Query 005765
Match_columns 678
No_of_seqs 186 out of 323
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 13:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2073 SAP family cell cycle 100.0 1E-82 2.3E-87 730.6 40.4 586 1-603 144-775 (838)
2 PF04499 SAPS: SIT4 phosphatas 100.0 1.2E-75 2.5E-80 647.7 29.2 328 1-344 17-475 (475)
3 KOG2073 SAP family cell cycle 98.5 5E-05 1.1E-09 90.2 27.9 81 210-307 473-558 (838)
4 KOG3546 Collagens (type XV) [E 96.0 0.011 2.4E-07 68.0 6.3 17 416-432 406-422 (1167)
5 KOG3546 Collagens (type XV) [E 96.0 0.011 2.4E-07 67.9 6.1 27 622-648 458-484 (1167)
6 PF10508 Proteasom_PSMB: Prote 93.7 1.7 3.7E-05 49.9 15.8 181 3-234 78-265 (503)
7 PF05804 KAP: Kinesin-associat 86.1 12 0.00025 45.3 14.1 79 188-270 550-628 (708)
8 PF10508 Proteasom_PSMB: Prote 86.0 52 0.0011 38.0 18.8 76 188-270 175-251 (503)
9 PF04826 Arm_2: Armadillo-like 85.3 55 0.0012 34.7 19.6 212 5-269 12-240 (254)
10 KOG1924 RhoA GTPase effector D 81.3 3.5 7.5E-05 49.5 6.9 24 188-211 249-272 (1102)
11 PF12238 MSA-2c: Merozoite sur 81.2 2.4 5.3E-05 43.6 5.0 10 382-391 87-96 (205)
12 KOG1924 RhoA GTPase effector D 79.5 5.6 0.00012 47.9 7.7 15 215-229 252-266 (1102)
13 KOG1824 TATA-binding protein-i 73.8 2E+02 0.0044 36.2 18.5 53 47-105 46-98 (1233)
14 PTZ00429 beta-adaptin; Provisi 71.8 2.5E+02 0.0054 34.5 19.4 88 11-102 129-229 (746)
15 KOG0946 ER-Golgi vesicle-tethe 67.5 82 0.0018 38.6 13.3 61 17-78 81-151 (970)
16 PF00514 Arm: Armadillo/beta-c 66.7 18 0.00038 27.0 5.3 37 41-78 5-41 (41)
17 PF08569 Mo25: Mo25-like; Int 65.9 1.1E+02 0.0023 33.9 13.3 141 41-227 116-265 (335)
18 PF11864 DUF3384: Domain of un 57.3 3.5E+02 0.0075 31.0 18.4 261 17-336 149-442 (464)
19 KOG1062 Vesicle coat complex A 56.2 1.5E+02 0.0032 36.5 12.9 95 3-100 52-153 (866)
20 KOG0166 Karyopherin (importin) 55.7 2.2E+02 0.0048 33.4 13.9 53 21-79 88-140 (514)
21 cd00020 ARM Armadillo/beta-cat 53.8 24 0.00051 30.7 4.7 60 42-103 43-102 (120)
22 KOG2023 Nuclear transport rece 51.1 1E+02 0.0023 37.2 10.4 138 159-336 130-289 (885)
23 KOG2085 Serine/threonine prote 49.2 48 0.001 37.8 7.1 50 18-76 151-200 (457)
24 PF05536 Neurochondrin: Neuroc 47.9 5.2E+02 0.011 30.5 15.6 145 49-249 99-243 (543)
25 PF09759 Atx10homo_assoc: Spin 47.8 65 0.0014 29.8 6.7 68 189-257 2-71 (102)
26 KOG2734 Uncharacterized conser 47.2 3.3E+02 0.0071 31.8 13.1 168 43-247 120-306 (536)
27 PF01603 B56: Protein phosphat 45.0 2.8E+02 0.006 31.3 12.5 106 6-123 99-204 (409)
28 PF11707 Npa1: Ribosome 60S bi 44.7 2.6E+02 0.0056 30.5 11.9 43 188-233 129-171 (330)
29 KOG0166 Karyopherin (importin) 43.0 6.3E+02 0.014 29.9 15.4 102 148-267 353-462 (514)
30 PHA02030 hypothetical protein 43.0 78 0.0017 34.6 7.2 8 433-440 128-135 (336)
31 PF04499 SAPS: SIT4 phosphatas 41.0 58 0.0013 37.6 6.4 78 3-80 60-150 (475)
32 PF06371 Drf_GBD: Diaphanous G 38.4 1.6E+02 0.0035 28.4 8.3 77 192-270 83-166 (187)
33 PF11841 DUF3361: Domain of un 38.0 68 0.0015 32.0 5.6 53 40-93 94-150 (160)
34 PF07462 MSP1_C: Merozoite sur 37.1 66 0.0014 37.7 6.0 11 218-228 70-80 (574)
35 PRK13108 prolipoprotein diacyl 34.1 2.7E+02 0.0059 32.3 10.3 15 150-164 136-150 (460)
36 COG5099 RNA-binding protein of 34.0 3.3E+02 0.0072 33.7 11.5 30 48-80 454-483 (777)
37 PF04388 Hamartin: Hamartin pr 33.6 8.8E+02 0.019 29.5 14.9 82 188-272 83-164 (668)
38 PHA03247 large tegument protei 32.6 1.1E+02 0.0024 42.1 7.5 27 419-445 2458-2484(3151)
39 PF06025 DUF913: Domain of Unk 31.7 4.1E+02 0.0089 29.9 11.0 43 182-226 329-371 (379)
40 PHA03264 envelope glycoprotein 30.3 1.1E+02 0.0025 34.4 6.2 7 439-445 197-203 (416)
41 KOG4224 Armadillo repeat prote 30.2 4.3E+02 0.0093 30.3 10.5 218 4-303 250-472 (550)
42 PHA03247 large tegument protei 29.7 1.5E+02 0.0032 41.0 7.9 17 189-205 2085-2101(3151)
43 PF07462 MSP1_C: Merozoite sur 29.4 1.2E+02 0.0025 35.8 6.3 10 300-309 104-113 (574)
44 COG5217 BIM1 Microtubule-bindi 29.0 1.1E+02 0.0024 33.2 5.7 117 185-310 4-139 (342)
45 KOG0168 Putative ubiquitin fus 28.1 1.4E+02 0.003 37.1 6.9 48 183-230 393-440 (1051)
46 KOG2753 Uncharacterized conser 27.4 4.8E+02 0.01 29.3 10.2 183 42-259 39-228 (378)
47 PHA03169 hypothetical protein; 26.4 3.8E+02 0.0082 30.4 9.3 6 633-638 210-215 (413)
48 cd00020 ARM Armadillo/beta-cat 24.3 1.2E+02 0.0026 26.1 4.4 74 46-123 5-78 (120)
49 smart00185 ARM Armadillo/beta- 24.2 1.4E+02 0.0031 21.1 4.1 34 43-77 7-40 (41)
50 PF06025 DUF913: Domain of Unk 24.1 8.6E+02 0.019 27.3 11.9 81 17-102 78-161 (379)
51 KOG0946 ER-Golgi vesicle-tethe 23.6 8.6E+02 0.019 30.5 12.1 79 189-269 182-261 (970)
52 PF05804 KAP: Kinesin-associat 23.5 2.6E+02 0.0057 34.2 8.2 97 5-103 490-587 (708)
53 PF13646 HEAT_2: HEAT repeats; 23.2 2.3E+02 0.005 23.5 5.7 53 22-76 3-58 (88)
54 KOG3036 Protein involved in ce 21.9 1.5E+02 0.0032 32.0 5.0 45 182-226 134-178 (293)
55 PF05616 Neisseria_TspB: Neiss 21.4 3.4E+02 0.0074 31.7 8.0 10 313-322 163-172 (502)
56 KOG2062 26S proteasome regulat 21.4 3.4E+02 0.0074 33.5 8.3 35 299-333 324-362 (929)
57 KOG2140 Uncharacterized conser 21.3 1.1E+03 0.024 28.4 11.9 17 235-251 213-229 (739)
58 PTZ00449 104 kDa microneme/rho 20.4 2.1E+02 0.0045 34.0 6.1 57 593-649 509-570 (943)
59 PF04802 SMK-1: Component of I 20.3 2.1E+02 0.0045 29.3 5.6 46 35-80 131-178 (193)
60 PF13646 HEAT_2: HEAT repeats; 20.2 2E+02 0.0044 23.9 4.8 23 48-70 62-84 (88)
No 1
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1e-82 Score=730.58 Aligned_cols=586 Identities=31% Similarity=0.465 Sum_probs=466.3
Q ss_pred CcchHHHHHHHHhcCcchHHHHHHHHhccCCCCCcChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHcc-
Q 005765 1 MAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS- 79 (678)
Q Consensus 1 r~~p~iVd~LLKHI~tsaImDlLLRLIt~de~~~~~~~~il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~- 79 (678)
|+|++||++||+||++++|||||+|||+||++.|+ +++|++||+++++|+||+++|+|++++++|+||+++||+|+|+
T Consensus 144 k~~~~~v~~~l~hi~~stlMD~Llkli~~de~~~p-~~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s 222 (838)
T KOG2073|consen 144 KKKDNFVDLFLKHIDISTLMDFLLKLISTDEPESP-RTDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLS 222 (838)
T ss_pred HhhhHHHHHHHHHcCccHHHHHHHHhccccCCCCc-hHHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999999986 4999999999999999999999999999999999999999999
Q ss_pred ----CChhHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhhhccCccCCCCCc---chhcccccccCCcccCChhhH
Q 005765 80 ----APPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT---YYMFNRQLTHGSTVTVNPETV 152 (678)
Q Consensus 80 ----sPn~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI~LLe~~r~~~s~---y~~~~~~~~~~~~~~v~p~~L 152 (678)
+|++|+++|+|+++|+|||++||+++++.|++|++|+|||+++.++|..... +..+.....+ ....+...+|
T Consensus 223 ~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~-~d~~~~~~~l 301 (838)
T KOG2073|consen 223 RNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSE-RDPIVLNELL 301 (838)
T ss_pred cccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccc-cCccchHHHH
Confidence 6999999999999999999999999999999999999999999999987543 3444433222 2234578899
Q ss_pred HHHHHhHHHHHHhhcCCCcccccccccccccCCccchhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCc
Q 005765 153 EGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNN 232 (678)
Q Consensus 153 ~ail~~L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNN 232 (678)
++|.+||++|++||.+++....|+||||.++||||++||||||||++||||+++++.+++...+++.+++|+||+|+|||
T Consensus 302 ~~~~p~L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN 381 (838)
T KOG2073|consen 302 GAMEPRLGDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNN 381 (838)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhc---------CCChHHHHHHhhhccHHHHHHHhhhccccc--CCCCCCCCCCCCCCCCCchHHHHH
Q 005765 233 FLHHHVENIILSCLE---------CKNAPLIEHLLHECNLVGKILEAEKNFTLK--DSNKPTVPAEGRLPPRIGNIGHLT 301 (678)
Q Consensus 233 fLH~~Ve~iI~~ILe---------s~n~~Li~hLF~dc~Li~rILea~k~~~~~--~~nk~t~~~egk~~~R~GYMGHLT 301 (678)
|||++|+.||..|+. +.+..++.|+|++|+|+.+|+++|+.+... +..+++..+.|++..|.|||||+|
T Consensus 382 ~lh~~~e~~I~~~~~~~~~~~~~~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~~h~~ 461 (838)
T KOG2073|consen 382 FLHAQVESCIVENLSDETNNDSNISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPIGHLT 461 (838)
T ss_pred HHHHHHHHHHHHhhhccccccccCCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCccceee
Confidence 999999999999998 788999999999999999999999876544 223456667776556999999999
Q ss_pred HHH-HHHHHhcC---CcHHHHHHHh--ccccHHHHHHHHhh------hhhhhcccccccCC-CCCcCCCCCCCCCccccc
Q 005765 302 RIS-NKLIQLGN---NNSEIHAYLQ--ENSEWNDWQINVLS------KRNTLENIYQWACG-RPTALHDRGRDSDDDDYQ 368 (678)
Q Consensus 302 ~IA-N~Lv~~~~---~~~~I~~~L~--~n~~W~~Fv~~~L~------e~N~venv~~w~cG-rp~~~~~~~~dsDddD~~ 368 (678)
||| |.++++.. ....|+++|+ .+..|..|...++. ++|+++++|.|.|| ++.+++++-+..|++++.
T Consensus 462 R~~pn~~vq~~~~~~~~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~~~~~~id~~~~~~e~~~~ 541 (838)
T KOG2073|consen 462 RIAPNVGDQLKIKLEDTNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGYLTSNFIDLTRFNDEEEKA 541 (838)
T ss_pred ecCcchhhhccccccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhhccHHHHhhhccccchhhc
Confidence 999 99999643 6678899998 46788888777765 99999999999999 599999999999998889
Q ss_pred CCcccHHHHHhhhHHH-HHhhcccCCchhhhccCcCCCCCccccCCCccceeeec---ccccCCcCCCcccc-cCCcccc
Q 005765 369 NRDYDVAALANNLSQA-FRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISS---LRLGDDQESGSLFT-NSNWFAF 443 (678)
Q Consensus 369 d~d~d~~~~a~~l~qa-f~y~~~~~~d~eE~~~~~~~~~ed~~~dd~s~e~~~ss---~r~~~~~~~~~~~~-~~~~~~~ 443 (678)
+|+|++.+.++++.++ |+|+++.+....|......+ +..|||||+++|++++ +||||++.+.++|+ |++||+|
T Consensus 542 d~~~~~~~~~~~i~~~~F~~~~de~~~~~e~~~~~~~--~~q~~~dE~~~~~l~~~~~~~lgd~~~~~~~~~~~~~~~~~ 619 (838)
T KOG2073|consen 542 DRDYDVMGHLDNIADHNFSINIDENSPNAEDLEVEDR--LIQYFDDEKAETVLGAMGQLRLGDEDSEDSLKTWNGEELAG 619 (838)
T ss_pred cccccchhhhhHhhhhhccccccccCchhhhhhhhcc--ccccccccchheeecccccccccchhhhhhhhccccccccc
Confidence 9999999999999998 99999999999999988888 9999999999999999 99999999999998 9999999
Q ss_pred cccccccccccCCCCC---CCCCcccccC-CCCCCCCceEeecC-CCccccccCCCCCCCCCCCCCCCCCCCCcccCCCC
Q 005765 444 EDDRVSHERAAGSLAS---PSPNIEETGV-TNGGGHDQVTVGED-DLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCT 518 (678)
Q Consensus 444 ~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (678)
+|++....++.+..-+ -+++.+..+- ...++++..++|+- +...+..+... +.+.... .... +..+...|+.
T Consensus 620 ~d~~~~~~~~~~~~~~~~~D~e~~~t~n~~~~~~d~~~~~~~~~~~~~~~e~~~~~-~~~~~~~-~~~~-~~~~~~~p~~ 696 (838)
T KOG2073|consen 620 QDDKFDINDSEQDSYSGFFDVEEWETYNADEDNDDDTSSVIGEGGESPTGEPSWGE-DSDENGS-ADST-DGTDEFTPDH 696 (838)
T ss_pred cccccCCCcccccccccccccccccCCCCccccccchhhhhhhcCCCCCCcccccc-CCCCCcc-cccC-CCccccCCCC
Confidence 9998777766444200 0011111110 11223335555554 22222222222 2222111 1111 1111222222
Q ss_pred C--CCCCcceeccCCCCCCCCCCCCCCcccCCCccccCCCCCCCCC--CCCCCCCCCCCCCCCCccccccCCccCCCCCC
Q 005765 519 T--EKPPTWVEWRERPDSSNPSSADEPVSIPNGELQDQGGNGDVDV--PEPSPSSSNTEDANITTTGELSKSIDENPSSK 594 (678)
Q Consensus 519 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lp~s~~~~~~~~ 594 (678)
. +..|.|+.|.+++....|.. ..|++.+++.++.+.... ...++ .+..++... ++|...+..++..
T Consensus 697 ~~~~~~p~p~~~~~~~~~v~~~~-----~~~~~d~~s~~~~~n~~~~~~~~s~---~~~~~p~~~--a~~~~~~~~~e~~ 766 (838)
T KOG2073|consen 697 PETENSPSPSKPPGSAEGVSPKA-----SEPNGDVSSLGEQDNELTDSDEQSE---GDETIPKRP--AVPDLTGKDTENA 766 (838)
T ss_pred CcccCCCCCCCCccchhccCCcc-----cccccccccccccCCCCCccccccc---cccCCCCCc--ccccccccccccc
Confidence 2 56689999999988877766 334888877554443332 22222 111222111 5666666666655
Q ss_pred CCCCCCCCC
Q 005765 595 PSEPSESGS 603 (678)
Q Consensus 595 p~~~~~~~~ 603 (678)
-.+++.|+.
T Consensus 767 ~~~~~~~~~ 775 (838)
T KOG2073|consen 767 VVRSTAPDS 775 (838)
T ss_pred ccccCCCcc
Confidence 555554443
No 2
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=100.00 E-value=1.2e-75 Score=647.71 Aligned_cols=328 Identities=35% Similarity=0.553 Sum_probs=289.5
Q ss_pred CcchHHHHHHHHhcCcchHHHHHHHHhccCCCCCcChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccC
Q 005765 1 MAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA 80 (678)
Q Consensus 1 r~~p~iVd~LLKHI~tsaImDlLLRLIt~de~~~~~~~~il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~s 80 (678)
|++|+||++|||||++++|||||+|||++|++. .++++++||++++||+|||++|+|+++.++|+|||++||+||+++
T Consensus 17 k~~~~~v~~llkHI~~~~ImDlLLklIs~d~~~--~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 17 KSQPNFVDNLLKHIDTPAIMDLLLKLISTDKPE--SPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred HhCccHHHHHHHhcCCcHHHHHHHHHHccCccc--chHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999964 589999999999999999999999999999999999999999865
Q ss_pred ------------ChhHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhhhccCccCCCCCcchhc--ccccccCCccc
Q 005765 81 ------------PPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMF--NRQLTHGSTVT 146 (678)
Q Consensus 81 ------------Pn~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI~LLe~~r~~~s~y~~~--~~~~~~~~~~~ 146 (678)
|++|+++|+|+++|++||++||++.. .|+|++|++|||+||| +++++|+.. .....++ +..
T Consensus 95 ~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~-~s~lvn~v~IlieLIR---knnsdy~~~~~~~~~~~~-p~~ 169 (475)
T PF04499_consen 95 RNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG-GSSLVNGVSILIELIR---KNNSDYDEQLYTTIESHP-PSE 169 (475)
T ss_pred hccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHH---hcccccchhhccccccCC-CCc
Confidence 68999999999999999999997544 8999999999999995 778888742 2222333 344
Q ss_pred CChhhHH----HHHHhHHHHHHhhcCCCcccccccccccccCCccchhHHHHHHHHHHHhcCcHHH--------------
Q 005765 147 VNPETVE----GMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAA-------------- 208 (678)
Q Consensus 147 v~p~~L~----ail~~L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa~LL~t~n~~i-------------- 208 (678)
.+|.+++ +|.+||++|++||..++.+..++||+|.+.+|||++|||||||||+||||+||++
T Consensus 170 rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~G~l~~PLG~~RlkI~ELiAeLLhcsNm~LlN~~~~~~~~~~rd 249 (475)
T PF04499_consen 170 RDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTFGVLIPPLGFERLKICELIAELLHCSNMSLLNEPKGEEIVYERD 249 (475)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCCCCCCCCcchHHHHHHHHHHHHHhCCCccccCCccccchhcCcH
Confidence 5676654 5568999999999999999999999999999999999999999999999998752
Q ss_pred --------------------------------------------------------------------------------
Q 005765 209 -------------------------------------------------------------------------------- 208 (678)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (678)
T Consensus 250 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (475)
T PF04499_consen 250 GERERLLEQLQDALNDLEIDDEDIDDNSMDDESDSSEDSRELEVSNDSSDSEEEDESDEDSEDEEEEESSDSEETEEKLR 329 (475)
T ss_pred HHHHHHHHHHHhhhhcccCCccccccccccccccCccccccccccccccccccccCCccccccccccccccccccchhcc
Confidence
Q ss_pred ---------HHHHHHhccHHHHHHHHhhcCCCchhHHHHHHHHHHHh-----cCCChHHHHHHhhhccHHHHHHHhhhcc
Q 005765 209 ---------EKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL-----ECKNAPLIEHLLHECNLVGKILEAEKNF 274 (678)
Q Consensus 209 ---------~~eLi~~~i~~~lLdLFFkYpwNNfLH~~Ve~iI~~IL-----es~n~~Li~hLF~dc~Li~rILea~k~~ 274 (678)
+++|+++|++++||+|||+||||||||++||+||++|| .++++.|+.|||++|+|++|||++|+.+
T Consensus 330 ~~pvvGd~~k~~L~~~~il~~iLdLFfkypwNNFLH~~V~diIqqiln~~~~~~~n~~L~~~Lf~~~~l~~~Il~~~~~~ 409 (475)
T PF04499_consen 330 SNPVVGDYLKIELIELGILPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDESYNSFLVKHLFEDCDLTDRILEGWKEN 409 (475)
T ss_pred CCCCcHHHHHHHHHHCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHhCCCCcccccHHHHHHHHhhccHHHHHHHhhhhc
Confidence 45788999999999999999999999999999999999 4688999999999999999999999876
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCcHH--HHHHHh---ccccHHHHHHHHhhhhhhhccc
Q 005765 275 TLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSE--IHAYLQ---ENSEWNDWQINVLSKRNTLENI 344 (678)
Q Consensus 275 ~~~~~nk~t~~~egk~~~R~GYMGHLT~IAN~Lv~~~~~~~~--I~~~L~---~n~~W~~Fv~~~L~e~N~venv 344 (678)
..+ ..+.++|+|||||||+|||+|+++.+.++. +.+.++ .+++|.+|++++|.++|+++|+
T Consensus 410 ~~~---------~~~~~~RlGYMGHLtlIAn~ivk~~~~~~~~li~~~i~~~~~~~~W~~fv~~~L~et~~~~n~ 475 (475)
T PF04499_consen 410 DES---------QEKPGPRLGYMGHLTLIANEIVKFSEKYPEELISPDIQEELQNEEWEEFVEGVLAETNEKENA 475 (475)
T ss_pred hhh---------cccCCCCcCchhHHHHHHHHHHHHHhcCcHHHHHHHHhhhhhhhhhHHHHHChHHHHHhhcCC
Confidence 432 123379999999999999999998776544 655555 3789999999999999999874
No 3
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=5e-05 Score=90.22 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=63.8
Q ss_pred HHHHHhccHHHHHHHHhhcCCCchhHHHHHHHHHHHhcC-----CChHHHHHHhhhccHHHHHHHhhhcccccCCCCCCC
Q 005765 210 KELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC-----KNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTV 284 (678)
Q Consensus 210 ~eLi~~~i~~~lLdLFFkYpwNNfLH~~Ve~iI~~ILes-----~n~~Li~hLF~dc~Li~rILea~k~~~~~~~nk~t~ 284 (678)
.++-..++++.+|.+|+.|+||||+|+++++|+++++++ +++.+.. ++..+++.++.+...
T Consensus 473 ~~~~~~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~-------~~~~~id~~~~~~e~------- 538 (838)
T KOG2073|consen 473 IKLEDTNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGY-------LTSNFIDLTRFNDEE------- 538 (838)
T ss_pred ccccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhh-------ccHHHHhhhccccch-------
Confidence 344467899999999999999999999999999999985 4444443 667778877765321
Q ss_pred CCCCCCCCCCchHHHHHHHHHHH
Q 005765 285 PAEGRLPPRIGNIGHLTRISNKL 307 (678)
Q Consensus 285 ~~egk~~~R~GYMGHLT~IAN~L 307 (678)
+ +...|.|||||+++||+.+
T Consensus 539 --~-~~d~~~~~~~~~~~i~~~~ 558 (838)
T KOG2073|consen 539 --E-KADRDYDVMGHLDNIADHN 558 (838)
T ss_pred --h-hccccccchhhhhHhhhhh
Confidence 1 1357999999999999976
No 4
>KOG3546 consensus Collagens (type XV) [Extracellular structures]
Probab=96.02 E-value=0.011 Score=67.97 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=10.4
Q ss_pred cceeeecccccCCcCCC
Q 005765 416 AEVVISSLRLGDDQESG 432 (678)
Q Consensus 416 ~e~~~ss~r~~~~~~~~ 432 (678)
++.-=+-|-|+|+-.|+
T Consensus 406 ~~~~~~~l~~~~~~gsg 422 (1167)
T KOG3546|consen 406 PSFRHDKLTFIDMEGSG 422 (1167)
T ss_pred cccccCcceeecccccc
Confidence 34444667777777664
No 5
>KOG3546 consensus Collagens (type XV) [Extracellular structures]
Probab=95.97 E-value=0.011 Score=67.85 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 005765 622 PSEPAESGTPSEPSESVDGNHPSSDPA 648 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (678)
||-|++-|.+++||-|+++|.|-..++
T Consensus 458 pg~pg~~gp~g~pg~pgp~g~pg~~g~ 484 (1167)
T KOG3546|consen 458 PGVPGREGPPGFPGLPGPPGPPGREGP 484 (1167)
T ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCC
Confidence 333333444444444444444444444
No 6
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.73 E-value=1.7 Score=49.92 Aligned_cols=181 Identities=18% Similarity=0.268 Sum_probs=111.7
Q ss_pred chHHHHHHHHhcCcchHHHHHHHHhcc-CCCCCcChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCC
Q 005765 3 HQEIMARLVDLIGITSIMEVLIRLIGA-DEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 81 (678)
Q Consensus 3 ~p~iVd~LLKHI~tsaImDlLLRLIt~-de~~~~~~~~il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~sP 81 (678)
+..++...|.| ..+.|-.+.++.|.. ..+ ..+..+|+.+.+++..++..|.. .+.++...|+.+|+.|.+..+
T Consensus 78 ~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~----~~~~~~~~~~~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 78 YQPFLQRGLTH-PSPKVRRLALKQLGRIARH----SEGAAQLLVDNELLPLIIQCLRD-PDLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC----CHHHHHHhcCccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCch
Confidence 34556666666 334565565553332 222 34578999999999999999954 466788889999999987632
Q ss_pred hhHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhhhccCccCCCCCcchhcccccccCCcccCChhhHHHHHH--hH
Q 005765 82 PALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RL 159 (678)
Q Consensus 82 n~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI~LLe~~r~~~s~y~~~~~~~~~~~~~~v~p~~L~ail~--~L 159 (678)
. +..|..+..+..|-+.|-+.. ..+-+..+.++..+-. .++..+..+.. -|
T Consensus 152 -~-~~~l~~~~~~~~L~~l~~~~~--~~vR~Rv~el~v~i~~-----------------------~S~~~~~~~~~sgll 204 (503)
T PF10508_consen 152 -G-LEQLFDSNLLSKLKSLMSQSS--DIVRCRVYELLVEIAS-----------------------HSPEAAEAVVNSGLL 204 (503)
T ss_pred -h-HHHHhCcchHHHHHHHHhccC--HHHHHHHHHHHHHHHh-----------------------cCHHHHHHHHhccHH
Confidence 2 233444444555555554421 1222333344333322 13444544443 45
Q ss_pred HHHHHhhcCCCcccccccccccccCCccchhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhc---C-CCchh
Q 005765 160 GDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEY---P-YNNFL 234 (678)
Q Consensus 160 ~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkY---p-wNNfL 234 (678)
..+++.|.... . -.|+.+++++..|-.+. .-.+.|.+.|+++.|.+++..- | ++.|+
T Consensus 205 ~~ll~eL~~dD-i---------------Lvqlnalell~~La~~~--~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~ 265 (503)
T PF10508_consen 205 DLLLKELDSDD-I---------------LVQLNALELLSELAETP--HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLL 265 (503)
T ss_pred HHHHHHhcCcc-H---------------HHHHHHHHHHHHHHcCh--hHHHHHHhCCHHHHHHHHHhccccCCcccchh
Confidence 66666665421 1 36899999999999943 3478889999999999998776 4 44444
No 7
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=86.13 E-value=12 Score=45.28 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=49.1
Q ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhccHHHHH
Q 005765 188 KHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKI 267 (678)
Q Consensus 188 ~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNfLH~~Ve~iI~~ILes~n~~Li~hLF~dc~Li~rI 267 (678)
..-|.+|-++..+. .++.....|++.|++..+++||-.+.=.+=+=.|+.=++.+.+- ...-..+|.++.+++..+
T Consensus 550 Dl~LE~Vi~~gtla--~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~--h~~tr~~ll~~~~~~~yl 625 (708)
T PF05804_consen 550 DLLLEVVILLGTLA--SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF--HEETREVLLKETEIPAYL 625 (708)
T ss_pred HHHHHHHHHHHHHH--CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc--ChHHHHHHHhccchHHHH
Confidence 35566776666554 24667788889999999999998887655333333333333331 233445566666666666
Q ss_pred HHh
Q 005765 268 LEA 270 (678)
Q Consensus 268 Lea 270 (678)
++-
T Consensus 626 idL 628 (708)
T PF05804_consen 626 IDL 628 (708)
T ss_pred HHH
Confidence 665
No 8
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=85.96 E-value=52 Score=38.01 Aligned_cols=76 Identities=12% Similarity=0.203 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCchh-HHHHHHHHHHHhcCCChHHHHHHhhhccHHHH
Q 005765 188 KHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFL-HHHVENIILSCLECKNAPLIEHLLHECNLVGK 266 (678)
Q Consensus 188 ~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNfL-H~~Ve~iI~~ILes~n~~Li~hLF~dc~Li~r 266 (678)
..|+++.++++.+...+ +.......+.|++..++..+.. +..| ..-+..++..+-.. ..-..+| .+..++++
T Consensus 175 ~vR~Rv~el~v~i~~~S-~~~~~~~~~sgll~~ll~eL~~---dDiLvqlnalell~~La~~--~~g~~yL-~~~gi~~~ 247 (503)
T PF10508_consen 175 IVRCRVYELLVEIASHS-PEAAEAVVNSGLLDLLLKELDS---DDILVQLNALELLSELAET--PHGLQYL-EQQGIFDK 247 (503)
T ss_pred HHHHHHHHHHHHHHhcC-HHHHHHHHhccHHHHHHHHhcC---ccHHHHHHHHHHHHHHHcC--hhHHHHH-HhCCHHHH
Confidence 58999999999997776 4556778889999999997776 5655 55666777766652 2223444 44677777
Q ss_pred HHHh
Q 005765 267 ILEA 270 (678)
Q Consensus 267 ILea 270 (678)
|..-
T Consensus 248 L~~~ 251 (503)
T PF10508_consen 248 LSNL 251 (503)
T ss_pred HHHH
Confidence 7765
No 9
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=85.29 E-value=55 Score=34.72 Aligned_cols=212 Identities=18% Similarity=0.241 Sum_probs=123.4
Q ss_pred HHHHHHHHhcCc---chHHHHHHHHhccCCCCCcChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCC
Q 005765 5 EIMARLVDLIGI---TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 81 (678)
Q Consensus 5 ~iVd~LLKHI~t---saImDlLLRLIt~de~~~~~~~~il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~sP 81 (678)
+-++.|+..++. +.|-+..+-.++-... |+.. .....+-+.|..+.++|... ++.++..| |+++..++.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~n---q~~Ir~~Ggi~lI~~lL~~p-~~~vr~~A---L~aL~Nls~ 83 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFN---QDIIRDLGGISLIGSLLNDP-NPSVREKA---LNALNNLSV 83 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhH---HHHHHHcCCHHHHHHHcCCC-ChHHHHHH---HHHHHhcCC
Confidence 445666666654 4466666655555433 4333 34556778888888888875 44555554 566665553
Q ss_pred h-hHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhhhccCccCCCCCcchhcccccccCCcccCChhhHHHHHHhHH
Q 005765 82 P-ALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLG 160 (678)
Q Consensus 82 n-~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI~LLe~~r~~~s~y~~~~~~~~~~~~~~v~p~~L~ail~~L~ 160 (678)
+ +-..++ +.+|.++++.++...-+..+-..|+.++..|=- ..+| -..+..+++
T Consensus 84 ~~en~~~I--k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-----~~~~-------------------~~~l~~~i~ 137 (254)
T PF04826_consen 84 NDENQEQI--KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-----TNDY-------------------HHMLANYIP 137 (254)
T ss_pred ChhhHHHH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-----Ccch-------------------hhhHHhhHH
Confidence 2 222233 356777777766543223333566666666521 0111 112456788
Q ss_pred HHHHhhcCCCcccccccccccccCCccchhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCchhHHHHH-
Q 005765 161 DLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVE- 239 (678)
Q Consensus 161 df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNfLH~~Ve- 239 (678)
+|+.||.... +.+|.++++++.-| +.++....+|+..+++..++.||-.-.-+.+|-..+.
T Consensus 138 ~ll~LL~~G~----------------~~~k~~vLk~L~nL--S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~ 199 (254)
T PF04826_consen 138 DLLSLLSSGS----------------EKTKVQVLKVLVNL--SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTF 199 (254)
T ss_pred HHHHHHHcCC----------------hHHHHHHHHHHHHh--ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHH
Confidence 8888887332 14666777765544 3457788999999999999999998765555433321
Q ss_pred -HHHHHHhcC---------CC-hHHHHHHhhhcc-HHHHHHH
Q 005765 240 -NIILSCLEC---------KN-APLIEHLLHECN-LVGKILE 269 (678)
Q Consensus 240 -~iI~~ILes---------~n-~~Li~hLF~dc~-Li~rILe 269 (678)
.-|..++.. ++ ..|. .||++.. +.+++..
T Consensus 200 ~~ni~~~~~~~~~~~~~~~~~~~~L~-~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 200 FENINENIKKEAYVFVQDDFSEDSLF-SLFGESSQLAKKLQA 240 (254)
T ss_pred HHHHHHhhCcccceeccccCCchhHH-HHHccHHHHHHHHHH
Confidence 223223321 12 3455 7888765 6666664
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=81.28 E-value=3.5 Score=49.51 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHHhcCcHHHHHH
Q 005765 188 KHRLKIVEFISVLLTVGSEAAEKE 211 (678)
Q Consensus 188 ~~RLKIvELIa~LL~t~n~~i~~e 211 (678)
+.+..++++++.|+-.+.+...++
T Consensus 249 nmm~dvvkllsalciV~ee~~~ek 272 (1102)
T KOG1924|consen 249 NMMTDVVKLLSALCIVGEENGLEK 272 (1102)
T ss_pred cHHHHHHHHHHHHheeehhhHHHH
Confidence 445555555555555544444333
No 11
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=81.21 E-value=2.4 Score=43.57 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=5.0
Q ss_pred HHHHHhhccc
Q 005765 382 SQAFRYGIYS 391 (678)
Q Consensus 382 ~qaf~y~~~~ 391 (678)
.+||.=.||.
T Consensus 87 ~~YyKkhIy~ 96 (205)
T PF12238_consen 87 TKYYKKHIYK 96 (205)
T ss_pred HHHHHHhccC
Confidence 3455555553
No 12
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=79.49 E-value=5.6 Score=47.89 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=7.9
Q ss_pred hccHHHHHHHHhhcC
Q 005765 215 HGAVRRILDLFFEYP 229 (678)
Q Consensus 215 ~~i~~~lLdLFFkYp 229 (678)
..++++|-.++|-|.
T Consensus 252 ~dvvkllsalciV~e 266 (1102)
T KOG1924|consen 252 TDVVKLLSALCIVGE 266 (1102)
T ss_pred HHHHHHHHHHheeeh
Confidence 345555555555555
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=73.82 E-value=2e+02 Score=36.23 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCChhHHhhcCCHHHHHHHHHHHhcCC
Q 005765 47 TNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENS 105 (678)
Q Consensus 47 q~LIerLId~L~ps~s~evhsNAaeiLceIIr~sPn~Ll~~L~S~e~IeqLl~~mL~~~ 105 (678)
-+++.+|+..|... ..|+|-=|--.|--|+..=+. -.=+.+|+.|+.+||.+.
T Consensus 46 ~kvv~~lLklL~D~-ngEVQnlAVKClg~lvsKvke-----~~le~~ve~L~~~~~s~k 98 (1233)
T KOG1824|consen 46 RKVVKMLLKLLEDK-NGEVQNLAVKCLGPLVSKVKE-----DQLETIVENLCSNMLSGK 98 (1233)
T ss_pred hHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHhhchH-----HHHHHHHHHHhhhhccch
Confidence 46777888777654 346663333444333321111 112468899999999764
No 14
>PTZ00429 beta-adaptin; Provisional
Probab=71.82 E-value=2.5e+02 Score=34.50 Aligned_cols=88 Identities=22% Similarity=0.341 Sum_probs=53.4
Q ss_pred HHhcCcchHHHHHHHHhc---cCCCCCcChhhHHHHh----------hhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHH
Q 005765 11 VDLIGITSIMEVLIRLIG---ADEHMYTNFTESMQWI----------EDTNVLEMIVDKFSSSDSPEVHANAAETLCSIT 77 (678)
Q Consensus 11 LKHI~tsaImDlLLRLIt---~de~~~~~~~~il~WL----------~Eq~LIerLId~L~ps~s~evhsNAaeiLceII 77 (678)
|-.|..+.|.+.++.-|. .|.+.|--+..++--+ .+.+++++|.++|. ..++.+..||.-.|++|.
T Consensus 129 Ls~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 129 MMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhc-CCCccHHHHHHHHHHHHH
Confidence 566778887776654332 2444442222222221 24567888888765 578899999999999998
Q ss_pred ccCChhHHhhcCCHHHHHHHHHHHh
Q 005765 78 RSAPPALAAKISSPNFIGRLFRHAL 102 (678)
Q Consensus 78 r~sPn~Ll~~L~S~e~IeqLl~~mL 102 (678)
...|+.+. + ....+.+|+..+-
T Consensus 208 ~~~~~~l~--l-~~~~~~~Ll~~L~ 229 (746)
T PTZ00429 208 DYGSEKIE--S-SNEWVNRLVYHLP 229 (746)
T ss_pred HhCchhhH--H-HHHHHHHHHHHhh
Confidence 77665431 1 2344555555553
No 15
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.45 E-value=82 Score=38.64 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=34.4
Q ss_pred chHHHHHHHHhccCCCC-----CcChhhHHHHhhh-----hhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHc
Q 005765 17 TSIMEVLIRLIGADEHM-----YTNFTESMQWIED-----TNVLEMIVDKFSSSDSPEVHANAAETLCSITR 78 (678)
Q Consensus 17 saImDlLLRLIt~de~~-----~~~~~~il~WL~E-----q~LIerLId~L~ps~s~evhsNAaeiLceIIr 78 (678)
+.+.|.++-|++.++.+ .....++=.|++| ++.|..|+..+... +.-+-.-+-++|.+|++
T Consensus 81 k~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls 151 (970)
T KOG0946|consen 81 KYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLS 151 (970)
T ss_pred HHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHh
Confidence 45678888888887521 1112345567777 56777777666542 23333444455555553
No 16
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=66.70 E-value=18 Score=27.00 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=32.1
Q ss_pred HHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHc
Q 005765 41 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR 78 (678)
Q Consensus 41 l~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr 78 (678)
.+.+-+.+.|+.|+++|. +.+.+++.+|+-.|+.|.+
T Consensus 5 ~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence 456778999999999999 7788999999999988753
No 17
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=65.86 E-value=1.1e+02 Score=33.92 Aligned_cols=141 Identities=15% Similarity=0.266 Sum_probs=81.4
Q ss_pred HHHhhhh--hHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCChhHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhh
Q 005765 41 MQWIEDT--NVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSIC 118 (678)
Q Consensus 41 l~WL~Eq--~LIerLId~L~ps~s~evhsNAaeiLceIIr~sPn~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVl 118 (678)
.+||..+ +++..|+.--. .+|+-.+++.+|.+-+|. ..|++.+-..+.+.+||+.+-... --+..-+.+.+
T Consensus 116 v~yl~~~~peil~~L~~gy~---~~dial~~g~mlRec~k~--e~l~~~iL~~~~f~~ff~~~~~~~--Fdiasdaf~t~ 188 (335)
T PF08569_consen 116 VDYLERHRPEILDILLRGYE---NPDIALNCGDMLRECIKH--ESLAKIILYSECFWKFFKYVQLPN--FDIASDAFSTF 188 (335)
T ss_dssp HHHHHT--THHHHHHHHGGG---STTTHHHHHHHHHHHTTS--HHHHHHHHTSGGGGGHHHHTTSSS--HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhc---CccccchHHHHHHHHHhh--HHHHHHHhCcHHHHHHHHHhcCCc--cHhHHHHHHHH
Confidence 6777665 68888777666 468888999999999988 667776666667777777654321 11223344444
Q ss_pred hhccCccCCCCCcchhcccccccCCcccCChhhHHH-HHHhHH----HHHHhhcCCCcccccccccccccCCccchhHHH
Q 005765 119 ISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEG-MLGRLG----DLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKI 193 (678)
Q Consensus 119 I~LLe~~r~~~s~y~~~~~~~~~~~~~~v~p~~L~a-il~~L~----df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKI 193 (678)
-+||.. .+.++.. +..+.. .+.+||..... .+|.+-
T Consensus 189 ~~llt~-----------------------hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY----------------vtkrqs 229 (335)
T PF08569_consen 189 KELLTR-----------------------HKKLVAEFLSNNYDRFFQKYNKLLESSNY----------------VTKRQS 229 (335)
T ss_dssp HHHHHS-----------------------SHHHHHHHHHHTHHHHHHHHHHHCT-SSH----------------HHHHHH
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHccCCCe----------------Eeehhh
Confidence 444441 1222222 223333 33456654332 478889
Q ss_pred HHHHHHHHhc-CcHHHHHHHH-HhccHHHHHHHHhh
Q 005765 194 VEFISVLLTV-GSEAAEKELI-RHGAVRRILDLFFE 227 (678)
Q Consensus 194 vELIa~LL~t-~n~~i~~eLi-~~~i~~~lLdLFFk 227 (678)
++|+.+||.- .|-.+..+.+ +..-++.++.|.-.
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d 265 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRD 265 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 9999888844 3334444433 34667777766654
No 18
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=57.26 E-value=3.5e+02 Score=31.00 Aligned_cols=261 Identities=15% Similarity=0.150 Sum_probs=125.7
Q ss_pred chHHHHHHHHhccCCCCCcChhhHHHHhhh---hhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccC--Ch----hHHhh
Q 005765 17 TSIMEVLIRLIGADEHMYTNFTESMQWIED---TNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA--PP----ALAAK 87 (678)
Q Consensus 17 saImDlLLRLIt~de~~~~~~~~il~WL~E---q~LIerLId~L~ps~s~evhsNAaeiLceIIr~s--Pn----~Ll~~ 87 (678)
+.+.++|.-++.+.+-.+ ..+.+ ..+|..++.....+..++...++-.+|-+||+.+ |+ +++..
T Consensus 149 ~~l~~ll~~l~nviKfn~-------~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~v 221 (464)
T PF11864_consen 149 SNLSDLLQFLVNVIKFNF-------NYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEV 221 (464)
T ss_pred hhHHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHH
Confidence 445566655555555321 11222 2467777777666667777788889999999876 43 34444
Q ss_pred cCCH-------HHHHHHHHHHhcCCCCccchhhhhhhhhhccCccCCCCCcchhcccccccCCcccCChhhHHHHHHhHH
Q 005765 88 ISSP-------NFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLG 160 (678)
Q Consensus 88 L~S~-------e~IeqLl~~mL~~~~~~S~LVngIsVlI~LLe~~r~~~s~y~~~~~~~~~~~~~~v~p~~L~ail~~L~ 160 (678)
|++- +..-+.+++++... .--.++..+..+|..... ....+...+.+-+..|.
T Consensus 222 LCsi~~~~~l~~~~w~~m~nL~~S~----~g~~~i~~L~~iL~~~~~----------------~~~~~~~~lRGAv~~l~ 281 (464)
T PF11864_consen 222 LCSIVNSVSLCKPSWRTMRNLLKSH----LGHSAIRTLCDILRSPDP----------------QNKRDINVLRGAVFFLR 281 (464)
T ss_pred HhhHhcccccchhHHHHHHHHHcCc----cHHHHHHHHHHHHcccCc----------------cccccHHHHhhHHHHHH
Confidence 4432 22234555555432 112344445555521000 00112333333333443
Q ss_pred HHHHhhcCCCcccccccccccccCCccchhHHHHHHHHHHHhcCcHHHHHHHHHh--ccH-HHHHHHHhhcCCCchhHHH
Q 005765 161 DLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRH--GAV-RRILDLFFEYPYNNFLHHH 237 (678)
Q Consensus 161 df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~--~i~-~~lLdLFFkYpwNNfLH~~ 237 (678)
. +|-....+ | .|.+...-.-++.-+..-|++++..+.-+++.+ .++ +.+-..+.+..|-.++...
T Consensus 282 ~---ll~~~~~~-------~--~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~ 349 (464)
T PF11864_consen 282 M---LLWGSGEQ-------G--YPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDII 349 (464)
T ss_pred H---HHhccccC-------C--cceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHH
Confidence 3 33322111 1 112222333456666666666665554443332 233 4444556888898777433
Q ss_pred HHHHHHHHhcC---C--C---hHHHHHHhhhccHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 005765 238 VENIILSCLEC---K--N---APLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQ 309 (678)
Q Consensus 238 Ve~iI~~ILes---~--n---~~Li~hLF~dc~Li~rILea~k~~~~~~~nk~t~~~egk~~~R~GYMGHLT~IAN~Lv~ 309 (678)
.. ++..+... + + +.+..++-+-|..++.+.+... -.++|--.|.++++.+.++-.
T Consensus 350 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~----------------~~g~~~~~~~f~~~~~~~lp~ 412 (464)
T PF11864_consen 350 EE-IFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHD----------------FNGPKDKLFNFFERVHSYLPD 412 (464)
T ss_pred HH-HHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCC----------------cCccHHHHHHHHHHHhccCCH
Confidence 32 44444321 1 1 4566666444555554443211 123566677777766654432
Q ss_pred hcCCcHHHHHHHh------ccccHHHHHHHHhh
Q 005765 310 LGNNNSEIHAYLQ------ENSEWNDWQINVLS 336 (678)
Q Consensus 310 ~~~~~~~I~~~L~------~n~~W~~Fv~~~L~ 336 (678)
.+. ..+. +-+ .+..|.+.+...|+
T Consensus 413 s~~--~~vl-~~~~~~~~Ps~~~W~~n~~~ll~ 442 (464)
T PF11864_consen 413 SSA--LLVL-FYEERSCSPSNPDWLDNLQKLLD 442 (464)
T ss_pred HHH--HHHH-HHHhcccCCCChHHHHHHHHHHH
Confidence 110 1111 111 25789988877654
No 19
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.24 E-value=1.5e+02 Score=36.54 Aligned_cols=95 Identities=18% Similarity=0.409 Sum_probs=53.3
Q ss_pred chHHHHHHHHh-cCcch---HHHHHHHHhccCCCCC--cChhhHHHHhhh-hhHHHHHHHhhCCCCCHHHHHhHHHHHHH
Q 005765 3 HQEIMARLVDL-IGITS---IMEVLIRLIGADEHMY--TNFTESMQWIED-TNVLEMIVDKFSSSDSPEVHANAAETLCS 75 (678)
Q Consensus 3 ~p~iVd~LLKH-I~tsa---ImDlLLRLIt~de~~~--~~~~~il~WL~E-q~LIerLId~L~ps~s~evhsNAaeiLce 75 (678)
|.+++..|.=| +|.++ =|+ =+|||..+.-.- -.+-+++-+|+| |+++--|.+.|...-...-+-=++--||+
T Consensus 52 ~rniaKLlYi~MLGypahFGqie-clKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~a 130 (866)
T KOG1062|consen 52 HRNIAKLLYIHMLGYPAHFGQIE-CLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCA 130 (866)
T ss_pred HHHHHHHHHHHHhCCCccchhhH-HHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHH
Confidence 44555555333 23333 133 245555543210 122356677777 77888888888765433444456677888
Q ss_pred HHccCChhHHhhcCCHHHHHHHHHH
Q 005765 76 ITRSAPPALAAKISSPNFIGRLFRH 100 (678)
Q Consensus 76 IIr~sPn~Ll~~L~S~e~IeqLl~~ 100 (678)
+-++.+.+++|-|..+ |++|+++
T Consensus 131 lg~i~s~Emardlape--Ve~Ll~~ 153 (866)
T KOG1062|consen 131 LGNICSPEMARDLAPE--VERLLQH 153 (866)
T ss_pred hhccCCHHHhHHhhHH--HHHHHhC
Confidence 8888766666666542 4555544
No 20
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.68 E-value=2.2e+02 Score=33.44 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=37.7
Q ss_pred HHHHHHhccCCCCCcChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHcc
Q 005765 21 EVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS 79 (678)
Q Consensus 21 DlLLRLIt~de~~~~~~~~il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~ 79 (678)
.-+-||.+.+.+ .+ ++-.-..++|++||..|+....+..+-.||-.|-.|.+.
T Consensus 88 ~~~rkllS~~~~-pp-----i~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsg 140 (514)
T KOG0166|consen 88 QAFRKLLSKERN-PP-----IDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASG 140 (514)
T ss_pred HHHHHHHccCCC-CC-----HHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcC
Confidence 345556666655 21 122222489999999999888889999999999888854
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=53.78 E-value=24 Score=30.66 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=40.4
Q ss_pred HHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCChhHHhhcCCHHHHHHHHHHHhc
Q 005765 42 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALE 103 (678)
Q Consensus 42 ~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~sPn~Ll~~L~S~e~IeqLl~~mL~ 103 (678)
.-+.+.++++.|++.|.. .+..+..+|+..|+.|....+ .....+.....+..|+..+-.
T Consensus 43 ~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 43 QAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred HHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcH-HHHHHHHHCCChHHHHHHHhc
Confidence 334456899999999986 467888899999999987643 222333333456666665543
No 22
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.15 E-value=1e+02 Score=37.21 Aligned_cols=138 Identities=17% Similarity=0.224 Sum_probs=70.4
Q ss_pred HHHHHHhhcCCCcccccccccccccCCccchhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCC--CchhHH
Q 005765 159 LGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPY--NNFLHH 236 (678)
Q Consensus 159 L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpw--NNfLH~ 236 (678)
|+.|..+|..+... ..++.|| .--||||=.++.|.+.-. ..-+..++.-||+|-- +--+..
T Consensus 130 Lp~L~~~L~s~d~n--------~~EgA~~-AL~KIcEDsa~~lds~~~--------~rpl~~mipkfl~f~~h~spkiRs 192 (885)
T KOG2023|consen 130 LPQLCELLDSPDYN--------TCEGAFG-ALQKICEDSAQFLDSDVL--------TRPLNIMIPKFLQFFKHPSPKIRS 192 (885)
T ss_pred HHHHHHHhcCCccc--------ccchhHH-HHHHHHhhhHHHHhhhcc--------cCchHHhHHHHHHHHhCCChhHHH
Confidence 45666777755421 1222232 234899999988877431 3334444444444432 333444
Q ss_pred HHHHHHHHHhcCC-------ChHHHHHHhhh------------ccHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCchH
Q 005765 237 HVENIILSCLECK-------NAPLIEHLLHE------------CNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNI 297 (678)
Q Consensus 237 ~Ve~iI~~ILes~-------n~~Li~hLF~d------------c~Li~rILea~k~~~~~~~nk~t~~~egk~~~R~GYM 297 (678)
+-..||.+++=-. -+.++.+||.- |+-+-++|+--- - -.|
T Consensus 193 ~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~-------------------d--kl~ 251 (885)
T KOG2023|consen 193 HAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP-------------------D--KLV 251 (885)
T ss_pred HHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH-------------------H--hcc
Confidence 4445555433222 24555666652 444445554311 0 135
Q ss_pred HHHHHHHHHHHHhcCC-cHHHHHHHhccccHHHHHHHHhh
Q 005765 298 GHLTRISNKLIQLGNN-NSEIHAYLQENSEWNDWQINVLS 336 (678)
Q Consensus 298 GHLT~IAN~Lv~~~~~-~~~I~~~L~~n~~W~~Fv~~~L~ 336 (678)
-||-.|-++..+.... ++.| .|+.-+-|-.|.+..+.
T Consensus 252 phl~~IveyML~~tqd~dE~V--ALEACEFwla~aeqpi~ 289 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENV--ALEACEFWLALAEQPIC 289 (885)
T ss_pred cchHHHHHHHHHHccCcchhH--HHHHHHHHHHHhcCcCc
Confidence 5777788877765432 2322 23444778888776543
No 23
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=49.19 E-value=48 Score=37.76 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=40.2
Q ss_pred hHHHHHHHHhccCCCCCcChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHH
Q 005765 18 SIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSI 76 (678)
Q Consensus 18 aImDlLLRLIt~de~~~~~~~~il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceI 76 (678)
.+-||+||.+.+.+-+ ..+..=+-++++|-||+++|++....|+. +|+.|
T Consensus 151 lvye~~Lrf~~sp~~d----~~vaK~yid~~FvlkLLdLFdSEDpRERe-----~LKT~ 200 (457)
T KOG2085|consen 151 LVYEFLLRFLESPDFD----PSVAKKYIDQKFVLKLLDLFDSEDPRERE-----FLKTI 200 (457)
T ss_pred HHHHHHHHHHhCcccC----HHHHHHHhhHHHHHHHHHHhcCCChHHHH-----HHHHH
Confidence 4789999999887753 34667778899999999999999888886 55554
No 24
>PF05536 Neurochondrin: Neurochondrin
Probab=47.86 E-value=5.2e+02 Score=30.47 Aligned_cols=145 Identities=17% Similarity=0.221 Sum_probs=87.8
Q ss_pred HHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCChhHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhhhccCccCCC
Q 005765 49 VLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLT 128 (678)
Q Consensus 49 LIerLId~L~ps~s~evhsNAaeiLceIIr~sPn~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI~LLe~~r~~ 128 (678)
.|+.|++.+....+.+...-|-++|+.|... |.- ...|.....|..|+.++-+.. ..+-.++.+++.|+....
T Consensus 99 ~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G-~~aLl~~g~v~~L~ei~~~~~---~~~E~Al~lL~~Lls~~~-- 171 (543)
T PF05536_consen 99 RIPLLLEILSSSSDLETVDDALQCLLAIASS-PEG-AKALLESGAVPALCEIIPNQS---FQMEIALNLLLNLLSRLG-- 171 (543)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHh-HHHHHhcCCHHHHHHHHHhCc---chHHHHHHHHHHHHHhcc--
Confidence 4666777777666667777888888888832 222 123334467778888888743 466778888888776211
Q ss_pred CCcchhcccccccCCcccCChhhHHHHHHhHHHHHHhhcCCCcccccccccccccCCccchhHHHHHHHHHHHhcCcHHH
Q 005765 129 LGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAA 208 (678)
Q Consensus 129 ~s~y~~~~~~~~~~~~~~v~p~~L~ail~~L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa~LL~t~n~~i 208 (678)
++. ....+..+..++++|....+.. =|..|+.+++++..+|......
T Consensus 172 ---~~~----------~~~~~~~l~~il~~La~~fs~~-------------------~~~~kfell~~L~~~L~~~~~~- 218 (543)
T PF05536_consen 172 ---QKS----------WAEDSQLLHSILPSLARDFSSF-------------------HGEDKFELLEFLSAFLPRSPIL- 218 (543)
T ss_pred ---hhh----------hhhhHHHHHHHHHHHHHHHHhh-------------------ccchHHHHHHHHHHhcCcCCcc-
Confidence 110 1113344555666665544322 2456888999999999875200
Q ss_pred HHHHHHhccHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCC
Q 005765 209 EKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECK 249 (678)
Q Consensus 209 ~~eLi~~~i~~~lLdLFFkYpwNNfLH~~Ve~iI~~ILes~ 249 (678)
-.+.+.++-+...|..-|..||.++
T Consensus 219 ----------------~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 219 ----------------PLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred ----------------ccccCChhhhHHHHHHHHHHHHhcC
Confidence 1344555566666666666666554
No 25
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=47.79 E-value=65 Score=29.81 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCC--ChHHHHHH
Q 005765 189 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECK--NAPLIEHL 257 (678)
Q Consensus 189 ~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNfLH~~Ve~iI~~ILes~--n~~Li~hL 257 (678)
.|..+|++|+-|.+-+ ..+...+.+.+-+..+|+.+--=++|=|+-....=+|...+++. |..++..|
T Consensus 2 ~K~~lvrlianl~~~~-~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKN-KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4778999999999764 67889999999999999998777888888888878888887753 44555544
No 26
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.18 E-value=3.3e+02 Score=31.76 Aligned_cols=168 Identities=15% Similarity=0.256 Sum_probs=97.5
Q ss_pred HhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccC--------ChhHHhhcCCHHHHHHHHHHH--hcCC--CCccc
Q 005765 43 WIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA--------PPALAAKISSPNFIGRLFRHA--LENS--RPKSV 110 (678)
Q Consensus 43 WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~s--------Pn~Ll~~L~S~e~IeqLl~~m--L~~~--~~~S~ 110 (678)
.|-+-+-++.|+.+|.-. ..|+...+-++|.+++... ...|+..|.....+..|..++ |..+ .....
T Consensus 120 ~lveln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~g 198 (536)
T KOG2734|consen 120 ILVELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADG 198 (536)
T ss_pred HHHHhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhh
Confidence 444555566666666543 2344444557777766432 124666666666666666655 3221 11233
Q ss_pred hhhhhhhhhhccCccCCCCCcchhcccccccCCcccCChhhHHHHHHhHHHHHHhhcCCCcccccccccccccCCccchh
Q 005765 111 LVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHR 190 (678)
Q Consensus 111 LVngIsVlI~LLe~~r~~~s~y~~~~~~~~~~~~~~v~p~~L~ail~~L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~R 190 (678)
+-+.++|+-.++. ++|.+..-+..+ .|+..|..... | ..||.-.+
T Consensus 199 v~~~L~vveNlv~-----------------------~r~~~~~~~~e~--~ll~WLL~rl~--------~--k~~f~aNk 243 (536)
T KOG2734|consen 199 VHNTLAVVENLVE-----------------------VRPAICTEIVEQ--GLLSWLLKRLK--------G--KAAFDANK 243 (536)
T ss_pred hHHHHHHHHHHHh-----------------------ccHHHHHHHHHh--hHHHHHHHHHh--------c--ccCcchhH
Confidence 4444455544444 233444444444 23332221111 1 23666677
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCc-------hhHHHHHHHHHHHhc
Q 005765 191 LKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNN-------FLHHHVENIILSCLE 247 (678)
Q Consensus 191 LKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNN-------fLH~~Ve~iI~~ILe 247 (678)
+=-.|+++.||+.++. -...+-..+-+..+|.-.--|-|++ -+-..+|+|+-+++-
T Consensus 244 ~YasEiLaillq~s~e-~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm 306 (536)
T KOG2734|consen 244 QYASEILAILLQNSDE-NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM 306 (536)
T ss_pred HHHHHHHHHHhccCch-hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc
Confidence 7789999999999886 3455666788889999999999997 356677888877763
No 27
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=44.98 E-value=2.8e+02 Score=31.34 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=57.2
Q ss_pred HHHHHHHhcCcchHHHHHHHHhccCCCCCcChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCChhHH
Q 005765 6 IMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALA 85 (678)
Q Consensus 6 iVd~LLKHI~tsaImDlLLRLIt~de~~~~~~~~il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~sPn~Ll 85 (678)
+++.-..| ..-|-++|+|+|..-.... ..=+-++++|.+|+..|++....|+. -+-.+|..|...-++ .
T Consensus 99 ~~e~~WpH--L~~vY~il~~~i~~~~~~~------~~~~i~~~fi~~Ll~l~~S~D~rER~-~lk~~l~~iy~k~~~--~ 167 (409)
T PF01603_consen 99 FLEPSWPH--LQLVYEILLRFIESPPFDP------AKKYIDQKFIKKLLELFDSPDPRERD-YLKTILHRIYGKFPN--L 167 (409)
T ss_dssp ---TTHHH--HHHHHHHHHHHHTSTT--C------CTTTS-HHHHHHHHHTTTSSTHHHHH-HHHHHHHHHHHH-TT--T
T ss_pred ccccccHh--HHHHHHHHHHHHHCccccH------HHHHcCHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHhhh--h
Confidence 34444566 3568899999999865421 11233578999999999997777776 555666666643211 1
Q ss_pred hhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhhhccC
Q 005765 86 AKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLD 123 (678)
Q Consensus 86 ~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI~LLe 123 (678)
|..-.......|++.+.+..+ -..+.-.+.|+-+++.
T Consensus 168 r~~Ir~~i~~~~~~fi~e~~~-~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 168 RSFIRKSINNIFYRFIYETER-HNGIAELLEILGSIIN 204 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTTS---STHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCccc-ccCHHHHHHHHHHHHh
Confidence 222222444556666665542 3333334444444444
No 28
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=44.75 E-value=2.6e+02 Score=30.49 Aligned_cols=43 Identities=14% Similarity=0.301 Sum_probs=36.6
Q ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCch
Q 005765 188 KHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNF 233 (678)
Q Consensus 188 ~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNf 233 (678)
..|-.-|+|+.++|...+..+...|+..+-+ +.-+|+|-...=
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~---~~~l~k~l~~D~ 171 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKL---MSALFKGLRKDP 171 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCch---HHHHHhcccCCC
Confidence 8999999999999999999999999988655 667777766643
No 29
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.98 E-value=6.3e+02 Score=29.86 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=64.1
Q ss_pred ChhhHHHHHH--hHHHHHHhhcCCCcccccccccccccCCccchhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHH
Q 005765 148 NPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLF 225 (678)
Q Consensus 148 ~p~~L~ail~--~L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLF 225 (678)
+++-+.++.. -++.++.+|..... ..|-..+--|.-+...+++.-...|++.|+++-+.+|+
T Consensus 353 ~~~qiqaVida~l~p~Li~~l~~~ef----------------~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL 416 (514)
T KOG0166|consen 353 NQEQIQAVIDANLIPVLINLLQTAEF----------------DIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL 416 (514)
T ss_pred CHHHHHHHHHcccHHHHHHHHhccch----------------HHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc
Confidence 3444444433 46666777764332 36777888899999999999999999999999999998
Q ss_pred hhcCCCchhHHHHHHHHHHHhcC----CCh--HHHHHHhhhccHHHHH
Q 005765 226 FEYPYNNFLHHHVENIILSCLEC----KNA--PLIEHLLHECNLVGKI 267 (678)
Q Consensus 226 FkYpwNNfLH~~Ve~iI~~ILes----~n~--~Li~hLF~dc~Li~rI 267 (678)
.++=.-. =.++.+.+..||.- ++. ..+.-++++|.-+++|
T Consensus 417 -~~~D~~i-i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldki 462 (514)
T KOG0166|consen 417 -TCPDVKI-ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKI 462 (514)
T ss_pred -cCCChHH-HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHH
Confidence 4443322 45555555555531 110 3344455555555544
No 30
>PHA02030 hypothetical protein
Probab=42.96 E-value=78 Score=34.60 Aligned_cols=8 Identities=38% Similarity=0.879 Sum_probs=4.9
Q ss_pred cccccCCc
Q 005765 433 SLFTNSNW 440 (678)
Q Consensus 433 ~~~~~~~~ 440 (678)
-+|--|||
T Consensus 128 k~Fd~Mn~ 135 (336)
T PHA02030 128 LAFDKMNW 135 (336)
T ss_pred HHHHHhcc
Confidence 45666666
No 31
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=41.01 E-value=58 Score=37.64 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=58.8
Q ss_pred chHHHHHHHHhcC-------cchHHHHHHHHhccCCCCC------cChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhH
Q 005765 3 HQEIMARLVDLIG-------ITSIMEVLIRLIGADEHMY------TNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANA 69 (678)
Q Consensus 3 ~p~iVd~LLKHI~-------tsaImDlLLRLIt~de~~~------~~~~~il~WL~Eq~LIerLId~L~ps~s~evhsNA 69 (678)
.+++|.+|++.+. .++++|+|.-||+.-.+.. ..+..+..-|..+..|++|++.+-..+......|+
T Consensus 60 ~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~ 139 (475)
T PF04499_consen 60 EQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNG 139 (475)
T ss_pred HhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHH
Confidence 4678889999887 3468899988887754311 12346788899999999999997653336677799
Q ss_pred HHHHHHHHccC
Q 005765 70 AETLCSITRSA 80 (678)
Q Consensus 70 aeiLceIIr~s 80 (678)
..+|.++||..
T Consensus 140 v~IlieLIRkn 150 (475)
T PF04499_consen 140 VSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 32
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=38.37 E-value=1.6e+02 Score=28.44 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhh---cCCCc----hhHHHHHHHHHHHhcCCChHHHHHHhhhccHH
Q 005765 192 KIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFE---YPYNN----FLHHHVENIILSCLECKNAPLIEHLLHECNLV 264 (678)
Q Consensus 192 KIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFk---YpwNN----fLH~~Ve~iI~~ILes~n~~Li~hLF~dc~Li 264 (678)
+++.=+.+.|+++.....+++++.|=+..|++++-+ +.+.+ .+++.+..|+.+|++.. .=+.+++.....+
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~--~G~~~v~~~~~~v 160 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK--YGLEAVLSHPDSV 160 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH--HHHHHHHCSSSHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH--HHHHHHHcCcHHH
Confidence 788888899999999999999998866666665544 44445 77888889999999653 3367788888888
Q ss_pred HHHHHh
Q 005765 265 GKILEA 270 (678)
Q Consensus 265 ~rILea 270 (678)
..|..+
T Consensus 161 ~~i~~~ 166 (187)
T PF06371_consen 161 NLIALS 166 (187)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877765
No 33
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=37.97 E-value=68 Score=32.03 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=39.1
Q ss_pred HHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCCh----hHHhhcCCHHH
Q 005765 40 SMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPP----ALAAKISSPNF 93 (678)
Q Consensus 40 il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~sPn----~Ll~~L~S~e~ 93 (678)
..++..++==+++|+..|.. .+.+++.||--+|.++...+++ .+++.|.+...
T Consensus 94 ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~k~~ 150 (160)
T PF11841_consen 94 LYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLKADDSKRKEIAETLSQKQI 150 (160)
T ss_pred HHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 34555555558888888877 6779999999999999977743 56677766554
No 34
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=37.14 E-value=66 Score=37.74 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=4.8
Q ss_pred HHHHHHHHhhc
Q 005765 218 VRRILDLFFEY 228 (678)
Q Consensus 218 ~~~lLdLFFkY 228 (678)
+++-+|.|-+|
T Consensus 70 ~q~s~d~y~kY 80 (574)
T PF07462_consen 70 IQVSLDHYGKY 80 (574)
T ss_pred HHhhhhhhhhH
Confidence 33444444444
No 35
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=34.06 E-value=2.7e+02 Score=32.27 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=10.3
Q ss_pred hhHHHHHHhHHHHHH
Q 005765 150 ETVEGMLGRLGDLLK 164 (678)
Q Consensus 150 ~~L~ail~~L~df~~ 164 (678)
..|+.++-|++.|+.
T Consensus 136 l~lGqaiGRiGnF~N 150 (460)
T PRK13108 136 VVLAQAIGRLGNYFN 150 (460)
T ss_pred HHHHHHHHHHHHHhc
Confidence 455666778888773
No 36
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=33.95 E-value=3.3e+02 Score=33.69 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=17.1
Q ss_pred hHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccC
Q 005765 48 NVLEMIVDKFSSSDSPEVHANAAETLCSITRSA 80 (678)
Q Consensus 48 ~LIerLId~L~ps~s~evhsNAaeiLceIIr~s 80 (678)
+.|+++++. ...+++...+-+++-.+..++
T Consensus 454 r~LQk~Lds---~s~~~~~~~~~e~~d~~~eLs 483 (777)
T COG5099 454 RFLQKLLDS---NSSPEIEVIFNEILDQLVELS 483 (777)
T ss_pred HHHHHHhcc---cchHHHHHHHHHHhhhhHHHH
Confidence 467777776 334455555555555555554
No 37
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=33.63 E-value=8.8e+02 Score=29.47 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhccHHHHH
Q 005765 188 KHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKI 267 (678)
Q Consensus 188 ~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNfLH~~Ve~iI~~ILes~n~~Li~hLF~dc~Li~rI 267 (678)
.+|+.++-|+..++++.-.-+.+ |++..+|..||... +|..+-..-....-++..+|=.-...|..||..=..+..||
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~-i~~t~Lf~~LLk~L-~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYK-ILQTPLFKSLLKCL-QFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRL 160 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHH-HhcChhHHHHHHHH-hhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 58999999999999998776654 57888998888865 55555443333333444455333345566666666788888
Q ss_pred HHhhh
Q 005765 268 LEAEK 272 (678)
Q Consensus 268 Lea~k 272 (678)
+ .|+
T Consensus 161 ~-~W~ 164 (668)
T PF04388_consen 161 L-SWE 164 (668)
T ss_pred H-Hcc
Confidence 8 454
No 38
>PHA03247 large tegument protein UL36; Provisional
Probab=32.64 E-value=1.1e+02 Score=42.12 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=13.8
Q ss_pred eeecccccCCcCCCcccccCCcccccc
Q 005765 419 VISSLRLGDDQESGSLFTNSNWFAFED 445 (678)
Q Consensus 419 ~~ss~r~~~~~~~~~~~~~~~~~~~~~ 445 (678)
+|+.--++..-..++||.--.-|.+-+
T Consensus 2458 ~i~g~~~~~~~~~~~~y~~~p~f~~~~ 2484 (3151)
T PHA03247 2458 TILGAPFSLSLLLGELFPGAPVYRRPA 2484 (3151)
T ss_pred eecCCCCCchhhccccCCCCccccCCC
Confidence 555544444444566774444455443
No 39
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=31.66 E-value=4.1e+02 Score=29.88 Aligned_cols=43 Identities=21% Similarity=0.481 Sum_probs=36.5
Q ss_pred ccCCccchhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHh
Q 005765 182 LQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFF 226 (678)
Q Consensus 182 l~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFF 226 (678)
...+++..=.++++|+..+++ |......+++.|-+..+|+|+.
T Consensus 329 ~~~~l~~YI~~v~rFLea~fs--N~~~C~~FVe~GGie~LLdLl~ 371 (379)
T PF06025_consen 329 PELPLTDYIFNVVRFLEAFFS--NSDHCREFVEKGGIELLLDLLT 371 (379)
T ss_pred ccCcHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHc
Confidence 345778888899999999996 4678899999999999999863
No 40
>PHA03264 envelope glycoprotein D; Provisional
Probab=30.26 E-value=1.1e+02 Score=34.39 Aligned_cols=7 Identities=29% Similarity=0.691 Sum_probs=3.4
Q ss_pred Ccccccc
Q 005765 439 NWFAFED 445 (678)
Q Consensus 439 ~~~~~~~ 445 (678)
-||++-+
T Consensus 197 C~FSk~~ 203 (416)
T PHA03264 197 CWFSKLG 203 (416)
T ss_pred ccccccc
Confidence 4555543
No 41
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.20 E-value=4.3e+02 Score=30.27 Aligned_cols=218 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCcch-----HHHHHHHHhccCCCCCcChhhHHHHhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHc
Q 005765 4 QEIMARLVDLIGITS-----IMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR 78 (678)
Q Consensus 4 p~iVd~LLKHI~tsa-----ImDlLLRLIt~de~~~~~~~~il~WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr 78 (678)
|.+|..|+..++.++ .+-+-||.+..|+. | +.=.-+.+-|+.|+.+| +++-.-.-++.+.| |-.
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Y------q~eiv~ag~lP~lv~Ll---qs~~~plilasVaC-Irn 318 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-Y------QREIVEAGSLPLLVELL---QSPMGPLILASVAC-IRN 318 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-h------hhHHHhcCCchHHHHHH---hCcchhHHHHHHHH-Hhh
Q ss_pred cCChhHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhhhccCccCCCCCcchhcccccccCCcccCChhhHHHHHHh
Q 005765 79 SAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGR 158 (678)
Q Consensus 79 ~sPn~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI~LLe~~r~~~s~y~~~~~~~~~~~~~~v~p~~L~ail~~ 158 (678)
++=.|+-..|.-..-.-+=+-.+|....++-.-.++++++-.|--..+++.+.+-.-+ .
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg---------------------A 377 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG---------------------A 377 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC---------------------c
Q ss_pred HHHHHHhhcCCCcccccccccccccCCccchhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCchhHHHH
Q 005765 159 LGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHV 238 (678)
Q Consensus 159 L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNfLH~~V 238 (678)
++++..||...|-. .|=.|---|++|-...+ -+..|.+.|+++.++.+-+.
T Consensus 378 i~kl~eL~lD~pvs----------------vqseisac~a~Lal~d~--~k~~lld~gi~~iLIp~t~s----------- 428 (550)
T KOG4224|consen 378 IPKLIELLLDGPVS----------------VQSEISACIAQLALNDN--DKEALLDSGIIPILIPWTGS----------- 428 (550)
T ss_pred hHHHHHHHhcCChh----------------HHHHHHHHHHHHHhccc--cHHHHhhcCCcceeecccCc-----------
Q ss_pred HHHHHHHhcCCChHHHHHHhhhccHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCchHHHHHHH
Q 005765 239 ENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRI 303 (678)
Q Consensus 239 e~iI~~ILes~n~~Li~hLF~dc~Li~rILea~k~~~~~~~nk~t~~~egk~~~R~GYMGHLT~I 303 (678)
...=+.++...-+..|=.+.+=..|++++|. .+-.|..|+|.||
T Consensus 429 ---~s~Ev~gNaAaAL~Nlss~v~~YarviEawd------------------~P~~gi~g~L~Rf 472 (550)
T KOG4224|consen 429 ---ESEEVRGNAAAALINLSSDVEHYARVIEAWD------------------HPVQGIQGRLARF 472 (550)
T ss_pred ---cchhhcccHHHHHHhhhhhhHHHHHHHHHhc------------------CcchhHHHHHHHH
No 42
>PHA03247 large tegument protein UL36; Provisional
Probab=29.73 E-value=1.5e+02 Score=41.05 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHhcCc
Q 005765 189 HRLKIVEFISVLLTVGS 205 (678)
Q Consensus 189 ~RLKIvELIa~LL~t~n 205 (678)
.+|.+..++..|+.|.-
T Consensus 2085 v~lt~~Dvmv~lva~~P 2101 (3151)
T PHA03247 2085 VTFNENDVMVALVAGTP 2101 (3151)
T ss_pred eeecHHHHHHHHHhcCc
Confidence 34445555555555543
No 43
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=29.38 E-value=1.2e+02 Score=35.79 Aligned_cols=10 Identities=50% Similarity=0.561 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 005765 300 LTRISNKLIQ 309 (678)
Q Consensus 300 LT~IAN~Lv~ 309 (678)
||.+-+.|.+
T Consensus 104 lt~lK~~L~~ 113 (574)
T PF07462_consen 104 LTILKNKLER 113 (574)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 44
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=28.99 E-value=1.1e+02 Score=33.24 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=67.8
Q ss_pred CccchhHHHHHHHHHHHhcCcHHHH--------HHHHHhccHHHHHHHHhhcCCCchh-HHHHHHHHHHHhcCC------
Q 005765 185 PLGKHRLKIVEFISVLLTVGSEAAE--------KELIRHGAVRRILDLFFEYPYNNFL-HHHVENIILSCLECK------ 249 (678)
Q Consensus 185 PLG~~RLKIvELIa~LL~t~n~~i~--------~eLi~~~i~~~lLdLFFkYpwNNfL-H~~Ve~iI~~ILes~------ 249 (678)
-+|..|-.|.-++.+++..+-..|. +.+.+ .++.-|=+---+|||++-. |.-=+.|+|+||..+
T Consensus 4 ~l~esr~ell~w~N~v~~L~l~rIEdcg~g~am~qI~d-siY~Dlp~~~V~f~~~aey~~~~n~kILq~~Fs~~Gidk~v 82 (342)
T COG5217 4 ALVESREELLFWENVVVRLDLQRIEDCGEGFAMQQIHD-SIYVDLPDSLVRFPWIAEYKHPGNGKILQLLFSDYGIDKAV 82 (342)
T ss_pred hhhhhHHHHHHHHHHHhhcCceehhhhccchhHHHHHH-HHhccCcHhhccccchhheecCCchhHHHHHHHhcCcchhh
Confidence 4667777788888888877654221 12211 1222222334589999876 555689999999643
Q ss_pred -ChHHHHH-HhhhccHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCchHHHH-HH-HHHHHHHh
Q 005765 250 -NAPLIEH-LLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHL-TR-ISNKLIQL 310 (678)
Q Consensus 250 -n~~Li~h-LF~dc~Li~rILea~k~~~~~~~nk~t~~~egk~~~R~GYMGHL-T~-IAN~Lv~~ 310 (678)
...|+.- |...-.|++.+.+.|-.+. +-.. .+ ...|++|||-. || .++.+...
T Consensus 83 ~v~~lvrck~qdnLeflQwlk~hWvr~~------~~~~-yd-~~arr~~r~p~~tr~~~~~~rs~ 139 (342)
T COG5217 83 LVLVLVRCKLQDNLEFLQWLKDHWVRNL------GHIS-YD-RNARRLGRTPKSTRELIEWIRSL 139 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhC------CCCc-cC-hhHHhcCCCcchHHHHHhhhhhc
Confidence 2223322 2223568899999986542 2121 22 25688888654 55 56655544
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.12 E-value=1.4e+02 Score=37.07 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=37.5
Q ss_pred cCCccchhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCC
Q 005765 183 QPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPY 230 (678)
Q Consensus 183 ~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpw 230 (678)
.++|..--+..+=.+..++.++.+-....|..++|..++.++|-.|--
T Consensus 393 ~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 393 PTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred cccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 345555555555566778888888889999999999999999998853
No 46
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=27.37 E-value=4.8e+02 Score=29.33 Aligned_cols=183 Identities=15% Similarity=0.239 Sum_probs=99.7
Q ss_pred HHhhh--hhHHHHHHHhhC-CCCCHHHHHhHHHHHHHHHccCChhHHhhcCCHHHHHHHHHHHhcCC--CCccchhhhhh
Q 005765 42 QWIED--TNVLEMIVDKFS-SSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENS--RPKSVLVNSLS 116 (678)
Q Consensus 42 ~WL~E--q~LIerLId~L~-ps~s~evhsNAaeiLceIIr~sPn~Ll~~L~S~e~IeqLl~~mL~~~--~~~S~LVngIs 116 (678)
.|+.+ ..+|+++.=... |+.+-|...| ++|.||..+|- .+ -.+.|.+++..+-+.. ...|..+..++
T Consensus 39 kgl~~~l~~ii~~c~v~~k~~ekdle~vln---si~sLi~~~~~---e~--~e~~v~a~~ekva~q~n~~~~~l~L~vLs 110 (378)
T KOG2753|consen 39 KGLEEDLLMIIEACDVLAKIPEKDLECVLN---SIVSLIKNAPP---EK--VEEMVKAICEKVAKQPNDKTASLRLQVLS 110 (378)
T ss_pred cCHHHHHHHHHHHhHHhhcCCcchHHHHHH---HHHHHHHhCCH---HH--hHHHHHHHHHHHhcCccCCCcccHHHHHH
Confidence 46666 345555543333 4455555555 78888876641 11 2356667777765432 23567777778
Q ss_pred hhhhccCccCCCCCcchhcccccccCCcccCChhhHHHHHHhHHHHHHhhcCCCcccccccccccccCCccchhHHHHHH
Q 005765 117 ICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEF 196 (678)
Q Consensus 117 VlI~LLe~~r~~~s~y~~~~~~~~~~~~~~v~p~~L~ail~~L~df~~LL~~~~~~~~l~TT~G~l~pPLG~~RLKIvEL 196 (678)
.++...++.++ ..|+.|-..+. .+++-..++.+.+.|+.|-.-|.. |+ ++.-..| ++.++
T Consensus 111 nLfn~~d~~~~--aR~~Vy~~lv~----la~~~~~~~~i~~~lk~~~~~lke----------w~---~~vedqr-el~r~ 170 (378)
T KOG2753|consen 111 NLFNGVDKPTP--ARYQVYMSLVT----LAASCKLIEYIVPNLKQLDDWLKE----------WN---ISVEDQR-ELLRA 170 (378)
T ss_pred HHHhccCCCch--HHHHHHHHHHH----HHhhcceeeeecccHHHHHHHHHh----------CC---CCHHHHH-HHHHH
Confidence 88887775433 45555533211 112223444556666665555542 22 1222333 45556
Q ss_pred HHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCchh--HHHHHHHHHHHhcCCChHHHHHHhh
Q 005765 197 ISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFL--HHHVENIILSCLECKNAPLIEHLLH 259 (678)
Q Consensus 197 Ia~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNfL--H~~Ve~iI~~ILes~n~~Li~hLF~ 259 (678)
++-.|+.++. +.. ..+++..|.-.|.--|.= .--+-+||+..+...+.++..||+.
T Consensus 171 v~~al~~~k~-~~~------s~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP~~F~fD~Ll~ 228 (378)
T KOG2753|consen 171 VHKALKDNKS-VDE------SSKVMTELLGTYTEDNASEAREDAMRCVVEAVKDPKIFLFDHLLT 228 (378)
T ss_pred HHHHHHhcch-hhh------HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCceeccchhcc
Confidence 6555554432 111 456667777777777722 2234467777777777777777765
No 47
>PHA03169 hypothetical protein; Provisional
Probab=26.41 E-value=3.8e+02 Score=30.42 Aligned_cols=6 Identities=50% Similarity=0.783 Sum_probs=2.4
Q ss_pred CCCCCC
Q 005765 633 EPSESV 638 (678)
Q Consensus 633 ~~~~~~ 638 (678)
++|++.
T Consensus 210 ~~ge~~ 215 (413)
T PHA03169 210 EPGEPQ 215 (413)
T ss_pred CCCCCC
Confidence 334433
No 48
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=24.35 E-value=1.2e+02 Score=26.12 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=47.7
Q ss_pred hhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHHccCChhHHhhcCCHHHHHHHHHHHhcCCCCccchhhhhhhhhhccC
Q 005765 46 DTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLD 123 (678)
Q Consensus 46 Eq~LIerLId~L~ps~s~evhsNAaeiLceIIr~sPn~Ll~~L~S~e~IeqLl~~mL~~~~~~S~LVngIsVlI~LLe 123 (678)
++++|+.|+++|.... .+...++...|..+...++ +....+.....+..|++.+-.. +..+..+++.++..|..
T Consensus 5 ~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 5 QAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAA 78 (120)
T ss_pred HcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHcc
Confidence 5678999999998654 6778888899988887653 3333333446666677665443 23444555566665544
No 49
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=24.21 E-value=1.4e+02 Score=21.14 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=27.0
Q ss_pred HhhhhhHHHHHHHhhCCCCCHHHHHhHHHHHHHHH
Q 005765 43 WIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSIT 77 (678)
Q Consensus 43 WL~Eq~LIerLId~L~ps~s~evhsNAaeiLceII 77 (678)
-+.+.+.|+.|+.+|. +.+.+++.+|+..|..|.
T Consensus 7 ~i~~~g~i~~L~~ll~-~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 7 AVVDAGGLPALVELLK-SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHc
Confidence 3456778999999988 557888999998888774
No 50
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=24.10 E-value=8.6e+02 Score=27.34 Aligned_cols=81 Identities=12% Similarity=0.242 Sum_probs=49.4
Q ss_pred chHHHHHHHHhccCCCCCcChhhHHHHhhh-hhHHHHHHHhhCCC--CCHHHHHhHHHHHHHHHccCChhHHhhcCCHHH
Q 005765 17 TSIMEVLIRLIGADEHMYTNFTESMQWIED-TNVLEMIVDKFSSS--DSPEVHANAAETLCSITRSAPPALAAKISSPNF 93 (678)
Q Consensus 17 saImDlLLRLIt~de~~~~~~~~il~WL~E-q~LIerLId~L~ps--~s~evhsNAaeiLceIIr~sPn~Ll~~L~S~e~ 93 (678)
++++-+|.+++.. .+ ...+.+.=|-+ ..|+.-|..+|... +-..+.++|..+++++|..-|. .+..|.....
T Consensus 78 K~lLk~l~~~~~~-~~---~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT-~~~~l~e~Gl 152 (379)
T PF06025_consen 78 KSLLKFLSHAMQH-SG---GFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPT-SFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHhcc-CC---CcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCc-hhHHHHHcCC
Confidence 3456667777762 11 11233444555 77888887777654 6778888999999998877653 2333444445
Q ss_pred HHHHHHHHh
Q 005765 94 IGRLFRHAL 102 (678)
Q Consensus 94 IeqLl~~mL 102 (678)
+..||+.+.
T Consensus 153 ~~~~L~~i~ 161 (379)
T PF06025_consen 153 IDAFLDAIT 161 (379)
T ss_pred hHHHHHHHh
Confidence 555666555
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.64 E-value=8.6e+02 Score=30.47 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-CCChHHHHHHhhhccHHHHH
Q 005765 189 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE-CKNAPLIEHLLHECNLVGKI 267 (678)
Q Consensus 189 ~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFFkYpwNNfLH~~Ve~iI~~ILe-s~n~~Li~hLF~dc~Li~rI 267 (678)
.|-..+-|+.+|.+.+ ..|.+-++=.++|.+++++.-+-+-- ==-.+|++|+.-+.+ -+++..-..+|+....|.|+
T Consensus 182 IRNe~iLlL~eL~k~n-~~IQKlVAFENaFerLfsIIeeEGg~-dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL 259 (970)
T KOG0946|consen 182 IRNEAILLLSELVKDN-SSIQKLVAFENAFERLFSIIEEEGGL-DGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL 259 (970)
T ss_pred hchhHHHHHHHHHccC-chHHHHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence 3556677888888775 44555555568999999988775411 112578888776665 24555567789999999988
Q ss_pred HH
Q 005765 268 LE 269 (678)
Q Consensus 268 Le 269 (678)
..
T Consensus 260 ~k 261 (970)
T KOG0946|consen 260 LK 261 (970)
T ss_pred Hh
Confidence 84
No 52
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=23.52 E-value=2.6e+02 Score=34.15 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCcchHHHHHHHHhccCCCCCcChhhHHHHhhhhhHHHHHHHhhCCCCC-HHHHHhHHHHHHHHHccCChh
Q 005765 5 EIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDS-PEVHANAAETLCSITRSAPPA 83 (678)
Q Consensus 5 ~iVd~LLKHI~tsaImDlLLRLIt~de~~~~~~~~il~WL~Eq~LIerLId~L~ps~s-~evhsNAaeiLceIIr~sPn~ 83 (678)
++|..|++.+....--|+++-.+++--+......+..+.+.+.+|++-|.+.|.|... .++...+.-++-.+. . ...
T Consensus 490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla-~-d~~ 567 (708)
T PF05804_consen 490 DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA-S-DPE 567 (708)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-C-CHH
Confidence 3455555555555555565555555443211122345566778899999999988743 334433332222111 1 223
Q ss_pred HHhhcCCHHHHHHHHHHHhc
Q 005765 84 LAAKISSPNFIGRLFRHALE 103 (678)
Q Consensus 84 Ll~~L~S~e~IeqLl~~mL~ 103 (678)
.+..|.+...|..|+..+-.
T Consensus 568 ~A~lL~~sgli~~Li~LL~~ 587 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNA 587 (708)
T ss_pred HHHHHHhCChHHHHHHHHHh
Confidence 44455555566666655543
No 53
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=23.15 E-value=2.3e+02 Score=23.52 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=26.9
Q ss_pred HHHHHhccCCCCCcChhhHHHHhhh---hhHHHHHHHhhCCCCCHHHHHhHHHHHHHH
Q 005765 22 VLIRLIGADEHMYTNFTESMQWIED---TNVLEMIVDKFSSSDSPEVHANAAETLCSI 76 (678)
Q Consensus 22 lLLRLIt~de~~~~~~~~il~WL~E---q~LIerLId~L~ps~s~evhsNAaeiLceI 76 (678)
.|++++.-++..+ .+..++..|.+ .++++.|+..+. +.++.+...|+..|..|
T Consensus 3 ~L~~~l~~~~~~~-vr~~a~~~L~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 3 ALLQLLQNDPDPQ-VRAEAARALGELGDPEAIPALIELLK-DEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHTSSSHH-HHHHHHHHHHCCTHHHHHHHHHHHHT-SSSHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHc-CCCHHHHHHHHHHHHHh
Confidence 4445553333311 24444444433 456777777773 34556666666655543
No 54
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=21.88 E-value=1.5e+02 Score=32.05 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=41.1
Q ss_pred ccCCccchhHHHHHHHHHHHhcCcHHHHHHHHHhccHHHHHHHHh
Q 005765 182 LQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFF 226 (678)
Q Consensus 182 l~pPLG~~RLKIvELIa~LL~t~n~~i~~eLi~~~i~~~lLdLFF 226 (678)
...||-..||.-+-.|+.|++.+...+..-|+..++++.||...-
T Consensus 134 ~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime 178 (293)
T KOG3036|consen 134 KSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME 178 (293)
T ss_pred cCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence 356899999999999999999999999999999999999998763
No 55
>PF05616 Neisseria_TspB: Neisseria meningitidis TspB protein; InterPro: IPR008708 This family consists mainly of Neisseria meningitidis TspB virulence factor proteins.
Probab=21.44 E-value=3.4e+02 Score=31.71 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=5.9
Q ss_pred CcHHHHHHHh
Q 005765 313 NNSEIHAYLQ 322 (678)
Q Consensus 313 ~~~~I~~~L~ 322 (678)
..++++++++
T Consensus 163 r~~e~~~lm~ 172 (502)
T PF05616_consen 163 RFPEVKQLME 172 (502)
T ss_pred cCHHHHHHHH
Confidence 3456666665
No 56
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.43 E-value=3.4e+02 Score=33.50 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCcH-HHHHH---HhccccHHHHHHH
Q 005765 299 HLTRISNKLIQLGNNNS-EIHAY---LQENSEWNDWQIN 333 (678)
Q Consensus 299 HLT~IAN~Lv~~~~~~~-~I~~~---L~~n~~W~~Fv~~ 333 (678)
..+.|||.+++.+..+. ++++= |..-..|.+|..+
T Consensus 324 ~A~~iAN~fMh~GTT~D~FlR~NL~WlskAtNWaKFtAt 362 (929)
T KOG2062|consen 324 TATLIANAFMHAGTTSDTFLRNNLDWLSKATNWAKFTAT 362 (929)
T ss_pred HHHHHHHHHHhcCCcchHHHHhchhHHhhcchHhhhhhh
Confidence 34779999999886543 23222 2223789999775
No 57
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=21.32 E-value=1.1e+03 Score=28.39 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhcCCCh
Q 005765 235 HHHVENIILSCLECKNA 251 (678)
Q Consensus 235 H~~Ve~iI~~ILes~n~ 251 (678)
-..||..+.+++|++..
T Consensus 213 ft~vyaALvAviNskfP 229 (739)
T KOG2140|consen 213 FTPVYAALVAVINSKFP 229 (739)
T ss_pred CcHHHHHHHHHHccCCc
Confidence 34566667777776543
No 58
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=20.43 E-value=2.1e+02 Score=33.96 Aligned_cols=57 Identities=26% Similarity=0.486 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCch
Q 005765 593 SKPSEPSESGSPSE-PAESG-TPSEPAESGTPSEPAESGTPSEPSE---SVDGNHPSSDPAA 649 (678)
Q Consensus 593 ~~p~~~~~~~~p~~-p~~p~-~p~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 649 (678)
+-|..|+-.|.|-+ ||..+ .||+-+..-+.-+|-+.|.|+++-| --.||...+.+.+
T Consensus 509 ~pp~gp~asg~PPkgPG~s~~~~GehEdSkeskePKe~g~p~~~KE~~~gKKPGpaKehkPs 570 (943)
T PTZ00449 509 EPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPS 570 (943)
T ss_pred CCCCCCccCCCCCCCCCcCCCCCCccCCcccCCCccccCCCCCCcccccCCCCCCcCCCCCc
No 59
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=20.29 E-value=2.1e+02 Score=29.32 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=37.8
Q ss_pred cChhhHHHHhhhh-hHHHHHHHhhCC-CCCHHHHHhHHHHHHHHHccC
Q 005765 35 TNFTESMQWIEDT-NVLEMIVDKFSS-SDSPEVHANAAETLCSITRSA 80 (678)
Q Consensus 35 ~~~~~il~WL~Eq-~LIerLId~L~p-s~s~evhsNAaeiLceIIr~s 80 (678)
-+..+|+++|.+. .++++|.+.+.. ..+.+......-+|.+++.++
T Consensus 131 ~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~~r~d~v~fL~e~c~~a 178 (193)
T PF04802_consen 131 FNQVEIVNMLQDDENFLEELFAILKDPSTSDERRRDGVKFLHEFCSLA 178 (193)
T ss_pred HhHHHHHHHHHhCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999885 599999999954 467788889999999998765
No 60
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=20.17 E-value=2e+02 Score=23.87 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=9.2
Q ss_pred hHHHHHHHhhCCCCCHHHHHhHH
Q 005765 48 NVLEMIVDKFSSSDSPEVHANAA 70 (678)
Q Consensus 48 ~LIerLId~L~ps~s~evhsNAa 70 (678)
+.++.|++.+..+.+..++..|+
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~ 84 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAA 84 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHH
Confidence 34444444444443333333333
Done!