lI~att~n~----------------------------------------- 145 (447)
T 3pvs_A 130 IEDG-----------------------TITFIGATTENP----------------------------------------- 145 (447)
T ss_dssp HHTT-----------------------SCEEEEEESSCG-----------------------------------------
T ss_pred HhcC-----------------------ceEEEecCCCCc-----------------------------------------
Confidence 9831 134444332110
Q ss_pred chhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHH
Q 005762 508 ESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGAR 587 (678)
Q Consensus 508 ~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR 587 (678)
...+.+.|++|+. ++.|.+++.+++.+|+... ..++.+ ...+..+.+++++++.|++++ ..++|
T Consensus 146 ------~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~----l~~~~~--~~~~~~~~i~~~al~~L~~~~---~Gd~R 209 (447)
T 3pvs_A 146 ------SFELNSALLSRAR-VYLLKSLSTEDIEQVLTQA----MEDKTR--GYGGQDIVLPDETRRAIAELV---NGDAR 209 (447)
T ss_dssp ------GGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHH----HHCTTT--SSTTSSEECCHHHHHHHHHHH---CSCHH
T ss_pred ------ccccCHHHhCcee-EEeeCCcCHHHHHHHHHHH----HHHHhh--hhccccCcCCHHHHHHHHHHC---CCCHH
Confidence 1126678888887 5679999999999998852 211111 011256789999999999984 67899
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEcccccCCCC
Q 005762 588 GLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEESVGSVD 628 (678)
Q Consensus 588 ~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e~v~~~~ 628 (678)
.+.++++.++..+..+ . .....|+.++|....
T Consensus 210 ~lln~Le~a~~~a~~~---~------~~~~~It~e~v~~~l 241 (447)
T 3pvs_A 210 RALNTLEMMADMAEVD---D------SGKRVLKPELLTEIA 241 (447)
T ss_dssp HHHHHHHHHHHHSCBC---T------TSCEECCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc---c------CCCCccCHHHHHHHH
Confidence 9999999877533211 0 123567777776543
No 36
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.70 E-value=1.3e-16 Score=173.37 Aligned_cols=220 Identities=17% Similarity=0.308 Sum_probs=156.0
Q ss_pred CCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEeccccccc----cccccchHHHHH
Q 005762 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQA----GYVGEDVESILY 376 (678)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~l~~s----gyvG~~~~~~l~ 376 (678)
-.+.++.|..+.+....++....+++|+|++|||||++|++|+.... .||+.+||+.+.+. ..+|+.. +.++
T Consensus 139 ~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~-g~~t 217 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEK-GAFT 217 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCT-TSST
T ss_pred hhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCC-CCCC
Confidence 35677888888888888888889999999999999999999999874 69999999986531 1112110 0000
Q ss_pred HHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCc
Q 005762 377 KLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKD 455 (678)
Q Consensus 377 ~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsN 455 (678)
.......+.++.+.+|+||||||+.+... +|..||++|+ +....+... . ....+
T Consensus 218 ga~~~~~g~~~~a~~gtlfldei~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~---~--------~~~~~ 272 (387)
T 1ny5_A 218 GAVSSKEGFFELADGGTLFLDEIGELSLE--------------AQAKLLRVIESGKFYRLGGR---K--------EIEVN 272 (387)
T ss_dssp TCCSCBCCHHHHTTTSEEEEESGGGCCHH--------------HHHHHHHHHHHSEECCBTCC---S--------BEECC
T ss_pred CcccccCCceeeCCCcEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCC---c--------eeecc
Confidence 00111234566778899999999999887 9999999999 444433211 1 12235
Q ss_pred ceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCc
Q 005762 456 ILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTAL 534 (678)
Q Consensus 456 ilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~L 534 (678)
+.+|++++. ++++.+.+ ..|.++|+.|+.. .+.++||
T Consensus 273 ~rii~at~~-~l~~~~~~-----------------------------------------g~fr~dl~~rl~~~~i~lPpL 310 (387)
T 1ny5_A 273 VRILAATNR-NIKELVKE-----------------------------------------GKFREDLYYRLGVIEIEIPPL 310 (387)
T ss_dssp CEEEEEESS-CHHHHHHT-----------------------------------------TSSCHHHHHHHTTEEEECCCG
T ss_pred EEEEEeCCC-CHHHHHHc-----------------------------------------CCccHHHHHhhcCCeecCCcc
Confidence 567776653 44444432 2378888889875 5889999
Q ss_pred CH--HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 535 TE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 535 se--eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
.+ +|+..++.. +++++.+.+.. ....+++++++.|..+.| ..|+|+|+++|++++..
T Consensus 311 reR~~Di~~l~~~----~l~~~~~~~~~--~~~~~~~~a~~~l~~~~w--pGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 311 RERKEDIIPLANH----FLKKFSRKYAK--EVEGFTKSAQELLLSYPW--YGNVRELKNVIERAVLF 369 (387)
T ss_dssp GGCHHHHHHHHHH----HHHHHHHHTTC--CCCEECHHHHHHHHHSCC--TTHHHHHHHHHHHHHHH
T ss_pred hhccccHHHHHHH----HHHHHHHHcCC--CCCCCCHHHHHHHHhCCC--CcHHHHHHHHHHHHHHh
Confidence 86 888888775 44555443322 224699999999999877 67899999999998753
No 37
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.69 E-value=1.9e-16 Score=167.01 Aligned_cols=205 Identities=20% Similarity=0.264 Sum_probs=126.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC-------CEEEEecccccccc----------------c----cccchHHHH---
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV-------PFVIADATTLTQAG----------------Y----VGEDVESIL--- 375 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~-------~fv~id~s~l~~sg----------------y----vG~~~~~~l--- 375 (678)
.++||+||||||||++|+++|+.++. +| +|....... + .+......+
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL 122 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccchhhhhccccccCCCcccccCCCcchhhheeec
Confidence 57999999999999999999999863 22 222111000 0 111111111
Q ss_pred --HHHHHhh-----chhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCe
Q 005762 376 --YKLLAQA-----EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDS 448 (678)
Q Consensus 376 --~~l~~~a-----~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~ 448 (678)
...+... .+.+..+.++||||||||++... +++.|++.|+.....+...+..
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g~~------- 181 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDGLS------- 181 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTTCC-------
T ss_pred hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecceE-------
Confidence 1222222 23334456889999999999876 8999999999443333222211
Q ss_pred EEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceE
Q 005762 449 IQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPIL 528 (678)
Q Consensus 449 i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~i 528 (678)
.-...++++|+++|..+ ..+.+.|++||+..
T Consensus 182 -~~~~~~~~li~~~n~~~------------------------------------------------~~l~~~L~~R~~~~ 212 (350)
T 1g8p_A 182 -IRHPARFVLVGSGNPEE------------------------------------------------GDLRPQLLDRFGLS 212 (350)
T ss_dssp -EEEECCEEEEEEECSCS------------------------------------------------CCCCHHHHTTCSEE
T ss_pred -EeeCCceEEEEEeCCCC------------------------------------------------CCCCHHHHhhcceE
Confidence 11223667777666311 12778899999998
Q ss_pred EecCCcC-HHHHHHHHhchHH------HH----------HHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCC-CHHHHH
Q 005762 529 VSLTALT-EDQLVKVLTEPKN------AL----------GKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNT-GARGLR 590 (678)
Q Consensus 529 v~f~~Ls-eeeL~~Il~~~ln------~L----------~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~-GAR~Lr 590 (678)
+.+.+++ .++..+|+...+. .+ .+.+..........+.++++++++|+++++..+. +.|.+.
T Consensus 213 ~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~ 292 (350)
T 1g8p_A 213 VEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGEL 292 (350)
T ss_dssp EECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHH
Confidence 9999994 6666677765211 00 0111100111123457999999999999887666 789999
Q ss_pred HHHHHHHHHHHhc
Q 005762 591 AILESILTEAMYE 603 (678)
Q Consensus 591 ~iIE~il~~a~~~ 603 (678)
++++.+...+..+
T Consensus 293 ~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 293 TLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999877666544
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.69 E-value=1e-15 Score=159.82 Aligned_cols=202 Identities=20% Similarity=0.344 Sum_probs=143.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
++|++.+++.|...+..... .. ....++||+||||||||++|+++|+.++.+|+
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~----~~----------------------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKA----RK----------------------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHH----HC----------------------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred hhCHHHHHHHHHHHHHHHHc----cC----------------------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 79999999998887752210 00 02368999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+++..+.. ...+...+... .+.+++|||||||.+... .++.|+.+|+...+.
T Consensus 68 ~~~~~~~~~--------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~~ 120 (324)
T 1hqc_A 68 VTSGPAIEK--------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVMD 120 (324)
T ss_dssp EECTTTCCS--------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEEE
T ss_pred EEeccccCC--------hHHHHHHHHHh-----ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhhhH
Confidence 999987642 22333343321 136689999999999876 899999999954433
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
+-... ......+.....++++|++++..+
T Consensus 121 ~v~~~---~~~~~~~~~~~~~~~~i~~t~~~~------------------------------------------------ 149 (324)
T 1hqc_A 121 IVIGQ---GPAARTIRLELPRFTLIGATTRPG------------------------------------------------ 149 (324)
T ss_dssp ECCSS---SSSCCCEEEECCCCEEEEEESCCS------------------------------------------------
T ss_pred Hhccc---cccccccccCCCCEEEEEeCCCcc------------------------------------------------
Confidence 21110 011123444556778888766321
Q ss_pred hcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005762 515 YGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (678)
Q Consensus 515 ~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE 594 (678)
.+.+.|.+||+.++.|.+++.+++.+++... . ... .+.+++++++.|++++ ....|.++++++
T Consensus 150 -~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~--------~---~~~--~~~~~~~~~~~l~~~~---~G~~r~l~~~l~ 212 (324)
T 1hqc_A 150 -LITAPLLSRFGIVEHLEYYTPEELAQGVMRD--------A---RLL--GVRITEEAALEIGRRS---RGTMRVAKRLFR 212 (324)
T ss_dssp -SCSCSTTTTCSCEEECCCCCHHHHHHHHHHH--------H---HTT--TCCCCHHHHHHHHHHS---CSCHHHHHHHHH
T ss_pred -cCCHHHHhcccEEEecCCCCHHHHHHHHHHH--------H---Hhc--CCCCCHHHHHHHHHHc---cCCHHHHHHHHH
Confidence 2678899999889999999999988877642 1 112 2458999999999984 556788888887
Q ss_pred HHH
Q 005762 595 SIL 597 (678)
Q Consensus 595 ~il 597 (678)
.+.
T Consensus 213 ~~~ 215 (324)
T 1hqc_A 213 RVR 215 (324)
T ss_dssp HHT
T ss_pred HHH
Confidence 654
No 39
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.69 E-value=2.7e-16 Score=176.10 Aligned_cols=221 Identities=22% Similarity=0.309 Sum_probs=154.2
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|+|++.+++.|.+.+....+. .......+ ..++.++||+||||||||++|++||+.++.+|
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~---~~~~~~~g---------------~~~~~~vLL~GppGtGKT~lAraia~~~~~~f 266 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRH---PALFKAIG---------------VKPPRGILLYGPPGTGKTLIARAVANETGAFF 266 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHC---HHHHHHHT---------------CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE
T ss_pred HcCCHHHHHHHHHHHHHHHhhC---HHHHHhcC---------------CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 3899999999999988633111 00000000 12357899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.++|.++. ..|+|+. ...+..+|..+.. ..++||||||||.+...+... .......+++.||..|++...
T Consensus 267 v~vn~~~l~-~~~~g~~-~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~ 337 (489)
T 3hu3_A 267 FLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQ 337 (489)
T ss_dssp EEEEHHHHH-TSCTTHH-HHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCT
T ss_pred EEEEchHhh-hhhcchh-HHHHHHHHHHHHh----cCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhcccc
Confidence 999999988 4577776 6677788877643 367899999999998764321 111224689999999995211
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
..++++|+++|..+
T Consensus 338 -------------------~~~v~vIaaTn~~~----------------------------------------------- 351 (489)
T 3hu3_A 338 -------------------RAHVIVMAATNRPN----------------------------------------------- 351 (489)
T ss_dssp -------------------TSCEEEEEEESCGG-----------------------------------------------
T ss_pred -------------------CCceEEEEecCCcc-----------------------------------------------
Confidence 12456666665321
Q ss_pred hhcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 514 AYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 514 ~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.+.+.. ||+..+.|..++.++..+|+... .....+. .+..++.|+... .++..+.|+.
T Consensus 352 --~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~-------------~~~~~l~-~~~~l~~la~~t--~g~s~~dL~~ 413 (489)
T 3hu3_A 352 --SIDPALRRFGRFDREVDIGIPDATGRLEILQIH-------------TKNMKLA-DDVDLEQVANET--HGHVGADLAA 413 (489)
T ss_dssp --GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH-------------TTTSCBC-TTCCHHHHHHTC--TTCCHHHHHH
T ss_pred --ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHH-------------HhcCCCc-chhhHHHHHHHc--cCCcHHHHHH
Confidence 14455555 99999999999999999998742 1122222 222356777754 4677899999
Q ss_pred HHHHHHHHHHhcCC
Q 005762 592 ILESILTEAMYEIP 605 (678)
Q Consensus 592 iIE~il~~a~~~~p 605 (678)
++......++.+..
T Consensus 414 L~~~A~~~a~r~~~ 427 (489)
T 3hu3_A 414 LCSEAALQAIRKKM 427 (489)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcc
Confidence 99998888887643
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.67 E-value=7.1e-16 Score=164.10 Aligned_cols=212 Identities=20% Similarity=0.281 Sum_probs=138.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCC--C
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--P 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~--~ 352 (678)
++||+.+++.+...+.. +. ... .+..++||+||||||||++|+++|+.++. +
T Consensus 46 ivG~~~~~~~l~~l~~~----~~-~~~---------------------~~~~~vLl~GppGtGKT~la~~la~~l~~~~~ 99 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEM----IR-EGK---------------------IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP 99 (368)
T ss_dssp EESCHHHHHHHHHHHHH----HH-TTC---------------------CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC
T ss_pred ccChHHHHHHHHHHHHH----HH-cCC---------------------CCCCEEEEECCCCCCHHHHHHHHHHHhcccCC
Confidence 79999999987665531 11 110 11368999999999999999999999974 8
Q ss_pred EEEEeccccccccccccc------------------------------------------------hHHHHHHHHHhhch
Q 005762 353 FVIADATTLTQAGYVGED------------------------------------------------VESILYKLLAQAEF 384 (678)
Q Consensus 353 fv~id~s~l~~sgyvG~~------------------------------------------------~~~~l~~l~~~a~~ 384 (678)
|+.+++..+... +.+.. ....+...+..+..
T Consensus 100 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 178 (368)
T 3uk6_A 100 FTAIAGSEIFSL-EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVA 178 (368)
T ss_dssp EEEEEGGGGSCS-SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHH
T ss_pred cccccchhhhhc-ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHH
Confidence 999988764421 11110 01223333332221
Q ss_pred hHhhh-----cCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCc-ceE
Q 005762 385 NVEAA-----QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKD-ILF 458 (678)
Q Consensus 385 ~v~~a-----~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsN-ilf 458 (678)
..... .++||||||||.+... .++.|++.++.. ....+.+.+.+ +.+
T Consensus 179 ~~~~~g~~~~~~~vl~IDEi~~l~~~--------------~~~~L~~~le~~-------------~~~~~ii~t~~~~~~ 231 (368)
T 3uk6_A 179 EWREEGKAEIIPGVLFIDEVHMLDIE--------------SFSFLNRALESD-------------MAPVLIMATNRGITR 231 (368)
T ss_dssp HHHHHTC---CBCEEEEESGGGSBHH--------------HHHHHHHHTTCT-------------TCCEEEEEESCSEEE
T ss_pred HhhhhccccccCceEEEhhccccChH--------------HHHHHHHHhhCc-------------CCCeeeeecccceee
Confidence 11111 1579999999999876 899999999831 11233344433 333
Q ss_pred EecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHH
Q 005762 459 ICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQ 538 (678)
Q Consensus 459 I~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Lseee 538 (678)
|.+++... ...+.|.|++||.. +.|++|+.++
T Consensus 232 i~~t~~~~-----------------------------------------------~~~l~~~l~sR~~~-i~~~~~~~~e 263 (368)
T 3uk6_A 232 IRGTSYQS-----------------------------------------------PHGIPIDLLDRLLI-VSTTPYSEKD 263 (368)
T ss_dssp CBTSSCEE-----------------------------------------------ETTCCHHHHTTEEE-EEECCCCHHH
T ss_pred eeccCCCC-----------------------------------------------cccCCHHHHhhccE-EEecCCCHHH
Confidence 32221100 11266788899977 6999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhc
Q 005762 539 LVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 539 L~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
+.+|+... . ...+ +.+++++++.|+++++ +.+.|.+.++++.++..+..+
T Consensus 264 ~~~il~~~----~-------~~~~--~~~~~~~l~~l~~~~~--~G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 264 TKQILRIR----C-------EEED--VEMSEDAYTVLTRIGL--ETSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp HHHHHHHH----H-------HHTT--CCBCHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH----H-------HHcC--CCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHh
Confidence 99998752 1 1123 4599999999999874 277899999999988777654
No 41
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.67 E-value=1e-16 Score=167.78 Aligned_cols=158 Identities=16% Similarity=0.264 Sum_probs=103.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 404 (678)
+.++||+||||||||++|++||+.++.+|+.++++++. ..|+|.. +..+...|..+...+....++||||||||++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 57899999999999999999999999999999999987 4588877 677888887775444455789999999999988
Q ss_pred hhccccccCCCchhHHHHHHHHHHhcce-eecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcC
Q 005762 405 KAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFG 483 (678)
Q Consensus 405 ~~~~~~~~~d~s~~~vq~~LL~~LEg~~-v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~ 483 (678)
.+.+ ..........+++.|+++|++.. +.++. ........+++||+|+|..+
T Consensus 114 ~~~~-~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~---------~~~~~~~~~v~vI~ttN~~~----------------- 166 (293)
T 3t15_A 114 RMGG-TTQYTVNNQMVNATLMNIADNPTNVQLPG---------MYNKQENARVPIIVTGNDFS----------------- 166 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC--------------------CCCCCCEEEECSSCC-----------------
T ss_pred CCCC-CccccchHHHHHHHHHHHhcccccccccc---------ccccccCCCcEEEEecCCcc-----------------
Confidence 5332 11222234568899999999432 21111 01123456788888887432
Q ss_pred cccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccc--cccceEEecCCcCHHHHHHHHhc
Q 005762 484 APVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
.+.|+|+ +||+.++.++ +.++..+|++.
T Consensus 167 --------------------------------~ld~al~R~~R~d~~i~~P--~~~~r~~Il~~ 196 (293)
T 3t15_A 167 --------------------------------TLYAPLIRDGRMEKFYWAP--TREDRIGVCTG 196 (293)
T ss_dssp --------------------------------C--CHHHHHHHEEEEEECC--CHHHHHHHHHH
T ss_pred --------------------------------cCCHHHhCCCCCceeEeCc--CHHHHHHHHHH
Confidence 1444555 5898877653 99999999873
No 42
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.67 E-value=1.4e-16 Score=167.86 Aligned_cols=231 Identities=21% Similarity=0.236 Sum_probs=146.7
Q ss_pred HHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHH
Q 005762 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (678)
Q Consensus 265 ~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAra 344 (678)
..+...+.+.|+||+.+++.+..++.. ..++||+||||||||++|++
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~---------------------------------~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICT---------------------------------GGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHH---------------------------------TCCEEEESCCCHHHHHHHHH
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHc---------------------------------CCeEEEECCCCCcHHHHHHH
Confidence 346667777899999999988777641 26899999999999999999
Q ss_pred HHHHhCCCEEEEeccc-cccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHH
Q 005762 345 LARHVNVPFVIADATT-LTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (678)
Q Consensus 345 lA~~l~~~fv~id~s~-l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~ 423 (678)
+|+.++.+|+.++++. +....++|..........+....+.+ ..+||||||||++.+. +++.
T Consensus 66 la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~--------------~~~~ 128 (331)
T 2r44_A 66 LAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAK--------------VQSA 128 (331)
T ss_dssp HHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHH--------------HHHH
T ss_pred HHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHH--------------HHHH
Confidence 9999999999999852 21111112110000000000000000 1379999999998876 9999
Q ss_pred HHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHH
Q 005762 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSL 503 (678)
Q Consensus 424 LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~l 503 (678)
|++.|+...+.+. |.. .-...++++|+|.|..+. .
T Consensus 129 Ll~~l~~~~~~~~--g~~--------~~~~~~~~viat~np~~~------------~----------------------- 163 (331)
T 2r44_A 129 LLECMQEKQVTIG--DTT--------YPLDNPFLVLATQNPVEQ------------E----------------------- 163 (331)
T ss_dssp HHHHHHHSEEEET--TEE--------EECCSSCEEEEEECTTCC------------S-----------------------
T ss_pred HHHHHhcCceeeC--CEE--------EECCCCEEEEEecCCCcc------------c-----------------------
Confidence 9999995555441 111 112234556665553210 0
Q ss_pred HhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHH-------------HHHHHHHHHhcCCceeeeCHH
Q 005762 504 LESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA-------------LGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 504 l~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~-------------L~~q~~~~~~~~gv~l~~t~e 570 (678)
-.+.+.+.|++||+..+.+.+++.+++.+|+...... -+...++.. ..+.++++
T Consensus 164 ---------~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~v~~~~~ 230 (331)
T 2r44_A 164 ---------GTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI----NKVTISES 230 (331)
T ss_dssp ---------CCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH----HTCBCCHH
T ss_pred ---------CcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh----ccCCCCHH
Confidence 0112678899999988999999999999998753211 011111111 24568999
Q ss_pred HHHHHHHhhc-----------------CCCCCHHHHHHHHHHHHHHHHhc
Q 005762 571 ALRVIAKKAT-----------------AKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 571 al~~La~~a~-----------------~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
++++|++... ....+.|.+.++++..-..+..+
T Consensus 231 ~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~ 280 (331)
T 2r44_A 231 LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN 280 (331)
T ss_dssp HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc
Confidence 9999987541 11346899988888766555543
No 43
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.66 E-value=1.2e-15 Score=171.26 Aligned_cols=218 Identities=25% Similarity=0.301 Sum_probs=143.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.|+|++++|+.|.+.+.. |+ ....-... .+. .+.++||+||||||||+||++||..++.+|
T Consensus 32 dv~G~~~~k~~l~~lv~~-l~---~~~~~~~l--------------g~~-ip~GvLL~GppGtGKTtLaraIa~~~~~~~ 92 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEF-LK---NPSRFHEM--------------GAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPF 92 (499)
T ss_dssp SSCSCHHHHHHHHHHHHH-HH---CGGGTTTT--------------SCC-CCSEEEEECSSSSSHHHHHHHHHHHTTCCE
T ss_pred HcCCcHHHHHHHHHHHHH-hh---chhhhhhc--------------cCC-CCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 389999999999887742 21 11110000 011 235699999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhccee
Q 005762 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 354 v~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
+.+++.++.. .|+|.. ...+..+|+.+.. ..++|+||||||.+...+.....+.....+..++.||..|+|...
T Consensus 93 i~i~g~~~~~-~~~g~~-~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 93 ITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp EEEEGGGGTS-SCTTHH-HHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred EEEehhHHHH-hhhhhH-HHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 9999999874 366665 5567777766532 256899999999987654321111122234577888888885321
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
...+++|++++..+
T Consensus 167 -------------------~~~viviAatn~p~----------------------------------------------- 180 (499)
T 2dhr_A 167 -------------------DTAIVVMAATNRPD----------------------------------------------- 180 (499)
T ss_dssp -------------------SCCCEEEECCSCGG-----------------------------------------------
T ss_pred -------------------CccEEEEEecCChh-----------------------------------------------
Confidence 12345555554221
Q ss_pred hhcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHH-HHHHHHhhcCCCCCHHHHH
Q 005762 514 AYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA-LRVIAKKATAKNTGARGLR 590 (678)
Q Consensus 514 ~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ea-l~~La~~a~~~~~GAR~Lr 590 (678)
.+.|.|+. ||+..+.++.++.++..+|++.. ..+ +.+++++ +..|+.. + .++-.|+|+
T Consensus 181 --~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~-------------~~~--~~l~~dv~l~~lA~~-t-~G~~gadL~ 241 (499)
T 2dhr_A 181 --ILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-------------ARG--KPLAEDVDLALLAKR-T-PGFVGADLE 241 (499)
T ss_dssp --GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHT-------------TSS--SCCCCSSTTHHHHTT-S-CSCCHHHHH
T ss_pred --hcCcccccccccceEEecCCCCHHHHHHHHHHH-------------Hhc--CCCChHHHHHHHHHh-c-CCCCHHHHH
Confidence 04555654 89999999999999999988642 112 2344444 5666665 3 344458999
Q ss_pred HHHHHHHHHHH
Q 005762 591 AILESILTEAM 601 (678)
Q Consensus 591 ~iIE~il~~a~ 601 (678)
++++.+...+.
T Consensus 242 ~lv~~Aa~~A~ 252 (499)
T 2dhr_A 242 NLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99988776554
No 44
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.64 E-value=2e-15 Score=156.74 Aligned_cols=223 Identities=21% Similarity=0.289 Sum_probs=145.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|.|.+++|+.|.+.+...+..... +.. -.+. .+.+++|+||||||||+|+++||..++.+++
T Consensus 12 i~g~~~~~~~l~~~i~~~~~~~~~----------------l~~-~~l~-~~~GvlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 12 IGALEDIREELTMAILAPVRNPDQ----------------FKA-LGLV-TPAGVLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp CCHHHHHHHHHHHHHTHHHHSHHH----------------HHH-TTCC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHH----------------HHH-cCCC-CCCeEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 899999999999887654432110 000 0111 1356999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+++.++.. .|+|+. +..+..+|+.+.. ..++|+|+||||.+...+..... .....+.+.++..|+|...
T Consensus 74 ~i~g~~l~~-~~~~~~-~~~i~~vf~~a~~----~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~- 143 (274)
T 2x8a_A 74 SVKGPELLN-MYVGES-ERAVRQVFQRAKN----SAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEA- 143 (274)
T ss_dssp EEETTTTCS-STTHHH-HHHHHHHHHHHHH----TCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCS-
T ss_pred EEEcHHHHh-hhhhHH-HHHHHHHHHHHHh----cCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccc-
Confidence 999998874 466655 5667777776532 26789999999988764322111 1113477889999985321
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++++++.+..+
T Consensus 144 ------------------~~~~i~ia~tn~p~------------------------------------------------ 157 (274)
T 2x8a_A 144 ------------------RQQVFIMAATNRPD------------------------------------------------ 157 (274)
T ss_dssp ------------------TTCEEEEEEESCGG------------------------------------------------
T ss_pred ------------------cCCEEEEeecCChh------------------------------------------------
Confidence 01223344333211
Q ss_pred hcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeee-CHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHF-TEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 515 ~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~-t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
-+.|.|+. |||..|.++.++.++..+|++.. .+ ......+ .+-.++.|+......++....|..
T Consensus 158 -~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~----~~--------~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~ 224 (274)
T 2x8a_A 158 -IIDPAILRPGRLDKTLFVGLPPPADRLAILKTI----TK--------NGTKPPLDADVNLEAIAGDLRCDCYTGADLSA 224 (274)
T ss_dssp -GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHH----TT--------TTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHH
T ss_pred -hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHH----Hh--------cccCCCCccccCHHHHHHhhccCCcCHHHHHH
Confidence 14455554 99999999999999999998741 11 1111112 122356677654334677789999
Q ss_pred HHHHHHHHHHhcC
Q 005762 592 ILESILTEAMYEI 604 (678)
Q Consensus 592 iIE~il~~a~~~~ 604 (678)
+++.....++.+.
T Consensus 225 l~~~a~~~a~~~~ 237 (274)
T 2x8a_A 225 LVREASICALRQE 237 (274)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888654
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.63 E-value=1.1e-15 Score=156.82 Aligned_cols=212 Identities=21% Similarity=0.238 Sum_probs=132.3
Q ss_pred HHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHH
Q 005762 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 268 ~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...+...++|++.+.+.+..........+..... ....++||+||||||||++|+++|+
T Consensus 28 ~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~---------------------~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 28 ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDR---------------------TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSS---------------------CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHhccCC---------------------CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3344455889988877766543222222221111 1247899999999999999999999
Q ss_pred HhCCCEEEEeccccccccccccch---HHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHH
Q 005762 348 HVNVPFVIADATTLTQAGYVGEDV---ESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQAL 424 (678)
Q Consensus 348 ~l~~~fv~id~s~l~~sgyvG~~~---~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~L 424 (678)
.++.+|+.+++.+. ++|... ...+..+|..+. ...++||||||||.+...... + ......+++.|
T Consensus 87 ~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~---~-~~~~~~~l~~L 154 (272)
T 1d2n_A 87 ESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDAY----KSQLSCVVVDDIERLLDYVPI---G-PRFSNLVLQAL 154 (272)
T ss_dssp HHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHHH----TSSEEEEEECCHHHHTTCBTT---T-TBCCHHHHHHH
T ss_pred HhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHHH----hcCCcEEEEEChhhhhccCCC---C-hhHHHHHHHHH
Confidence 99999999998763 334432 233444554432 235789999999998543211 1 11123467777
Q ss_pred HHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHH
Q 005762 425 LKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLL 504 (678)
Q Consensus 425 L~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll 504 (678)
+..+++... ...++++|++++..+ .
T Consensus 155 ~~~~~~~~~------------------~~~~~~ii~ttn~~~------------------------------------~- 179 (272)
T 1d2n_A 155 LVLLKKAPP------------------QGRKLLIIGTTSRKD------------------------------------V- 179 (272)
T ss_dssp HHHTTCCCS------------------TTCEEEEEEEESCHH------------------------------------H-
T ss_pred HHHhcCccC------------------CCCCEEEEEecCChh------------------------------------h-
Confidence 777663110 112345666555321 0
Q ss_pred hhcchhhhhhhcCCc-ccccccceEEecCCcCH-HHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcC-
Q 005762 505 ESVESSDLIAYGLIP-EFVGRFPILVSLTALTE-DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATA- 581 (678)
Q Consensus 505 ~~v~~edLi~~g~~P-efl~R~~~iv~f~~Lse-eeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~- 581 (678)
+.+ .+.+||+..+.++++++ +++.+++... ..++++++..|++....
T Consensus 180 ------------l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~------------------~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 180 ------------LQEMEMLNAFSTTIHVPNIATGEQLLEALELL------------------GNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp ------------HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH------------------TCSCHHHHHHHHHHHTTS
T ss_pred ------------cchhhhhcccceEEcCCCccHHHHHHHHHHhc------------------CCCCHHHHHHHHHHhcCC
Confidence 111 45678899999999998 7777766530 13688999999987531
Q ss_pred -CCCCHHHHHHHHHHHH
Q 005762 582 -KNTGARGLRAILESIL 597 (678)
Q Consensus 582 -~~~GAR~Lr~iIE~il 597 (678)
...++|.|.++++.+.
T Consensus 230 ~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 230 KVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp EEEECHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHh
Confidence 1336888888887643
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.63 E-value=2.6e-15 Score=157.65 Aligned_cols=193 Identities=18% Similarity=0.245 Sum_probs=134.8
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
+++ ++||+.+++.|..++... ..+..+||+||||||||++|+++|+.++
T Consensus 25 ~~~-ivg~~~~~~~l~~~l~~~------------------------------~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 25 IDE-CILPAFDKETFKSITSKG------------------------------KIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp TTT-SCCCHHHHHHHHHHHHTT------------------------------CCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred HHH-HhCcHHHHHHHHHHHHcC------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 444 799999999888777410 0124578888899999999999999999
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHHhhchhH-hhhcCcEEEEcCccchh-hhhccccccCCCchhHHHHHHHHHH
Q 005762 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV-EAAQQGMVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKML 428 (678)
Q Consensus 351 ~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v-~~a~~gILfIDEIDkl~-~~~~~~~~~~d~s~~~vq~~LL~~L 428 (678)
.+++.+++++.. ...+...+....... ....+.||||||+|.+. .. .++.|++.|
T Consensus 74 ~~~~~i~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~--------------~~~~L~~~l 130 (324)
T 3u61_B 74 ADMMFVNGSDCK---------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE--------------SQRHLRSFM 130 (324)
T ss_dssp EEEEEEETTTCC---------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH--------------HHHHHHHHH
T ss_pred CCEEEEcccccC---------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH--------------HHHHHHHHH
Confidence 999999987643 122333222211100 01245799999999997 55 899999999
Q ss_pred hcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcc
Q 005762 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (678)
Q Consensus 429 Eg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~ 508 (678)
+.. ..++.||++++...
T Consensus 131 e~~---------------------~~~~~iI~~~n~~~------------------------------------------ 147 (324)
T 3u61_B 131 EAY---------------------SSNCSIIITANNID------------------------------------------ 147 (324)
T ss_dssp HHH---------------------GGGCEEEEEESSGG------------------------------------------
T ss_pred HhC---------------------CCCcEEEEEeCCcc------------------------------------------
Confidence 831 13446666665221
Q ss_pred hhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCH-HHHHHHHHhhcCCCCCHH
Q 005762 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE-KALRVIAKKATAKNTGAR 587 (678)
Q Consensus 509 ~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~-eal~~La~~a~~~~~GAR 587 (678)
.+.+.|.+|+. ++.|.+++.+++.+|+......+ .+.+...+ +.+++ ++++.|++.+ +.+.|
T Consensus 148 -------~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l----~~~~~~~~--~~~~~~~~~~~l~~~~---~gd~R 210 (324)
T 3u61_B 148 -------GIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRL----TEICKHEG--IAIADMKVVAALVKKN---FPDFR 210 (324)
T ss_dssp -------GSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHH----HHHHHHHT--CCBSCHHHHHHHHHHT---CSCTT
T ss_pred -------ccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHH----HHHHHHcC--CCCCcHHHHHHHHHhC---CCCHH
Confidence 16778888985 68999999999999888643333 33333334 45787 9999999984 56788
Q ss_pred HHHHHHHHHH
Q 005762 588 GLRAILESIL 597 (678)
Q Consensus 588 ~Lr~iIE~il 597 (678)
.+.+.++.+.
T Consensus 211 ~a~~~L~~~~ 220 (324)
T 3u61_B 211 KTIGELDSYS 220 (324)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 47
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.62 E-value=4.5e-17 Score=166.28 Aligned_cols=218 Identities=26% Similarity=0.335 Sum_probs=132.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|++.+++.|...+.. +. ....-...+ ...+.++||+||||||||++|+++|+.++.+|+
T Consensus 13 i~G~~~~~~~l~~~~~~-~~---~~~~~~~~~---------------~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDF-LK---YPERYANLG---------------AKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp SSSCTTTHHHHHHHHHH-HH---CHHHHHHHS---------------CCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred hCCcHHHHHHHHHHHHH-HH---ChHHHHHCC---------------CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 89999999999887642 11 100000000 012467999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc-ccCCCchhHHHHHHHHHHhccee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN-ISRDVSGEGVQQALLKMLEGTIV 433 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~-~~~d~s~~~vq~~LL~~LEg~~v 433 (678)
.++++++.. .|.|.. ...+..+|..+.. ..++||||||+|.+...+.... ...+.....+++.|+..|++...
T Consensus 74 ~v~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 74 SMGGSSFIE-MFVGLG-ASRVRDLFETAKK----QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp CCCSCTTTT-SCSSSC-SSSSSTTHHHHHH----SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred EechHHHHH-hhcchH-HHHHHHHHHHHHh----cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 999998774 355554 2333444444322 2568999999999987642211 01111222356667777763110
Q ss_pred ecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhh
Q 005762 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (678)
Q Consensus 434 ~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi 513 (678)
...++++|++++..+
T Consensus 148 ------------------~~~~v~vi~ttn~~~----------------------------------------------- 162 (268)
T 2r62_A 148 ------------------ENAPVIVLAATNRPE----------------------------------------------- 162 (268)
T ss_dssp ------------------SCSCCEEEECBSCCT-----------------------------------------------
T ss_pred ------------------CCCCEEEEEecCCch-----------------------------------------------
Confidence 123456676666331
Q ss_pred hhcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 514 AYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 514 ~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.+.++. ||+..+.|..++.++..+|+... +. +..+. ++..++.|++.. .++..|.|++
T Consensus 163 --~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~-----------~~--~~~~~-~~~~~~~la~~~--~g~~g~dl~~ 224 (268)
T 2r62_A 163 --ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVH-----------IK--GVKLA-NDVNLQEVAKLT--AGLAGADLAN 224 (268)
T ss_dssp --TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHH-----------TS--SSCCC-SSCCTTTTTSSS--CSSCHHHHHH
T ss_pred --hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHH-----------Hh--cCCCC-CccCHHHHHHHc--CCCCHHHHHH
Confidence 13445555 89989999999999999988631 11 11111 222245566543 3455688888
Q ss_pred HHHHHHHHH
Q 005762 592 ILESILTEA 600 (678)
Q Consensus 592 iIE~il~~a 600 (678)
+++.+...+
T Consensus 225 l~~~a~~~a 233 (268)
T 2r62_A 225 IINEAALLA 233 (268)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 888766544
No 48
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=1.5e-16 Score=182.24 Aligned_cols=259 Identities=17% Similarity=0.175 Sum_probs=149.3
Q ss_pred HHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHH
Q 005762 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (678)
Q Consensus 265 ~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAra 344 (678)
..+.+.|...|+||+.+|+.|..++. . |..... . . .......|+||+||||||||+||++
T Consensus 287 ~~l~~~l~~~I~G~e~vk~al~~~l~--------~------g~~~~~---~-~--~~~r~~~~vLL~GppGtGKT~LAr~ 346 (595)
T 3f9v_A 287 DRIISSIAPSIYGHWELKEALALALF--------G------GVPKVL---E-D--TRIRGDIHILIIGDPGTAKSQMLQF 346 (595)
T ss_dssp GTHHHHTSSTTSCCHHHHHHHTTTTT--------C------CCCEET---T-T--TEECCSCCEEEEESSCCTHHHHHHS
T ss_pred HHHHHhhcchhcChHHHHHHHHHHHh--------C------CCcccc---c-C--CCcCCCcceEEECCCchHHHHHHHH
Confidence 44777788889999999988855542 0 000000 0 0 1112345999999999999999999
Q ss_pred HHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHH
Q 005762 345 LARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQAL 424 (678)
Q Consensus 345 lA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~L 424 (678)
+|+.+...++.... .....++.+..........+....+.+..+.++||||||||++.+. +|+.|
T Consensus 347 la~~~~r~~~~~~~-~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~--------------~q~~L 411 (595)
T 3f9v_A 347 ISRVAPRAVYTTGK-GSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE--------------DRVAI 411 (595)
T ss_dssp SSTTCSCEECCCTT-CSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------HHHHH
T ss_pred HHHhCCCceecCCC-ccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------Hhhhh
Confidence 99999766554221 0111222222211111111122234455667899999999999876 99999
Q ss_pred HHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHH
Q 005762 425 LKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLL 504 (678)
Q Consensus 425 L~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll 504 (678)
+++||...+.+...|..... ..++.+|+|+|... +....... +.
T Consensus 412 l~~le~~~i~i~~~g~~~~~--------~~~~~vIaatNp~~-------G~~~~~~~---------------------~~ 455 (595)
T 3f9v_A 412 HEAMEQQTVSIAKAGIVAKL--------NARAAVIAAGNPKF-------GRYISERP---------------------VS 455 (595)
T ss_dssp HHHHHSSSEEEESSSSEEEE--------CCCCEEEEEECCTT-------CCSCTTSC---------------------SC
T ss_pred HHHHhCCEEEEecCCcEEEe--------cCceEEEEEcCCcC-------CccCcccC---------------------ch
Confidence 99999666655433332222 23455555555321 00000000 00
Q ss_pred hhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHH-------------HHHHHHHHHHhcCCceeeeCHHH
Q 005762 505 ESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN-------------ALGKQYKRLFSMNNVKLHFTEKA 571 (678)
Q Consensus 505 ~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln-------------~L~~q~~~~~~~~gv~l~~t~ea 571 (678)
+ ...+.++|++|||.++.+.++..++...|+...+. ..+++|....+ ..+...+++++
T Consensus 456 ~--------ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar-~~~~p~ls~ea 526 (595)
T 3f9v_A 456 D--------NINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR-KYVTPKITSEA 526 (595)
T ss_dssp T--------TTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH-HHHCCCCCCCT
T ss_pred h--------ccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH-HhCCCCCCHHH
Confidence 0 11388999999998777777766554444443211 11223332211 11233688889
Q ss_pred HHHHHHhhc------------CCCCCHHHHHHHHHHHHHHHHhc
Q 005762 572 LRVIAKKAT------------AKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 572 l~~La~~a~------------~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
.+.|.++.. .....+|.|.+++.-.-..|..+
T Consensus 527 ~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~ 570 (595)
T 3f9v_A 527 KNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMA 570 (595)
T ss_dssp HHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHh
Confidence 999888732 13567899999998665555443
No 49
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.61 E-value=1.1e-14 Score=147.80 Aligned_cols=219 Identities=25% Similarity=0.315 Sum_probs=137.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|++.++..+...+.. |.... . +. . -.+.. +.+++|+||||||||+|+++|++.++.+++
T Consensus 18 i~g~~~~~~~l~~l~~~-~~~~~--~----------~~----~-~~~~~-~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i 78 (254)
T 1ixz_A 18 VAGAEEAKEELKEIVEF-LKNPS--R----------FH----E-MGARI-PKGVLLVGPPGVGKTHLARAVAGEARVPFI 78 (254)
T ss_dssp CCSCHHHHHHHHHHHHH-HHCHH--H----------HH----H-TTCCC-CSEEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred hCCcHHHHHHHHHHHHH-HHCHH--H----------HH----H-cCCCC-CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 79999999999876642 22100 0 00 0 00111 356999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+++.++... +.+.. ...+..+|+.+.. ..++++||||||.+...+..............++.|+..|+|...
T Consensus 79 ~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~- 151 (254)
T 1ixz_A 79 TASGSDFVEM-FVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK- 151 (254)
T ss_dssp EEEHHHHHHS-CTTHH-HHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-
T ss_pred EeeHHHHHHH-HhhHH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-
Confidence 9999877632 44443 4456666765432 246899999999987653321111111223567788888885211
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
...++++++.+..+
T Consensus 152 ------------------~~~~i~~a~t~~p~------------------------------------------------ 165 (254)
T 1ixz_A 152 ------------------DTAIVVMAATNRPD------------------------------------------------ 165 (254)
T ss_dssp ------------------TCCEEEEEEESCGG------------------------------------------------
T ss_pred ------------------CCCEEEEEccCCch------------------------------------------------
Confidence 01123333333111
Q ss_pred hcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHH-HHHHHHhhcCCCCCHHHHHH
Q 005762 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA-LRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 515 ~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ea-l~~La~~a~~~~~GAR~Lr~ 591 (678)
.+.|.++. ||+..+.++.++.++..+|++.. . .+. .+.+++ +..|+... .++.+|+|++
T Consensus 166 -~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~----~---------~~~--~~~~~~~~~~la~~~--~G~~~~dl~~ 227 (254)
T 1ixz_A 166 -ILDPALLRPGRFDRQIAIDAPDVKGREQILRIH----A---------RGK--PLAEDVDLALLAKRT--PGFVGADLEN 227 (254)
T ss_dssp -GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH----H---------TTS--CBCTTCCHHHHHHTC--TTCCHHHHHH
T ss_pred -hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH----H---------cCC--CCCcccCHHHHHHHc--CCCCHHHHHH
Confidence 14555655 89999999999999999998631 1 122 233333 67777763 3555689999
Q ss_pred HHHHHHHHHHhc
Q 005762 592 ILESILTEAMYE 603 (678)
Q Consensus 592 iIE~il~~a~~~ 603 (678)
+++.+...+..+
T Consensus 228 ~~~~a~~~a~~~ 239 (254)
T 1ixz_A 228 LLNEAALLAARE 239 (254)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999988777654
No 50
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.59 E-value=1.4e-14 Score=140.46 Aligned_cols=184 Identities=22% Similarity=0.310 Sum_probs=126.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l----- 349 (678)
++|++.+++.|...+... ...+++|+||||||||++|+.+++.+
T Consensus 19 ~~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~ 67 (226)
T 2chg_A 19 VVGQDEVIQRLKGYVERK-------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGENW 67 (226)
T ss_dssp CCSCHHHHHHHHHHHHTT-------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGG
T ss_pred HcCcHHHHHHHHHHHhCC-------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHhcccc
Confidence 799999999887776410 12469999999999999999999886
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHHhhch--hHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHH
Q 005762 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF--NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (678)
Q Consensus 350 ~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~--~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~ 427 (678)
...++.+++..... ...+...+..... ......+.||||||+|.+... .++.|+++
T Consensus 68 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~ 125 (226)
T 2chg_A 68 RDNFIEMNASDERG--------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (226)
T ss_dssp GGGEEEEETTCTTC--------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred ccceEEeccccccC--------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--------------HHHHHHHH
Confidence 45788888875432 1122222221110 011246789999999998775 78889999
Q ss_pred HhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhc
Q 005762 428 LEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (678)
Q Consensus 428 LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v 507 (678)
++.. ..++.+|++++..
T Consensus 126 l~~~---------------------~~~~~~i~~~~~~------------------------------------------ 142 (226)
T 2chg_A 126 MEMY---------------------SKSCRFILSCNYV------------------------------------------ 142 (226)
T ss_dssp HHHT---------------------TTTEEEEEEESCG------------------------------------------
T ss_pred HHhc---------------------CCCCeEEEEeCCh------------------------------------------
Confidence 9831 1233455544421
Q ss_pred chhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHH
Q 005762 508 ESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGAR 587 (678)
Q Consensus 508 ~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR 587 (678)
..+.+.+.+|+. .+.|.+++.+++.+++... .. ..+ +.+++++++.|++.+ ..+.|
T Consensus 143 -------~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~----~~-------~~~--~~~~~~~~~~l~~~~---~g~~r 198 (226)
T 2chg_A 143 -------SRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEI----CE-------KEG--VKITEDGLEALIYIS---GGDFR 198 (226)
T ss_dssp -------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHH----HH-------HHT--CCBCHHHHHHHHHHH---TTCHH
T ss_pred -------hhcCHHHHHhCc-eeecCCCCHHHHHHHHHHH----HH-------HcC--CCCCHHHHHHHHHHc---CCCHH
Confidence 014566778887 7899999999998887742 11 113 348999999999875 66788
Q ss_pred HHHHHHHHHHH
Q 005762 588 GLRAILESILT 598 (678)
Q Consensus 588 ~Lr~iIE~il~ 598 (678)
.+.++++.+..
T Consensus 199 ~l~~~l~~~~~ 209 (226)
T 2chg_A 199 KAINALQGAAA 209 (226)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887654
No 51
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.59 E-value=8.3e-17 Score=190.21 Aligned_cols=223 Identities=22% Similarity=0.275 Sum_probs=149.6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccc-cccCCcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNV-ELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v-~~~~~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
.|+|++.+|+.|.+++.... ... +..... ..+..++||+||||||||+||++||+.++.+
T Consensus 478 di~gl~~vk~~l~~~v~~~~-------~~~------------~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPV-------EHP------------DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSS-------SSC------------TTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccchhhhhhHHHHHHhhh-------hch------------HHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47899999998877663110 000 000011 1245789999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcce
Q 005762 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (678)
Q Consensus 353 fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~ 432 (678)
|+.++++++. ..|+|+. +..+..+|+.+.. ..++||||||||++...+.......+.....+++.||..|++.
T Consensus 539 ~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~- 611 (806)
T 1ypw_A 539 FISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM- 611 (806)
T ss_dssp CCCCCCSSST-TCCTTTS-SHHHHHHHHHHHH----HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred EEEEechHhh-hhhcCcc-HHHHHHHHHHHHh----cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc-
Confidence 9999999988 4588888 6778888877654 3678999999999987654321111112345788888888852
Q ss_pred eecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhh
Q 005762 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (678)
Q Consensus 433 v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edL 512 (678)
....+++||+|+|..+
T Consensus 612 ------------------~~~~~v~vI~tTN~~~---------------------------------------------- 627 (806)
T 1ypw_A 612 ------------------STKKNVFIIGATNRPD---------------------------------------------- 627 (806)
T ss_dssp ----------------------CCBCCCCCBSCG----------------------------------------------
T ss_pred ------------------cccCCeEEEEecCCcc----------------------------------------------
Confidence 1335678888777432
Q ss_pred hhhcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHH
Q 005762 513 IAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (678)
Q Consensus 513 i~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr 590 (678)
.+.|.|+. ||+.++.|+.++.++..+|++..+. ...+. .+..++.|++.. .++..+.|+
T Consensus 628 ---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~-------------~~~~~-~~~~l~~la~~t--~g~sgadi~ 688 (806)
T 1ypw_A 628 ---IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR-------------KSPVA-KDVDLEFLAKMT--NGFSGADLT 688 (806)
T ss_dssp ---GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS-------------CC-----CCCCSCSCGGG--SSSCCHHHH
T ss_pred ---cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc-------------cCCCC-cccCHHHHHHhc--cccCHHHHH
Confidence 15677777 9999999999999999999986321 11100 111123344432 345567888
Q ss_pred HHHHHHHHHHHhcCC
Q 005762 591 AILESILTEAMYEIP 605 (678)
Q Consensus 591 ~iIE~il~~a~~~~p 605 (678)
.++......++.+..
T Consensus 689 ~l~~~a~~~a~~~~~ 703 (806)
T 1ypw_A 689 EICQRACKLAIRESI 703 (806)
T ss_dssp HHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877653
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.59 E-value=1.2e-14 Score=160.93 Aligned_cols=104 Identities=28% Similarity=0.345 Sum_probs=77.1
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC--
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN-- 350 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~-- 350 (678)
+.|+||+++++.+...+... .. +. .++.++||+||||||||++|+++|+.++
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~----~~-~~---------------------~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELI----KS-KK---------------------MAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHH----HT-TC---------------------CTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhccCHHHHHHHHHHHHHHH----Hh-CC---------------------CCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 44899999999988776411 11 10 1247899999999999999999999998
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhh
Q 005762 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (678)
Q Consensus 351 ~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~ 406 (678)
.+|+.++++++. ..|+|.. +. +.+.|..+.. +....++||||||||.+...+
T Consensus 91 ~~~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r 142 (456)
T 2c9o_A 91 VPFCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCE 142 (456)
T ss_dssp SCEEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC-
T ss_pred ceEEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhccccc
Confidence 899999999988 4577876 44 7788877622 122356788888887776543
No 53
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.58 E-value=2.8e-14 Score=160.18 Aligned_cols=230 Identities=15% Similarity=0.190 Sum_probs=143.3
Q ss_pred HHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHH
Q 005762 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (678)
Q Consensus 264 p~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAr 343 (678)
...+.+.|.+.|+||+.+++.+..++.. ..++||+||||||||++|+
T Consensus 13 ~~~l~~~l~~~ivGq~~~i~~l~~al~~---------------------------------~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 13 ISRLSSSLEKGLYERSHAIRLCLLAALS---------------------------------GESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHHH---------------------------------TCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhc---------------------------------CCeeEeecCchHHHHHHHH
Confidence 3457888889999999999988777641 3689999999999999999
Q ss_pred HHHHHhC--CCEEEEeccccccccccccchHHHH--HHHHHhh-chhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 344 TLARHVN--VPFVIADATTLTQAGYVGEDVESIL--YKLLAQA-EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 344 alA~~l~--~~fv~id~s~l~~sgyvG~~~~~~l--~~l~~~a-~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
+||+.++ .+|..+.+.-.+...++|....... ...+... .+.+ +.++|||||||+++.+.
T Consensus 60 aLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~------------- 124 (500)
T 3nbx_X 60 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPA------------- 124 (500)
T ss_dssp HGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSG--GGCSEEEEESGGGCCHH-------------
T ss_pred HHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCC--CcceeeeHHhHhhhcHH-------------
Confidence 9999984 4676666643222222231101000 1112111 1111 13569999999998876
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
+|+.|+++|+...+.+. |.. ......++|+++|...
T Consensus 125 -~q~~LL~~lee~~v~i~--G~~---------~~~~~~~iI~ATN~lp-------------------------------- 160 (500)
T 3nbx_X 125 -ILNTLLTAINERQFRNG--AHV---------EKIPMRLLVAASNELP-------------------------------- 160 (500)
T ss_dssp -HHHHHHHHHHSSEEECS--SSE---------EECCCCEEEEEESSCC--------------------------------
T ss_pred -HHHHHHHHHHHHhccCC--CCc---------CCcchhhhhhccccCC--------------------------------
Confidence 99999999996666541 211 1122223344444110
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCH-HHHHHHHhchHH--------------HHHHHHHHHHhcCCc
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE-DQLVKVLTEPKN--------------ALGKQYKRLFSMNNV 563 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~Lse-eeL~~Il~~~ln--------------~L~~q~~~~~~~~gv 563 (678)
+ ...+.+.+++||...+.++++++ ++...|+..... .-+..++... .
T Consensus 161 -----------e---~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~----~ 222 (500)
T 3nbx_X 161 -----------E---ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI----G 222 (500)
T ss_dssp -----------C---TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH----T
T ss_pred -----------C---ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC----C
Confidence 0 01255678899988899999987 677888875311 1112222222 2
Q ss_pred eeeeCHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHHHHHhc
Q 005762 564 KLHFTEKALRVIAKKAT-------AKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 564 ~l~~t~eal~~La~~a~-------~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
.+.++++++++|++... ....+.|.+..++...-..+..+
T Consensus 223 ~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 223 EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 35689999999987651 23567899988887665555554
No 54
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.57 E-value=2.3e-14 Score=147.83 Aligned_cols=222 Identities=25% Similarity=0.322 Sum_probs=134.9
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
+++ |+|++.+++.|...+.. |... . .+. . -.+.. +.+++|+||||||||+|+++|+..++
T Consensus 39 ~~~-i~g~~~~~~~l~~l~~~-~~~~---~---------~l~----~-~~~~~-~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 39 FKD-VAGAEEAKEELKEIVEF-LKNP---S---------RFH----E-MGARI-PKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GGG-SSSCHHHHHHHHHHHHH-HHCH---H---------HHH----H-TTCCC-CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHH-hCChHHHHHHHHHHHHH-HHCH---H---------HHH----H-cCCCC-CCeEEEECCCcChHHHHHHHHHHHcC
Confidence 443 89999999999876642 2110 0 000 0 00111 34599999999999999999999999
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 351 ~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
.+++.+++.++... +.+.. ...+..+|+.+.. ..++++||||||.+...+...............+.|+..|+|
T Consensus 99 ~~~i~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg 172 (278)
T 1iy2_A 99 VPFITASGSDFVEM-FVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 172 (278)
T ss_dssp CCEEEEEHHHHHHS-TTTHH-HHHHHHHHHHHHT----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT
T ss_pred CCEEEecHHHHHHH-HhhHH-HHHHHHHHHHHHh----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 99999999877632 33433 4455666665432 246899999999887543221001111123456667777764
Q ss_pred ceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchh
Q 005762 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (678)
Q Consensus 431 ~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~e 510 (678)
... ...++++++.+..+
T Consensus 173 g~~-------------------~~~~i~~a~t~~p~-------------------------------------------- 189 (278)
T 1iy2_A 173 FEK-------------------DTAIVVMAATNRPD-------------------------------------------- 189 (278)
T ss_dssp CCT-------------------TCCEEEEEEESCTT--------------------------------------------
T ss_pred CCC-------------------CCCEEEEEecCCch--------------------------------------------
Confidence 211 01123333333211
Q ss_pred hhhhhcCCccccc--ccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHH-HHHHHHhhcCCCCCHH
Q 005762 511 DLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA-LRVIAKKATAKNTGAR 587 (678)
Q Consensus 511 dLi~~g~~Pefl~--R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ea-l~~La~~a~~~~~GAR 587 (678)
-+.|.++. ||+..+.++.++.++..+|++.. . .+ +.+++++ +..|+... .++..|
T Consensus 190 -----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~----~---------~~--~~~~~~~~~~~la~~~--~G~~~~ 247 (278)
T 1iy2_A 190 -----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIH----A---------RG--KPLAEDVDLALLAKRT--PGFVGA 247 (278)
T ss_dssp -----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH----H---------TT--SCBCTTCCHHHHHHTC--TTCCHH
T ss_pred -----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH----H---------cc--CCCCcccCHHHHHHHc--CCCCHH
Confidence 03344443 89999999999999999998631 1 12 2244443 66777753 344468
Q ss_pred HHHHHHHHHHHHHHhc
Q 005762 588 GLRAILESILTEAMYE 603 (678)
Q Consensus 588 ~Lr~iIE~il~~a~~~ 603 (678)
+|+++++.+...+..+
T Consensus 248 dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 248 DLENLLNEAALLAARE 263 (278)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999888777643
No 55
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.2e-14 Score=154.28 Aligned_cols=240 Identities=13% Similarity=0.128 Sum_probs=146.2
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l--- 349 (678)
+.+.|.|...+.|..+|..... . ..+.+++|+||||||||++++.+++.+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~---~------------------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLM---S------------------------SQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---T------------------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHhc---C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3367888888888777753321 0 124789999999999999999999988
Q ss_pred -------CCCEEEEeccccccc---------ccccc-----chHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcc
Q 005762 350 -------NVPFVIADATTLTQA---------GYVGE-----DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAES 408 (678)
Q Consensus 350 -------~~~fv~id~s~l~~s---------gyvG~-----~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~ 408 (678)
...++.++|..+... .+.|. .....+...|..... ......||||||||.+. .
T Consensus 73 ~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~--- 146 (318)
T 3te6_A 73 SARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S--- 146 (318)
T ss_dssp TTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C---
T ss_pred hhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c---
Confidence 346889999875432 01111 113445555554311 12345799999999986 1
Q ss_pred ccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccc
Q 005762 409 LNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRA 488 (678)
Q Consensus 409 ~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~ 488 (678)
++++..|+++.+ ...+++++|+.+|..++..
T Consensus 147 ---------q~~L~~l~~~~~---------------------~~~s~~~vI~i~n~~d~~~------------------- 177 (318)
T 3te6_A 147 ---------EKILQYFEKWIS---------------------SKNSKLSIICVGGHNVTIR------------------- 177 (318)
T ss_dssp ---------THHHHHHHHHHH---------------------CSSCCEEEEEECCSSCCCH-------------------
T ss_pred ---------chHHHHHHhccc---------------------ccCCcEEEEEEecCcccch-------------------
Confidence 124444554432 1234567788777543211
Q ss_pred ccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc-eEEecCCcCHHHHHHHHhchHHHHHHHHHHHH---------
Q 005762 489 NMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP-ILVSLTALTEDQLVKVLTEPKNALGKQYKRLF--------- 558 (678)
Q Consensus 489 ~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~-~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~--------- 558 (678)
..+.+.+.+|+. .++.|++|+.+|+.+|++..+..+.+. .|
T Consensus 178 --------------------------~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~---~f~~~~~~~~~ 228 (318)
T 3te6_A 178 --------------------------EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKP---FHVKVNDKKEM 228 (318)
T ss_dssp --------------------------HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCC---EEEEECTTCCE
T ss_pred --------------------------hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcc---ccccccccccc
Confidence 012334556775 478999999999999998643222110 00
Q ss_pred ----------------hcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEccc
Q 005762 559 ----------------SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKTGSDGVDAVVVDEE 622 (678)
Q Consensus 559 ----------------~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~~~i~~v~v~~e 622 (678)
...+..+.++++|++++|++.....+.+|..-.+++..+.-+-.+...... . .-..++|+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~-~-~~~~~~i~~~ 306 (318)
T 3te6_A 229 TIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGG-L-QKGKLVVSQE 306 (318)
T ss_dssp EECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTT-E-ETTEECCSEE
T ss_pred cccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccC-C-CCCcEEeeHH
Confidence 000124578999999999976555778998777777776666443211100 0 1135666666
Q ss_pred ccC
Q 005762 623 SVG 625 (678)
Q Consensus 623 ~v~ 625 (678)
.+.
T Consensus 307 ~~~ 309 (318)
T 3te6_A 307 MVP 309 (318)
T ss_dssp CCT
T ss_pred HHH
Confidence 553
No 56
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.53 E-value=8.4e-15 Score=137.13 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=73.7
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---C
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---N 350 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---~ 350 (678)
.++|++.+.+.+...+... .....++||+||||||||++|++|++.. +
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------------------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~ 52 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------------------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ 52 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------------------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT
T ss_pred CceeCCHHHHHHHHHHHHH-----------------------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccC
Confidence 3689999888887776421 1124789999999999999999999987 6
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 351 ~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
.+|+ ++|..+... ......+. .+.+++|||||||.+... +|..|+.+|+
T Consensus 53 ~~~v-~~~~~~~~~--------~~~~~~~~-------~a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~ 101 (145)
T 3n70_A 53 GEFV-YRELTPDNA--------PQLNDFIA-------LAQGGTLVLSHPEHLTRE--------------QQYHLVQLQS 101 (145)
T ss_dssp SCCE-EEECCTTTS--------SCHHHHHH-------HHTTSCEEEECGGGSCHH--------------HHHHHHHHHH
T ss_pred CCEE-EECCCCCcc--------hhhhcHHH-------HcCCcEEEEcChHHCCHH--------------HHHHHHHHHh
Confidence 7999 999987642 11222332 335689999999999876 8999999995
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=7e-14 Score=145.23 Aligned_cols=185 Identities=24% Similarity=0.332 Sum_probs=125.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---- 350 (678)
++||+.+++.|...+... ...++||+||||||||++|+++|+.+.
T Consensus 27 ~~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~ 75 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKTG-------------------------------SMPHLLFAGPPGVGKTTAALALARELFGENW 75 (327)
T ss_dssp CCSCHHHHHHHHHHHHHT-------------------------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGH
T ss_pred hhCCHHHHHHHHHHHHcC-------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcc
Confidence 799999999988776411 124699999999999999999999873
Q ss_pred -CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 351 -VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 351 -~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
..++.+++++.... ......+...... ..+....+.||||||+|.+... .++.|++.|+
T Consensus 76 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~le 135 (327)
T 1iqp_A 76 RHNFLELNASDERGI----NVIREKVKEFART--KPIGGASFKIIFLDEADALTQD--------------AQQALRRTME 135 (327)
T ss_dssp HHHEEEEETTCHHHH----HTTHHHHHHHHHS--CCGGGCSCEEEEEETGGGSCHH--------------HHHHHHHHHH
T ss_pred cCceEEeeccccCch----HHHHHHHHHHHhh--CCcCCCCCeEEEEeCCCcCCHH--------------HHHHHHHHHH
Confidence 34788887754311 0111222222211 1122245789999999999776 8999999998
Q ss_pred cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcch
Q 005762 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (678)
Q Consensus 430 g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~ 509 (678)
.. ..++.||++++...
T Consensus 136 ~~---------------------~~~~~~i~~~~~~~------------------------------------------- 151 (327)
T 1iqp_A 136 MF---------------------SSNVRFILSCNYSS------------------------------------------- 151 (327)
T ss_dssp HT---------------------TTTEEEEEEESCGG-------------------------------------------
T ss_pred hc---------------------CCCCeEEEEeCCcc-------------------------------------------
Confidence 31 12334555444210
Q ss_pred hhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHH
Q 005762 510 SDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGL 589 (678)
Q Consensus 510 edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~L 589 (678)
.+.+.+.+|+. ++.|.+++.+++.+++... +...+ +.+++++++.|++.+ +.+.|.+
T Consensus 152 ------~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~-----------~~~~~--~~~~~~~~~~l~~~~---~g~~r~~ 208 (327)
T 1iqp_A 152 ------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYI-----------AENEG--LELTEEGLQAILYIA---EGDMRRA 208 (327)
T ss_dssp ------GSCHHHHHTEE-EEECCCCCHHHHHHHHHHH-----------HHTTT--CEECHHHHHHHHHHH---TTCHHHH
T ss_pred ------ccCHHHHhhCc-EEEecCCCHHHHHHHHHHH-----------HHhcC--CCCCHHHHHHHHHHC---CCCHHHH
Confidence 14456667776 6899999999999887641 11223 459999999999986 6678888
Q ss_pred HHHHHHHH
Q 005762 590 RAILESIL 597 (678)
Q Consensus 590 r~iIE~il 597 (678)
.++++...
T Consensus 209 ~~~l~~~~ 216 (327)
T 1iqp_A 209 INILQAAA 216 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.52 E-value=2e-13 Score=133.52 Aligned_cols=184 Identities=23% Similarity=0.301 Sum_probs=121.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
++|++.+++.|..++... ..+..++|+||+|||||++|+.+++.+...
T Consensus 25 ~~g~~~~~~~l~~~l~~~------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~ 74 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLG------------------------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 74 (250)
T ss_dssp CCSCHHHHHHHHHHHHHT------------------------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTC
T ss_pred HhCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 799999999988777411 012469999999999999999999887432
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
++.++... ......+..++...........+.+|||||+|.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~----- 141 (250)
T 1njg_A 75 ITATPCGVCDNCREIEQGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH----- 141 (250)
T ss_dssp SCSSCCSCSHHHHHHHTTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-----
T ss_pred CCCCCCcccHHHHHHhccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-----
Confidence 12222211 1112334455544322112235679999999998765
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.++.|++.|+.. ..++.+|++++...
T Consensus 142 ---------~~~~l~~~l~~~---------------------~~~~~~i~~t~~~~------------------------ 167 (250)
T 1njg_A 142 ---------SFNALLKTLEEP---------------------PEHVKFLLATTDPQ------------------------ 167 (250)
T ss_dssp ---------HHHHHHHHHHSC---------------------CTTEEEEEEESCGG------------------------
T ss_pred ---------HHHHHHHHHhcC---------------------CCceEEEEEeCChH------------------------
Confidence 888999999731 12345555544210
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+.+|+ ..+.|++|+.+++.+++... . ...+ +.++++
T Consensus 168 -------------------------~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~----~-------~~~~--~~~~~~ 208 (250)
T 1njg_A 168 -------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHI----L-------NEEH--IAHEPR 208 (250)
T ss_dssp -------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHH----H-------HHTT--CCBCHH
T ss_pred -------------------------hCCHHHHHHh-hhccCCCCCHHHHHHHHHHH----H-------HhcC--CCCCHH
Confidence 1334455664 57899999999999987742 1 1123 458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+++.|++.+ ....|.+.++++.++
T Consensus 209 ~~~~l~~~~---~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 209 ALQLLARAA---EGSLRDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999986 557888888887764
No 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.50 E-value=3.8e-14 Score=146.73 Aligned_cols=185 Identities=23% Similarity=0.321 Sum_probs=126.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l----- 349 (678)
++||+.+++.|...+.. . ...++||+||||||||++|+++|+.+
T Consensus 19 ~~g~~~~~~~l~~~l~~--------~-----------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~ 67 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVER--------K-----------------------NIPHLLFSGPPGTGKTATAIALARDLFGENW 67 (319)
T ss_dssp SCSCHHHHHHHHTTTTT--------T-----------------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHhC--------C-----------------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcc
Confidence 79999999988666531 0 12469999999999999999999987
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 350 ~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
+.+++.+++++..... .....+........ +....+.||||||+|.+... .++.|++.|+
T Consensus 68 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~le 127 (319)
T 2chq_A 68 RDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRTME 127 (319)
T ss_dssp HHHCEEEETTSTTCTT----TSSHHHHHHHHSCC--SSSCCCEEEEEETGGGSCHH--------------HHHTTGGGTS
T ss_pred cCCeEEEeCccccChH----HHHHHHHHHHhcCC--CCCCCceEEEEeCCCcCCHH--------------HHHHHHHHHH
Confidence 3468889987653211 11222222221111 11235689999999999776 7888999987
Q ss_pred cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcch
Q 005762 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (678)
Q Consensus 430 g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~ 509 (678)
.. ..+++||++++...
T Consensus 128 ~~---------------------~~~~~~i~~~~~~~------------------------------------------- 143 (319)
T 2chq_A 128 MY---------------------SKSCRFILSCNYVS------------------------------------------- 143 (319)
T ss_dssp SS---------------------SSSEEEEEEESCGG-------------------------------------------
T ss_pred hc---------------------CCCCeEEEEeCChh-------------------------------------------
Confidence 31 12345555544210
Q ss_pred hhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHH
Q 005762 510 SDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGL 589 (678)
Q Consensus 510 edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~L 589 (678)
.+.+.+.+|+. ++.|.+++.+++.+++... +...+ +.+++++++.|+..+ +.+.|.+
T Consensus 144 ------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~-----------~~~~~--~~i~~~~l~~l~~~~---~G~~r~~ 200 (319)
T 2chq_A 144 ------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEI-----------CEKEG--VKITEDGLEALIYIS---GGDFRKA 200 (319)
T ss_dssp ------GSCHHHHTTCE-EEECCCCCHHHHHHHHHHH-----------HHTTC--CCBCHHHHHHHHHTT---TTCHHHH
T ss_pred ------hcchHHHhhCe-EEEecCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---CCCHHHH
Confidence 15667778876 7899999999998887641 11223 458999999999764 6678888
Q ss_pred HHHHHHHH
Q 005762 590 RAILESIL 597 (678)
Q Consensus 590 r~iIE~il 597 (678)
.+.++...
T Consensus 201 ~~~l~~~~ 208 (319)
T 2chq_A 201 INALQGAA 208 (319)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 60
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.49 E-value=1.9e-13 Score=143.69 Aligned_cols=172 Identities=17% Similarity=0.280 Sum_probs=112.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccch
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 402 (678)
.+++|+||||||||++|+++++.+ +.+++.+++.++... +.+....... ..|... ...+.||||||||.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~~~~-----~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA-MVEHLKKGTI-NEFRNM-----YKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHHHHHHTCH-HHHHHH-----HHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-HHHHHHcCcH-HHHHHH-----hcCCCEEEEcCcccc
Confidence 689999999999999999999998 889999999876421 1111000000 111110 124689999999998
Q ss_pred hhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCc
Q 005762 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (678)
Q Consensus 403 ~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF 482 (678)
..+. ..|+.|+..++... ..+..+|++++...
T Consensus 111 ~~~~------------~~~~~l~~~l~~~~--------------------~~~~~iii~~~~~~---------------- 142 (324)
T 1l8q_A 111 SGKE------------RTQIEFFHIFNTLY--------------------LLEKQIILASDRHP---------------- 142 (324)
T ss_dssp TTCH------------HHHHHHHHHHHHHH--------------------HTTCEEEEEESSCG----------------
T ss_pred cCCh------------HHHHHHHHHHHHHH--------------------HCCCeEEEEecCCh----------------
Confidence 7531 16677777765210 01112233332110
Q ss_pred CcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhc
Q 005762 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (678)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~ 560 (678)
.++ ..+.+.|.+||. .++.|++ +.+++.+|+.... . .
T Consensus 143 ---------------------------~~l--~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~----~-------~ 181 (324)
T 1l8q_A 143 ---------------------------QKL--DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKL----K-------E 181 (324)
T ss_dssp ---------------------------GGC--TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHH----H-------H
T ss_pred ---------------------------HHH--HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHH----H-------h
Confidence 000 026677888886 6789999 9999999987521 1 1
Q ss_pred CCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 005762 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (678)
Q Consensus 561 ~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~ 599 (678)
.+ +.++++++++|+++. .++|.|.++++.++..
T Consensus 182 ~~--~~l~~~~l~~l~~~~----g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 182 FN--LELRKEVIDYLLENT----KNVREIEGKIKLIKLK 214 (324)
T ss_dssp TT--CCCCHHHHHHHHHHC----SSHHHHHHHHHHHHHH
T ss_pred cC--CCCCHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence 23 468999999999985 6789999999887765
No 61
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=6.7e-14 Score=147.41 Aligned_cols=189 Identities=19% Similarity=0.210 Sum_probs=124.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~---- 350 (678)
++|++++++.|..++... ...++||+||||||||++|+++|+.++
T Consensus 39 i~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~ 87 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKSA-------------------------------NLPHMLFYGPPGTGKTSTILALTKELYGPDL 87 (353)
T ss_dssp CCSCCTTHHHHHHHTTCT-------------------------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHhcC-------------------------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 799999999887766300 124699999999999999999998864
Q ss_pred --CCEEEEeccccccccccccchHHHHHHHHHhhch--------hHhhhcCcEEEEcCccchhhhhccccccCCCchhHH
Q 005762 351 --VPFVIADATTLTQAGYVGEDVESILYKLLAQAEF--------NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (678)
Q Consensus 351 --~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~--------~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~v 420 (678)
..++.+++++....+++ ...+......... ........||||||+|.+... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~--------------~ 149 (353)
T 1sxj_D 88 MKSRILELNASDERGISIV----REKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD--------------A 149 (353)
T ss_dssp HTTSEEEECSSSCCCHHHH----TTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH--------------H
T ss_pred cccceEEEccccccchHHH----HHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH--------------H
Confidence 46888888765321111 1111111111000 000124469999999999876 8
Q ss_pred HHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhH
Q 005762 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (678)
Q Consensus 421 q~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~ 500 (678)
++.|++.|+... .+..||++++...
T Consensus 150 ~~~Ll~~le~~~---------------------~~~~~il~~~~~~---------------------------------- 174 (353)
T 1sxj_D 150 QSALRRTMETYS---------------------GVTRFCLICNYVT---------------------------------- 174 (353)
T ss_dssp HHHHHHHHHHTT---------------------TTEEEEEEESCGG----------------------------------
T ss_pred HHHHHHHHHhcC---------------------CCceEEEEeCchh----------------------------------
Confidence 899999998310 1223444443210
Q ss_pred HHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhc
Q 005762 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (678)
Q Consensus 501 ~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~ 580 (678)
.+.|.+.+|+. .+.|.+++.+++.+++... +...+ +.++++++++|++.+.
T Consensus 175 ---------------~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~-----------~~~~~--~~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 175 ---------------RIIDPLASQCS-KFRFKALDASNAIDRLRFI-----------SEQEN--VKCDDGVLERILDISA 225 (353)
T ss_dssp ---------------GSCHHHHHHSE-EEECCCCCHHHHHHHHHHH-----------HHTTT--CCCCHHHHHHHHHHTS
T ss_pred ---------------hCcchhhccCc-eEEeCCCCHHHHHHHHHHH-----------HHHhC--CCCCHHHHHHHHHHcC
Confidence 14566777775 6799999999999887741 11223 4589999999999863
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 005762 581 AKNTGARGLRAILESILTE 599 (678)
Q Consensus 581 ~~~~GAR~Lr~iIE~il~~ 599 (678)
.+.|.+.++++.....
T Consensus 226 ---G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 226 ---GDLRRGITLLQSASKG 241 (353)
T ss_dssp ---SCHHHHHHHHHHTHHH
T ss_pred ---CCHHHHHHHHHHHHHh
Confidence 5688888888876543
No 62
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=3.3e-13 Score=143.73 Aligned_cols=204 Identities=19% Similarity=0.233 Sum_probs=132.3
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l--- 349 (678)
+.++|++..++.|...+..... . ....+++|+||||||||++|+.+++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~-----------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----N-----------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----T-----------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----C-----------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5589999999999888753210 0 013689999999999999999999988
Q ss_pred --------CCCEEEEeccccc-cc----------------cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhh
Q 005762 350 --------NVPFVIADATTLT-QA----------------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (678)
Q Consensus 350 --------~~~fv~id~s~l~-~s----------------gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 404 (678)
+.+++.++|.... .. .+.|......+..++... . ..+.||||||+|.+..
T Consensus 73 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l----~-~~~~vlilDEi~~l~~ 147 (384)
T 2qby_B 73 KKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT----R-NIRAIIYLDEVDTLVK 147 (384)
T ss_dssp HHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH----S-SSCEEEEEETTHHHHH
T ss_pred hhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh----c-cCCCEEEEECHHHhcc
Confidence 8899999987643 10 011222122222222211 1 1223999999999875
Q ss_pred hhccccccCCCchhHHHHH-HHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcC
Q 005762 405 KAESLNISRDVSGEGVQQA-LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFG 483 (678)
Q Consensus 405 ~~~~~~~~~d~s~~~vq~~-LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~ 483 (678)
.. .++. |..+++-. .++.||++++..++
T Consensus 148 ~~-------------~~~~~l~~l~~~~----------------------~~~~iI~~t~~~~~---------------- 176 (384)
T 2qby_B 148 RR-------------GGDIVLYQLLRSD----------------------ANISVIMISNDINV---------------- 176 (384)
T ss_dssp ST-------------TSHHHHHHHHTSS----------------------SCEEEEEECSSTTT----------------
T ss_pred CC-------------CCceeHHHHhcCC----------------------cceEEEEEECCCch----------------
Confidence 41 1233 34443310 45667776663210
Q ss_pred cccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCc
Q 005762 484 APVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNV 563 (678)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv 563 (678)
...+.+.+.+||...+.|++|+.+++.+|+...+ . ..+ .
T Consensus 177 ------------------------------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~----~---~~~----~ 215 (384)
T 2qby_B 177 ------------------------------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA----E---YGL----I 215 (384)
T ss_dssp ------------------------------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH----H---HTS----C
T ss_pred ------------------------------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH----H---hhc----c
Confidence 0115566777887799999999999999988521 1 101 1
Q ss_pred eeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 005762 564 KLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (678)
Q Consensus 564 ~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a 600 (678)
...+++++++.|++.+.....++|.+.++++.+...+
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 216 KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 2358899999999987544567888888888766443
No 63
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.48 E-value=2.2e-13 Score=156.15 Aligned_cols=141 Identities=19% Similarity=0.302 Sum_probs=86.0
Q ss_pred hHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccC---CCCCeEEEecCcceEEec
Q 005762 385 NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKH---PRGDSIQMDTKDILFICG 461 (678)
Q Consensus 385 ~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~---~~~~~i~idtsNilfI~t 461 (678)
.+..+.+++||||||+.+.+. +|+.|+++|+...+.+.+...... ..... -..++.+|++
T Consensus 196 ~~~~a~~gvL~LDEi~~l~~~--------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~---~p~~~~vI~a 258 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIATLSLK--------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEP---VPCDFVLVAA 258 (604)
T ss_dssp HHHHTTTSEEEETTGGGSCHH--------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSC---EECCCEEEEE
T ss_pred eeeecCCCEEEEechhhCCHH--------------HHHHHHHHHHcCcEEecccccccccccCCCCc---cceeEEEEEe
Confidence 345678899999999999776 999999999955554322111000 00011 1235667777
Q ss_pred CCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc---eEEecCCcC---
Q 005762 462 GAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP---ILVSLTALT--- 535 (678)
Q Consensus 462 Gaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~---~iv~f~~Ls--- 535 (678)
+|.. + ...|.|+|++||+ ..+.|.+..
T Consensus 259 tn~~-------------------------------------~----------~~~l~~~l~~R~~v~~i~i~l~~~~~~~ 291 (604)
T 3k1j_A 259 GNLD-------------------------------------T----------VDKMHPALRSRIRGYGYEVYMRTTMPDT 291 (604)
T ss_dssp ECHH-------------------------------------H----------HHHSCHHHHHHHHHHSEEEECCSEEECC
T ss_pred cCHH-------------------------------------H----------HhhcCHHHHHHhhccceEeeccccccCC
Confidence 7631 0 0127889999997 566776543
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhc--CCC-----CCHHHHHHHHHHHH
Q 005762 536 EDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT--AKN-----TGARGLRAILESIL 597 (678)
Q Consensus 536 eeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~--~~~-----~GAR~Lr~iIE~il 597 (678)
.+.+..++. .+.++ +...+....+++++++.|.++++ ... ...|.|.++++...
T Consensus 292 ~~~~~~~l~----~~~~~----~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~ 352 (604)
T 3k1j_A 292 IENRRKLVQ----FVAQE----VKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAG 352 (604)
T ss_dssp HHHHHHHHH----HHHHH----HHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHH----HhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHH
Confidence 344444443 22222 22223445799999999999865 221 25888888887654
No 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=4.5e-13 Score=159.23 Aligned_cols=190 Identities=21% Similarity=0.306 Sum_probs=115.9
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.|+. |||++..++.+...+.+ ..+.++||+||||||||++|+.+|+.+
T Consensus 168 ~ld~-viGr~~~i~~l~~~l~~-------------------------------~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 168 KLDP-VIGRDEEIRRVIQILLR-------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CSCC-CCSCHHHHHHHHHHHHC-------------------------------SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcc-cCCcHHHHHHHHHHHhc-------------------------------CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3444 89999999888776631 024689999999999999999999987
Q ss_pred ----------CCCEEEEecccccc-ccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 350 ----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 350 ----------~~~fv~id~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
+.+++.++++.+.. ..|.|.. +..+..++..... ...+.||||||+|.+...... ....
T Consensus 216 ~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~------~g~~ 285 (854)
T 1qvr_A 216 VKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQ---SQGEVILFIDELHTVVGAGKA------EGAV 285 (854)
T ss_dssp HHTCSCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHT---TCSSEEEEECCC-------------------
T ss_pred hcCCCchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHh---cCCCeEEEEecHHHHhccCCc------cchH
Confidence 78999999998763 3466654 5566666655432 124679999999999764221 1123
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
++++.|+.+++.. ++.+|++++.....
T Consensus 286 ~~~~~L~~~l~~~-----------------------~i~~I~at~~~~~~------------------------------ 312 (854)
T 1qvr_A 286 DAGNMLKPALARG-----------------------ELRLIGATTLDEYR------------------------------ 312 (854)
T ss_dssp ------HHHHHTT-----------------------CCCEEEEECHHHHH------------------------------
T ss_pred HHHHHHHHHHhCC-----------------------CeEEEEecCchHHh------------------------------
Confidence 4778888888721 23455555422100
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
...+.|.|.+||+. +.|++++.+++.+|+.. +...|.. ...+.++++++..+++.
T Consensus 313 ---------------~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~----~~~~~~~-----~~~~~i~~~al~~~~~l 367 (854)
T 1qvr_A 313 ---------------EIEKDPALERRFQP-VYVDEPTVEETISILRG----LKEKYEV-----HHGVRISDSAIIAAATL 367 (854)
T ss_dssp ---------------HHTTCTTTCSCCCC-EEECCCCHHHHHHHHHH----HHHHHHH-----HTTCEECHHHHHHHHHH
T ss_pred ---------------hhccCHHHHhCCce-EEeCCCCHHHHHHHHHh----hhhhhhh-----hcCCCCCHHHHHHHHHH
Confidence 01257889999986 89999999999999974 4444433 23456899999998886
Q ss_pred h
Q 005762 579 A 579 (678)
Q Consensus 579 a 579 (678)
+
T Consensus 368 s 368 (854)
T 1qvr_A 368 S 368 (854)
T ss_dssp H
T ss_pred H
Confidence 5
No 65
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.47 E-value=5.3e-14 Score=133.22 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=103.8
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh----
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---- 349 (678)
.++|++..++.+...+.. ....+++|+||||||||++|+.+++.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~-------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~ 71 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR-------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGE 71 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTC
T ss_pred ccccchHHHHHHHHHHhc-------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 379999988888776531 023689999999999999999999987
Q ss_pred ------CCCEEEEeccccccc-cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHH
Q 005762 350 ------NVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (678)
Q Consensus 350 ------~~~fv~id~s~l~~s-gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~ 422 (678)
+.+++.+++..+... .+.+.. ...+..++.... ....+.||||||+|.+...... . ....+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~-~-----~~~~~~~ 141 (195)
T 1jbk_A 72 VPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKA-D-----GAMDAGN 141 (195)
T ss_dssp SCGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHHH---HSTTTEEEEEETGGGGTT------------CCCCHH
T ss_pred CchhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHHh---hcCCCeEEEEeCHHHHhccCcc-c-----chHHHHH
Confidence 678899998876521 222222 334444443321 1224569999999999754211 0 1112677
Q ss_pred HHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHH
Q 005762 423 ALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSS 502 (678)
Q Consensus 423 ~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ 502 (678)
.|+.+++. .++.+|++++...+..
T Consensus 142 ~l~~~~~~-----------------------~~~~~i~~~~~~~~~~--------------------------------- 165 (195)
T 1jbk_A 142 MLKPALAR-----------------------GELHCVGATTLDEYRQ--------------------------------- 165 (195)
T ss_dssp HHHHHHHT-----------------------TSCCEEEEECHHHHHH---------------------------------
T ss_pred HHHHhhcc-----------------------CCeEEEEeCCHHHHHH---------------------------------
Confidence 78877762 1345566555221110
Q ss_pred HHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHH
Q 005762 503 LLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVL 543 (678)
Q Consensus 503 ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il 543 (678)
. ..+.+.|.+||. .+.|.+++.+++.+|+
T Consensus 166 ---~--------~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 ---Y--------IEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ---H--------TTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred ---H--------HhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 0 115677888998 5799999999988875
No 66
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=3.2e-13 Score=143.13 Aligned_cols=214 Identities=19% Similarity=0.203 Sum_probs=134.8
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l--- 349 (678)
+.++|++..++.|...+... .. .....+++|+||||||||++|+.+++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~--------~~-------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPA--------LR-------------------GEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGG--------TS-------------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH--------Hc-------------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45899999999887766310 00 0124789999999999999999999988
Q ss_pred ------CCCEEEEeccccccc---------------cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcc
Q 005762 350 ------NVPFVIADATTLTQA---------------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAES 408 (678)
Q Consensus 350 ------~~~fv~id~s~l~~s---------------gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~ 408 (678)
+.+++.++|...... ...|......+..++.... ....+.||||||+|.+....
T Consensus 72 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~-- 146 (387)
T 2v1u_A 72 ASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRP-- 146 (387)
T ss_dssp HHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHST--
T ss_pred HhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccC--
Confidence 788999998764321 0112222222223222211 01235699999999987541
Q ss_pred ccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEe-cCcceEEecCCCcCHHHHHHhhcccCCCCcCcccc
Q 005762 409 LNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMD-TKDILFICGGAFVDLEKTISERRQDSSIGFGAPVR 487 (678)
Q Consensus 409 ~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~id-tsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~ 487 (678)
..++.|+.+++-... .. ..++.+|++++..++
T Consensus 147 ----------~~~~~l~~l~~~~~~-----------------~~~~~~~~~I~~t~~~~~-------------------- 179 (387)
T 2v1u_A 147 ----------GGQDLLYRITRINQE-----------------LGDRVWVSLVGITNSLGF-------------------- 179 (387)
T ss_dssp ----------THHHHHHHHHHGGGC-----------------C-----CEEEEECSCSTT--------------------
T ss_pred ----------CCChHHHhHhhchhh-----------------cCCCceEEEEEEECCCch--------------------
Confidence 034445554441000 00 235567776653210
Q ss_pred cccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceee
Q 005762 488 ANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLH 566 (678)
Q Consensus 488 ~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~ 566 (678)
...+.+.+.+|+.. .+.|++|+.+++.+|+...+. ..+ . ...
T Consensus 180 --------------------------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~-------~~~--~--~~~ 222 (387)
T 2v1u_A 180 --------------------------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAE-------EAF--N--PGV 222 (387)
T ss_dssp --------------------------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH-------HHB--C--TTT
T ss_pred --------------------------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH-------hhc--c--CCC
Confidence 01155667778875 899999999999999885311 111 1 235
Q ss_pred eCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHh
Q 005762 567 FTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (678)
Q Consensus 567 ~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~ 602 (678)
+++++++.|++++......+|.+.++++.++..+..
T Consensus 223 ~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 223 LDPDVVPLCAALAAREHGDARRALDLLRVAGEIAER 258 (387)
T ss_dssp BCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 889999999999865567799999999988765543
No 67
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.45 E-value=7.3e-13 Score=140.51 Aligned_cols=184 Identities=23% Similarity=0.302 Sum_probs=122.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCC--
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~-- 352 (678)
++||+.+++.|..++... . .+..+||+||+|||||++|+++|+.++..
T Consensus 18 ~vg~~~~~~~L~~~l~~~-------~-----------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~ 67 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLG-------R-----------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCETG 67 (373)
T ss_dssp SCSCHHHHHHHHHHHHHT-------C-----------------------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTC
T ss_pred ccCcHHHHHHHHHHHHhC-------C-----------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 899999999988877411 0 12458999999999999999999988541
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhcccc
Q 005762 353 ----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 353 ----------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
++.++.... .+. ..+..++...........+.||||||+|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~----- 134 (373)
T 1jr3_A 68 ITATPCGVCDNCREIEQGRFVDLIEIDAASR-----TKV---EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH----- 134 (373)
T ss_dssp SCSSCCSSSHHHHHHHTSCCSSCEEEETTCS-----CCS---SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-----
T ss_pred CCCCCCcccHHHHHHhccCCCceEEeccccc-----CCH---HHHHHHHHHHhhccccCCeEEEEEECcchhcHH-----
Confidence 233333211 111 123344433322111234579999999999765
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.++.|++.|+.. ..+++||++++...
T Consensus 135 ---------~~~~Ll~~le~~---------------------~~~~~~Il~~~~~~------------------------ 160 (373)
T 1jr3_A 135 ---------SFNALLKTLEEP---------------------PEHVKFLLATTDPQ------------------------ 160 (373)
T ss_dssp ---------HHHHHHHHHHSC---------------------CSSEEEEEEESCGG------------------------
T ss_pred ---------HHHHHHHHHhcC---------------------CCceEEEEEeCChH------------------------
Confidence 889999999831 12345555443110
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
.+.+.+.+|+ .++.|.+++.+++.+++... .+ ..+ +.++++
T Consensus 161 -------------------------~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~----~~-------~~~--~~~~~~ 201 (373)
T 1jr3_A 161 -------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHI----LN-------EEH--IAHEPR 201 (373)
T ss_dssp -------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHH----HH-------HHT--CCBCHH
T ss_pred -------------------------hCcHHHHhhe-eEeeCCCCCHHHHHHHHHHH----HH-------HcC--CCCCHH
Confidence 1344556666 57899999999999888742 11 113 358999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il 597 (678)
+++.|++.+ +.+.|.+.++++..+
T Consensus 202 a~~~l~~~~---~G~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 202 ALQLLARAA---EGSLRDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHS---SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHC---CCCHHHHHHHHHHHH
Confidence 999999986 567888888888765
No 68
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=9.7e-13 Score=147.95 Aligned_cols=205 Identities=17% Similarity=0.184 Sum_probs=127.1
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
+++ |+|++.+++.|...+....... ....+. .|. .......++||+||||||||++|+++|+.++
T Consensus 38 ~~d-liG~~~~~~~L~~~l~~~~~~~-~~~~~~-~g~------------~~~~~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 38 LQQ-VCGNKGSVMKLKNWLANWENSK-KNSFKH-AGK------------DGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp GGG-CCSCHHHHHHHHHHHHTHHHHH-HTTTCC-CCT------------TSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHH-hcCCHHHHHHHHHHHHHhHhhc-hhhccc-cCc------------cCCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344 8999999999999886432211 011110 010 0001246899999999999999999999999
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHHhh------chhH--------hhhcCcEEEEcCccchhhhhccccccCCCc
Q 005762 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQA------EFNV--------EAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (678)
Q Consensus 351 ~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a------~~~v--------~~a~~gILfIDEIDkl~~~~~~~~~~~d~s 416 (678)
.+++.++++++... ..+...+... ...+ ....+.||||||||.+.....
T Consensus 103 ~~~i~in~s~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------- 165 (516)
T 1sxj_A 103 YDILEQNASDVRSK--------TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------- 165 (516)
T ss_dssp CEEEEECTTSCCCH--------HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST---------
T ss_pred CCEEEEeCCCcchH--------HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH---------
Confidence 99999999886531 1111111100 0000 123567999999999876411
Q ss_pred hhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCc
Q 005762 417 GEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTD 496 (678)
Q Consensus 417 ~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~ 496 (678)
+..+.|+++++.. +..||++++....
T Consensus 166 --~~l~~L~~~l~~~-----------------------~~~iIli~~~~~~----------------------------- 191 (516)
T 1sxj_A 166 --GGVGQLAQFCRKT-----------------------STPLILICNERNL----------------------------- 191 (516)
T ss_dssp --THHHHHHHHHHHC-----------------------SSCEEEEESCTTS-----------------------------
T ss_pred --HHHHHHHHHHHhc-----------------------CCCEEEEEcCCCC-----------------------------
Confidence 2567888888721 1122332331100
Q ss_pred hHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHH
Q 005762 497 AAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIA 576 (678)
Q Consensus 497 ~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La 576 (678)
...+.| .|+...+.|.+++.+++.+++... .. ..+ +.+++++++.|+
T Consensus 192 -------------------~~l~~l-~~r~~~i~f~~~~~~~~~~~L~~i----~~-------~~~--~~i~~~~l~~la 238 (516)
T 1sxj_A 192 -------------------PKMRPF-DRVCLDIQFRRPDANSIKSRLMTI----AI-------REK--FKLDPNVIDRLI 238 (516)
T ss_dssp -------------------STTGGG-TTTSEEEECCCCCHHHHHHHHHHH----HH-------HHT--CCCCTTHHHHHH
T ss_pred -------------------ccchhh-HhceEEEEeCCCCHHHHHHHHHHH----HH-------HcC--CCCCHHHHHHHH
Confidence 011233 344557899999999999887642 11 113 348899999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHH
Q 005762 577 KKATAKNTGARGLRAILESIL 597 (678)
Q Consensus 577 ~~a~~~~~GAR~Lr~iIE~il 597 (678)
+.+ ..+.|.+.++++.+.
T Consensus 239 ~~s---~GdiR~~i~~L~~~~ 256 (516)
T 1sxj_A 239 QTT---RGDIRQVINLLSTIS 256 (516)
T ss_dssp HHT---TTCHHHHHHHHTHHH
T ss_pred HHc---CCcHHHHHHHHHHHH
Confidence 885 556888888887654
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=8.7e-13 Score=140.30 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=135.6
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCC--cEEEEcCCCcHHHHHHHHHHHHh-
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKS--NVLLMGPTGSGKTLLAKTLARHV- 349 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~--~iLL~GPpGtGKT~LAralA~~l- 349 (678)
+.++|++..++.|...+..... .. ... +++|+||||||||++++.+++.+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~----~~-----------------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR----NP-----------------------GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH----ST-----------------------TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHc----CC-----------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3489999999999888753211 00 123 79999999999999999999998
Q ss_pred ---CCCEEEEeccccccc-----------c----ccccchHHHHHHHHHhhchhHh-hhcCcEEEEcCccchhhhhcccc
Q 005762 350 ---NVPFVIADATTLTQA-----------G----YVGEDVESILYKLLAQAEFNVE-AAQQGMVYIDEVDKITKKAESLN 410 (678)
Q Consensus 350 ---~~~fv~id~s~l~~s-----------g----yvG~~~~~~l~~l~~~a~~~v~-~a~~gILfIDEIDkl~~~~~~~~ 410 (678)
+.+++.++|...... + ..+......+..+... +. ...+.||||||+|.+...
T Consensus 70 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~vlilDE~~~l~~~----- 140 (389)
T 1fnn_A 70 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEH----LRERDLYMFLVLDDAFNLAPD----- 140 (389)
T ss_dssp TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH----HHHTTCCEEEEEETGGGSCHH-----
T ss_pred hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHH----HhhcCCeEEEEEECccccchH-----
Confidence 568899998754311 0 0111111111111111 11 123569999999998544
Q ss_pred ccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCccccccc
Q 005762 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (678)
Q Consensus 411 ~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~ 490 (678)
.+..|+.+++.... ....++.||++++..++
T Consensus 141 ---------~~~~L~~~~~~~~~-----------------~~~~~~~iI~~~~~~~~----------------------- 171 (389)
T 1fnn_A 141 ---------ILSTFIRLGQEADK-----------------LGAFRIALVIVGHNDAV----------------------- 171 (389)
T ss_dssp ---------HHHHHHHHTTCHHH-----------------HSSCCEEEEEEESSTHH-----------------------
T ss_pred ---------HHHHHHHHHHhCCC-----------------CCcCCEEEEEEECCchH-----------------------
Confidence 88899999862100 00124566665542211
Q ss_pred ccCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCH
Q 005762 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569 (678)
Q Consensus 491 ~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~ 569 (678)
. ..+.+.+.+|+.. .+.|++|+.+++.+++..... ..+ ....+++
T Consensus 172 -------------~----------~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~-------~~~----~~~~~~~ 217 (389)
T 1fnn_A 172 -------------L----------NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK-------AGL----AEGSYSE 217 (389)
T ss_dssp -------------H----------HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH-------HHB----CTTSSCH
T ss_pred -------------H----------HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH-------hhc----CCCCCCH
Confidence 0 0144555666665 789999999999999875211 111 1225899
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHHHHHHHHHHHHh
Q 005762 570 KALRVIAKKATAK------NTGARGLRAILESILTEAMY 602 (678)
Q Consensus 570 eal~~La~~a~~~------~~GAR~Lr~iIE~il~~a~~ 602 (678)
++++.|++.++.. ..+.|.+.++++.++..+..
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 218 DILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999998654 56789999999888766654
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.44 E-value=1.5e-14 Score=135.30 Aligned_cols=96 Identities=19% Similarity=0.330 Sum_probs=73.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
++|++.+++.+...+... . ....++||+||||||||++|+++++.+. +|+
T Consensus 6 ~iG~s~~~~~l~~~~~~~----~-------------------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAA----A-------------------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp --CCCHHHHHHHHHHHHH----H-------------------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred ceeCCHHHHHHHHHHHHH----h-------------------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 789999998887777421 0 1246899999999999999999999888 999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhc
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg 430 (678)
.++|+++... .....+.. +.+++|||||||.+... .|..|+++|+.
T Consensus 56 ~~~~~~~~~~---------~~~~~~~~-------a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~ 101 (143)
T 3co5_A 56 SPARVEYLID---------MPMELLQK-------AEGGVLYVGDIAQYSRN--------------IQTGITFIIGK 101 (143)
T ss_dssp CCSSTTHHHH---------CHHHHHHH-------TTTSEEEEEECTTCCHH--------------HHHHHHHHHHH
T ss_pred EechhhCChH---------hhhhHHHh-------CCCCeEEEeChHHCCHH--------------HHHHHHHHHHh
Confidence 9999876531 12333333 35689999999999876 89999999983
No 71
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=3e-13 Score=140.26 Aligned_cols=183 Identities=19% Similarity=0.279 Sum_probs=125.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-----
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l----- 349 (678)
++||+.+++.|...+... ...++||+||+|||||++|+.+++.+
T Consensus 23 ~~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~ 71 (323)
T 1sxj_B 23 IVGNKETIDRLQQIAKDG-------------------------------NMPHMIISGMPGIGKTTSVHCLAHELLGRSY 71 (323)
T ss_dssp CCSCTHHHHHHHHHHHSC-------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGH
T ss_pred HHCCHHHHHHHHHHHHcC-------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcc
Confidence 799999999887776410 12459999999999999999999986
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHHhhc---hhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHH
Q 005762 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAE---FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (678)
Q Consensus 350 ~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~---~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~ 426 (678)
..+++.+++.+.. + ...+...+.... ..+....+.||||||+|.+... .++.|++
T Consensus 72 ~~~~~~~~~~~~~-----~---~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~ 129 (323)
T 1sxj_B 72 ADGVLELNASDDR-----G---IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQALRR 129 (323)
T ss_dssp HHHEEEECTTSCC-----S---HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHHTTHH
T ss_pred cCCEEEecCcccc-----C---hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHHHHHH
Confidence 3467888877532 1 122333332211 1111224679999999999776 7889999
Q ss_pred HHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhh
Q 005762 427 MLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLES 506 (678)
Q Consensus 427 ~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~ 506 (678)
.++.. ..++.||++++..
T Consensus 130 ~le~~---------------------~~~~~~il~~~~~----------------------------------------- 147 (323)
T 1sxj_B 130 TMELY---------------------SNSTRFAFACNQS----------------------------------------- 147 (323)
T ss_dssp HHHHT---------------------TTTEEEEEEESCG-----------------------------------------
T ss_pred HHhcc---------------------CCCceEEEEeCCh-----------------------------------------
Confidence 99831 1233455544311
Q ss_pred cchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCH
Q 005762 507 VESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGA 586 (678)
Q Consensus 507 v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GA 586 (678)
..+.+.+.+|+. ++.|.+++.+++.+++... .+ ..+ +.+++++++.|++.+ +.+.
T Consensus 148 --------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~----~~-------~~~--~~~~~~~~~~l~~~~---~G~~ 202 (323)
T 1sxj_B 148 --------NKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQI----IK-------LED--VKYTNDGLEAIIFTA---EGDM 202 (323)
T ss_dssp --------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHH----HH-------HHT--CCBCHHHHHHHHHHH---TTCH
T ss_pred --------hhchhHHHhhce-EEeecCCCHHHHHHHHHHH----HH-------HcC--CCCCHHHHHHHHHHc---CCCH
Confidence 014556677775 7899999999999988742 11 113 348999999999986 6678
Q ss_pred HHHHHHHHHHH
Q 005762 587 RGLRAILESIL 597 (678)
Q Consensus 587 R~Lr~iIE~il 597 (678)
|.+.++++...
T Consensus 203 r~a~~~l~~~~ 213 (323)
T 1sxj_B 203 RQAINNLQSTV 213 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888765
No 72
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.43 E-value=4.8e-12 Score=134.40 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=132.1
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.|++ ++||+.+++.|..++.....+ . ....+++|+|||||||||||++||+.+
T Consensus 23 ~l~~-~~g~~~~~~~l~~~i~~~~~~----~----------------------~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 23 SLDE-FIGQENVKKKLSLALEAAKMR----G----------------------EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHHHHHH----T----------------------CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred cHHH-ccCcHHHHHHHHHHHHHHHhc----C----------------------CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3444 689999999888777522110 0 013689999999999999999999999
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 350 ~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
+.++...++..+.. ...+...+... ....|+||||++.+.+. +++.|+..|+
T Consensus 76 ~~~~~~~sg~~~~~--------~~~l~~~~~~~------~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~ 127 (334)
T 1in4_A 76 QTNIHVTSGPVLVK--------QGDMAAILTSL------ERGDVLFIDEIHRLNKA--------------VEELLYSAIE 127 (334)
T ss_dssp TCCEEEEETTTCCS--------HHHHHHHHHHC------CTTCEEEEETGGGCCHH--------------HHHHHHHHHH
T ss_pred CCCEEEEechHhcC--------HHHHHHHHHHc------cCCCEEEEcchhhcCHH--------------HHHHHHHHHH
Confidence 99887766554321 12233333221 24579999999998764 7888888887
Q ss_pred cceeecC-CCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcc
Q 005762 430 GTIVNVP-EKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (678)
Q Consensus 430 g~~v~v~-~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~ 508 (678)
.....+- ..+ .....+......+.+|.+.+.
T Consensus 128 ~~~~~i~~~~~----~~~~~i~~~l~~~~li~at~~-------------------------------------------- 159 (334)
T 1in4_A 128 DFQIDIMIGKG----PSAKSIRIDIQPFTLVGATTR-------------------------------------------- 159 (334)
T ss_dssp TSCCCC-------------------CCCEEEEEESC--------------------------------------------
T ss_pred hcccceeeccC----cccccccccCCCeEEEEecCC--------------------------------------------
Confidence 3211100 000 000111111222333321110
Q ss_pred hhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHH
Q 005762 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARG 588 (678)
Q Consensus 509 ~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~ 588 (678)
...+.+.+.+||...+.|++++.+++.+|+... .+ ..+ +.++++++.+|++.+ ...+|.
T Consensus 160 -----~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~----~~-------~~~--~~~~~~~~~~ia~~~---~G~~R~ 218 (334)
T 1in4_A 160 -----SGLLSSPLRSRFGIILELDFYTVKELKEIIKRA----AS-------LMD--VEIEDAAAEMIAKRS---RGTPRI 218 (334)
T ss_dssp -----GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHH----HH-------HTT--CCBCHHHHHHHHHTS---TTCHHH
T ss_pred -----cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHH----HH-------HcC--CCcCHHHHHHHHHhc---CCChHH
Confidence 012667788999888999999999999998752 11 113 458999999999975 566898
Q ss_pred HHHHHHHHHHHHHh
Q 005762 589 LRAILESILTEAMY 602 (678)
Q Consensus 589 Lr~iIE~il~~a~~ 602 (678)
+.++++.+...+..
T Consensus 219 a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 219 AIRLTKRVRDMLTV 232 (334)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887665543
No 73
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.43 E-value=7.7e-14 Score=155.22 Aligned_cols=194 Identities=21% Similarity=0.292 Sum_probs=118.7
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l- 349 (678)
|+. |||++..++.|...+.+ ..+.|+||+||||||||++|++||+.+
T Consensus 179 ld~-iiGr~~~i~~l~~~l~r-------------------------------~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 179 LDP-VIGRSKEIQRVIEVLSR-------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCC-CCCCHHHHHHHHHHHHC-------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCC-ccCcHHHHHHHHHHHhc-------------------------------cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 444 89999999988777641 124789999999999999999999997
Q ss_pred ---------CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHH
Q 005762 350 ---------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (678)
Q Consensus 350 ---------~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~v 420 (678)
+.+|+.+|++ ..|.|.. +..+..++.... ...++||||| ... ++
T Consensus 227 ~~~~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~----~~~~~iLfiD----~~~--------------~a 279 (468)
T 3pxg_A 227 NNEVPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI--------------DA 279 (468)
T ss_dssp SSCSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C------------------
T ss_pred hCCCChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHH----hcCCeEEEEe----Cch--------------hH
Confidence 7789999987 3355554 445556665443 2367899999 111 27
Q ss_pred HHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhH
Q 005762 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (678)
Q Consensus 421 q~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~ 500 (678)
++.|+++|+. .++.+|++++..+..+.+
T Consensus 280 ~~~L~~~L~~-----------------------g~v~vI~at~~~e~~~~~----------------------------- 307 (468)
T 3pxg_A 280 SNILKPSLAR-----------------------GELQCIGATTLDEYRKYI----------------------------- 307 (468)
T ss_dssp ----CCCTTS-----------------------SSCEEEEECCTTTTHHHH-----------------------------
T ss_pred HHHHHHhhcC-----------------------CCEEEEecCCHHHHHHHh-----------------------------
Confidence 7888888762 134566666644322111
Q ss_pred HHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhc
Q 005762 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (678)
Q Consensus 501 ~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~ 580 (678)
.+.|.|.+||.. |.|.+++.+++.+|+... ..+|.. ...+.++++++..++.++.
T Consensus 308 ---------------~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~----~~~~~~-----~~~~~i~~~al~~l~~~s~ 362 (468)
T 3pxg_A 308 ---------------EKDAALERRFQP-IQVDQPSVDESIQILQGL----RDRYEA-----HHRVSITDDAIEAAVKLSD 362 (468)
T ss_dssp ---------------TTCSHHHHSEEE-EECCCCCHHHHHHHHHHT----TTTSGG-----GSSCSCCHHHHHHHHHHHH
T ss_pred ---------------hcCHHHHHhCcc-ceeCCCCHHHHHHHHHHH----HHHHHH-----hcCCCCCHHHHHHHHHHHH
Confidence 156788899975 899999999999998742 222211 2345689999998887642
Q ss_pred ---CCCCCHHHHHHHHHHHHHHH
Q 005762 581 ---AKNTGARGLRAILESILTEA 600 (678)
Q Consensus 581 ---~~~~GAR~Lr~iIE~il~~a 600 (678)
....-.+....++......+
T Consensus 363 ~~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 363 RYISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp HSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HHhccCcCCcHHHHHHHHHHHHH
Confidence 11122334445555544433
No 74
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=1.4e-12 Score=154.29 Aligned_cols=176 Identities=25% Similarity=0.376 Sum_probs=124.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
|+|++.+++.|.+.+...++ +......++ ..++.++||+||||||||+||++||+.++.+|+
T Consensus 206 i~G~~~~~~~l~e~i~~~l~---~~~~~~~l~---------------i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i 267 (806)
T 1ypw_A 206 VGGCRKQLAQIKEMVELPLR---HPALFKAIG---------------VKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp CCSCSGGGGHHHHHHHHHHH---CGGGGTSSC---------------CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEE
T ss_pred hCChHHHHHHHHHHHHHHhh---CHHHHHhcC---------------CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEE
Confidence 89999999999998863322 221111111 123578999999999999999999999999999
Q ss_pred EEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceee
Q 005762 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (678)
Q Consensus 355 ~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~ 434 (678)
.+++.++.. .|.|+. +..+..+|+.+.. ..++||||||||.+...+.. ........+++.|+.+|++...
T Consensus 268 ~v~~~~l~~-~~~g~~-~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~~- 337 (806)
T 1ypw_A 268 LINGPEIMS-KLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQ- 337 (806)
T ss_dssp EEEHHHHSS-SSTTHH-HHHHHHHHHHHHH----HCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSCT-
T ss_pred EEEchHhhh-hhhhhH-HHHHHHHHHHHHh----cCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhcc-
Confidence 999998874 466665 6677777776543 36789999999999876432 1122234588899999986321
Q ss_pred cCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhh
Q 005762 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (678)
Q Consensus 435 v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~ 514 (678)
..++++|++++..+
T Consensus 338 ------------------~~~v~vI~atn~~~------------------------------------------------ 351 (806)
T 1ypw_A 338 ------------------RAHVIVMAATNRPN------------------------------------------------ 351 (806)
T ss_dssp ------------------TSCCEEEEECSCTT------------------------------------------------
T ss_pred ------------------cccEEEecccCCch------------------------------------------------
Confidence 13456666555321
Q ss_pred hcCCcccc--cccceEEecCCcCHHHHHHHHhc
Q 005762 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 515 ~g~~Pefl--~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
.+.|.+. +||+..+.+..++.++..+|+..
T Consensus 352 -~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~ 383 (806)
T 1ypw_A 352 -SIDPALRRFGRFDREVDIGIPDATGRLEILQI 383 (806)
T ss_dssp -TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHH
T ss_pred -hcCHHHhcccccccccccCCCCHHHHHHHHHH
Confidence 1334444 48999999999999999998874
No 75
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.40 E-value=1.7e-12 Score=128.30 Aligned_cols=170 Identities=19% Similarity=0.271 Sum_probs=113.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 401 (678)
..+++|+||||||||++|+++++.+. .+++.+++.++... + ... +. ....+.+|||||+|.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-----~~~----~~------~~~~~~vliiDe~~~ 115 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S-----TAL----LE------GLEQFDLICIDDVDA 115 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C-----GGG----GT------TGGGSSEEEEETGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H-----HHH----HH------hccCCCEEEEecccc
Confidence 37899999999999999999998884 78888998876532 1 110 10 013568999999999
Q ss_pred hhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCC
Q 005762 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (678)
Q Consensus 402 l~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ig 481 (678)
+.... ..++.|+.+++.... ...+.+|++++...
T Consensus 116 ~~~~~------------~~~~~l~~~l~~~~~-------------------~~~~~ii~~~~~~~--------------- 149 (242)
T 3bos_A 116 VAGHP------------LWEEAIFDLYNRVAE-------------------QKRGSLIVSASASP--------------- 149 (242)
T ss_dssp GTTCH------------HHHHHHHHHHHHHHH-------------------HCSCEEEEEESSCT---------------
T ss_pred ccCCH------------HHHHHHHHHHHHHHH-------------------cCCCeEEEEcCCCH---------------
Confidence 86541 137778887762110 11111333333210
Q ss_pred cCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHHHHHHh
Q 005762 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFS 559 (678)
Q Consensus 482 F~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~ 559 (678)
.+ -..+.+.+.+|+. .++.|.+++.+++.+++... .+
T Consensus 150 ----------------------------~~--~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~----~~------- 188 (242)
T 3bos_A 150 ----------------------------ME--AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRR----AA------- 188 (242)
T ss_dssp ----------------------------TT--TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHH----HH-------
T ss_pred ----------------------------HH--HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHH----HH-------
Confidence 00 0012355667775 68999999999999988742 11
Q ss_pred cCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHh
Q 005762 560 MNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (678)
Q Consensus 560 ~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~ 602 (678)
..+ +.++++++++|++.+ ..+.|.|.++++.++..+..
T Consensus 189 ~~~--~~~~~~~~~~l~~~~---~g~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 189 MRG--LQLPEDVGRFLLNRM---ARDLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp HTT--CCCCHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHH
T ss_pred HcC--CCCCHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHH
Confidence 123 458999999999974 56799999999998877754
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=1.5e-12 Score=138.00 Aligned_cols=184 Identities=21% Similarity=0.318 Sum_probs=120.5
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
|++ ++||+.+++.|...+... ...|++|+||||||||++|+++|+.+.
T Consensus 24 ~~~-~~g~~~~~~~L~~~i~~g-------------------------------~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 24 LDE-VYGQNEVITTVRKFVDEG-------------------------------KLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp GGG-CCSCHHHHHHHHHHHHTT-------------------------------CCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHH-hcCcHHHHHHHHHHHhcC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 444 789999999887777410 014699999999999999999999873
Q ss_pred C-----CEEEEeccccccccccccchHHHHHHHHHhhc--hhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHH
Q 005762 351 V-----PFVIADATTLTQAGYVGEDVESILYKLLAQAE--FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (678)
Q Consensus 351 ~-----~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~--~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~ 423 (678)
. .++.+++++.. | ...+++.+.... ...-.....|++|||+|.+... .+++
T Consensus 72 ~~~~~~~~~~~~~~~~~-----~---~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~ 129 (340)
T 1sxj_C 72 GKNYSNMVLELNASDDR-----G---IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA--------------AQNA 129 (340)
T ss_dssp TTSHHHHEEEECTTSCC-----S---HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH--------------HHHH
T ss_pred CCCccceEEEEcCcccc-----c---HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH--------------HHHH
Confidence 3 46677776532 1 112222222111 0001123579999999999775 8999
Q ss_pred HHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHH
Q 005762 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSL 503 (678)
Q Consensus 424 LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~l 503 (678)
|++.||.. ..+..||++++..
T Consensus 130 L~~~le~~---------------------~~~~~~il~~n~~-------------------------------------- 150 (340)
T 1sxj_C 130 LRRVIERY---------------------TKNTRFCVLANYA-------------------------------------- 150 (340)
T ss_dssp HHHHHHHT---------------------TTTEEEEEEESCG--------------------------------------
T ss_pred HHHHHhcC---------------------CCCeEEEEEecCc--------------------------------------
Confidence 99999831 1122344444321
Q ss_pred HhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCC
Q 005762 504 LESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKN 583 (678)
Q Consensus 504 l~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~ 583 (678)
..+.|.+.+|+. ++.|.+++.+++.+++... +...+ +.+++++++.|++.+ +
T Consensus 151 -----------~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~-----------~~~~~--~~i~~~~~~~i~~~s---~ 202 (340)
T 1sxj_C 151 -----------HKLTPALLSQCT-RFRFQPLPQEAIERRIANV-----------LVHEK--LKLSPNAEKALIELS---N 202 (340)
T ss_dssp -----------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHH-----------HHTTT--CCBCHHHHHHHHHHH---T
T ss_pred -----------cccchhHHhhce-eEeccCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---C
Confidence 125667788876 6799999999998877641 11223 458999999999986 5
Q ss_pred CCHHHHHHHHHH
Q 005762 584 TGARGLRAILES 595 (678)
Q Consensus 584 ~GAR~Lr~iIE~ 595 (678)
...|.+.++++.
T Consensus 203 G~~r~~~~~l~~ 214 (340)
T 1sxj_C 203 GDMRRVLNVLQS 214 (340)
T ss_dssp TCHHHHHHHTTT
T ss_pred CCHHHHHHHHHH
Confidence 556666555554
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.40 E-value=9.2e-13 Score=154.29 Aligned_cols=211 Identities=21% Similarity=0.317 Sum_probs=135.2
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 270 ~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.++. |+|++..++.+...+.. ..+.++||+||||||||++|+++|+.+
T Consensus 184 ~~d~-~iGr~~~i~~l~~~l~~-------------------------------~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 184 GIDP-LIGREKELERAIQVLCR-------------------------------RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CSCC-CCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCC-ccCCHHHHHHHHHHHhc-------------------------------cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4554 89999999988776631 124789999999999999999999887
Q ss_pred ----------CCCEEEEecccccc-ccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchh
Q 005762 350 ----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (678)
Q Consensus 350 ----------~~~fv~id~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~ 418 (678)
+..++.+++..+.. ..|.|.. +..+..++..... ..++||||||+|.+...... .....
T Consensus 232 ~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~-----~~~~~ 301 (758)
T 1r6b_X 232 VQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAA-----SGGQV 301 (758)
T ss_dssp HHTCSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHHSS----SSCEEEEETTTTTTTTSCCS-----SSCHH
T ss_pred HhCCCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHHHh----cCCeEEEEechHHHhhcCCC-----CcchH
Confidence 56788888887763 3466654 6667777765432 35689999999998764211 11123
Q ss_pred HHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchH
Q 005762 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (678)
Q Consensus 419 ~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~ 498 (678)
++++.|..+++. .++.+|++++..+
T Consensus 302 ~~~~~L~~~l~~-----------------------~~~~~I~at~~~~-------------------------------- 326 (758)
T 1r6b_X 302 DAANLIKPLLSS-----------------------GKIRVIGSTTYQE-------------------------------- 326 (758)
T ss_dssp HHHHHHSSCSSS-----------------------CCCEEEEEECHHH--------------------------------
T ss_pred HHHHHHHHHHhC-----------------------CCeEEEEEeCchH--------------------------------
Confidence 456666655541 2345555554211
Q ss_pred hHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 499 ~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
+...+ ...|.|.+||+ .+.|..++.+++.+|+.. +...|.. ...+.+++++++.++..
T Consensus 327 ----~~~~~--------~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~----l~~~~~~-----~~~v~~~~~al~~~~~~ 384 (758)
T 1r6b_X 327 ----FSNIF--------EKDRALARRFQ-KIDITEPSIEETVQIING----LKPKYEA-----HHDVRYTAKAVRAAVEL 384 (758)
T ss_dssp ----HHCCC--------CCTTSSGGGEE-EEECCCCCHHHHHHHHHH----HHHHHHH-----HHTCCCCHHHHHHHHHH
T ss_pred ----Hhhhh--------hcCHHHHhCce-EEEcCCCCHHHHHHHHHH----HHHHHHH-----hcCCCCCHHHHHHHHHH
Confidence 11111 14578899998 589999999999999985 4444433 12355889999988876
Q ss_pred hc---CCCCCHHHHHHHHHHHHHH
Q 005762 579 AT---AKNTGARGLRAILESILTE 599 (678)
Q Consensus 579 a~---~~~~GAR~Lr~iIE~il~~ 599 (678)
+. ....-...+..++......
T Consensus 385 s~~~i~~~~lp~~~i~lld~a~~~ 408 (758)
T 1r6b_X 385 AVKYINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_dssp HHHHCTTSCTTHHHHHHHHHHHHH
T ss_pred hhhhcccccCchHHHHHHHHHHHH
Confidence 52 1222223445555554443
No 78
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.40 E-value=1.5e-12 Score=143.92 Aligned_cols=174 Identities=16% Similarity=0.256 Sum_probs=113.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHHhhc-hhHh--hh-cCcEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAE-FNVE--AA-QQGMVYI 396 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-----~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~-~~v~--~a-~~gILfI 396 (678)
.+++|+||||||||+||++|++.+ +.+++.+++.++... + + ..+.... ..+. .. .+.||||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~-~--------~-~~~~~~~~~~~~~~~~~~~~vL~I 200 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-L--------V-DSMKEGKLNEFREKYRKKVDILLI 200 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH-H--------H-HHHHTTCHHHHHHHHTTTCSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-H--------H-HHHHcccHHHHHHHhcCCCCEEEE
Confidence 689999999999999999999988 788999998876421 1 1 1111100 0011 11 4679999
Q ss_pred cCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcc
Q 005762 397 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQ 476 (678)
Q Consensus 397 DEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~ 476 (678)
||||.+.... ..|+.|+..|+.... .+..+|++++...
T Consensus 201 DEi~~l~~~~------------~~q~~l~~~l~~l~~--------------------~~~~iIitt~~~~---------- 238 (440)
T 2z4s_A 201 DDVQFLIGKT------------GVQTELFHTFNELHD--------------------SGKQIVICSDREP---------- 238 (440)
T ss_dssp ECGGGGSSCH------------HHHHHHHHHHHHHHT--------------------TTCEEEEEESSCG----------
T ss_pred eCcccccCCh------------HHHHHHHHHHHHHHH--------------------CCCeEEEEECCCH----------
Confidence 9999987531 267778888762100 0112222222100
Q ss_pred cCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccc--eEEecCCcCHHHHHHHHhchHHHHHHHH
Q 005762 477 DSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQY 554 (678)
Q Consensus 477 ~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~--~iv~f~~LseeeL~~Il~~~ln~L~~q~ 554 (678)
.++ ..+.+.|++||. .++.+.+++.+++.+|+.... .
T Consensus 239 ---------------------------------~~l--~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~----~-- 277 (440)
T 2z4s_A 239 ---------------------------------QKL--SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML----E-- 277 (440)
T ss_dssp ---------------------------------GGC--SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHH----H--
T ss_pred ---------------------------------HHH--HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHH----H--
Confidence 000 015566777775 678999999999999987521 1
Q ss_pred HHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHh
Q 005762 555 KRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (678)
Q Consensus 555 ~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~ 602 (678)
..+ +.++++++++|+... ..++|.|.++++.++..+..
T Consensus 278 -----~~~--~~i~~e~l~~la~~~---~gn~R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 278 -----IEH--GELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKET 315 (440)
T ss_dssp -----HHT--CCCCTTHHHHHHHHC---CSCHHHHHHHHHHHHHHHHH
T ss_pred -----HcC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 112 458999999999875 57899999999998876643
No 79
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=2e-12 Score=136.71 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=49.4
Q ss_pred CCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeC-HHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005762 517 LIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFT-EKALRVIAKKATAKNTGARGLRAILES 595 (678)
Q Consensus 517 ~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t-~eal~~La~~a~~~~~GAR~Lr~iIE~ 595 (678)
+.|.+.+|+ ..+.|.+++.+++.+++... .+ ..+ +.++ +++++.|++.+ +.+.|.+.++++.
T Consensus 177 l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~----~~-------~~~--~~~~~~~~l~~i~~~~---~G~~r~a~~~l~~ 239 (354)
T 1sxj_E 177 IIAPIKSQC-LLIRCPAPSDSEISTILSDV----VT-------NER--IQLETKDILKRIAQAS---NGNLRVSLLMLES 239 (354)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHHHHH----HH-------HHT--CEECCSHHHHHHHHHH---TTCHHHHHHHHTH
T ss_pred HHHHHHhhc-eEEecCCcCHHHHHHHHHHH----HH-------HcC--CCCCcHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 455677787 67899999999999988742 11 113 4588 99999999986 6778988888887
Q ss_pred HHH
Q 005762 596 ILT 598 (678)
Q Consensus 596 il~ 598 (678)
+..
T Consensus 240 ~~~ 242 (354)
T 1sxj_E 240 MAL 242 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 80
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.37 E-value=7.8e-13 Score=155.14 Aligned_cols=173 Identities=24% Similarity=0.342 Sum_probs=112.4
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh-
Q 005762 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (678)
Q Consensus 271 Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l- 349 (678)
++. |||++..++.|...+.. ..+.|+||+||||||||++|++||+.+
T Consensus 179 ld~-iiG~~~~i~~l~~~l~~-------------------------------~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 179 LDP-VIGRSKEIQRVIEVLSR-------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCC-CCCCHHHHHHHHHHHHC-------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCC-ccCchHHHHHHHHHHhC-------------------------------CCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 444 89999999999887741 124789999999999999999999997
Q ss_pred ---------CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHH
Q 005762 350 ---------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (678)
Q Consensus 350 ---------~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~v 420 (678)
+.+++.+|+ ...|.|+. +..+..++..+.. ..++||||| ... ++
T Consensus 227 ~~~~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~~----~~~~iLfiD----~~~--------------~~ 279 (758)
T 3pxi_A 227 NNEVPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIRQ----AGNIILFID----AAI--------------DA 279 (758)
T ss_dssp SSCSCTTTSSCCEECC---------------CTTHHHHHHHHHT----CCCCEEEEC----C------------------
T ss_pred cCCCChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHHh----cCCEEEEEc----Cch--------------hH
Confidence 778888888 23466654 5566677765432 467899999 111 27
Q ss_pred HHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhH
Q 005762 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (678)
Q Consensus 421 q~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~ 500 (678)
++.|+++|+. .++.+|++++..+..+.+
T Consensus 280 ~~~L~~~l~~-----------------------~~v~~I~at~~~~~~~~~----------------------------- 307 (758)
T 3pxi_A 280 SNILKPSLAR-----------------------GELQCIGATTLDEYRKYI----------------------------- 307 (758)
T ss_dssp ----CCCTTS-----------------------SSCEEEEECCTTTTHHHH-----------------------------
T ss_pred HHHHHHHHhc-----------------------CCEEEEeCCChHHHHHHh-----------------------------
Confidence 7888888772 134566666644322221
Q ss_pred HHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 005762 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (678)
Q Consensus 501 ~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a 579 (678)
.+.|.|.+||. .|.|.+++.+++.+|+.. +...|.. ...+.++++++..+++.+
T Consensus 308 ---------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~----~~~~~~~-----~~~~~i~~~al~~~~~~s 361 (758)
T 3pxi_A 308 ---------------EKDAALERRFQ-PIQVDQPSVDESIQILQG----LRDRYEA-----HHRVSITDDAIEAAVKLS 361 (758)
T ss_dssp ---------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHH----TTTTSGG-----GSSCSCCHHHHHHHHHHH
T ss_pred ---------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHH----HHHHHHH-----hcCCCCCHHHHHHHHHHh
Confidence 16788889994 589999999999999874 2222211 234568999999888764
No 81
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.35 E-value=9.9e-13 Score=124.59 Aligned_cols=116 Identities=25% Similarity=0.321 Sum_probs=76.1
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh----
Q 005762 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (678)
Q Consensus 274 ~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l---- 349 (678)
.++|++.+++.+...+.. ....++||+||||||||++|+.+++.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~-------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~ 71 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSR-------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGD 71 (187)
T ss_dssp CCCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTC
T ss_pred hhhcchHHHHHHHHHHhC-------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 479999988887666530 013689999999999999999999987
Q ss_pred ------CCCEEEEeccccccc-cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHH
Q 005762 350 ------NVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (678)
Q Consensus 350 ------~~~fv~id~s~l~~s-gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~ 422 (678)
+.+++.+++..+... .+.+.. ...+..++..... ...+.||||||+|.+...+..... ...+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~-----~~~~~~ 142 (187)
T 2p65_A 72 VPDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEVQD---AEGQVVMFIDEIHTVVGAGAVAEG-----ALDAGN 142 (187)
T ss_dssp SCTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHHHH---TTTSEEEEETTGGGGSSSSSSCTT-----SCCTHH
T ss_pred CcchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHHHh---cCCceEEEEeCHHHhccccccccc-----chHHHH
Confidence 678888888766421 122222 3334444433211 124569999999999754221111 123778
Q ss_pred HHHHHHh
Q 005762 423 ALLKMLE 429 (678)
Q Consensus 423 ~LL~~LE 429 (678)
.|+.+++
T Consensus 143 ~l~~~~~ 149 (187)
T 2p65_A 143 ILKPMLA 149 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888876
No 82
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=8.5e-12 Score=131.85 Aligned_cols=212 Identities=17% Similarity=0.220 Sum_probs=132.7
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHh---
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l--- 349 (678)
+.++|++..++.|...+.... . .....+++|+||+|||||++++.+++.+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~--------~-------------------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY--------R-------------------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG--------G-------------------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--------c-------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 347999999988877663110 0 0124689999999999999999999988
Q ss_pred ---CCCEEEEeccccccc---------------cccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccc
Q 005762 350 ---NVPFVIADATTLTQA---------------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (678)
Q Consensus 350 ---~~~fv~id~s~l~~s---------------gyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~ 411 (678)
+.+++.++|...... ...+......+..++..... ...+.||||||++.+.....
T Consensus 73 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l~~~~~---- 145 (386)
T 2qby_A 73 FLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD---YGSQVVIVLDEIDAFVKKYN---- 145 (386)
T ss_dssp TCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT---CCSCEEEEEETHHHHHHSSC----
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCeEEEEEcChhhhhccCc----
Confidence 888999998643210 01122222222222222110 12367999999999875410
Q ss_pred cCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccc
Q 005762 412 SRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMR 491 (678)
Q Consensus 412 ~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~ 491 (678)
..++..|+..++.. ...++.+|++++..++
T Consensus 146 ------~~~l~~l~~~~~~~--------------------~~~~~~~I~~~~~~~~------------------------ 175 (386)
T 2qby_A 146 ------DDILYKLSRINSEV--------------------NKSKISFIGITNDVKF------------------------ 175 (386)
T ss_dssp ------STHHHHHHHHHHSC--------------------CC--EEEEEEESCGGG------------------------
T ss_pred ------CHHHHHHhhchhhc--------------------CCCeEEEEEEECCCCh------------------------
Confidence 12777888887621 1234566666653210
Q ss_pred cCCCchHhHHHHHhhcchhhhhhhcCCcccccccce-EEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHH
Q 005762 492 AGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (678)
Q Consensus 492 ~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~-iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~e 570 (678)
+ ..+.+.+.+|+.. .+.|++|+.+++.+|+... + ... .....++++
T Consensus 176 ------------~----------~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~---~----~~~----~~~~~~~~~ 222 (386)
T 2qby_A 176 ------------V----------DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKR---A----QMA----FKPGVLPDN 222 (386)
T ss_dssp ------------G----------GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHH---H----HHH----BCSSCSCHH
T ss_pred ------------H----------hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHH---H----Hhh----ccCCCCCHH
Confidence 0 0134455566653 7899999999999998752 1 111 113458999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 005762 571 ALRVIAKKATAKNTGARGLRAILESILTEAM 601 (678)
Q Consensus 571 al~~La~~a~~~~~GAR~Lr~iIE~il~~a~ 601 (678)
++++|++.+.......|.+.++++.++..+.
T Consensus 223 ~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 223 VIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999875444678888888887765544
No 83
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.33 E-value=1.8e-12 Score=143.41 Aligned_cols=240 Identities=13% Similarity=0.123 Sum_probs=141.0
Q ss_pred HHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHH
Q 005762 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (678)
Q Consensus 265 ~el~~~Ld~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAra 344 (678)
..|.+.+.. |+||+.+|+.|..++.. |... .....|+||.|+||| ||++|++
T Consensus 206 ~~l~~sIap-I~G~e~vK~aLll~L~G--------------G~~k------------~rgdihVLL~G~PGt-KS~Lar~ 257 (506)
T 3f8t_A 206 TTFARAIAP-LPGAEEVGKMLALQLFS--------------CVGK------------NSERLHVLLAGYPVV-CSEILHH 257 (506)
T ss_dssp HHHHHHHCC-STTCHHHHHHHHHHHTT--------------CCSS------------GGGCCCEEEESCHHH-HHHHHHH
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHcC--------------Cccc------------cCCceeEEEECCCCh-HHHHHHH
Confidence 457778888 99999999998777631 0000 112459999999999 9999999
Q ss_pred H-HHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHH
Q 005762 345 L-ARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (678)
Q Consensus 345 l-A~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~ 423 (678)
+ ++.+....+..+... ...+..+. .... .. +.-..+.+..++++|+|||||+++.++ .|.+
T Consensus 258 i~~~i~pR~~ft~g~~s-s~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~--------------~qsa 319 (506)
T 3f8t_A 258 VLDHLAPRGVYVDLRRT-ELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEP--------------HRWA 319 (506)
T ss_dssp HHHHTCSSEEEEEGGGC-CHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHH--------------HHHH
T ss_pred HHHHhCCCeEEecCCCC-CccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHH--------------HHHH
Confidence 9 888754332222110 00011111 0000 12 223355667778899999999999887 9999
Q ss_pred HHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHH
Q 005762 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSL 503 (678)
Q Consensus 424 LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~l 503 (678)
|++.||...+++. |. ..+ .++.+|++.|... .|+...
T Consensus 320 LlEaMEe~~VtI~--G~--~lp--------arf~VIAA~NP~~--------------~yd~~~----------------- 356 (506)
T 3f8t_A 320 LMEAMDKGTVTVD--GI--ALN--------ARCAVLAAINPGE--------------QWPSDP----------------- 356 (506)
T ss_dssp HHHHHHHSEEEET--TE--EEE--------CCCEEEEEECCCC----------------CCSC-----------------
T ss_pred HHHHHhCCcEEEC--CE--EcC--------CCeEEEEEeCccc--------------ccCCCC-----------------
Confidence 9999997777774 21 222 3344555555431 010000
Q ss_pred HhhcchhhhhhhcCCcccccccceEEecCCcCHHHH-----HHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHh
Q 005762 504 LESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQL-----VKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (678)
Q Consensus 504 l~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL-----~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~ 578 (678)
.+....+.+.+++|||.++.+.++...+. ..++. ...+++|....+.......+++++.++|.++
T Consensus 357 -------s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls---~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 357 -------PIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPS---YTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp -------GGGGCCSCHHHHTTCSEEEETTC--------------CC---HHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred -------CccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCC---HHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 00123488899999999776655543222 11222 1345555554432355778999999888764
Q ss_pred hc---------------CCCCCHHHHHHHHHHHHHHHHhc
Q 005762 579 AT---------------AKNTGARGLRAILESILTEAMYE 603 (678)
Q Consensus 579 a~---------------~~~~GAR~Lr~iIE~il~~a~~~ 603 (678)
.. .-....|.+..++.-.-..|..+
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~ 466 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMR 466 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHc
Confidence 21 22455799999886544444433
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.29 E-value=3.2e-11 Score=128.02 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=100.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC------------------------EEEEeccccccccccccchHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQ 381 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~------------------------fv~id~s~l~~sgyvG~~~~~~l~~l~~~ 381 (678)
..+||+||+|||||++|+++|+.+... ++.++..+- ....+ ...++.++..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~---i~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLG---VDAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBC---HHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCC---HHHHHHHHHH
Confidence 459999999999999999999988542 333333210 00111 2345555554
Q ss_pred hchhHhhhcCcEEEEcCccchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEec
Q 005762 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICG 461 (678)
Q Consensus 382 a~~~v~~a~~gILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~t 461 (678)
....-..+...||+|||+|++... .+++||+.||.- ..+++||++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEep---------------------~~~~~~Il~ 144 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLEEP---------------------PAETWFFLA 144 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTSC---------------------CTTEEEEEE
T ss_pred HhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcCC---------------------CCCeEEEEE
Confidence 332212235679999999999876 899999999831 123455554
Q ss_pred CCCcCHHHHHHhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHH
Q 005762 462 GAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVK 541 (678)
Q Consensus 462 Gaf~~Le~~i~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~ 541 (678)
++.. ..+.|.+.+|+. ++.|.+++++++.+
T Consensus 145 t~~~-------------------------------------------------~~l~~ti~SRc~-~~~~~~~~~~~~~~ 174 (334)
T 1a5t_A 145 TREP-------------------------------------------------ERLLATLRSRCR-LHYLAPPPEQYAVT 174 (334)
T ss_dssp ESCG-------------------------------------------------GGSCHHHHTTSE-EEECCCCCHHHHHH
T ss_pred eCCh-------------------------------------------------HhCcHHHhhcce-eeeCCCCCHHHHHH
Confidence 4311 015667777874 58999999999998
Q ss_pred HHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHH
Q 005762 542 VLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (678)
Q Consensus 542 Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~ 591 (678)
++... . .+++++++.|++.+ +...|.+.+
T Consensus 175 ~L~~~---------------~---~~~~~~~~~l~~~s---~G~~r~a~~ 203 (334)
T 1a5t_A 175 WLSRE---------------V---TMSQDALLAALRLS---AGSPGAALA 203 (334)
T ss_dssp HHHHH---------------C---CCCHHHHHHHHHHT---TTCHHHHHH
T ss_pred HHHHh---------------c---CCCHHHHHHHHHHc---CCCHHHHHH
Confidence 87641 0 47888888888775 344444433
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=1.8e-11 Score=129.16 Aligned_cols=126 Identities=15% Similarity=0.187 Sum_probs=88.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l------~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 399 (678)
.++||+||||+|||++|+++|+.+ ...|+.+++.+- ..+ -..+++++..+...-......||||||+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~----~~~---id~ir~li~~~~~~p~~~~~kvviIdea 91 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE----NIG---IDDIRTIKDFLNYSPELYTRKYVIVHDC 91 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----CBC---HHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC----CCC---HHHHHHHHHHHhhccccCCceEEEeccH
Confidence 579999999999999999999864 346777776531 112 2234555544432211234579999999
Q ss_pred cchhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHHhhcccCC
Q 005762 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSS 479 (678)
Q Consensus 400 Dkl~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~~r~~~~~ 479 (678)
|.+... .+++||+.||. ...+.+||++++..
T Consensus 92 d~lt~~--------------a~naLLk~LEe---------------------p~~~t~fIl~t~~~-------------- 122 (305)
T 2gno_A 92 ERMTQQ--------------AANAFLKALEE---------------------PPEYAVIVLNTRRW-------------- 122 (305)
T ss_dssp GGBCHH--------------HHHHTHHHHHS---------------------CCTTEEEEEEESCG--------------
T ss_pred HHhCHH--------------HHHHHHHHHhC---------------------CCCCeEEEEEECCh--------------
Confidence 999876 89999999993 11234555544311
Q ss_pred CCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhc
Q 005762 480 IGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (678)
Q Consensus 480 igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~ 545 (678)
..+.|.+.+| ++.|.+++++++.+++..
T Consensus 123 -----------------------------------~kl~~tI~SR---~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 123 -----------------------------------HYLLPTIKSR---VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp -----------------------------------GGSCHHHHTT---SEEEECCCCHHHHHHHHH
T ss_pred -----------------------------------HhChHHHHce---eEeCCCCCHHHHHHHHHH
Confidence 1267788889 789999999999998875
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.97 E-value=1.7e-09 Score=115.92 Aligned_cols=220 Identities=20% Similarity=0.191 Sum_probs=124.4
Q ss_pred hcccCHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEE--EcCCCcHHHHHHHHHHHHh
Q 005762 273 KFVIGQEKAKKVLSVAV-YNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLL--MGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av-~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL--~GPpGtGKT~LAralA~~l 349 (678)
..++|++..++.|...+ .... .. ......+++| +||+|||||+|++.+++.+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~----~~---------------------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLL----SG---------------------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHH----TS---------------------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHh----cC---------------------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 44799999999887776 4210 00 0001357889 9999999999999999876
Q ss_pred ---------CCCEEEEeccccccc-----------cc----cccchHHHHHHHHHhhchhHh-hhcCcEEEEcCccchhh
Q 005762 350 ---------NVPFVIADATTLTQA-----------GY----VGEDVESILYKLLAQAEFNVE-AAQQGMVYIDEVDKITK 404 (678)
Q Consensus 350 ---------~~~fv~id~s~l~~s-----------gy----vG~~~~~~l~~l~~~a~~~v~-~a~~gILfIDEIDkl~~ 404 (678)
+.+++.++|...... +. .+......+..+.. .+. ...+.||||||+|.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 77 SEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVD----NLYVENHYLLVILDEFQSMLS 152 (412)
T ss_dssp HHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHH----HHHHHTCEEEEEEESTHHHHS
T ss_pred HHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH----HHHhcCCeEEEEEeCHHHHhh
Confidence 456788887532110 00 01111111111111 111 12456999999999864
Q ss_pred hhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEec--CcceEEecCCCcCHHHHHHhhcccCCCCc
Q 005762 405 KAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDT--KDILFICGGAFVDLEKTISERRQDSSIGF 482 (678)
Q Consensus 405 ~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idt--sNilfI~tGaf~~Le~~i~~r~~~~~igF 482 (678)
... ....++..|++.++... .+. .++.+|++++..++.+.+..
T Consensus 153 ~~~--------~~~~~l~~l~~~~~~~~------------------~~~~~~~v~lI~~~~~~~~~~~l~~--------- 197 (412)
T 1w5s_A 153 SPR--------IAAEDLYTLLRVHEEIP------------------SRDGVNRIGFLLVASDVRALSYMRE--------- 197 (412)
T ss_dssp CTT--------SCHHHHHHHHTHHHHSC------------------CTTSCCBEEEEEEEEETHHHHHHHH---------
T ss_pred ccC--------cchHHHHHHHHHHHhcc------------------cCCCCceEEEEEEeccccHHHHHhh---------
Confidence 200 01136666777765210 011 34566666543222111100
Q ss_pred CcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHHhcCC
Q 005762 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNN 562 (678)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~~~~g 562 (678)
..+.+.+++...+.|.+|+.+++.+++... +. ..+
T Consensus 198 ----------------------------------~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~---~~----~~~---- 232 (412)
T 1w5s_A 198 ----------------------------------KIPQVESQIGFKLHLPAYKSRELYTILEQR---AE----LGL---- 232 (412)
T ss_dssp ----------------------------------HCHHHHTTCSEEEECCCCCHHHHHHHHHHH---HH----HHB----
T ss_pred ----------------------------------hcchhhhhcCCeeeeCCCCHHHHHHHHHHH---HH----hcC----
Confidence 002233344444899999999999998742 11 111
Q ss_pred ceeeeCHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHHHH
Q 005762 563 VKLHFTEKALRVIAKKATAKN---TGARGLRAILESILTEAM 601 (678)
Q Consensus 563 v~l~~t~eal~~La~~a~~~~---~GAR~Lr~iIE~il~~a~ 601 (678)
....+++++++.|++.+.... ...|.+..++...+..+.
T Consensus 233 ~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~ 274 (412)
T 1w5s_A 233 RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAE 274 (412)
T ss_dssp CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 123488999999999874222 668888888777655443
No 87
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.75 E-value=2.6e-07 Score=96.22 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=41.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
++|.+...+.|..++.. ...++|+||+|+|||+|++.+++.++ ++
T Consensus 14 ~~gR~~el~~L~~~l~~---------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~ 58 (350)
T 2qen_A 14 IFDREEESRKLEESLEN---------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP--GI 58 (350)
T ss_dssp SCSCHHHHHHHHHHHHH---------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--EE
T ss_pred cCChHHHHHHHHHHHhc---------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--cE
Confidence 68999999888776631 14799999999999999999999875 66
Q ss_pred EEeccc
Q 005762 355 IADATT 360 (678)
Q Consensus 355 ~id~s~ 360 (678)
.+++..
T Consensus 59 ~~~~~~ 64 (350)
T 2qen_A 59 LIDCRE 64 (350)
T ss_dssp EEEHHH
T ss_pred EEEeec
Confidence 777654
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.70 E-value=2.4e-08 Score=129.92 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=96.1
Q ss_pred CcEEEEcCCCcHHHHHH-HHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhch-------hH----hhhcCcE
Q 005762 326 SNVLLMGPTGSGKTLLA-KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF-------NV----EAAQQGM 393 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LA-ralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~-------~v----~~a~~gI 393 (678)
.++||+||||||||++| +++++..+.+++.++++..+.+ ..+...+..... .+ ......|
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 68999999999999999 5555555778888998876632 233333332210 00 0123469
Q ss_pred EEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHHH
Q 005762 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTIS 472 (678)
Q Consensus 394 LfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i~ 472 (678)
||||||+....++. ..+.+++.|.++|| |..... .. .. .+...++.||++.|..+
T Consensus 1340 lFiDEinmp~~d~y--------g~q~~lelLRq~le~gg~yd~-~~-------~~--~~~~~~i~lIaA~Npp~------ 1395 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY--------GSQNVVLFLRQLMEKQGFWKT-PE-------NK--WVTIERIHIVGACNPPT------ 1395 (2695)
T ss_dssp EEEETTTCSCCCSS--------SCCHHHHHHHHHHHTSSEECT-TT-------CC--EEEEESEEEEEEECCTT------
T ss_pred EEeccccccccccc--------CchhHHHHHHHHHhcCCEEEc-CC-------Cc--EEEecCEEEEEecCCCc------
Confidence 99999996433211 11248888999998 444321 11 11 22337888888777531
Q ss_pred hhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhch
Q 005762 473 ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (678)
Q Consensus 473 ~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ 546 (678)
. .+ ...+.|.|++|| .++.++.++++++.+|+...
T Consensus 1396 ------~--gG------------------------------R~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~i 1430 (2695)
T 4akg_A 1396 ------D--PG------------------------------RIPMSERFTRHA-AILYLGYPSGKSLSQIYEIY 1430 (2695)
T ss_dssp ------S--TT------------------------------CCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHH
T ss_pred ------c--CC------------------------------CccCChhhhhee-eEEEeCCCCHHHHHHHHHHH
Confidence 0 00 112677888899 66899999999999998864
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.55 E-value=6.6e-08 Score=92.61 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=43.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEeccccccccccccchHHHHHHHHHhhch--h-HhhhcCcEEEEc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF--N-VEAAQQGMVYID 397 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~--~-v~~a~~gILfID 397 (678)
..+++|+||||||||+|++++++.+ +..++.+++.++... +...+..... . -....+.+|+||
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~llilD 107 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR----------LKHLMDEGKDTKFLKTVLNSPVLVLD 107 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH----------HHHHHHHTCCSHHHHHHHTCSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH----------HHHHhcCchHHHHHHHhcCCCEEEEe
Confidence 3689999999999999999999887 455666666554321 1111111100 0 011256799999
Q ss_pred Cccch
Q 005762 398 EVDKI 402 (678)
Q Consensus 398 EIDkl 402 (678)
|++..
T Consensus 108 E~~~~ 112 (180)
T 3ec2_A 108 DLGSE 112 (180)
T ss_dssp TCSSS
T ss_pred CCCCC
Confidence 99853
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.42 E-value=2.4e-06 Score=111.38 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=53.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
.+.++.||+|||||++++.+|+.++.+++.++|++-.. ...+...|..+.. .+++++||||+++.++
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld--------~~~lg~~~~g~~~-----~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD--------YQVLSRLLVGITQ-----IGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC--------HHHHHHHHHHHHH-----HTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC--------hhHhhHHHHHHHh-----cCCEeeehhhhhcChH
Confidence 57899999999999999999999999999999997553 2334444433221 3579999999998876
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.42 E-value=9.7e-07 Score=91.91 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=31.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
..++++||+|+|||+|++.+++.+...++.+++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 479999999999999999999998777888887653
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.29 E-value=4e-07 Score=88.48 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=32.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~ 362 (678)
.+++|+||||||||+||+++++.+ +.+++.+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 689999999999999999999988 5688888887654
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.28 E-value=3.2e-06 Score=89.32 Aligned_cols=167 Identities=15% Similarity=0.162 Sum_probs=101.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC---C-CEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCcc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN---V-PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~---~-~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 400 (678)
...+||+||.|+||++.++.|++.+. . ++..+. +. + ..++.. +.......+ -.+..-||+|||+|
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~--~--~~~~~~-l~~~~~~~p---lf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---ID--P--NTDWNA-IFSLCQAMS---LFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---CC--T--TCCHHH-HHHHHHHHH---HCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---ec--C--CCCHHH-HHHHhcCcC---CccCCeEEEEECCC
Confidence 36799999999999999999998762 1 222121 11 0 122222 222222211 12345799999999
Q ss_pred c-hhhhhccccccCCCchhHHHHHHHHHHhcceeecCCCCcccCCCCCeEEEecCcceEEe-cCCCcCHHHHHHhhcccC
Q 005762 401 K-ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GGAFVDLEKTISERRQDS 478 (678)
Q Consensus 401 k-l~~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~g~~~~~~~~~i~idtsNilfI~-tGaf~~Le~~i~~r~~~~ 478 (678)
. +... .+++|++.||.- ..+.+||+ ++.....+
T Consensus 87 ~kl~~~--------------~~~aLl~~le~p---------------------~~~~~~il~~~~~~~~~---------- 121 (343)
T 1jr3_D 87 NGPNAA--------------INEQLLTLTGLL---------------------HDDLLLIVRGNKLSKAQ---------- 121 (343)
T ss_dssp SCCCTT--------------HHHHHHHHHTTC---------------------BTTEEEEEEESCCCTTT----------
T ss_pred CCCChH--------------HHHHHHHHHhcC---------------------CCCeEEEEEcCCCChhh----------
Confidence 8 7665 899999999830 11223333 32211000
Q ss_pred CCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhchHHHHHHHHHHHH
Q 005762 479 SIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (678)
Q Consensus 479 ~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ln~L~~q~~~~~ 558 (678)
.... +.+.+.+|. .++.|.+++.+++.+.+... +
T Consensus 122 ----------------~~~k------------------~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~-----------~ 155 (343)
T 1jr3_D 122 ----------------ENAA------------------WFTALANRS-VQVTCQTPEQAQLPRWVAAR-----------A 155 (343)
T ss_dssp ----------------TTSH------------------HHHHHTTTC-EEEEECCCCTTHHHHHHHHH-----------H
T ss_pred ----------------HhhH------------------HHHHHHhCc-eEEEeeCCCHHHHHHHHHHH-----------H
Confidence 0001 222333444 36899999999988876631 2
Q ss_pred hcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005762 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (678)
Q Consensus 559 ~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~ 598 (678)
...| +.+++++++.|++.+ +.+.|.+.+.++++..
T Consensus 156 ~~~g--~~i~~~a~~~l~~~~---~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 156 KQLN--LELDDAANQVLCYCY---EGNLLALAQALERLSL 190 (343)
T ss_dssp HHTT--CEECHHHHHHHHHSS---TTCHHHHHHHHHHHHH
T ss_pred HHcC--CCCCHHHHHHHHHHh---chHHHHHHHHHHHHHH
Confidence 2234 459999999999985 6678888898888754
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.27 E-value=1.4e-06 Score=82.05 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 401 (678)
...++|+||+|+|||+|++++++.+ +...+.++..++... . + ...+.+|+|||++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----~--------~--------~~~~~lLilDE~~~ 94 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----D--------A--------AFEAEYLAVDQVEK 94 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----G--------G--------GGGCSEEEEESTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----H--------H--------HhCCCEEEEeCccc
Confidence 4689999999999999999999988 666888888776532 0 0 12457999999998
Q ss_pred hhhhhccccccCCCchhHHHHHHHHHHh
Q 005762 402 ITKKAESLNISRDVSGEGVQQALLKMLE 429 (678)
Q Consensus 402 l~~~~~~~~~~~d~s~~~vq~~LL~~LE 429 (678)
+... .++.|+++++
T Consensus 95 ~~~~--------------~~~~l~~li~ 108 (149)
T 2kjq_A 95 LGNE--------------EQALLFSIFN 108 (149)
T ss_dssp CCSH--------------HHHHHHHHHH
T ss_pred cChH--------------HHHHHHHHHH
Confidence 7654 3666777765
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.19 E-value=2.6e-06 Score=111.89 Aligned_cols=150 Identities=20% Similarity=0.256 Sum_probs=94.5
Q ss_pred CcEEEEcCCCcHHHHHHH-HHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhh----c----hhHhh----hcCc
Q 005762 326 SNVLLMGPTGSGKTLLAK-TLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA----E----FNVEA----AQQG 392 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAr-alA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a----~----~~v~~----a~~g 392 (678)
.++||+||||||||.+++ .+++..+.+++.++++.-+.+ ..+...+... . +.+-. .+..
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 689999999999997764 455555667888999876632 3333333321 0 11111 2235
Q ss_pred EEEEcCccchhhhhccccccCCCchhHHHHHHHHHHh-cceeecCCCCcccCCCCCeEEEecCcceEEecCCCcCHHHHH
Q 005762 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTI 471 (678)
Q Consensus 393 ILfIDEIDkl~~~~~~~~~~~d~s~~~vq~~LL~~LE-g~~v~v~~~g~~~~~~~~~i~idtsNilfI~tGaf~~Le~~i 471 (678)
||||||++.-..+. ...+.+...|.++|| +..+. +.. .-.+...++.||+|.|..+-
T Consensus 1377 VlFiDDiNmp~~D~--------yGtQ~~ielLrqlld~~g~yd-~~~---------~~~~~i~d~~~vaamnPp~~---- 1434 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDK--------YGTQRVITFIRQMVEKGGFWR-TSD---------HTWIKLDKIQFVGACNPPTD---- 1434 (3245)
T ss_dssp EEEETTTTCCCCCT--------TSCCHHHHHHHHHHHHSEEEE-TTT---------TEEEEESSEEEEEEECCTTS----
T ss_pred EEEecccCCCCccc--------cccccHHHHHHHHHHcCCeEE-CCC---------CeEEEecCeEEEEEcCCCCC----
Confidence 99999999644321 111248888999999 54442 111 12334578888887664310
Q ss_pred HhhcccCCCCcCcccccccccCCCchHhHHHHHhhcchhhhhhhcCCcccccccceEEecCCcCHHHHHHHHhch
Q 005762 472 SERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (678)
Q Consensus 472 ~~r~~~~~igF~~~~~~~~~~~~~~~~~~~~ll~~v~~edLi~~g~~Pefl~R~~~iv~f~~LseeeL~~Il~~~ 546 (678)
- + ...+.|.|++||.. +.++.++.+++..|....
T Consensus 1435 --------g--G------------------------------r~~l~~Rf~r~F~v-i~i~~ps~esL~~If~ti 1468 (3245)
T 3vkg_A 1435 --------A--G------------------------------RVQLTHRFLRHAPI-LLVDFPSTSSLTQIYGTF 1468 (3245)
T ss_dssp --------T--T------------------------------CCCCCHHHHTTCCE-EECCCCCHHHHHHHHHHH
T ss_pred --------C--C------------------------------CccCCHHHHhhceE-EEeCCCCHHHHHHHHHHH
Confidence 0 0 11267788888877 689999999999997753
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.14 E-value=1.1e-05 Score=83.46 Aligned_cols=77 Identities=25% Similarity=0.420 Sum_probs=48.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhh-hcCcEEEEcCccchh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA-AQQGMVYIDEVDKIT 403 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~-a~~gILfIDEIDkl~ 403 (678)
+.+++|+||||||||++|++||+.+.. +..++.+. ..+ .+.. ...-|+++||... .
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~---~~f------------------~l~~~~~k~i~l~Ee~~~-~ 160 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN---ENF------------------PFNDCVDKMVIWWEEGKM-T 160 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC---SSC------------------TTGGGSSCSEEEECSCCE-E
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc---ccc------------------ccccccccEEEEeccccc-h
Confidence 467999999999999999999998643 22333221 100 0111 1234666666664 3
Q ss_pred hhhccccccCCCchhHHHHHHHHHHhcceeecCCC
Q 005762 404 KKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 438 (678)
Q Consensus 404 ~~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~~ 438 (678)
.+ +++.|..+++|..+.++.+
T Consensus 161 ~d--------------~~~~lr~i~~G~~~~id~K 181 (267)
T 1u0j_A 161 AK--------------VVESAKAILGGSKVRVDQK 181 (267)
T ss_dssp TT--------------THHHHHHHHTTCCEEC---
T ss_pred hH--------------HHHHHHHHhCCCcEEEecC
Confidence 33 6778899999877776544
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.06 E-value=2.4e-06 Score=85.24 Aligned_cols=80 Identities=13% Similarity=0.270 Sum_probs=50.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 404 (678)
+.++||+||||||||++|.+||+.+....+....+. ..+ . +.. .....||+|||++.-..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f-----~------l~~------l~~~kIiiLDEad~~~~ 117 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHF-----W------LEP------LTDTKVAMLDDATTTCW 117 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCG-----G------GGG------GTTCSSEEEEEECHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chh-----h------hcc------cCCCCEEEEECCCchhH
Confidence 357999999999999999999999865432211110 000 0 000 01235999999985321
Q ss_pred hhccccccCCCchhHHHHHHHHHHhcceeecCC
Q 005762 405 KAESLNISRDVSGEGVQQALLKMLEGTIVNVPE 437 (678)
Q Consensus 405 ~~~~~~~~~d~s~~~vq~~LL~~LEg~~v~v~~ 437 (678)
. .+...+..+|+|..+.++.
T Consensus 118 ~-------------~~d~~lrn~ldG~~~~iD~ 137 (212)
T 1tue_A 118 T-------------YFDTYMRNALDGNPISIDR 137 (212)
T ss_dssp H-------------HHHHHCHHHHHTCCEEEC-
T ss_pred H-------------HHHHHHHHHhCCCcccHHH
Confidence 1 2567889999987666543
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.03 E-value=1.3e-06 Score=91.83 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=31.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC----CCEEEEeccccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTLT 362 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~----~~fv~id~s~l~ 362 (678)
..+++|+||||||||+||++||+.+. .+++.+++.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 36899999999999999999998764 677777776554
No 99
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.02 E-value=9.2e-06 Score=102.08 Aligned_cols=101 Identities=23% Similarity=0.233 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccc-----------cccccc----chHHHHHHHHHhhchhH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ-----------AGYVGE----DVESILYKLLAQAEFNV 386 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~-----------sgyvG~----~~~~~l~~l~~~a~~~v 386 (678)
.+.+||+||||||||+||++++... +.|.+.++..++.. ..|+++ + +..++.++..+
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~-e~~l~~~~~~a---- 1156 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG-EQALEICDALA---- 1156 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHHHH----
T ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccch-HHHHHHHHHHH----
Confidence 3459999999999999999999766 56766677665331 234555 3 66676666544
Q ss_pred hhhcCcEEEEcCccchhhhhccc-ccc-CC-CchhHHHHHHHHHHhc
Q 005762 387 EAAQQGMVYIDEVDKITKKAESL-NIS-RD-VSGEGVQQALLKMLEG 430 (678)
Q Consensus 387 ~~a~~gILfIDEIDkl~~~~~~~-~~~-~d-~s~~~vq~~LL~~LEg 430 (678)
....+++||+||++.|.+.++.. ..+ .+ .-.+.+.+.+|..|++
T Consensus 1157 r~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1157 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 33478999999999999985421 111 11 1124467778887775
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.79 E-value=0.00019 Score=94.78 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=52.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccchhhh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 405 (678)
.+..+.||+|||||++++.+|+.++.+++.++|++-.. ...+.++|...- ..++..++|||+++...
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d--------~~~~g~i~~G~~-----~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD--------LQAMSRIFVGLC-----QCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC--------HHHHHHHHHHHH-----HHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC--------HHHHHHHHhhHh-----hcCcEEEehhhhcCCHH
Confidence 45689999999999999999999999999999987542 223344443321 14578999999999876
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.64 E-value=3.1e-05 Score=82.25 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=44.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC--CCEEEEeccccccccccccchHHHHHHHHHhhchhHhhhcCcEEEEcCccch
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN--VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~--~~fv~id~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 402 (678)
...++|+||||||||+||..+|...+ +.|+.+...+... .|. .+.+..+..+... +.. .+ +||||||+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~-~~~-~~le~~l~~i~~~----l~~-~~-LLVIDsI~aL 194 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYN-TDFNVFVDDIARA----MLQ-HR-VIVIDSLKNV 194 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST-TCB-CCHHHHHHHHHHH----HHH-CS-EEEEECCTTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh-hhh-cCHHHHHHHHHHH----Hhh-CC-EEEEeccccc
Confidence 45679999999999999999997654 3466663232221 121 2324443333332 222 22 9999999998
Q ss_pred hhh
Q 005762 403 TKK 405 (678)
Q Consensus 403 ~~~ 405 (678)
...
T Consensus 195 ~~~ 197 (331)
T 2vhj_A 195 IGA 197 (331)
T ss_dssp C--
T ss_pred ccc
Confidence 654
No 102
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=97.40 E-value=0.00047 Score=60.29 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=70.1
Q ss_pred CCcCHHHHHHHHhchHHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 005762 532 TALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKTGS 611 (678)
Q Consensus 532 ~~LseeeL~~Il~~~ln~L~~q~~~~~~~~gv~l~~t~eal~~La~~a~~~~~GAR~Lr~iIE~il~~a~~~~p~~~~~~ 611 (678)
+.++++|..+|.+. .|+.+..+.......++.|+++++..|.+. |..+.|+|+|++.|..++..+..++....
T Consensus 1 sGYt~~EK~~IAk~---~LiPkql~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i~~~~--- 73 (94)
T 1qzm_A 1 SGYTEDEKLNIAKR---HLLPKQIERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQLLLDK--- 73 (94)
T ss_dssp CCCCHHHHHHHHHH---THHHHHHHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHTCT---
T ss_pred CCCCHHHHHHHHHH---hccHHHHHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHHHHcC---
Confidence 36899999999997 477776676677777899999999999997 88999999999999999999998876411
Q ss_pred CCcceEEEcccccC
Q 005762 612 DGVDAVVVDEESVG 625 (678)
Q Consensus 612 ~~i~~v~v~~e~v~ 625 (678)
....+.|+.+.+.
T Consensus 74 -~~~~v~v~~~~l~ 86 (94)
T 1qzm_A 74 -SLKHIEINGDNLH 86 (94)
T ss_dssp -TCCCEEECTTTTH
T ss_pred -CCCCeeECHHHHH
Confidence 1246788887664
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.30 E-value=0.00036 Score=88.93 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=51.3
Q ss_pred ccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc---cccc-----------cchHHHHHHHHHhhchh
Q 005762 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVG-----------EDVESILYKLLAQAEFN 385 (678)
Q Consensus 323 ~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s---gyvG-----------~~~~~~l~~l~~~a~~~ 385 (678)
.+..+++|+||||||||+||.+++..+ +...+.+++...... ...| ...+..+. .....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~----~~~~l 1500 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE----ICDAL 1500 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHH----HHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHH----HHHHH
Confidence 356899999999999999999998765 456667776643211 0112 01122222 22233
Q ss_pred HhhhcCcEEEEcCccchhhh
Q 005762 386 VEAAQQGMVYIDEVDKITKK 405 (678)
Q Consensus 386 v~~a~~gILfIDEIDkl~~~ 405 (678)
++...+.+|||||++.+.+.
T Consensus 1501 vr~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp HHHTCCSEEEESCGGGCCCH
T ss_pred HhcCCCCEEEEcChhHhccc
Confidence 44557789999999988774
No 104
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.28 E-value=0.00012 Score=69.62 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
..+|+|+|+||+||||+|+.||+.++.+|+..|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 3679999999999999999999999999876543
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.25 E-value=0.00016 Score=68.36 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=31.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~ 360 (678)
..|+|+|+||+||||+|+.|++.++.+|+.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 56999999999999999999999999998776543
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.19 E-value=0.00082 Score=64.90 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.9
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
.+.|+||+|+|||||++.|+..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 488999999999999999999986544
No 107
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.16 E-value=0.00065 Score=74.86 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=22.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.+++|.|+||||||+++..++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999877
No 108
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.00024 Score=68.95 Aligned_cols=33 Identities=45% Similarity=0.731 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
...|+|+|+||+||||+++.||+.++.+|+..|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 358999999999999999999999999887554
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.08 E-value=0.0003 Score=65.56 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=28.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
.|+|.|+||+||||+++.|++.++.+|+..|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 58999999999999999999999988866553
No 110
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.08 E-value=0.00024 Score=66.73 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=29.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.+|+|.|++|+||||+++.||+.++.+|+..|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 68999999999999999999999999987543
No 111
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.06 E-value=0.00053 Score=67.70 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=27.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh--------C-CCEEEEeccccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV--------N-VPFVIADATTLT 362 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l--------~-~~fv~id~s~l~ 362 (678)
...|++|+||||||++|..++... + .+++..++.+|.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~ 51 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLK 51 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcc
Confidence 468999999999999998865432 3 666667766554
No 112
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.03 E-value=0.00026 Score=67.00 Aligned_cols=29 Identities=38% Similarity=0.717 Sum_probs=26.8
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
+++|.|+||+||||+|+.||+.++.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 69999999999999999999999988764
No 113
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.01 E-value=0.00033 Score=66.62 Aligned_cols=32 Identities=31% Similarity=0.577 Sum_probs=28.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
..|+|+|+||+||||+|+.||+.++.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35999999999999999999999999886544
No 114
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.96 E-value=0.00037 Score=66.19 Aligned_cols=32 Identities=38% Similarity=0.589 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
...|+|+|+||+||||+++.|++.++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 46799999999999999999999998877643
No 115
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.92 E-value=0.0004 Score=65.20 Aligned_cols=30 Identities=37% Similarity=0.772 Sum_probs=26.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
..++|+||+|+||||+++.||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 579999999999999999999999876653
No 116
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.89 E-value=0.00085 Score=65.06 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++++||+|+||||++..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999986555443
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.88 E-value=0.00043 Score=65.89 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
+..|+|.|+||+||||+++.|++.++.+++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 35799999999999999999999998887654
No 118
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.85 E-value=0.00043 Score=66.46 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH-hCCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH-VNVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~-l~~~fv~id 357 (678)
..+|+|+|+||+||||+++.||+. ++.+++.+|
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 357999999999999999999999 676665443
No 119
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.82 E-value=0.00062 Score=65.88 Aligned_cols=33 Identities=36% Similarity=0.627 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
+..|+|+|+||+||||+|+.|++.++.+++.+|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 357999999999999999999999998876543
No 120
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.79 E-value=0.00057 Score=64.01 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=27.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
..|+|.|+||+||||+|+.||+.++.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 36999999999999999999999998776433
No 121
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.77 E-value=0.0006 Score=65.09 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
...|+|.|+||+||||+|+.||+.++.+++..|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 357999999999999999999999988766444
No 122
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.76 E-value=0.00056 Score=63.28 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=25.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
..|+|.|+||+||||+|+.| +.++.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 35899999999999999999 8888877653
No 123
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.76 E-value=0.00075 Score=68.60 Aligned_cols=33 Identities=39% Similarity=0.486 Sum_probs=29.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s 359 (678)
.++|.||||+||||+|+.||+.++.+++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 489999999999999999999999988877664
No 124
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.75 E-value=0.00057 Score=64.86 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=26.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
..|+|.|+||+||||+|+.|++.++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 569999999999999999999999877654
No 125
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.75 E-value=0.00083 Score=65.02 Aligned_cols=33 Identities=30% Similarity=0.651 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
...|+|.|++|+||||+|+.|++.++..++..|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 357999999999999999999999987776543
No 126
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.71 E-value=0.00073 Score=63.03 Aligned_cols=31 Identities=35% Similarity=0.605 Sum_probs=27.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.|+|.|++|+||||+|+.|++.++.+++..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4899999999999999999999998887544
No 127
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.71 E-value=0.0056 Score=60.39 Aligned_cols=35 Identities=37% Similarity=0.462 Sum_probs=26.1
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHH--HH--hCCCEEEEec
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLA--RH--VNVPFVIADA 358 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA--~~--l~~~fv~id~ 358 (678)
+...++|.||+|+|||||++.|+ .. .+...+.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 35679999999999999999998 43 2444444444
No 128
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.70 E-value=0.0059 Score=61.30 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=24.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~i 356 (678)
.-++++||+|+||||++..++..+ +...+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 568999999999999998887666 4455555
No 129
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.68 E-value=0.00077 Score=66.26 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=27.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 5799999999999999999999998876554
No 130
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.66 E-value=0.00078 Score=65.81 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=27.2
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.|+|+|+||+||||+|+.|++.++.+++..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 4899999999999999999999988776553
No 131
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.64 E-value=0.00081 Score=64.32 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=27.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
..|+|.|+||+||||+|+.|++.++.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5799999999999999999999998665543
No 132
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.63 E-value=0.00089 Score=65.30 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=27.2
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.|+|+|+||+||||+|+.|++.++.+++..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 4899999999999999999999988776553
No 133
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.61 E-value=0.00087 Score=63.89 Aligned_cols=36 Identities=39% Similarity=0.495 Sum_probs=31.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
..++|.||+|+||||+++.|+..++...+.++..++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 569999999999999999999988778888876654
No 134
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.60 E-value=0.0007 Score=64.27 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
..|+|.|+||+||||+++.||+.++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 469999999999999999999999876543
No 135
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.59 E-value=0.0036 Score=63.58 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=30.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH---hCCCEEEEeccccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH---VNVPFVIADATTLT 362 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~---l~~~fv~id~s~l~ 362 (678)
..|+|.|+||+||||+|+.|++. .+.+++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 46999999999999999999998 67888867665443
No 136
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.59 E-value=0.00084 Score=63.57 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=27.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
..|+|.|+||+||||+|+.|++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4699999999999999999999998766544
No 137
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.00075 Score=63.92 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=23.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..|+|.|+||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999886
No 138
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.57 E-value=0.0034 Score=61.76 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH--h-------CCCEEEEeccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH--V-------NVPFVIADATT 360 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~--l-------~~~fv~id~s~ 360 (678)
...++|+||||+|||++++.++.. + +...+.++...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 467999999999999999999984 3 34566676654
No 139
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.56 E-value=0.001 Score=66.30 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
...|+|.|+||+||||+|+.||+.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35799999999999999999999999777654
No 140
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.55 E-value=0.0011 Score=62.64 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=23.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
..|+|.|+||+||||+|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 57999999999999999999999999887
No 141
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.52 E-value=0.00061 Score=63.91 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH-HhCCCE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR-HVNVPF 353 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~-~l~~~f 353 (678)
..|+|.|+||+||||+|+.|++ .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4689999999999999999999 454433
No 142
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.52 E-value=0.0032 Score=71.63 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id 357 (678)
...++|.|+||||||+++..++..+ +.+++.+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 4689999999999999999998876 45555443
No 143
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.50 E-value=0.001 Score=65.78 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=27.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
..|+|.|+||+||||+|+.||+.++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5799999999999999999999998776644
No 144
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.48 E-value=0.0012 Score=62.07 Aligned_cols=34 Identities=35% Similarity=0.595 Sum_probs=27.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
..++|+|++|+||||+++.|++.++..++ +..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 56999999999999999999999876554 44443
No 145
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.47 E-value=0.0012 Score=65.07 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=27.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
..|+|.|+||+||||+|+.||+.++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999998877654
No 146
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.46 E-value=0.00089 Score=65.89 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=26.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
..|+|.|+||+||||+++.||+.++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 579999999999999999999999876543
No 147
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.45 E-value=0.0012 Score=63.80 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=27.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
..|+|.|++|+||||+|+.|++.++.+++..|
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 46999999999999999999999987665544
No 148
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.44 E-value=0.007 Score=60.69 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=28.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s 359 (678)
.+++++||+|+|||.+|..++..++.+.+.+-.+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4599999999999999999998887766666544
No 149
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.44 E-value=0.0013 Score=64.36 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=26.9
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
.|+|.|+||+||||+|+.|++.++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998877654
No 150
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.43 E-value=0.0053 Score=59.61 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
...++|+||+|+|||++++.++..+ +.+.+.++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4678999999999999999999655 445555543
No 151
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.40 E-value=0.004 Score=60.28 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~ 360 (678)
...++|+||||+|||++++.++...+.+.+.++...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 467899999999999999999985566777777653
No 152
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.39 E-value=0.0037 Score=63.17 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
+..++|.|+||+||||+|+.|++.++..++.+|...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 46799999999999999999999998666777776653
No 153
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.39 E-value=0.0025 Score=60.44 Aligned_cols=31 Identities=29% Similarity=0.254 Sum_probs=28.0
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l---~~~fv~id 357 (678)
.|+|+|++|+||||+++.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48999999999999999999988 88888765
No 154
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.38 E-value=0.0019 Score=63.99 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=27.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
.|+|.||||+||+|.|+.||+.++.+. ++..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence 489999999999999999999998765 454444
No 155
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.36 E-value=0.0014 Score=65.98 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
+..|+|+||||+||||+|+.|++.++.+++.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 357999999999999999999999987665443
No 156
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.35 E-value=0.0027 Score=60.13 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=31.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l 361 (678)
..++|+|++|+||||+++.|++.+ +.+++.+|...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 568999999999999999999998 889998886543
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.34 E-value=0.0018 Score=62.83 Aligned_cols=35 Identities=37% Similarity=0.632 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
...++|.||+|+||||+++.|++.++..+ ++..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 35799999999999999999999997644 454443
No 158
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.33 E-value=0.024 Score=57.19 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
+.++++.|+||||||+++-.+|..+ +...+.++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3679999999999999999988776 566665555
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.29 E-value=0.0018 Score=63.44 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=26.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
..+.|.||+|+||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46999999999999999999999987664
No 160
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.28 E-value=0.0049 Score=60.13 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.5
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHh
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l 349 (678)
.+.|+||+|+||||+++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999999887
No 161
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.26 E-value=0.002 Score=68.29 Aligned_cols=36 Identities=36% Similarity=0.581 Sum_probs=31.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
..++|+||||+|||+||+.||+.++..++.+|...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 479999999999999999999999988888876543
No 162
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.22 E-value=0.0065 Score=64.86 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=47.2
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccccc---ccccchH-------HHHHHHHHhhchhHhhhc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGEDVE-------SILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sg---yvG~~~~-------~~l~~l~~~a~~~v~~a~ 390 (678)
+...++|+||||+|||+||..++..+ +.+.+.++...-...- ..|.+.. ..+.+.+......+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 45679999999999999999988654 4566667665321110 0111100 001122222222222335
Q ss_pred CcEEEEcCccchhh
Q 005762 391 QGMVYIDEVDKITK 404 (678)
Q Consensus 391 ~gILfIDEIDkl~~ 404 (678)
..+|+||++..+..
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 68999999999874
No 163
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.21 E-value=0.0022 Score=64.19 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
+..|+|.||||+||+|.|+.|++.++.+. ++..++.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 35688999999999999999999997654 4554443
No 164
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.18 E-value=0.0026 Score=60.75 Aligned_cols=28 Identities=14% Similarity=0.522 Sum_probs=25.5
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
.|+|.|++|+||||+++.||+.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4899999999999999999999987665
No 165
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.16 E-value=0.0021 Score=63.68 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=25.9
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
.|+|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998765443
No 166
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.15 E-value=0.002 Score=62.20 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=25.9
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.|.|+|++|+||||+++.|++ ++.+++..|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 887665544
No 167
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.14 E-value=0.0027 Score=61.02 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=27.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.|.|.|++|+||||+++.||+.++.+++..|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6899999999999999999999998876544
No 168
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.10 E-value=0.0032 Score=60.43 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=28.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-CCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-~~~fv~id~ 358 (678)
..|+|.|++|+||||+++.|++.+ +.+++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 579999999999999999999998 577776653
No 169
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.09 E-value=0.0043 Score=59.07 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=26.6
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
|+|.|++|+||||+++.|++.+ +.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7999999999999999999999 888875543
No 170
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0027 Score=64.85 Aligned_cols=32 Identities=38% Similarity=0.580 Sum_probs=28.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
..++|+|++|+||||+++.||+.++.+|+..|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 67999999999999999999999998876544
No 171
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.04 E-value=0.0022 Score=60.61 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=26.5
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEecc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVN---VPFVIADAT 359 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s 359 (678)
.|+|.|+||+||||+|+.|++.++ .++..++..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 589999999999999999999885 235555543
No 172
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.02 E-value=0.0033 Score=65.20 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
+..++|.||||+||||+|+.|++.+...++.+|+..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 3579999999999999999999988555667776443
No 173
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.02 E-value=0.0025 Score=61.69 Aligned_cols=30 Identities=47% Similarity=0.586 Sum_probs=25.8
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.+.|+|++|+||||+++.|++ ++.+++..|
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 589999999999999999998 787776433
No 174
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.00 E-value=0.0022 Score=68.47 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=31.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
..|+|.||+|+|||+|+..||+.++..++..|.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 479999999999999999999999988877776643
No 175
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.00 E-value=0.0028 Score=60.65 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
+..|.|.|++|+||||+++.||+. +.+++..|
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 357999999999999999999998 77765433
No 176
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.98 E-value=0.011 Score=57.48 Aligned_cols=25 Identities=48% Similarity=0.531 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||++.|+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999855
No 177
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.98 E-value=0.016 Score=62.28 Aligned_cols=77 Identities=21% Similarity=0.196 Sum_probs=47.9
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc------cc--------cccchHHHHHHHHHhhchhH
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA------GY--------VGEDVESILYKLLAQAEFNV 386 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s------gy--------vG~~~~~~l~~l~~~a~~~v 386 (678)
+...++|+||||+|||+|+..++..+ +.+.+.++....... ++ .....+. .+......+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~----~l~~~~~l~ 135 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ----ALEIVDELV 135 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH----HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH----HHHHHHHHh
Confidence 35679999999999999999999775 556777776542210 00 0111122 222222222
Q ss_pred hhhcCcEEEEcCccchhh
Q 005762 387 EAAQQGMVYIDEVDKITK 404 (678)
Q Consensus 387 ~~a~~gILfIDEIDkl~~ 404 (678)
......+|+||.+..+.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 234567999999998875
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.93 E-value=0.0057 Score=59.20 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l 361 (678)
...+.|.||+|+||||+++.|++.+ +...+.+|...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3679999999999999999999998 544445665544
No 179
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.87 E-value=0.0023 Score=61.87 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
+..|+|.|++|+||||+++.|++.++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 35799999999999999999999886554433
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.85 E-value=0.0044 Score=67.00 Aligned_cols=31 Identities=35% Similarity=0.341 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
...++|+||||+||||++++|+..++..++.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 4689999999999999999999988765543
No 181
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.82 E-value=0.0038 Score=61.06 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=27.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
..|.|+|++|+||||+++.|++.++.+++..|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 56899999999999999999999887775433
No 182
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.80 E-value=0.0069 Score=58.16 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=24.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
..|+|.|+||+||||+|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 468999999999999999999998763
No 183
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.75 E-value=0.011 Score=57.61 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=29.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC----CCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~----~~fv~id~s~l 361 (678)
..++|.|++|+||||+++.|++.++ .+++.++...+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 5789999999999999999999874 56777775443
No 184
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.73 E-value=0.015 Score=61.00 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=29.8
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---------CCCEEEEeccc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---------NVPFVIADATT 360 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---------~~~fv~id~s~ 360 (678)
+...++|+||||+|||++|..+|..+ +.+.+.++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45689999999999999999999765 44667777654
No 185
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.72 E-value=0.0062 Score=61.59 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
+..+.|.||+|+||||+++.||+.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4579999999999999999999999876643
No 186
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.71 E-value=0.023 Score=55.73 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
...++|.||||+|||+++..++..+ +.+.+.++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4678999999999999998877543 4455555543
No 187
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.69 E-value=0.0029 Score=61.11 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
+..|+|.|++|+||||+++.|++.++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999875433
No 188
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.69 E-value=0.025 Score=62.21 Aligned_cols=36 Identities=31% Similarity=0.289 Sum_probs=28.8
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
.+..++|.||+|+||||++..||..+ +.....+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 35789999999999999999999877 5555555544
No 189
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.63 E-value=0.0055 Score=59.77 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=27.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
..+.|+|++|+|||++++.|++.++.+++..|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 47999999999999999999999988775433
No 190
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.63 E-value=0.007 Score=60.53 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
+..++|.||+|+||||+++.|++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 357999999999999999999999876543
No 191
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.61 E-value=0.017 Score=61.79 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=22.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+++.||+|+||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 579999999999999999999887
No 192
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.59 E-value=0.025 Score=60.63 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=47.6
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccccc---ccccc----------hHHHHHHHHHhhchhHh
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGED----------VESILYKLLAQAEFNVE 387 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sg---yvG~~----------~~~~l~~l~~~a~~~v~ 387 (678)
+...++|+|+||+|||++|..++..+ +.+.+.++.......- -.|.+ ....+..++. ..+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~---~l~~ 138 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---ALAR 138 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH---HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHH---HHHh
Confidence 45679999999999999999988665 5677778774321100 00111 0111222221 1222
Q ss_pred hhcCcEEEEcCccchhh
Q 005762 388 AAQQGMVYIDEVDKITK 404 (678)
Q Consensus 388 ~a~~gILfIDEIDkl~~ 404 (678)
.....+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 34567999999998875
No 193
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.57 E-value=0.0049 Score=60.24 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=26.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
..|.|.|++|+||||+++.|++ ++.+++..|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4699999999999999999999 777665443
No 194
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.57 E-value=0.016 Score=61.71 Aligned_cols=37 Identities=35% Similarity=0.396 Sum_probs=29.5
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhC---------CCEEEEeccc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVN---------VPFVIADATT 360 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~---------~~fv~id~s~ 360 (678)
+...+.|+||+|+|||+|++.++..+. ...+.++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 456789999999999999999998872 3446777654
No 195
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.56 E-value=0.0056 Score=64.62 Aligned_cols=36 Identities=39% Similarity=0.620 Sum_probs=31.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
..++|.||+|+|||+||..||+.++..++..|...+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 468999999999999999999999888777776544
No 196
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.53 E-value=0.0074 Score=64.82 Aligned_cols=30 Identities=33% Similarity=0.577 Sum_probs=27.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
.+++|+|++|+||||++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888754
No 197
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.53 E-value=0.0063 Score=60.54 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
...+.|.|++|+||||+++.||+.++.+++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 4679999999999999999999999877653
No 198
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.52 E-value=0.0092 Score=60.04 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=30.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC--------EEEEeccccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP--------FVIADATTLT 362 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~--------fv~id~s~l~ 362 (678)
..|.|.|++|+||||+|+.|++.++.+ .+.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 569999999999999999999999876 3456776654
No 199
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.51 E-value=0.017 Score=62.16 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=47.4
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccccccc---ccccchH-------HHHHHHHHhhchhHhhhc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGEDVE-------SILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~sg---yvG~~~~-------~~l~~l~~~a~~~v~~a~ 390 (678)
....++|+||||+|||++|..++..+ +.+.+.++...-...- -.|.+.. ..+..++......+....
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 45679999999999999999888654 5677777765321110 0111100 001122222222222335
Q ss_pred CcEEEEcCccchhh
Q 005762 391 QGMVYIDEVDKITK 404 (678)
Q Consensus 391 ~gILfIDEIDkl~~ 404 (678)
..+||||.+..+..
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 67999999998874
No 200
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.47 E-value=0.024 Score=54.33 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=20.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
.++++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999998877754
No 201
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.42 E-value=0.0095 Score=60.22 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv 354 (678)
...+.|.||+|+||||+++.||+.++.+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 357999999999999999999999987664
No 202
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.41 E-value=0.012 Score=55.97 Aligned_cols=36 Identities=33% Similarity=0.342 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEeccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATT 360 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~ 360 (678)
...++|.|++|+||||+++.|++.++ .+++.++...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 46799999999999999999999883 4455565443
No 203
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.37 E-value=0.0068 Score=64.10 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=29.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l 361 (678)
..++|.||+|+|||+||..||+.++..++..|...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 468999999999999999999999877666665543
No 204
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.31 E-value=0.0089 Score=58.01 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...++|.||||+||||+++.|++.+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46799999999999999999999884
No 205
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.30 E-value=0.027 Score=59.50 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=42.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC--CCEEEEeccc-ccc------cccc---ccchHHHHHHHHHhhchhHhhhcCcE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVIADATT-LTQ------AGYV---GEDVESILYKLLAQAEFNVEAAQQGM 393 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~--~~fv~id~s~-l~~------sgyv---G~~~~~~l~~l~~~a~~~v~~a~~gI 393 (678)
..++|.||+|+||||++++|+..+. ...+.++... +.- .+|+ |.. .+..+..+. ...+.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~----~r~~la~aL----~~~p~i 243 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNIT----SADCLKSCL----RMRPDR 243 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBC----HHHHHHHHT----TSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChh----HHHHHHHHh----hhCCCE
Confidence 6899999999999999999999884 3445555432 110 0122 222 222222222 136789
Q ss_pred EEEcCccc
Q 005762 394 VYIDEVDK 401 (678)
Q Consensus 394 LfIDEIDk 401 (678)
|++||+-.
T Consensus 244 lildE~~~ 251 (330)
T 2pt7_A 244 IILGELRS 251 (330)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCh
Confidence 99999875
No 206
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.28 E-value=0.22 Score=55.90 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHH
Q 005762 276 IGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 276 vGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~ 347 (678)
+|.+..++.|...+... .. .....+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~------~~----------------------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM------CD----------------------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH------TT----------------------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc------cC----------------------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 69999999988877411 00 0125789999999999999999997
No 207
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.28 E-value=0.038 Score=60.98 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=30.2
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~ 360 (678)
.+..++|.|++|+||||++..||..+ +.....+++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35789999999999999999999877 55666666653
No 208
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.28 E-value=0.0051 Score=63.12 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=25.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-CCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-~~~fv~id 357 (678)
..|+|.|+||+||||+|+.|++.+ +.+++..|
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 468999999999999999999964 55554443
No 209
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.21 E-value=0.0082 Score=64.05 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=28.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s 359 (678)
..|+|.||+|+|||++|+.||+.++..++..|.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4689999999999999999999998666555543
No 210
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.20 E-value=0.0056 Score=59.34 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=26.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-CCCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-~~~fv~id~s~l 361 (678)
..+.|.|++|+||||+++.|++.+ +..+ ++..++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~--i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSV--ISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEE--EEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEE--EeCCcc
Confidence 568999999999999999999987 4444 444443
No 211
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.18 E-value=0.028 Score=64.31 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+++.|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3679999999999999988776554
No 212
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.12 E-value=0.029 Score=59.50 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=29.2
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---------CCCEEEEeccc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---------NVPFVIADATT 360 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---------~~~fv~id~s~ 360 (678)
+...++|+||||+|||++|..+|... +.+.+.++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35678999999999999999999863 34566777654
No 213
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.08 E-value=0.012 Score=56.14 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...++|.||+|+|||||++.|++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35789999999999999999999764
No 214
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.08 E-value=0.024 Score=60.07 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=45.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEeccccccc---ccccc-----------chHHHHHHHHHhhchhH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQA---GYVGE-----------DVESILYKLLAQAEFNV 386 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l-----~~~fv~id~s~l~~s---gyvG~-----------~~~~~l~~l~~~a~~~v 386 (678)
..++|+||||+|||+|+-.++..+ +...+.+|...-... .-.|. ..+.....+.... ..+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l-~~i 107 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL-DAI 107 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH-HTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH-HHh
Confidence 368999999999999987665433 456777887532110 00111 1122201121111 012
Q ss_pred hhhcCcEEEEcCccchhh
Q 005762 387 EAAQQGMVYIDEVDKITK 404 (678)
Q Consensus 387 ~~a~~gILfIDEIDkl~~ 404 (678)
....+.+|+||-|..+.+
T Consensus 108 ~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp CTTCCEEEEEECSTTCBC
T ss_pred hccCceEEEEeccccccc
Confidence 334678999999999975
No 215
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.06 E-value=0.014 Score=57.11 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=27.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
..|.|.|++|+|||++++.||+.++.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 569999999999999999999999999973
No 216
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.03 E-value=0.072 Score=52.46 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEe
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id 357 (678)
.+..|++++.+|.|||++|-.+|-.+ +.++..+.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35789999999999999999998655 55665553
No 217
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.01 E-value=0.01 Score=64.71 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=29.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s 359 (678)
..|+|.||+|+|||+||..||+.++..++..|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~ 36 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM 36 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCcc
Confidence 4689999999999999999999998776665554
No 218
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.99 E-value=0.011 Score=56.71 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=22.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+.|.||+|+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578999999999999999999987
No 219
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.95 E-value=0.015 Score=55.36 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=25.3
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~ 360 (678)
.++|.||+|+||||+++.|++.++. .+.++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 5899999999999999999986643 23444433
No 220
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.93 E-value=0.012 Score=57.50 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...++|.||+|+|||||++.|++.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35699999999999999999999874
No 221
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.92 E-value=0.013 Score=56.07 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=25.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s 359 (678)
..+.|.||+|+|||||++.|+..+. -+.++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~ 39 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA--EIKISIS 39 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS--SEEECCC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC--CeEEece
Confidence 5689999999999999999999863 3444443
No 222
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.83 E-value=0.0099 Score=57.57 Aligned_cols=25 Identities=44% Similarity=0.514 Sum_probs=23.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+.|.||+|+|||||++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999987
No 223
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.82 E-value=0.011 Score=60.94 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
+..|.|+|++|+||||+|+.|+ .++.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3569999999999999999999 577665443
No 224
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.81 E-value=0.0086 Score=59.42 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=32.1
Q ss_pred ccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccccc
Q 005762 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (678)
Q Consensus 321 v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~l~ 362 (678)
+......++|.||||+|||+||..|++..+ +++..|...+.
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~ 70 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVY 70 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEE
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhee
Confidence 344567899999999999999999999876 66666655443
No 225
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.79 E-value=0.05 Score=57.00 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
+..++|+||+|+||||++..||..+ +.....+++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4679999999999999999999877 445555554
No 226
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.72 E-value=0.052 Score=59.02 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=28.1
Q ss_pred ccCCcEEEEcCCCcHHHHHHHHHHHHh---------CCCEEEEeccc
Q 005762 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---------NVPFVIADATT 360 (678)
Q Consensus 323 ~~~~~iLL~GPpGtGKT~LAralA~~l---------~~~fv~id~s~ 360 (678)
.+...++|+||||+|||+|++.++-.. +...+.++..+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 345789999999999999999876433 23366677654
No 227
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.70 E-value=0.017 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3589999999999999999999874
No 228
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.62 E-value=0.034 Score=57.95 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.2
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
+...++|+||||+|||++|..+|..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999865
No 229
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.60 E-value=0.032 Score=70.55 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=51.5
Q ss_pred ccCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc---cccccch-------HHHHHHHHHhhchhHhhh
Q 005762 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDV-------ESILYKLLAQAEFNVEAA 389 (678)
Q Consensus 323 ~~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s---gyvG~~~-------~~~l~~l~~~a~~~v~~a 389 (678)
.+...++|+||||+|||+||..+|..+ +.+++.++..+.... ...|.+. ...+.+++......+...
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~ 809 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 809 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHcc
Confidence 356789999999999999999998766 446777776543211 0111100 011233333333333445
Q ss_pred cCcEEEEcCccchhh
Q 005762 390 QQGMVYIDEVDKITK 404 (678)
Q Consensus 390 ~~gILfIDEIDkl~~ 404 (678)
...+|+||++..+.+
T Consensus 810 ~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 810 AVDVIVVDSVAALTP 824 (1706)
T ss_dssp CCSEEEESCSTTCCC
T ss_pred CCCEEEEechhhhcc
Confidence 678999999999874
No 230
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.55 E-value=0.0091 Score=65.09 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
+..|+|+|+||+||||+|+.|++.++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4679999999999999999999988765543
No 231
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.49 E-value=0.042 Score=61.74 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEeccc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATT 360 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~ 360 (678)
.+..|+|+|.||+||||+|+.||+.++ .+...++..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 346799999999999999999999884 4444555544
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.42 E-value=0.046 Score=57.84 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.7
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
++..+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999887
No 233
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.36 E-value=0.021 Score=55.36 Aligned_cols=25 Identities=40% Similarity=0.650 Sum_probs=22.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+.|.||+|+|||||++.|++.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999874
No 234
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.32 E-value=0.018 Score=56.13 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||+++|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999999884
No 235
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.26 E-value=0.028 Score=64.64 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=32.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l 361 (678)
+..|+|+|.+|+||||+|+.|++.+ +.+++.+|...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 3569999999999999999999999 899999875433
No 236
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.25 E-value=0.038 Score=53.51 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=27.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
..+.|.|++|+||||+++.|+..+ +.+++.++..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 569999999999999999999887 5566555444
No 237
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.24 E-value=0.09 Score=51.29 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=23.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~i 356 (678)
.-.+++||.|+||||.+-.++..+ +...+.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 468999999999999888777665 4555444
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.09 E-value=0.091 Score=55.31 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
+..++|+|++|+||||++..||..+ +.....+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4679999999999999999999877 4566666654
No 239
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.06 E-value=0.032 Score=54.36 Aligned_cols=28 Identities=32% Similarity=0.585 Sum_probs=23.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~f 353 (678)
+.|+|.||+|+|||||++.|.+.....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 3589999999999999999987764434
No 240
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.06 E-value=0.14 Score=65.90 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=50.8
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEeccccccc---cccccc-------hHHHHHHHHHhhchhHhhhc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGED-------VESILYKLLAQAEFNVEAAQ 390 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s~l~~s---gyvG~~-------~~~~l~~l~~~a~~~v~~a~ 390 (678)
+...++|.|+||+|||+||..+|..+ +.+++.++..+.... ..+|.+ .+..+..++...........
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~ 810 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 810 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccC
Confidence 56789999999999999999999776 346888887643321 001110 01112223322222222345
Q ss_pred CcEEEEcCccchhh
Q 005762 391 QGMVYIDEVDKITK 404 (678)
Q Consensus 391 ~gILfIDEIDkl~~ 404 (678)
..+||||.+..+..
T Consensus 811 ~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 811 VDVIVVDSVAALTP 824 (2050)
T ss_dssp CSEEEESCGGGCCC
T ss_pred CCEEEEcchhhhcc
Confidence 68999999999875
No 241
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.03 E-value=0.016 Score=56.00 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.1
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
-|+|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999885
No 242
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.99 E-value=0.042 Score=60.64 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
+..|+|+|.||+||||+++.|++.++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999999998754
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.89 E-value=0.068 Score=55.80 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+||||+++.||..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999887
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.86 E-value=0.032 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=23.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+.|.||+|+|||||+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999999884
No 245
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.86 E-value=0.13 Score=53.58 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
...++|.|++|+||||++..||..+ +.....+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5678899999999999999999877 5566666664
No 246
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.86 E-value=0.18 Score=50.34 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=24.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
.-.+++||.|+||||.+-.++..+ +...+.+..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 346789999999999987777655 556655543
No 247
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.79 E-value=0.036 Score=61.59 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|+|++|+|||+|+..|+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 568999999999999999888654
No 248
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.71 E-value=0.027 Score=56.84 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=26.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEE
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~i 356 (678)
..+-|.|+||+||||+|+.|++.++.+++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3578999999999999999999998887643
No 249
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.69 E-value=0.13 Score=57.41 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCcHHHHHHHH--HHHHh--CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKT--LARHV--NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAra--lA~~l--~~~fv~id~s 359 (678)
...++|.||+|+|||||++. ++... +..-+.++..
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 46899999999999999999 55555 3445556554
No 250
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.67 E-value=0.037 Score=55.36 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
+..|.+.|++|||||++|+.||+.++.+|+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3579999999999999999999999999854
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.67 E-value=0.037 Score=54.60 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||++.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999999987
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.65 E-value=0.048 Score=53.64 Aligned_cols=26 Identities=19% Similarity=0.524 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...++|.||+|+|||||++.|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999998874
No 253
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.60 E-value=0.079 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.5
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
++..++|.||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35679999999999999999999987
No 254
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.50 E-value=0.062 Score=59.00 Aligned_cols=35 Identities=37% Similarity=0.491 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
+..++|+|++|+||||++..||..+ +.....+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4689999999999999999999877 4566666664
No 255
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.42 E-value=0.097 Score=51.51 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=25.8
Q ss_pred CcEEEEcCCCcHHH-HHHHHHHHHh--CCCEEEEec
Q 005762 326 SNVLLMGPTGSGKT-LLAKTLARHV--NVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT-~LAralA~~l--~~~fv~id~ 358 (678)
.-.+++||.|+||| .|.+++.+.. +...+.+..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 45899999999999 8888888765 556666553
No 256
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.39 E-value=0.095 Score=54.36 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=23.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..|.|.|++|+||||+|+.|++.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5689999999999999999999885
No 257
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.23 E-value=0.043 Score=54.71 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC--CCEE
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN--VPFV 354 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~--~~fv 354 (678)
..-|+|.|++|+||||+++.|++.++ ..++
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 35689999999999999999999986 3444
No 258
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.15 E-value=0.39 Score=54.51 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=29.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh-------CCCEEEEeccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV-------NVPFVIADATT 360 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l-------~~~fv~id~s~ 360 (678)
-.|+|+.|.||+|||++++.|...+ .+.|+.+|...
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 3799999999999999999866543 24688899873
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.13 E-value=0.048 Score=51.52 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+.|.||.|+|||||.++|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999988
No 260
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.09 E-value=0.036 Score=57.43 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=26.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEeccccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLT 362 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~l~ 362 (678)
..|.|.||+|+||||+|+.|++.++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4689999999999999999999875 445667766654
No 261
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.09 E-value=0.048 Score=54.46 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
..+.|.||+|+||||+++.|+..++..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 468899999999999999999988643
No 262
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.03 E-value=0.034 Score=54.80 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHH-HHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLA-RHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA-~~l~ 350 (678)
...+.|+||+|+|||||++.|+ ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3568999999999999999999 8763
No 263
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.98 E-value=0.061 Score=50.61 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.5
Q ss_pred ccccCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 321 v~~~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
+.+.+.-.+|+||+|+|||+|+++|+-.++
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 344456789999999999999999999885
No 264
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.89 E-value=0.051 Score=55.51 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...++|.||+|+||||+.++|+..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 4579999999999999999999876
No 265
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.82 E-value=0.18 Score=56.48 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
+..|+|+|++|+||||++..||..+ +.....+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4689999999999999999999776 566666666
No 266
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.80 E-value=0.057 Score=53.66 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46789999999999999999999874
No 267
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.65 E-value=0.06 Score=50.87 Aligned_cols=20 Identities=50% Similarity=0.733 Sum_probs=18.0
Q ss_pred CcEEEEcCCCcHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTL 345 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAral 345 (678)
.-+.|+||+|+||||+++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999964
No 268
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.65 E-value=0.064 Score=60.99 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=31.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC----CCEEEEecccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTL 361 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~----~~fv~id~s~l 361 (678)
..|+|+|.+|+||||+|+.|++.++ .+++.+|...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 5699999999999999999999986 78888876543
No 269
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.63 E-value=0.15 Score=56.12 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
....++.|+||||||++...+++
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 45689999999999999987765
No 270
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.62 E-value=0.1 Score=58.36 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...++|.||+|+||||+++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4578999999999999999999887
No 271
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.51 E-value=0.066 Score=56.16 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|+||+|+|||||+++|++.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4678899999999999999999998
No 272
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.43 E-value=0.17 Score=57.91 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=22.3
Q ss_pred CcEEEEcCCCcHHHHH-HHHHHHHh--CCCEEEEecc
Q 005762 326 SNVLLMGPTGSGKTLL-AKTLARHV--NVPFVIADAT 359 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~L-AralA~~l--~~~fv~id~s 359 (678)
.-.|+.||||||||++ +..|+..+ +.+++.+..+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3579999999999975 45555544 4444444443
No 273
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.42 E-value=0.11 Score=54.06 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=29.3
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEeccc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATT 360 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s~ 360 (678)
.+..++|.||+|+||||++..||..+ +..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 45789999999999999999999776 34566666543
No 274
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.28 E-value=0.073 Score=55.64 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.6
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
....+.|.||+|+||||+++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35689999999999999999999887
No 275
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.23 E-value=0.054 Score=56.36 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=23.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+.|.||+|+|||||++.|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5689999999999999999999875
No 276
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.10 E-value=0.31 Score=53.40 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEeccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATT 360 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s~ 360 (678)
+..++|.|++|+||||++-.||..+ +.....+|+..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4689999999999999999999766 56777777764
No 277
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.04 E-value=0.28 Score=59.21 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=34.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
++|.+..++.|...+... . .....+.|+|+.|+|||+||+.+++.
T Consensus 126 ~vgR~~~~~~l~~~l~~~-------~----------------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL-------N----------------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT-------T----------------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eccHHHHHHHHHHHHhhc-------c----------------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 699999999888777310 0 01256899999999999999988754
No 278
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.03 E-value=0.073 Score=55.85 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45789999999999999999999883
No 279
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.99 E-value=0.24 Score=54.32 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
.+..++|.|++|+||||++..||..+ +..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 45678899999999999999999887 4566666653
No 280
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.98 E-value=0.081 Score=53.81 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.9
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
....++|+||+|+|||||+..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999755
No 281
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.92 E-value=0.072 Score=60.34 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC----CCEEEEecccc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTL 361 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~----~~fv~id~s~l 361 (678)
...+.|+|++|+|||||+++||+.++ ..+..+|...+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 35799999999999999999999984 34545666544
No 282
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.92 E-value=0.082 Score=54.10 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...++|.||||+|||+|++.||..+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999876
No 283
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.77 E-value=0.19 Score=49.04 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=26.7
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s 359 (678)
+...++|.|+||+|||++|..+|... +.+.+.++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 45689999999999999998776432 5566655543
No 284
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.66 E-value=0.14 Score=53.94 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
+..+.|.||+|+||||+++.|+..+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34789999999999999999999985
No 285
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.58 E-value=0.078 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+.|.|++|+|||||++.|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3589999999999999999999883
No 286
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.55 E-value=0.056 Score=60.69 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=24.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
.+|+|.|.+|+||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999974
No 287
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.50 E-value=0.09 Score=56.43 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=22.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|.||+|+||||++++|+..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 579999999999999999999877
No 288
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.50 E-value=0.24 Score=54.08 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=27.5
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEec
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADA 358 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~ 358 (678)
+..-++|.|+||+|||++|..+|... +.+.+.++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34678999999999999999988654 456666665
No 289
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.37 E-value=0.11 Score=55.22 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
..+.|+||+|+|||||+++|+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56899999999999999999999854
No 290
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.33 E-value=0.044 Score=55.28 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=23.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..|+|.|++|+||||+++.|++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999999983
No 291
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.07 E-value=0.1 Score=51.73 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=23.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..|+|.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999984
No 292
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.06 E-value=0.15 Score=57.06 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=33.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHH
Q 005762 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 275 VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~ 347 (678)
+||.+..++.|...+... . .....++|+|++|+|||+||+.+++
T Consensus 126 ~vGR~~~l~~L~~~L~~~-------~----------------------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKL-------K----------------------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCHHHHHHHHHHHTTS-------T----------------------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHHhcc-------c----------------------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 699999999887776310 0 0125699999999999999998864
No 293
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.06 E-value=0.13 Score=50.02 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=27.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCEEEEeccc
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~~~fv~id~s~ 360 (678)
+|++|++|+|||++|+.++.. +.+.+.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999977 77777776654
No 294
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.00 E-value=0.076 Score=53.24 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45788999999999999999998774
No 295
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.94 E-value=0.074 Score=52.89 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35688999999999999999998763
No 296
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.94 E-value=0.1 Score=51.86 Aligned_cols=32 Identities=34% Similarity=0.375 Sum_probs=28.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id~ 358 (678)
..|-|+|..||||||+++.+++ ++.+++..|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 5689999999999999999998 8888876554
No 297
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.84 E-value=0.43 Score=47.01 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|..+|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 367999999999999999998853
No 298
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.77 E-value=0.12 Score=51.02 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
.-|+|.|++|+||||+++.|++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999883
No 299
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.75 E-value=0.34 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...++|+||+|+|||+|++.|++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3679999999999999999999876
No 300
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.73 E-value=0.096 Score=55.89 Aligned_cols=33 Identities=30% Similarity=0.523 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC--CCEEEEe
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN--VPFVIAD 357 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~--~~fv~id 357 (678)
...++|.||+|+||||++++|+..+. ...+.++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 36899999999999999999999874 2344444
No 301
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.68 E-value=0.096 Score=52.78 Aligned_cols=25 Identities=36% Similarity=0.695 Sum_probs=22.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+.|.||+|+|||||.++|+..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6788999999999999999998763
No 302
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.68 E-value=0.083 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999999876
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.66 E-value=0.091 Score=51.80 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=21.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..+.|.||+|+|||||.++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999986
No 304
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.61 E-value=0.12 Score=52.96 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=22.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
-++.|.||+|+|||||.++|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999887
No 305
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.46 E-value=0.23 Score=53.06 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=29.6
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
...|+++.||+|+|||++++.++..+ +..++.+|..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45899999999999999999988655 5677777753
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.44 E-value=0.14 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+.|.|++|+||||++..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999876
No 307
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=90.38 E-value=0.37 Score=49.55 Aligned_cols=22 Identities=32% Similarity=0.234 Sum_probs=18.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
.++++.+|+|+|||+++-..+-
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 5799999999999998765443
No 308
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.37 E-value=0.13 Score=48.88 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999765
No 309
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.32 E-value=0.23 Score=46.49 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...|+|.|++|+|||+|...+....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999988654
No 310
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.31 E-value=0.14 Score=48.80 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|.|++|+|||+|.+.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999764
No 311
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.28 E-value=0.92 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
.++++.||+|+|||+++..+..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999997666643
No 312
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.27 E-value=0.095 Score=53.44 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35688999999999999999998774
No 313
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.26 E-value=0.1 Score=51.82 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45788999999999999999998763
No 314
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.25 E-value=0.097 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35688999999999999999998763
No 315
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.16 E-value=0.15 Score=55.83 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=23.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..++|.||+|+||||+.++|+..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5689999999999999999999884
No 316
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.12 E-value=0.12 Score=51.84 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..-|+|.|++|+||||+++.|++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999888
No 317
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.06 E-value=0.16 Score=48.78 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|.|++|+||||+++.|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999999875
No 318
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.01 E-value=0.1 Score=52.34 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35788999999999999999998763
No 319
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.01 E-value=0.11 Score=58.14 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC--CCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~--~~fv~id~ 358 (678)
.+++|.||+|+||||++++|+..+. ...+.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 5799999999999999999999884 34555544
No 320
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.00 E-value=0.16 Score=45.79 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.0
Q ss_pred cEEEEcCCCcHHHHHHHHHHHH
Q 005762 327 NVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~ 348 (678)
.+++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998864
No 321
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.00 E-value=0.1 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999999876
No 322
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.98 E-value=0.17 Score=48.66 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...++|+|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 323
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.98 E-value=0.11 Score=51.94 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45788999999999999999998763
No 324
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.96 E-value=0.23 Score=49.33 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
.-|+|.|++|+||||+++.|++.+..+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 569999999999999999999999764
No 325
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.87 E-value=0.15 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998854
No 326
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.84 E-value=0.1 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999876
No 327
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.79 E-value=0.11 Score=53.16 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 35688999999999999999998763
No 328
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.77 E-value=0.11 Score=53.51 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35689999999999999999998773
No 329
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.73 E-value=0.11 Score=53.22 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35688999999999999999998763
No 330
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.73 E-value=0.16 Score=51.22 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...+.|.||+|+|||||.++|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999986
No 331
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.71 E-value=0.17 Score=45.78 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..++|.|++|+|||+|...+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998864
No 332
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.71 E-value=0.11 Score=52.60 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35688999999999999999998773
No 333
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.61 E-value=0.16 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999988754
No 334
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.60 E-value=0.12 Score=55.52 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++||....
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 35688999999999999999998773
No 335
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.60 E-value=0.17 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+++.|++|+|||+|+..+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999998643
No 336
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.59 E-value=0.12 Score=52.70 Aligned_cols=25 Identities=44% Similarity=0.594 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4578899999999999999999876
No 337
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.51 E-value=0.12 Score=53.35 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35688999999999999999998773
No 338
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.50 E-value=0.17 Score=50.98 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=22.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.-|+|.|++|+||||+++.|++.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999999888
No 339
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.41 E-value=0.18 Score=51.58 Aligned_cols=25 Identities=44% Similarity=0.608 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+...
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999874
No 340
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.41 E-value=0.27 Score=56.25 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=19.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+++.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999876665443
No 341
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.31 E-value=0.13 Score=52.47 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35788999999999999999998763
No 342
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.29 E-value=0.13 Score=52.58 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35688999999999999999998763
No 343
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.26 E-value=0.15 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=22.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+.|.||+|+|||||.++||....
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 5688999999999999999998873
No 344
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.25 E-value=0.18 Score=48.96 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=26.3
Q ss_pred ccccCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEE
Q 005762 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (678)
Q Consensus 321 v~~~~~~iLL~GPpGtGKT~LAralA~~l~~~fv~ 355 (678)
+......+||.|++|+|||++|..+.+. +..++.
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 3344678999999999999999998874 444443
No 345
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.24 E-value=0.32 Score=50.37 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=28.7
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
....+.|+|++|+||||++..||..+ +..+..+++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45678899999999999999999877 4566656553
No 346
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.22 E-value=0.17 Score=45.84 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..|+|.|++|+|||+|...+...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999887543
No 347
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.17 E-value=0.13 Score=52.18 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35688999999999999999998874
No 348
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.05 E-value=0.24 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...|+|.|++|+|||+|...+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999875
No 349
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.03 E-value=0.16 Score=54.47 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++||....
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35688999999999999999998873
No 350
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.98 E-value=0.17 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||+++|+..+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45788999999999999999998773
No 351
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.96 E-value=0.14 Score=55.28 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++||....
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 35688999999999999999998873
No 352
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.89 E-value=0.2 Score=46.11 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..++|.|++|+|||+|.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999975
No 353
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.86 E-value=0.63 Score=49.22 Aligned_cols=33 Identities=36% Similarity=0.461 Sum_probs=25.1
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecc
Q 005762 327 NVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~s 359 (678)
++++..|+|+|||..+-.++... +.+.+.+-.+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999988776554 4555555544
No 354
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.86 E-value=0.21 Score=45.22 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|.|++|+|||+|.+.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999988654
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.83 E-value=0.16 Score=54.45 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++||....
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 35678999999999999999998873
No 356
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.81 E-value=0.15 Score=54.93 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++||....
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 35678999999999999999998773
No 357
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.78 E-value=0.3 Score=51.78 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=26.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
..|.|+|+||+||||++..|+..+ +..+..+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 579999999999999999999876 455555544
No 358
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.77 E-value=0.17 Score=54.31 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++||....
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 35688999999999999999998773
No 359
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.74 E-value=0.17 Score=47.47 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=19.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..++|.|++|+|||+|.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999886
No 360
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.65 E-value=0.21 Score=45.60 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..|+|.|++|+|||+|.+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5799999999999999998864
No 361
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.64 E-value=0.17 Score=54.44 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++||....
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 35688999999999999999998873
No 362
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.62 E-value=0.22 Score=49.33 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=22.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
.-|+|.|++|+||||+++.|++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999988
No 363
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.57 E-value=0.23 Score=49.65 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=23.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
.-|+|.|++|+||||+++.|++.+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 56899999999999999999988743
No 364
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.55 E-value=0.21 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..++|.|++|+|||+|.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998863
No 365
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.52 E-value=0.22 Score=45.09 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998753
No 366
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.49 E-value=0.38 Score=47.66 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh--CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV--NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l--~~~fv~id~s 359 (678)
...+++.|.+|+||||++..+|..+ +.....+|+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4678999999999999999999776 5566666643
No 367
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.48 E-value=0.16 Score=47.66 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=21.5
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
....|+|.|++|+|||+|...+....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999887543
No 368
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.48 E-value=0.23 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 369
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.46 E-value=0.15 Score=54.44 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++||...
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3568899999999999999999877
No 370
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.43 E-value=0.23 Score=45.04 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|++.|++|+|||+|...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998854
No 371
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.37 E-value=0.24 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999988754
No 372
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.36 E-value=0.32 Score=54.93 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=28.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC---CCEEEEeccc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATT 360 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~---~~fv~id~s~ 360 (678)
..|+|+|++|+||||+|+.|++.++ .++..+|...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 5689999999999999999999873 4666666543
No 373
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.32 E-value=1.3 Score=51.03 Aligned_cols=20 Identities=55% Similarity=0.723 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCcHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKT 344 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAra 344 (678)
..++++.+|||+|||+++..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHH
Confidence 47899999999999999844
No 374
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.32 E-value=0.23 Score=49.03 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...+.|.|+.|+||||+++.|+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999999987
No 375
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.31 E-value=0.24 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999863
No 376
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.30 E-value=0.15 Score=52.19 Aligned_cols=25 Identities=36% Similarity=0.735 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999876
No 377
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.27 E-value=0.25 Score=44.67 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998853
No 378
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.25 E-value=0.23 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..++|.|++|+|||+|.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999863
No 379
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.21 E-value=0.23 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=22.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+.|.||+|+|||||+|+|+..+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 579999999999999999999876
No 380
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.20 E-value=0.39 Score=50.03 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=26.7
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
+..-++|.|+||+|||++|..+|..+ +.+.+.++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 34679999999999999999998654 345555554
No 381
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.10 E-value=0.24 Score=45.00 Aligned_cols=20 Identities=45% Similarity=0.768 Sum_probs=18.7
Q ss_pred cEEEEcCCCcHHHHHHHHHH
Q 005762 327 NVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA 346 (678)
.|+|.|++|+|||+|...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 382
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.08 E-value=0.26 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHH
Q 005762 327 NVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~~ 348 (678)
.++|.|++|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998754
No 383
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.07 E-value=0.17 Score=53.05 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|+||+|+|||||+++|+..+.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 46789999999999999999998773
No 384
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.06 E-value=0.24 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..|+|.|++|+|||+|...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999875
No 385
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.88 E-value=0.18 Score=54.71 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+..+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4678999999999999999999865
No 386
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=87.86 E-value=0.26 Score=46.60 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...++|.|++|+|||+|.+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999986
No 387
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.77 E-value=0.31 Score=45.21 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=23.7
Q ss_pred cccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 322 ~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.-.+|+||.|+|||++..+|.-.+
T Consensus 20 ~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 20 EFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445678999999999999999998766
No 388
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.76 E-value=0.26 Score=44.59 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=19.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA 346 (678)
-.++|.|++|+|||+|.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 469999999999999999885
No 389
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.76 E-value=0.28 Score=44.54 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...|+|.|++|+|||+|...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 390
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.71 E-value=0.28 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..|+|.|++|+|||+|...+...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999988643
No 391
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.70 E-value=0.28 Score=45.84 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...|+|.|++|+|||+|+..+....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998643
No 392
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.67 E-value=0.28 Score=45.17 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57999999999999999998854
No 393
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.64 E-value=0.27 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998865
No 394
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.63 E-value=0.27 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 395
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.54 E-value=0.29 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..|+|.|++|+|||+|...+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 579999999999999999998543
No 396
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.52 E-value=0.29 Score=45.56 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..|+|.|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 579999999999999999888654
No 397
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.52 E-value=0.97 Score=47.02 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=17.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA 346 (678)
.++++.+|+|+|||.++-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 679999999999998765444
No 398
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.45 E-value=0.28 Score=47.20 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=22.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..++|.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998763
No 399
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.41 E-value=0.42 Score=56.42 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=19.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+++.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999876665543
No 400
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.38 E-value=0.19 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+..+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3568899999999999999999876
No 401
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.36 E-value=0.26 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..|+|.|++|+|||+|...+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998863
No 402
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.31 E-value=1 Score=52.97 Aligned_cols=34 Identities=32% Similarity=0.325 Sum_probs=23.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
.++|+.||+|+|||.++-..+-.. +...+.+-.+
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 589999999999999876544322 4445544443
No 403
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.30 E-value=0.26 Score=45.17 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..++|.|++|+|||+|...+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 5799999999999999999874
No 404
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.28 E-value=0.24 Score=46.12 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988753
No 405
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.26 E-value=1.4 Score=54.96 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
+...+.|+||+|+|||||+++|.+++..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 3467889999999999999999998843
No 406
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.26 E-value=0.3 Score=45.78 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 407
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.16 E-value=0.3 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..++|.|++|+|||+|.+.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 408
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=87.16 E-value=1.8 Score=52.97 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=17.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA 346 (678)
.++|+.+|+|+|||+++...+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 679999999999999875544
No 409
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.15 E-value=0.5 Score=45.91 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=24.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHHh---CCCEEEE
Q 005762 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l---~~~fv~i 356 (678)
|.|.|+-|+||||.++.|++.+ +.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 6899999999999999999988 5565544
No 410
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.10 E-value=0.31 Score=45.27 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998865
No 411
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.09 E-value=0.3 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998754
No 412
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.05 E-value=0.32 Score=45.01 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999998854
No 413
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.04 E-value=0.51 Score=51.70 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=27.7
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEec
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADA 358 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l----~~~fv~id~ 358 (678)
+..-++|.|+||+|||+++..+|..+ +.+.+.++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 45679999999999999999998755 446666654
No 414
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.04 E-value=0.44 Score=50.69 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=24.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
..+.|.||+|+|||||.+.|++.+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 568999999999999999999998643
No 415
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=87.00 E-value=0.65 Score=55.62 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...++|+||.|+||||+.+.++..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 457999999999999999999854
No 416
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.96 E-value=0.32 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998754
No 417
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.94 E-value=0.33 Score=44.61 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999998754
No 418
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=86.80 E-value=0.34 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.9
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHH
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~ 347 (678)
....|+|.|++|+|||+|...+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999998864
No 419
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.77 E-value=0.34 Score=44.67 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999988753
No 420
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.74 E-value=0.33 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...++|.|++|+|||+|...+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998874
No 421
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.70 E-value=0.3 Score=45.46 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..++|.|++|+|||+|...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 422
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.68 E-value=0.3 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.2
Q ss_pred cEEEEcCCCcHHHHHHHHHHH
Q 005762 327 NVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 327 ~iLL~GPpGtGKT~LAralA~ 347 (678)
.|+|.|++|+|||+|...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998875
No 423
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.64 E-value=0.46 Score=52.18 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~ 352 (678)
..+.|.||+|+|||||.+.|++.....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 568999999999999999999998543
No 424
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.60 E-value=0.48 Score=51.17 Aligned_cols=35 Identities=34% Similarity=0.515 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
..|++++|+||+|||++++.+...+ +..++.+|..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5899999999999999987666443 6677777764
No 425
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.57 E-value=0.39 Score=44.14 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...++|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999988753
No 426
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=86.54 E-value=0.99 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+.|.|+||+|||||...|...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 569999999999999999999865
No 427
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=86.48 E-value=0.63 Score=55.87 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...++|+||.|+||||+.|.++-.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999643
No 428
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.47 E-value=0.35 Score=46.68 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..++|.|.+|+|||+|+..++..+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999876
No 429
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.47 E-value=0.35 Score=45.13 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..|+|.|++|+|||+|...+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999988643
No 430
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.39 E-value=0.35 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||||+|||||.++|+..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999999876
No 431
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.30 E-value=0.36 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998754
No 432
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.28 E-value=0.37 Score=45.10 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998754
No 433
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=86.24 E-value=0.31 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...++|.|++|+|||+|.+.+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999998863
No 434
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=86.20 E-value=0.47 Score=55.73 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...++|+||.|+||||+.|+++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5679999999999999999999754
No 435
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=86.20 E-value=0.46 Score=57.79 Aligned_cols=45 Identities=29% Similarity=0.340 Sum_probs=34.5
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhhhccccccccccCCcEEEEcCCCcHHHHHHHHHHH
Q 005762 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 273 ~~VvGQe~ak~~L~~av~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~iLL~GPpGtGKT~LAralA~ 347 (678)
+..||.+..++.|...+... . ....+.++|+.|+|||+||+.+++
T Consensus 128 k~~VGRe~eLeeL~elL~~~--------------------------d----~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL--------------------------R----PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC--------------------------C----SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc--------------------------C----CCeEEEEEcCCCccHHHHHHHHHH
Confidence 33589999888887776410 0 125799999999999999999885
No 436
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.18 E-value=0.35 Score=44.94 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999988754
No 437
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.18 E-value=0.37 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999998864
No 438
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.13 E-value=0.38 Score=44.79 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999998764
No 439
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.13 E-value=0.39 Score=47.09 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhC
Q 005762 328 VLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 328 iLL~GPpGtGKT~LAralA~~l~ 350 (678)
|.|.|+.|+||||+++.|++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999883
No 440
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=86.06 E-value=0.32 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998864
No 441
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=86.01 E-value=0.37 Score=44.44 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..|+|.|++|+|||+|...+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5799999999999999999884
No 442
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.97 E-value=0.38 Score=53.71 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...++|.||+|+|||+|++.++...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999766
No 443
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.86 E-value=0.39 Score=45.35 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.1
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..|+|.|++|+|||+|...+...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999987643
No 444
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.80 E-value=0.4 Score=44.97 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999998853
No 445
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.79 E-value=0.38 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
-.|+|.|++|+|||+|...+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 579999999999999999988654
No 446
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=85.78 E-value=0.21 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...++|.|++|+|||||.++|+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999988643
No 447
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=85.77 E-value=0.47 Score=56.02 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...++|+||.|+||||+.|+++...
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4579999999999999999999764
No 448
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=85.76 E-value=0.4 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 449
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.76 E-value=0.38 Score=45.27 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998754
No 450
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=85.73 E-value=0.4 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 57999999999999999888754
No 451
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=85.73 E-value=0.4 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 452
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=85.70 E-value=0.68 Score=45.70 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=29.8
Q ss_pred ccCCcEEEEcCCCcHHHHHHHHHHHHhCC-CEEEEeccc
Q 005762 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNV-PFVIADATT 360 (678)
Q Consensus 323 ~~~~~iLL~GPpGtGKT~LAralA~~l~~-~fv~id~s~ 360 (678)
.++..|+|+|.||+||+++|+.+.+.++. .+..+.+++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 35678999999999999999999987753 244556654
No 453
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.65 E-value=0.41 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 368999999999999999998753
No 454
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=85.62 E-value=0.41 Score=45.08 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999877654
No 455
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=85.61 E-value=0.41 Score=44.94 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..|+|.|++|+|||+|...+...-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999988643
No 456
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.61 E-value=0.28 Score=45.33 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCcHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA 346 (678)
...|+|.|++|+|||+|...+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999998775
No 457
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.58 E-value=0.37 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 458
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=85.48 E-value=0.57 Score=49.74 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEec
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l---~~~fv~id~ 358 (678)
+..-++|.|+||+|||++|..+|..+ +.+.+.++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34679999999999999999998765 556555554
No 459
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=85.40 E-value=0.41 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 460
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=85.39 E-value=0.41 Score=45.42 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...|+|.|++|+|||+|...+...-
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3679999999999999999988643
No 461
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.37 E-value=0.33 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
...+.|.||+|+|||||.++|+..+.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 45688999999999999999998773
No 462
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.35 E-value=0.41 Score=44.78 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..|+|.|++|+|||+|...+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 5799999999999999999886
No 463
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.32 E-value=0.41 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999988753
No 464
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.29 E-value=0.4 Score=44.54 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...+++.|++|+|||+|...+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999998874
No 465
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=85.08 E-value=0.46 Score=45.34 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=21.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..|+|.|++|+|||+|...+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999988643
No 466
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.08 E-value=0.49 Score=46.02 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=25.6
Q ss_pred ccccCCcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 321 v~~~~~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
+...+.-.+|+||.|+|||++..+|.-.+..
T Consensus 19 i~f~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEeCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445567899999999999999999887744
No 467
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=85.02 E-value=0.38 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|+..+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 57999999999999999998753
No 468
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.84 E-value=0.47 Score=45.01 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998753
No 469
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.77 E-value=0.42 Score=44.71 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...++|.|++|+|||+|.+.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999988753
No 470
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.75 E-value=0.45 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|+..+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 471
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=84.68 E-value=1.9 Score=52.83 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=17.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA 346 (678)
.++|++||+|+|||.+|-..+
T Consensus 625 ~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 625 MDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CEEEEECCCCTTTHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 489999999999999876444
No 472
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.58 E-value=0.46 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|.+.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999988754
No 473
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.37 E-value=0.47 Score=44.26 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...|+|.|++|+|||+|...+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999998874
No 474
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.36 E-value=0.49 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999865
No 475
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=84.36 E-value=0.32 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=10.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..|+|.|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999988864
No 476
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=84.15 E-value=0.42 Score=44.74 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...|+|.|++|+|||+|...+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999988763
No 477
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=84.00 E-value=0.44 Score=45.91 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...|+|.|++|+|||+|...+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 36899999999999999998874
No 478
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=83.98 E-value=0.5 Score=44.72 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCcHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA 346 (678)
...|+|.|++|+|||+|...+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999875
No 479
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=83.94 E-value=0.54 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
...+.|.||+|+|||||.++|+ .+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3578999999999999999999 55
No 480
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.94 E-value=0.98 Score=56.20 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=28.0
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhCC--CEEEEeccc
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATT 360 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~~--~fv~id~s~ 360 (678)
+...+-|+|++|+|||||+++|.+.+.. --+.+|..+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSE 1142 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEE
Confidence 3456789999999999999999998742 235555544
No 481
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=83.92 E-value=0.49 Score=44.61 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..|+|.|++|+|||+|...+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998863
No 482
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.91 E-value=0.54 Score=50.09 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=23.9
Q ss_pred ccccCCcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 321 VELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 321 v~~~~~~iLL~GPpGtGKT~LAralA~~l 349 (678)
+.....-.+|+||+|+|||||..+|+-.+
T Consensus 19 i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 19 IEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34445678899999999999999998665
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=83.87 E-value=0.52 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...|+|.|++|+|||+|...+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999988874
No 484
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=83.86 E-value=0.43 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.8
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
-.|+|.||+|+|||||.+.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46799999999999999998753
No 485
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.81 E-value=0.52 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 458999999999999999998863
No 486
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=83.78 E-value=0.56 Score=55.40 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~ 347 (678)
...+|+.||||||||+++..+..
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999988655543
No 487
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=83.68 E-value=0.36 Score=51.58 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=25.9
Q ss_pred ccccCCcEEEEcCCCcHHHHHHHHHHHHhCC
Q 005762 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (678)
Q Consensus 321 v~~~~~~iLL~GPpGtGKT~LAralA~~l~~ 351 (678)
+.+.+..++|+||+|+|||+|.++|+-.++.
T Consensus 56 l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 56 LELGGGFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EECCSSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444568999999999999999999988854
No 488
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=83.67 E-value=0.51 Score=44.86 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..|+|.|++|+|||+|...+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5799999999999999998863
No 489
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=83.64 E-value=0.57 Score=44.43 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|+||+|||+|...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998853
No 490
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=83.63 E-value=0.54 Score=44.63 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHHH
Q 005762 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 325 ~~~iLL~GPpGtGKT~LAralA~~ 348 (678)
...|+|.|++|+|||+|...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999998863
No 491
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=83.56 E-value=1.1 Score=51.85 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCcHHHHHHH
Q 005762 324 EKSNVLLMGPTGSGKTLLAK 343 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAr 343 (678)
....+|+.||+|+|||+.|-
T Consensus 154 ~rk~vlv~apTGSGKT~~al 173 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAI 173 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45689999999999999543
No 492
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=83.50 E-value=0.54 Score=44.98 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
..|+|.|++|+|||+|...+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 5799999999999999998874
No 493
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=83.47 E-value=0.89 Score=49.57 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.7
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHh
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l 349 (678)
..+.|.||+|+|||||.++|+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 578999999999999999999854
No 494
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=83.44 E-value=0.45 Score=45.32 Aligned_cols=21 Identities=43% Similarity=0.688 Sum_probs=19.3
Q ss_pred CcEEEEcCCCcHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLA 346 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA 346 (678)
..|+|.|++|+|||+|...+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
No 495
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=83.43 E-value=0.3 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
..+.|+||+|+|||||.++|+..+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 3467899999999999999999883
No 496
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.39 E-value=2.4 Score=47.25 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=21.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEe
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~l~~~fv~id 357 (678)
.++|+..|+|+|||+.+...+-......+.+.
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~ 72 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS 72 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEEC
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCEEEEC
Confidence 57999999999999876655544433334443
No 497
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=83.35 E-value=0.56 Score=44.66 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.5
Q ss_pred CcEEEEcCCCcHHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLARH 348 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~~ 348 (678)
..|+|.|++|+|||+|...+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999988753
No 498
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=83.29 E-value=0.57 Score=50.13 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHhC
Q 005762 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (678)
Q Consensus 324 ~~~~iLL~GPpGtGKT~LAralA~~l~ 350 (678)
....+.|.||+|+|||||.++|+....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 346799999999999999999997653
No 499
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.27 E-value=1.6 Score=49.52 Aligned_cols=22 Identities=41% Similarity=0.535 Sum_probs=18.0
Q ss_pred CcEEEEcCCCcHHHHHHHHHHH
Q 005762 326 SNVLLMGPTGSGKTLLAKTLAR 347 (678)
Q Consensus 326 ~~iLL~GPpGtGKT~LAralA~ 347 (678)
.++|+..|+|+|||+.....+-
T Consensus 60 ~d~lv~~pTGsGKTl~~~lpal 81 (591)
T 2v1x_A 60 KEVFLVMPTGGGKSLCYQLPAL 81 (591)
T ss_dssp CCEEEECCTTSCTTHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHH
Confidence 5799999999999987665553
No 500
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=83.25 E-value=2.4 Score=43.68 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=27.6
Q ss_pred CcEEEEcC-CCcHHHHHHHHHHHHh---CCCEEEEecc
Q 005762 326 SNVLLMGP-TGSGKTLLAKTLARHV---NVPFVIADAT 359 (678)
Q Consensus 326 ~~iLL~GP-pGtGKT~LAralA~~l---~~~fv~id~s 359 (678)
..|+++++ +|+|||++|-.||..+ +.+.+.+|+.
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56888886 8999999999999776 6677777774
Done!