Query 005763
Match_columns 678
No_of_seqs 292 out of 858
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 06:49:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005763.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005763hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hyja2 a.121.1.1 (A:83-200) P 23.2 1.4E+02 0.01 22.4 8.5 48 199-249 25-72 (118)
2 d1rkta2 a.121.1.1 (A:83-205) H 20.8 1.7E+02 0.013 22.4 8.6 66 181-249 5-70 (123)
3 d1kxpd3 a.126.1.1 (D:405-473) 16.2 51 0.0037 22.8 2.9 40 526-568 8-57 (69)
4 d1pb6a2 a.121.1.1 (A:86-211) H 14.7 96 0.007 24.0 5.0 35 215-249 35-69 (126)
5 d2hyec2 a.118.17.1 (C:55-401) 13.4 3.9E+02 0.029 24.1 10.2 64 509-578 279-343 (347)
6 d2i10a2 a.121.1.1 (A:79-194) P 12.0 66 0.0048 24.5 3.0 63 185-250 10-73 (116)
7 d2id3a2 a.121.1.1 (A:81-203) P 11.7 2.7E+02 0.02 21.0 7.0 50 197-249 23-72 (123)
8 d1w53a_ a.186.1.2 (A:) Phospho 10.7 2.6E+02 0.019 20.1 5.7 43 536-582 38-81 (84)
9 d1ldja2 a.118.17.1 (A:17-410) 10.4 2.6E+02 0.019 26.0 7.7 75 498-578 302-386 (394)
10 d2g7sa2 a.121.1.1 (A:77-192) P 6.4 4.6E+02 0.033 18.9 8.2 50 197-249 22-71 (116)
No 1
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=23.18 E-value=1.4e+02 Score=22.37 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=39.3
Q ss_pred chhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 005763 199 TGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (678)
Q Consensus 199 ~g~~lL~~L~~~~~~~~Gd~~~~~ll~~ll~~~~~p~~~~l~~Wi~~G~l~ 249 (678)
.||.+.+..-+. ...++.+++.+...+.....-+.+.|.+-+..|.+.
T Consensus 25 ~GC~~~~~~~E~---~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 25 GGCLLTAALSEY---DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp TSCHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCChhHhHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 478777777664 467889999999999998888889999998888773
No 2
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=20.79 E-value=1.7e+02 Score=22.42 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 005763 181 GSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (678)
Q Consensus 181 ~~l~~L~~iv~~~~~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~ll~~~~~p~~~~l~~Wi~~G~l~ 249 (678)
..+.++..++..+... +-.+-.+.++......-||.+++.+...+..-..-+-..|..++..|.+.
T Consensus 5 ~~~~~~d~~~~~l~~~---~~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 5 SISSYLDELTEGLRDV---ADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp HHHHHHHHHHHHTTTG---GGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3445566666665422 22223333444333467999999999999998888888888888888763
No 3
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.25 E-value=51 Score=22.79 Aligned_cols=40 Identities=20% Similarity=0.527 Sum_probs=28.2
Q ss_pred cccHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHHHHcCCChHHH
Q 005763 526 EPNWHVMHNRLQT----------AKSIDEVIQHHDFFLDKCLRECLLHLPDLL 568 (678)
Q Consensus 526 e~~w~~f~~~l~~----------a~~~d~l~~~H~~fL~~i~~~cfL~~~~l~ 568 (678)
+..|.+|.++|.+ ...+.++.+.|.+|-..| |-+++|++.
T Consensus 8 e~tFte~kkkL~e~lr~k~P~as~~~l~~mVekrsdfASkC---CsiNsPPlY 57 (69)
T d1kxpd3 8 ENTFTEYKKKLAERLKAKLPDATPKELAKLVNKRSDFASNC---CSINSPPLY 57 (69)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH---SSTTCCHHH
T ss_pred hccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhHHHHHh---hcCCCCchh
Confidence 4455566666542 347889999999998764 778888764
No 4
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=14.73 E-value=96 Score=23.99 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=28.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 005763 215 AGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (678)
Q Consensus 215 ~Gd~~~~~ll~~ll~~~~~p~~~~l~~Wi~~G~l~ 249 (678)
+|.+.+++.+...+........+.|++|+-.|.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 35 AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 56566667777777888888889999999999874
No 5
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.38 E-value=3.9e+02 Score=24.07 Aligned_cols=64 Identities=6% Similarity=0.108 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 005763 509 MLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 578 (678)
Q Consensus 509 m~~Fv~~l~~Y~~~~VIe~~w~~f~~~l-~~a~~~d~l~~~H~~fL~~i~~~cfL~~~~l~~~l~~ll~~~ 578 (678)
+..+...+..|+...+-+. .... +...=+++|+..|+. .+.+...||-.++.+.+++.+.+.-+
T Consensus 279 ~~~l~~~f~~~i~~~G~~~-----v~~~~~~~~~V~~ll~l~~k-~~~li~~~F~~d~~f~~~l~~af~~~ 343 (347)
T d2hyec2 279 QQALLQHWSEYIKTFGTAI-----VINPEKDKDMVQDLLDFKDK-VDHVIEVCFQKNERFVNLMKESFETF 343 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HSCGGGTTTHHHHHHHHHHH-HHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhCcccchHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4456666666766554211 0011 112348889999986 46778899999999888888876543
No 6
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=11.97 E-value=66 Score=24.54 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=44.8
Q ss_pred HHHHHHHHhh-cCCCchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceecC
Q 005763 185 AVSAVIHKAS-ANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250 (678)
Q Consensus 185 ~L~~iv~~~~-~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~ll~~~~~p~~~~l~~Wi~~G~l~D 250 (678)
+|...++... ....+||.+.+...+. ...|+.+++.+...+......+...+.+-...|.+.+
T Consensus 10 ~l~~~i~~~~~~~~p~GCl~~~~~~E~---~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 10 FLTGRVEVFTAPGQPFGCMTVQAGLAS---GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp HHHHHHHHHC------CCCCSSCBTTT---BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred HHHHHHHHHcCCCCCCCCHHHHhHhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3444444332 3455788887776553 3578999999999999999999999999999998854
No 7
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.73 E-value=2.7e+02 Score=21.02 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=37.6
Q ss_pred CCchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 005763 197 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (678)
Q Consensus 197 ~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~ll~~~~~p~~~~l~~Wi~~G~l~ 249 (678)
...++.++-.+...+ ..++.+...+.+++...-.-+-.++++.+-.|++.
T Consensus 23 ~p~~~~~~~~l~ae~---~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 23 DPRQGRLFRALIAAS---LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344566666555443 45777888888888888888889999999999984
No 8
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.65 E-value=2.6e+02 Score=20.11 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=31.4
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHH
Q 005763 536 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 582 (678)
Q Consensus 536 l~~a~~~d~l~~~H~~fL~~i~~~cfL~-~~~l~~~l~~ll~~~~~F~ 582 (678)
|++-=++++++..|.+++..+ .++ .+.+...++=++.+..-|.
T Consensus 38 iek~IsPEeIV~iHk~~l~el----~~~~~e~v~~Sfd~LlEVm~gyG 81 (84)
T d1w53a_ 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHHcC
Confidence 456679999999999887764 454 4677777777777766554
No 9
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.35 E-value=2.6e+02 Score=26.03 Aligned_cols=75 Identities=9% Similarity=0.070 Sum_probs=47.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhhhccccHHHHHHHhccCC------CHHHHHHHHHHHHHHHHHHHcCCChHH
Q 005763 498 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQTAK------SIDEVIQHHDFFLDKCLRECLLHLPDL 567 (678)
Q Consensus 498 ~~~~~~~lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~f~~~l~~a~------~~d~l~~~H~~fL~~i~~~cfL~~~~l 567 (678)
.+.+++.|..+ +..+...+..|+...+.+ ..+...+.. =+++|+..|+. ++.+...||-.++.+
T Consensus 302 ~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G~~-----~i~~~~~~~~~~~~~~V~~ll~l~~~-~~~ii~~~F~~d~~f 375 (394)
T d1ldja2 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA-----AIEKCGEAALNDPKMYVQTVLDVHKK-YNALVMSAFNNDAGF 375 (394)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----HHHHHTTSGGGCHHHHHHHHHHHHHH-HHHHHHTTTTTCHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-----HHHhhhhcccCChHHHHHHHHHHHHH-HHHHHHHHcCCCHHH
Confidence 44555544433 355667777776665432 122222111 16788888885 678889999999998
Q ss_pred HHHHHHHHHHH
Q 005763 568 LKKVERLKSLC 578 (678)
Q Consensus 568 ~~~l~~ll~~~ 578 (678)
.+++.+-+.-+
T Consensus 376 ~~~l~~af~~f 386 (394)
T d1ldja2 376 VAALDKACGRF 386 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876543
No 10
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.36 E-value=4.6e+02 Score=18.94 Aligned_cols=50 Identities=16% Similarity=0.018 Sum_probs=34.7
Q ss_pred CCchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 005763 197 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (678)
Q Consensus 197 ~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~ll~~~~~p~~~~l~~Wi~~G~l~ 249 (678)
..+||.+-+.-.+. ..-++.+++.+...+.....-+-+.+.+-...|.+.
T Consensus 22 ~~~gCl~~~~a~E~---~~~~~~v~~~~~~~~~~~~~~l~~~l~~a~~~g~~~ 71 (116)
T d2g7sa2 22 THPFCVCALLASEI---PVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLV 71 (116)
T ss_dssp SSCSCHHHHHHTTG---GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred CCCCCHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45688776665553 356778888888777777777777777777777664
Done!