BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005767
         (678 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5XVA8|Y3905_ARATH Uncharacterized protein At3g49055 OS=Arabidopsis thaliana
           GN=At3g49055 PE=2 SV=1
          Length = 480

 Score =  115 bits (287), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 194/366 (53%), Gaps = 31/366 (8%)

Query: 294 LLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIY 353
           LL D  +YV  + D++  +I+ +++ N+           P+E +    +       +SI 
Sbjct: 110 LLSDIADYVRSMEDRLSKLIRCLNEENV-----------PEE-ERGRKLETKEYNSKSIL 157

Query: 354 QLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSK-TN 412
           +L + VV K     +   ++   L+ +V  L +E   I  LLR+AL ++ + +   K  N
Sbjct: 158 ELVKEVVTKLETFQESTKKKKMELSRSVEFLEEENRDINVLLRAALFEKQTAEKQLKEMN 217

Query: 413 E-----LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI 467
           +     L ++A  GL+  G  F   +      V  S +  N    EE+    +  A+E  
Sbjct: 218 DQKGLALLQIAGRGLQRIGFGFGLGE-----SVEESSETGNIANEEEEN--GVVIAIEKT 270

Query: 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGL 527
           +K  + E+ +L+ S+EE R E   L++  E QA++L+     I +L+ +E+   ++VE L
Sbjct: 271 MKKLRQEVSQLKISLEESRLEEVGLRKVTEEQAQKLAENTVYINKLQNQEKFLAQNVEEL 330

Query: 528 MLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQL-SSLKQELEEAKQALSESEKKLGF 586
           +  I  AE E+SRW+ A E E  AG+  E E   QL + LK E+E+ + AL+ SE KL  
Sbjct: 331 VKAIREAESEVSRWREACELEVEAGQR-EVEVRDQLIAVLKSEVEKLRSALARSEGKLKL 389

Query: 587 KEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEFESREDSRGRNRPRYV-C 645
           KEE A AAM A +AAEKSLRLA+ R ++L  R+E L  QLEE ES E  RG  + RYV C
Sbjct: 390 KEELAKAAMVAEEAAEKSLRLAERRIAQLLSRIEHLYRQLEEAESTERRRG--KFRYVWC 447

Query: 646 WP-WQW 650
           WP W++
Sbjct: 448 WPMWRF 453


>sp|Q8S2T0|GRIP_ARATH Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 SV=2
          Length = 788

 Score = 42.4 bits (98), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 43/267 (16%)

Query: 16  EIDV--QTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKR 73
           EIDV  QT    + ++E  RE  +E          A+  + E S KF++++    + IK 
Sbjct: 97  EIDVEKQTRVAAEQALEHLREAYSE----------ADAKSQEYSSKFSQVEQKLDQEIKE 146

Query: 74  RDES--------TRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDG 125
           RDE         TR    A +  +EI +  D L     EVN   +    Q   + +  + 
Sbjct: 147 RDEKYADLDAKFTRLHKRAKQRIQEIQKEKDDLDARFREVNETAERASSQHSSMQQELER 206

Query: 126 SRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAV 185
           +R Q +E  KA D  R ++ ++ + L   IE++ G +           P+  K   L   
Sbjct: 207 TRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQ----------PKENKIETLQQS 256

Query: 186 VYGVIKRTNEIVEELVGQIDATAKSRNDVREQM---EQRNFEIAIEVSELEATISGLREE 242
           +       ++I+E+L  Q+ A  + +     ++    Q+N E       LEA +     E
Sbjct: 257 LLD----KDQILEDLKKQLQAVEERKQIAVTELSAKHQKNLE------GLEAQVVDALSE 306

Query: 243 VAKKSSFIENLEKSLIEKDEKVAEIES 269
             K +  I +L+  L EK+ K+AE+E+
Sbjct: 307 RDKAAETISSLQVLLAEKESKIAEMEA 333


>sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CENPF PE=1 SV=2
          Length = 3210

 Score = 37.4 bits (85), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH 505
           E   +ASQ++  ELR S+EE++ E++LLK H E +A+E+ H
Sbjct: 464 EQAFQASQIKENELRRSMEEMKKENNLLKSHSEQKAREVCH 504


>sp|P55937|GOGA3_MOUSE Golgin subfamily A member 3 OS=Mus musculus GN=Golga3 PE=1 SV=3
          Length = 1487

 Score = 36.6 bits (83), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 492 LKEHLEAQAKELSHRMKRIEE--LEEKERIANE--SVEGLMLDIAAAEEEISRWKAAAEQ 547
           L EHL+ +   LSH++   +   ++EKERIA +  S+E  MLD  AA  +I   K   E+
Sbjct: 605 LLEHLKLENVSLSHQLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEE 664

Query: 548 -------EAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDA 600
                  E    R   Q+     +SL+Q+LE+ K  L + +++L   ++     +    +
Sbjct: 665 DLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTS 724

Query: 601 AEKSLRLADTRASRLRDRVEELSHQLEEFESREDSR 636
            +++L+        L  R +EL  +LEE +   DSR
Sbjct: 725 TQEALQAKGQSLDDLHTRYDELQARLEELQREADSR 760


>sp|A7THU9|SP110_VANPO Spindle pole body component 110 OS=Vanderwaltozyma polyspora
           (strain ATCC 22028 / DSM 70294) GN=SPC110 PE=3 SV=1
          Length = 929

 Score = 34.3 bits (77), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 180/408 (44%), Gaps = 52/408 (12%)

Query: 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLK 286
           IE   L+  I  L EE+   +  ++ + K LI KDE +A  E    +++QL N + D LK
Sbjct: 214 IERDNLQNKIDKLSEELGTLNDKLDTITKELIAKDELIASNEE---DIKQL-NSHIDTLK 269

Query: 287 N-LESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRAS 345
           N +      ++++ + + K  D+    IK +++   D   L     L Q    E+N + S
Sbjct: 270 NTIRGLEETIIEKDDNLKKQKDE----IKTLNNNLNDSDHLGSEFLLLQNKLKEKNSQIS 325

Query: 346 LAGMESIYQLTRIVVEKTR-DLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMS 404
           +     I         KTR + +QK+  +   L E + Q+ K  ++I  L     SK +S
Sbjct: 326 VLENNLIDSKNTATELKTRLENLQKEYDD--KLREKINQIHKLDDNIKQLKSERDSKYVS 383

Query: 405 VDPSSKTNELF-KVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGA 463
           +D + K  + F ++ EN    A +D K S++ ++ K+              D+I  L+  
Sbjct: 384 LDTNDKVRKDFERMRENN---ANLDSKLSQISNENKLF------------RDKISKLSNQ 428

Query: 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANES 523
           L++  +    ++  ++  ++E+   ++  +E+  A  K    R K+   + E +R  N++
Sbjct: 429 LDDTKRERDNQVELMKRRIDEIITNNN--RENSIAADKSEEIREKQEAHINELQRKLNDT 486

Query: 524 VEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKK 583
           ++   L I+                      VE +F A++   K+ELEE  Q L +SE+ 
Sbjct: 487 LKVQTLSIS---------------------TVEDKFKAEILKTKKELEENAQKLQKSEEL 525

Query: 584 LG-FKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEFE 630
           +   K +       A +   K L   D   + L++ + EL +++   E
Sbjct: 526 VKELKRQVIENTTNASERNSKRLETKDKEINLLKNDIIELKNKINSLE 573


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.126    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,966,986
Number of Sequences: 539616
Number of extensions: 9089282
Number of successful extensions: 74520
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 3365
Number of HSP's that attempted gapping in prelim test: 52709
Number of HSP's gapped (non-prelim): 14618
length of query: 678
length of database: 191,569,459
effective HSP length: 124
effective length of query: 554
effective length of database: 124,657,075
effective search space: 69060019550
effective search space used: 69060019550
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)