RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 005766
(678 letters)
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 273
Score = 186 bits (472), Expect = 1e-54
Identities = 101/299 (33%), Positives = 151/299 (50%), Gaps = 30/299 (10%)
Query: 370 YRKLRGTLRYLLGNLHDWRVG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKI 428
YRK+R TLR++LGN++D+ +SI +L +D+Y L +L + +YE++ + I
Sbjct: 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNI 60
Query: 429 FQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLA 488
+Q +Q FI V+LSNFY D KD LY S RRS QTVL L+ + +++APIL H A
Sbjct: 61 YQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTA 120
Query: 489 EDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLE 548
E+VW + P A L +KWR + LR +VN+ LE
Sbjct: 121 EEVWSHTPHVKEESVHLADMPKVVEVDQALLDKWR-----------TFMNLRDDVNRALE 169
Query: 549 VARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNG 608
AR K+IG SLEAKV + ++D AS A H + ++ ++ +++ +
Sbjct: 170 TARNEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQAT---- 225
Query: 609 LIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 667
+ I + A+G KCERCWNYS +G+ E LC RC +V+
Sbjct: 226 --------------AYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVK 270
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 111 bits (278), Expect = 8e-29
Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 31/223 (13%)
Query: 69 HVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVE 128
S SIY F + D +WTTTPWT+P+N A+ V+ +L+Y
Sbjct: 3 KRSASIYVAFNVKDDK-------GVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYN 55
Query: 129 IQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDL 188
+ +K + SD V + ++K G +L
Sbjct: 56 VN----------------------GEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKEL 93
Query: 189 ENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDE 248
E HP +R+ V+ G D++TT++GTG VHTAPGHG++DY+ +Y LP++SP+DD+
Sbjct: 94 EWVVAQHPFLDRESLVING-DHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDK 152
Query: 249 GKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKY 291
G FTEE G+F G+ N AV L E+ +L+ + H Y
Sbjct: 153 GVFTEEGGQFEGMFY-DKANKAVTDLLTEKGALLKLDFITHSY 194
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 85.8 bits (211), Expect = 5e-20
Identities = 62/215 (28%), Positives = 83/215 (38%), Gaps = 40/215 (18%)
Query: 73 SIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSL 132
S+Y F + L L +WTTTPWT+P N A AV+ + YA ++
Sbjct: 2 SVYVRFPLKEPK-------KLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV--- 51
Query: 133 LEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCR 192
G + KT G LE
Sbjct: 52 -------------------------GDEALILEEGLGRKLLGEGTPVLKTFPGKALEGLP 86
Query: 193 YVHPVDNRQCP--VVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGK 250
Y P V+ DY++ E GTG+VH AP G ED T+ YGLP+L VD+EGK
Sbjct: 87 YTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGK 146
Query: 251 FTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEE 285
E F GL + N A+++ L + L EE
Sbjct: 147 LLVE--PFKGLYFR-EANRAILRDLRGRGFLFKEE 178
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 63.4 bits (153), Expect = 4e-12
Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 41/196 (20%)
Query: 97 DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKK 156
++ + V+TT P T+ + + + + +K+
Sbjct: 15 EVRIPVFTTRPDTLFGATFLVLAPEHPLTLELA----------------------APEKR 52
Query: 157 VFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESG 216
++ + +K ++P + P+ DY+ G
Sbjct: 53 EEVLAYVEAAKRKTEIERQAEGREK---TGVFLGAYALNPATGERIPIWT-ADYVLFGYG 108
Query: 217 TGLVHTAPGHGQEDYVTSLKYGLPILSPVD--------------DEGKFTEEAGKFSGLD 262
TG + P H Q DY + K+GLPI ++ +E +G F G +
Sbjct: 109 TGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTE 168
Query: 263 VLGDGNVAVVKYLDEQ 278
+G V+ +L+E+
Sbjct: 169 SE-EGKRKVIAWLEEK 183
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 62.7 bits (151), Expect = 6e-11
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
+ G+ DW+ T +PEY +F +M +G YR K V+W P +T LA ++
Sbjct: 112 LRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Query: 64 EYPEGH 69
Sbjct: 172 VEGRCW 177
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 218
Score = 49.3 bits (116), Expect = 3e-07
Identities = 35/239 (14%), Positives = 81/239 (33%), Gaps = 40/239 (16%)
Query: 372 KLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQI 431
KL R++L + + D + D++ +L V+ I YE+ + +
Sbjct: 3 KLYNAARFVLLSREGF----QAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAARE 58
Query: 432 IQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDV 491
+ + + ++Y + AK L G + +++++ P++P L ++
Sbjct: 59 VYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLA------VLLKLLHPMMPFLTSEL 112
Query: 492 WQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVAR 551
+Q L L + P G + E + + +
Sbjct: 113 YQALTG-----------------KEELALEAWPEPGGRDEEAERAFEALKQAVTAVRALK 155
Query: 552 TGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLI 610
+ + E +VYL + A + + L+ +S+ ++LP P +
Sbjct: 156 AEAGLPPAQEVRVYLEGETAPV-------------EENLEVFRFLSRADLLPERPAKAL 201
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 47.9 bits (113), Expect = 3e-07
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 7/133 (5%)
Query: 158 FIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIG-GDYITTESG 216
FI +A+ T+ + + + + + + I + + G
Sbjct: 15 FIEIATVRPETV---FADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFG 71
Query: 217 TGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEA--GKFSGLDVLGDGNVAVVKY 274
TG + P H DY ++GL +S ++ EG+ E GLD + V+
Sbjct: 72 TGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRF-EARRKAVEL 130
Query: 275 LDEQMSLIMEEPY 287
E L+ EE Y
Sbjct: 131 FREAGHLVKEEDY 143
Score = 31.0 bits (69), Expect = 0.21
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 100 LAVWTTTPWTVPANAAVAVNAKLQY 124
+ + T P TV A+ A+AV+ + +
Sbjct: 16 IEIATVRPETVFADQAIAVHPEDER 40
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 46.1 bits (108), Expect = 9e-06
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
KR G ADW+ T+D + A F + +G YR + V+W P T L++ E+
Sbjct: 129 LKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEV 188
Query: 64 EYPEGH 69
E
Sbjct: 189 ETCSRC 194
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 128
Score = 42.6 bits (99), Expect = 2e-05
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 27/131 (20%)
Query: 391 NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 450
+ L D+ +L +K + E E+ +F + F+
Sbjct: 21 GVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTP 80
Query: 451 RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFV 510
V + ++++ P PHLAE++W + +
Sbjct: 81 -----------------VYRTAIRYYLQMLFPFAPHLAEELWHWF----------WPDSL 113
Query: 511 FESKWPVLDEK 521
FE+ WP LDEK
Sbjct: 114 FEAGWPELDEK 124
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 42.6 bits (99), Expect = 1e-04
Identities = 42/66 (63%), Positives = 55/66 (83%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
F+R GV D+N+PY+TL PEYEAAQI +FG+M+ +G IY+GKKPV+WSPSS ++LAEAE+
Sbjct: 139 FRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEI 198
Query: 64 EYPEGH 69
EYP
Sbjct: 199 EYPHDW 204
Score = 41.1 bits (95), Expect = 3e-04
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 338 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSD 368
GAD+ RLWVSS DY DV I ++L+Q SD
Sbjct: 419 KGADIARLWVSSTDYLADVRISDEILKQTSD 449
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 41.5 bits (96), Expect = 3e-04
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 4 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 63
+R W D + Y TL+P Y + + +G +YR K V + P T L+ E+
Sbjct: 134 TERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193
Query: 64 EYPEGHVSRSIYAVFRMVS 82
H R + +
Sbjct: 194 ALGYPHCWRCSTPLMYYAT 212
Score = 40.3 bits (93), Expect = 6e-04
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 274 YLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPP 332
Y + + YP+ WR P ++ ATE WF F+ + ++ WVPP
Sbjct: 180 YCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPP 238
Score = 33.8 bits (76), Expect = 0.077
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 338 YGADVLRLWV-SSVDYTGDVMIGPQVLRQM 366
+GAD LR ++ S D GP ++R+
Sbjct: 420 FGADALRWYIYVSAPPEADRRFGPNLVRET 449
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 39.9 bits (92), Expect = 7e-04
Identities = 11/76 (14%), Positives = 24/76 (31%)
Query: 8 GVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPE 67
G ++N + T E ++ ++ G+I + P L + +
Sbjct: 83 GFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGA 142
Query: 68 GHVSRSIYAVFRMVSA 83
V R F + +
Sbjct: 143 TPVMRDSEHFFFDLPS 158
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 33.3 bits (75), Expect = 0.037
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 3/95 (3%)
Query: 401 IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSF 460
+ L + + +R +F + ++ N Y + K
Sbjct: 28 VAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKA--LNRYINEKKPWELFKKEPEE 85
Query: 461 TRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 495
R V+ L ++ P +P ++ + L
Sbjct: 86 ARAVLYRVVEG-LRIASILLTPAMPDKMAELRRAL 119
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 30.6 bits (68), Expect = 0.47
Identities = 13/116 (11%), Positives = 39/116 (33%), Gaps = 6/116 (5%)
Query: 270 AVVKYLDEQMSLIMEEPY-EHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVK 328
+V++ E+ +++ + E + + + P + T + A + A D +V
Sbjct: 86 SVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVH 145
Query: 329 WVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVL-----RQMSDIYRKLRGTLRY 379
W + + ++D +G L + + ++ + +
Sbjct: 146 WFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIKAFNRVVDKMEH 201
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 322
Score = 29.8 bits (67), Expect = 1.0
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 377 LRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE----SYQFFKIFQII 432
Y + L VG I ++L + L + S+ YQ + +++
Sbjct: 36 EGYSIYRLAYENVGIVIDPENLIIATTKELEYEGEFIPEGEISFSELRNDYQSKLVLRLL 95
Query: 433 QR--FIIVDLS----NFYFDVAKDRL 452
+ +LS F
Sbjct: 96 KENGIGEYELSKLLRKFRKPKTFGDY 121
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis
[TaxId: 476]}
Length = 256
Score = 27.7 bits (60), Expect = 4.8
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 434 RFIIVDLSNFYFDVAKDRL 452
FI D++ Y + A L
Sbjct: 236 NFIGCDMNAEYVNQANFVL 254
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 194
Score = 26.4 bits (58), Expect = 8.1
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 506 AAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEV 549
E V S PV+D Y +LE +V+E
Sbjct: 24 TVEEVLSSLGPVVDAH-------PEYEEVALLERMVIPERVIEF 60
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 25.5 bits (56), Expect = 8.2
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 510 VFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLE 561
V + K D K R G + + G+I L+ + V EV G G +++
Sbjct: 28 VTDGKI-TRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREV-AQGYECGLTIK 77
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Length = 137
Score = 26.0 bits (56), Expect = 8.4
Identities = 6/64 (9%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 275 LDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFA--SVEGFRQAAMDAIGQVKWVPP 332
E+ ++ E+ H+ ++ + + +++ KW
Sbjct: 52 TKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCEL 111
Query: 333 QEAP 336
++A
Sbjct: 112 EDAI 115
>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA
methyltransferase {Proteus vulgaris [TaxId: 585]}
Length = 320
Score = 27.0 bits (58), Expect = 8.7
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 434 RFIIVDLSNFYFDVAKDRL 452
++I ++ Y + R
Sbjct: 274 KWISFEMKPEYVAASAFRF 292
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.415
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,641,701
Number of extensions: 128971
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 32
Length of query: 678
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 587
Effective length of database: 1,158,166
Effective search space: 679843442
Effective search space used: 679843442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)