BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005764
(678 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 153/259 (59%), Gaps = 9/259 (3%)
Query: 356 FSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVG 415
F +TPKE+ A+ + KY ++ ++VGI + ++V++ +I+ ++ VG G
Sbjct: 53 FHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTG 112
Query: 416 LMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDT 475
+MG MGNKG V++ + +C+V SHL + ++ +RRN D +I R +F +
Sbjct: 113 IMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDPS 170
Query: 476 DQPQTIPSHDQIFWFGDLNYRLNMMDTE-VRELVAQKRWDKLINSDQLSKELHSGHVFEG 534
P TI +HD I W GDLNYR+ +D E V++L+ +K + L DQL ++ + VFEG
Sbjct: 171 LPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEG 230
Query: 535 WKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAY-TRAEIL 593
+ EG + F PTYKY+ SD + EK R+PAWCDRILW GK I QL+Y + +
Sbjct: 231 FTEGELTFQPTYKYDTGSDDW-----DTSEKCRAPAWCDRILWKGKNITQLSYQSHMALK 285
Query: 594 LSDHRPVSSTFLVQVEVLD 612
SDH+PVSS F + V V++
Sbjct: 286 TSDHKPVSSVFDIGVRVVN 304
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 152/258 (58%), Gaps = 9/258 (3%)
Query: 356 FSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVG 415
F +TPKE+ A+ + KY ++ ++VGI + ++V++ +I+ ++ VG G
Sbjct: 56 FHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTG 115
Query: 416 LMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDT 475
+MG MGNKG V++ + +C+V SHL + ++ +RRN D +I R +F +
Sbjct: 116 IMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDPS 173
Query: 476 DQPQTIPSHDQIFWFGDLNYRLNMMDTE-VRELVAQKRWDKLINSDQLSKELHSGHVFEG 534
P TI +HD I W GDLNYR+ +D E V++L+ +K + L DQL ++ + VFEG
Sbjct: 174 LPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEG 233
Query: 535 WKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAY-TRAEIL 593
+ EG + F PTYKY+ SD + EK R+PAWCDRILW GK I QL+Y + +
Sbjct: 234 FTEGELTFQPTYKYDTGSDDW-----DTSEKCRAPAWCDRILWKGKNITQLSYQSHMALK 288
Query: 594 LSDHRPVSSTFLVQVEVL 611
SDH+PVSS F + V V+
Sbjct: 289 TSDHKPVSSVFDIGVRVV 306
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 14/243 (5%)
Query: 375 SRPKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQ 434
S P YV++ S Q+VG + I+ ++ I N++ + GL G GNKG+V++
Sbjct: 98 SGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYED 157
Query: 435 SRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494
+ LC + SHL +G + E R+ D I RF + ++I +HD + WFGD N
Sbjct: 158 TGLCFITSHLAAGYTNYDE--RDHDYRTIASGLRFR------RGRSIFNHDYVVWFGDFN 209
Query: 495 YRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINSDR 554
YR+++ EV +AQ + L DQL+K++ +G VF + E I FPPTYK++I +D
Sbjct: 210 YRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDI 269
Query: 555 YVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHR 614
Y +K R PAW DRIL+ G+ + +Y + SDHRP+ +T+ + +D
Sbjct: 270 Y-----DTSDKHRVPAWTDRILYRGELVPH-SYQSVPLYYSDHRPIYATYEANIVKVDRE 323
Query: 615 KLK 617
K K
Sbjct: 324 KKK 326
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 103 KDVRVTIGTWNVAGRQPYEDLDIDDWLCTQEP--ADIYIFGFQEVVPLNAGNVLGAESSR 160
K+V++ + ++N+ G L+ +WL + ADIY+ GFQE+V L V+ A+ ++
Sbjct: 23 KNVKIFVASYNLNGCSATTKLE--NWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAK 80
Query: 161 PIPKWEAIIRRTLN 174
+WE+ ++R LN
Sbjct: 81 R-REWESCVKRLLN 93
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 117/240 (48%), Gaps = 17/240 (7%)
Query: 379 YVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLC 438
Y I + + I V++ V+ I+++ S V G+ +GNKG+V VS +
Sbjct: 81 YRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFG 140
Query: 439 LVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFS----SVFDTDQPQTIPSHDQIFWFGDLN 494
V HLTSG + A RRN + +I R + FD T +FWFGDLN
Sbjct: 141 FVNCHLTSGNEKTA--RRNQNYLDILRLLSLGDRQLNAFDISLRFT-----HLFWFGDLN 193
Query: 495 YRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINS-D 553
YRL+M E+ +++K ++ L+ DQL+ E VF + E I+FPPTY+YE S D
Sbjct: 194 YRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRD 253
Query: 554 RYVGENPK-EGEKKRSPAWCDRILWLGKGIKQLAYTRA----EILLSDHRPVSSTFLVQV 608
Y K G + P+WCDRILW + +I+ SDH PV TF V V
Sbjct: 254 TYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGV 313
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 28/249 (11%)
Query: 377 PKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSR 436
P YV + S +Y+S+++R+ L + ++ S V ++ + KG++ +S T F +
Sbjct: 85 PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTS 144
Query: 437 LCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIP----------SHDQ 486
+ SH TSG DG R D + RT + V + P T P D+
Sbjct: 145 FLFITSHFTSG--DGKVAERLLDYT----RTVQALVLPRNVPDTNPYRSSAADVTTRFDE 198
Query: 487 IFWFGDLNYRLNMMDTEVRELVAQK---RWDKLINSDQLSKELHSGHVFEGWKEGVINFP 543
+FWFGD N+RL+ T V L+ Q L+ DQL +E+ G +F+G++E I+F
Sbjct: 199 VFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFL 258
Query: 544 PTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGK---GIKQLAYTRAE-ILLSDHRP 599
P+YK++I D Y K+R+P++ DR+L+ + I ++Y+ I SDHRP
Sbjct: 259 PSYKFDIGKDTY-----DSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRP 313
Query: 600 VSSTFLVQV 608
V F V+V
Sbjct: 314 VYGLFRVKV 322
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 26/189 (13%)
Query: 424 GSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPS 483
G + S T++ R S ++ + DV+ + + + D + + PS
Sbjct: 116 GGIVTSFTIYNKRFSFTTSRMS-----------DEDVTSTNTKYAYDTRLDYSK-KDDPS 163
Query: 484 HDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFP 543
D +FW GDLN R+ T + LV Q D L+ DQL K+ +F+GW E + F
Sbjct: 164 -DFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQL-KKAKEQKLFDGWTEPQVTFK 221
Query: 544 PTYKYEINSDRYVGENPKEGEKKRSPAWCDRILW---LGKGIKQLAY-TRAEILLSDHRP 599
PTYK++ N+D Y + +P+W DR L+ GK I+ L+Y + ++HRP
Sbjct: 222 PTYKFKPNTDEY--------DLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRP 273
Query: 600 VSSTFLVQV 608
V + F V +
Sbjct: 274 VLAKFRVTL 282
>pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From
Gluconobacter Oxydans
Length = 348
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 80 SKGYHLRHRRGKSETLRVQYINTKDVRVTIGTWNVAG---RQPYED-------LDIDDWL 129
S G R S+T+R+ I+T RV +GTW + G P +D +D+ +
Sbjct: 7 SSGLVPRGSHMASDTIRIPGIDTPLSRVALGTWAIGGWMWGGPDDDNGVRTIHAALDEGI 66
Query: 130 CTQEPADIYIFGFQEVV 146
+ A +Y FG E +
Sbjct: 67 NLIDTAPVYGFGHSEEI 83
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 133 EPADIYIFGFQEVVPLNAGNVLGAESSRPIPKWEAIIRRTLNKSAEPENKY 183
+P+ I + P+ GN L E +R P+++ + + KS N Y
Sbjct: 32 QPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAY 82
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 270 ATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGNGLKRSHHSYGNLV 325
AT V +L L R FSS +LV P +SP+ NG K S G L+
Sbjct: 171 ATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLL 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,721,303
Number of Sequences: 62578
Number of extensions: 726050
Number of successful extensions: 1391
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 11
length of query: 678
length of database: 14,973,337
effective HSP length: 105
effective length of query: 573
effective length of database: 8,402,647
effective search space: 4814716731
effective search space used: 4814716731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)