Query 005763
Match_columns 678
No_of_seqs 292 out of 858
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 06:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 100.0 3.7E-90 1.3E-94 796.9 51.7 568 57-677 1-651 (677)
2 2jxc_B Stonin-2, stoned B; end 75.1 4.3 0.00015 26.9 4.1 37 3-54 6-42 (45)
3 3t98_B Nucleoporin NUP58/NUP45 42.7 1.2E+02 0.0042 24.4 8.2 58 133-190 6-67 (93)
4 2j6y_A Phosphoserine phosphata 15.0 4.9E+02 0.017 21.6 7.0 46 536-585 38-84 (111)
5 1w53_A Phosphoserine phosphata 14.7 3E+02 0.01 21.6 5.4 48 531-582 32-81 (84)
6 3obv_E Protein diaphanous homo 12.9 6.2E+02 0.021 26.6 9.2 57 135-191 249-305 (457)
7 2wx4_A DCP1, decapping protein 12.8 1.4E+02 0.0049 20.5 2.6 19 541-559 25-43 (46)
8 4e17_B Catenin alpha-1; four h 12.8 1.6E+02 0.0056 19.6 2.8 16 137-152 21-36 (40)
9 2wx3_A MRNA-decapping enzyme 1 11.5 2E+02 0.007 20.2 3.1 18 541-558 27-44 (51)
10 4a64_A Cullin-4B, CUL4B, CUL-4 10.0 9.7E+02 0.033 23.8 9.3 74 498-576 269-346 (354)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-90 Score=796.87 Aligned_cols=568 Identities=22% Similarity=0.361 Sum_probs=468.5
Q ss_pred HHHHHHHHhcCCCCCceeeccccCcCCCCCCCCCccceEecC---CCCHHHHHHHHHHHHHHhHHHHHHHHHhhhcC---
Q 005763 57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQ--- 130 (678)
Q Consensus 57 lv~dLL~~l~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~---~~~~sl~~l~~~il~lg~~~~~l~~Fv~~~~~--- 130 (678)
|++|||++|+|++|.||++.+ ..+|+|++ .+++|+++++++++++|.+|+.|++|++....
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~ 67 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ 67 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 589999999999999999865 14688988 56899999999999999999999999996432
Q ss_pred -----C-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchHHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 005763 131 -----F-------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 197 (678)
Q Consensus 131 -----~-------~~g~v~~Ala~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~iv~~~~~~~ 197 (678)
+ ..|+|++|||++|+++|++|+..|+++|+++.. +.+||+.++..++|+...|+.|++|+.++..+.
T Consensus 68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~ 147 (677)
T 3rip_A 68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK 147 (677)
T ss_dssp -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 169999999999999999999999999999854 679999999999999999999999999987678
Q ss_pred CchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEeeCCCccccccc--------
Q 005763 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLT-------- 269 (678)
Q Consensus 198 ~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~ll~~~~~p~~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~l~-------- 269 (678)
++||++|+.||+++ .+||+.+++++.+|+..|++||+++|..||.+|++.|||+||||++++...++...
T Consensus 148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~ 225 (677)
T 3rip_A 148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225 (677)
T ss_dssp CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence 99999999999997 59999999999999999999999999999999999999999999998654321000
Q ss_pred -------------------c-cchhhhhcccccc-ccCCCcchHH-HHHHHHHhhhHHHHHHHhCCCCC-----CCcccc
Q 005763 270 -------------------Q-DYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQ-----VPTSEN 322 (678)
Q Consensus 270 -------------------~-d~~~~~W~~~y~l-~~~vP~Fl~~-~a~~Il~~GK~l~~lr~~~~~~~-----~p~~e~ 322 (678)
. +....+|+.+|+| .+++|+|+++ +|+|||.|||++|+||+|+.... ++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~ 305 (677)
T 3rip_A 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED 305 (677)
T ss_dssp ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence 0 0112479999999 6889999987 99999999999999999765421 010000
Q ss_pred ------ccccccC--CccchHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHhcccc
Q 005763 323 ------SKLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD 394 (678)
Q Consensus 323 ------~~~~~f~--~~~~~~~~I~~~~~~~s~~ll~ll~~~~~L~~hL~~lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~ 394 (678)
..+...+ +...|...|+++|..+|+.|+++|+++++|.+||+++|+||||++|||+..|++.++++|.+++.
T Consensus 306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~ 385 (677)
T 3rip_A 306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT 385 (677)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence 0011110 11467889999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhhhhchHHHHHHHhcccccccccC-------CC--C------------CCcCCCCCcccceeEEEEeecCCcccee
Q 005763 395 EITVEKLQERSSLLKRMATLKGVEIKTS-------SD--S------------VDLEQPVSITGLETFSLSYKVQWPLSIV 453 (678)
Q Consensus 395 ~i~~~~l~~~~~L~~~lss~~~~d~~~~-------~~--~------------~~~~~~~~~~~~d~l~L~Y~v~wPL~lI 453 (678)
.++..+|+..+..+.+.+..++.+.... .+ . .....+.+..|||+|.|+|+|||||++|
T Consensus 386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~~PL~li 465 (677)
T 3rip_A 386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHIL 465 (677)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC-----------------------CCTTTTEEEEECCCTTGGGT
T ss_pred ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccccccccccccccccccccCCccchheEEEEEeCCChHHHh
Confidence 8888888877766665443332211100 00 0 0011234578999999999999999999
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHH
Q 005763 454 ISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMH 533 (678)
Q Consensus 454 it~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~f~ 533 (678)
||+++|.+|++||+|||++||+++.|+++|+.++..+........+.+ +.+|++|+|||+++++|++++||+++|.+|+
T Consensus 466 it~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~ 544 (677)
T 3rip_A 466 FTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLL 544 (677)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987755433222233344 8999999999999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCChhHHHH
Q 005763 534 NRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKR 613 (678)
Q Consensus 534 ~~l~~a~~~d~l~~~H~~fL~~i~~~cfL~~~~l~~~l~~ll~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (678)
+++++++|+|+|+++|++||++|+++|||+.+++.++|.+|+++|++||..+++.. +..
T Consensus 545 ~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~~-------~~~-------------- 603 (677)
T 3rip_A 545 HQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNL-------GPL-------------- 603 (677)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC---------C--------------
T ss_pred HhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhhc-------ccc--------------
Confidence 99999999999999999999999999999999999999999999999999886321 000
Q ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHhccCCC
Q 005763 614 LKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFD 677 (678)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~l~~~~~~~~~~~~L~~lllrld~n 677 (678)
.+...+++++++++|++++..|+++|++++ +.++.++|++||+|||||
T Consensus 604 ---------------~~~~~~~~~~l~~~F~~~~~~L~~~l~~l~-~~~~~~~l~~Ll~rLd~N 651 (677)
T 3rip_A 604 ---------------DERGAAQLSILVKGFSRQSSLLFKILSSVR-NHQINSDLAQLLLRLDYN 651 (677)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred ---------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHhCch
Confidence 111246899999999999999999999984 466789999999999998
No 2
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=75.09 E-value=4.3 Score=26.93 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=26.6
Q ss_pred CCCCCCCCCcccCCCcCCccccchhhhhhhcccccCCcccccCCCCCchhhH
Q 005763 3 MSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQE 54 (678)
Q Consensus 3 ~~~p~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qE 54 (678)
.++|..|+|...-|||..++-. -.+.||++.+.-..|
T Consensus 6 p~~~e~~Pw~atNPFLde~l~d---------------vqPSPINPFsafFeE 42 (45)
T 2jxc_B 6 PSVTEASPWRATNPFLNETLQD---------------VQPSPINPFSAFFEE 42 (45)
T ss_dssp CCCSCCCCSCSSCSSSSTTTSC---------------CCCCTTCSCTTHHHH
T ss_pred CccccCCCcccCCcchhhhHHh---------------CCCCCCChHHHhhhh
Confidence 4678889999999999988722 224567777665554
No 3
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=42.67 E-value=1.2e+02 Score=24.38 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCchHHHHHhhhhhHHHHHHHHHHH
Q 005763 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL----GRLSIQGLWFYCQPMLGSMQAVSAVI 190 (678)
Q Consensus 133 ~g~v~~Ala~al~~~L~~y~~~v~~lE~~~~~----~~lsL~~L~~~~~~~~~~l~~L~~iv 190 (678)
+..+..-++.-.++.|..|+..|.++|+.+.. ...|.+.|-.-++.....|-.|+.=+
T Consensus 6 P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l 67 (93)
T 3t98_B 6 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQL 67 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788999999999999999999988643 35666666665555555555544433
No 4
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=14.96 E-value=4.9e+02 Score=21.57 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=36.7
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHH
Q 005763 536 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYAAAT 585 (678)
Q Consensus 536 l~~a~~~d~l~~~H~~fL~~i~~~cfL~-~~~l~~~l~~ll~~~~~F~~~~ 585 (678)
|++.-++++++..|..++..+ +.+ ...+...+.=++.+...|.-.-
T Consensus 38 iek~I~PEeiV~iHk~~i~~l----~~~l~e~v~~s~d~L~Evm~gyGlay 84 (111)
T 2j6y_A 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYGMAY 84 (111)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHHHHhHhH
Confidence 456679999999999998887 666 5678888888888888887644
No 5
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=14.65 E-value=3e+02 Score=21.61 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=32.8
Q ss_pred HHHHH-hccCCCHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHH
Q 005763 531 VMHNR-LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 582 (678)
Q Consensus 531 ~f~~~-l~~a~~~d~l~~~H~~fL~~i~~~cfL~-~~~l~~~l~~ll~~~~~F~ 582 (678)
.|-.. |++.-+++|++..|.+++..+ .++ ..++...+.=++.+..-|.
T Consensus 32 ~fs~~~iek~i~PEeiV~iHk~~i~el----~~~l~e~v~~Sfd~L~Evm~gyG 81 (84)
T 1w53_A 32 KFSRKTIEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHcCCCHHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHHHHhC
Confidence 34333 356678999999999877654 455 5677777777776665553
No 6
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=12.94 E-value=6.2e+02 Score=26.58 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHhhhhhHHHHHHHHHHHH
Q 005763 135 LVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIH 191 (678)
Q Consensus 135 ~v~~Ala~al~~~L~~y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~iv~ 191 (678)
..+|-++..+++---++..+..+|..--....+++..|...+......+..+..-+.
T Consensus 249 TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~~v~~~l~ 305 (457)
T 3obv_E 249 TLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQ 305 (457)
T ss_dssp BHHHHHHHHHHHHCGGGGGHHHHCTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCccccCChhhhhhHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544322222222222221123577888777666665555554444333
No 7
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=12.84 E-value=1.4e+02 Score=20.53 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 005763 541 SIDEVIQHHDFFLDKCLRE 559 (678)
Q Consensus 541 ~~d~l~~~H~~fL~~i~~~ 559 (678)
|-+-+...|++||..+.+.
T Consensus 25 D~~Fl~~iHeAYl~sl~~~ 43 (46)
T 2wx4_A 25 DKEFANKLHKAYLNGCSNL 43 (46)
T ss_dssp CTTHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4566888999999887654
No 8
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=12.79 E-value=1.6e+02 Score=19.57 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 005763 137 NHAFAASLRALLLDYE 152 (678)
Q Consensus 137 ~~Ala~al~~~L~~y~ 152 (678)
++|+-.||+.+|.+|.
T Consensus 21 CnavrqALQdLlseY~ 36 (40)
T 4e17_B 21 CNAVRQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566666677777775
No 9
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=11.51 E-value=2e+02 Score=20.21 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005763 541 SIDEVIQHHDFFLDKCLR 558 (678)
Q Consensus 541 ~~d~l~~~H~~fL~~i~~ 558 (678)
|-+-+...|+.||..+.+
T Consensus 27 D~~Fl~~IHeAYl~sl~~ 44 (51)
T 2wx3_A 27 DSSFLSTLHEVYLQVLTK 44 (51)
T ss_dssp CHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 567788899999987654
No 10
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=10.00 E-value=9.7e+02 Score=23.85 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=47.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhhhccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 005763 498 AISRSSLLCR----SMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVER 573 (678)
Q Consensus 498 ~~~~~~~lr~----~m~~Fv~~l~~Y~~~~VIe~~w~~f~~~l~~a~~~d~l~~~H~~fL~~i~~~cfL~~~~l~~~l~~ 573 (678)
.+.+++.|.. .+-.+.+.+..|+...+.+-. .+.-+...=+++|++.|+.| +.+...||-.++...+++.+
T Consensus 269 dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv----~~~~~~~~~V~~LL~l~~k~-~~iv~~~F~~d~~f~~al~~ 343 (354)
T 4a64_A 269 DLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIV----INPEKDKTMRQELDDFKDKV-DHIIDICFLKNEKFINAMKE 343 (354)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHH----HSCCSSSCHHHHHHHHHHHH-HHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHH----cCccchHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHH
Confidence 4455555443 234677777777766543211 01112234689999999965 66778899999988888887
Q ss_pred HHH
Q 005763 574 LKS 576 (678)
Q Consensus 574 ll~ 576 (678)
-+.
T Consensus 344 af~ 346 (354)
T 4a64_A 344 AFE 346 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 744
Done!