Query 005764
Match_columns 678
No_of_seqs 402 out of 1179
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 13:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 3E-157 6E-162 1298.3 45.7 609 1-633 1-621 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 2.8E-90 6.1E-95 780.2 25.0 324 77-618 513-843 (1080)
3 smart00128 IPPc Inositol polyp 100.0 8E-76 1.7E-80 618.2 27.8 225 377-612 80-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 6.3E-65 1.4E-69 543.3 19.6 322 78-616 7-336 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 3.3E-30 7.1E-35 265.6 10.6 175 420-604 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 1.8E-28 4E-33 231.6 12.3 142 378-520 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.7 8.2E-18 1.8E-22 174.5 5.9 166 420-606 154-388 (391)
8 TIGR03395 sphingomy sphingomye 98.5 2.7E-06 5.8E-11 89.7 14.4 70 418-496 116-189 (283)
9 PRK05421 hypothetical protein; 98.3 5.4E-06 1.2E-10 86.1 13.0 127 423-607 135-262 (263)
10 PF03372 Exo_endo_phos: Endonu 98.2 6.4E-07 1.4E-11 86.3 2.7 97 388-500 72-172 (249)
11 COG3568 ElsH Metal-dependent h 97.6 0.00042 9.1E-09 72.8 11.1 55 423-494 119-174 (259)
12 PRK11756 exonuclease III; Prov 97.4 0.00072 1.6E-08 69.9 9.4 64 423-496 89-155 (268)
13 TIGR00633 xth exodeoxyribonucl 97.2 0.0036 7.9E-08 63.2 11.9 35 107-145 1-36 (255)
14 PTZ00297 pantothenate kinase; 97.1 0.0049 1.1E-07 78.1 13.7 70 420-495 130-206 (1452)
15 smart00476 DNaseIc deoxyribonu 96.2 0.027 5.8E-07 59.9 10.2 102 376-495 77-187 (276)
16 PLN03144 Carbon catabolite rep 95.8 0.031 6.8E-07 65.3 9.2 62 436-512 418-480 (606)
17 KOG3873 Sphingomyelinase famil 95.5 0.074 1.6E-06 58.4 9.6 200 382-609 73-295 (422)
18 COG3021 Uncharacterized protei 95.3 0.081 1.8E-06 57.1 9.3 132 421-606 173-307 (309)
19 TIGR00195 exoDNase_III exodeox 95.3 0.085 1.9E-06 54.1 9.1 35 107-145 1-35 (254)
20 PRK13911 exodeoxyribonuclease 95.1 0.21 4.6E-06 52.2 11.6 35 108-145 2-36 (250)
21 PF14529 Exo_endo_phos_2: Endo 93.8 0.071 1.5E-06 47.4 3.8 33 569-601 86-119 (119)
22 PRK15251 cytolethal distending 93.6 0.21 4.5E-06 53.3 7.6 56 421-495 140-195 (271)
23 PRK13911 exodeoxyribonuclease 92.5 0.05 1.1E-06 56.8 1.0 55 425-495 89-147 (250)
24 KOG2756 Predicted Mg2+-depende 89.5 1.1 2.3E-05 48.1 7.3 62 426-497 195-256 (349)
25 COG0708 XthA Exonuclease III [ 87.1 0.11 2.3E-06 55.1 -1.8 34 108-145 2-35 (261)
26 KOG2338 Transcriptional effect 80.3 2.5 5.4E-05 48.4 5.2 94 392-495 204-303 (495)
27 PRK11756 exonuclease III; Prov 77.5 0.59 1.3E-05 48.4 -0.7 34 108-145 2-35 (268)
28 TIGR00633 xth exodeoxyribonucl 70.8 1.6 3.5E-05 44.2 0.5 53 435-497 100-154 (255)
29 TIGR00195 exoDNase_III exodeox 66.8 1.9 4.1E-05 44.2 0.1 53 436-498 98-152 (254)
30 PRK15251 cytolethal distending 61.8 6.3 0.00014 42.3 2.8 40 107-151 25-71 (271)
31 PRK05421 hypothetical protein; 50.7 8.5 0.00018 40.2 1.6 36 106-145 43-78 (263)
32 TIGR02616 tnaC_leader tryptoph 26.7 14 0.00031 26.2 -0.8 16 17-32 6-21 (26)
33 PF08053 Tna_leader: Tryptopha 24.2 15 0.00034 25.0 -1.0 14 17-30 8-21 (24)
34 KOG3870 Uncharacterized conser 22.6 33 0.00072 38.8 0.5 25 482-515 350-374 (434)
35 PRK09806 tryptophanase leader 20.8 19 0.00041 25.0 -1.1 15 17-31 8-22 (26)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=2.9e-157 Score=1298.27 Aligned_cols=609 Identities=76% Similarity=1.200 Sum_probs=558.8
Q ss_pred CCCccCCcccccChHHHHHhhhccCCCCccccCCccCCCCCcccccccccccccccccccccccccccCcccccccCCC-
Q 005764 1 MRTQRGKRSEAFWPSIVMKKWLNIKPKVYDFSEDEIDTETESEDDACSVKDARVHIREDHLHKAQENHSDCQSQISETP- 79 (678)
Q Consensus 1 m~~~~~k~~~~~Wp~~v~rKwlni~~~~~df~aD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (678)
||++++|++|+||||+||||||||++|++||||||.|+++++|+++|+.++.+..++|+|+.+.++++..++.++++.|
T Consensus 1 m~~~~~k~~~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (621)
T PLN03191 1 MRTRRGKRPEAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGV 80 (621)
T ss_pred CCccccCccccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCcc
Confidence 9999999999999999999999999999999999999988899999999999999999999999999999888877655
Q ss_pred --CchhhHhhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeeeeeCCCCCccccC
Q 005764 80 --SKGYHLRHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEVVPLNAGNVLGAE 157 (678)
Q Consensus 80 --~~~~~~~~~r~~~e~~r~~y~~~~~~ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEiV~Lna~nvl~~e 157 (678)
.+.|..++|||++||+|+|||+++++|||||||||||+.|+.+++|.+||.+++|+|||||||||||||||||||+++
T Consensus 81 ~~~~~~~~~~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~ 160 (621)
T PLN03191 81 SVSKGYSSKHRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAE 160 (621)
T ss_pred ccccccchhhhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccc
Confidence 678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhccCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCCCcccc
Q 005764 158 SSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNVGREDL 237 (678)
Q Consensus 158 d~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (678)
++.|+++|+.+|+++||+..++.++|+|||+||||++ .+|+ ++|||+.|+|+.....++.+.-.....+
T Consensus 161 ~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~-~~~~---~~~e~~~~~d~~~~~~~~~~~~~~~~~~------- 229 (621)
T PLN03191 161 DSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVL-RTSI---VADELAEEVDSLPLEMMNNEFIDAATGC------- 229 (621)
T ss_pred cCCchhhHHHHHHHHHhccCCCCCccccCCCCCCccc-CCcc---hhhhhhhhcccChhhhcccccccccccc-------
Confidence 9999999999999999999999999999999999999 4444 6788999988855533332210000000
Q ss_pred hhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCcccccccCCCcccc
Q 005764 238 KKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGNGLKRS 317 (678)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~ 317 (678)
-....+.+++++|++.+++...+.+.+|++|+|+||+|+||||+|||+|++|++|+++.++.+++++
T Consensus 230 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p~~~~~~~~~~~~~~~~~~ 296 (621)
T PLN03191 230 -------------PSLEPERNKNIGWPEHSLDATPQVVSSNSKLRRVFSSSARLGFKWPENPSLFSPQRFALNARGLKRS 296 (621)
T ss_pred -------------cccchhhccccCCcccccccCcccccccccceeeeccccccccCCCCCccccCchhhcccccccchh
Confidence 0122556677889999999888888899999999999999999999999999999999999999999
Q ss_pred cccccccccchhhccCCc------ccccccccCCCCCCcccccccCCCchhhcchHHHHhhccCCCCEEEEEeeeceeEE
Q 005764 318 HHSYGNLVSTWMEQQEEP------EVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIY 391 (678)
Q Consensus 318 ~~s~~~~~s~~~~~~~~~------~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~S~qmvGi~ 391 (678)
++||+++++.|.++++.. ...+|.+...+.+++++++.+++++..|.++..+........+|++|.|+|||||+
T Consensus 297 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvkV~S~qLvGl~ 376 (621)
T PLN03191 297 HRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCRKVKQKYVRIVSKQMVGIY 376 (621)
T ss_pred hhccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhccCCCCEEEEEEEeeeeEE
Confidence 999999999999766543 33445555666667788889999999888888888888899999999999999999
Q ss_pred EEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCC
Q 005764 392 VSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSS 471 (678)
Q Consensus 392 L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~ 471 (678)
|+||||++++++|++|++++|+||+||++||||||+|+|.|++|+|||||||||||++++++++||+|+.+|++++.|..
T Consensus 377 L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~ 456 (621)
T PLN03191 377 VSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSS 456 (621)
T ss_pred EEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCc
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999987
Q ss_pred CCCCCCCCCCCCCceEEEcCcccccccCChHHHHHHHHhcchhHHhhhhhhhHHHhcCCcccCccccCcCCCCCcccccC
Q 005764 472 VFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEIN 551 (678)
Q Consensus 472 ~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~ 551 (678)
..+...|..|.+||+|||||||||||++++++++++|.+++|+.||++|||++|+++|++|.||+||+|+|||||||+.|
T Consensus 457 ~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~g 536 (621)
T PLN03191 457 VLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEIN 536 (621)
T ss_pred ccccCCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccC
Confidence 66666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCCcccCCCcccceeeecCceeEEeeccCCCCCCCCcCceeEEEEEEEeechhhhhhhcccCcce---ec
Q 005764 552 SDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKRALNVSSAV---VH 628 (678)
Q Consensus 552 Sd~Y~~~~~k~s~KkR~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~v~vv~~~kl~~~l~~~~a~---v~ 628 (678)
++.|+++++++++|+|+|||||||||++++++++.|.+.++++||||||+|.|.++|++++++|+|+++++++|+ ||
T Consensus 537 Sd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~~k~q~~~~~~~a~~~~~~ 616 (621)
T PLN03191 537 SDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDHRKLQRALNVNSAAASAVH 616 (621)
T ss_pred CccccccccccccCccccchhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCHHHHHhhhhcchhhhhccC
Confidence 999998888899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred Ccccc
Q 005764 629 PDIFL 633 (678)
Q Consensus 629 ~e~~~ 633 (678)
||+.+
T Consensus 617 ~~~~~ 621 (621)
T PLN03191 617 PEPSF 621 (621)
T ss_pred CccCC
Confidence 99853
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-90 Score=780.20 Aligned_cols=324 Identities=42% Similarity=0.771 Sum_probs=300.4
Q ss_pred CCCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC------CCCCEEEEeeeeeeeCC
Q 005764 77 ETPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQ------EPADIYIFGFQEVVPLN 149 (678)
Q Consensus 77 ~~~~~~~~~-~~~r~~~e~~r~~y~~~~~~ri~vgTwNV~G~~p~~~ldl~~WL~~~------~~~DIYvlGfQEiV~Ln 149 (678)
-+|++.|+. +|+.|.+ +|+..++||||||||||||+.+....||++||++. .++|||||||||||+||
T Consensus 513 ~dpv~~yv~~~L~er~~-----eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLn 587 (1080)
T KOG0566|consen 513 YDPVHEYVLKELRERRS-----EYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELN 587 (1080)
T ss_pred cCchhHHHHHHHHHhhh-----hhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcC
Confidence 378888887 7887765 49999999999999999997776667899999974 37999999999999999
Q ss_pred CCCccccCCCCChhHHHHHHHHHhccCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccC
Q 005764 150 AGNVLGAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNG 229 (678)
Q Consensus 150 a~nvl~~ed~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~ 229 (678)
||||+.++.. ....|++.|+++||+.
T Consensus 588 ag~iv~As~t-k~~~Wee~i~~~Ln~~----------------------------------------------------- 613 (1080)
T KOG0566|consen 588 AGNIVSASTT-KRRFWEEKILKTLNRY----------------------------------------------------- 613 (1080)
T ss_pred ccceeccChH-HHHHHHHHHHHHhcCC-----------------------------------------------------
Confidence 9999988554 5899999999998742
Q ss_pred CCCCcccchhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCcccccc
Q 005764 230 CNVGREDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAI 309 (678)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~ 309 (678)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccccccccccccchhhccCCcccccccccCCCCCCcccccccCCCchhhcchHHHHhhccCCCCEEEEEeeecee
Q 005764 310 NGNGLKRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVG 389 (678)
Q Consensus 310 ~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~S~qmvG 389 (678)
..+|+++.|.||||
T Consensus 614 ------------------------------------------------------------------~~kYvlL~s~QlvG 627 (1080)
T KOG0566|consen 614 ------------------------------------------------------------------KNKYVLLRSEQLVG 627 (1080)
T ss_pred ------------------------------------------------------------------CCceEEEehhhhhe
Confidence 02699999999999
Q ss_pred EEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhccc
Q 005764 390 IYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRF 469 (678)
Q Consensus 390 i~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F 469 (678)
++|++|+|.+..++|++|..++++||++|..||||||+|||.++.|+|||||+|||||+.+ +++||.||.+|.++++|
T Consensus 628 v~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~sn--v~ERn~DY~tI~r~l~F 705 (1080)
T KOG0566|consen 628 VCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSN--VEERNEDYKTIARKLRF 705 (1080)
T ss_pred eeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccch--HhhhhhhHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999875 67899999999999999
Q ss_pred CCCCCCCCCCCCCCCceEEEcCcccccccCChHHHHHHHHhcchhHHhhhhhhhHHHhcCCcccCccccCcCCCCCcccc
Q 005764 470 SSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYE 549 (678)
Q Consensus 470 ~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~ 549 (678)
+. ..+|.+||+|||||||||||++++++|+.+|.+++|+.|+++|||++||.+|.+|.||+|++|+|+||||||
T Consensus 706 p~------Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD 779 (1080)
T KOG0566|consen 706 PR------GRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYD 779 (1080)
T ss_pred cC------CccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCccccc
Confidence 74 467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCCCCcccCCCcccceeeecCceeEEeeccCCCCCCCCcCceeEEEEEEEeechhhhhh
Q 005764 550 INSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKR 618 (678)
Q Consensus 550 ~~Sd~Y~~~~~k~s~KkR~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~v~vv~~~kl~~ 618 (678)
.||+.|| +|+|+|+|||||||||++..+.++.|.+.++++||||||+|+|.++|..|+.+|..+
T Consensus 780 ~gTd~YD-----TSeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~ 843 (1080)
T KOG0566|consen 780 PGTDDYD-----TSEKCRTPAWTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKLR 843 (1080)
T ss_pred CCCCccc-----cchhccCccchhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHHH
Confidence 9999999 489999999999999999999999999999999999999999999999999766543
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=8e-76 Score=618.18 Aligned_cols=225 Identities=40% Similarity=0.738 Sum_probs=206.9
Q ss_pred CCEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHH
Q 005764 377 PKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRR 456 (678)
Q Consensus 377 ~~Y~~v~S~qmvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rR 456 (678)
..|+++++.+|+||+|+||+|.++..+|+++.+++|++|++|.+||||||+|+|.+.+++||||||||+||+++ .++|
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R 157 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQR 157 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999764 7899
Q ss_pred HHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccccCCh-HHHHHHHHhcchhHHhhhhhhhHHHhcCCcccCc
Q 005764 457 NSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMD-TEVRELVAQKRWDKLINSDQLSKELHSGHVFEGW 535 (678)
Q Consensus 457 N~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~-~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 535 (678)
|+|+.+|++.+.|+... ...+.+||++||||||||||++++ ++++++|++++|+.|+++|||+.+++++.+|.||
T Consensus 158 ~~~~~~I~~~~~f~~~~----~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f 233 (310)
T smart00128 158 NQDYKTILRALSFPERA----ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGF 233 (310)
T ss_pred HHHHHHHHHhcCCCCCc----cccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcC
Confidence 99999999999886421 112678999999999999999988 8999999999999999999999999999999999
Q ss_pred cccCcCCCCCcccc-cCCcccCCCCCCCCCcccCCCcccceeeec--CceeEEe-ecc-CCCCCCCCcCceeEEEEEEEe
Q 005764 536 KEGVINFPPTYKYE-INSDRYVGENPKEGEKKRSPAWCDRILWLG--KGIKQLA-YTR-AEILLSDHRPVSSTFLVQVEV 610 (678)
Q Consensus 536 ~Eg~I~FpPTYKy~-~~Sd~Y~~~~~k~s~KkR~PAWCDRIL~~g--~~i~~l~-Y~s-~e~~~SDHRPV~A~F~v~v~v 610 (678)
.|++|+|||||||+ .|++.|++ ++|+|+|||||||||+. .++.++. |.+ .++.+||||||+|.|.+++..
T Consensus 234 ~E~~I~F~PTYK~~~~~t~~Yd~-----~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~ 308 (310)
T smart00128 234 QEGPITFPPTYKYDSVGTETYDT-----SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRLKVTA 308 (310)
T ss_pred ccCCcCCCCCeeecCCCCccccC-----cccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEEEEEe
Confidence 99999999999999 99999984 67899999999999994 4566665 887 689999999999999999986
Q ss_pred ec
Q 005764 611 LD 612 (678)
Q Consensus 611 v~ 612 (678)
++
T Consensus 309 ~~ 310 (310)
T smart00128 309 VD 310 (310)
T ss_pred cC
Confidence 53
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-65 Score=543.32 Aligned_cols=322 Identities=36% Similarity=0.625 Sum_probs=286.6
Q ss_pred CCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC----CCCCCEEEEeeeeeeeCCCCC
Q 005764 78 TPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCT----QEPADIYIFGFQEVVPLNAGN 152 (678)
Q Consensus 78 ~~~~~~~~-~~~r~~~e~~r~~y~~~~~~ri~vgTwNV~G~~p~~~ldl~~WL~~----~~~~DIYvlGfQEiV~Lna~n 152 (678)
+|++.|+. .++.+++ +|+-.+++.+|++|+|++|..| ..++..||++ .+.+|+||+||||+|+|++|.
T Consensus 7 ~p~~~y~~~~l~~~~s-----k~~~~~~~~~f~~~~n~~~~~~--k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~s 79 (460)
T COG5411 7 DPRHPYIVAVLRQRRS-----KYVIEKDVSIFVSTFNPPGKPP--KASTKRWLFPEIEATELADLYVVGLQEVVELTPGS 79 (460)
T ss_pred CCCchhHHHHHHHHhh-----hheeecceeeEeccccCCCCCc--hhhhhhhcccccccccccceEEeccceeeeccchh
Confidence 68888887 6676655 5999999999999999999776 4458999998 246899999999999999999
Q ss_pred ccccCCCCChhHHHHHHHHHhccCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCC
Q 005764 153 VLGAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNV 232 (678)
Q Consensus 153 vl~~ed~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~ 232 (678)
|+++........|++.+-.+||. .
T Consensus 80 ils~~p~~rl~~wes~~~~~Ln~-~------------------------------------------------------- 103 (460)
T COG5411 80 ILSADPYDRLRIWESKVLDCLNG-A------------------------------------------------------- 103 (460)
T ss_pred hccCCcccccchhHHHHHHHhcc-c-------------------------------------------------------
Confidence 99875333346777766666653 1
Q ss_pred CcccchhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCcccccccCC
Q 005764 233 GREDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGN 312 (678)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~~~ 312 (678)
T Consensus 104 -------------------------------------------------------------------------------- 103 (460)
T COG5411 104 -------------------------------------------------------------------------------- 103 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccccchhhccCCcccccccccCCCCCCcccccccCCCchhhcchHHHHhhccCCCCEEEEEeeeceeEEE
Q 005764 313 GLKRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYV 392 (678)
Q Consensus 313 ~~~~~~~s~~~~~s~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~S~qmvGi~L 392 (678)
+..++|.++.+.||.|+++
T Consensus 104 -------------------------------------------------------------~~~eky~~l~s~q~~~~~~ 122 (460)
T COG5411 104 -------------------------------------------------------------QSDEKYSLLRSPQLGGILL 122 (460)
T ss_pred -------------------------------------------------------------ccCCceEEecchhccCcce
Confidence 1124688899999999999
Q ss_pred EEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCC
Q 005764 393 SIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSV 472 (678)
Q Consensus 393 ~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~ 472 (678)
.||.+.+....+.+|....-+||++|..+|||+|+++|.+..+.||||+|||+||..+ .++|+.||..|.+.++|++
T Consensus 123 ~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I~~~i~f~~- 199 (460)
T COG5411 123 RVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IEERIFDYRSIASNICFSR- 199 (460)
T ss_pred EEeeeccccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HHHHHHHHHHHHHheecCC-
Confidence 9999999999999999999999999999999999999999999999999999999864 6789999999999999963
Q ss_pred CCCCCCCCCCCCceEEEcCcccccccCChHHHHHHHHhcc--hhHHhhhhhhhHHHhcCCcccCccccCcCCCCCccccc
Q 005764 473 FDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKR--WDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEI 550 (678)
Q Consensus 473 ~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~ 550 (678)
...|++||+|||+|||||||++.+++++..+...+ ++.|+++|||..|+..|.+|.||+|..|+|||||||+.
T Consensus 200 -----g~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~ 274 (460)
T COG5411 200 -----GLRIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDY 274 (460)
T ss_pred -----CceecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeec
Confidence 35789999999999999999999999999988777 88899999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCcccCCCcccceeeecCceeEEeeccCC-CCCCCCcCceeEEEEEEEeechhhh
Q 005764 551 NSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAE-ILLSDHRPVSSTFLVQVEVLDHRKL 616 (678)
Q Consensus 551 ~Sd~Y~~~~~k~s~KkR~PAWCDRIL~~g~~i~~l~Y~s~e-~~~SDHRPV~A~F~v~v~vv~~~kl 616 (678)
|++.|+. ++|.|+||||||||+++..+.+++|.+.. +++||||||+|+|.+.+.++|+.+.
T Consensus 275 gt~~ydt-----sdk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~k 336 (460)
T COG5411 275 GTDEYDT-----SDKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSKK 336 (460)
T ss_pred CCccccc-----cccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcchh
Confidence 9999984 78999999999999999989999999965 9999999999999999999997653
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.96 E-value=3.3e-30 Score=265.61 Aligned_cols=175 Identities=29% Similarity=0.441 Sum_probs=130.9
Q ss_pred cCCceEEEEEEEEcCEEEEEecccCCCCCCChhH---------HHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEc
Q 005764 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAE---------QRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWF 490 (678)
Q Consensus 420 lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~---------~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~ 490 (678)
.+.||.+.+|++|+++.|||||+||.++..+... ..|..++..|+.+ +. ..+..++++|||
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r--~~--------~~~~~~~~lF~f 134 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAE--CS--------AFISPSDPLFIF 134 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHH--Hh--------hccCCCCcEEEe
Confidence 6889999999999999999999999999876542 3577888888875 22 123467899999
Q ss_pred CcccccccCChH-H-HHH------HH------HhcchhHHhhhhhhhHHHhc-------------CCcccCccccCcCCC
Q 005764 491 GDLNYRLNMMDT-E-VRE------LV------AQKRWDKLINSDQLSKELHS-------------GHVFEGWKEGVINFP 543 (678)
Q Consensus 491 GDLNYRI~l~~~-e-v~~------lI------~~~~~~~LL~~DQL~~e~~~-------------g~vF~gf~Eg~I~Fp 543 (678)
||||||++...- + .++ .+ ....|.+||++|||..|++. .+.|.++.|.+|+||
T Consensus 135 GDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~Fp 214 (356)
T PTZ00312 135 GDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFP 214 (356)
T ss_pred ccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCC
Confidence 999999995432 1 110 11 13468899999999999995 678889999999999
Q ss_pred CCcccccC----------------CcccCC---------C---------------------------CC-CCCCcccCCC
Q 005764 544 PTYKYEIN----------------SDRYVG---------E---------------------------NP-KEGEKKRSPA 570 (678)
Q Consensus 544 PTYKy~~~----------------Sd~Y~~---------~---------------------------~~-k~s~KkR~PA 570 (678)
||||.... ...|.. + -| ...-+.|+||
T Consensus 215 PTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r~pa 294 (356)
T PTZ00312 215 PTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDRLPA 294 (356)
T ss_pred CcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcccchh
Confidence 99993321 001110 0 01 1234899999
Q ss_pred cccceeeecCc----------------------------eeEEeeccCCCCCCCCcCceeEE
Q 005764 571 WCDRILWLGKG----------------------------IKQLAYTRAEILLSDHRPVSSTF 604 (678)
Q Consensus 571 WCDRIL~~g~~----------------------------i~~l~Y~s~e~~~SDHRPV~A~F 604 (678)
|||||||...+ .....|.+.++..+||.+|...|
T Consensus 295 wcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 295 WCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred hhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 99999998432 23467889999999999998876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-28 Score=231.61 Aligned_cols=142 Identities=45% Similarity=0.722 Sum_probs=128.7
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHH
Q 005764 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (678)
Q Consensus 378 ~Y~~v~S~qmvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN 457 (678)
.|++++++||+|+++.+|++.++..++.+++++++++|+||++||||+|++++.++++.+|||||||+||.++.+ ++||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999987643 3399
Q ss_pred HhHHHHHhhcccCCCCCCCCCCCCCC-CceEEEcCcccccccCC-hHHHHHHHHhcchhHHhhhh
Q 005764 458 SDVSEIRRRTRFSSVFDTDQPQTIPS-HDQIFWFGDLNYRLNMM-DTEVRELVAQKRWDKLINSD 520 (678)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~~p~~I~d-hD~Vfw~GDLNYRI~l~-~~ev~~lI~~~~~~~LL~~D 520 (678)
+|+.+|+.++.|........|..+.. ||.|||+||||||+..+ +.++..++..+.|+.|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999999986555555555554 89999999999999988 88889999999999888876
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.70 E-value=8.2e-18 Score=174.48 Aligned_cols=166 Identities=31% Similarity=0.459 Sum_probs=106.3
Q ss_pred cCCceEEEEEEEEcCEEEEEecccCCCCCCChh---------HHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEc
Q 005764 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGA---------EQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWF 490 (678)
Q Consensus 420 lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~---------~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~ 490 (678)
++.||-.-.++.|++..|.|||.||-....+-. ...|.+.+.-++.++.= .=...|.+|+|
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~----------~~~~~~~~fVf 223 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE----------EGLRNDAIFVF 223 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh----------hccCceEEEEe
Confidence 577999999999999999999999966533211 12344444445544311 11245689999
Q ss_pred CcccccccCChH-----------HHH--------HH---------------HHhcchh-------------HHhhhhhhh
Q 005764 491 GDLNYRLNMMDT-----------EVR--------EL---------------VAQKRWD-------------KLINSDQLS 523 (678)
Q Consensus 491 GDLNYRI~l~~~-----------ev~--------~l---------------I~~~~~~-------------~LL~~DQL~ 523 (678)
|||||||+...- .+. ++ |+++.|+ .++.+|
T Consensus 224 GdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~d--- 300 (391)
T KOG1976|consen 224 GDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYD--- 300 (391)
T ss_pred cccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcc---
Confidence 999999985420 011 11 1122222 122222
Q ss_pred HHHhcCCcccC-ccccCcCCCCCcccccCCcccCCCCCCCCCcccCCCcccceeeecCc----------eeEEeecc--C
Q 005764 524 KELHSGHVFEG-WKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKG----------IKQLAYTR--A 590 (678)
Q Consensus 524 ~e~~~g~vF~g-f~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~s~KkR~PAWCDRIL~~g~~----------i~~l~Y~s--~ 590 (678)
+|. ..|.. ..|..|.|||||.|..+... ...-.+.|.||||||||+.... -+.+.|.. +
T Consensus 301 kEl---~nf~~kl~E~~i~FpPsypysed~~~-----~E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~ 372 (391)
T KOG1976|consen 301 KEL---ANFAFKLKEETIFFPPSYPYSEDDSG-----KEEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGE 372 (391)
T ss_pred hHH---HHHHHHHhheeecCCCCCCCCcCccc-----hHHHHhccChHhhhhhhcCccHHHHhhccccCcccceeccccc
Confidence 111 13443 77999999999999764321 0012479999999999998532 23477887 5
Q ss_pred CCCCCCCcCceeEEEE
Q 005764 591 EILLSDHRPVSSTFLV 606 (678)
Q Consensus 591 e~~~SDHRPV~A~F~v 606 (678)
|..+.|||||+..|.+
T Consensus 373 e~c~GdHKpVfl~~~i 388 (391)
T KOG1976|consen 373 EKCVGDHKPVFLHASI 388 (391)
T ss_pred ccccCCCcceEEEEee
Confidence 8899999999988865
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.46 E-value=2.7e-06 Score=89.75 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=52.4
Q ss_pred cccCCceEEEEEEEEcCEEEEEecccCCCCCC----ChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcc
Q 005764 418 GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQK----DGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDL 493 (678)
Q Consensus 418 G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k----~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDL 493 (678)
....+||.+.+++.+.+..+.|+|+||.+... ......|..++.+|.+.+.- ..+...+.||++|||
T Consensus 116 d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~---------~~~~~~~pvIl~GDf 186 (283)
T TIGR03395 116 DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDS---------KNIPKDETVLIGGDL 186 (283)
T ss_pred ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhh---------ccCCCCceEEEEeeC
Confidence 34678999999999999999999999998531 11246799999999775321 112334679999999
Q ss_pred ccc
Q 005764 494 NYR 496 (678)
Q Consensus 494 NYR 496 (678)
|..
T Consensus 187 N~~ 189 (283)
T TIGR03395 187 NVN 189 (283)
T ss_pred CCC
Confidence 984
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.34 E-value=5.4e-06 Score=86.09 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=76.3
Q ss_pred ceEEEEEEEE-cCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccccCCh
Q 005764 423 KGSVSVSMTL-FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMD 501 (678)
Q Consensus 423 KGaVaVr~~l-~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~ 501 (678)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|.+.+. .. ..++|++||||-.-....
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~-----~~--------~~p~Il~GDFN~~~~~~~ 199 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA-----HH--------SGPVILAGDFNTWSRKRM 199 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH-----hC--------CCCEEEEcccccCcccch
Confidence 7888888888 566799999999875322 3457788888876431 00 136999999995111111
Q ss_pred HHHHHHHHhcchhHHhhhhhhhHHHhcCCcccCccccCcCCCCCcccccCCcccCCCCCCCCCcccCCCcccceeeecCc
Q 005764 502 TEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKG 581 (678)
Q Consensus 502 ~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~s~KkR~PAWCDRIL~~g~~ 581 (678)
+..+.+. +. . |+.. .+|++.-++ ..+ ..| -|+||.+ +
T Consensus 200 ~~l~~~~---------~~------~-------~l~~--~~~~~~~~~----~~~---------~~~----ID~I~~~--~ 236 (263)
T PRK05421 200 NALKRFA---------RE------L-------GLKE--VRFTDDQRR----RAF---------GRP----LDFVFYR--G 236 (263)
T ss_pred HHHHHHH---------HH------c-------CCCc--cCcCCcccc----ccc---------CCC----cceEEEC--C
Confidence 1111111 10 0 1111 134332211 001 134 5999974 6
Q ss_pred eeEEeeccCCCCCCCCcCceeEEEEE
Q 005764 582 IKQLAYTRAEILLSDHRPVSSTFLVQ 607 (678)
Q Consensus 582 i~~l~Y~s~e~~~SDHRPV~A~F~v~ 607 (678)
+....+...+...|||+||.|.|.+.
T Consensus 237 ~~v~~~~v~~~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 237 LNVSKASVLVTRASDHNPLLVEFSLK 262 (263)
T ss_pred cEEEEEEcCCCCCCCccCEEEEEEec
Confidence 77777776677899999999999763
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.21 E-value=6.4e-07 Score=86.31 Aligned_cols=97 Identities=24% Similarity=0.308 Sum_probs=53.4
Q ss_pred eeEEEEEEEeccccccccceeEeEEeeccc---cccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHH
Q 005764 388 VGIYVSIWVRKRLRRHINNLKVSPVGVGLM---GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIR 464 (678)
Q Consensus 388 vGi~L~VfVr~~l~~~I~~v~vs~VgtGi~---G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIl 464 (678)
.+..++|+.|..+...+........+.+.. ....+++.+.+++. +..|+++++|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 456677888887665544433333233322 22456677777766 9999999999998532 2222222333
Q ss_pred hhcc-cCCCCCCCCCCCCCCCceEEEcCcccccccCC
Q 005764 465 RRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMM 500 (678)
Q Consensus 465 rr~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~ 500 (678)
..+. +.. ..+ ..++|++||||.+.+..
T Consensus 145 ~~~~~~~~----~~~-----~~~~iv~GDfN~~~~~~ 172 (249)
T PF03372_consen 145 ARIQKIYA----DNP-----NEPVIVMGDFNSRPDSR 172 (249)
T ss_dssp HHHHHHHH----TSS-----CCEEEEEEE-SS-BSSG
T ss_pred hhhhhccc----ccc-----cceEEEEeecccCCccc
Confidence 2211 100 000 01799999999988754
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.61 E-value=0.00042 Score=72.76 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=42.3
Q ss_pred ceEEEEEEEEc-CEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccc
Q 005764 423 KGSVSVSMTLF-QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (678)
Q Consensus 423 KGaVaVr~~l~-~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (678)
.|++-+.+... +..|-+||+||+=.+ +.|.+++..|+..+.+. +-.+++++||||
T Consensus 119 Rgal~a~~~~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~------------~~~p~vl~GDFN 174 (259)
T COG3568 119 RGALLAEIELPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLP------------ALNPTVLMGDFN 174 (259)
T ss_pred ceeEEEEEEcCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCc------------ccCceEEEccCC
Confidence 68888888884 668999999999553 56888999898743332 112799999999
No 12
>PRK11756 exonuclease III; Provisional
Probab=97.39 E-value=0.00072 Score=69.86 Aligned_cols=64 Identities=8% Similarity=0.205 Sum_probs=37.5
Q ss_pred ceEEEEEEEEcCEEEEEecccCCCCCCC---hhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccccc
Q 005764 423 KGSVSVSMTLFQSRLCLVCSHLTSGQKD---GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (678)
Q Consensus 423 KGaVaVr~~l~~ts~cFVn~HLaAg~k~---~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (678)
.+.+.+.+...+..|.|+|+|++.+... .....|...+..|...+.-. .....++|++||||--
T Consensus 89 ~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~----------~~~~~pvIl~GDfN~~ 155 (268)
T PRK11756 89 RRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETE----------LSPDNPLLIMGDMNIS 155 (268)
T ss_pred CCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHH----------hccCCCEEEEeecccC
Confidence 4677888877655699999999877531 12223434444443322100 0122479999999963
No 13
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.20 E-value=0.0036 Score=63.24 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=23.5
Q ss_pred EEEeeeeCCCCCCCCCCCc-ccccCCCCCCCEEEEeeeee
Q 005764 107 VTIGTWNVAGRQPYEDLDI-DDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl-~~WL~~~~~~DIYvlGfQEi 145 (678)
+.|.||||+|..... ..+ .+||... .||| |+|||+
T Consensus 1 lri~t~Nv~g~~~~~-~~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 1 MKIISWNVNGLRARL-HKLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred CEEEEEecccHHHHh-hccHHHHHHhc-CCCE--EEEEec
Confidence 358899999954322 234 7777554 4587 667998
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=97.07 E-value=0.0049 Score=78.10 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=42.7
Q ss_pred cCCceEEEEEEEEc----C-EEEEEecccCCCCCCChhHHHHHHhHHHHHhhcc--cCCCCCCCCCCCCCCCceEEEcCc
Q 005764 420 MGNKGSVSVSMTLF----Q-SRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR--FSSVFDTDQPQTIPSHDQIFWFGD 492 (678)
Q Consensus 420 lGNKGaVaVr~~l~----~-ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~--F~~~~~~~~p~~I~dhD~Vfw~GD 492 (678)
..+||.+.+.+.+. + ..+.|+|+||.+.... ..|.+++.+|.+-+. .... .....+....++|++||
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~---~~~~~~~~~~PvILaGD 203 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANV---YEQNNDGAEIPFVIAGD 203 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhh---cccccCCCCCCEEEEee
Confidence 35789999988884 2 5799999999987542 224455555544211 1000 00012234468999999
Q ss_pred ccc
Q 005764 493 LNY 495 (678)
Q Consensus 493 LNY 495 (678)
||-
T Consensus 204 FN~ 206 (1452)
T PTZ00297 204 FNI 206 (1452)
T ss_pred CCC
Confidence 994
No 15
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=96.24 E-value=0.027 Score=59.94 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=53.7
Q ss_pred CCCEEEEEeeece----eEEEEEEEeccccccccceeEeEEee-ccccccCCceEEEEEEEEcCE---EEEEecccCCCC
Q 005764 376 RPKYVRIVSKQMV----GIYVSIWVRKRLRRHINNLKVSPVGV-GLMGYMGNKGSVSVSMTLFQS---RLCLVCSHLTSG 447 (678)
Q Consensus 376 ~~~Y~~v~S~qmv----Gi~L~VfVr~~l~~~I~~v~vs~Vgt-Gi~G~lGNKGaVaVr~~l~~t---s~cFVn~HLaAg 447 (678)
+..|..|.|..+. |....++-|++....+..-...- +. |... .=.-=...++|+...+ .|.+|++|+.+.
T Consensus 77 ~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d-~~~~~~~-~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~ 154 (276)
T smart00476 77 PNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDD-GCECGND-VFSREPFVVKFSSPSTAVKEFVIVPLHTTPE 154 (276)
T ss_pred CCCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecC-CCCCccc-cccccceEEEEEeCCCCCccEEEEEecCChH
Confidence 4567777766542 46666666776544433221110 00 0000 0022355677777665 799999999885
Q ss_pred CCChhHHHHHHhHHH-HHhhcccCCCCCCCCCCCCCCCceEEEcCcccc
Q 005764 448 QKDGAEQRRNSDVSE-IRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (678)
Q Consensus 448 ~k~~~~~rRN~D~~e-Ilrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (678)
. ..++...+.+ ++.... .. ..+.||++||||-
T Consensus 155 ~----~~~e~~aL~~v~~~~~~-----------~~-~~~~villGDFNa 187 (276)
T smart00476 155 A----AVAEIDALYDVYLDVRQ-----------KW-GTEDVIFMGDFNA 187 (276)
T ss_pred H----HHHHHHHHHHHHHHHHH-----------hh-ccCCEEEEccCCC
Confidence 2 2333333222 222110 00 1357999999998
No 16
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=95.84 E-value=0.031 Score=65.25 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=43.2
Q ss_pred EEEEecccCCCCCCChhHHHHHHhHHHHHhhcc-cCCCCCCCCCCCCCCCceEEEcCcccccccCChHHHHHHHHhcc
Q 005764 436 RLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKR 512 (678)
Q Consensus 436 s~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~ 512 (678)
.||++|+||..+.... ..|..+...|++.+. |.. .. .-+||++||||- .+.+.+.++|.++.
T Consensus 418 ~l~VaNTHL~~~p~~~--dvRl~Q~~~Ll~~l~~~~~------~~----~~PvIlcGDFNS---~P~S~vy~lLt~G~ 480 (606)
T PLN03144 418 LLCVANTHIHANQELK--DVKLWQVHTLLKGLEKIAA------SA----DIPMLVCGDFNS---VPGSAPHCLLATGK 480 (606)
T ss_pred EEEEEEeeeccCCccc--hhHHHHHHHHHHHHHHHhh------cC----CCceEEeccCCC---CCCChhhhhhhcCC
Confidence 6999999997665432 346777777776542 110 00 126999999998 88888888887765
No 17
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=95.45 E-value=0.074 Score=58.38 Aligned_cols=200 Identities=20% Similarity=0.186 Sum_probs=110.2
Q ss_pred EEeeeceeEEEEEEEeccccccccce-----eEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCC---CChhH
Q 005764 382 IVSKQMVGIYVSIWVRKRLRRHINNL-----KVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQ---KDGAE 453 (678)
Q Consensus 382 v~S~qmvGi~L~VfVr~~l~~~I~~v-----~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~---k~~~~ 453 (678)
..|.-| |--|+||.|--+..-..+. .-..+=.| .+.|-||--..++.+.+..+.+.|+||-|-- ++.-.
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 356666 8888999887554322211 11112222 5678899888889999999999999998752 22334
Q ss_pred HHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccccccc-CChHHHH--HHHHhcchhHHhhhhhhhHHHhcCC
Q 005764 454 QRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN-MMDTEVR--ELVAQKRWDKLINSDQLSKELHSGH 530 (678)
Q Consensus 454 ~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~-l~~~ev~--~lI~~~~~~~LL~~DQL~~e~~~g~ 530 (678)
-.|-++..++.+-++- +-...|.||..||||-+=. ++..-.. .++ ..|..|. -||.-..-.++.
T Consensus 150 ~HR~~QAwdlaqfi~~----------t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h-~~q~e~~~~r~s 216 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRA----------TRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLH-LDQCESDSFRLS 216 (422)
T ss_pred hHHHHHHHHHHHHHHH----------HhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhc-hhhhcCcccccc
Confidence 5788877777653221 1124579999999997542 3322111 122 2344332 233322222222
Q ss_pred cccCccccCcCC--CCCccc-ccCCcccCCCCCCCCCcccCCCcccceeeecCc--eeEEeec----c---CCCCCCCCc
Q 005764 531 VFEGWKEGVINF--PPTYKY-EINSDRYVGENPKEGEKKRSPAWCDRILWLGKG--IKQLAYT----R---AEILLSDHR 598 (678)
Q Consensus 531 vF~gf~Eg~I~F--pPTYKy-~~~Sd~Y~~~~~k~s~KkR~PAWCDRIL~~g~~--i~~l~Y~----s---~e~~~SDHR 598 (678)
-|.+..||.-+= .-||.- .++.+... -+| .|.||+++.. ++...|. + .+..+|||-
T Consensus 217 ~~~~l~~g~tcd~~~N~y~~aqk~~ddp~--------~~R----iDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH~ 284 (422)
T KOG3873|consen 217 EDKELVEGNTCDSPLNCYTSAQKREDDPL--------GKR----IDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDHE 284 (422)
T ss_pred hhhhhhcCCcccCcchhhhHHHhCCCCcc--------cee----eeEEEEcCcceEEEeeeEEecCCCCCCCCCCccchh
Confidence 244444553111 112220 01111111 266 7999999753 2333332 2 257789999
Q ss_pred CceeEEEEEEE
Q 005764 599 PVSSTFLVQVE 609 (678)
Q Consensus 599 PV~A~F~v~v~ 609 (678)
.+.|++.+.-.
T Consensus 285 Al~a~L~I~~~ 295 (422)
T KOG3873|consen 285 ALMATLKIFKQ 295 (422)
T ss_pred hheeEEEeecC
Confidence 99999987643
No 18
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=0.081 Score=57.09 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=73.4
Q ss_pred CCceEEEEEEEE-cCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccccC
Q 005764 421 GNKGSVSVSMTL-FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNM 499 (678)
Q Consensus 421 GNKGaVaVr~~l-~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l 499 (678)
+-||++.+.... +++.+..+|.|..-..-. ....| ++..++.+.+. +.. -.||++||||- .
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~-~~~~~-~ql~~l~~~i~-----~~~--------gpvIlaGDfNa---~ 234 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVG-TDPQR-AQLLELGDQIA-----GHS--------GPVILAGDFNA---P 234 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCC-ccHHH-HHHHHHHHHHH-----cCC--------CCeEEeecCCC---c
Confidence 468887777665 578999999999843322 22344 66666655421 111 26999999997 3
Q ss_pred ChHHH-HHHHHhcchhHHhhhhhhhHHHhcCCcccCccccCcCCCCCcccccCCcccCCCCCCCCCcccCCCc-ccceee
Q 005764 500 MDTEV-RELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAW-CDRILW 577 (678)
Q Consensus 500 ~~~ev-~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~s~KkR~PAW-CDRIL~ 577 (678)
+-.++ +.+. .|...+.. .++| -.| ..|-|+ +-.|.+.| .|.|++
T Consensus 235 pWS~~~~R~~------~l~~~~~~---~~aG-----~~~--~~~~p~------------------~~~r~~g~PIDhvf~ 280 (309)
T COG3021 235 PWSRTAKRMA------ALGGLRAA---PRAG-----LWE--VRFTPD------------------ERRRAFGLPIDHVFY 280 (309)
T ss_pred chhHHHHHHH------Hhcccccc---hhcc-----CCc--cccCHH------------------HHhhccCCCcceeee
Confidence 33322 2221 12111110 1111 111 112222 01223334 799999
Q ss_pred ecCceeEEeeccCCCCCCCCcCceeEEEE
Q 005764 578 LGKGIKQLAYTRAEILLSDHRPVSSTFLV 606 (678)
Q Consensus 578 ~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v 606 (678)
+| +....=.+.+...|||+||.+.|+.
T Consensus 281 rg--l~~~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 281 RG--LTVMKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred cC--cchhhhhhccccCCCCCceEEEEEe
Confidence 98 4444444556699999999999974
No 19
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=95.27 E-value=0.085 Score=54.07 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=23.7
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
+.|.||||+|..... ..+..||... .||| |+|||+
T Consensus 1 mri~t~Ni~g~~~~~-~~~~~~l~~~-~~DI--i~LQE~ 35 (254)
T TIGR00195 1 MKIISWNVNGLRARL-HKGLAWLKEN-QPDV--LCLQET 35 (254)
T ss_pred CEEEEEEcCcHHHhH-HHHHHHHHhc-CCCE--EEEEec
Confidence 358999999954322 2367888654 4587 558996
No 20
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=95.13 E-value=0.21 Score=52.16 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=26.1
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 108 ~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
.+.||||||..-.....+.+||... .||| |+|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~~-~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNSV-DADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHhc-CCCE--EEEEee
Confidence 5899999996544333588999654 4587 788999
No 21
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=93.75 E-value=0.071 Score=47.44 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=17.4
Q ss_pred CCcccceeeecCceeE-EeeccCCCCCCCCcCce
Q 005764 569 PAWCDRILWLGKGIKQ-LAYTRAEILLSDHRPVS 601 (678)
Q Consensus 569 PAWCDRIL~~g~~i~~-l~Y~s~e~~~SDHRPV~ 601 (678)
.+--|+||....-... ..-.......|||+||+
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 3448999987643322 11112467889999985
No 22
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=93.64 E-value=0.21 Score=53.27 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=37.1
Q ss_pred CCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccc
Q 005764 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (678)
Q Consensus 421 GNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (678)
.....+++++ .+ +.|.+.||.+... ..|.+.+..|..- |.+ ..| +..++++||||=
T Consensus 140 ~~Rpilgi~i--~~--~~ffstH~~a~~~----~da~aiV~~I~~~--f~~----~~~-----~~pw~I~GDFNr 195 (271)
T PRK15251 140 ASRPIIGIRI--GN--DVFFSIHALANGG----TDAGAIVRAVHNF--FRP----NMR-----HINWMIAGDFNR 195 (271)
T ss_pred cccceEEEEe--cC--eEEEEeeecCCCC----ccHHHHHHHHHHH--Hhh----ccC-----CCCEEEeccCCC
Confidence 3566777765 33 7899999999832 2367777777664 210 111 347999999994
No 23
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=92.46 E-value=0.05 Score=56.75 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=31.7
Q ss_pred EEEEEEEEcCEEEEEecccCCCCCCCh-hHHHH---HHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccc
Q 005764 425 SVSVSMTLFQSRLCLVCSHLTSGQKDG-AEQRR---NSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (678)
Q Consensus 425 aVaVr~~l~~ts~cFVn~HLaAg~k~~-~~~rR---N~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (678)
+-.|...+. .|.++|+..+.+.... ....| ..++.+.++.+. ...++||+||||=
T Consensus 89 GR~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l~--------------~~~~~Ii~GD~Nv 147 (250)
T PRK13911 89 GRVITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALE--------------LKKPVIVCGDLNV 147 (250)
T ss_pred CCEEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhcc--------------cCCCEEEEccccC
Confidence 334455554 4899999999986431 22223 233444444310 1237999999995
No 24
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=89.54 E-value=1.1 Score=48.05 Aligned_cols=62 Identities=21% Similarity=0.357 Sum_probs=40.8
Q ss_pred EEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccc
Q 005764 426 VSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (678)
Q Consensus 426 VaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (678)
..+...+.+..+||.++||.+-... ..+|.+++.+.+.+++=- + . ++..-.||+-||+|.|=
T Consensus 195 ~I~Ev~v~G~Kl~l~tsHLEStr~h--~P~r~~qF~~~~~k~~Ea-I--e-----~lPnA~ViFGGD~NlrD 256 (349)
T KOG2756|consen 195 LIVEVNVSGNKLCLMTSHLESTRGH--APERMNQFKMVLKKMQEA-I--E-----SLPNATVIFGGDTNLRD 256 (349)
T ss_pred EEEEEeecCceEEEEeccccCCCCC--ChHHHHHHHHHHHHHHHH-H--H-----hCCCceEEEcCcccchh
Confidence 3455667788899999999997642 356777776655543210 0 0 11223699999999864
No 25
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=87.14 E-value=0.11 Score=55.15 Aligned_cols=34 Identities=35% Similarity=0.715 Sum_probs=25.0
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 108 ~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
.+-||||||.--.-.. +-+||....| || |++||+
T Consensus 2 kI~SwNVNgiRar~~~-~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 2 KIASWNVNGLRARLKK-LLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eeEEEehhhHHHHHHH-HHHHHHHhCC-CE--EEEEec
Confidence 4789999995332222 7899976555 86 899999
No 26
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=80.34 E-value=2.5 Score=48.42 Aligned_cols=94 Identities=22% Similarity=0.201 Sum_probs=58.4
Q ss_pred EEEEEeccccccccceeEe--EEeeccccccCCceEEEEEEEEcCE---EEEEecccCCCCCCChhHHHHHHhHHHHHhh
Q 005764 392 VSIWVRKRLRRHINNLKVS--PVGVGLMGYMGNKGSVSVSMTLFQS---RLCLVCSHLTSGQKDGAEQRRNSDVSEIRRR 466 (678)
Q Consensus 392 L~VfVr~~l~~~I~~v~vs--~VgtGi~G~lGNKGaVaVr~~l~~t---s~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr 466 (678)
++|+-++..-+.+.+-.+. -.+.|++..-.-++.|+.+|++-+. -++.+|+||--+...+++ |-+++.-|+..
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~v--rL~Q~~iiL~~ 281 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDV--RLAQVYIILAE 281 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccch--hhHHHHHHHHH
Confidence 3444455544444333332 3566665543335667777766555 799999999998766554 77788888765
Q ss_pred cc-cCCCCCCCCCCCCCCCceEEEcCcccc
Q 005764 467 TR-FSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (678)
Q Consensus 467 ~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (678)
+. |.... ..|=+||++||||-
T Consensus 282 ~~~~~~~~--------~~~~pi~l~GDfNt 303 (495)
T KOG2338|consen 282 LEKMSKSS--------KSHWPIFLCGDFNT 303 (495)
T ss_pred HHHHHhhc--------ccCCCeEEecCCCC
Confidence 42 21110 03558999999996
No 27
>PRK11756 exonuclease III; Provisional
Probab=77.54 E-value=0.59 Score=48.39 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=23.0
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 108 ~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
.|.||||+|..-.- ..|..||... .||| |+|||+
T Consensus 2 ri~T~Nv~g~~~~~-~~i~~~i~~~-~pDI--i~LQE~ 35 (268)
T PRK11756 2 KFVSFNINGLRARP-HQLEAIIEKH-QPDV--IGLQET 35 (268)
T ss_pred EEEEEEcCCHHHHH-HHHHHHHHhc-CCCE--EEEEec
Confidence 47799999953211 1267888554 4688 669998
No 28
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.75 E-value=1.6 Score=44.15 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=30.4
Q ss_pred EEEEEecccCCCCCCChh--HHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccc
Q 005764 435 SRLCLVCSHLTSGQKDGA--EQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (678)
Q Consensus 435 ts~cFVn~HLaAg~k~~~--~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (678)
..|.++|+|++++...+. ...|...+..+.+.+. .. +.....+|++||||--.
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~--------~~~~~~~Il~GDFN~~~ 154 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE--KE--------LDAGKPVIICGDMNVAH 154 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH--HH--------HhcCCcEEEEeecccCC
Confidence 358899999988763221 2345545544443210 00 01224799999999754
No 29
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=66.76 E-value=1.9 Score=44.24 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=28.6
Q ss_pred EEEEecccCCCCCCCh--hHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccccccc
Q 005764 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (678)
Q Consensus 436 s~cFVn~HLaAg~k~~--~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (678)
.|.++|+|+.++.... ....|..-+..+...+. ... ....++|++||||-...
T Consensus 98 ~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~~--------~~~~pvIi~GDfN~~~~ 152 (254)
T TIGR00195 98 SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLE--KLV--------DKDKPVLICGDMNIAPT 152 (254)
T ss_pred CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHH--HHH--------hcCCcEEEEeecccCCC
Confidence 4889999999853221 22334444444433211 000 01136999999996443
No 30
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=61.84 E-value=6.3 Score=42.25 Aligned_cols=40 Identities=30% Similarity=0.596 Sum_probs=27.3
Q ss_pred EEEeeeeCCCCCCCCCCCccccc-------CCCCCCCEEEEeeeeeeeCCCC
Q 005764 107 VTIGTWNVAGRQPYEDLDIDDWL-------CTQEPADIYIFGFQEVVPLNAG 151 (678)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL-------~~~~~~DIYvlGfQEiV~Lna~ 151 (678)
..|||||+.|.+-.++ +.|= ..++++|| |-|||.=.|.+.
T Consensus 25 ~~~~twn~qg~s~~~~---~kw~~~v~~l~~~~~~~DI--la~QEags~p~~ 71 (271)
T PRK15251 25 YKVATWNLQGSSASTE---SKWNVNVRQLLSGENPADI--LMVQEAGSLPSS 71 (271)
T ss_pred ceEEEeecCCCCCCCh---hhhhhhHHHHhcCCCCCCE--EEEEecCCCccc
Confidence 4589999999755544 4564 34567887 678999544444
No 31
>PRK05421 hypothetical protein; Provisional
Probab=50.72 E-value=8.5 Score=40.24 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=21.8
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
.+.|-||||.+..-......-.++ ...||| |+|||+
T Consensus 43 ~lri~t~NI~~~~~~~~~~~l~~l--~~~~Di--I~LQEv 78 (263)
T PRK05421 43 RLRLLVWNIYKQQRAGWLSVLKNL--GKDADL--VLLQEA 78 (263)
T ss_pred ceeEEEEEccccccccHHHHHHHh--ccCCCE--EEEEec
Confidence 367889999985532221122334 344565 789999
No 32
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=26.68 E-value=14 Score=26.24 Aligned_cols=16 Identities=38% Similarity=0.764 Sum_probs=12.9
Q ss_pred HHHhhhccCCCCcccc
Q 005764 17 VMKKWLNIKPKVYDFS 32 (678)
Q Consensus 17 v~rKwlni~~~~~df~ 32 (678)
+..|||||-++-++|-
T Consensus 6 ~~s~WfniD~rIsf~F 21 (26)
T TIGR02616 6 VLSKWFNIDNRISFFF 21 (26)
T ss_pred cCCceEEcchhheecc
Confidence 4679999999887763
No 33
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=24.17 E-value=15 Score=24.99 Aligned_cols=14 Identities=50% Similarity=0.942 Sum_probs=10.5
Q ss_pred HHHhhhccCCCCcc
Q 005764 17 VMKKWLNIKPKVYD 30 (678)
Q Consensus 17 v~rKwlni~~~~~d 30 (678)
|-.|||||..|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 34699999887654
No 34
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.64 E-value=33 Score=38.81 Aligned_cols=25 Identities=36% Similarity=0.865 Sum_probs=18.0
Q ss_pred CCCceEEEcCcccccccCChHHHHHHHHhcchhH
Q 005764 482 PSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDK 515 (678)
Q Consensus 482 ~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~~~~ 515 (678)
...+.||+=|||||| +|+.-..|+.
T Consensus 350 ~~S~LvIFKGDLNYR---------KL~GD~~W~~ 374 (434)
T KOG3870|consen 350 QKSSLVIFKGDLNYR---------KLTGDRKWDP 374 (434)
T ss_pred hhCcEEEEeccccHH---------HHhccCCCCC
Confidence 346899999999994 5555555653
No 35
>PRK09806 tryptophanase leader peptide; Provisional
Probab=20.82 E-value=19 Score=25.01 Aligned_cols=15 Identities=47% Similarity=0.877 Sum_probs=11.0
Q ss_pred HHHhhhccCCCCccc
Q 005764 17 VMKKWLNIKPKVYDF 31 (678)
Q Consensus 17 v~rKwlni~~~~~df 31 (678)
|-.|||||..|--|.
T Consensus 8 vtskwfnidnkivdh 22 (26)
T PRK09806 8 VTSKWFNIDNKIVDH 22 (26)
T ss_pred EeeeEEeccCeeecc
Confidence 346999998876553
Done!