Query 005764
Match_columns 678
No_of_seqs 402 out of 1179
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 06:50:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 3.2E-90 1.1E-94 726.3 32.9 229 378-613 78-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 3.5E-85 1.2E-89 689.1 30.5 229 378-609 80-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 2.5E-83 8.6E-88 682.9 33.1 324 78-619 2-328 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 2.3E-77 7.7E-82 639.4 31.3 246 378-635 86-344 (357)
5 2imq_X Salivary nitrophorin; f 100.0 7.6E-63 2.6E-67 508.9 24.4 205 378-608 72-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.8 4.7E-08 1.6E-12 93.9 14.8 66 418-496 97-162 (256)
7 3teb_A Endonuclease/exonucleas 98.7 1.7E-07 5.8E-12 91.6 12.8 62 420-497 120-181 (266)
8 1zwx_A SMCL, sphingomyelinase- 98.6 1.9E-07 6.4E-12 93.8 11.7 70 420-498 128-201 (301)
9 4fva_A 5'-tyrosyl-DNA phosphod 98.6 7.5E-07 2.6E-11 85.7 14.0 67 420-496 103-169 (256)
10 4f1h_A Tyrosyl-DNA phosphodies 98.5 8.6E-07 3E-11 83.4 11.8 61 422-495 95-155 (250)
11 3l1w_A Uncharacterized protein 98.5 8.2E-07 2.8E-11 87.1 11.7 137 420-607 107-252 (257)
12 1ako_A Exonuclease III; AP-end 98.4 2.2E-06 7.5E-11 83.8 12.7 68 421-498 87-157 (268)
13 3i41_A Beta-hemolysin; beta to 98.4 4.6E-07 1.6E-11 93.6 8.2 70 419-497 146-219 (317)
14 3g6s_A Putative endonuclease/e 98.4 1.4E-06 4.6E-11 86.2 10.7 139 420-607 113-261 (267)
15 4gew_A 5'-tyrosyl-DNA phosphod 98.3 3.8E-06 1.3E-10 89.2 14.0 66 421-496 210-275 (362)
16 2ddr_A Sphingomyelin phosphodi 98.3 2.1E-06 7.3E-11 86.1 10.8 69 420-497 128-200 (306)
17 3mpr_A Putative endonuclease/e 98.1 1.3E-05 4.5E-10 81.3 10.3 62 421-495 118-181 (298)
18 1vyb_A ORF2 contains A reverse 97.6 0.00045 1.5E-08 65.9 12.0 54 425-497 97-150 (238)
19 2jc4_A Exodeoxyribonuclease II 97.5 0.00033 1.1E-08 67.8 9.6 53 436-498 98-152 (256)
20 1wdu_A TRAS1 ORF2P; four-layer 97.3 0.00036 1.2E-08 68.2 7.9 57 422-496 102-158 (245)
21 2o3h_A DNA-(apurinic or apyrim 97.2 0.00041 1.4E-08 69.0 6.4 34 572-605 249-284 (285)
22 2jc5_A Exodeoxyribonuclease; h 97.1 0.0003 1E-08 68.2 4.4 36 572-607 220-257 (259)
23 2j63_A AP-endonuclease; base e 97.1 0.0027 9.1E-08 70.2 11.9 35 572-606 430-466 (467)
24 4b8c_D Glucose-repressible alc 96.9 0.0002 6.9E-09 82.5 1.0 73 434-511 546-619 (727)
25 1hd7_A DNA-(apurinic or apyrim 96.8 0.0011 3.6E-08 68.1 5.3 37 106-145 61-97 (318)
26 2a40_B Deoxyribonuclease-1; WA 96.7 0.00046 1.6E-08 68.5 1.7 60 423-497 111-173 (260)
27 3g91_A MTH0212, exodeoxyribonu 96.1 0.0033 1.1E-07 62.0 3.8 36 107-145 4-39 (265)
28 2voa_A AF_EXO, XTHA, exodeoxyr 96.1 0.013 4.4E-07 56.8 7.9 51 436-496 98-150 (257)
29 1sr4_B CDT B, cytolethal diste 95.6 0.032 1.1E-06 57.5 8.9 60 422-495 121-180 (261)
30 3ngq_A CCR4-NOT transcription 95.5 0.016 5.6E-07 62.7 6.5 74 434-512 194-270 (398)
31 2ei9_A Non-LTR retrotransposon 94.5 0.092 3.1E-06 52.2 8.3 36 106-145 7-42 (240)
32 4fva_A 5'-tyrosyl-DNA phosphod 90.0 0.048 1.6E-06 51.9 -0.6 40 103-145 10-53 (256)
33 4f1h_A Tyrosyl-DNA phosphodies 85.8 0.13 4.5E-06 47.7 -0.4 37 106-145 3-43 (250)
34 4gz1_A Tyrosyl-DNA phosphodies 82.3 0.28 9.5E-06 46.5 0.2 35 572-606 211-254 (256)
35 4gew_A 5'-tyrosyl-DNA phosphod 80.0 0.36 1.2E-05 51.0 0.1 40 103-145 116-159 (362)
36 2ei9_A Non-LTR retrotransposon 76.2 0.29 1E-05 48.5 -1.9 56 422-497 77-132 (240)
37 2jc5_A Exodeoxyribonuclease; h 76.1 0.28 9.6E-06 47.1 -2.0 36 107-145 2-37 (259)
38 1ako_A Exonuclease III; AP-end 74.7 0.31 1.1E-05 47.1 -2.1 35 107-145 1-35 (268)
39 3g91_A MTH0212, exodeoxyribonu 73.8 0.25 8.5E-06 48.4 -3.1 36 572-607 221-258 (265)
40 1vyb_A ORF2 contains A reverse 70.1 0.49 1.7E-05 44.7 -1.9 37 106-145 7-44 (238)
41 2voa_A AF_EXO, XTHA, exodeoxyr 68.6 0.62 2.1E-05 44.9 -1.6 35 107-145 2-36 (257)
42 2o3h_A DNA-(apurinic or apyrim 66.7 0.5 1.7E-05 46.5 -2.7 37 106-145 28-64 (285)
43 1hd7_A DNA-(apurinic or apyrim 65.3 0.57 1.9E-05 47.7 -2.7 52 435-497 163-215 (318)
44 2jc4_A Exodeoxyribonuclease II 61.4 0.71 2.4E-05 44.2 -2.7 35 107-145 1-35 (256)
45 2j63_A AP-endonuclease; base e 61.4 0.7 2.4E-05 50.9 -3.1 37 106-145 149-188 (467)
46 3g6s_A Putative endonuclease/e 61.3 3.5 0.00012 40.0 2.3 36 106-145 3-47 (267)
47 3l1w_A Uncharacterized protein 59.7 1.5 5.1E-05 42.3 -0.8 36 107-145 1-44 (257)
48 2f1n_A CDT B, cytolethal diste 58.2 5.4 0.00019 41.1 3.1 59 422-495 130-188 (262)
49 3teb_A Endonuclease/exonucleas 57.9 1.8 6.3E-05 41.5 -0.5 33 572-605 228-265 (266)
50 2ddr_A Sphingomyelin phosphodi 55.8 8 0.00027 38.1 3.8 15 592-606 291-305 (306)
51 1wdu_A TRAS1 ORF2P; four-layer 55.5 0.99 3.4E-05 43.7 -2.8 36 106-145 19-54 (245)
52 2f1n_A CDT B, cytolethal diste 52.0 3.3 0.00011 42.7 0.3 39 106-146 15-57 (262)
53 3mpr_A Putative endonuclease/e 51.3 2.1 7.1E-05 42.9 -1.3 39 104-145 4-52 (298)
54 1sr4_B CDT B, cytolethal diste 49.0 5.7 0.0002 40.8 1.5 39 107-148 5-48 (261)
55 1zwx_A SMCL, sphingomyelinase- 44.0 10 0.00035 37.3 2.4 15 592-606 286-300 (301)
56 3i41_A Beta-hemolysin; beta to 32.5 5.8 0.0002 40.4 -1.6 37 106-145 29-74 (317)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=3.2e-90 Score=726.33 Aligned_cols=229 Identities=41% Similarity=0.751 Sum_probs=216.7
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHH
Q 005764 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (678)
Q Consensus 378 ~Y~~v~S~qmvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN 457 (678)
.|++|+++|||||+|+||||+++.++|++|++++||||+||++||||||+|||.+++|+|||||||||||++ +.++||
T Consensus 78 ~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~--~~~~Rn 155 (313)
T 3mtc_A 78 KYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIE--EYERRN 155 (313)
T ss_dssp CEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHH
T ss_pred CEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCch--HHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999999975 478999
Q ss_pred HhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccccccc-CChHHHHHHHHhcchhHHhhhhhhhHHHhcCCcccCcc
Q 005764 458 SDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN-MMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWK 536 (678)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~-l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~ 536 (678)
+|+.+|++++.|........|.+|.+||+|||||||||||+ ++.++++++|++++|+.||++|||+.|+++|++|.||.
T Consensus 156 ~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~ 235 (313)
T 3mtc_A 156 QDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFT 235 (313)
T ss_dssp HHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCB
T ss_pred HHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcc
Confidence 99999999999975433345678999999999999999996 88999999999999999999999999999999999999
Q ss_pred ccCcCCCCCcccccCCcccCCCCCCCCCcccCCCcccceeeecCceeEEeecc-CCCCCCCCcCceeEEEEEEEeech
Q 005764 537 EGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTR-AEILLSDHRPVSSTFLVQVEVLDH 613 (678)
Q Consensus 537 Eg~I~FpPTYKy~~~Sd~Y~~~~~k~s~KkR~PAWCDRIL~~g~~i~~l~Y~s-~e~~~SDHRPV~A~F~v~v~vv~~ 613 (678)
||+|+|||||||+.|++.|++ ++|+|+|||||||||++++++++.|.+ .++++||||||+|.|.++++|+-+
T Consensus 236 E~~I~F~PTYKyd~~s~~ydt-----s~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 236 EGELTFQPTYKYDTGSDDWDT-----SEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVAH 308 (313)
T ss_dssp CCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEECC
T ss_pred cCCcCcCCCccCcCCCccccc-----ccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEeec
Confidence 999999999999999999984 789999999999999999999999998 579999999999999999998864
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=3.5e-85 Score=689.10 Aligned_cols=229 Identities=34% Similarity=0.577 Sum_probs=196.8
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHH
Q 005764 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (678)
Q Consensus 378 ~Y~~v~S~qmvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN 457 (678)
.|++|+++|||||+|+||||+++.++|++|++++||||+||++||||||+|+|.+++|+|||||||||||++ ++++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~--~~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNE--KTARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTT--CHHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCch--HHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999999999999999986 478999
Q ss_pred HhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccccCChHHHHHHHHhcchhHHhhhhhhhHHHhcCCcccCccc
Q 005764 458 SDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKE 537 (678)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~E 537 (678)
+|+.+|++++.|.... ......+.+||||||||||||||+++.++++++|++++|+.||++|||+.|+++|++|.||+|
T Consensus 158 ~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E 236 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSE 236 (316)
T ss_dssp HHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBC
T ss_pred HHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCccccccc
Confidence 9999999999996321 111233567999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCcccccCCc-ccCCCCC-CCCCcccCCCcccceeeecC---ceeEEeecc-CCCCCCCCcCceeEEEEEEE
Q 005764 538 GVINFPPTYKYEINSD-RYVGENP-KEGEKKRSPAWCDRILWLGK---GIKQLAYTR-AEILLSDHRPVSSTFLVQVE 609 (678)
Q Consensus 538 g~I~FpPTYKy~~~Sd-~Y~~~~~-k~s~KkR~PAWCDRIL~~g~---~i~~l~Y~s-~e~~~SDHRPV~A~F~v~v~ 609 (678)
|+|+|||||||+.|++ .|+++.. .+++|+|+|||||||||++. .++++.|.+ .++++||||||+|.|.+.|.
T Consensus 237 ~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 237 EEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 9999999999999995 6766433 35778999999999999975 589999997 69999999999999999874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=2.5e-83 Score=682.93 Aligned_cols=324 Identities=34% Similarity=0.622 Sum_probs=287.0
Q ss_pred CCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC--CCCCEEEEeeeeeeeCCCCCcc
Q 005764 78 TPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQ--EPADIYIFGFQEVVPLNAGNVL 154 (678)
Q Consensus 78 ~~~~~~~~-~~~r~~~e~~r~~y~~~~~~ri~vgTwNV~G~~p~~~ldl~~WL~~~--~~~DIYvlGfQEiV~Lna~nvl 154 (678)
||+++++. +|++|.. +|+..++++||||||||||+.| +.||.+||.+. .+||||||||||||+|++++++
T Consensus 2 ~p~~~~~~~~l~~r~~-----e~~~~~~~~i~v~TwNv~g~~~--~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~ 74 (347)
T 1i9z_A 2 DPIHEYVNHELRKREN-----EFSEHKNVKIFVASYNLNGCSA--TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVI 74 (347)
T ss_dssp CHHHHHHHHHHHHTGG-----GTEEEEEEEEEEEEEECTTCCC--CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----
T ss_pred CchHHHHHHHHHHHHH-----hcCCCCCcEEEEEeEecCCCCC--chhHHHHhccccCCCCCEEEEEeEEeecCchhhhc
Confidence 68889987 7888766 4999999999999999999888 45699999873 6899999999999999999998
Q ss_pred ccCCCCChhHHHHHHHHHhccCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCCCc
Q 005764 155 GAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNVGR 234 (678)
Q Consensus 155 ~~ed~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~ 234 (678)
+. |+.+...|+.+|+++|+....
T Consensus 75 ~~-~~~~~~~w~~~i~~~L~~~~~-------------------------------------------------------- 97 (347)
T 1i9z_A 75 SA-DPAKRREWESCVKRLLNGKCT-------------------------------------------------------- 97 (347)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHTCC--------------------------------------------------------
T ss_pred cc-CchhHHHHHHHHHHHHhhccc--------------------------------------------------------
Confidence 75 666688999999999874210
Q ss_pred ccchhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCcccccccCCCc
Q 005764 235 EDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGNGL 314 (678)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~~~~~ 314 (678)
T Consensus 98 -------------------------------------------------------------------------------- 97 (347)
T 1i9z_A 98 -------------------------------------------------------------------------------- 97 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhccCCcccccccccCCCCCCcccccccCCCchhhcchHHHHhhccCCCCEEEEEeeeceeEEEEE
Q 005764 315 KRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYVSI 394 (678)
Q Consensus 315 ~~~~~s~~~~~s~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~S~qmvGi~L~V 394 (678)
++..|++++++||+|++|+|
T Consensus 98 ------------------------------------------------------------~~~~Y~~v~s~~l~g~~L~V 117 (347)
T 1i9z_A 98 ------------------------------------------------------------SGPGYVQLRSGQLVGTALMI 117 (347)
T ss_dssp ------------------------------------------------------------SSCCEEEEEEEEETTEEEEE
T ss_pred ------------------------------------------------------------CCCceeEEEEeeccceEEEE
Confidence 01369999999999999999
Q ss_pred EEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCC
Q 005764 395 WVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFD 474 (678)
Q Consensus 395 fVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~ 474 (678)
|+|.++.++|++|++++|+||++|++||||+|+|+|.+++++||||||||+||+.+ .++||+|+.+|++++.|..
T Consensus 118 fvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~--- 192 (347)
T 1i9z_A 118 FCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRR--- 192 (347)
T ss_dssp EEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGG---
T ss_pred EEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCc---
Confidence 99999999999999999999999999999999999999999999999999999864 5679999999999999863
Q ss_pred CCCCCCCCCCceEEEcCcccccccCChHHHHHHHHhcchhHHhhhhhhhHHHhcCCcccCccccCcCCCCCcccccCCcc
Q 005764 475 TDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINSDR 554 (678)
Q Consensus 475 ~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~ 554 (678)
+..|.+||++||+|||||||+++.++++++|++++|+.||++|||+.++++|++|.||.|++|+|+|||||+.+++.
T Consensus 193 ---~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~ 269 (347)
T 1i9z_A 193 ---GRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDI 269 (347)
T ss_dssp ---GCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSC
T ss_pred ---ccccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCcc
Confidence 24688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccCCCcccceeeecCceeEEeeccCCCCCCCCcCceeEEEEEEEeechhhhhhh
Q 005764 555 YVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKRA 619 (678)
Q Consensus 555 Y~~~~~k~s~KkR~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~v~vv~~~kl~~~ 619 (678)
|++ ++|+|+|||||||||++ +++++.|.+.++++||||||+|.|.+.|+++++++.++.
T Consensus 270 yd~-----s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~ 328 (347)
T 1i9z_A 270 YDT-----SDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKIL 328 (347)
T ss_dssp BCC-----STTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHH
T ss_pred ccc-----cccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHH
Confidence 984 78999999999999998 899999999889999999999999999999998876543
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.3e-77 Score=639.43 Aligned_cols=246 Identities=28% Similarity=0.516 Sum_probs=216.4
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHH
Q 005764 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (678)
Q Consensus 378 ~Y~~v~S~qmvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN 457 (678)
.|+++.+.+|+|++|+||+|.++.++|++|++++|+||+||++||||+|+|+|.+++|+||||||||+||++ +.++||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~--~~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDG--KVAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTT--CHHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCc--hHHHHH
Confidence 588899999999999999999999999999999999999999999999999999999999999999999975 478999
Q ss_pred HhHHHHHhhcccCCCCCCC------CCCCCCCCceEEEcCcccccccCChHHHHHHHH---hcchhHHhhhhhhhHHHhc
Q 005764 458 SDVSEIRRRTRFSSVFDTD------QPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVA---QKRWDKLINSDQLSKELHS 528 (678)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~------~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~---~~~~~~LL~~DQL~~e~~~ 528 (678)
+|+.+|++++.|+...... ....+.+||+|||+|||||||++++++++++|. .++|+.|+++|||+.|+++
T Consensus 164 ~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~ 243 (357)
T 2xsw_A 164 LDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRK 243 (357)
T ss_dssp HHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhc
Confidence 9999999999996432111 112345799999999999999999999999996 5789999999999999999
Q ss_pred CCcccCccccCcCCCCCcccccCCcccCCCCCCCCCcccCCCcccceeeecC---ceeEEeecc-CCCCCCCCcCceeEE
Q 005764 529 GHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGK---GIKQLAYTR-AEILLSDHRPVSSTF 604 (678)
Q Consensus 529 g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~s~KkR~PAWCDRIL~~g~---~i~~l~Y~s-~e~~~SDHRPV~A~F 604 (678)
|++|.||.|++|+|||||||+.|++.|++ ++|+|+|||||||||++. +++++.|.+ .++++||||||+|.|
T Consensus 244 g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt-----s~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f 318 (357)
T 2xsw_A 244 GSIFKGFQEPDIHFLPSYKFDIGKDTYDS-----TSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLF 318 (357)
T ss_dssp TSSSTTCBCCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEE
T ss_pred cccccCccccCCCCCCCccccCCCccccc-----cCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEE
Confidence 99999999999999999999999999984 789999999999999964 799999999 589999999999999
Q ss_pred EEEEEeechhhhhhhcccCcceecCccccCc
Q 005764 605 LVQVEVLDHRKLKRALNVSSAVVHPDIFLDE 635 (678)
Q Consensus 605 ~v~v~vv~~~kl~~~l~~~~a~v~~e~~~~~ 635 (678)
.+.|+...+ .+......+..+.+++.
T Consensus 319 ~v~v~~~~~-----~ipl~~~~f~~~~~~~~ 344 (357)
T 2xsw_A 319 RVKVRPGRD-----NIPLAAGKFDRELYLLG 344 (357)
T ss_dssp EEECCCCCS-----CSCBCSSCCCHHHHHHH
T ss_pred EEEEecCCc-----cccccccccCHHHHHHH
Confidence 999875443 23334455666666554
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=7.6e-63 Score=508.86 Aligned_cols=205 Identities=26% Similarity=0.490 Sum_probs=185.4
Q ss_pred CEEEEEe--eeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHH
Q 005764 378 KYVRIVS--KQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQR 455 (678)
Q Consensus 378 ~Y~~v~S--~qmvGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~r 455 (678)
.|++|.+ .+|+|++|+||+|.++.++|+++.+ +|++|.+||||+|+++|.+++++||||||||+|++. +.++
T Consensus 72 ~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~--~~~~ 145 (282)
T 2imq_X 72 GYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDV--TSTN 145 (282)
T ss_dssp TEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCC--CTTS
T ss_pred ceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCc--hHHH
Confidence 4666666 7899999999999999999888765 567889999999999999999999999999999954 3467
Q ss_pred HHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccccCChHHHHHHHHhcchhHHhhhhhhhHHHhcCCcccCc
Q 005764 456 RNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGW 535 (678)
Q Consensus 456 RN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 535 (678)
||+|+..|++++.+ +.++++|||+||||||++.+.++++++|++++|..|+++|||..+++ |.+|.||
T Consensus 146 R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f 213 (282)
T 2imq_X 146 TKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGW 213 (282)
T ss_dssp SSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTC
T ss_pred HHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-ccccccc
Confidence 99999999886543 35688999999999999999999999999999999999999999999 9999999
Q ss_pred cccCcCCCCCcccccCCcccCCCCCCCCCcccCCCcccceeeec---CceeEEeeccC-CCCCCCCcCceeEEEEEE
Q 005764 536 KEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLG---KGIKQLAYTRA-EILLSDHRPVSSTFLVQV 608 (678)
Q Consensus 536 ~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~s~KkR~PAWCDRIL~~g---~~i~~l~Y~s~-e~~~SDHRPV~A~F~v~v 608 (678)
.|++|+|+|||||+.+++.|++ +|+|||||||||++ .+++++.|.+. ++.+|||+||+|.|.+++
T Consensus 214 ~e~~i~f~PTYk~~~~~~~y~~--------~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 214 TEPQVTFKPTYKFKPNTDEYDL--------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp BCCCCCSCCCBCBCTTSSCBCT--------TSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred ccCCcCCCCCccccCCCccccc--------cCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 9999999999999999999974 79999999999996 47999999996 899999999999998764
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.83 E-value=4.7e-08 Score=93.89 Aligned_cols=66 Identities=21% Similarity=0.354 Sum_probs=49.2
Q ss_pred cccCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccccc
Q 005764 418 GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (678)
Q Consensus 418 G~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (678)
+....++.+.+.+.+.+..|+++|+||.++.. ....|..++..|++.+.= ......+|++||||..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~--~~~~~~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTRE--HSAERIRQLKTVLGKMQE-----------APDSTTVIFAGDTNLR 162 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGG--GHHHHHHHHHHHHHHHHH-----------SCTTSEEEEEEECCCC
T ss_pred cccccceEEEEEEEeCCEEEEEEeeccccccc--chhhhhHHHHHHhhhhhh-----------ccCcceEEEeCccCCC
Confidence 44566889999999999999999999998754 345677778777765421 1123479999999973
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.66 E-value=1.7e-07 Score=91.63 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=48.3
Q ss_pred cCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccc
Q 005764 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (678)
Q Consensus 420 lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (678)
...+|++.+++.+.+..|+++|+||.+.... ...|..++..|++.+. ....+|++||||-.-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~--------------~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ--------------NSNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC--------------SCCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh--------------cCCcEEEEeECCCCC
Confidence 3568999999999999999999999987432 2357788888876431 145899999999854
No 8
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.61 E-value=1.9e-07 Score=93.79 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=50.5
Q ss_pred cCCceEEEEEEEEcCEEEEEecccCCCCCCC----hhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccc
Q 005764 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (678)
Q Consensus 420 lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~----~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (678)
..++|++.+.+.+.+..|+++|+||.++... .....|..++..|.+.+.=. .+.....+|++||||-
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~---------~~~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK---------NIPKDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH---------TCCTTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh---------CCCCCCeEEEEeeCCC
Confidence 4578999999999999999999999987432 13456888888776643210 0112358999999998
Q ss_pred ccc
Q 005764 496 RLN 498 (678)
Q Consensus 496 RI~ 498 (678)
.-.
T Consensus 199 ~~~ 201 (301)
T 1zwx_A 199 NYG 201 (301)
T ss_dssp CTT
T ss_pred CCC
Confidence 543
No 9
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.56 E-value=7.5e-07 Score=85.71 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=45.4
Q ss_pred cCCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccccc
Q 005764 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (678)
Q Consensus 420 lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (678)
.+..+.+.+.+.+.+..|.++|+||.+.... ...|..++..++..+..... ......+|++||||.+
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~~--------~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREIIA--------QNPGALVFFGGDLNLR 169 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHHH--------HSTTCEEEEEEECCCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhhh--------ccCCCcEEEeccCCCC
Confidence 4567888999999999999999999987542 34555666665543211000 0123479999999974
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.48 E-value=8.6e-07 Score=83.38 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=45.2
Q ss_pred CceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccc
Q 005764 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (678)
Q Consensus 422 NKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (678)
..+.+.+.+.+.+..|.++++||.+... ....|..++.+|++.+.= .....++|++||||.
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~--~~~~r~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKN--QSQERTKQLRVVLQKIKE-----------APEDAIVIFAGDTNL 155 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGG--GHHHHHHHHHHHHHHHHH-----------SCTTEEEEEEEECCC
T ss_pred cceEEEEEEecCCcEEEEeccccccccc--cHHHHHHHHHHHHHHHHh-----------cCCCCCEEEEEecCC
Confidence 3567788888899999999999998753 345677788888765421 012347999999996
No 11
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.46 E-value=8.2e-07 Score=87.07 Aligned_cols=137 Identities=17% Similarity=0.135 Sum_probs=80.2
Q ss_pred cCCceEEEEEEEEc--CEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcc-cCCCCCCCCCCCCCCCceEEEcCccccc
Q 005764 420 MGNKGSVSVSMTLF--QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (678)
Q Consensus 420 lGNKGaVaVr~~l~--~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (678)
...++++.+.+... +..|.++|+||.+.. ...|..++..|++.+. .. .. +++|++||||-
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~~~~-----------~~-~pvil~GDfN~- 169 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELHDKI-----------AQ-YPTLLMGDFNA- 169 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTHHHH-----------HH-SCEEEEEECCC-
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHHHc-----------CC-CCEEEEeeCCC-
Confidence 45788999999874 678999999999863 3568888888877543 10 01 26999999997
Q ss_pred ccCChHHHHHHHHhcchhHHhhhhhhhHHHhcCCcccCccccC-cCCCCCcccccCCcccCCCCCCCCCcccCCCcccce
Q 005764 497 LNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGV-INFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRI 575 (678)
Q Consensus 497 I~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~-I~FpPTYKy~~~Sd~Y~~~~~k~s~KkR~PAWCDRI 575 (678)
.+.+.+..++..+ |. .-|.... -...+||.-..+. .|. ....| .|+|
T Consensus 170 --~~~~~~~~~l~~~-l~------------------d~~~~~~~~~~~~t~~~~~~~------~~~-~~~~r----iD~i 217 (257)
T 3l1w_A 170 --ESGEEVHQLVQKK-FQ------------------DSKNLATHYGPRGTFQNFTYT------KPW-AELEE----IDYI 217 (257)
T ss_dssp --CTTSHHHHHHTTT-CE------------------EGGGTSEEESCSCCBCTTCTT------CCG-GGCBC----CEEE
T ss_pred --CCCcHHHHHhhhh-cc------------------chhhhhcccCCCCcccCCccc------CCC-CCCCc----eeEE
Confidence 3333333344321 10 0111110 0122333211000 000 00133 7999
Q ss_pred eeecCceeEEeeccC-----CCCCCCCcCceeEEEEE
Q 005764 576 LWLGKGIKQLAYTRA-----EILLSDHRPVSSTFLVQ 607 (678)
Q Consensus 576 L~~g~~i~~l~Y~s~-----e~~~SDHRPV~A~F~v~ 607 (678)
|. .+++...+... ....|||.||.|.|.+.
T Consensus 218 ~~--~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 218 YV--KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp EE--ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEEC
T ss_pred EE--CCcEEEEEEEeccCcCCcccCCcceEEEEEEEE
Confidence 99 56777666542 24689999999998764
No 12
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.39 E-value=2.2e-06 Score=83.79 Aligned_cols=68 Identities=6% Similarity=0.174 Sum_probs=46.4
Q ss_pred CCceEEEEEEEEcCEEEEEecccCCCCCCCh---hHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccc
Q 005764 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDG---AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (678)
Q Consensus 421 GNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~---~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (678)
.+++++.+.+.+.+..|+++|+||.++.... ....|...+.+|.+.+.-. .....++|++||||-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~----------~~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE----------LKRDNPVLIMGDMNISP 156 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH----------CCTTSCEEEEEECCCCC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh----------hhCCCCEEEEeECCCCC
Confidence 4578999999998889999999999875321 2235666666665443200 01235799999999754
Q ss_pred c
Q 005764 498 N 498 (678)
Q Consensus 498 ~ 498 (678)
+
T Consensus 157 ~ 157 (268)
T 1ako_A 157 T 157 (268)
T ss_dssp S
T ss_pred c
Confidence 3
No 13
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.39 E-value=4.6e-07 Score=93.56 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=51.8
Q ss_pred ccCCceEEEEEEEEcCEEEEEecccCCCCCCC----hhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccc
Q 005764 419 YMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (678)
Q Consensus 419 ~lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~----~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (678)
...+||.+.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.=. .+.....||++||||
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~---------~~~~~~pvIl~GDfN 216 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK---------NIPKDETVYIGGDLN 216 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH---------TCCTTSCEEEEEECC
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh---------ccCCCCeEEEEeECC
Confidence 46789999999999999999999999986421 24577888888887653210 011234799999999
Q ss_pred ccc
Q 005764 495 YRL 497 (678)
Q Consensus 495 YRI 497 (678)
-.-
T Consensus 217 ~~~ 219 (317)
T 3i41_A 217 VNK 219 (317)
T ss_dssp CCT
T ss_pred CCC
Confidence 854
No 14
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.37 E-value=1.4e-06 Score=86.19 Aligned_cols=139 Identities=15% Similarity=0.106 Sum_probs=79.8
Q ss_pred cCCceEEEEEEEE--cCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccc
Q 005764 420 MGNKGSVSVSMTL--FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (678)
Q Consensus 420 lGNKGaVaVr~~l--~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (678)
..+++++.+.+.. .+..|+++|+||.+.. ...|..++..|++.+.= +.....+|++||||-
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~-----------~~~~~pvIl~GDfN~-- 175 (267)
T 3g6s_A 113 VCVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE-----------IVGERPAVVTGDFNV-- 175 (267)
T ss_dssp SSCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH-----------HTTTSCEEEEEECSS--
T ss_pred cCcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-----------hcCCCCEEEEeECCC--
Confidence 3467888888885 5789999999998753 35677777777654321 001247999999997
Q ss_pred cCChHHHHHHHHhcc--hhHHhhhhhhhHHHhcCCcccCccccCc--CCCCCcccccCCcccCCCCCCCCCcccCCCccc
Q 005764 498 NMMDTEVRELVAQKR--WDKLINSDQLSKELHSGHVFEGWKEGVI--NFPPTYKYEINSDRYVGENPKEGEKKRSPAWCD 573 (678)
Q Consensus 498 ~l~~~ev~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I--~FpPTYKy~~~Sd~Y~~~~~k~s~KkR~PAWCD 573 (678)
.+.+.+...+.... |.. .|.+... ...+||....... ...+.-.|
T Consensus 176 -~~~~~~~~~l~~~~~~l~d------------------~~~~~~~~~~~~~T~~~~~~~~------------~~~~~riD 224 (267)
T 3g6s_A 176 -TDASDAYETITTNEFVMKD------------------AYKTAARVTGVDYTFHDFARIP------------AEDCEKID 224 (267)
T ss_dssp -CTTSHHHHHHHSSSSCCEE------------------HHHHCSEEEECSCSBCTTTTSC------------GGGCCCCE
T ss_pred -CCCCHHHHHhhcCCcchhh------------------hHhhhccccCCCCCEeCCCCCC------------CCCCCcEe
Confidence 33333333332221 111 1111111 1124444321100 01112289
Q ss_pred ceeeecCceeEEeeccCCC----CCCCCcCceeEEEEE
Q 005764 574 RILWLGKGIKQLAYTRAEI----LLSDHRPVSSTFLVQ 607 (678)
Q Consensus 574 RIL~~g~~i~~l~Y~s~e~----~~SDHRPV~A~F~v~ 607 (678)
+||..+. ++...+..... ..|||.||.|.....
T Consensus 225 ~I~~s~~-~~~~~~~v~~~~~~~~~SDH~PV~a~~~~~ 261 (267)
T 3g6s_A 225 FIFVTPQ-VLVKSCEIPAEVPEALLSDHNPQLADLELE 261 (267)
T ss_dssp EEEECTT-SEEEEEEECCCCSSSCCCSBCCEEEEEEEC
T ss_pred EEEeCCC-ceEEEEEEecCCCCCCCCCcccEEEEEEec
Confidence 9999863 66666664322 579999999976553
No 15
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.34 E-value=3.8e-06 Score=89.21 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=46.2
Q ss_pred CCceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccccc
Q 005764 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (678)
Q Consensus 421 GNKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (678)
...+++.+.+.+.+..|+++|+||.++.. ...+|..++..++..+.-... ......||++||||-+
T Consensus 210 ~~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~~Q~~~l~~~~~~~~~--------~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 210 MYRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRCAQFGFCMDKVREIIA--------QNPGALVFFGGDLNLR 275 (362)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHHHHHHHHHHHHHHHHH--------HCTTCEEEEEEECCCC
T ss_pred ccceEEEEEEEECCEEEEEEEecCCcccc--chhHHHHHHHHHHHHhHhhhh--------cCCCCCeEEeecCCCC
Confidence 34678889999999999999999998753 345677777777654321000 0122479999999964
No 16
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.31 E-value=2.1e-06 Score=86.09 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=48.6
Q ss_pred cCCceEEEEEEEEcCEEEEEecccCCCCCCC----hhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccc
Q 005764 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (678)
Q Consensus 420 lGNKGaVaVr~~l~~ts~cFVn~HLaAg~k~----~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (678)
..++|++.+.+.+.+..|.++|+||.+.... .....|..++.+|.+.+.=. . +....++|++||||-
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~----~~~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK-----N----IPNNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH-----T----CCTTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----c----CCCCCEEEEEeeCCC
Confidence 4578999999999999999999999987421 13456888888776543210 0 112347999999998
Q ss_pred cc
Q 005764 496 RL 497 (678)
Q Consensus 496 RI 497 (678)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=1.3e-05 Score=81.31 Aligned_cols=62 Identities=8% Similarity=-0.052 Sum_probs=42.3
Q ss_pred CCceEEEEEEE--EcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccc
Q 005764 421 GNKGSVSVSMT--LFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (678)
Q Consensus 421 GNKGaVaVr~~--l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (678)
-+++++.+.|. ..+..|+++|+||.+.. ...|..++..|++.+.= ... .....+|++||||-
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~--~~~-------~~~~pvIl~GDfN~ 181 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKE--LGR-------GKNLPAILTGDFNV 181 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH--TTT-------TSCCCEEEEEECSS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHH--Hhc-------CCCCcEEEEEeCCC
Confidence 35677777877 45788999999998642 35677788777665321 000 01247999999996
No 18
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.60 E-value=0.00045 Score=65.95 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=35.4
Q ss_pred EEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccc
Q 005764 425 SVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (678)
Q Consensus 425 aVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (678)
.+.+.+.+.+..|.++|+|+.++.. . | -+.++++.+.= . ....+|++||||-..
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~-~--~~~~l~~~l~~-------~-----~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----P-R--FIKQVLSDLQR-------D-----LDSHTLIMGDFNTPL 150 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----H-H--HHHHHHHHTTT-------T-----CCTTEEEEEECSSCS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----H-H--HHHHHHHHHHh-------c-----cCCCEEEEccCCCCC
Confidence 5667777888999999999998642 1 1 13334443210 0 124799999999843
No 19
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.50 E-value=0.00033 Score=67.81 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=31.5
Q ss_pred EEEEecccCCCCCCCh--hHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccccccc
Q 005764 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (678)
Q Consensus 436 s~cFVn~HLaAg~k~~--~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (678)
.|+++|+||.++...+ ....|...+..|.+.+.- . +.....+|++||||-...
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD--E--------MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH--H--------HTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH--H--------hcCCCCEEEEeECCCCCc
Confidence 6999999999876422 223455555555432210 0 011347999999998544
No 20
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.35 E-value=0.00036 Score=68.23 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=40.5
Q ss_pred CceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccccc
Q 005764 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (678)
Q Consensus 422 NKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (678)
..|.+.+.+.+.+..|.|+|+|+..+.. ...+...+.++++.+ ....+|++||||-.
T Consensus 102 ~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~---------------~~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 102 TNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM---------------GPKRLIFGGDANAK 158 (245)
T ss_dssp CSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT---------------CSSSEEEEEECCCC
T ss_pred cCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh---------------CCCcEEEEeccccC
Confidence 4677888888888889999999998753 233445566665531 12369999999964
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.19 E-value=0.00041 Score=68.97 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=22.8
Q ss_pred ccceeeecCce-eEEeecc-CCCCCCCCcCceeEEE
Q 005764 572 CDRILWLGKGI-KQLAYTR-AEILLSDHRPVSSTFL 605 (678)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHRPV~A~F~ 605 (678)
.|+||..+.-. ....+.- .+...|||.||.+.|.
T Consensus 249 ID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 249 LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 89999975321 1333332 2456899999999875
No 22
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=97.11 E-value=0.0003 Score=68.18 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=24.3
Q ss_pred ccceeeecCce-eEEeeccC-CCCCCCCcCceeEEEEE
Q 005764 572 CDRILWLGKGI-KQLAYTRA-EILLSDHRPVSSTFLVQ 607 (678)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~s~-e~~~SDHRPV~A~F~v~ 607 (678)
.|+||..+.-. +...+... +...|||.||.+.|.+.
T Consensus 220 ID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 220 IDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp CEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 89999975311 13333332 57899999999998653
No 23
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.07 E-value=0.0027 Score=70.16 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=23.3
Q ss_pred ccceeeecCce-eEEeecc-CCCCCCCCcCceeEEEE
Q 005764 572 CDRILWLGKGI-KQLAYTR-AEILLSDHRPVSSTFLV 606 (678)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHRPV~A~F~v 606 (678)
.|+||....-. +...+.- .+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 79999875321 1233322 34679999999998864
No 24
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.88 E-value=0.0002 Score=82.46 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcc-cCCCCCCCCCCCCCCCceEEEcCcccccccCChHHHHHHHHhc
Q 005764 434 QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQK 511 (678)
Q Consensus 434 ~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~ 511 (678)
+..|+++|+||.+.... ...|...+..|++.+. +........+..-....+||++||||- .+.+.+.+++..+
T Consensus 546 g~~l~V~ntHL~~~p~~--~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs---~P~s~~~~~l~~~ 619 (727)
T 4b8c_D 546 GDTIWAVTTHLHWDPKF--NDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNS---YINSAVYELINTG 619 (727)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CceEEEEEeccccCCCC--CchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCC---CCCCcceEeeecC
Confidence 66899999999986432 2346666665554432 100000000000012347999999997 4555555555443
No 25
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=96.78 E-value=0.0011 Score=68.06 Aligned_cols=37 Identities=32% Similarity=0.571 Sum_probs=24.5
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
.+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh-hCCCE--EEEEEc
Confidence 47789999998532212236667643 34686 889998
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=96.69 E-value=0.00046 Score=68.53 Aligned_cols=60 Identities=10% Similarity=0.173 Sum_probs=35.2
Q ss_pred ceEEEEEEEEc---CEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccc
Q 005764 423 KGSVSVSMTLF---QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (678)
Q Consensus 423 KGaVaVr~~l~---~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (678)
.+.+.+.|... +..|.+||+||.+... .++-+.+.+++..+. .. .....+|++||||-.-
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~--~~---------~~~~~vil~GDfN~~~ 173 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ--QK---------WHLNDVMLMGDFNADC 173 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH--HH---------HCCCCEEEEEECCCST
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH--Hh---------CCCCCEEEEecCCCCC
Confidence 55666777765 5689999999997531 111222333332210 00 0124799999999743
No 27
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.07 E-value=0.0033 Score=61.96 Aligned_cols=36 Identities=31% Similarity=0.587 Sum_probs=24.1
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 5688999999432222247788754 34686 778997
No 28
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=96.06 E-value=0.013 Score=56.80 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=28.4
Q ss_pred EEEEecccCCCCCCCh--hHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCccccc
Q 005764 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (678)
Q Consensus 436 s~cFVn~HLaAg~k~~--~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (678)
.|.++|+|+.+....+ ....|.+-+.+|.+.+.- . +.....+|++||||-.
T Consensus 98 ~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~p~Il~GDFN~~ 150 (257)
T 2voa_A 98 GIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQK--T--------VDFRSFAVWCGDMNVA 150 (257)
T ss_dssp TEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHH--H--------CCTTSCEEEEEECSCC
T ss_pred CEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHH--H--------hcCCCCEEEEeeCCCC
Confidence 5889999998875311 223343334444332210 0 0112479999999964
No 29
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.60 E-value=0.032 Score=57.50 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=37.1
Q ss_pred CceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccc
Q 005764 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (678)
Q Consensus 422 NKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (678)
..|++.|+ +.+ +.|++.||.+... ..|.+.+..|... |... ...|. ..|...+++||||-
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~----~ea~~~v~~I~~~--~~~~--~~~~~--~~~~~~ii~GDFN~ 180 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGG----SDAVSLIRNIFTT--FNSS--SSPPE--RRVYSWMVVGDFNR 180 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTT----TTHHHHHHHHHHH--HHC-----CGG--GGGCEEEEEEECSS
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCC----chHHHHHHHHHHH--HHhc--ccCCc--ccCCcEEEEeeCCC
Confidence 67888884 666 9999999999752 1245556666553 2110 00010 02358999999995
No 30
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=95.48 E-value=0.016 Score=62.73 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=45.1
Q ss_pred CEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcc-cCCCCCCCCCC--CCCCCceEEEcCcccccccCChHHHHHHHHh
Q 005764 434 QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQ--TIPSHDQIFWFGDLNYRLNMMDTEVRELVAQ 510 (678)
Q Consensus 434 ~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~-F~~~~~~~~p~--~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~ 510 (678)
+..|+++|+||..+... ...|..++..|++.+. |........+. .-...-+||++||||- .+.+.+.+++.+
T Consensus 194 ~~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs---~P~s~vy~~L~~ 268 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS---LPDSGVVEYLSN 268 (398)
T ss_dssp CCEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSC---CTTSHHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCC---CCCCHHHHHHhc
Confidence 46799999999997543 3457778777776532 21100000000 0001237999999998 788888888876
Q ss_pred cc
Q 005764 511 KR 512 (678)
Q Consensus 511 ~~ 512 (678)
+.
T Consensus 269 G~ 270 (398)
T 3ngq_A 269 GG 270 (398)
T ss_dssp TE
T ss_pred CC
Confidence 54
No 31
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=94.49 E-value=0.092 Score=52.19 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=25.5
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
.+.|.||||||..-..+. |.+||.. ..||| |++||+
T Consensus 7 ~mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred cceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 377899999995433333 7888854 34587 778997
No 32
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=89.97 E-value=0.048 Score=51.94 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred eeEEEEEeeeeCCCCCCCCCC----CcccccCCCCCCCEEEEeeeee
Q 005764 103 KDVRVTIGTWNVAGRQPYEDL----DIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 103 ~~~ri~vgTwNV~G~~p~~~l----dl~~WL~~~~~~DIYvlGfQEi 145 (678)
+...+.|-||||+|..+.... -|.+||.. ..||| |+|||+
T Consensus 10 ~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 53 (256)
T 4fva_A 10 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 53 (256)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEec
Confidence 345788999999985432210 14455533 34695 899998
No 33
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=85.80 E-value=0.13 Score=47.71 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=23.2
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 005764 106 RVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
++.|-||||+|..+... ..|.+||.. ..||| |+|||+
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 43 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLAL-YTPDV--VFLQEL 43 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEeC
Confidence 46788999998533211 114455533 34695 889998
No 34
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=82.34 E-value=0.28 Score=46.46 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=23.9
Q ss_pred ccceeeecC--ceeEEeec-----c--CCCCCCCCcCceeEEEE
Q 005764 572 CDRILWLGK--GIKQLAYT-----R--AEILLSDHRPVSSTFLV 606 (678)
Q Consensus 572 CDRIL~~g~--~i~~l~Y~-----s--~e~~~SDHRPV~A~F~v 606 (678)
.|+||+++. .+....+. . .....|||.||.|.|.+
T Consensus 211 iD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 211 FDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred EEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 799999864 23333332 2 23446999999999976
No 35
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=80.05 E-value=0.36 Score=50.96 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=26.3
Q ss_pred eeEEEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 005764 103 KDVRVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 103 ~~~ri~vgTwNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
+..++.|-||||+|...... .-|.+||.. ..||| |+|||+
T Consensus 116 ~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~-~~PDI--V~LQEv 159 (362)
T 4gew_A 116 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 159 (362)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEcC
Confidence 45678889999999532111 014567643 34696 899998
No 36
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=76.24 E-value=0.29 Score=48.54 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=35.7
Q ss_pred CceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccc
Q 005764 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (678)
Q Consensus 422 NKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (678)
..|++.|.+.+ ..+.++|+|++.+... ..+.+.+..+...+. ...+|++||||---
T Consensus 77 ~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~~---------------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 77 STHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRLR---------------GARVVICADTNAHS 132 (240)
T ss_dssp CSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHTT---------------TSCEEEEEECCCCC
T ss_pred CCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhcC---------------CCcEEEEEeccccc
Confidence 46777777654 4588999999998642 233344444433210 13699999999643
No 37
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=76.11 E-value=0.28 Score=47.12 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=24.2
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
+.|.||||+|........|.++|.. ..||| |+|||+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 37 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA-SGADI--VCVQEL 37 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH-TTCSE--EEEECC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh-cCCCE--EEEEEe
Confidence 5689999998432211136777754 35797 788999
No 38
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=74.66 E-value=0.31 Score=47.07 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=22.5
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
+.|.||||+|.... -..|.+||.. ..||| |||||+
T Consensus 1 lrv~t~Nv~~~~~~-~~~i~~~i~~-~~~Di--i~LQE~ 35 (268)
T 1ako_A 1 MKFVSFNINGLRAR-PHQLEAIVEK-HQPDV--IGLQET 35 (268)
T ss_dssp CEEEEEECSCGGGC-HHHHHHHHHH-HCCSE--EEEECC
T ss_pred CEEEEEehhHHHHH-HHHHHHHHHH-cCCCE--EEEEec
Confidence 35899999985321 1124556533 35685 899998
No 39
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=73.80 E-value=0.25 Score=48.44 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=23.3
Q ss_pred ccceeeecCce-eEEeecc-CCCCCCCCcCceeEEEEE
Q 005764 572 CDRILWLGKGI-KQLAYTR-AEILLSDHRPVSSTFLVQ 607 (678)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHRPV~A~F~v~ 607 (678)
.|+||....-. +.....- .+...|||.||.+.|...
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~~~ 258 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIELL 258 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEECC
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhhhh
Confidence 89999876422 1222222 245789999999987543
No 40
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=70.12 E-value=0.49 Score=44.70 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=24.1
Q ss_pred EEEEeeeeCCCCCCCCC-CCcccccCCCCCCCEEEEeeeee
Q 005764 106 RVTIGTWNVAGRQPYED-LDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~~-ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
.+.|.||||+|...... ..|.+||.. ..||| |+|||+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~-~~~DI--v~LQE~ 44 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS-QDPSV--CCIQET 44 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH-HCCSE--EEEECC
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH-cCCCE--EEEecc
Confidence 36789999999543210 135566643 34686 889998
No 41
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=68.56 E-value=0.62 Score=44.85 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=22.5
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
+.|.||||+|..... ..|.++|.. ..||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~-~~i~~~i~~-~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRL-HIVIPWLKE-NKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTH-HHHHHHHHH-HCCSE--EEEECC
T ss_pred eEEEEEecCChHHHH-HHHHHHHhh-cCCCE--EEEEEe
Confidence 568999999853221 124455532 35686 889999
No 42
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=66.71 E-value=0.5 Score=46.54 Aligned_cols=37 Identities=32% Similarity=0.593 Sum_probs=24.3
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
.+.|.||||+|........|..+|.. ..||| |+|||+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 64 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 64 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh-cCCCE--EEEEEe
Confidence 47789999998432211226666643 35685 889999
No 43
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=65.34 E-value=0.57 Score=47.69 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=30.9
Q ss_pred EEEEEecccCCCCCCC-hhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccccc
Q 005764 435 SRLCLVCSHLTSGQKD-GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (678)
Q Consensus 435 ts~cFVn~HLaAg~k~-~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (678)
..|.++|+||.++... .....|.+.+..|...+.- +.....+|++||||-..
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHHHSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHh-----------cccCCCEEEEeeCCCCC
Confidence 3689999999876532 1123455555555543210 00114699999999643
No 44
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=61.41 E-value=0.71 Score=44.18 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=22.3
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 107 i~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
+.|.||||+|..... ..|..+|.. ..||| |+|||+
T Consensus 1 lrv~t~Nv~~~~~~~-~~i~~~i~~-~~~DI--v~LQE~ 35 (256)
T 2jc4_A 1 MKITTWNVNSLNVRL-PQVQNLLAD-NPPDI--LVLQEL 35 (256)
T ss_dssp CEEEEEECSCHHHHH-HHHHHHHHS-SCCSE--EEEECC
T ss_pred CEEEEEEcCCcHHHH-HHHHHHHHh-cCCCE--EEEEee
Confidence 357899999842111 124556643 45687 788998
No 45
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=61.38 E-value=0.7 Score=50.94 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=24.3
Q ss_pred EEEEeeeeCCCCCCCC--C-CCcccccCCCCCCCEEEEeeeee
Q 005764 106 RVTIGTWNVAGRQPYE--D-LDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~--~-ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
.+.|.||||+|..... . ..|.+||... .||| |+|||+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~~-~pDI--VcLQEt 188 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEAE-KPDV--LCLQET 188 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHHH-CCSE--EEEECC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHHc-CCCE--EEEEec
Confidence 4778999999942111 0 1367777543 4686 889998
No 46
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=61.29 E-value=3.5 Score=39.98 Aligned_cols=36 Identities=31% Similarity=0.604 Sum_probs=22.8
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccC---------CCCCCCEEEEeeeee
Q 005764 106 RVTIGTWNVAGRQPYEDLDIDDWLC---------TQEPADIYIFGFQEV 145 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~---------~~~~~DIYvlGfQEi 145 (678)
.|.|.||||.+..+... -..|-. ....||| |||||+
T Consensus 3 ~l~v~t~Ni~~~~~~~~--~~~~~~r~~~i~~~i~~~~~DI--v~LQEv 47 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDS--LNNWQYRKDRVCQFIKDHELDI--VGMQEV 47 (267)
T ss_dssp EEEEEEEECCCCCGGGG--GGSGGGTHHHHHHHHHHTTCSE--EEEESB
T ss_pred cEEEEEEEeccCCCCcc--ccCHHHHHHHHHHHHHHcCCCE--EEEecC
Confidence 47789999998654322 123422 1235686 889999
No 47
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=59.65 E-value=1.5 Score=42.32 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=21.5
Q ss_pred EEEeeeeCCCCCCCCCC--------CcccccCCCCCCCEEEEeeeee
Q 005764 107 VTIGTWNVAGRQPYEDL--------DIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 107 i~vgTwNV~G~~p~~~l--------dl~~WL~~~~~~DIYvlGfQEi 145 (678)
+.|.||||.+..+.... -|..+|. ...||| |||||+
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv 44 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLIN-FHDWSL--CCIQEV 44 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHH-HHCCSE--EEEEEE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHH-HcCCCE--EEEeCC
Confidence 35899999986543221 0222332 224687 889999
No 48
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=58.21 E-value=5.4 Score=41.07 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=38.5
Q ss_pred CceEEEEEEEEcCEEEEEecccCCCCCCChhHHHHHHhHHHHHhhcccCCCCCCCCCCCCCCCceEEEcCcccc
Q 005764 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (678)
Q Consensus 422 NKGaVaVr~~l~~ts~cFVn~HLaAg~k~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (678)
....++|++ . .+.|.+.|+.+...+ .|.+.+..|... |.. .|..+...-..+++||||-
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~--~~~-----~~~~~~~~~pwii~GDFNr 188 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNF--FRD-----SRDPVHQALNWMILGDFNR 188 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHH--HHT-----CSSHHHHTCEEEEEEECSS
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHH--Hhc-----CcccccCCCcEEEEecCCC
Confidence 677788877 2 388999999997432 267778888765 321 1100000027999999997
No 49
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=57.86 E-value=1.8 Score=41.51 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=23.2
Q ss_pred ccceeeecCceeEEeecc-----CCCCCCCCcCceeEEE
Q 005764 572 CDRILWLGKGIKQLAYTR-----AEILLSDHRPVSSTFL 605 (678)
Q Consensus 572 CDRIL~~g~~i~~l~Y~s-----~e~~~SDHRPV~A~F~ 605 (678)
.|+||..+ ++....+.. .....|||.||.|.|.
T Consensus 228 iD~i~~s~-~~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 228 LDYIFSNK-ELKVKESKVIFNNKNKEIVSDHFGIEVKIE 265 (266)
T ss_dssp CEEEEESS-CCCEEEEEEESSSSSSCCCSSSCEEEEEEC
T ss_pred eEEEEeCC-CeEEEEEEEEeCCCCCCCcCCccCEEEEEE
Confidence 89999975 444444432 1256799999999885
No 50
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=55.75 E-value=8 Score=38.08 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=13.1
Q ss_pred CCCCCCcCceeEEEE
Q 005764 592 ILLSDHRPVSSTFLV 606 (678)
Q Consensus 592 ~~~SDHRPV~A~F~v 606 (678)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 578999999999865
No 51
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=55.50 E-value=0.99 Score=43.66 Aligned_cols=36 Identities=17% Similarity=0.004 Sum_probs=24.4
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 005764 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (678)
.+.|.||||+|.....+ .|..|+.. ..||| |++||+
T Consensus 19 ~lri~s~Nv~~~~~~~~-~l~~~i~~-~~~DI--v~lQE~ 54 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATA-ELAIEAAT-RKAAI--ALIQEP 54 (245)
T ss_dssp CEEEEEEECTTCHHHHH-HHHHHHHH-HTCSE--EEEESC
T ss_pred ceeeeeeeccccHHHHH-HHHHHHhh-cCCCE--EEEEcc
Confidence 37789999998432111 36677744 45686 889998
No 52
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=52.01 E-value=3.3 Score=42.69 Aligned_cols=39 Identities=21% Similarity=0.511 Sum_probs=25.5
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeeee
Q 005764 106 RVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEVV 146 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEiV 146 (678)
.+.|+|||+-|..+..+ .+|..-+....++|| |++||.=
T Consensus 15 ~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEag 57 (262)
T 2f1n_A 15 DFRVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEAG 57 (262)
T ss_dssp GCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEEC
T ss_pred eeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeecC
Confidence 46789999999654333 234443323455898 7789993
No 53
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=51.33 E-value=2.1 Score=42.90 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=23.0
Q ss_pred eEEEEEeeeeCCCCCCCCCCCcccc----------cCCCCCCCEEEEeeeee
Q 005764 104 DVRVTIGTWNVAGRQPYEDLDIDDW----------LCTQEPADIYIFGFQEV 145 (678)
Q Consensus 104 ~~ri~vgTwNV~G~~p~~~ldl~~W----------L~~~~~~DIYvlGfQEi 145 (678)
.-.|.|.||||....+........| |. ...||| |||||+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv 52 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQ-YHDFDI--FGTQEC 52 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHH-HTTCSE--EEEESB
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHH-HcCCCE--EEEeCC
Confidence 3468899999976443211001234 22 235785 899999
No 54
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=48.96 E-value=5.7 Score=40.79 Aligned_cols=39 Identities=28% Similarity=0.521 Sum_probs=27.6
Q ss_pred EEEeeeeCCCCCCCCC-----CCcccccCCCCCCCEEEEeeeeeeeC
Q 005764 107 VTIGTWNVAGRQPYED-----LDIDDWLCTQEPADIYIFGFQEVVPL 148 (678)
Q Consensus 107 i~vgTwNV~G~~p~~~-----ldl~~WL~~~~~~DIYvlGfQEiV~L 148 (678)
+.|+|||+-|- ++.+ ..+..||.....+|| |.+||+--+
T Consensus 5 ~kv~TwNi~g~-~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~ 48 (261)
T 1sr4_B 5 FKVATWNLQGS-SAVNESKWNINVRQLLSGEQGADI--LMVQEAGSL 48 (261)
T ss_dssp SCEEEEECCCC-SSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSC
T ss_pred cEEEEEEcCCC-CCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCC
Confidence 34899999994 4433 236778866577898 667999555
No 55
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=43.97 E-value=10 Score=37.31 Aligned_cols=15 Identities=33% Similarity=0.157 Sum_probs=12.5
Q ss_pred CCCCCCcCceeEEEE
Q 005764 592 ILLSDHRPVSSTFLV 606 (678)
Q Consensus 592 ~~~SDHRPV~A~F~v 606 (678)
...|||.||.|.|.+
T Consensus 286 ~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 286 QDFSDHYPVVGFTDN 300 (301)
T ss_dssp CCSSSSCCEEEEEC-
T ss_pred cCCCCCccEEEEEec
Confidence 478999999999864
No 56
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=32.48 E-value=5.8 Score=40.35 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=22.0
Q ss_pred EEEEeeeeCCCCCCCCCCCccccc---------CCCCCCCEEEEeeeee
Q 005764 106 RVTIGTWNVAGRQPYEDLDIDDWL---------CTQEPADIYIFGFQEV 145 (678)
Q Consensus 106 ri~vgTwNV~G~~p~~~ldl~~WL---------~~~~~~DIYvlGfQEi 145 (678)
.|.|.||||.+..+..+.+ ..|- .....||| |||||+
T Consensus 29 ~lrV~T~Ni~~~~~~~~~~-~~~~~R~~~i~~~~~~~~pDI--v~LQEv 74 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPN-WGQYKRADLIGQSSYIKNNDV--VIFNEA 74 (317)
T ss_dssp CCCEEEEEEEECCTTTSTT-SCHHHHHHHHHHCSTTSSCSE--EEEEEE
T ss_pred ceEEEEEecccCccccCCC-ccHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 5778999999953221110 0221 11246786 899999
Done!