BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005767
(678 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With
2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9-
Isopropylpurine (Casp Target)
Length = 310
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 349 MESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPS 408
M +I L+R+ +++L+ R+VK N +G+ +KEH++ ++ L+K +DP
Sbjct: 101 MIAIQLLSRMEYVHSKNLIY---RDVKPENFLIGRQGNKKEHVIHIIDFGLAKEY-IDPE 156
Query: 409 SKTN 412
+K +
Sbjct: 157 TKKH 160
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 30 ERFREVLAELNRERQAREAAENSATELSEKF-------NRLKALAHESIKRRDESTRQ-- 80
E+F+ L + ++ERQA N +++ + + N + + I + E RQ
Sbjct: 528 EQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLV 587
Query: 81 --RDEALREKEEILRSNDKLSTEI-AEVNIAKDEVVKQLDEVTK 121
RD+AL E+ + N++L + A+ N+ + +++E+ +
Sbjct: 588 PRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGR 631
>pdb|2QPX|A Chain A, Crystal Structure Of Putative Metal-Dependent Hydrolase
(Yp_805737.1) From Lactobacillus Casei Atcc 334 At 1.40
A Resolution
Length = 376
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 432 SKLLSDGKVPVSDDKANAMETEEDEIYNLA 461
L DGKVP DD+ + TE D+ Y LA
Sbjct: 19 CHFLIDGKVPNRDDRLAQVSTEADKDYPLA 48
>pdb|1S1I|J Chain J, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 173
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 190 IKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVS 230
+ R ++++E+L GQ +K+R VR +RN +IA+ V+
Sbjct: 29 LTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVT 69
>pdb|3IZS|E Chain E, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|K Chain K, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|K Chain K, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|J Chain J, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|J Chain J, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|J Chain J, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 174
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 190 IKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVS 230
+ R ++++E+L GQ +K+R VR +RN +IA+ V+
Sbjct: 30 LTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVT 70
>pdb|3JYW|J Chain J, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 151
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 190 IKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVS 230
+ R ++++E+L GQ +K+R VR +RN +IA+ V+
Sbjct: 29 LTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVT 69
>pdb|2NOQ|H Chain H, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires
Rna
pdb|3J0Q|KK Chain k, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas
Fitted To A 10.6a Cryo-Em Map: Rotated Pre State 2
Length = 165
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 190 IKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVS 230
+ R ++++E+L GQ +K+R VR +RN +IA+ V+
Sbjct: 24 LTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVT 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.126 0.324
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,281,012
Number of Sequences: 62578
Number of extensions: 551598
Number of successful extensions: 2126
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1989
Number of HSP's gapped (non-prelim): 164
length of query: 678
length of database: 14,973,337
effective HSP length: 105
effective length of query: 573
effective length of database: 8,402,647
effective search space: 4814716731
effective search space used: 4814716731
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)