RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 005766
(678 letters)
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 461 bits (1189), Expect = e-151
Identities = 136/336 (40%), Positives = 190/336 (56%), Gaps = 38/336 (11%)
Query: 1 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 60
F+R GV D+N+PY+TL PEYEAAQI +FG+M+ +G IY+GKKPV+WSPSS ++LAE
Sbjct: 136 KKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAE 195
Query: 61 AELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 120
AE+EY + S SIY F + D +WTTTPWT+P+N A+ V+
Sbjct: 196 AEIEYHD-KRSASIYVAFNVKDDK-------GVVDADAKFIIWTTTPWTIPSNVAITVHP 247
Query: 121 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG---TKL 177
+L+Y + G+ I+A L + +
Sbjct: 248 ELKYGQYNV----NGE---------------------KYIIAEALSDAVAEALDWDKASI 282
Query: 178 VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKY 237
++K G +LE HP +R+ VI GD++TT++GTG VHTAPGHG++DY+ +Y
Sbjct: 283 KLEKEYTGKELEWVVAQHPFLDRESL-VINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQY 341
Query: 238 GLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRT 297
LP++SP+DD+G FTEE G+F G+ N AV L E+ +L+ + H YP+DWRT
Sbjct: 342 ELPVISPIDDKGVFTEEGGQFEGMFYD-KANKAVTDLLTEKGALLKLDFITHSYPHDWRT 400
Query: 298 KKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 333
KKP IFRAT QWFAS+ RQ +DAI +
Sbjct: 401 KKPVIFRATPQWFASISKVRQDILDAIENTNFKVNW 436
Score = 405 bits (1043), Expect = e-130
Identities = 126/340 (37%), Positives = 181/340 (53%), Gaps = 31/340 (9%)
Query: 330 VPPQE-APGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWR 388
+ P + GAD+ RLWVSS DY DV I ++L+Q SD YRK+R TLR++LGN++D+
Sbjct: 604 IVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFN 663
Query: 389 -VGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDV 447
+SI +L +D+Y L +L + +YE++ + I+Q +Q FI V+LSNFY D
Sbjct: 664 PDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDY 723
Query: 448 AKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAA 507
KD LY S RRS QTVL L+ + +++APIL H AE+VW + P
Sbjct: 724 GKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTP-------HVKE 776
Query: 508 EFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLF 567
E V + P + E + W + LR +VN+ LE AR K+IG SLEAKV +
Sbjct: 777 ESVHLADMPKVVEVDQALLD----KWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIA 832
Query: 568 TDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKV 627
++D AS D L ++FI+SQV+V+ + +
Sbjct: 833 SNDKFNASEFLT------SFDALHQLFIVSQVKVVDKLDDQ------------ATAYEHG 874
Query: 628 WIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 667
I + A+G KCERCWNYS +G+ E LC RC +V+
Sbjct: 875 DIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVK 914
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 345 bits (887), Expect = e-108
Identities = 99/332 (29%), Positives = 140/332 (42%), Gaps = 43/332 (12%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
+R W D + Y TL+P Y + + +G +YR K V + P T L+ E+
Sbjct: 134 TERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193
Query: 64 E--YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAK 121
Y E S+Y F + L L +WTTTPWT+P N A AV+ +
Sbjct: 194 ALGYKE-IQDPSVYVRFPLKEPKKLG-------LEKASLLIWTTTPWTLPGNVAAAVHPE 245
Query: 122 LQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKK 181
YA + +I+ L L + + K
Sbjct: 246 YTYAAFQ-------------------------VGDEALILEEGLGRKLLGE---GTQVLK 277
Query: 182 TLAGSDLENCRYVHPVDNR--QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL 239
T G LE Y P + V+ DY++ E GTG+VH AP G ED T+ YGL
Sbjct: 278 TFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL 337
Query: 240 PILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKK 299
P+L VD+EGK E F GL + N A+++ L + L EE Y H YP+ WR
Sbjct: 338 PLLKTVDEEGKLLVEP--FKGLYFR-EANRAILRDLRGRGLLFKEESYLHSYPHCWRCST 394
Query: 300 PTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 331
P ++ ATE WF F+ + ++ WVP
Sbjct: 395 PLMYYATESWFIKNTLFKDELIRNNQEIHWVP 426
Score = 162 bits (413), Expect = 5e-42
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 8/190 (4%)
Query: 338 YGADVLRLWV-SSVDYTGDVMIGPQVLRQM-SDIYRKLRGTLRYLL--GNLHDWRVGNSI 393
+GAD LR ++ S D GP ++R+ D + L + + NL + N
Sbjct: 609 FGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP 668
Query: 394 SYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLY 453
+ P +D++ L +++++++ + E+ E+Y + ++ F++ DLS +Y + R +
Sbjct: 669 PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFW 728
Query: 454 TGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 513
R + L L+ + + AP P LAE +WQNL A E V +
Sbjct: 729 KNEDAL-DREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLV---RSVRLEAKESVHLA 784
Query: 514 KWPVLDEKWR 523
WP D
Sbjct: 785 DWPEADPALA 794
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 194 bits (495), Expect = 2e-58
Identities = 67/222 (30%), Positives = 90/222 (40%), Gaps = 42/222 (18%)
Query: 71 SRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQ 130
S+Y F + L L +WTTTPWT+P N A AV+ + YA
Sbjct: 3 DPSVYVRFPLKEPK-------KLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAF--- 52
Query: 131 SLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLEN 190
+ + I + L L G + KT G LE
Sbjct: 53 ---------------------QVGDEALI-LEEGLGRKL---LGEGTPVLKTFPGKALEG 87
Query: 191 CRYVHP---VDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDD 247
Y P + V + DY++ E GTG+VH AP G ED T+ YGLP+L VD+
Sbjct: 88 LPYTPPYPQALEKGYFV-VLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDE 146
Query: 248 EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEH 289
EGK E F GL + N A+++ L + L EE Y H
Sbjct: 147 EGKLLVEP--FKGLYFR-EANRAILRDLRGRGLLFKEESYLH 185
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 189 bits (480), Expect = 1e-50
Identities = 69/407 (16%), Positives = 129/407 (31%), Gaps = 95/407 (23%)
Query: 4 FKRYGVWADWNNPYLTLD--PEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEA 61
F R G DW+ + T P + F ++ +GYI +G V W P T L +
Sbjct: 137 FIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDH 196
Query: 62 ELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAK 121
+L E V Y + + L E + L T P TV + VN
Sbjct: 197 DLMEGED-VPILDYIIIKFE---------LRENGEVIYLPAATLRPETVYGVTNMWVNPN 246
Query: 122 LQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKK 181
Y +++ KD+++ +I+ + ++ + +
Sbjct: 247 ATYVKAKVRR--------------------KDKEETWIVSKEAAYKL--SFQDREIEVIE 284
Query: 182 TLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTS------- 234
G L +PV + ++ +++ ++ TG+V + P H D+V
Sbjct: 285 EFKGEKLIGKYVRNPVSGDEVIILP-AEFVDPDNATGVVMSVPAHAPFDHVALEDLKRET 343
Query: 235 ---LKYGLPI----------LSPVDDEGKFT-------------------EEA------- 255
KY + L ++ G F E+A
Sbjct: 344 EILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKA 403
Query: 256 ---------GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRAT 306
+ G V + A+ K + E+ + + K + I
Sbjct: 404 EYHKGIFKVPPYEGKPVQ-EVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIH 462
Query: 307 EQWFASV--EGFRQAAMDAIGQVKWVPPQEAPGYGA--DVLRLWVSS 349
+QWF +++ A A+ ++K +P + A D L +
Sbjct: 463 DQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACA 509
Score = 105 bits (263), Expect = 1e-23
Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 30/229 (13%)
Query: 329 WVPPQEA-PGYGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD 386
+ +A GADV+RL++ S ++ D KLR + +
Sbjct: 658 VLNFIDAIEENGADVVRLYIMSLAEHDSD-------FDWRRKEVGKLRKQIERFYELISQ 710
Query: 387 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 446
+ +L ID++ L +L +K + E ++ Q I+ DL +Y
Sbjct: 711 FAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDL-RWYLR 769
Query: 447 VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSA 506
+ R + + VL VR++AP PH+ E++W+ L
Sbjct: 770 RTEGR---------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGG--------- 811
Query: 507 AEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKL 555
FV +KWP E+W + I + ++ +++EVA+
Sbjct: 812 EGFVSLAKWPEPVEEWWNETIEAE--EEFIRSVMEDIKEIIEVAKIENA 858
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 167 bits (424), Expect = 1e-43
Identities = 69/407 (16%), Positives = 129/407 (31%), Gaps = 95/407 (23%)
Query: 4 FKRYGVWADWNNPYLTLD--PEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEA 61
F R G DW+ + T P + F ++ +GYI +G V W P T L +
Sbjct: 137 FIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDH 196
Query: 62 ELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAK 121
+L E V Y + + L E + L T P TV + VN
Sbjct: 197 DLMEGED-VPILDYIIIKFE---------LRENGEVIYLPAATLRPETVYGVTNMWVNPN 246
Query: 122 LQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKK 181
Y +++ KD+++ +I+ + ++ + +
Sbjct: 247 ATYVKAKVRR--------------------KDKEETWIVSKEAAYKL--SFQDREIEVIE 284
Query: 182 TLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTS------- 234
G L +PV + ++ +++ ++ TG+V + P H D+V
Sbjct: 285 EFKGEKLIGKYVRNPVSGDEVIILP-AEFVDPDNATGVVMSVPAHAPFDHVALEDLKRET 343
Query: 235 ---LKYGLPI----------LSPVDDEGKFT-------------------EEA------- 255
KY + L ++ G F E+A
Sbjct: 344 EILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKA 403
Query: 256 ---------GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRAT 306
+ G V + A+ K + E+ + + K + I
Sbjct: 404 EYHKGIFKVPPYEGKPV-QEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIH 462
Query: 307 EQWFASV--EGFRQAAMDAIGQVKWVPPQEAPGYGA--DVLRLWVSS 349
+QWF +++ A A+ ++K +P + A D L +
Sbjct: 463 DQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACA 509
Score = 85.0 bits (210), Expect = 3e-17
Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 19/169 (11%)
Query: 329 WVPPQEAPG-YGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD 386
+ +A GADV+RL++ S ++ D + + KLR + +
Sbjct: 658 VLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVG-------KLRKQIERFYELISQ 710
Query: 387 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 446
+ +L ID++ L +L +K + E ++ Q FY
Sbjct: 711 FAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWA----------FYSI 760
Query: 447 VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 495
+ R Y T + + VL VR++AP PH+ E++W+ L
Sbjct: 761 MNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 139 bits (352), Expect = 1e-37
Identities = 41/262 (15%), Positives = 84/262 (32%), Gaps = 37/262 (14%)
Query: 70 VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEI 129
+ Y + ++ P S L ++ L T P T+ V ++Y E
Sbjct: 2 MGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFET 61
Query: 130 QSLLEGDSAAPANKKSRPGNVLKDQKKVFII---VASDLVPTLEAKWGTKLVIKKTLAGS 186
+ +FI A ++ K + + K L G
Sbjct: 62 VN-----------------------GDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGE 98
Query: 187 DLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSL----KYGLPIL 242
++ P+ + + V+ I + GTG+V + P +D K L
Sbjct: 99 EILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAK 158
Query: 243 SPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTI 302
+ D+ E +++ G GN++ V DE ++ ++ K+
Sbjct: 159 YGIRDDMVLPFEP--VPVIEIPGFGNLSAVTICDE-----LKIQSQNDREKLAEAKEKIY 211
Query: 303 FRATEQWFASVEGFRQAAMDAI 324
+ + V+GF+ + +
Sbjct: 212 LKGFYEGIMLVDGFKGQKVQDV 233
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 128 bits (323), Expect = 4e-33
Identities = 36/266 (13%), Positives = 82/266 (30%), Gaps = 41/266 (15%)
Query: 23 EYEAAQIEV--FGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 80
EY ++E+ + + + + + + + ++ P + + A+F
Sbjct: 10 EYIGIKLELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSNPKNKAIFDQ 69
Query: 81 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAP 140
+ + + L T P T+ V +Y I
Sbjct: 70 LWENQVDNA-------KVYLLAATLRPETMVGQTNCWVLPTGRYGAYYI----------- 111
Query: 141 ANKKSRPGNVLKDQKKVFII---VASDLV--PTLEAKWGTKLVIKKTLAGSDLENCRYVH 195
++ +V I+ A ++ K +L ++GSDL
Sbjct: 112 ------------NKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVRA 159
Query: 196 PVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEA 255
P+ + V+ + I + GTG+V + P +DY + G
Sbjct: 160 PLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLM 219
Query: 256 GK----FSGLDVLGDGNVAVVKYLDE 277
+ +++ G ++ V+ +E
Sbjct: 220 LEPYSPLPIIEIPDIGTLSAVRLCEE 245
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 114 bits (287), Expect = 1e-28
Identities = 39/253 (15%), Positives = 68/253 (26%), Gaps = 80/253 (31%)
Query: 97 DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKK 156
+ L T P T+ V+ K+ Y V +
Sbjct: 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDA-----------------------GNGD 68
Query: 157 VFII---VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITT 213
FI ++ T+ G L R P + V+ + +
Sbjct: 69 YFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLA 128
Query: 214 ESGTGLVHTAPGHGQEDYVTSL-------KYGL--------PI-LSPVDDEGKFT----- 252
GTG+V P +D+VT+ YG+ + + + G
Sbjct: 129 TKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLV 188
Query: 253 --------------EEA----------------GKFSGLDVLGDGNVAVVKYLDEQ-MSL 281
A GK+ G V D V + L ++ ++
Sbjct: 189 NDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVE-DAKPKVKQDLIDEGLAF 247
Query: 282 IMEEP-YEHKYPY 293
+ EP EH + +
Sbjct: 248 VYNEPELEHHHHH 260
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 89.5 bits (223), Expect = 1e-18
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 6/144 (4%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 253
P+ P+ + + + GTG + P H DY ++GL +S ++ EG+
Sbjct: 244 RIPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEG 302
Query: 254 E--AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFA 311
E GLD + V+ E L+ EE Y R P + QW+
Sbjct: 303 ERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWL 361
Query: 312 SVEGFRQAAMDAI--GQVKWVPPQ 333
+ + + + G + +VP +
Sbjct: 362 RMRPLAEEVLKGLRRGDIAFVPER 385
Score = 71.8 bits (177), Expect = 4e-13
Identities = 51/295 (17%), Positives = 105/295 (35%), Gaps = 49/295 (16%)
Query: 338 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYR----KLRGTLRYLLGNLHDWRVGNS 392
YGAD LR + + G D+ + + L R KL R++L + G
Sbjct: 546 YGADALRFALIYLATGGQDIRLDLRWLEM----ARNFANKLYNAARFVLLSR----EGFQ 597
Query: 393 ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 452
D + D++ +L V+ I YE+ + + + + + ++Y + AK L
Sbjct: 598 AKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPAL 657
Query: 453 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 512
G + L L +++++ P++P L +++Q L E +
Sbjct: 658 KAGNAHT------LRTLEEVLAVLLKLLHPMMPFLTSELYQALT---------GKEELAL 702
Query: 513 SKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDAS 572
WP + E F + + T V + + + + E +VYL + A
Sbjct: 703 EAWPEPGGR---DEEAERAF-EALKQAVTAVRAL----KAEAGLPPAQEVRVYLEGETAP 754
Query: 573 LASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKV 627
+ + L+ +S+ ++LP P + + + +
Sbjct: 755 V-------------EENLEVFRFLSRADLLPERPAKALVKAMPRVTARMPLEGLL 796
Score = 63.0 bits (154), Expect = 2e-10
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 19/117 (16%)
Query: 5 KRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 64
KR G ADW+ T+D + A F + +G YR + V+W P T L++ E+E
Sbjct: 130 KRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE 189
Query: 65 YPE--GHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVN 119
G + Y G + + T P TV A+ A+AV+
Sbjct: 190 TEPTPGKLYTLRY--------EVEGGG---------FIEIATVRPETVFADQAIAVH 229
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 57.1 bits (139), Expect = 6e-10
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 192 RYVH--------PVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILS 243
RY H P+ P+ + + + GTG + P H DY ++GL +S
Sbjct: 43 RYRHLLGKRARIPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVS 101
Query: 244 PVDDEGKFTEE--AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY 287
++ EG+ E GLD + V+ E L+ EE Y
Sbjct: 102 VINLEGRMEGERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDY 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 8e-08
Identities = 62/377 (16%), Positives = 106/377 (28%), Gaps = 146/377 (38%)
Query: 408 QLENIVKNIRESYESYQFFKIF-----QIIQRFIIVDLSNFY------------------ 444
++++I+ + + + F +++Q+F+ L Y
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 445 --FDVAKDRLYTGGTT----SFTRRSCQTVLSAHLLSIVRVIAPILPH---------LAE 489
+ +DRLY + +R L LL + R +L +A
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVAL 168
Query: 490 DV---------------W----------------QNL-----PFAYTLEDGSAA------ 507
DV W Q L P + D S+
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 508 -------EFVFESKWP----VLD-----EKWRTFPVGEIYFWGKILELRT---EVNKVLE 548
+ + VL + W F + KIL L T +V L
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-----CKIL-LTTRFKQVTDFLS 282
Query: 549 VARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAK---HDADTLQRIFIISQVEVLPST 605
A T + SL+ T D + K L R EVL +
Sbjct: 283 AATTTHI---SLDHHSMTLTPDEVK-----SLL-LKYLDCRPQDLPR-------EVLTTN 326
Query: 606 PN--GLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEH--PTLCSR 661
P +I E + +G + K C +T + S + P +
Sbjct: 327 PRRLSII------AESIRDGLA-------TWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 662 CYEVLAVQP----IPSM 674
++ L+V P IP++
Sbjct: 374 MFDRLSVFPPSAHIPTI 390
Score = 54.5 bits (130), Expect = 1e-07
Identities = 54/459 (11%), Positives = 128/459 (27%), Gaps = 139/459 (30%)
Query: 143 KKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVI-------KKTLAGSDLENC---- 191
+ P VL+ +K+ + + + KL I ++ L ENC
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 192 ------RYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPV 245
+ + + C +++ TT + D++++ L
Sbjct: 251 LNVQNAKAWNAFNL-SCKILL-----TTRF-KQVT---------DFLSAATTTHISL--D 292
Query: 246 DDEGKFTEEAG-----KFSGLDVLG------DGN---VAVV---------------KYLD 276
T + K+ N ++++
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 277 EQMSLIMEEPYEHKYPYDWRT--KKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQE 334
++++ I+E P ++R + ++F A +P
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPP----------------SA-----HIPTI- 390
Query: 335 APGYGADVL-RLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSI 393
+L +W + DVM+ L + S + ++ + + + + +
Sbjct: 391 -------LLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQPKESTIS----IPSIYLELKV 437
Query: 394 SYDDLP-----MIDQYAL---FQLENIVKNIRESYESYQFF----KIFQIIQRFIIVDLS 441
++ ++D Y + F ++++ + Y Y K + +R +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTL--FR 494
Query: 442 NFYFDVA--KDRLYTGGTTSFTRRSCQTVLSAHLLSIVRV----IAPILPH---LAEDVW 492
+ D + ++ T S + L ++ I P L +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGS-----ILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 493 QNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIY 531
LP E + SK+ L I+
Sbjct: 550 DFLP--------KIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 47.5 bits (112), Expect = 2e-05
Identities = 44/300 (14%), Positives = 87/300 (29%), Gaps = 87/300 (29%)
Query: 392 SISYDDLPM-IDQYALFQLENIVKNIRES------YESYQFFKIFQIIQRFIIVDLSNFY 444
DLP + +L I ++IR+ ++ K+ II+ L+
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS----LNVLE 367
Query: 445 FDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDG 504
+ +++ LS+ A I L +W ++ +
Sbjct: 368 PAEYR-KMF------------------DRLSVFPPSAHIPTILLSLIWFDVIK-SDVMV- 406
Query: 505 SAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKV 564
+ S L EK I LEL+ ++ + R ++ K
Sbjct: 407 VVNKLHKYS----LVEKQPKESTISIP--SIYLELKVKLENEYALHR--SIVDHYNIPKT 458
Query: 565 Y------------------------------------LFTDDASLASRLREMCTAKHD-- 586
+ +F D L ++R TA +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 587 --ADTLQRI-----FIISQVEVLPSTPNGLIRNIPYSGEYLVEGK--DKVWIGVSRAEGS 637
+TLQ++ +I N ++ +P E L+ K D + I + + +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 51.0 bits (123), Expect = 2e-07
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVD-DEG 249
VHP+ + PV +++ E GTG V PGH Q DY + KYGL I + D E
Sbjct: 93 VHPLTGEEIPVWAA-NFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEP 151
Query: 250 KFTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 278
+++A G+F+GLD A+ L
Sbjct: 152 DLSQQALTEKGVLFNSGEFNGLDH-EAAFNAIADKLTAM 189
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 50.0 bits (120), Expect = 6e-07
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPV---DDEGK 250
+P + + PV +Y+ E GTG + P H Q D+ + KY LPI V +
Sbjct: 114 TNPANGEKIPVWSA-NYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIK-VVVKPEGAWD 171
Query: 251 FTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 278
F + A F GLD + ++L ++
Sbjct: 172 FEKGAYEGKGTLVNSDGFDGLDS-ETAKRKITEWLQDR 208
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 51.4 bits (124), Expect = 9e-07
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVD-DEG 249
VHP+ + PV +++ E GTG V PGH Q DY + KYGL I + D E
Sbjct: 330 VHPLTGEEIPVWAA-NFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEP 388
Query: 250 KFTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 278
+++A G+F+GLD A+ L
Sbjct: 389 DLSQQALTEKGVLFNSGEFNGLDH-EAAFNAIADKLTAM 426
Score = 44.9 bits (107), Expect = 1e-04
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 473 LLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 522
LL++VR++ P PH+ +WQ L + + WPV DEK
Sbjct: 774 LLAVVRMLNPFTPHICFTLWQEL---------KGEGDIDNAPWPVADEKA 814
Score = 30.2 bits (69), Expect = 2.6
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA 59
K G DW+ T PEY + + F ++ +G +Y+ V+W P+ +T LA
Sbjct: 132 LKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLA 187
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 49.5 bits (119), Expect = 3e-06
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 194 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI----LSPVDDEG 249
++P + P+ DY+ GTG + P H Q DY + K+GLPI P +
Sbjct: 312 LNPATGERIPIWTA-DYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLP 370
Query: 250 KFTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 278
+ E A G F G + +G V+ +L+E+
Sbjct: 371 EPLERAYEEPGIMVNSGPFDGTES-EEGKRKVIAWLEEK 408
Score = 43.3 bits (103), Expect = 2e-04
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 467 TVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 522
V + ++++ P PHLAE++W + +FE+ WP LDEK
Sbjct: 766 PVYRTAIRYYLQMLFPFAPHLAEELWHWFW----------PDSLFEAGWPELDEKA 811
Score = 32.9 bits (76), Expect = 0.38
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA 59
+ G+ DW+ T +PEY +F +M +G YR K V+W P +T LA
Sbjct: 112 LRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLA 167
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 42.4 bits (100), Expect = 5e-04
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 23/112 (20%)
Query: 394 SYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------V 447
+L +D+ AL ++E K + E +Y+F + + + N YFD
Sbjct: 421 ERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRV--MSLASFGNRYFDHKQPWKT 478
Query: 448 AKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNL 495
AK+ + T ++ L IV+ + P LP +E +W L
Sbjct: 479 AKE----------DKVRTGTTVN-ISLQIVKALGILLEPFLPDASEKIWHLL 519
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 6e-04
Identities = 71/492 (14%), Positives = 129/492 (26%), Gaps = 195/492 (39%)
Query: 306 TEQWF-ASV--EGFRQAAMDAIGQVKWVPPQEAPGYGAD-----VLRLWVSSVDYTGDVM 357
T +F AS E F + P+ G+ AD L + Y +
Sbjct: 24 TASFFIASQLQEQFNKIL-----------PEPTEGFAADDEPTTPAELVGKFLGYVSSL- 71
Query: 358 IGPQVLRQMSDIYRKLRGTLR-----YLLGN-LHDWRVGNSISYDDLPMIDQ-------- 403
+ P + Q + L L YL GN +H + +D ++
Sbjct: 72 VEPSKVGQFDQV---LNLCLTEFENCYLEGNDIHA-LAAKLLQENDTTLVKTKELIKNYI 127
Query: 404 -----------------------------YALF--Q--LENIVKNIRESYESYQ------ 424
A+F Q ++ + +R+ Y++Y
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 425 FFKIFQIIQRFI--IVDLSNFY---FDVAK---------DRLYTG---------GTTSFT 461
+ + I +D + ++ + D+ Y G
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 462 R--RSCQTV-------------LSAHLLSIV--RVIAPILPHLAEDVWQNLPFAYTLEDG 504
+ + + + H +V IA D W++ +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA------ETDSWESF---FVSVR- 297
Query: 505 SAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVN---------------KVLE- 548
A +F + + + +P ILE E N + ++
Sbjct: 298 KAITVLF---FIGV-RCYEAYPN--TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 549 -VARTGKLIGSSLEAKVYLF-TDDA-----------SLASRLREMCTAKHDADTLQ-RI- 593
V +T + + + ++ L L LR+ A D Q RI
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK-APSGLD--QSRIP 408
Query: 594 FIISQ------VEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWN--- 644
F S+ LP P+ LV D + + +N
Sbjct: 409 F--SERKLKFSNRFLPVA-------SPFHSHLLVPASDLI---NKDLVKNNVS--FNAKD 454
Query: 645 -----YSTQVGS 651
Y T GS
Sbjct: 455 IQIPVYDTFDGS 466
Score = 42.0 bits (98), Expect = 7e-04
Identities = 48/278 (17%), Positives = 80/278 (28%), Gaps = 109/278 (39%)
Query: 397 DLPMIDQYALFQLENIVKN----------------IRESYESYQF----------FKIFQ 430
D D Y F + +IV N IRE+Y + F KIF+
Sbjct: 1650 DNHFKDTYG-FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 431 IIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAED 490
I +++ F K L T FT Q L+ + L
Sbjct: 1709 EINE----HSTSYTFRSEKGLLS---ATQFT----QPALTLMEKAAFED-------LKS- 1749
Query: 491 VWQNLP----FA------YT-LEDGSAAE-FVFESKWPVLDEKWRTFPVGEIYFWGKILE 538
+P FA Y L S A+ ES ++ +++
Sbjct: 1750 -KGLIPADATFAGHSLGEYAAL--ASLADVMSIES---LV----------------EVVF 1787
Query: 539 LRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQ 598
R G + ++ ++ +A + A + LQ +
Sbjct: 1788 YR------------GMTMQVAVPRDELGRSNYGMIAINPGRVA-ASFSQEALQYV----- 1829
Query: 599 VEVLPSTPNGLIR----NIP---Y--SGEYLVEGKDKV 627
VE + L+ N+ Y +G+ + D V
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAAGD--LRALDTV 1865
Score = 42.0 bits (98), Expect = 8e-04
Identities = 80/487 (16%), Positives = 141/487 (28%), Gaps = 186/487 (38%)
Query: 19 TLDPEYEAAQIEVFGQMSLQGYIYR----GKKPVHWSPSSRTALAEAELEYPEGHVSRSI 74
L E + ++ + ++ Y K+P +S AL A EG+ +
Sbjct: 107 KLLQENDTTLVKT--KELIKNY-ITARIMAKRPFDKKSNS--ALFRAV---GEGNAQ--L 156
Query: 75 YAVF-------------RMVSA--PP-------STSGLLNEFLPD---------LGLAV- 102
A+F R + ++ L+E + GL +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 103 -WTTTPWTVPAN---AAVAVNAKL-------QYAVV---------EIQSLLEGDS----- 137
W P P ++ ++ L Y V E++S L+G +
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 138 ----AAPANKKSRP---GNVLKDQKKVFIIVA--------SDLVPT-----LEAKWGTK- 176
A A S +V K +F I + L P+ LE G
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 177 --LVIKKTLAGSDLENCRYVHPVDNRQCP---------------VVIGGDYITTESGTGL 219
L I L ++ YV+ N P +V+ G +S GL
Sbjct: 337 PMLSISN-LTQEQVQ--DYVNKT-NSHLPAGKQVEISLVNGAKNLVVSG---PPQSLYGL 389
Query: 220 VHT-----APG--------HGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGD 266
T AP + S ++ LP+ SP F S
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LPVASP------F------HS------- 429
Query: 267 GNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAA------ 320
L LI ++ ++ ++ + + ++ T R +
Sbjct: 430 ------HLLVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDG----SDLRVLSGSISER 478
Query: 321 -MDAI--GQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSD-IYRKLRGT 376
+D I VKW + + A + +D+ GP + +R GT
Sbjct: 479 IVDCIIRLPVKW---ETTTQFKA----THI--LDF------GPGGASGLGVLTHRNKDGT 523
Query: 377 -LRYLLG 382
+R ++
Sbjct: 524 GVRVIVA 530
Score = 35.0 bits (80), Expect = 0.089
Identities = 51/332 (15%), Positives = 99/332 (29%), Gaps = 129/332 (38%)
Query: 9 VW--ADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRG---KKPVHWSPSSRTALAE--A 61
VW AD + + +G S+ I +H+ + E +
Sbjct: 1645 VWNRADN---HFK----------DTYG-FSILD-IVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 62 ELEY---PEGHVSRSIYAVFRMVSAPPST------SGLLNEFLPDLGLAVWTTTPWTVPA 112
+ + +G + +F+ ++ ++ GLL+ T +T PA
Sbjct: 1690 AMIFETIVDGKLKTE--KIFKEINEHSTSYTFRSEKGLLSA------------TQFTQPA 1735
Query: 113 NAAVAVNAKLQYAVVEIQSLLEGDS-------------AAPANKKSRPGNVL--KDQKK- 156
+ A + ++ + L+ D+ A+ A+ V+ + +
Sbjct: 1736 LTLMEK-A--AFEDLKSKGLIPADATFAGHSLGEYAALASLAD-------VMSIESLVEV 1785
Query: 157 VFI--IVASDLVPTLEAKWGTKLVI----KKTLAGSDLENCRYVHPVDNRQCPVVIGGDY 210
VF + VP E +I + A E +YV V+
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV--VER----------- 1832
Query: 211 ITTESGTGLVHTA----PGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGD 266
+ +G LV Q YV AG LD + +
Sbjct: 1833 VGKRTG-WLVEIVNYNVEN-QQ--YVA---------------------AGDLRALDTVTN 1867
Query: 267 -------GNVAVVKYLDEQMSLIMEEPYEHKY 291
+ +++ L + +SL EE H +
Sbjct: 1868 VLNFIKLQKIDIIE-LQKSLSL--EEVEGHLF 1896
Score = 33.1 bits (75), Expect = 0.42
Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 56/203 (27%)
Query: 15 NPYLTLDPEYEAAQIEVF---------G-QMSLQGYI--YRGKKPVHWSPSSRTALAEAE 62
N +L P + +I + G SL G R K SR +E +
Sbjct: 357 NSHL---PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 63 LEYPEGHVSRSIYAVFRMVSAP-------PSTSGLLNEFL--------PDLGLAVWTTTP 107
L+ F V++P P++ + + + D+ + V+ T
Sbjct: 414 LK---------FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 108 WTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSR-----PGNV---------LKD 153
+ + +++ ++ ++ + E K + PG KD
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWE---TTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 154 QKKVFIIVASDLVPTLEAKWGTK 176
V +IVA L + +G K
Sbjct: 522 GTGVRVIVAGTLDINPDDDYGFK 544
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 41.4 bits (98), Expect = 9e-04
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 401 IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD-RLYTGGTTS 459
D + + I E++ES +F K + I + DL+N Y D +
Sbjct: 426 ADPQLYKTFTDAAEVIGEAWESREFGKAVREI--MALADLANRYVDEQAPWVVAK---QE 480
Query: 460 FTRRSCQTVLS-----AHLLSIVRVIAPILPHLAEDVWQNL 495
Q + S +L + P+LP L E L
Sbjct: 481 GRDADLQAICSMGINLFRVLMTY--LKPVLPKLTERAEAFL 519
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 38.1 bits (88), Expect = 0.011
Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 41/185 (22%)
Query: 331 PPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNL------ 384
P ++A +G D L+ ++ + ++ +L G L LGNL
Sbjct: 334 PVEKAEEFGYDALKYFLLR-----ESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTS 388
Query: 385 -HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNF 443
G S D+ + ++++ Y K + F ++ N
Sbjct: 389 AKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAV--FDVLRAINA 446
Query: 444 YFD------VAKD---RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAED 490
Y + K RL +TVL L VRV PILP +
Sbjct: 447 YVTDMAPWKLVKTDPERL-------------RTVL-YITLEGVRVTTLLLSPILPRKSVV 492
Query: 491 VWQNL 495
++ L
Sbjct: 493 IFDML 497
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 36.9 bits (86), Expect = 0.022
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 27/155 (17%)
Query: 381 LGNL--------HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII 432
LGNL + D L + +++ +RE ++ + I
Sbjct: 366 LGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAI 425
Query: 433 QRFIIVDLSNFYFD------VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----P 482
+ +N YF + K + ++ +TVL L +VR+ + P
Sbjct: 426 WSVL--GAANRYFSAQEPWVLRKS------DAAEDQQRFRTVL-YTTLEVVRIASLLLQP 476
Query: 483 ILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPV 517
++P + L D SA + +
Sbjct: 477 VMPESTAKLLDLLGQPTDERDFSAIANRIKPGTSL 511
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 36.4 bits (85), Expect = 0.026
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 29/121 (23%)
Query: 402 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKD---RL 452
L + + +R +F + V N Y + + K
Sbjct: 377 AGEELAEGTGLAGRLRPLVRELKFHVALEEA--MAYVKALNRYINEKKPWELFKKEPEEA 434
Query: 453 YTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLPFAYTLEDGSAAE 508
+ VL ++ +R+ + P +P ++ + L + A
Sbjct: 435 -------------RAVL-YRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 480
Query: 509 F 509
+
Sbjct: 481 W 481
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 35.7 bits (83), Expect = 0.052
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 402 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKDRLYTG 455
D+ + +KN E F+K + I +F N Y D + K+R
Sbjct: 375 DEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKER---- 428
Query: 456 GTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLPFAYTLED 503
+ Q VL L+ + V+ PI P+ ++ Q L L++
Sbjct: 429 -----KKEELQKVL-YALVDGLFVLTHLLYPITPNKMKEALQMLGEKEFLKE 474
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 35.7 bits (83), Expect = 0.052
Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 37/136 (27%)
Query: 381 LGNL--------HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII 432
LGNL G D+ L Q + ++ R++ + I
Sbjct: 377 LGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAI 436
Query: 433 QRFIIVDLSNFYFD------VAKD---RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA-- 481
+ +N YF + K R+ TVL ++R +
Sbjct: 437 FAVV--AEANRYFAGQEPWALRKTDPARM-------------GTVL-YVTAEVLRRVGIM 480
Query: 482 --PILPHLAEDVWQNL 495
P +P AE + L
Sbjct: 481 VQPFIPQSAEKLLDIL 496
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 35.7 bits (83), Expect = 0.053
Identities = 24/135 (17%), Positives = 40/135 (29%), Gaps = 36/135 (26%)
Query: 381 LGNL-------HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQ 433
LGNL G + D+ + L N+ + Y I
Sbjct: 395 LGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAI- 453
Query: 434 RFIIVDLSNFYFD------VAKD---RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA--- 481
F ++ N Y + K RL TVL + +R+
Sbjct: 454 -FDVLRSLNAYVTENAPWKLVKMDTARL-------------GTVL-YVTMEGLRICTMFL 498
Query: 482 -PILPHLAEDVWQNL 495
P++P A+++ L
Sbjct: 499 QPVMPQKAKEIMDAL 513
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.15
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 12/41 (29%)
Query: 25 EAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA-EAELE 64
E ++ Q SL+ Y + S ALA +A +E
Sbjct: 18 EKQALKKL-QASLKLY----------ADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 1.2
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 14/33 (42%)
Query: 91 LNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ 123
L + D + P A+A+ A ++
Sbjct: 29 LKLYADD-------SAP-------ALAIKATME 47
Score = 28.0 bits (61), Expect = 7.2
Identities = 7/17 (41%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 560 LEAKVYLFTDDA--SLA 574
L+A + L+ DD+ +LA
Sbjct: 25 LQASLKLYADDSAPALA 41
Score = 27.6 bits (60), Expect = 8.1
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 8/22 (36%)
Query: 128 EIQSL--LEG------DSAAPA 141
E Q+L L+ D +APA
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.3 bits (73), Expect = 0.34
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 7/31 (22%)
Query: 502 EDGSAAEFVFESKWPVLDEK-------WRTF 525
E S + V VL +K WRTF
Sbjct: 36 ERFSEGDVVCALCGLVLSDKLVDTRSEWRTF 66
Score = 29.6 bits (66), Expect = 2.6
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 638 KCERCWNYSTQVGSFVEHP----TLCSRCYEVLAVQPI 671
C C Y ++ VE +C+ C VL+ + +
Sbjct: 23 TCPECKVYPPKI---VERFSEGDVVCALCGLVLSDKLV 57
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 28.3 bits (63), Expect = 5.1
Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 277 EQMSLIMEEPYEHKYPY-DWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEA 335
+ ++H Y T T + F E + +W+
Sbjct: 76 PITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDAL 135
Query: 336 PGY 338
Sbjct: 136 LAS 138
>2ftr_A BH0200; structural genomics, joint center for structural genomics,
J protein structure initiative, PSI-2, unknown function;
HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15
Length = 108
Score = 27.4 bits (61), Expect = 5.7
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 274 YLDEQMSLIMEEP----YEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 326
Y + L + P + + + E ++ E +QA G+
Sbjct: 28 YFNTHAPLTRKIPGLRDMKVTRIVGSPMGESKFYLMCEMYYDDHESLQQAMRTDEGK 84
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein
structure initi midwest center for structural genomics,
PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP:
d.159.1.8
Length = 195
Score = 28.1 bits (62), Expect = 6.7
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 350 VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISY 395
+ + GD + I++ L G ++GN HD + Y
Sbjct: 47 LYHLGDFTWHFNDKNEYLRIWKALPGRKILVMGN-HDKDKESLKEY 91
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 28.3 bits (62), Expect = 9.7
Identities = 8/58 (13%), Positives = 13/58 (22%), Gaps = 4/58 (6%)
Query: 615 YSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIP 672
S + D W V +F+ + E L +P
Sbjct: 283 CSVNINIGPGDCEWFVVPEGYWGVLNDFC--EKNNLNFLMGSWWPN--LEDLYEANVP 336
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.415
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,820,323
Number of extensions: 674541
Number of successful extensions: 1450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1397
Number of HSP's successfully gapped: 57
Length of query: 678
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 578
Effective length of database: 3,909,693
Effective search space: 2259802554
Effective search space used: 2259802554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)