Query 005767
Match_columns 678
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 46136
Date Thu Mar 28 13:28:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 98.5 0.0043 9.3E-08 70.3 58.4 95 237-333 359-463 (880)
2 TIGR02168 SMC_prok_B chromosom 98.4 0.0075 1.6E-07 68.2 48.5 8 307-314 506-513 (1179)
3 COG1196 Smc Chromosome segrega 98.2 0.039 8.4E-07 65.8 53.8 81 465-545 694-774 (1163)
4 PF10174 Cast: RIM-binding pro 98.2 0.034 7.3E-07 64.7 49.1 413 95-628 109-539 (775)
5 TIGR00606 rad50 rad50. This fa 98.0 0.086 1.9E-06 63.6 54.5 115 194-336 576-692 (1311)
6 TIGR02169 SMC_prok_A chromosom 97.8 0.11 2.4E-06 59.5 54.6 25 608-632 887-911 (1164)
7 PRK02224 chromosome segregatio 97.6 0.22 4.7E-06 56.9 53.7 73 472-545 550-622 (880)
8 KOG0161 Myosin class II heavy 97.6 0.44 9.6E-06 60.4 46.5 318 202-586 1227-1544(1930)
9 KOG0161 Myosin class II heavy 97.6 0.47 1E-05 60.2 50.7 144 458-612 1399-1549(1930)
10 TIGR02169 SMC_prok_A chromosom 97.4 0.48 1E-05 54.5 49.8 42 502-543 738-779 (1164)
11 COG1196 Smc Chromosome segrega 96.4 3.6 7.9E-05 49.7 45.8 47 231-277 429-475 (1163)
12 PF07888 CALCOCO1: Calcium bin 96.3 1.3 2.8E-05 50.4 24.0 71 562-633 284-387 (546)
13 PHA02562 46 endonuclease subun 96.2 2.5 5.4E-05 45.7 25.6 95 187-289 298-392 (562)
14 KOG0994 Extracellular matrix g 96.1 5.6 0.00012 49.2 32.4 207 373-628 1416-1637(1758)
15 KOG4674 Uncharacterized conser 95.7 9.8 0.00021 48.8 45.9 451 32-575 29-503 (1822)
16 TIGR00606 rad50 rad50. This fa 95.4 9.6 0.00021 46.7 50.7 130 257-393 746-878 (1311)
17 PRK04863 mukB cell division pr 95.4 11 0.00024 47.5 36.2 29 190-218 309-337 (1486)
18 PF00261 Tropomyosin: Tropomyo 95.4 3.4 7.4E-05 41.4 28.4 219 236-546 3-221 (237)
19 PF05701 WEMBL: Weak chloropla 95.3 6.3 0.00014 44.1 39.2 144 464-607 279-439 (522)
20 PF12718 Tropomyosin_1: Tropom 95.3 2.8 6.1E-05 39.8 19.2 140 468-629 2-141 (143)
21 PF12128 DUF3584: Protein of u 95.1 11 0.00025 45.9 44.7 162 462-634 624-795 (1201)
22 COG4942 Membrane-bound metallo 95.1 7.2 0.00016 43.5 26.0 74 473-546 182-255 (420)
23 PRK03918 chromosome segregatio 95.0 9 0.00019 44.0 55.3 22 556-577 682-703 (880)
24 PF01576 Myosin_tail_1: Myosin 94.9 0.0073 1.6E-07 70.2 0.0 229 32-289 161-404 (859)
25 PF10174 Cast: RIM-binding pro 94.8 11 0.00025 44.6 34.6 360 230-626 339-758 (775)
26 PRK11637 AmiB activator; Provi 94.8 1.2 2.5E-05 47.8 16.0 89 195-283 166-254 (428)
27 PRK03918 chromosome segregatio 94.7 10 0.00022 43.5 54.5 15 530-544 586-600 (880)
28 PF00261 Tropomyosin: Tropomyo 94.5 4.5 9.7E-05 40.6 18.5 163 461-634 31-193 (237)
29 PF15619 Lebercilin: Ciliary p 94.3 6.2 0.00014 39.4 21.3 162 464-629 10-190 (194)
30 PRK09039 hypothetical protein; 94.2 5 0.00011 42.7 18.9 101 472-576 45-152 (343)
31 KOG0250 DNA repair protein RAD 92.3 35 0.00077 42.1 28.4 77 462-538 361-438 (1074)
32 KOG4674 Uncharacterized conser 91.8 51 0.0011 42.8 47.4 322 213-585 395-741 (1822)
33 PF05701 WEMBL: Weak chloropla 91.1 30 0.00065 38.9 46.3 121 459-580 379-521 (522)
34 PF10481 CENP-F_N: Cenp-F N-te 91.1 3.2 7E-05 44.3 12.2 134 29-181 17-161 (307)
35 PHA02562 46 endonuclease subun 90.8 28 0.00061 37.9 26.6 38 510-547 374-411 (562)
36 TIGR01843 type_I_hlyD type I s 90.4 24 0.00051 36.5 19.2 79 502-580 145-229 (423)
37 PF01576 Myosin_tail_1: Myosin 90.2 0.087 1.9E-06 61.6 0.0 358 186-632 122-483 (859)
38 PF03148 Tektin: Tektin family 89.7 34 0.00073 37.1 20.2 185 98-291 121-346 (384)
39 PF13514 AAA_27: AAA domain 89.1 62 0.0013 39.3 51.1 109 170-285 593-710 (1111)
40 PF08317 Spc7: Spc7 kinetochor 87.8 26 0.00056 36.9 16.0 92 455-546 173-268 (325)
41 PF04156 IncA: IncA protein; 87.1 28 0.00061 33.1 15.0 101 474-585 82-182 (191)
42 PRK11637 AmiB activator; Provi 87.1 48 0.001 35.8 25.0 57 231-287 58-114 (428)
43 KOG0612 Rho-associated, coiled 87.1 96 0.0021 39.2 34.9 64 253-316 492-555 (1317)
44 KOG0978 E3 ubiquitin ligase in 86.9 75 0.0016 37.8 28.2 146 454-631 453-622 (698)
45 PF00038 Filament: Intermediat 86.5 40 0.00087 34.3 24.4 263 33-317 28-296 (312)
46 PF10168 Nup88: Nuclear pore c 86.1 42 0.0009 39.6 17.8 164 455-629 535-704 (717)
47 PF12128 DUF3584: Protein of u 86.1 97 0.0021 38.3 50.3 160 109-292 492-665 (1201)
48 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.8 6.4 0.00014 36.4 9.2 72 229-303 61-132 (132)
49 PF12325 TMF_TATA_bd: TATA ele 85.7 17 0.00038 34.1 12.0 71 464-534 28-108 (120)
50 PF11559 ADIP: Afadin- and alp 85.5 23 0.00051 33.0 12.8 53 189-245 32-84 (151)
51 PRK04863 mukB cell division pr 85.4 1.2E+02 0.0026 38.8 36.7 160 453-634 436-603 (1486)
52 PF15070 GOLGA2L5: Putative go 85.4 82 0.0018 36.8 29.9 122 464-593 85-227 (617)
53 PRK04778 septation ring format 85.1 74 0.0016 36.1 32.9 153 461-635 350-508 (569)
54 PF09325 Vps5: Vps5 C terminal 84.3 41 0.00089 32.5 20.6 69 473-544 135-203 (236)
55 PF15066 CAGE1: Cancer-associa 84.1 45 0.00097 38.2 16.2 120 463-587 387-518 (527)
56 TIGR02680 conserved hypothetic 83.9 1.3E+02 0.0028 37.9 22.0 163 450-632 215-383 (1353)
57 PF09726 Macoilin: Transmembra 83.9 1E+02 0.0022 36.6 21.4 39 476-514 618-656 (697)
58 PF06008 Laminin_I: Laminin Do 82.4 60 0.0013 33.0 25.5 35 456-490 175-209 (264)
59 KOG0996 Structural maintenance 81.8 1.6E+02 0.0034 37.3 34.4 66 463-528 402-467 (1293)
60 PF05557 MAD: Mitotic checkpoi 80.6 1.2 2.6E-05 50.9 2.9 46 371-416 256-301 (722)
61 KOG0977 Nuclear envelope prote 80.0 1.3E+02 0.0027 35.1 21.5 104 446-549 83-196 (546)
62 PF04065 Not3: Not1 N-terminal 79.7 16 0.00034 37.9 10.1 130 160-332 94-230 (233)
63 TIGR01010 BexC_CtrB_KpsE polys 78.4 51 0.0011 34.6 13.6 56 519-574 174-234 (362)
64 TIGR02977 phageshock_pspA phag 78.2 78 0.0017 31.7 21.4 120 457-583 15-135 (219)
65 COG1579 Zn-ribbon protein, pos 77.1 1E+02 0.0022 32.4 15.9 114 462-580 27-143 (239)
66 PF07439 DUF1515: Protein of u 77.0 22 0.00047 33.8 9.3 70 462-543 4-78 (112)
67 PF10498 IFT57: Intra-flagella 76.9 87 0.0019 34.3 15.1 241 324-580 24-320 (359)
68 PF09730 BicD: Microtubule-ass 76.6 85 0.0018 37.5 15.9 106 464-569 32-168 (717)
69 PF04012 PspA_IM30: PspA/IM30 76.2 82 0.0018 30.9 14.7 115 231-356 73-188 (221)
70 PF05557 MAD: Mitotic checkpoi 75.6 14 0.00031 42.6 9.4 73 249-321 358-430 (722)
71 PF09726 Macoilin: Transmembra 75.5 1.8E+02 0.0039 34.5 20.7 65 551-615 542-614 (697)
72 PRK09039 hypothetical protein; 75.2 95 0.0021 33.4 14.7 97 189-285 75-181 (343)
73 cd07596 BAR_SNX The Bin/Amphip 74.4 56 0.0012 30.6 11.5 63 213-283 104-166 (218)
74 PF04012 PspA_IM30: PspA/IM30 73.7 95 0.0021 30.5 20.8 109 462-584 26-135 (221)
75 KOG0982 Centrosomal protein Nu 73.7 54 0.0012 37.3 12.8 57 469-525 300-356 (502)
76 PRK10698 phage shock protein P 73.5 1.1E+02 0.0024 31.1 21.4 168 457-634 15-183 (222)
77 KOG0243 Kinesin-like protein [ 73.3 2.2E+02 0.0048 35.6 18.5 119 466-588 404-524 (1041)
78 KOG0996 Structural maintenance 73.1 2.7E+02 0.0059 35.5 47.2 169 451-631 774-956 (1293)
79 COG2433 Uncharacterized conser 71.2 60 0.0013 38.3 12.8 76 508-584 429-504 (652)
80 PF04912 Dynamitin: Dynamitin 71.2 1E+02 0.0023 33.2 14.0 76 290-384 312-387 (388)
81 COG4717 Uncharacterized conser 70.3 1.1E+02 0.0025 37.5 15.0 55 29-83 187-241 (984)
82 PF06160 EzrA: Septation ring 69.9 2.1E+02 0.0045 32.7 32.5 58 524-581 377-434 (560)
83 PF07888 CALCOCO1: Calcium bin 69.1 2.3E+02 0.0051 33.1 35.9 50 268-317 282-331 (546)
84 smart00787 Spc7 Spc7 kinetocho 69.0 78 0.0017 33.9 12.3 84 455-538 168-255 (312)
85 PF12329 TMF_DNA_bd: TATA elem 67.5 35 0.00077 29.4 7.8 51 252-302 2-52 (74)
86 TIGR02971 heterocyst_DevB ABC 65.9 1.6E+02 0.0035 30.1 15.5 69 509-578 91-159 (327)
87 PF10146 zf-C4H2: Zinc finger- 65.2 1.8E+02 0.0038 30.2 15.2 101 468-576 3-103 (230)
88 smart00502 BBC B-Box C-termina 64.0 93 0.002 26.6 14.4 98 464-585 5-103 (127)
89 TIGR03545 conserved hypothetic 64.0 64 0.0014 37.1 11.2 109 471-587 162-274 (555)
90 PRK10884 SH3 domain-containing 63.7 77 0.0017 32.2 10.6 68 468-538 95-162 (206)
91 KOG0971 Microtubule-associated 63.6 3.9E+02 0.0084 33.6 26.8 75 31-105 232-309 (1243)
92 KOG0612 Rho-associated, coiled 63.4 4.2E+02 0.0092 34.0 34.1 79 37-119 451-534 (1317)
93 PLN03229 acetyl-coenzyme A car 62.8 63 0.0014 38.8 11.1 96 26-121 458-572 (762)
94 PF06419 COG6: Conserved oligo 62.5 1.8E+02 0.004 33.6 14.5 83 206-288 13-99 (618)
95 PF05667 DUF812: Protein of un 62.5 3.1E+02 0.0067 32.1 21.2 132 461-592 323-471 (594)
96 PF04111 APG6: Autophagy prote 60.5 2.1E+02 0.0046 30.5 13.6 47 469-515 46-92 (314)
97 PF10211 Ax_dynein_light: Axon 59.0 1.4E+02 0.0031 29.7 11.3 106 194-314 65-187 (189)
98 PF08317 Spc7: Spc7 kinetochor 58.4 2.5E+02 0.0055 29.8 25.7 24 463-486 72-95 (325)
99 PF07200 Mod_r: Modifier of ru 57.9 84 0.0018 29.2 9.1 71 196-267 18-88 (150)
100 PF11932 DUF3450: Protein of u 57.8 2.2E+02 0.0047 28.9 15.8 65 463-527 46-110 (251)
101 KOG4460 Nuclear pore complex, 57.5 3.1E+02 0.0066 32.7 14.9 122 464-585 564-686 (741)
102 PF11932 DUF3450: Protein of u 57.5 81 0.0017 31.9 9.6 60 216-275 38-97 (251)
103 PF05103 DivIVA: DivIVA protei 56.2 13 0.00028 33.2 3.4 109 453-581 19-127 (131)
104 PRK10803 tol-pal system protei 55.5 46 0.00099 34.4 7.6 52 462-513 43-94 (263)
105 TIGR03185 DNA_S_dndD DNA sulfu 55.2 3.8E+02 0.0083 30.9 25.4 14 298-311 481-494 (650)
106 PF04111 APG6: Autophagy prote 55.1 95 0.0021 33.1 10.0 86 194-279 8-95 (314)
107 PRK12704 phosphodiesterase; Pr 54.9 86 0.0019 35.7 10.2 17 301-317 132-148 (520)
108 PF10805 DUF2730: Protein of u 54.8 60 0.0013 29.5 7.4 28 270-297 73-100 (106)
109 PF07106 TBPIP: Tat binding pr 54.3 86 0.0019 29.9 8.7 22 269-290 116-137 (169)
110 PF08614 ATG16: Autophagy prot 54.1 67 0.0014 31.5 8.1 68 230-297 112-179 (194)
111 cd09238 V_Alix_like_1 Protein- 53.2 2E+02 0.0043 30.7 12.0 129 27-198 192-337 (339)
112 PF07106 TBPIP: Tat binding pr 53.1 1.2E+02 0.0026 28.9 9.5 82 464-545 77-161 (169)
113 PF05667 DUF812: Protein of un 53.1 4.4E+02 0.0095 31.0 16.5 51 346-396 446-512 (594)
114 KOG0963 Transcription factor/C 52.9 4.7E+02 0.01 31.3 27.1 110 455-577 228-340 (629)
115 PLN03188 kinesin-12 family pro 52.6 6.3E+02 0.014 32.7 19.6 81 552-632 1153-1240(1320)
116 KOG0995 Centromere-associated 52.6 4.6E+02 0.01 31.1 35.7 52 498-552 489-540 (581)
117 PF05622 HOOK: HOOK protein; 52.5 4.6 0.0001 46.4 0.0 37 616-656 635-671 (713)
118 PF13166 AAA_13: AAA domain 52.3 4.1E+02 0.0088 30.3 15.1 37 184-220 366-402 (712)
119 PF03148 Tektin: Tektin family 52.2 3.5E+02 0.0076 29.5 22.5 143 160-305 171-326 (384)
120 KOG0963 Transcription factor/C 50.5 5.1E+02 0.011 31.0 31.8 133 459-591 196-354 (629)
121 PF06810 Phage_GP20: Phage min 50.4 1.7E+02 0.0037 28.4 10.1 49 239-287 18-69 (155)
122 KOG0980 Actin-binding protein 50.0 6.1E+02 0.013 31.7 24.8 74 193-269 471-547 (980)
123 KOG0971 Microtubule-associated 50.0 6.4E+02 0.014 31.9 33.7 295 264-629 233-544 (1243)
124 COG2433 Uncharacterized conser 50.0 2.4E+02 0.0051 33.7 12.7 41 458-498 421-461 (652)
125 smart00787 Spc7 Spc7 kinetocho 49.4 3.7E+02 0.008 29.0 23.9 67 465-532 69-161 (312)
126 TIGR00634 recN DNA repair prot 48.8 4.5E+02 0.0098 29.8 24.7 38 501-541 304-341 (563)
127 PF15254 CCDC14: Coiled-coil d 48.3 4.7E+02 0.01 32.2 14.9 138 468-633 389-555 (861)
128 PF03962 Mnd1: Mnd1 family; I 48.3 2.9E+02 0.0064 27.5 12.3 89 450-542 60-155 (188)
129 KOG2129 Uncharacterized conser 48.0 5E+02 0.011 30.1 16.8 148 476-632 132-321 (552)
130 TIGR02231 conserved hypothetic 47.9 1.2E+02 0.0027 33.6 9.9 45 538-582 126-173 (525)
131 KOG0977 Nuclear envelope prote 47.4 5.4E+02 0.012 30.3 26.6 92 202-304 99-190 (546)
132 PRK04406 hypothetical protein; 47.2 1.2E+02 0.0027 26.5 7.8 52 465-516 3-54 (75)
133 TIGR03319 YmdA_YtgF conserved 46.9 2.9E+02 0.0063 31.6 12.7 25 136-160 119-143 (514)
134 KOG4302 Microtubule-associated 46.7 5.9E+02 0.013 30.6 25.5 44 237-280 99-142 (660)
135 PF10186 Atg14: UV radiation r 46.1 3.1E+02 0.0068 27.2 16.9 23 468-490 22-44 (302)
136 COG1842 PspA Phage shock prote 46.1 3.6E+02 0.0078 27.9 13.9 28 510-537 19-46 (225)
137 PRK12704 phosphodiesterase; Pr 45.4 3.2E+02 0.0069 31.3 12.7 27 134-160 123-149 (520)
138 PRK11546 zraP zinc resistance 45.3 45 0.00097 32.6 5.3 52 234-285 61-112 (143)
139 PF08614 ATG16: Autophagy prot 44.9 3.1E+02 0.0068 26.9 11.6 52 477-528 92-143 (194)
140 PF13863 DUF4200: Domain of un 44.7 2.3E+02 0.005 25.3 15.6 77 472-549 6-83 (126)
141 PF05164 ZapA: Cell division p 44.2 1.7E+02 0.0037 24.5 8.1 62 559-627 23-89 (89)
142 cd07666 BAR_SNX7 The Bin/Amphi 44.1 4E+02 0.0088 27.9 19.8 28 270-297 55-82 (243)
143 PF15188 CCDC-167: Coiled-coil 43.9 62 0.0013 29.3 5.6 58 225-289 3-63 (85)
144 PF06428 Sec2p: GDP/GTP exchan 43.8 38 0.00083 31.1 4.4 78 558-636 12-91 (100)
145 KOG0018 Structural maintenance 43.7 8E+02 0.017 31.3 24.5 125 231-392 224-351 (1141)
146 PF10473 CENP-F_leu_zip: Leuci 43.7 3.2E+02 0.007 26.7 13.7 92 461-573 47-138 (140)
147 PF03915 AIP3: Actin interacti 42.9 1.9E+02 0.0042 32.5 10.4 198 110-317 77-316 (424)
148 PRK14140 heat shock protein Gr 42.8 2.5E+02 0.0054 28.5 10.3 28 262-289 44-71 (191)
149 COG3883 Uncharacterized protei 42.8 4.6E+02 0.01 28.2 15.4 132 230-395 41-178 (265)
150 PF05010 TACC: Transforming ac 42.7 4E+02 0.0086 27.5 17.0 201 33-285 5-205 (207)
151 smart00721 BAR BAR domain. 42.5 3.2E+02 0.0069 26.3 13.5 103 189-317 121-238 (239)
152 PF02841 GBP_C: Guanylate-bind 41.3 4.3E+02 0.0094 27.5 13.7 109 463-574 187-297 (297)
153 PF15619 Lebercilin: Ciliary p 41.2 3.9E+02 0.0085 27.0 21.5 80 508-588 112-191 (194)
154 PF10498 IFT57: Intra-flagella 41.0 5.3E+02 0.012 28.4 16.1 90 456-545 224-317 (359)
155 PF08581 Tup_N: Tup N-terminal 40.5 2.7E+02 0.0058 24.8 10.9 68 466-543 4-71 (79)
156 PF10186 Atg14: UV radiation r 40.4 3.8E+02 0.0083 26.6 17.6 23 475-497 22-44 (302)
157 TIGR00293 prefoldin, archaeal 40.2 2.2E+02 0.0047 25.7 8.6 87 459-545 6-123 (126)
158 PF07889 DUF1664: Protein of u 39.6 3.6E+02 0.0077 26.0 11.2 65 206-280 36-100 (126)
159 PRK04778 septation ring format 39.2 6.4E+02 0.014 28.8 34.8 203 102-317 114-337 (569)
160 PF05266 DUF724: Protein of un 39.2 4.2E+02 0.0091 26.7 12.9 108 172-280 23-142 (190)
161 PF04859 DUF641: Plant protein 39.1 73 0.0016 30.7 5.7 50 229-285 75-124 (131)
162 PF08097 Toxin_26: Conotoxin T 37.8 12 0.00027 22.8 0.2 7 640-646 5-11 (11)
163 KOG4603 TBP-1 interacting prot 37.3 3E+02 0.0065 28.5 9.8 56 265-320 119-186 (201)
164 cd09234 V_HD-PTP_like Protein- 37.1 4E+02 0.0086 28.4 11.2 145 27-198 188-335 (337)
165 PRK00106 hypothetical protein; 36.3 4.9E+02 0.011 30.3 12.5 27 134-160 138-164 (535)
166 COG1842 PspA Phage shock prote 36.1 5.1E+02 0.011 26.8 21.1 153 463-634 28-183 (225)
167 PF05529 Bap31: B-cell recepto 35.8 1.8E+02 0.0039 28.2 7.9 76 180-269 107-182 (192)
168 KOG0933 Structural maintenance 35.7 1.1E+03 0.023 30.3 32.2 61 338-398 753-813 (1174)
169 PRK10869 recombination and rep 35.5 7.4E+02 0.016 28.5 24.1 100 459-584 265-364 (553)
170 KOG2904 Predicted methyltransf 35.4 15 0.00034 39.7 0.7 28 638-665 100-132 (328)
171 PF05008 V-SNARE: Vesicle tran 35.3 2.5E+02 0.0054 23.4 7.7 70 239-310 4-74 (79)
172 PF04156 IncA: IncA protein; 34.5 4.2E+02 0.0091 25.3 15.6 82 465-546 80-161 (191)
173 TIGR01837 PHA_granule_1 poly(h 34.2 3.9E+02 0.0084 24.9 9.5 99 181-289 13-116 (118)
174 PF06810 Phage_GP20: Phage min 34.1 4E+02 0.0088 25.9 9.9 126 464-623 4-129 (155)
175 TIGR02231 conserved hypothetic 33.5 1.6E+02 0.0034 32.9 7.9 34 556-589 73-106 (525)
176 PF05957 DUF883: Bacterial pro 33.2 2.3E+02 0.0049 24.8 7.3 14 642-655 67-81 (94)
177 PF10234 Cluap1: Clusterin-ass 32.9 2.4E+02 0.0051 30.2 8.7 59 456-514 159-217 (267)
178 PF04011 LemA: LemA family; I 32.8 4.7E+02 0.01 25.4 11.1 87 457-545 50-141 (186)
179 PF10805 DUF2730: Protein of u 31.8 2.1E+02 0.0046 26.0 7.2 63 248-310 35-99 (106)
180 KOG0239 Kinesin (KAR3 subfamil 31.7 8.8E+02 0.019 29.0 13.8 62 471-532 208-272 (670)
181 PRK10884 SH3 domain-containing 31.4 4.7E+02 0.01 26.7 10.2 24 470-493 90-113 (206)
182 PF04949 Transcrip_act: Transc 31.0 2.9E+02 0.0064 27.8 8.4 39 533-571 38-76 (159)
183 PF04508 Pox_A_type_inc: Viral 31.0 47 0.001 24.0 2.2 17 613-629 4-20 (23)
184 PF14193 DUF4315: Domain of un 30.9 87 0.0019 28.1 4.4 53 264-316 3-60 (83)
185 KOG3758 Uncharacterized conser 30.8 6.6E+02 0.014 30.2 12.4 80 208-287 48-131 (655)
186 PF10303 DUF2408: Protein of u 30.3 2.9E+02 0.0063 26.4 8.1 96 97-206 4-99 (134)
187 PF10481 CENP-F_N: Cenp-F N-te 30.3 7.8E+02 0.017 27.2 12.8 113 473-599 18-134 (307)
188 PF06005 DUF904: Protein of un 30.0 3.8E+02 0.0082 23.4 8.5 64 251-317 7-70 (72)
189 PF12329 TMF_DNA_bd: TATA elem 29.9 2.6E+02 0.0057 24.2 7.1 29 261-289 39-67 (74)
190 cd09235 V_Alix Middle V-domain 29.9 7.2E+02 0.016 26.6 19.1 29 197-225 193-221 (339)
191 COG4026 Uncharacterized protei 29.8 2.4E+02 0.0053 30.2 8.1 59 255-316 146-207 (290)
192 PF09731 Mitofilin: Mitochondr 29.7 8.6E+02 0.019 27.5 19.3 39 464-502 249-288 (582)
193 KOG1962 B-cell receptor-associ 29.6 3.5E+02 0.0076 28.3 9.1 40 181-220 104-145 (216)
194 PF04102 SlyX: SlyX; InterPro 29.6 2.6E+02 0.0055 23.8 6.9 42 475-516 6-47 (69)
195 PRK14141 heat shock protein Gr 29.5 3.3E+02 0.0071 28.1 8.8 16 341-356 112-127 (209)
196 PF06548 Kinesin-related: Kine 29.5 9.7E+02 0.021 28.0 31.2 116 510-631 346-469 (488)
197 PRK09841 cryptic autophosphory 29.5 6.9E+02 0.015 29.4 12.4 32 488-519 268-299 (726)
198 KOG1003 Actin filament-coating 29.4 6.9E+02 0.015 26.2 15.7 177 192-401 22-201 (205)
199 PF06637 PV-1: PV-1 protein (P 29.4 9.2E+02 0.02 27.7 13.8 69 67-166 330-398 (442)
200 PF08826 DMPK_coil: DMPK coile 28.5 1.7E+02 0.0037 25.1 5.6 35 597-631 26-60 (61)
201 KOG4360 Uncharacterized coiled 28.5 3.1E+02 0.0068 32.2 9.2 63 473-542 240-302 (596)
202 PF10224 DUF2205: Predicted co 28.5 2.4E+02 0.0052 25.3 6.8 44 470-513 20-63 (80)
203 KOG0244 Kinesin-like protein [ 28.5 2.3E+02 0.0051 34.9 8.7 118 199-319 488-605 (913)
204 COG1579 Zn-ribbon protein, pos 28.2 7.4E+02 0.016 26.2 21.2 82 463-544 49-132 (239)
205 PF07795 DUF1635: Protein of u 27.8 3.1E+02 0.0067 28.7 8.3 57 522-585 1-57 (214)
206 KOG3809 Microtubule-binding pr 27.6 7.1E+02 0.015 29.2 11.6 171 409-583 379-575 (583)
207 PRK02793 phi X174 lysis protei 27.5 2.6E+02 0.0055 24.2 6.6 7 273-279 19-25 (72)
208 PF08826 DMPK_coil: DMPK coile 27.4 3.4E+02 0.0073 23.3 7.1 52 230-281 4-58 (61)
209 PF09755 DUF2046: Uncharacteri 27.4 8.7E+02 0.019 26.8 28.4 142 471-634 147-299 (310)
210 PRK05431 seryl-tRNA synthetase 27.4 2.1E+02 0.0045 31.7 7.5 81 210-290 10-94 (425)
211 PRK02119 hypothetical protein; 27.3 2.5E+02 0.0054 24.4 6.5 9 273-281 20-28 (73)
212 PF14197 Cep57_CLD_2: Centroso 27.1 4.2E+02 0.009 23.0 8.0 53 577-629 14-66 (69)
213 TIGR01000 bacteriocin_acc bact 27.1 8.7E+02 0.019 26.7 14.2 111 468-578 167-315 (457)
214 PF06818 Fez1: Fez1; InterPro 26.6 7.5E+02 0.016 25.8 13.5 107 473-579 31-156 (202)
215 PF14992 TMCO5: TMCO5 family 26.5 5E+02 0.011 28.2 9.8 124 463-608 29-157 (280)
216 PF07058 Myosin_HC-like: Myosi 26.4 4.3E+02 0.0093 29.5 9.4 76 468-545 2-89 (351)
217 PF05278 PEARLI-4: Arabidopsis 26.0 2.6E+02 0.0056 30.1 7.6 66 232-304 191-256 (269)
218 KOG0999 Microtubule-associated 26.0 1.2E+03 0.027 28.1 14.7 78 470-547 111-219 (772)
219 PF10046 BLOC1_2: Biogenesis o 25.9 2.1E+02 0.0046 25.7 6.1 27 263-289 67-93 (99)
220 KOG0614 cGMP-dependent protein 25.8 1.2E+02 0.0025 36.0 5.4 48 229-276 26-73 (732)
221 PF14915 CCDC144C: CCDC144C pr 25.5 5.4E+02 0.012 28.4 9.9 80 229-308 160-246 (305)
222 cd08915 V_Alix_like Protein-in 25.4 8.2E+02 0.018 25.8 11.4 27 27-53 190-216 (342)
223 PRK14161 heat shock protein Gr 25.3 7.1E+02 0.015 25.0 10.9 40 250-289 14-53 (178)
224 TIGR03185 DNA_S_dndD DNA sulfu 25.0 1.1E+03 0.024 27.2 35.9 44 453-496 371-414 (650)
225 PF10168 Nup88: Nuclear pore c 24.5 1.3E+03 0.028 27.8 13.9 115 460-587 559-678 (717)
226 PRK13729 conjugal transfer pil 24.3 2.3E+02 0.0049 32.7 7.2 47 468-514 71-117 (475)
227 PF11559 ADIP: Afadin- and alp 23.7 6.1E+02 0.013 23.7 17.6 91 457-547 33-126 (151)
228 PRK04325 hypothetical protein; 23.5 3.4E+02 0.0073 23.6 6.6 14 252-265 27-40 (74)
229 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.5 6.1E+02 0.013 23.6 17.3 72 500-571 58-129 (132)
230 PF12072 DUF3552: Domain of un 23.5 7.4E+02 0.016 24.6 12.7 74 241-317 71-144 (201)
231 cd07596 BAR_SNX The Bin/Amphip 23.4 6.2E+02 0.013 23.7 19.9 68 474-544 118-185 (218)
232 PF10211 Ax_dynein_light: Axon 23.4 2.9E+02 0.0062 27.6 7.0 59 229-287 129-188 (189)
233 cd07307 BAR The Bin/Amphiphysi 23.3 5.3E+02 0.012 22.9 13.7 83 134-219 16-111 (194)
234 PF12777 MT: Microtubule-bindi 23.0 9.5E+02 0.021 25.7 11.4 90 465-568 14-103 (344)
235 KOG0964 Structural maintenance 23.0 1.7E+03 0.037 28.6 33.8 70 468-544 673-742 (1200)
236 PRK01156 chromosome segregatio 23.0 1.3E+03 0.029 27.4 53.2 15 615-629 714-728 (895)
237 PF10779 XhlA: Haemolysin XhlA 22.7 3.8E+02 0.0083 22.7 6.7 46 470-515 3-48 (71)
238 KOG0976 Rho/Rac1-interacting s 22.5 1.6E+03 0.036 28.3 32.9 234 31-305 114-373 (1265)
239 KOG0978 E3 ubiquitin ligase in 22.5 1.5E+03 0.032 27.7 37.0 96 534-630 345-450 (698)
240 KOG4677 Golgi integral membran 22.5 5.9E+02 0.013 29.8 9.8 126 470-616 306-437 (554)
241 PF02403 Seryl_tRNA_N: Seryl-t 22.1 3.6E+02 0.0079 23.7 6.7 69 463-531 33-104 (108)
242 PF07139 DUF1387: Protein of u 21.9 1.1E+03 0.024 26.0 11.3 115 523-651 154-279 (302)
243 PF12325 TMF_TATA_bd: TATA ele 21.8 5.1E+02 0.011 24.6 8.0 13 342-354 101-113 (120)
244 KOG3433 Protein involved in me 21.8 7.4E+02 0.016 25.9 9.6 107 231-337 85-200 (203)
245 PF07544 Med9: RNA polymerase 21.3 2.4E+02 0.0052 24.7 5.4 55 227-281 21-78 (83)
246 PRK01156 chromosome segregatio 21.1 1.4E+03 0.031 27.1 50.9 14 133-146 421-434 (895)
247 PRK11519 tyrosine kinase; Prov 21.0 1.2E+03 0.026 27.5 12.3 40 481-520 261-300 (719)
248 PLN02320 seryl-tRNA synthetase 20.9 3.8E+02 0.0081 31.0 8.1 80 209-290 74-158 (502)
249 PF04102 SlyX: SlyX; InterPro 20.8 3.5E+02 0.0076 23.0 6.1 31 250-280 20-50 (69)
250 PRK09413 IS2 repressor TnpA; R 20.7 1.9E+02 0.0041 26.3 4.8 31 467-497 72-102 (121)
251 TIGR01843 type_I_hlyD type I s 20.6 9.7E+02 0.021 24.9 19.2 33 548-580 204-236 (423)
252 KOG2669 Regulator of nuclear m 20.5 3E+02 0.0064 30.4 7.0 136 170-309 140-291 (325)
253 PF15456 Uds1: Up-regulated Du 20.5 3.5E+02 0.0076 25.8 6.6 71 563-633 24-104 (124)
254 PF06785 UPF0242: Uncharacteri 20.4 8.5E+02 0.018 27.6 10.3 85 229-313 129-218 (401)
255 PF07795 DUF1635: Protein of u 20.4 6.2E+02 0.013 26.6 8.9 25 163-187 99-123 (214)
256 PF05911 DUF869: Plant protein 20.3 1.6E+03 0.035 27.5 26.7 140 469-631 620-761 (769)
257 PF06785 UPF0242: Uncharacteri 20.3 1.3E+03 0.028 26.3 13.8 92 467-562 93-184 (401)
258 PRK00295 hypothetical protein; 20.3 4.7E+02 0.01 22.4 6.7 24 251-274 22-45 (68)
259 KOG0994 Extracellular matrix g 20.2 2.1E+03 0.045 28.6 44.8 69 130-201 1349-1425(1758)
260 PF13949 ALIX_LYPXL_bnd: ALIX 20.2 9.1E+02 0.02 24.4 19.2 32 51-82 22-53 (296)
261 PF13863 DUF4200: Domain of un 20.1 6.3E+02 0.014 22.6 10.3 25 290-314 95-119 (126)
262 PF05615 THOC7: Tho complex su 20.0 7.1E+02 0.015 23.1 10.0 69 522-590 46-117 (139)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=98.52 E-value=0.0043 Score=70.29 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=46.1
Q ss_pred hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH-------HHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 005767 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV-------NEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (678)
Q Consensus 237 s~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v-------~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L 309 (678)
..++.+++...+.++.+...+...+..+..++.+...++..+ +.|+..|..++....-|.+.++-+......+
T Consensus 359 ~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~ 438 (880)
T PRK02224 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTA 438 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443333 3455555555555555555555555555555
Q ss_pred HHHHhhhc---CCCccccccccccCCC
Q 005767 310 DDIIKIVD---DGNLDQSGLSESLFLP 333 (678)
Q Consensus 310 ~~vi~~vd---~~~~~~~~lsEs~f~~ 333 (678)
...+..+. .+.. -.+|.+.|.+
T Consensus 439 ~~~l~~~~~~l~~~~--Cp~C~r~~~~ 463 (880)
T PRK02224 439 RERVEEAEALLEAGK--CPECGQPVEG 463 (880)
T ss_pred HHHHHHHHHHHhccc--CCCCCCcCCC
Confidence 55555554 2322 2456666653
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.42 E-value=0.0075 Score=68.22 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q 005767 307 DQVDDIIK 314 (678)
Q Consensus 307 d~L~~vi~ 314 (678)
+.+.+++.
T Consensus 506 ~~v~~~i~ 513 (1179)
T TIGR02168 506 EGVKALLK 513 (1179)
T ss_pred hHHHHHHh
Confidence 34444443
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.17 E-value=0.039 Score=65.75 Aligned_cols=81 Identities=32% Similarity=0.377 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005767 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 465 E~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeA 544 (678)
.+.+..+...+.+++..+...+-+.+.++........++.+...++++|++.-.-+..+.+.+-..+...++++..|...
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (1163)
T COG1196 694 KNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555666666666666666666677777778888887777777777777888888888888888655
Q ss_pred H
Q 005767 545 A 545 (678)
Q Consensus 545 c 545 (678)
.
T Consensus 774 ~ 774 (1163)
T COG1196 774 L 774 (1163)
T ss_pred H
Confidence 4
No 4
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.16 E-value=0.034 Score=64.68 Aligned_cols=413 Identities=21% Similarity=0.276 Sum_probs=229.4
Q ss_pred ccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 005767 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (678)
Q Consensus 95 ~~~~s~el~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP 174 (678)
.|+.-+.+..++.-+|..++.++..-+.=+..-.+++-.-..++....+|..-.-|| -..|+|
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L-----------------~~~g~~ 171 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML-----------------QSKGLS 171 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhcCCc
Confidence 444445555556666666666655433222222233333334444555555544444 123344
Q ss_pred CCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHH
Q 005767 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLE 254 (678)
Q Consensus 175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~ 254 (678)
. +-.+=..++.|-|-..+-.+-.|-..+....+.++.+|++|.+|+ +. ...++.-+.+.
T Consensus 172 ~--~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~-~~------------------~~~~a~t~alq 230 (775)
T PF10174_consen 172 A--EAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL-QM------------------ERDDAETEALQ 230 (775)
T ss_pred c--cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hc------------------CCCchhHHHHH
Confidence 3 111223456677777888888898899999999999999887765 32 23344455788
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCc
Q 005767 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQ 334 (678)
Q Consensus 255 k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~~~~~~~lsEs~f~~~ 334 (678)
+-+..||.+|+.+|+-+..|.+-|..|...+......|..+..+|..+..-...+-+=++.+.
T Consensus 231 ~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~----------------- 293 (775)
T PF10174_consen 231 TVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLK----------------- 293 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHH-----------------
Confidence 889999999999999777777777777666655556677777777766655554433222222
Q ss_pred cchhHHHHHHHHhhhh-hHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHH---HHHHHhhhhcccCCCCc
Q 005767 335 ETDMEENIRASLAGME-SIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS---LLRSALSKRMSVDPSSK 410 (678)
Q Consensus 335 etd~ee~l~asl~~~~-sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kEn~dI~s---LLR~AL~EKea~d~~qk 410 (678)
.-|...+ -|+.+.+...++.+.+.++ +.++..|-.++.....++...-+ =||.=|-++..
T Consensus 294 ---------~eL~rk~~E~~~~qt~l~~~~~~~~d~-r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~------ 357 (775)
T PF10174_consen 294 ---------LELSRKKSELEALQTRLETLEEQDSDM-RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNS------ 357 (775)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------
Confidence 1122333 3555666666666666666 55555555444443333221110 01111111111
Q ss_pred hhhHHHHhhhhhhhhccccccccccCCCCCCCCccccCCCcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005767 411 TNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESS 490 (678)
Q Consensus 411 ~s~llQiAE~GLq~vGfgF~~~~~~g~g~~~~S~d~~~~~~~ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~ 490 (678)
.+.-.... ...+..-+--++.||.+|+-.++-.-.++.
T Consensus 358 -------------------------------~l~kk~~~-----------~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~ 395 (775)
T PF10174_consen 358 -------------------------------QLEKKQAQ-----------IEKLQEEKSRLQGEIEDLRDMLDKKERKIN 395 (775)
T ss_pred -------------------------------HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 011122222333444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005767 491 LLKEHLEAQAKELSHRMKRIEELEEKERIA----NESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSL 566 (678)
Q Consensus 491 ~Lq~l~e~QaKeIa~~~~~IkeLEErErv~----~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~L 566 (678)
.|+.-++.=.--+.....+... +++|+. ..+.+++...|..+-.|-.||....... .....++...++..+
T Consensus 396 ~Lq~kie~Lee~l~ekd~ql~~--~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~---r~~~e~e~~Eele~~ 470 (775)
T PF10174_consen 396 VLQKKIENLEEQLREKDRQLDE--EKERLSSQADSSNEDEALETLEEALREKERLQERLEEQ---RERAEKERQEELETY 470 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4444422222222222232222 344444 3456777799999999999999998633 556678888889999
Q ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHh---hhhhhhhhHHH-------HHHHHHHHHhHhh
Q 005767 567 KQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKS---LRLADTRASRL-------RDRVEELSHQLEE 628 (678)
Q Consensus 567 kqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkS---LkLAD~RaA~L-------ReRIEELtRQLEE 628 (678)
+.++..++..+....++|-=| ....+.+++-|-+- .-=.|++..+| +++++-|.+|+.-
T Consensus 471 ~~e~~~lk~~~~~LQ~eLsEk---~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 471 QKELKELKAKLESLQKELSEK---ELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHHHHHHHHHHHhhhhHHH---HHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999887433 33444444433221 11124444433 6777777777766
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=0.086 Score=63.60 Aligned_cols=115 Identities=12% Similarity=0.191 Sum_probs=79.6
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 005767 194 NEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE 273 (678)
Q Consensus 194 neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~ 273 (678)
...+..+-+.++.+.+..+.+.... .++|..++.++.++......++...+.+.+ +
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el-----------~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~------------ 631 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKEL-----------ASLEQNKNHINNELESKEEQLSSYEDKLFD-V------------ 631 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C------------
Confidence 6667777777777777777766544 667888888888877776666655555441 1
Q ss_pred HHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhh--cCCCccccccccccCCCccc
Q 005767 274 LRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV--DDGNLDQSGLSESLFLPQET 336 (678)
Q Consensus 274 Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~v--d~~~~~~~~lsEs~f~~~et 336 (678)
.-++.|+..|..++.........++....+...+...|... ..++. -.||...|.+.+.
T Consensus 632 --~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~--C~LC~R~f~~eee 692 (1311)
T TIGR00606 632 --CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSC--CPVCQRVFQTEAE 692 (1311)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc--CCCCCCCCCChhH
Confidence 12346666666666666677777778888888888888888 54554 4788888885554
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.83 E-value=0.11 Score=59.50 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHHHHHHHhHhhhhhh
Q 005767 608 ADTRASRLRDRVEELSHQLEEFESR 632 (678)
Q Consensus 608 AD~RaA~LReRIEELtRQLEE~Esr 632 (678)
.......+...++++.+++++....
T Consensus 887 l~~~~~~l~~~~~~l~~~~~~l~~~ 911 (1164)
T TIGR02169 887 LKKERDELEAQLRELERKIEELEAQ 911 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=97.62 E-value=0.22 Score=56.91 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005767 472 QLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (678)
Q Consensus 472 qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAc 545 (678)
+.++.+....-++++++...+..-...-..+++.....+..|++ -.-+...++++-.++...+.++..|+...
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~~ 622 (880)
T PRK02224 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELN 622 (880)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333445555555555555555566666666666663 22222334444444445555555665543
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.62 E-value=0.44 Score=60.37 Aligned_cols=318 Identities=19% Similarity=0.222 Sum_probs=156.1
Q ss_pred hhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 005767 202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (678)
Q Consensus 202 ~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~ 281 (678)
.|++....+...-+...|-++++.--.++.+...++-|=.-..+..++...+.+++.+.+.+++.+.+....+...++++
T Consensus 1227 ~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~ 1306 (1930)
T KOG0161|consen 1227 EQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEEL 1306 (1930)
T ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455566666666666666666666655556677778888888888888888888877666666666555
Q ss_pred HHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHHHHH
Q 005767 282 EDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVE 361 (678)
Q Consensus 282 e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~~~~~~~lsEs~f~~~etd~ee~l~asl~~~~sI~eLa~ev~~ 361 (678)
-..+..--..+.-|..++.-++. .+..+-..++++-. ..-.-++.++.+...
T Consensus 1307 k~qle~e~r~k~~l~~~l~~l~~---e~~~l~e~leee~e----------------------~~~~l~r~lsk~~~e--- 1358 (1930)
T KOG0161|consen 1307 KRQLEEETREKSALENALRQLEH---ELDLLREQLEEEQE----------------------AKNELERKLSKANAE--- 1358 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH---
Confidence 43332222333333333322222 22222222221111 001111222222222
Q ss_pred HhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhccccccccccCCCCCC
Q 005767 362 KTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVP 441 (678)
Q Consensus 362 K~~~~~E~k~ke~k~Le~~V~~L~kEn~dI~sLLR~AL~EKea~d~~qk~s~llQiAE~GLq~vGfgF~~~~~~g~g~~~ 441 (678)
+..|. +.++..+....++-+++...|..=+.+-+. ..+........|.++=.... |+
T Consensus 1359 -~~~~~-------~k~e~~~~~~~eelee~kk~l~~~lq~~qe------~~e~~~~~~~~Lek~k~~l~-----~e---- 1415 (1930)
T KOG0161|consen 1359 -LAQWK-------KKFEEEVLQRLEELEELKKKLQQRLQELEE------QIEAANAKNASLEKAKNRLQ-----QE---- 1415 (1930)
T ss_pred -HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHH-----hH----
Confidence 22221 233333333333333333333333322111 11111111111111100000 00
Q ss_pred CCccccCCCcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005767 442 VSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIAN 521 (678)
Q Consensus 442 ~S~d~~~~~~~ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~ 521 (678)
.......-+.+.+.++.++.-+|....=+.+.++..+ .|....+...++..+....+..|...-.-+.
T Consensus 1416 -----l~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e-------~l~~Eld~aq~e~r~~~tel~kl~~~lee~~ 1483 (1930)
T KOG0161|consen 1416 -----LEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLE-------KLQAELDAAQRELRQLSTELQKLKNALEELL 1483 (1930)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 0000011222344445555444444444444444443 3444444455555555556666666666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 005767 522 ESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGF 586 (678)
Q Consensus 522 enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKl 586 (678)
+.+|+|--+-+....||.. +....-++|+. .+|+.+..-.|-.+..+++.+|++++..|+.
T Consensus 1484 e~~e~l~renk~l~~ei~d---l~~~~~e~~k~-v~elek~~r~le~e~~elQ~aLeElE~~le~ 1544 (1930)
T KOG0161|consen 1484 EQLEELRRENKNLSQEIED---LEEQKDEGGKR-VHELEKEKRRLEQEKEELQAALEELEAALEA 1544 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6777777777777777654 44566677777 7888888888888888888888888776554
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.60 E-value=0.47 Score=60.15 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 005767 458 YNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEE 537 (678)
Q Consensus 458 ~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeE 537 (678)
......++++-..+++|..+++- |.++....+....+++-.....+.+...+.-=+++-+++--.+....+.+
T Consensus 1399 ~~~~~~Lek~k~~l~~el~d~~~-------d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~te 1471 (1930)
T KOG0161|consen 1399 NAKNASLEKAKNRLQQELEDLQL-------DLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTE 1471 (1930)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344455555555555555444 44444444444445555555555544444333444455566666666777
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHH-------HHHHHHHHHHHhhhhhhh
Q 005767 538 ISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAA-------AAMTARDAAEKSLRLADT 610 (678)
Q Consensus 538 i~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAa-------AAMAAr~AAEkSLkLAD~ 610 (678)
+.+-+.+.+.-.+ ..++++..-..|.+++.+++..+.+.++.+.=.|.... --=+|-+.++.+|+.+|.
T Consensus 1472 l~kl~~~lee~~e----~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1472 LQKLKNALEELLE----QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 7777766665554 57777777788888888888888877776633322211 122344455555666655
Q ss_pred hh
Q 005767 611 RA 612 (678)
Q Consensus 611 Ra 612 (678)
..
T Consensus 1548 ~~ 1549 (1930)
T KOG0161|consen 1548 KK 1549 (1930)
T ss_pred HH
Confidence 54
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.36 E-value=0.48 Score=54.53 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005767 502 ELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKA 543 (678)
Q Consensus 502 eIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKe 543 (678)
++.....+++.++..-.-+...++.+...|.....++..+..
T Consensus 738 ~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~ 779 (1164)
T TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555555555555543
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.37 E-value=3.6 Score=49.66 Aligned_cols=47 Identities=32% Similarity=0.443 Sum_probs=20.1
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 005767 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQL 277 (678)
Q Consensus 231 qLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~ 277 (678)
.+++.+..++.+++..-..+..|...+..-...+.+++++...++..
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1163)
T COG1196 429 ELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475 (1163)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433333333
No 12
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.32 E-value=1.3 Score=50.42 Aligned_cols=71 Identities=30% Similarity=0.451 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh-cchHHHHHHHHHHH------------HHHHHhhhhhhh--------------hh--
Q 005767 562 QLSSLKQELEEAKQALSESEKKL-GFKEETAAAAMTAR------------DAAEKSLRLADT--------------RA-- 612 (678)
Q Consensus 562 qls~LkqELe~~K~aLeesn~KL-KlKEElAaAAMAAr------------~AAEkSLkLAD~--------------Ra-- 612 (678)
++..|+++|..+...+..|..+. .|+.||+.+++ .| .+|.--++|||. |.
T Consensus 284 e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~-~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l 362 (546)
T PF07888_consen 284 ENEALKEQLRSAQEQLQASQQEAELLRKELSDAVN-VRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQAL 362 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888887765 46788855443 33 466666667765 11
Q ss_pred ---HH-HHHHHHHHHHhHhhhhhhc
Q 005767 613 ---SR-LRDRVEELSHQLEEFESRE 633 (678)
Q Consensus 613 ---A~-LReRIEELtRQLEE~Esre 633 (678)
+. .+++|+.|++.+...+.+-
T Consensus 363 ~~~~e~~k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 363 QHSAEADKDEIEKLSRELQMLEEHL 387 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 12 2357888888887766553
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.17 E-value=2.5 Score=45.75 Aligned_cols=95 Identities=13% Similarity=0.243 Sum_probs=55.5
Q ss_pred HHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 005767 187 YGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE 266 (678)
Q Consensus 187 ygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~e 266 (678)
.+.+...++...++=.|++.......+..+.+++.+ ++...++.++..+..+.+.++++.+....-+.+|..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~--------~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~ 369 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN--------EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE 369 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777888888888888888887777776433 445555555555555555555554444444555555
Q ss_pred HHHhHHHHHHHHHHHHHHhhchh
Q 005767 267 IESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 267 le~E~~~Lk~~v~e~e~kl~~~e 289 (678)
++.....+-..+..++.+|.++.
T Consensus 370 l~~~~~~~~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 370 LQAEFVDNAEELAKLQDELDKIV 392 (562)
T ss_pred HHhhhhchHHHHHHHHHHHHHHH
Confidence 54444444444444444443333
No 14
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.10 E-value=5.6 Score=49.18 Aligned_cols=207 Identities=21% Similarity=0.278 Sum_probs=116.8
Q ss_pred HHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhccccccccccCCCCCCCCccccCCCcc
Q 005767 373 EVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMET 452 (678)
Q Consensus 373 e~k~Le~~V~~L~kEn~dI~sLLR~AL~EKea~d~~qk~s~llQiAE~GLq~vGfgF~~~~~~g~g~~~~S~d~~~~~~~ 452 (678)
.-+.....|.+-..|-+.+.++++-|.. ..++.-|-|+++|-++-
T Consensus 1416 ~A~~~~~~l~~~~ae~eq~~~~v~ea~~---------~aseA~~~Aq~~~~~a~-------------------------- 1460 (1758)
T KOG0994|consen 1416 MAGDADTQLRSKLAEAEQTLSMVREAKL---------SASEAQQSAQRALEQAN-------------------------- 1460 (1758)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHH--------------------------
Confidence 3456777788888888888899888876 45677788888875531
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHHH----HHHHHHHh
Q 005767 453 EEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQ--------AKELSHRMKRIEE----LEEKERIA 520 (678)
Q Consensus 453 ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~Q--------aKeIa~~~~~Ike----LEErErv~ 520 (678)
.-.+-|+...+.++.=|.+++.=|..--++-+..+.++++= ..+|.+++-.|++ |-+=+-|+
T Consensus 1461 ------as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL 1534 (1758)
T KOG0994|consen 1461 ------ASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAIL 1534 (1758)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 11345666666667767777766666666666655555432 2344444444443 22223444
Q ss_pred hhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH
Q 005767 521 NESVEGLMLDIAAA---EEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTA 597 (678)
Q Consensus 521 ~enVEeL~~dIkaa---EeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAA 597 (678)
++.+- ||+-| .+++.|=+.-|+.. +...++++.-|..-.+-...++.+|..++.-+.+-.++-+-+---
T Consensus 1535 ~~T~~----di~ra~~L~s~A~~a~~~A~~v----~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~ 1606 (1758)
T KOG0994|consen 1535 SRTKG----DIARAENLQSEAERARSRAEDV----KGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEE 1606 (1758)
T ss_pred Hhhhh----hHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44432 22222 23333333222222 111222222233333444455555666666555555555555555
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHhHhh
Q 005767 598 RDAAEKSLRLADTRASRLRDRVEELSHQLEE 628 (678)
Q Consensus 598 r~AAEkSLkLAD~RaA~LReRIEELtRQLEE 628 (678)
-+|||+-+.-|-.|.++|--++|+|.++.-+
T Consensus 1607 t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1607 TAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777777777888888888888877543
No 15
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.70 E-value=9.8 Score=48.78 Aligned_cols=451 Identities=18% Similarity=0.213 Sum_probs=200.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHH-------HHHHHhhhccchhH
Q 005767 32 FREVLAELN----RERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALR-------EKEEILRSNDKLST 100 (678)
Q Consensus 32 ~~~l~ael~----~er~~r~aae~s~~e~~~~~~rlkala~ea~~krde~~r~rd~a~r-------~ke~~~~~~~~~s~ 100 (678)
|.+-.++++ +--..+-.+|..++++..+..+|+.--.+...+++.+.-......- ++.+....-+.+..
T Consensus 29 l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~ 108 (1822)
T KOG4674|consen 29 LPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKL 108 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence 334445444 3335566788889999999999999888888887776665554322 23333333333333
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccc
Q 005767 101 EIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYT 180 (678)
Q Consensus 101 el~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYt 180 (678)
.+.++-..++++++|=..... .+.....-..++.+++.....=|.+..-+++-.-. +-.
T Consensus 109 ~~~~l~~~~se~~~qkr~l~~-------~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~--------------r~~ 167 (1822)
T KOG4674|consen 109 ENSQLRRAKSELQEQKRQLME-------LLERQKAELEALESENKDLNDQLKSSTKTLSELEA--------------RLQ 167 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 333333333333322221111 01112224555666666666555555544432111 111
Q ss_pred CchhHHHHhhhchhHHHHH---HHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHH
Q 005767 181 GLPAVVYGVIKRTNEIVEE---LVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSL 257 (678)
Q Consensus 181 Gl~avaygv~KR~neivee---l~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~ 257 (678)
+.++-.-.+=.+-+-.+-+ |.+++.--.+.-.-.-+...--.-+--|+|++|+.-+++++.+++.=.+-...|....
T Consensus 168 e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~ 247 (1822)
T KOG4674|consen 168 ETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQN 247 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111110 1111111111111111111111112234555555555555555555444444444444
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCccch
Q 005767 258 IEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETD 337 (678)
Q Consensus 258 ~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~~~~~~~lsEs~f~~~etd 337 (678)
.+-..+|-.+-.++..+++--.+++.++.. =-..+..|.++.+. +-++
T Consensus 248 ~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~--------------El~~q~kL~eL~ks------------------~~ee 295 (1822)
T KOG4674|consen 248 EELSKKIESLNLELSKLKDTAESSEEKFEK--------------ELSTQKKLNELWKS------------------KLEE 295 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--------------HHHHHHHHHHHHHH------------------HHHH
Confidence 444444444444444444444444433310 00111122222221 1123
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhHHH-------HHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCc
Q 005767 338 MEENIRASLAGMESIYQLTRIVVEKTRDL-------VQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSK 410 (678)
Q Consensus 338 ~ee~l~asl~~~~sI~eLa~ev~~K~~~~-------~E~k~ke~k~Le~~V~~L~kEn~dI~sLLR~AL~EKea~d~~qk 410 (678)
+..+...+..+...+.-|...+..-...+ ....++....++..|.+|..+-.|-+..+..++...+..
T Consensus 296 ~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s----- 370 (1822)
T KOG4674|consen 296 LSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVS----- 370 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhh-----
Confidence 33333334455555555554555444443 233444555777888888888888888888755533221
Q ss_pred hhhHHHHhhhhhhhhccccccccccCCCCCCCCccccCCCcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005767 411 TNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESS 490 (678)
Q Consensus 411 ~s~llQiAE~GLq~vGfgF~~~~~~g~g~~~~S~d~~~~~~~ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~ 490 (678)
+....|.++ .+.|+-| -++|+-=.-+.+-|+...++|-.++..|-.--.++.
T Consensus 371 --~~~a~~s~~-~~~~~sL-------------------------tk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~ 422 (1822)
T KOG4674|consen 371 --EKAALASSL-IRPGSSL-------------------------TKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVK 422 (1822)
T ss_pred --hHHHHHHhh-cccchhH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1222222 235555555555666666666555555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005767 491 LLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR---WKAAAEQEAAAGRAVEQEFVAQLSSLK 567 (678)
Q Consensus 491 ~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~R---WKeAcElEaeAGkaveqE~~~qls~Lk 567 (678)
..--.+..|..++++...++-.|...--+.+++ |.-+|.++-+ -...|+.|.-.=..-+..+..|+..|-
T Consensus 423 ~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~-------~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll 495 (1822)
T KOG4674|consen 423 QKAPILKEQRSELERMQETKAELSEELDFSNQK-------IQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLL 495 (1822)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555554444444444333333333 2222222222 223444555554555555666665555
Q ss_pred HHHHHHHH
Q 005767 568 QELEEAKQ 575 (678)
Q Consensus 568 qELe~~K~ 575 (678)
-|+++++.
T Consensus 496 ~el~e~~~ 503 (1822)
T KOG4674|consen 496 LELDELRK 503 (1822)
T ss_pred HHHHHHHh
Confidence 55555543
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.40 E-value=9.6 Score=46.75 Aligned_cols=130 Identities=14% Similarity=0.216 Sum_probs=56.7
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhc---hhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCC
Q 005767 257 LIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHR---PLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLP 333 (678)
Q Consensus 257 ~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r---~lL~dql~~v~~ihd~L~~vi~~vd~~~~~~~~lsEs~f~~ 333 (678)
+...+.++.+++.++..++..++.++..+..+.... .-|...+..+.++...+..+=+.|++-... ++.+.-.
T Consensus 746 ip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~---l~~~~~~- 821 (1311)
T TIGR00606 746 IPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK---LQGSDLD- 821 (1311)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccccc-
Confidence 333444555555555555555555555554443222 124555555555555555555555532221 1100000
Q ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHH
Q 005767 334 QETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS 393 (678)
Q Consensus 334 ~etd~ee~l~asl~~~~sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kEn~dI~s 393 (678)
. .+ ..|...+.....-++-...-...+..-.+....++..|...+..+..++-.+..
T Consensus 822 -~-s~-~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~ 878 (1311)
T TIGR00606 822 -R-TV-QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878 (1311)
T ss_pred -C-CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11 112222333333333222222333444445555666666666666666555555
No 17
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.39 E-value=11 Score=47.46 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=16.0
Q ss_pred hhchhHHHHHHHhhhhhhhhhhhHHHHHh
Q 005767 190 IKRTNEIVEELVGQIDATAKSRNDVREQM 218 (678)
Q Consensus 190 ~KR~neiveel~~Q~da~~k~rn~aReqm 218 (678)
+.|.++|+.++-.++....+.+..|+...
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyl 337 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHL 337 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666655555555555443
No 18
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.38 E-value=3.4 Score=41.40 Aligned_cols=219 Identities=18% Similarity=0.254 Sum_probs=128.8
Q ss_pred hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhh
Q 005767 236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKI 315 (678)
Q Consensus 236 is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~ 315 (678)
|..++.++-.....++.++..+...+.+....+.++..|..+|.-+|..|...+..-.-....|.-+.+-.+......+.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~ 82 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777788888888899999999999999999999999999988776655555555666666655555444444
Q ss_pred hcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHH
Q 005767 316 VDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLL 395 (678)
Q Consensus 316 vd~~~~~~~~lsEs~f~~~etd~ee~l~asl~~~~sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kEn~dI~sLL 395 (678)
+..... ..++.|..--..++-+-..+..+..|+. .-.+++.-++..+...
T Consensus 83 lE~r~~---------------~~eeri~~lE~~l~ea~~~~ee~e~k~~----E~~rkl~~~E~~Le~a----------- 132 (237)
T PF00261_consen 83 LENREQ---------------SDEERIEELEQQLKEAKRRAEEAERKYE----EVERKLKVLEQELERA----------- 132 (237)
T ss_dssp HHHHHH---------------HHHHHHHHCHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHH-----------
T ss_pred HHhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----------
Confidence 432111 1122222111111111111212222221 1111111111111111
Q ss_pred HHHhhhhcccCCCCchhhHHHHhhhhhhhhccccccccccCCCCCCCCccccCCCcchhhHHhhHHHHHHHHHHHHHHHH
Q 005767 396 RSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEI 475 (678)
Q Consensus 396 R~AL~EKea~d~~qk~s~llQiAE~GLq~vGfgF~~~~~~g~g~~~~S~d~~~~~~~ee~Ev~sLAsalE~~mK~~qlEI 475 (678)
-.=+..+++-++.+..++
T Consensus 133 --------------------------------------------------------------EeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 133 --------------------------------------------------------------EERAEAAESKIKELEEEL 150 (237)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------HHHHhhhchhHHHHHHHH
Confidence 111233344444444444
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005767 476 VELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAE 546 (678)
Q Consensus 476 ~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcE 546 (678)
..+...|..+-.-.+..-...+.=..+|..++.++++.|.|--++-.+|--|-..|...|.++..||....
T Consensus 151 ~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 151 KSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333333344456688889999999999999999999999999999999999998653
No 19
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.31 E-value=6.3 Score=44.07 Aligned_cols=144 Identities=24% Similarity=0.338 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005767 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKA 543 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKe 543 (678)
+...|.....|+.+.+..|+....|...|+..++-=-.+|..-..-|..|.+++....-.|..|-.++..+-.++.-=+.
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence 33445666677777777777777777777777776667777777788888888888888888887777666665533332
Q ss_pred HH-----------------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhh
Q 005767 544 AA-----------------EQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLR 606 (678)
Q Consensus 544 Ac-----------------ElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLk 606 (678)
+. ..|++.-+.........+.-+++|++.+|+.+..++.||..--+.+=||-|+..-|-..++
T Consensus 359 ~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 359 EEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIK 438 (522)
T ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2377777777777777899999999999999999999999888888888888877776666
Q ss_pred h
Q 005767 607 L 607 (678)
Q Consensus 607 L 607 (678)
.
T Consensus 439 ~ 439 (522)
T PF05701_consen 439 A 439 (522)
T ss_pred H
Confidence 4
No 20
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.26 E-value=2.8 Score=39.78 Aligned_cols=140 Identities=24% Similarity=0.342 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQ 547 (678)
Q Consensus 468 mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcEl 547 (678)
|.+|+.+.-...--++++.+.+--|-.......++|..+++.+..|| .++..+++.+..=+.+.+.
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE--------------~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLE--------------EELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence 66777888888888888888877777777777777777777777777 4566666666666777766
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhHh
Q 005767 548 EAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLE 627 (678)
Q Consensus 548 EaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA~LReRIEELtRQLE 627 (678)
--..+..++ -++..|..|-++|+.+...|..+..||.- |-..-+=.+|-.+-.+.|...+-.|+++|..|+.
T Consensus 68 ~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e-------~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 68 SEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLRE-------ADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 665555544 78888999999999999999999988852 2222234456666677788888888888888876
Q ss_pred hh
Q 005767 628 EF 629 (678)
Q Consensus 628 E~ 629 (678)
++
T Consensus 140 ~~ 141 (143)
T PF12718_consen 140 EA 141 (143)
T ss_pred Hh
Confidence 64
No 21
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.11 E-value=11 Score=45.91 Aligned_cols=162 Identities=22% Similarity=0.295 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005767 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELS-HRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR 540 (678)
Q Consensus 462 salE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa-~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~R 540 (678)
..++.-++..+.+|.+++..+..++.+....+.-...--.+.. .....-..++++-.-+.+.+..+...++...+|+..
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554444332222222222 223333455666677788888899999999999999
Q ss_pred HHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhh-h
Q 005767 541 WKAAAEQEAAAGR--------AVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADT-R 611 (678)
Q Consensus 541 WKeAcElEaeAGk--------aveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~-R 611 (678)
|+.++....-.-+ .+..+++.++..+++++...++. +++++..-- .++...=++ +=+|. +
T Consensus 704 ~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~---------~~~~~~~le-~~~~~eL~~-~GvD~~~ 772 (1201)
T PF12128_consen 704 LLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQE---------AKEQLKELE-QQYNQELAG-KGVDPER 772 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HHHHHHHHh-CCCCHHH
Confidence 9888766554433 23334444444444444443333 333332211 112222222 22455 8
Q ss_pred hHHHHHHHHHHHHhHhhhhhhcc
Q 005767 612 ASRLRDRVEELSHQLEEFESRED 634 (678)
Q Consensus 612 aA~LReRIEELtRQLEE~Esre~ 634 (678)
-..|+.+|+.|..+|...+.+..
T Consensus 773 I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 773 IQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 89999999999999999988874
No 22
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.08 E-value=7.2 Score=43.47 Aligned_cols=74 Identities=26% Similarity=0.250 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005767 473 LEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAE 546 (678)
Q Consensus 473 lEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcE 546 (678)
.|-.+|+..+.+.+.+-..|..+.++|.|-+.++...+...+.+-.-+..|=..|=..|.-+|.++++=+++++
T Consensus 182 aeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 182 AEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888999999999999999999999999999999999999999999999999999999886655544
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=94.96 E-value=9 Score=43.97 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005767 556 EQEFVAQLSSLKQELEEAKQAL 577 (678)
Q Consensus 556 eqE~~~qls~LkqELe~~K~aL 577 (678)
+.++.+++..|+++++.++..+
T Consensus 682 ~~~l~~~i~~l~~~i~~~~~~~ 703 (880)
T PRK03918 682 LEELEKRREEIKKTLEKLKEEL 703 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555444444333
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.88 E-value=0.0073 Score=70.18 Aligned_cols=229 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHH
Q 005767 32 FREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDE 111 (678)
Q Consensus 32 ~~~l~ael~~er~~r~aae~s~~e~~~~~~rlkala~ea~~krde~~r~rd~a~r~ke~~~~~~~~~s~el~~v~~~~de 111 (678)
+.+|.++|+..-+++-.+|...-.++..++-|++-+.+.=+.+.++ -..+.+|..++.++..+-++
T Consensus 161 ~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el--------------~~~k~kL~~E~~eL~~qLee 226 (859)
T PF01576_consen 161 LDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNEL--------------TEQKAKLQSENSELTRQLEE 226 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444444444444444443333333333 33445677777777776666
Q ss_pred HHHHHHHHhhhhcC-------CccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhh----cccCC---CCCCC-CCCCCCC
Q 005767 112 VVKQLDEVTKARDG-------SRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKIS----GKVSN---FKNFS-AGGLPRS 176 (678)
Q Consensus 112 ~~kq~d~~~~~r~~-------~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis----~k~s~---~k~f~-~~~lP~S 176 (678)
...++..+.+.+.. .+.+|++-++++..|.+.+.+.-+=+-.--+.+. ++..- +..+. -.-.-+
T Consensus 227 ~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k- 305 (859)
T PF01576_consen 227 AESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWK- 305 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHH-
Confidence 66666666554433 4445555666665555554444332211111111 11000 00000 011111
Q ss_pred ccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHH
Q 005767 177 QKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKS 256 (678)
Q Consensus 177 qKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~ 256 (678)
.||.+-. +-|++++-+ -.-...+.=.++.++++.-+. -+++|+.+-.+|-.||.-=...+++....
T Consensus 306 ~K~e~e~------~~~~EelEe----aKKkL~~~L~el~e~le~~~~----~~~~LeK~k~rL~~EleDl~~eLe~~~~~ 371 (859)
T PF01576_consen 306 KKYEEEA------EQRTEELEE----AKKKLERKLQELQEQLEEANA----KVSSLEKTKKRLQGELEDLTSELEKAQAA 371 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHh------hhhHHHHHH----HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1444211 112222111 111122233344555554443 35678888888877777777777776666
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 005767 257 LIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 257 ~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e 289 (678)
...-+.+...+.+.+.+++..++.+-..+..+.
T Consensus 372 ~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q 404 (859)
T PF01576_consen 372 AAELEKKQRKFDKQLAEWKAKVEELQAERDAAQ 404 (859)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666665554444333
No 25
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.84 E-value=11 Score=44.61 Aligned_cols=360 Identities=23% Similarity=0.267 Sum_probs=179.5
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 005767 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (678)
Q Consensus 230 SqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L 309 (678)
+.|-+-|-.||-++..+-+.++...+++..-....+-+.-|+..|++.++..+.++.-|...-.-|-+++. .=...|
T Consensus 339 ~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~---ekd~ql 415 (775)
T PF10174_consen 339 EMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR---EKDRQL 415 (775)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34666777778888888888888777777777777777778999999999998888655544333444432 122235
Q ss_pred HHHHhhhcCCCccccccccccCCCc-cchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhh
Q 005767 310 DDIIKIVDDGNLDQSGLSESLFLPQ-ETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEK 388 (678)
Q Consensus 310 ~~vi~~vd~~~~~~~~lsEs~f~~~-etd~ee~l~asl~~~~sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kEn 388 (678)
...-.++.. ..| +...+. -+.+|+-+...-.-...|-++-.....-...=.+.-+++.+.+..+|.+|-++-
T Consensus 416 ~~~k~Rl~~-~~d------~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL 488 (775)
T PF10174_consen 416 DEEKERLSS-QAD------SSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL 488 (775)
T ss_pred HHHHHHHhc-ccc------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555555554 332 111100 012222222222222222222111121222233555666777777777777765
Q ss_pred hhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhccccccccccCCCCCCCCccccCCCcchhhHHhhHHHHHHH--
Q 005767 389 EHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALEN-- 466 (678)
Q Consensus 389 ~dI~sLLR~AL~EKea~d~~qk~s~llQiAE~GLq~vGfgF~~~~~~g~g~~~~S~d~~~~~~~ee~Ev~sLAsalE~-- 466 (678)
.+-...|--+ . -....+|-.|+..-++==-+. -....-.+++..|-.-+..
T Consensus 489 sEk~~~l~~~-k-----------ee~s~l~s~~~K~~s~i~~l~---------------I~lEk~rek~~kl~~ql~k~~ 541 (775)
T PF10174_consen 489 SEKELQLEDA-K-----------EEASKLASSQEKKDSEIERLE---------------IELEKKREKHEKLEKQLEKLR 541 (775)
T ss_pred HHHHHHHHHh-h-----------hHHHHHhhccchhhhHHHHHH---------------HHHHHhhhHHHHHHHHHHHHH
Confidence 5544322211 0 011111111111110000000 0000111223333333322
Q ss_pred -----H--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhHHH-----
Q 005767 467 -----I--VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK-------ERIANESVEGL----- 527 (678)
Q Consensus 467 -----~--mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEEr-------Erv~~enVEeL----- 527 (678)
. +..+..++...+--++.+++|+++|-..+..--++-......|.+|+.. -...+.+++..
T Consensus 542 ~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~ 621 (775)
T PF10174_consen 542 ANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEEN 621 (775)
T ss_pred hCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHH
Confidence 0 1122233444444566667777777777777777777777777777654 12222233321
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHH-----------hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------
Q 005767 528 MLDIAAAEEEISRW--KAAAEQEAA-----------AGR---AVEQEFVAQLSSLKQELEEAKQALSESEK--------- 582 (678)
Q Consensus 528 ~~dIkaaEeEi~RW--KeAcElEae-----------AGk---aveqE~~~qls~LkqELe~~K~aLeesn~--------- 582 (678)
...=.+.-++..|= ..+.+.++. ++. ...+++...+..+++|++.++.-|.-+..
T Consensus 622 ~~~~~elleea~Ree~~~t~e~~l~~s~q~~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~L 701 (775)
T PF10174_consen 622 KRKRAELLEEALREEVSITEERELAQSQQKLAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQLESSQQSLMERDQEL 701 (775)
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 11011111122220 011222221 111 13445555566666666666654443333
Q ss_pred -------------hhcchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhH
Q 005767 583 -------------KLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQL 626 (678)
Q Consensus 583 -------------KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA~LReRIEELtRQL 626 (678)
=+++|-+-=.||++..+|-..-|.+.-+....-++.+.-|.|.-
T Consensus 702 ~~le~Errk~lEE~l~mKqeal~aAisekda~iAllE~~~~~~~~~q~e~~~l~rek 758 (775)
T PF10174_consen 702 NALEAERRKQLEEVLEMKQEALLAAISEKDANIALLELSSSKKKKTQEEVMALRREK 758 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCchhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 25677787788999999999999988887777777777766643
No 26
>PRK11637 AmiB activator; Provisional
Probab=94.78 E-value=1.2 Score=47.82 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=54.2
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHH
Q 005767 195 EIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLEL 274 (678)
Q Consensus 195 eiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~L 274 (678)
..--+++.++..+.+.-...+.+++..-=+..-...+++.....|......+......|.+.....+..+.+++++...|
T Consensus 166 ~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 166 QARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555444444444444444433444445566666666666667777777777777777777777777777677
Q ss_pred HHHHHHHHH
Q 005767 275 RQLVNEYED 283 (678)
Q Consensus 275 k~~v~e~e~ 283 (678)
...|..+..
T Consensus 246 ~~~I~~l~~ 254 (428)
T PRK11637 246 RDSIARAER 254 (428)
T ss_pred HHHHHHHHH
Confidence 666666543
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=94.72 E-value=10 Score=43.50 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 005767 530 DIAAAEEEISRWKAA 544 (678)
Q Consensus 530 dIkaaEeEi~RWKeA 544 (678)
++..++.++.+|+..
T Consensus 586 ~~~~~~~~~~~l~~~ 600 (880)
T PRK03918 586 SVEELEERLKELEPF 600 (880)
T ss_pred hHHHHHHHHHHhhhh
Confidence 344667777777654
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.55 E-value=4.5 Score=40.56 Aligned_cols=163 Identities=25% Similarity=0.281 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005767 461 AGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR 540 (678)
Q Consensus 461 AsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~R 540 (678)
+...+.-+.+++..|..|...|+..-.-......-++.=.+...+.....+.||.|..-..+.++.|-..++.|..-+.
T Consensus 31 ~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~e- 109 (237)
T PF00261_consen 31 AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAE- 109 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4455666666666666666666666555555565666666677777777777777777777777777666666553221
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 005767 541 WKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVE 620 (678)
Q Consensus 541 WKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA~LReRIE 620 (678)
.+.+. ..|....+..+...|+++..-+..+++|++-=|+--...-.---.-+.+-.-+..|-..+..+|.
T Consensus 110 ---------e~e~k-~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~ 179 (237)
T PF00261_consen 110 ---------EAERK-YEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIR 179 (237)
T ss_dssp ---------HHHHH-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 12222 34555666777777777777777777776544433333333333444444455666677888888
Q ss_pred HHHHhHhhhhhhcc
Q 005767 621 ELSHQLEEFESRED 634 (678)
Q Consensus 621 ELtRQLEE~Esre~ 634 (678)
.|+.+|.+++.|.+
T Consensus 180 ~L~~~lkeaE~Rae 193 (237)
T PF00261_consen 180 DLEEKLKEAENRAE 193 (237)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887765
No 29
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.34 E-value=6.2 Score=39.38 Aligned_cols=162 Identities=26% Similarity=0.352 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhHHHHH
Q 005767 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRM--------------KRIEELEEKERIANESVEGLML 529 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~--------------~~IkeLEErErv~~enVEeL~~ 529 (678)
=-.-++.++++|.+|++-+++++-|--.|+.+---|.+.|..+. --|.-|-++-|-.-...-.+-.
T Consensus 10 r~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~ 89 (194)
T PF15619_consen 10 RLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELER 89 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456799999999999999999999999999999998886552 3355555666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHH--H-HHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHh-
Q 005767 530 DIAAAEEEISRWKAAAEQ--E-AAAGR-AVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKS- 604 (678)
Q Consensus 530 dIkaaEeEi~RWKeAcEl--E-aeAGk-aveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkS- 604 (678)
.|+.++.|+.+-+..+.- - ++.+. .-.+++..+|+.+...+......+...+.++.+-.... ..+-+++..
T Consensus 90 klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~----~rql~~e~kK 165 (194)
T PF15619_consen 90 KLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF----RRQLASEKKK 165 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHH
Confidence 777777777776655542 1 22221 22467777788888888888877777777776544433 333333321
Q ss_pred hhhhhhhhHHHHHHHHHHHHhHhhh
Q 005767 605 LRLADTRASRLRDRVEELSHQLEEF 629 (678)
Q Consensus 605 LkLAD~RaA~LReRIEELtRQLEE~ 629 (678)
..=|=.--..|...|+.|+.+|.|-
T Consensus 166 ~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 166 HKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222344555555555555543
No 30
>PRK09039 hypothetical protein; Validated
Probab=94.19 E-value=5 Score=42.74 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------HHHHHHHHHHHH
Q 005767 472 QLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIA-------AAEEEISRWKAA 544 (678)
Q Consensus 472 qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIk-------aaEeEi~RWKeA 544 (678)
..+|+.+...|.++.+++..|=.++.---.........|.+|..+...+..+-+.|..-++ +++.-+..
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~---- 120 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGE---- 120 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHH----
Confidence 4455555555555555555555555444445555555556665555554444444333222 11111111
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005767 545 AEQEAAAGRAVEQEFVAQLSSLKQELEEAKQA 576 (678)
Q Consensus 545 cElEaeAGkaveqE~~~qls~LkqELe~~K~a 576 (678)
...+...=+....|-..+|..|++++..+|..
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 12344444555566666677777777777666
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.32 E-value=35 Score=42.07 Aligned_cols=77 Identities=23% Similarity=0.337 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 005767 462 GALENIVKASQLEIVELRHSVEELRAES-SLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEI 538 (678)
Q Consensus 462 salE~~mK~~qlEI~eLr~sleEsRsE~-~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi 538 (678)
.-.+|-|+..+-++-.|+..+.....+. ..+....++-+.++..+...|+.||+...=|.+..++++.+++.-++|.
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3456777777777777777777777777 6777777777777888888888887766666666677777776666553
No 32
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.82 E-value=51 Score=42.82 Aligned_cols=322 Identities=20% Similarity=0.261 Sum_probs=175.3
Q ss_pred HHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhc
Q 005767 213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHR 292 (678)
Q Consensus 213 ~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r 292 (678)
..-.||++.+. |+-++.-.++...++|-.++.++..=-..+.---..++++.++..++.+.|..++.-+..+..++
T Consensus 395 ~~qqqle~~~l----ele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~ 470 (1822)
T KOG4674|consen 395 KLQQQLESLKL----ELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQL 470 (1822)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666654 34566666666666766666666654444444455566666666666666666666665555333
Q ss_pred hhhHHhhhhHHHHHHHH-------HHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHH---HHHHH
Q 005767 293 PLLVDQLNYVSKIHDQV-------DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTR---IVVEK 362 (678)
Q Consensus 293 ~lL~dql~~v~~ihd~L-------~~vi~~vd~~~~~~~~lsEs~f~~~etd~ee~l~asl~~~~sI~eLa~---ev~~K 362 (678)
.-+.-++......+.-| ..=++++..+... . -++.-.-++++.+.-|-.-|..+++|-+|.- +....
T Consensus 471 ~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~--~-~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~ 547 (1822)
T KOG4674|consen 471 NDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKI--T-VSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNA 547 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--c-cCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33333333332222211 1112223222221 1 1111144677778888888889998887642 22222
Q ss_pred hHHHHH---h------------hHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhcc
Q 005767 363 TRDLVQ---K------------KSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGI 427 (678)
Q Consensus 363 ~~~~~E---~------------k~ke~k~Le~~V~~L~kEn~dI~sLLR~AL~EKea~d~~qk~s~llQiAE~GLq~vGf 427 (678)
|+.+-+ . -+-.+..+...|..|.++..+.+..+.+-+.+|.-.-
T Consensus 548 vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~--------------------- 606 (1822)
T KOG4674|consen 548 VRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYK--------------------- 606 (1822)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 322222 2 2223446778899999999999999999999776510
Q ss_pred ccccccccCCCCCCCCccccCCCcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005767 428 DFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRM 507 (678)
Q Consensus 428 gF~~~~~~g~g~~~~S~d~~~~~~~ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~ 507 (678)
.+-.-+.+.. .+..+++.....+. ..+.+..++.+ -.+|..-..++|.-...|+.....=-+++...+
T Consensus 607 --e~l~~~e~~~--~~k~nss~~~~t~~-----~~~~e~~l~qL---e~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir 674 (1822)
T KOG4674|consen 607 --ELLAELEDSH--QLKPNSSALDQTEA-----PRAKEKRLRQL---ENELESYKKEKRENLKKLQEDFDSLQKEVTAIR 674 (1822)
T ss_pred --Hhhhcccccc--cCCCCchhhccccc-----chhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111110 11111111111111 11123333322 233344555555555555555555555666666
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005767 508 KRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLG 585 (678)
Q Consensus 508 ~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLK 585 (678)
.....+...-+|+-+-.+.|+..|-....|+.--+ .--+.|...|..-++.+..+.+.|..+|.|++
T Consensus 675 ~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~-----------er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~ 741 (1822)
T KOG4674|consen 675 SQLEKLKNELNLAKEKLENLEKNLELTKEEVETLE-----------ERNKNLQSTISKQEQTVHTLSQELLSANEKLE 741 (1822)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 66667777777777777777777777666664322 23456666677777777777777777777764
No 33
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.14 E-value=30 Score=38.87 Aligned_cols=121 Identities=29% Similarity=0.351 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh----------
Q 005767 459 NLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH-------RMKRIEELEEKERIAN---------- 521 (678)
Q Consensus 459 sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~-------~~~~IkeLEErErv~~---------- 521 (678)
+-+..........+.|+..++..++..++.+.-+...+..--+++.. -...|+-|.+.+.-..
T Consensus 379 ~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~V 458 (522)
T PF05701_consen 379 SEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKV 458 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCe
Confidence 33444445555666666667777777666666665555544444432 2356777776653222
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005767 522 ----ESVEGLMLDIAAAEEEISRWKAA-AEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSES 580 (678)
Q Consensus 522 ----enVEeL~~dIkaaEeEi~RWKeA-cElEaeAGkaveqE~~~qls~LkqELe~~K~aLees 580 (678)
+.-+.|..-...+| |++.||++ +-..|++-++-+.+.-..+.....+++..|++|.++
T Consensus 459 tls~eEy~~L~~ka~e~e-e~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~A 521 (522)
T PF05701_consen 459 TLSLEEYESLSKKAEEAE-ELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEA 521 (522)
T ss_pred eecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22455666666664 56777765 567899999999999999999999999999999875
No 34
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.06 E-value=3.2 Score=44.28 Aligned_cols=134 Identities=19% Similarity=0.296 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHH-----
Q 005767 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIA----- 103 (678)
Q Consensus 29 ~~~~~~l~ael~~er~~r~aae~s~~e~~~~~~rlkala~ea~~krde~~r~rd~a~r~ke~~~~~~~~~s~el~----- 103 (678)
.++|.+|..-||+=.+-|.--.+-+..+++.|..=|.=.-+.-..=--++|+..--+-.-+..-+.++||+.+|.
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~q 96 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQ 96 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHH
Confidence 567888888888777766666677777777777666544444333333444444444444555577778888776
Q ss_pred ------HHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCc
Q 005767 104 ------EVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177 (678)
Q Consensus 104 ------~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~Sq 177 (678)
+++..|..+.+- .-.+--+++|++.|-.-..+|--.++---.|-|+| +.|++.+|
T Consensus 97 v~~lEgQl~s~Kkqie~L------------------eqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f-~~p~tp~q 157 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKL------------------EQELKRCKSELERSQQAASSGDVSLNPCSTPQKSF-ATPLTPSQ 157 (307)
T ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhccCCccccccCCchhhc-cCCCChhh
Confidence 333333322222 22233389999988887777777777777788899 77888887
Q ss_pred cccC
Q 005767 178 KYTG 181 (678)
Q Consensus 178 KYtG 181 (678)
.|+|
T Consensus 158 ~~~~ 161 (307)
T PF10481_consen 158 YYSD 161 (307)
T ss_pred hhhh
Confidence 7765
No 35
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.81 E-value=28 Score=37.92 Aligned_cols=38 Identities=5% Similarity=0.018 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 510 IEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQ 547 (678)
Q Consensus 510 IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcEl 547 (678)
..+++++=.-+.+...++-.++...+.+..+|...-++
T Consensus 374 ~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~ 411 (562)
T PHA02562 374 FVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDL 411 (562)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556777777777778888887664443
No 36
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.42 E-value=24 Score=36.46 Aligned_cols=79 Identities=22% Similarity=0.247 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005767 502 ELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQ------EAAAGRAVEQEFVAQLSSLKQELEEAKQ 575 (678)
Q Consensus 502 eIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcEl------EaeAGkaveqE~~~qls~LkqELe~~K~ 575 (678)
++..+...|..++..-.-+...++.+-..++.++..+.|.+...+. +...-+....+....+..++.++..+++
T Consensus 145 ~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 224 (423)
T TIGR01843 145 QLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKR 224 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445555555555555556666777777777777888887666543 2222233333333334444444444444
Q ss_pred HHHHh
Q 005767 576 ALSES 580 (678)
Q Consensus 576 aLees 580 (678)
.+..+
T Consensus 225 ~l~~~ 229 (423)
T TIGR01843 225 QIDEL 229 (423)
T ss_pred HHHHH
Confidence 44333
No 37
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.16 E-value=0.087 Score=61.59 Aligned_cols=358 Identities=23% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHH
Q 005767 186 VYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVA 265 (678)
Q Consensus 186 aygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ 265 (678)
....-|+-++.|.+|=.|||...|.+.. ||..-+.|..++..-++.++.+.+.-..-+..+-
T Consensus 122 ~~~lrkkh~~~~~eL~eqle~lqk~k~~------------------lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K 183 (859)
T PF01576_consen 122 LAELRKKHQDAVAELNEQLEQLQKQKAK------------------LEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRK 183 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 3345578889999999999998887643 4444444555555556666666666666666666
Q ss_pred HHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCccchhHHHHHHH
Q 005767 266 EIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRAS 345 (678)
Q Consensus 266 ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~~~~~~~lsEs~f~~~etd~ee~l~as 345 (678)
.++.++.+|+-++++.+..+..+..+..-|-..++-+..-.+....-+..+.-.+. .+..-
T Consensus 184 ~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~-------------------~L~~q 244 (859)
T PF01576_consen 184 QLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKS-------------------SLESQ 244 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHH
Confidence 66666677777777777666666555444443333222222222221111111000 01101
Q ss_pred HhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhh
Q 005767 346 LAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREA 425 (678)
Q Consensus 346 l~~~~sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kEn~dI~sLLR~AL~EKea~d~~qk~s~llQiAE~GLq~v 425 (678)
|..++ .-.+...+.+..|...+..|..+...+..-| -+- ...++.+ ++-|.++
T Consensus 245 Leelk--------------~~leeEtr~k~~L~~~l~~le~e~~~L~eql----eeE-----~e~k~~l----~~qlsk~ 297 (859)
T PF01576_consen 245 LEELK--------------RQLEEETRAKQALEKQLRQLEHELEQLREQL----EEE-----EEAKSEL----ERQLSKL 297 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhH--------------HHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH----hhh-----hhhHHHH----HHHHHHH
Confidence 11111 1122223333455555555555444332222 100 0011110 0011111
Q ss_pred ccccccccccCCCCCCCCccccCCCcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005767 426 GIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH 505 (678)
Q Consensus 426 GfgF~~~~~~g~g~~~~S~d~~~~~~~ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~ 505 (678)
--.+. ..-..-+.++......++..=|.+...+.+++..+++.++-+..|..--..-..++..
T Consensus 298 ~~El~-----------------~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleD 360 (859)
T PF01576_consen 298 NAELE-----------------QWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELED 360 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHH-----------------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10110 0112344556666667888888999999999999999998888887655555555555
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005767 506 RMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEA---AAGRAVEQEFVAQLSSLKQELEEAKQALSESEK 582 (678)
Q Consensus 506 ~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEa---eAGkaveqE~~~qls~LkqELe~~K~aLeesn~ 582 (678)
.+..+... +..+-.|-...+..+..++-|+..|+... .+-..-...+.+.+..|+.+++++...++.+..
T Consensus 361 l~~eLe~~-------~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~ler 433 (859)
T PF01576_consen 361 LTSELEKA-------QAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELER 433 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44433322 23345566677788888899988876443 333333456677789999999999888887766
Q ss_pred hhc-chHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhHhhhhhh
Q 005767 583 KLG-FKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEFESR 632 (678)
Q Consensus 583 KLK-lKEElAaAAMAAr~AAEkSLkLAD~RaA~LReRIEELtRQLEE~Esr 632 (678)
..+ |..|+.- ....-+-+.+++.=-+..-..|-..++||..+|+|++..
T Consensus 434 e~k~L~~El~d-l~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~ 483 (859)
T PF01576_consen 434 ENKQLQDELED-LTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDA 483 (859)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHhhcc-chhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 4455543 222333444444333334445555566666666665543
No 38
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=89.68 E-value=34 Score=37.08 Aligned_cols=185 Identities=21% Similarity=0.282 Sum_probs=100.1
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCC---CCCCCCCC--
Q 005767 98 LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSN---FKNFSAGG-- 172 (678)
Q Consensus 98 ~s~el~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~---~k~f~~~~-- 172 (678)
|-.|+.-+...++-+.+.++.+.. ||-.--.++..|...+.. ++-.-+|+.....+.| .-+|.|++
T Consensus 121 L~kE~~li~~~~~lL~~~l~~~~e-------Ql~~lr~ar~~Le~Dl~d--K~~A~~ID~~~~~L~~~S~~i~~~~~~~r 191 (384)
T PF03148_consen 121 LLKEVELIENIKRLLQRTLEQAEE-------QLRLLRAARYRLEKDLSD--KFEALEIDTQCLSLNNNSTNISYKPGSTR 191 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCccCCCcccCCccc
Confidence 444555566666666666666555 332222333334433332 2233344444433332 22233322
Q ss_pred -CCCCccccCchhHHHHhhhchhHHHHHH---Hhhhhhh-hhhhhHHHHH-------hhhhcceeeeeehhhHHHhhhch
Q 005767 173 -LPRSQKYTGLPAVVYGVIKRTNEIVEEL---VGQIDAT-AKSRNDVREQ-------MEQRNFEIAIEVSELEATISGLR 240 (678)
Q Consensus 173 -lP~SqKYtGl~avaygv~KR~neiveel---~~Q~da~-~k~rn~aReq-------meqrny~iAIEVSqLEa~is~lr 240 (678)
-|.+..|.-....++..|.++..-+..- -..|+.+ ...+++.+.| +.+|=|+.--=-.+||-......
T Consensus 192 ~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~ 271 (384)
T PF03148_consen 192 IPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTL 271 (384)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2444455556666677776665433221 1112211 1223333333 33444444444567888888888
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHH------------------------hHHHHHHHHHHHHHHhhchhhh
Q 005767 241 EEVAKKSSFIENLEKSLIEKDEKVAEIES------------------------QGLELRQLVNEYEDKLKNLESH 291 (678)
Q Consensus 241 ~eva~k~s~~e~l~k~~~eke~ki~ele~------------------------E~~~Lk~~v~e~e~kl~~~e~~ 291 (678)
+|++.-...++.|++++.+|++-+.-.+. ||..|++.+..|..+|...+..
T Consensus 272 ~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~ 346 (384)
T PF03148_consen 272 QEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEAS 346 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888765443222 7777888887777777666633
No 39
>PF13514 AAA_27: AAA domain
Probab=89.11 E-value=62 Score=39.35 Aligned_cols=109 Identities=24% Similarity=0.342 Sum_probs=51.4
Q ss_pred CCCCCCCccccCchhHHHHhhhchhHHHHH------HHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHh---hhch
Q 005767 170 AGGLPRSQKYTGLPAVVYGVIKRTNEIVEE------LVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI---SGLR 240 (678)
Q Consensus 170 ~~~lP~SqKYtGl~avaygv~KR~neivee------l~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~i---s~lr 240 (678)
+.|+|.+ |+-.-+.+.+-..+.+. .-..++.....+..++..+...=..... ...|...+ ..++
T Consensus 593 ~~g~p~~------p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~-~~~l~~~l~~a~~~~ 665 (1111)
T PF13514_consen 593 AAGLPLS------PAEMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGP-AEELAALLEEAEALL 665 (1111)
T ss_pred hcCCCCC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHH
Confidence 5567754 55555666655554432 2233444445555555555544333333 22232222 2233
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005767 241 EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (678)
Q Consensus 241 ~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (678)
++........+.++..+..-+..+...+.+...+.+.+.......
T Consensus 666 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 710 (1111)
T PF13514_consen 666 EEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEW 710 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555555555555555555444443
No 40
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.78 E-value=26 Score=36.92 Aligned_cols=92 Identities=24% Similarity=0.294 Sum_probs=76.7
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 005767 455 DEIYNLAGALENIVKASQLEIVELRHSVEEL----RAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLD 530 (678)
Q Consensus 455 ~Ev~sLAsalE~~mK~~qlEI~eLr~sleEs----RsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~d 530 (678)
.-+..+.-.+...-..+..++..|+....+. ..+...|+.-+..+..+|......+.+|+.+=.=+...|+.+...
T Consensus 173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 173 EQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777778888888889999999888865 677888889999999999999999999998888888889999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 005767 531 IAAAEEEISRWKAAAE 546 (678)
Q Consensus 531 IkaaEeEi~RWKeAcE 546 (678)
+.+...+|..+..-++
T Consensus 253 k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 253 KQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887665554
No 41
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.13 E-value=28 Score=33.15 Aligned_cols=101 Identities=25% Similarity=0.373 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005767 474 EIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGR 553 (678)
Q Consensus 474 EI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGk 553 (678)
++.++++.+..+..+.+.++........++.........+.+--+-..+++..+-..++...+|+..-.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~----------- 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ----------- 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 444444444444444444444444444444333333333333333333333333334444444433333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005767 554 AVEQEFVAQLSSLKQELEEAKQALSESEKKLG 585 (678)
Q Consensus 554 aveqE~~~qls~LkqELe~~K~aLeesn~KLK 585 (678)
...++....+..+.+++.+..+.+.....+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 151 KELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444445555555555554444444443
No 42
>PRK11637 AmiB activator; Provisional
Probab=87.13 E-value=48 Score=35.84 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=27.9
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 005767 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN 287 (678)
Q Consensus 231 qLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~ 287 (678)
+++..|..++.++..-...+..+.+++.....+|..++.++..+...+..++..|..
T Consensus 58 ~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 58 AKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555555555555555555555555444433
No 43
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.06 E-value=96 Score=39.19 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=40.6
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhh
Q 005767 253 LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV 316 (678)
Q Consensus 253 l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~v 316 (678)
+..+.++.+.++++.+.+-..|...+..++..|+++...+.-+.+-+..|.+....|..-..-.
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~ 555 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDM 555 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence 3455566666666666666666666777777776666666666666666666666666444333
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=75 Score=37.85 Aligned_cols=146 Identities=26% Similarity=0.333 Sum_probs=89.8
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 454 EDEIYNLAGALENIVKASQLEIVELRHSVEEL---------------------RAESSLLKEHLEAQAKELSHRMKRIEE 512 (678)
Q Consensus 454 e~Ev~sLAsalE~~mK~~qlEI~eLr~sleEs---------------------RsE~~~Lq~l~e~QaKeIa~~~~~Ike 512 (678)
.+|+.+..+|.++ +|-.|..|=.++.+. |.+-+-|-...-.=.........+|..
T Consensus 453 l~e~~t~gsA~ed----~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~ 528 (698)
T KOG0978|consen 453 LSEMETIGSAFED----MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGK 528 (698)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776 444444444444433 333333333332223333456678999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chHHHH
Q 005767 513 LEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLG-FKEETA 591 (678)
Q Consensus 513 LEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLK-lKEElA 591 (678)
||++++.+-.|+-++-.+++--.. .+....+-..-+.+.++.++..++.+++||. +.+.++
T Consensus 529 leeq~~~lt~~~~~l~~el~~~~~------------------~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~ 590 (698)
T KOG0978|consen 529 LEEQERGLTSNESKLIKELTTLTQ------------------SLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA 590 (698)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888776653221 2334444456667777777888888888774 444443
Q ss_pred HHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHHhHhhhhh
Q 005767 592 AAAMTARDAAEKSLRLADTR--ASRLRDRVEELSHQLEEFES 631 (678)
Q Consensus 592 aAAMAAr~AAEkSLkLAD~R--aA~LReRIEELtRQLEE~Es 631 (678)
+.++.|-+.+ ..+|.+-++.|++.|+..-+
T Consensus 591 ----------e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 591 ----------ELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555 35888888999998886544
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.52 E-value=40 Score=34.30 Aligned_cols=263 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHH
Q 005767 33 REVLAELNRERQA-REAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDE 111 (678)
Q Consensus 33 ~~l~ael~~er~~-r~aae~s~~e~~~~~~rlkala~ea~~krde~~r~rd~a~r~ke~~~~~~~~~s~el~~v~~~~de 111 (678)
..|..+++.=+.. .........-.+.....|+....++.+.+....-+++-...+-+..-..-+........+...-..
T Consensus 28 ~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~ 107 (312)
T PF00038_consen 28 KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELES 107 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHHHHhhh
Q 005767 112 VVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIK 191 (678)
Q Consensus 112 ~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~K 191 (678)
+.+.+|+...+|.+ .-.-..+|+.||.-....--..+.-+.+.+.........+.|.+.
T Consensus 108 lrk~ld~~~~~r~~-------le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~d-------------- 166 (312)
T PF00038_consen 108 LRKDLDEETLARVD-------LENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSD-------------- 166 (312)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTSTT------------------------------
T ss_pred hhhhhhhhhhhHhH-------HHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeeccccccc--------------
Q ss_pred chhHHHHHHHhhhh-hhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 005767 192 RTNEIVEELVGQID-ATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQ 270 (678)
Q Consensus 192 R~neiveel~~Q~d-a~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E 270 (678)
-..++.++=.|.+ .+.+.|.++......+--++--.+..-...+..+|+|+..-...+.+|...+..-..+...|++.
T Consensus 167 -L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~ 245 (312)
T PF00038_consen 167 -LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQ 245 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhh
Q ss_pred HHHHHHHHHH----HHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 005767 271 GLELRQLVNE----YEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (678)
Q Consensus 271 ~~~Lk~~v~e----~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd 317 (678)
+..+....+. |...+..++..-.-|...|.-...=|..|.++=..+|
T Consensus 246 l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld 296 (312)
T PF00038_consen 246 LRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALD 296 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
No 46
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.07 E-value=42 Score=39.64 Aligned_cols=164 Identities=22% Similarity=0.318 Sum_probs=105.9
Q ss_pred hHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 005767 455 DEIYNLAGALENIVKASQLE-IVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAA 533 (678)
Q Consensus 455 ~Ev~sLAsalE~~mK~~qlE-I~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIka 533 (678)
+|.+.+ +-...+.+|-+ |..+...-++.-.-...|+...+.|-++|.+.+..++.|.++---+++..|+...--+.
T Consensus 535 ~E~l~l---L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~ 611 (717)
T PF10168_consen 535 QECLEL---LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEK 611 (717)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444 66777888877 55565556666777788999999999999999999999988887777776655433222
Q ss_pred HHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH-HHHHhhhhh
Q 005767 534 AEEEISRWKAAAEQEAAA----GRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARD-AAEKSLRLA 608 (678)
Q Consensus 534 aEeEi~RWKeAcElEaeA----GkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~-AAEkSLkLA 608 (678)
...=+.+= =.-+.+ --.++.+|.++|-.++..|..+++.+...+.|+..-+- -++-++ .-.+|.-|.
T Consensus 612 L~~R~~~v----l~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~----~i~~~~~~~~~s~~L~ 683 (717)
T PF10168_consen 612 LMKRVDRV----LQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR----QIESQKSPKKKSIVLS 683 (717)
T ss_pred HHHHHHHH----HHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccccccCCCccCC
Confidence 22211111 112222 22457888888889999999999999888887754321 112222 123556666
Q ss_pred hhhhHHHHHHHHHHHHhHhhh
Q 005767 609 DTRASRLRDRVEELSHQLEEF 629 (678)
Q Consensus 609 D~RaA~LReRIEELtRQLEE~ 629 (678)
+.=...+++=+-+.+.+|.+.
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~ 704 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDEL 704 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555543
No 47
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=86.07 E-value=97 Score=38.28 Aligned_cols=160 Identities=22% Similarity=0.305 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhh--------------hhhhhhhcccCCCCCCCCCCCC
Q 005767 109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV--------------TGIEKISGKVSNFKNFSAGGLP 174 (678)
Q Consensus 109 ~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~--------------sg~ekis~k~s~~k~f~~~~lP 174 (678)
...+..+....-++|+-...+|....+.+..++..+...-++|. .|-+..=|||-+-.=+..-+|-
T Consensus 492 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~ 571 (1201)
T PF12128_consen 492 VEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLE 571 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCC
Confidence 33444455555555665556666666677777777777777763 4556666888765433333332
Q ss_pred CCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHH
Q 005767 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLE 254 (678)
Q Consensus 175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~ 254 (678)
..---.+-+.-.|||-=-++-| ++..-..++ + +|++.+..+...+..-....+.++
T Consensus 572 P~l~~~~~~dslyGl~LdL~~I--------~~pd~~~~e--e--------------~L~~~l~~~~~~l~~~~~~~~~~e 627 (1201)
T PF12128_consen 572 PQLVEDSGSDSLYGLSLDLSAI--------DVPDYAASE--E--------------ELRERLEQAEDQLQSAEERQEELE 627 (1201)
T ss_pred CeecCCCcccccceeEeehhhc--------CCchhhcCh--H--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111123567775333332 222111111 1 222223333333344444456677
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhc
Q 005767 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHR 292 (678)
Q Consensus 255 k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r 292 (678)
+.+.....++..+.+++..++..+...+..+..+..++
T Consensus 628 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 665 (1201)
T PF12128_consen 628 KQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNER 665 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777666666666666666666665555433
No 48
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.84 E-value=6.4 Score=36.42 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=39.7
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHH
Q 005767 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS 303 (678)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~ 303 (678)
++.|....+.++.++..-.+..+.....+...+....+ +=..|.+-+.+++.++..|..|+.+|.+||..++
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~---qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ls 132 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEE---QKEQLEKELSELEQRIEDLNEQNKLLHDQLESLS 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444444444444444444444444444443333222 2235555566666666666899999999997653
No 49
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.66 E-value=17 Score=34.14 Aligned_cols=71 Identities=31% Similarity=0.333 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHH
Q 005767 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHL---EAQAKELSHRMKRIEELEEKERIAN-------ESVEGLMLDIAA 533 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~---e~QaKeIa~~~~~IkeLEErErv~~-------enVEeL~~dIka 533 (678)
+|.-+-.++.++..|...=+.++.|+-.|-... ....+++......+++|+.|+..+- +-||+|=+||..
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 355566666777777777777788888877666 4556888899999999999998774 458888888765
Q ss_pred H
Q 005767 534 A 534 (678)
Q Consensus 534 a 534 (678)
.
T Consensus 108 l 108 (120)
T PF12325_consen 108 L 108 (120)
T ss_pred H
Confidence 4
No 50
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.48 E-value=23 Score=32.96 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=31.3
Q ss_pred hhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhh
Q 005767 189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAK 245 (678)
Q Consensus 189 v~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~ 245 (678)
-..++=.+|-+||.++|-....|...-.++-.-.|++ ..|...+.+|++.++.
T Consensus 32 ~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~----~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 32 NDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDI----ERLQNDVERLKEQLEE 84 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHH
Confidence 3455667889999999887777666555544443332 3444444444444433
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=85.40 E-value=1.2e+02 Score=38.83 Aligned_cols=160 Identities=15% Similarity=0.193 Sum_probs=89.1
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHH--HHHHHH---HHHHHhhhhh
Q 005767 453 EEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH---RMK--RIEELE---EKERIANESV 524 (678)
Q Consensus 453 ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~---~~~--~IkeLE---ErErv~~enV 524 (678)
..+++.+.-.-.+..|.....++.++++.+..+......++.....=....++ ... .-.++. ...++++.++
T Consensus 436 SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~ 515 (1486)
T PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQL 515 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 44567777777788888888888888888888888776666544332221111 000 001111 2345666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHh
Q 005767 525 EGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKS 604 (678)
Q Consensus 525 EeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkS 604 (678)
..+-+..+++|.-+.-=+.|-.+=.++++....-+.. ...| +.+.+-.=|..+.++..
T Consensus 516 ~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~ 573 (1486)
T PRK04863 516 QQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-EDEL---------------------EQLQEELEARLESLSES 573 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-HHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 6666666666654433333322222222210000000 0111 12223333344444555
Q ss_pred hhhhhhhhHHHHHHHHHHHHhHhhhhhhcc
Q 005767 605 LRLADTRASRLRDRVEELSHQLEEFESRED 634 (678)
Q Consensus 605 LkLAD~RaA~LReRIEELtRQLEE~Esre~ 634 (678)
+.=++.|..++|.++++|..++.+.+....
T Consensus 574 ~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap 603 (1486)
T PRK04863 574 VSEARERRMALRQQLEQLQARIQRLAARAP 603 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 556778889999999999999999998873
No 52
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.36 E-value=82 Score=36.80 Aligned_cols=122 Identities=18% Similarity=0.276 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHhhhhhH
Q 005767 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKE------------------RIANESVE 525 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErE------------------rv~~enVE 525 (678)
+..-++.|+.++..|...+...-.+-..|-.+...|...|.+....+..++++. |.+++|.
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~- 163 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR- 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH-
Confidence 455566778888888887777766777887788888888888887777776653 3334453
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 005767 526 GLMLDIAAAEE---EISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAA 593 (678)
Q Consensus 526 eL~~dIkaaEe---Ei~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaA 593 (678)
+|--.+++.+. -++-=++-.+.=.-+-..+-.|+.+.+..|...|..+| .+|++|..=+..
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~-------e~le~K~qE~~~ 227 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK-------EKLELKSQEAQS 227 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHH
Confidence 34444444444 33333322222233334444555555555555555544 577788664433
No 53
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.11 E-value=74 Score=36.07 Aligned_cols=153 Identities=22% Similarity=0.315 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005767 461 AGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR 540 (678)
Q Consensus 461 AsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~R 540 (678)
...+++-++.+...+.++...+.+.....+.++...+ +...++++++....=+.+.+.+|-.+...|..-+.+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le-------el~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~ 422 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE-------EILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER 422 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555566555555555554443 444455556666666667789999999999999999
Q ss_pred HHHHHHHHHH----h--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005767 541 WKAAAEQEAA----A--GRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASR 614 (678)
Q Consensus 541 WKeAcElEae----A--GkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA~ 614 (678)
|+..... +. . =-.+-+.+-..+..+..++..++..|.. |.+-+ +|.++-+.-|..|-..
T Consensus 423 ~~~~L~~-ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~--g~VNm------------~ai~~e~~e~~~~~~~ 487 (569)
T PRK04778 423 YRNKLHE-IKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE--KPINM------------EAVNRLLEEATEDVET 487 (569)
T ss_pred HHHHHHH-HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc--CCCCH------------HHHHHHHHHHHHHHHH
Confidence 9987652 11 0 0113456667778888888888887776 66654 3445566667777777
Q ss_pred HHHHHHHHHHhHhhhhhhccc
Q 005767 615 LRDRVEELSHQLEEFESREDS 635 (678)
Q Consensus 615 LReRIEELtRQLEE~Esre~~ 635 (678)
|......|.....-.+.--..
T Consensus 488 L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 488 LEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666655433
No 54
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=84.34 E-value=41 Score=32.51 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005767 473 LEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 473 lEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeA 544 (678)
.+...+...|...|....+|+.--..+..++......|++++.+..-+....+.+...++ .|+.||..-
T Consensus 135 ~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k---~E~~rf~~~ 203 (236)
T PF09325_consen 135 IEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIK---KELERFEKE 203 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 444455556666666666666555566788999999999999999999999999987655 799999764
No 55
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=84.12 E-value=45 Score=38.24 Aligned_cols=120 Identities=21% Similarity=0.319 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 005767 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH-----RMKRIEELEEKERIANESVEGLMLDIAAAEEE 537 (678)
Q Consensus 463 alE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~-----~~~~IkeLEErErv~~enVEeL~~dIkaaEeE 537 (678)
-++++++|+|.=...-+..|.|||.|-+-||.-. |+|-. ..+|+-++++|-+++.+-+| +=.-+-.-|+|
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlel----kK~k~nyv~LQEry~~eiQqKnksvsqclE-mdk~LskKeee 461 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLEL----KKIKANYVHLQERYMTEIQQKNKSVSQCLE-MDKTLSKKEEE 461 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHhhhHHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhhhHHH
Confidence 3789999999999999999999999999888644 44433 36789999999999999875 22334566889
Q ss_pred HHHHHHHH-HHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 005767 538 ISRWKAAA-EQEAAAGRA------VEQEFVAQLSSLKQELEEAKQALSESEKKLGFK 587 (678)
Q Consensus 538 i~RWKeAc-ElEaeAGka------veqE~~~qls~LkqELe~~K~aLeesn~KLKlK 587 (678)
|.|-..-= ++|-+.--+ .-+=+.+++-+|..|+.+-+..-.+=.-|||++
T Consensus 462 verLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~ 518 (527)
T PF15066_consen 462 VERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSR 518 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 98876544 555332111 112234446888888887766655555666655
No 56
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.89 E-value=1.3e+02 Score=37.90 Aligned_cols=163 Identities=20% Similarity=0.267 Sum_probs=0.0
Q ss_pred CcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 005767 450 METEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESS----LLKEHLEAQAKELSHRMKRIEELEEKERIANESVE 525 (678)
Q Consensus 450 ~~~ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~----~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVE 525 (678)
....+.+|-.|+..+++ |..++.++.+|+..++.+..=.. ..+.....++.++-.....+.++...-.-+...++
T Consensus 215 ~~l~~~~i~~l~e~~~~-~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1353)
T TIGR02680 215 PPLDDDELTDVADALEQ-LDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELE 293 (1353)
T ss_pred CCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 005767 526 GLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAK--QALSESEKKLGFKEETAAAAMTARDAAEK 603 (678)
Q Consensus 526 eL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K--~aLeesn~KLKlKEElAaAAMAAr~AAEk 603 (678)
....++..++++ ...+..++..|+.+++.++ .++......-.++..+...+-.|..+++.
T Consensus 294 ~~~~~~~~~~~~------------------~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~ 355 (1353)
T TIGR02680 294 TAREEERELDAR------------------TEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQA 355 (1353)
T ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhHhhhhhh
Q 005767 604 SLRLADTRASRLRDRVEELSHQLEEFESR 632 (678)
Q Consensus 604 SLkLAD~RaA~LReRIEELtRQLEE~Esr 632 (678)
++-+-.+..+++.+++++...+.+.+..
T Consensus 356 -~~~a~~~~e~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 356 -IREAESRLEEERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.89 E-value=1e+02 Score=36.59 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 476 VELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (678)
Q Consensus 476 ~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLE 514 (678)
.||=..|.++|-+.+.++...-.|.+||.++...|.+|-
T Consensus 618 ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 618 LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999999999999999999999999988764
No 58
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=82.45 E-value=60 Score=32.97 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=28.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005767 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESS 490 (678)
Q Consensus 456 Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~ 490 (678)
+-.+|+..|.+.+.....++.+|+-.|.++..-+.
T Consensus 175 ~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ 209 (264)
T PF06008_consen 175 ENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTR 209 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999998865443
No 59
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.75 E-value=1.6e+02 Score=37.35 Aligned_cols=66 Identities=23% Similarity=0.275 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005767 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLM 528 (678)
Q Consensus 463 alE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~ 528 (678)
.++..||++...|..|...+++.|.+.+-+.+..+.=.-+|.+.+..|..|++.+-..+...++.+
T Consensus 402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~ 467 (1293)
T KOG0996|consen 402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL 467 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999988776666554443
No 60
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=80.62 E-value=1.2 Score=50.94 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHH
Q 005767 371 SREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFK 416 (678)
Q Consensus 371 ~ke~k~Le~~V~~L~kEn~dI~sLLR~AL~EKea~d~~qk~s~llQ 416 (678)
-.+++.|+..+..|..|+.+....-.+...=++....=+.+...+.
T Consensus 256 l~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E 301 (722)
T PF05557_consen 256 LAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLE 301 (722)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888877776655555443334433333
No 61
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.02 E-value=1.3e+02 Score=35.14 Aligned_cols=104 Identities=18% Similarity=0.309 Sum_probs=53.0
Q ss_pred ccCCCcchhhHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 005767 446 KANAMETEEDEIYNLAGALENIVK---ASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEE-------LEE 515 (678)
Q Consensus 446 ~~~~~~~ee~Ev~sLAsalE~~mK---~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~Ike-------LEE 515 (678)
+++....-+.|+.++...|+.+-+ .++.+|..|++.+.++|.-+....+....=-.++-.+..+|-+ +--
T Consensus 83 ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~kr 162 (546)
T KOG0977|consen 83 TSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKR 162 (546)
T ss_pred CcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHH
Confidence 444455567788888888777733 3555666666666665555444433322222222222222222 222
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 516 KERIANESVEGLMLDIAAAEEEISRWKAAAEQEA 549 (678)
Q Consensus 516 rErv~~enVEeL~~dIkaaEeEi~RWKeAcElEa 549 (678)
+-+.+..-+-.|-.++.-...+|.+=|.....|.
T Consensus 163 r~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2223333345555555555666666666666665
No 62
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.71 E-value=16 Score=37.86 Aligned_cols=130 Identities=25% Similarity=0.279 Sum_probs=85.9
Q ss_pred cccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhc
Q 005767 160 GKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL 239 (678)
Q Consensus 160 ~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~l 239 (678)
=|-+-.|+||..||...+|+.....-.--++.-.+..|++|=+|||.. |+-
T Consensus 94 EkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~-------------------------E~E---- 144 (233)
T PF04065_consen 94 EKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQL-------------------------EAE---- 144 (233)
T ss_pred HHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHH----
Confidence 445677999999999998887777666667777777777777776643 222
Q ss_pred hHHHhhhhhhHHHHH------HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHH
Q 005767 240 REEVAKKSSFIENLE------KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDII 313 (678)
Q Consensus 240 r~eva~k~s~~e~l~------k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi 313 (678)
+|+|. +..+.+..++.+++.-+...+--|..||.-|+.|+.-. + .-..|..|.+.|.-.|
T Consensus 145 ----------~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~-l---~~e~V~~ikedieyYv 210 (233)
T PF04065_consen 145 ----------IESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDE-L---DPEQVEDIKEDIEYYV 210 (233)
T ss_pred ----------HHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C---CHHHHHHHHHHHHHHH
Confidence 22222 22446788888888888888888888888888877332 1 1145567888888888
Q ss_pred hhhcCCC-ccccccccccCC
Q 005767 314 KIVDDGN-LDQSGLSESLFL 332 (678)
Q Consensus 314 ~~vd~~~-~~~~~lsEs~f~ 332 (678)
+.=.+.- .+--.||+.+++
T Consensus 211 e~n~d~Df~ede~iYddl~L 230 (233)
T PF04065_consen 211 ESNQDPDFEEDEDIYDDLNL 230 (233)
T ss_pred HcCCCCcccchHhHhhccCC
Confidence 7643322 222345555554
No 63
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=78.41 E-value=51 Score=34.61 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=25.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005767 519 IANESVEGLMLDIAAAEEEISRWKAA-----AEQEAAAGRAVEQEFVAQLSSLKQELEEAK 574 (678)
Q Consensus 519 v~~enVEeL~~dIkaaEeEi~RWKeA-----cElEaeAGkaveqE~~~qls~LkqELe~~K 574 (678)
|+.+-|+.+-..+.+||..+..||.. .+..+.+.-..+.+++.++..++.+|..++
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555555442 123333333444555555555444444443
No 64
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=78.17 E-value=78 Score=31.65 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=61.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHH
Q 005767 457 IYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANE-SVEGLMLDIAAAE 535 (678)
Q Consensus 457 v~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~e-nVEeL~~dIkaaE 535 (678)
++.+...+|+--+-+.+=|-+++..|.+.|..+......--.=.+++.++...|.+++.|=..+.+ .=|+|...--.
T Consensus 15 ~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~-- 92 (219)
T TIGR02977 15 LNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALI-- 92 (219)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--
Confidence 334444444444445555555555555555554444333333346677888888888888777765 44555433221
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005767 536 EEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKK 583 (678)
Q Consensus 536 eEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~K 583 (678)
=|..++..+..=..-+..+..++..|+..|..++.-+..+..|
T Consensus 93 -----~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 93 -----EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333334444444555555555555555555443
No 65
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.11 E-value=1e+02 Score=32.39 Aligned_cols=114 Identities=23% Similarity=0.251 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 005767 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRW 541 (678)
Q Consensus 462 salE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RW 541 (678)
.-....++..+.++..++..+.+..-+.+-|+.....=..+|.+...+|+.++++=.- --=+.++.+...|+.-|
T Consensus 27 ~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~-----v~~~~e~~aL~~E~~~a 101 (239)
T COG1579 27 KEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA-----VKDERELRALNIEIQIA 101 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHH
Confidence 3445667777778888888888777777777776666666677777777777655411 11134456666677666
Q ss_pred HH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005767 542 KA---AAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSES 580 (678)
Q Consensus 542 Ke---AcElEaeAGkaveqE~~~qls~LkqELe~~K~aLees 580 (678)
+. ..+.|+.-=...++++.+++..|+..+..++..+.+.
T Consensus 102 k~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 3444444444445555555555555555555554443
No 66
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=77.01 E-value=22 Score=33.76 Aligned_cols=70 Identities=26% Similarity=0.475 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHH
Q 005767 462 GALENIVKASQLEIVELRHSVEEL--RAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGL---MLDIAAAEE 536 (678)
Q Consensus 462 salE~~mK~~qlEI~eLr~sleEs--RsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL---~~dIkaaEe 536 (678)
++|-..|++++.+|.+||.-+-.| ||+.++=.-+ ..+.+...++-.|| .+|..| +.+.|.+=.
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mh-----rRlDElV~Rv~~lE-------s~~~~lk~dVsemKpVT~ 71 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMH-----RRLDELVERVTTLE-------SSVSTLKADVSEMKPVTD 71 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-----HhHHHHHHHHHHHH-------HHHHHHHhhHHhccchHH
Confidence 345667788888888888777755 5555543221 23344444444444 444444 445667788
Q ss_pred HHHHHHH
Q 005767 537 EISRWKA 543 (678)
Q Consensus 537 Ei~RWKe 543 (678)
+|.|||-
T Consensus 72 dV~rwkl 78 (112)
T PF07439_consen 72 DVKRWKL 78 (112)
T ss_pred HHHHHHH
Confidence 9999984
No 67
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.87 E-value=87 Score=34.26 Aligned_cols=241 Identities=19% Similarity=0.253 Sum_probs=129.4
Q ss_pred cccccccCC-CccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 005767 324 SGLSESLFL-PQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKR 402 (678)
Q Consensus 324 ~~lsEs~f~-~~etd~ee~l~asl~~~~sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kEn~dI~sLLR~AL~EK 402 (678)
+.||=..|. ++-.- -+.+..+..|+.-+-.|.+.=.+.- .+--+-+.++..+.-+=+.+|.-.--.-++=
T Consensus 24 kpl~r~yFa~~~~Np--------~eQF~~F~~L~~WL~~~~g~~f~~p-~e~DDPn~~~~~Il~~lr~~g~~~df~p~kL 94 (359)
T PF10498_consen 24 KPLSRHYFAVPSTNP--------GEQFYYFTSLCAWLISKAGRKFEQP-QEYDDPNATISNILDELRKLGVPVDFPPSKL 94 (359)
T ss_pred CCCCHHHhcCCCCCc--------hHHHHHHHHHHHHHHHhcCCCCCCC-cccCCHHHHHHHHHHHHHccCCCCCCChHHh
Confidence 456667777 33332 4567778888877777665322211 1334666777766666555552111111111
Q ss_pred cccCCCCchhhHHHHhhhhhhhhccccccccccCCCCCCCCc--ccc-------C----CCcchhhHHhhH-----H---
Q 005767 403 MSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSD--DKA-------N----AMETEEDEIYNL-----A--- 461 (678)
Q Consensus 403 ea~d~~qk~s~llQiAE~GLq~vGfgF~~~~~~g~g~~~~S~--d~~-------~----~~~~ee~Ev~sL-----A--- 461 (678)
..|-.++=-.-|-+.|..-|...||.|.--....+..-..+. |.. . ..+.+.+++..+ .
T Consensus 95 k~G~Ge~vc~VLd~Lad~AL~~~~F~~~~p~~~~e~~e~~~v~ddd~e~~~~~~eee~~~~~~~~dd~~d~~~~~~~~~~ 174 (359)
T PF10498_consen 95 KQGSGEHVCYVLDQLADEALKRKNFKWKRPIYPKEEDEEEDVEDDDAEIILDKVEEEQEIEEDDDDDFIDLNFLDKKTKN 174 (359)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhcCcCccCCCCCccccccccccccchhhhhhhccccccccccchHHHhhHHHHhhhhcc
Confidence 122233444556788999999999998765554444211110 000 0 112222331111 0
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----------HHHHHHHH-HHH
Q 005767 462 -----------------------GALENIVKASQLEIVELRHSVEELRAESSLLKEHL----------EAQAKELS-HRM 507 (678)
Q Consensus 462 -----------------------salE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~----------e~QaKeIa-~~~ 507 (678)
--||+..-.|+.-|. ..-.+=|+-.+.++.+. ..|-.+|. ...
T Consensus 175 ~~~~~~~~~~~i~es~vd~~eWklEvERV~PqLKv~~~---~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~ 251 (359)
T PF10498_consen 175 GDTEEKQKPEEIIESKVDPAEWKLEVERVLPQLKVTIR---ADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDIS 251 (359)
T ss_pred cccccccchhhcccccCCHHHHHHHHHHHhhhheeecc---CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 012333222211100 00011122222222221 12222222 223
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005767 508 KRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSES 580 (678)
Q Consensus 508 ~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLees 580 (678)
.....++-||..+|..+|.|+.+.+.+=.++.-=++.+. .+-.-+.++..+++.+.++|+++|+.|++=
T Consensus 252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~----~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYK----QASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677889999999999999999999888876665553 344446789999999999999999988753
No 68
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=76.58 E-value=85 Score=37.46 Aligned_cols=106 Identities=26% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhh-------------
Q 005767 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKEL-------SHRMKRIEELEEKERIANES------------- 523 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeI-------a~~~~~IkeLEErErv~~en------------- 523 (678)
+-+-+..++.|+.++|+.+.-.++|.++|.......-+.. .....-|+++-.||.=+-+-
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005767 524 -----------VEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQE 569 (678)
Q Consensus 524 -----------VEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqE 569 (678)
+|||=.+|+-.+||+.=|+--.|.-+.=-.-.+..+..-+.+|+.|
T Consensus 112 qvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~E 168 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSE 168 (717)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 69
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.18 E-value=82 Score=30.90 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=81.0
Q ss_pred hhHHHhhhchHHHhhhhh-hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 005767 231 ELEATISGLREEVAKKSS-FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (678)
Q Consensus 231 qLEa~is~lr~eva~k~s-~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L 309 (678)
+.+.++..=++++|+.+- ....++..+..-...+......+..|+..+..++.+|.++..++..|.-+.. +.+.+..+
T Consensus 73 ~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~-~a~a~~~~ 151 (221)
T PF04012_consen 73 QAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN-AAKAQKKV 151 (221)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 344556556778776653 3455666677777888888889999999999999999999999999888877 66677777
Q ss_pred HHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHH
Q 005767 310 DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLT 356 (678)
Q Consensus 310 ~~vi~~vd~~~~~~~~lsEs~f~~~etd~ee~l~asl~~~~sI~eLa 356 (678)
...+..++.+... +.+..|++.+..--..+....+|.
T Consensus 152 ~~~~~~~~~~~a~----------~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 152 NEALASFSVSSAM----------DSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHhccCCccchH----------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777766633331 123346666665555555555555
No 70
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=75.62 E-value=14 Score=42.56 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCc
Q 005767 249 FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (678)
Q Consensus 249 ~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~~~ 321 (678)
..-.+.-++...+..+.+|+.+...+...+..+...+.++.....-|=.|..++.+=.+.|..+++..|.+..
T Consensus 358 k~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~ 430 (722)
T PF05557_consen 358 KLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEET 430 (722)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3334455556667777777777778888888888887777766666666777777777777777777776543
No 71
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.46 E-value=1.8e+02 Score=34.54 Aligned_cols=65 Identities=22% Similarity=0.393 Sum_probs=35.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc----c-hHH--HHHHHHHH-HHHHHHhhhhhhhhhHHH
Q 005767 551 AGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLG----F-KEE--TAAAAMTA-RDAAEKSLRLADTRASRL 615 (678)
Q Consensus 551 AGkaveqE~~~qls~LkqELe~~K~aLeesn~KLK----l-KEE--lAaAAMAA-r~AAEkSLkLAD~RaA~L 615 (678)
+=|.=.++++.++..|.-||......+..+++.++ + ||- =+-.-|.| ++.=||...|-.+=+|+=
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt 614 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET 614 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34555677777788888877766666666666552 3 441 12222222 223356666655544443
No 72
>PRK09039 hypothetical protein; Validated
Probab=75.23 E-value=95 Score=33.39 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=51.5
Q ss_pred hhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhc---ceeeeeehhhHHHhhhchHH-------HhhhhhhHHHHHHHHH
Q 005767 189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRN---FEIAIEVSELEATISGLREE-------VAKKSSFIENLEKSLI 258 (678)
Q Consensus 189 v~KR~neiveel~~Q~da~~k~rn~aReqmeqrn---y~iAIEVSqLEa~is~lr~e-------va~k~s~~e~l~k~~~ 258 (678)
-..+..+.+.+|=.|++++...|.++..+..... -+.---..+|.+.+...+.. |..=.+.++.|.+++.
T Consensus 75 ~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla 154 (343)
T PRK09039 75 GNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLA 154 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3467788889999999999999999888766321 01111122222333333322 3333344444444444
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005767 259 EKDEKVAEIESQGLELRQLVNEYEDKL 285 (678)
Q Consensus 259 eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (678)
.-+..|.+.+....+.+.+++.|...|
T Consensus 155 ~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 155 ALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544444445555555554444
No 73
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.44 E-value=56 Score=30.58 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=36.7
Q ss_pred HHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 005767 213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYED 283 (678)
Q Consensus 213 ~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~ 283 (678)
-+|+-|..|+ .+-.++..++..+ +++.+..+.|..+-..+.++|..++.++..+.+.+.....
T Consensus 104 s~k~~l~~R~-~~~~~~~~~~~~l-------~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~ 166 (218)
T cd07596 104 AVKETLDDRA-DALLTLQSLKKDL-------ASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARK 166 (218)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666 5666666666666 6666666666554444556666555555555544444433
No 74
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.71 E-value=95 Score=30.47 Aligned_cols=109 Identities=23% Similarity=0.277 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH
Q 005767 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANES-VEGLMLDIAAAEEEISR 540 (678)
Q Consensus 462 salE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~en-VEeL~~dIkaaEeEi~R 540 (678)
-+++..+..+...|.+++.++....+....|+ +++.+....|.+++.+=..+... =|+|.... ..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le-------~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~a-------l~ 91 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLE-------RKLDEAEEEAEKWEKQAELALAAGREDLAREA-------LQ 91 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-------HH
Confidence 34566666666666666666666665555554 45555555566666555554333 33433221 12
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005767 541 WKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKL 584 (678)
Q Consensus 541 WKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KL 584 (678)
=+.-|+..++.=+.-...+..++..|+..|..++.-+.+...|.
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444445556666666666666666666666665553
No 75
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.67 E-value=54 Score=37.35 Aligned_cols=57 Identities=19% Similarity=0.098 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 005767 469 KASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVE 525 (678)
Q Consensus 469 K~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVE 525 (678)
.|+|-.+-+|.....++|+.+-+|+.++++|+-+.....-+|+.|=+|....-++-.
T Consensus 300 Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~ 356 (502)
T KOG0982|consen 300 ENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRV 356 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999998887777777777777666555533
No 76
>PRK10698 phage shock protein PspA; Provisional
Probab=73.45 E-value=1.1e+02 Score=31.09 Aligned_cols=168 Identities=18% Similarity=0.181 Sum_probs=96.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHH
Q 005767 457 IYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANES-VEGLMLDIAAAE 535 (678)
Q Consensus 457 v~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~en-VEeL~~dIkaaE 535 (678)
|+.+...+|+--|-+.+=|-+++..+.+.|..+-..-..--.=.+++.+....|.+++.|=+.+.+. =|+|...
T Consensus 15 in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~----- 89 (222)
T PRK10698 15 INALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARA----- 89 (222)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-----
Confidence 4555555555556666666666666666665555544444444567788888899999988887763 4444322
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005767 536 EEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRL 615 (678)
Q Consensus 536 eEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA~L 615 (678)
...=|..|+..++.=+.-.+....++..|++.+.+++..+..+..|- ..|.|=.=+|++--.-.=.++...+..-
T Consensus 90 --AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~---~~L~aR~~~A~a~~~~~~~~~~~~~~~a 164 (222)
T PRK10698 90 --ALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ---QALMLRHQAASSSRDVRRQLDSGKLDEA 164 (222)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCcchH
Confidence 22224555566666666667777777888888888888888877774 3333322222221111111222233333
Q ss_pred HHHHHHHHHhHhhhhhhcc
Q 005767 616 RDRVEELSHQLEEFESRED 634 (678)
Q Consensus 616 ReRIEELtRQLEE~Esre~ 634 (678)
-.+++.+-..+++.|....
T Consensus 165 ~~~f~rmE~ki~~~Ea~ae 183 (222)
T PRK10698 165 MARFESFERRIDQMEAEAE 183 (222)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555554
No 77
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.28 E-value=2.2e+02 Score=35.60 Aligned_cols=119 Identities=25% Similarity=0.268 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005767 466 NIVKASQLEIVELRHSVEELRAESSLLKEHL--EAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKA 543 (678)
Q Consensus 466 ~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~--e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKe 543 (678)
-+||.+-.||.-|++-|-++|.--+-+...- -.+.++...+..+|++|+++=..+-.++..|..... -+.+ -+.
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~-~~~~---~~~ 479 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM-NQLE---IKE 479 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHH---HHH
Confidence 3678889999999999999986433221110 012223333334444444332222222222222211 0111 112
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH
Q 005767 544 AAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKE 588 (678)
Q Consensus 544 AcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKE 588 (678)
-...+...=+.-++.+++++..++.|+.+++..|..-+-.+.--+
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~ 524 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQE 524 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223455555667888888889999999988887665554444333
No 78
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.10 E-value=2.7e+02 Score=35.46 Aligned_cols=169 Identities=17% Similarity=0.292 Sum_probs=108.4
Q ss_pred cchhhHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 005767 451 ETEEDEIYNLAGALENIVKASQL----------EIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK---E 517 (678)
Q Consensus 451 ~~ee~Ev~sLAsalE~~mK~~ql----------EI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEEr---E 517 (678)
+...++|..|..++++.+...+. .+.+|++...++....+.+..-+..++-.++....+|+++|-. .
T Consensus 774 ~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~ 853 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKK 853 (1293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44677888899999888776543 3455666666666666777777777888899999999999966 1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 005767 518 RIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQ-ELEEAKQALSESEKKLGFKEETAAAAMT 596 (678)
Q Consensus 518 rv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~Lkq-ELe~~K~aLeesn~KLKlKEElAaAAMA 596 (678)
.+=+..+.++..-|.+.+.|+- ++..++ +-+.-+.+++.++-.+.- .+..-|.-++.++.++.. -++.++
T Consensus 854 ~~d~~~l~~~~~~ie~l~kE~e----~~qe~~-~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~----l~~~i~ 924 (1293)
T KOG0996|consen 854 VVDKKRLKELEEQIEELKKEVE----ELQEKA-AKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDK----LEADIA 924 (1293)
T ss_pred cCcHHHHHHHHHHHHHHHHHHH----HHHHhh-hHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHH----HHHHHH
Confidence 1112234566666666666653 232222 224777888887744433 344445555555655542 222333
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHhHhhhhh
Q 005767 597 ARDAAEKSLRLADTRASRLRDRVEELSHQLEEFES 631 (678)
Q Consensus 597 Ar~AAEkSLkLAD~RaA~LReRIEELtRQLEE~Es 631 (678)
=..+ .++-+|...+..+.-|.+|+|-++..+.
T Consensus 925 k~~~---~i~~s~~~i~k~q~~l~~le~~~~~~e~ 956 (1293)
T KOG0996|consen 925 KLTV---AIKTSDRNIAKAQKKLSELEREIEDTEK 956 (1293)
T ss_pred HhHH---HHhcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3332 3567899999999999999998887765
No 79
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.20 E-value=60 Score=38.26 Aligned_cols=76 Identities=28% Similarity=0.417 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005767 508 KRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKL 584 (678)
Q Consensus 508 ~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KL 584 (678)
..++.|++.-+-|---++++=..|-..+.++.+.+.-...++--++- ++.++..|..|+.+|.+-+.-.++.+.||
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~re-i~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDRE-IRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333446667777777778888777777766666665 55566777777777777777777666655
No 80
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=71.17 E-value=1e+02 Score=33.20 Aligned_cols=76 Identities=20% Similarity=0.359 Sum_probs=50.6
Q ss_pred hhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHh
Q 005767 290 SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQK 369 (678)
Q Consensus 290 ~~r~lL~dql~~v~~ihd~L~~vi~~vd~~~~~~~~lsEs~f~~~etd~ee~l~asl~~~~sI~eLa~ev~~K~~~~~E~ 369 (678)
..=|.|++-|..++.||...-++...+.. +|......-..++.--.+-..|..++..-++.
T Consensus 312 ~~lP~lv~RL~tL~~lH~~a~~~~~~l~~-------------------le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~ 372 (388)
T PF04912_consen 312 PSLPSLVERLKTLKSLHEEAAEFSQTLSE-------------------LESQQSDLQSQLKKWEELLNKVEEKFKENMET 372 (388)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888888877762 22333323334444445555777777777777
Q ss_pred hHHHHhhHHHHHHHH
Q 005767 370 KSREVKSLNEAVGQL 384 (678)
Q Consensus 370 k~ke~k~Le~~V~~L 384 (678)
-...++.|+..|..|
T Consensus 373 i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 373 IEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHhcc
Confidence 777777777777654
No 81
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=70.33 E-value=1.1e+02 Score=37.49 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHH
Q 005767 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDE 83 (678)
Q Consensus 29 ~~~~~~l~ael~~er~~r~aae~s~~e~~~~~~rlkala~ea~~krde~~r~rd~ 83 (678)
-++++++..+++...+.-.+-...+.+-...-.||+.+-|+.=..|+.....++.
T Consensus 187 l~klkq~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~~ 241 (984)
T COG4717 187 LEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALRDA 241 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777666666666666677777777777777777777766665554
No 82
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.87 E-value=2.1e+02 Score=32.74 Aligned_cols=58 Identities=28% Similarity=0.310 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005767 524 VEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESE 581 (678)
Q Consensus 524 VEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn 581 (678)
+.+-+.++...=.+|..+-..+-..+..=+.-+.+.++.+..++..|..+|--|+-+|
T Consensus 377 i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~n 434 (560)
T PF06160_consen 377 IQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSN 434 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444555555566666666666667777777777777777777766655
No 83
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=69.12 E-value=2.3e+02 Score=33.08 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=37.6
Q ss_pred HHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 005767 268 ESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (678)
Q Consensus 268 e~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd 317 (678)
+.+...|++.+..++..+..-+.+.-+|.+-|..+..+.|....-+...-
T Consensus 282 ~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aR 331 (546)
T PF07888_consen 282 QQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQAR 331 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556778888888888877778888899999888888877766555543
No 84
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.00 E-value=78 Score=33.92 Aligned_cols=84 Identities=25% Similarity=0.323 Sum_probs=60.9
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 005767 455 DEIYNLAGALENIVKASQLEIVELRHSVEELR----AESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLD 530 (678)
Q Consensus 455 ~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsR----sE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~d 530 (678)
.-+.++.-.+.+....++.|+.+|+....+.. .+...++.-+..+-++|......+.+++.+=.=++..|+.....
T Consensus 168 ~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~ 247 (312)
T smart00787 168 ELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777888888899999999999999974 48888888888888888888888888886644444444444444
Q ss_pred HHHHHHHH
Q 005767 531 IAAAEEEI 538 (678)
Q Consensus 531 IkaaEeEi 538 (678)
+.+...+|
T Consensus 248 k~e~~~~I 255 (312)
T smart00787 248 KSELNTEI 255 (312)
T ss_pred HHHHHHHH
Confidence 44444333
No 85
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.47 E-value=35 Score=29.44 Aligned_cols=51 Identities=29% Similarity=0.421 Sum_probs=36.4
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhH
Q 005767 252 NLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302 (678)
Q Consensus 252 ~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v 302 (678)
+|++-+.+||+.|+.|-.|+..|-...-.+..-++.|..+..-+-.++.-+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999888887777777777766665555554444443
No 86
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=65.87 E-value=1.6e+02 Score=30.07 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 509 RIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALS 578 (678)
Q Consensus 509 ~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLe 578 (678)
.|..+...-..+...+...-..+.-++.+..|++.-.+.-+-.... .++....+..++.++..+++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~-~d~~~~~~~~a~~~l~~~~~~~~ 159 (327)
T TIGR02971 91 AAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASD-LDSKALKLRTAEEELEEALASRS 159 (327)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443444445567778888889999999999987643332222 33333445555566665555544
No 87
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=65.16 E-value=1.8e+02 Score=30.23 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQ 547 (678)
Q Consensus 468 mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcEl 547 (678)
+++++.++.+|.....+.+.+++.+..- .+=|.++...+..|..-.+...+-+=.+-.||-..|-.|..=+..++.
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~e----e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENE----EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777766666666665554332 255556666666655544444444445577787777777766555554
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005767 548 EAAAGRAVEQEFVAQLSSLKQELEEAKQA 576 (678)
Q Consensus 548 EaeAGkaveqE~~~qls~LkqELe~~K~a 576 (678)
-... +.-+..++.-||.++++++..
T Consensus 79 ~~~~----i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 79 RQEK----IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3333 233334557788888888776
No 88
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=64.01 E-value=93 Score=26.61 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 005767 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKEL-SHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWK 542 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeI-a~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWK 542 (678)
|.+.+..++..+......+.....-...++...+..-..| ......|.-|++++..+-..++..-.
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~------------- 71 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKE------------- 71 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 5566666777777777777777766777777777666666 44567777788777766555544221
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005767 543 AAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLG 585 (678)
Q Consensus 543 eAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLK 585 (678)
.....+..++..|.+.+..+..+...++..|+
T Consensus 72 -----------~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 72 -----------NKLKVLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12444556666666666666666666655544
No 89
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=64.00 E-value=64 Score=37.08 Aligned_cols=109 Identities=21% Similarity=0.343 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 471 SQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAA 550 (678)
Q Consensus 471 ~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEae 550 (678)
+..++.+++.++++.+..+.....-+. +.+++..+..+|++|... ++... .+|..+-+|+..=+.-.....+
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~------~ik~p-~~i~~~~~e~d~lk~e~~~~~~ 233 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKK------DIKNP-LELQKIKEEFDKLKKEGKADKQ 233 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhc------cCCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999988777777 788999999999999973 34332 4677777888888888888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhcch
Q 005767 551 AGRAVEQEFVAQLSSLKQELEEAKQA----LSESEKKLGFK 587 (678)
Q Consensus 551 AGkaveqE~~~qls~LkqELe~~K~a----Leesn~KLKlK 587 (678)
+=+..-+++++....+++.+.++|+| +....+|..++
T Consensus 234 ~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~ 274 (555)
T TIGR03545 234 KIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIK 274 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCC
Confidence 88888889999999999999998875 44455555553
No 90
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.65 E-value=77 Score=32.18 Aligned_cols=68 Identities=10% Similarity=0.142 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 005767 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEI 538 (678)
Q Consensus 468 mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi 538 (678)
+..++.++.+|+..|.+.+.++. ..+.+-.++++.....|.+|+++-.=+.+-++.+-.++..++.+.
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888877777776643 455555566677777777777666555555555555554444443
No 91
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.64 E-value=3.9e+02 Score=33.62 Aligned_cols=75 Identities=17% Similarity=0.358 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHH---HHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 005767 31 RFREVLAELNRERQAREAAENSATELSE---KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEV 105 (678)
Q Consensus 31 ~~~~l~ael~~er~~r~aae~s~~e~~~---~~~rlkala~ea~~krde~~r~rd~a~r~ke~~~~~~~~~s~el~~v 105 (678)
.++||..+|+-=|..|.---.-+-|++. .|.-|-.|---.+-+--++.|+--.+-.++++++-..++.-.++.+.
T Consensus 232 QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ 309 (1243)
T KOG0971|consen 232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADT 309 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777666665443333444432 23333333334444555566666666667788888888887777644
No 92
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.39 E-value=4.2e+02 Score=33.99 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHH-----HHHHHHHHhhhccchhHHHHHHhhhHHH
Q 005767 37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDE-----ALREKEEILRSNDKLSTEIAEVNIAKDE 111 (678)
Q Consensus 37 ael~~er~~r~aae~s~~e~~~~~~rlkala~ea~~krde~~r~rd~-----a~r~ke~~~~~~~~~s~el~~v~~~~de 111 (678)
..++..-++...++.--.+++.-+.++|.-..+.-+ .+...+|-.. -+.+.+ ..+.++++.+.+.....+.
T Consensus 451 ~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~---~~~~~l~~~~~~~~eele~ 526 (1317)
T KOG0612|consen 451 EKLDEKCQAVAELEEMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEE---AKKRKLEALVRQLEEELED 526 (1317)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 334555555556666777888888888877666554 2222222111 111111 1234566666666666666
Q ss_pred HHHHHHHH
Q 005767 112 VVKQLDEV 119 (678)
Q Consensus 112 ~~kq~d~~ 119 (678)
+++..+..
T Consensus 527 ~q~~~~~~ 534 (1317)
T KOG0612|consen 527 AQKKNDNA 534 (1317)
T ss_pred HHHHHHHH
Confidence 66655554
No 93
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=62.83 E-value=63 Score=38.78 Aligned_cols=96 Identities=22% Similarity=0.258 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---hhHhHHHHHHHhhHH--------HHHHHHhhhhhhHHHHHH-----HHHHHH
Q 005767 26 DFSVERFREVLAELNRERQAREAAE---NSATELSEKFNRLKA--------LAHESIKRRDESTRQRDE-----ALREKE 89 (678)
Q Consensus 26 ~~s~~~~~~l~ael~~er~~r~aae---~s~~e~~~~~~rlka--------la~ea~~krde~~r~rd~-----a~r~ke 89 (678)
-+--+.+..|-.|.|.|=-+--.+. ..+.-|..-|.+-|+ |...+-+=.+|+...=.+ .|++|-
T Consensus 458 ~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kl 537 (762)
T PLN03229 458 LALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKL 537 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence 3556777777778887643322221 112222223444344 444466667788777777 789999
Q ss_pred HHhhhccc---hhHHHHHHhhhHHHHHHHHHHHhh
Q 005767 90 EILRSNDK---LSTEIAEVNIAKDEVVKQLDEVTK 121 (678)
Q Consensus 90 ~~~~~~~~---~s~el~~v~~~~de~~kq~d~~~~ 121 (678)
++|++--+ +|.--.....-++++-|+|.++..
T Consensus 538 e~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~ 572 (762)
T PLN03229 538 DMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMD 572 (762)
T ss_pred HHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcc
Confidence 99988766 444333466678888888888544
No 94
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=62.47 E-value=1.8e+02 Score=33.57 Aligned_cols=83 Identities=25% Similarity=0.362 Sum_probs=63.3
Q ss_pred hhhhhhhHHHHHhhhhcceeeee----ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 005767 206 ATAKSRNDVREQMEQRNFEIAIE----VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (678)
Q Consensus 206 a~~k~rn~aReqmeqrny~iAIE----VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~ 281 (678)
-|..+|.--|..+|+|...+-.+ .+.+=..|.++...|.+=.+.++.+.+.+......-..+-.++..|++....+
T Consensus 13 nt~~aRr~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~ 92 (618)
T PF06419_consen 13 NTLEARRNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEEL 92 (618)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999999987665554 46677778888888888888888888888877777777777888888877777
Q ss_pred HHHhhch
Q 005767 282 EDKLKNL 288 (678)
Q Consensus 282 e~kl~~~ 288 (678)
+.|-+-+
T Consensus 93 ~~k~~ll 99 (618)
T PF06419_consen 93 ELKKKLL 99 (618)
T ss_pred HHHHHHH
Confidence 6665433
No 95
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=62.47 E-value=3.1e+02 Score=32.13 Aligned_cols=132 Identities=26% Similarity=0.339 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhHHHHHH
Q 005767 461 AGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIA----------NESVEGLMLD 530 (678)
Q Consensus 461 AsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~----------~enVEeL~~d 530 (678)
...-+..+..++.+|.+|...+++...+...|+..+..-..++.+......+||....+. -+||+.|=.-
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345567778888888888888888888888888888877788888887777777665543 2455444444
Q ss_pred HHHHHHHH----HHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHH
Q 005767 531 IAAAEEEI----SRW---KAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAA 592 (678)
Q Consensus 531 IkaaEeEi----~RW---KeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAa 592 (678)
|.+.++=+ ..| |.-...|...=+.............-+++..+++.+.+....++-||++-.
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~ 471 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYK 471 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333221 122 222222222222222222222334446666666677777777777776644
No 96
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=60.50 E-value=2.1e+02 Score=30.51 Aligned_cols=47 Identities=30% Similarity=0.349 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 469 KASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (678)
Q Consensus 469 K~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEE 515 (678)
+.+..++..|.+.-.++..+...|..--+...++|.......++|.+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555666665555555543
No 97
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=58.95 E-value=1.4e+02 Score=29.68 Aligned_cols=106 Identities=22% Similarity=0.434 Sum_probs=53.1
Q ss_pred hHHHHHHHhhhhhhhh--------hhhHHHHHhhhhcceeeeeehhhHHHhh-hchHHHhhhhhhHHHHHHHHHHhHHHH
Q 005767 194 NEIVEELVGQIDATAK--------SRNDVREQMEQRNFEIAIEVSELEATIS-GLREEVAKKSSFIENLEKSLIEKDEKV 264 (678)
Q Consensus 194 neiveel~~Q~da~~k--------~rn~aReqmeqrny~iAIEVSqLEa~is-~lr~eva~k~s~~e~l~k~~~eke~ki 264 (678)
+.+.+||+||+-.--. =||+.+.-+.. | ....+.++. |.|.-+.. + ....+.+.+|
T Consensus 65 ~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~--y-----~~l~~s~~~f~~rk~l~~-----e---~~~~~l~~~i 129 (189)
T PF10211_consen 65 SQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDA--Y-----QTLYESSIAFGMRKALQA-----E---QGKQELEEEI 129 (189)
T ss_pred HHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHH-----H---HHHHHHHHHH
Confidence 4567999999977544 44554443332 3 233444443 33332222 1 1123334455
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhchh--------hhchhhHHhhhhHHHHHHHHHHHHh
Q 005767 265 AEIESQGLELRQLVNEYEDKLKNLE--------SHRPLLVDQLNYVSKIHDQVDDIIK 314 (678)
Q Consensus 265 ~ele~E~~~Lk~~v~e~e~kl~~~e--------~~r~lL~dql~~v~~ihd~L~~vi~ 314 (678)
+.++.+...|...+.++..+...++ ...+...+.++++.+....|.+-++
T Consensus 130 ~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 130 EELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555554444444443322 3345556666666666666655544
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=58.35 E-value=2.5e+02 Score=29.75 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 463 ALENIVKASQLEIVELRHSVEELR 486 (678)
Q Consensus 463 alE~~mK~~qlEI~eLr~sleEsR 486 (678)
....+.+.|..-|.+.|+.+++.-
T Consensus 72 ly~~~c~EL~~~I~egr~~~~~~E 95 (325)
T PF08317_consen 72 LYQFSCRELKKYISEGRQIFEEIE 95 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999888773
No 99
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=57.95 E-value=84 Score=29.15 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=43.7
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 005767 196 IVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (678)
Q Consensus 196 iveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~el 267 (678)
.++.++.+.+. .+.-+..++.+-..|-++|=..-.++..+..+|.++..+......|..+..++..+...+
T Consensus 18 ~l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 18 KLDAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554 334455666666677777766666777888888888888888777777777776665544
No 100
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.78 E-value=2.2e+02 Score=28.87 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 005767 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGL 527 (678)
Q Consensus 463 alE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL 527 (678)
.+..-...+..+|.+|...++-++....+|+..+..|.++|+....+|..++.-.+-+.--+...
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666777777777777777888888888888888888888888886665544433333
No 101
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.54 E-value=3.1e+02 Score=32.72 Aligned_cols=122 Identities=15% Similarity=0.143 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 005767 464 LENIVKASQLEIVELRHSVEE-LRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWK 542 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleE-sRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWK 542 (678)
+-+-++-.|-.-+.-+|.|.+ .---.-.|+...+.|-|+|+.....|+-++++--++++..|+..---.-.+.=..|-+
T Consensus 564 L~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~ 643 (741)
T KOG4460|consen 564 LSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLL 643 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445566666666666666643 2444567888899999999999999999999999999988876554444444444444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005767 543 AAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLG 585 (678)
Q Consensus 543 eAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLK 585 (678)
.-+--+.----.++-+|.+++-.+..+++.+-.+++-+..|.+
T Consensus 644 ~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~ 686 (741)
T KOG4460|consen 644 HSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKD 686 (741)
T ss_pred hcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4333333333456889999999999999999999988766543
No 102
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.50 E-value=81 Score=31.89 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=36.4
Q ss_pred HHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 005767 216 EQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELR 275 (678)
Q Consensus 216 eqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk 275 (678)
.+-.++-=+++=|-.+|.+.+..+..++..-....+.+++.+...+.+++++++++..+.
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334455566777777777777776666666776666666666666655444443
No 103
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=56.25 E-value=13 Score=33.16 Aligned_cols=109 Identities=29% Similarity=0.359 Sum_probs=31.6
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005767 453 EEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIA 532 (678)
Q Consensus 453 ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIk 532 (678)
..+||.+.-..|...+..+..++.+|+..++++......++... ..|...-..+.+..+++. .
T Consensus 19 d~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~--------------~~l~~~l~~aq~~a~~~~---~ 81 (131)
T PF05103_consen 19 DPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEE--------------ESLQRALIQAQETADEIK---A 81 (131)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH--------------HHHHHhhhhhhhhHHHHH---H
Confidence 45789999999999999999999999999988887766654322 111111111112222221 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005767 533 AAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESE 581 (678)
Q Consensus 533 aaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn 581 (678)
.|+.|+..=..-+..++. .++.+-..++..|..+++.+|.....-.
T Consensus 82 ~A~~eA~~i~~~A~~~a~---~i~~~A~~~~~~l~~~~~~lk~~~~~~~ 127 (131)
T PF05103_consen 82 EAEEEAEEIIEEAQKEAE---EIIEEARAEAERLREEIEELKRQAEQFR 127 (131)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244444433333333332 2455666666777777777766554433
No 104
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.51 E-value=46 Score=34.36 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEEL 513 (678)
Q Consensus 462 salE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeL 513 (678)
..+|+++..-..-..+|+++|+.++.|+..|+-.+|.+.-+|.+...+=++|
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888899999999999999999999999888887766655543
No 105
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=55.19 E-value=3.8e+02 Score=30.88 Aligned_cols=14 Identities=7% Similarity=0.275 Sum_probs=5.6
Q ss_pred hhhhHHHHHHHHHH
Q 005767 298 QLNYVSKIHDQVDD 311 (678)
Q Consensus 298 ql~~v~~ihd~L~~ 311 (678)
.++++.++...|..
T Consensus 481 ~~~~~~~~~~~l~~ 494 (650)
T TIGR03185 481 AITIADKAKKTLKE 494 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 106
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=55.11 E-value=95 Score=33.06 Aligned_cols=86 Identities=24% Similarity=0.325 Sum_probs=32.7
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHhhhhc--ceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhH
Q 005767 194 NEIVEELVGQIDATAKSRNDVREQMEQRN--FEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQG 271 (678)
Q Consensus 194 neiveel~~Q~da~~k~rn~aReqmeqrn--y~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~ 271 (678)
+-+++.|=.|++.+.+.|+.-..-+.+=+ ....=++.+++..++.|..|...-..+.+.|++.-.+-+..+..++.+.
T Consensus 8 ~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 8 DLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777776555443333 1122234556666666766667777777777766666666666666655
Q ss_pred HHHHHHHH
Q 005767 272 LELRQLVN 279 (678)
Q Consensus 272 ~~Lk~~v~ 279 (678)
..|.+.-.
T Consensus 88 ~~l~~eE~ 95 (314)
T PF04111_consen 88 EELDEEEE 95 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 107
>PRK12704 phosphodiesterase; Provisional
Probab=54.94 E-value=86 Score=35.67 Aligned_cols=17 Identities=0% Similarity=0.069 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHhhhc
Q 005767 301 YVSKIHDQVDDIIKIVD 317 (678)
Q Consensus 301 ~v~~ihd~L~~vi~~vd 317 (678)
-+..++......+..+.
T Consensus 132 ~~~~~~~~~~~~l~~~a 148 (520)
T PRK12704 132 ELEELIEEQLQELERIS 148 (520)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334444444444443
No 108
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.85 E-value=60 Score=29.53 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHhhchhhhchhhHH
Q 005767 270 QGLELRQLVNEYEDKLKNLESHRPLLVD 297 (678)
Q Consensus 270 E~~~Lk~~v~e~e~kl~~~e~~r~lL~d 297 (678)
++.+++-.+..+.+.++.+..+-.+|++
T Consensus 73 ~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 73 ELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333344444443
No 109
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.33 E-value=86 Score=29.88 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHHHhhchhh
Q 005767 269 SQGLELRQLVNEYEDKLKNLES 290 (678)
Q Consensus 269 ~E~~~Lk~~v~e~e~kl~~~e~ 290 (678)
..+..|++.|..++.+|..|.+
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566666666655553
No 110
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.10 E-value=67 Score=31.47 Aligned_cols=68 Identities=31% Similarity=0.393 Sum_probs=41.0
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHH
Q 005767 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (678)
Q Consensus 230 SqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~d 297 (678)
++....|..|+.+++.-...+.+|.-.+.+|..-+..+.-|+..|.=-+..+|.+++.++.-+.-|++
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555556666666666666666667777777777777777777755555554
No 111
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=53.24 E-value=2e+02 Score=30.72 Aligned_cols=129 Identities=19% Similarity=0.279 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH----------HHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcc
Q 005767 27 FSVERFREVLAELNRERQAREAAENSATELSE----------KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSND 96 (678)
Q Consensus 27 ~s~~~~~~l~ael~~er~~r~aae~s~~e~~~----------~~~rlkala~ea~~krde~~r~rd~a~r~ke~~~~~~~ 96 (678)
.-+.+|+.++.+|+.=...|..-+..+-+... ..+.++.+-++- |+.-+
T Consensus 192 ~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~ll~~~~~~e~lF~~e---------------------L~kf~ 250 (339)
T cd09238 192 SIVGTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVMATTGSYDALFKEE---------------------LKKYD 250 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhhhhhHHHHHHH---------------------HHHHh
Confidence 44788999999999888888776655533222 223333333332 33355
Q ss_pred chhHHHHHHhhhHHHHHHHHHHHhh----hhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhh---hhcccCCCCCCC
Q 005767 97 KLSTEIAEVNIAKDEVVKQLDEVTK----ARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEK---ISGKVSNFKNFS 169 (678)
Q Consensus 97 ~~s~el~~v~~~~de~~kq~d~~~~----~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ek---is~k~s~~k~f~ 169 (678)
.+.+.|.+-...-+.+.+++..+-. .+++ ...+++-+...+.|-.+..+ |...+.--..
T Consensus 251 ~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~~~------------~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~k-- 316 (339)
T cd09238 251 SVREAVSKNISSQDDLLSRLRALNEKFSQIFDV------------EGWRAATESHATQIRAAVAKYRELREGMEEGLR-- 316 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------chhHHHHHHHHHHHHHHHHHHHHHHHchHHHHH--
Confidence 5555555544444445555543322 2222 11223333444555544443 3333322223
Q ss_pred CCCCCCCccccCchhHHHHhhhchhHHHH
Q 005767 170 AGGLPRSQKYTGLPAVVYGVIKRTNEIVE 198 (678)
Q Consensus 170 ~~~lP~SqKYtGl~avaygv~KR~neive 198 (678)
-|++|.-++-+|-+.+.+.|-
T Consensus 317 --------FY~dL~~~~~~l~~~~~~fv~ 337 (339)
T cd09238 317 --------FYSGFQEAVRRLKQECEDFVM 337 (339)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHh
Confidence 388998888888887777663
No 112
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.13 E-value=1.2e+02 Score=28.92 Aligned_cols=82 Identities=27% Similarity=0.343 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHH
Q 005767 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHL--EAQAKELSHRMKRIEELEEKERIANESVEGL-MLDIAAAEEEISR 540 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~--e~QaKeIa~~~~~IkeLEErErv~~enVEeL-~~dIkaaEeEi~R 540 (678)
|..-...++.++.+|+..+-.++++..-|.... +.=...|.++...|+.|+.|=.-+-.+-... -.++..++.+..+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~ 156 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKK 156 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 344456666666666666666666665555432 2234567777777777777766655543222 2467788888888
Q ss_pred HHHHH
Q 005767 541 WKAAA 545 (678)
Q Consensus 541 WKeAc 545 (678)
|+..+
T Consensus 157 ~~k~w 161 (169)
T PF07106_consen 157 WRKEW 161 (169)
T ss_pred HHHHH
Confidence 87654
No 113
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=53.12 E-value=4.4e+02 Score=30.96 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=31.6
Q ss_pred HhhhhhHHHHHHHHHHHhHHHHHhhHHHHh----------------hHHHHHHHHHHhhhhHHHHHH
Q 005767 346 LAGMESIYQLTRIVVEKTRDLVQKKSREVK----------------SLNEAVGQLVKEKEHIVSLLR 396 (678)
Q Consensus 346 l~~~~sI~eLa~ev~~K~~~~~E~k~ke~k----------------~Le~~V~~L~kEn~dI~sLLR 396 (678)
+..++.+.+-.+.+...+..+.+.-++-.. +.-+.|...-|.+.||...|.
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~ 512 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILS 512 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566666666666666666665554333222 333667777788888877765
No 114
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=52.91 E-value=4.7e+02 Score=31.26 Aligned_cols=110 Identities=25% Similarity=0.308 Sum_probs=53.8
Q ss_pred hHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005767 455 DEIYNLAGALENIVKAS---QLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDI 531 (678)
Q Consensus 455 ~Ev~sLAsalE~~mK~~---qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dI 531 (678)
.|+.+.+.-|.=+|.++ |.-|.+|++-++.+|.... +....+-+. .|.++.-...++++ .=-.|
T Consensus 228 ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~---~~N~~~~~~------~~~~i~~~~~~L~~----kd~~i 294 (629)
T KOG0963|consen 228 EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA---KANSSKKLA------KIDDIDALGSVLNQ----KDSEI 294 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhc------cCCchHHHHHHHhH----HHHHH
Confidence 44555555555566554 4555555555554443321 111111111 44455545555554 22234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 532 AAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQAL 577 (678)
Q Consensus 532 kaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aL 577 (678)
+..=.+|.|-+.+...|.++-++.|.-+++++...+.+|++++.-|
T Consensus 295 ~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 295 AQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555566666666666555555555555555555555443
No 115
>PLN03188 kinesin-12 family protein; Provisional
Probab=52.64 E-value=6.3e+02 Score=32.65 Aligned_cols=81 Identities=26% Similarity=0.370 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch-HHHHHHHHHHHH------HHHHhhhhhhhhhHHHHHHHHHHHH
Q 005767 552 GRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFK-EETAAAAMTARD------AAEKSLRLADTRASRLRDRVEELSH 624 (678)
Q Consensus 552 GkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlK-EElAaAAMAAr~------AAEkSLkLAD~RaA~LReRIEELtR 624 (678)
|-+.+.=+-.+|++|+-|-++-+.-|-.=|+-|+.. -.||-|--||=+ =||.++-+|-.|+....+--+++++
T Consensus 1153 ~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k 1232 (1320)
T PLN03188 1153 ESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYK 1232 (1320)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888899888888888887777766543 234444444422 2788899999999999999999999
Q ss_pred hHhhhhhh
Q 005767 625 QLEEFESR 632 (678)
Q Consensus 625 QLEE~Esr 632 (678)
|++-.-..
T Consensus 1233 ~~~klkrk 1240 (1320)
T PLN03188 1233 QIDKLKRK 1240 (1320)
T ss_pred HHHHHHHH
Confidence 98876543
No 116
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.56 E-value=4.6e+02 Score=31.06 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005767 498 AQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAG 552 (678)
Q Consensus 498 ~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAG 552 (678)
++..+|..+..++..|. -.++.++-+.+--++++|-|..|-..+|+.|..+=
T Consensus 489 k~~~E~e~le~~l~~l~---l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki 540 (581)
T KOG0995|consen 489 KCRKEIEKLEEELLNLK---LVLNTSMKEAEELVKSIELELDRMVATGEEERQKI 540 (581)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544 35666667777788999999999999998886543
No 117
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=52.54 E-value=4.6 Score=46.35 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhhhhhhccccCCCCCceeeccccccccccc
Q 005767 616 RDRVEELSHQLEEFESREDSRGRNRPRYVCWPWQWLGMDFV 656 (678)
Q Consensus 616 ReRIEELtRQLEE~Esre~~~~r~~~RyvCWPWq~L~l~~v 656 (678)
..+|+.|.+.+|+.-... -.--+.|.=-|-.+|+++-
T Consensus 635 ~~~i~~lE~~~e~~k~~~----~~EekLi~sa~y~~g~~~~ 671 (713)
T PF05622_consen 635 DRRIESLEKELEKSKQMR----EQEEKLIVSAWYNLGMRLH 671 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHH
Confidence 345566666555444222 2345677778888888774
No 118
>PF13166 AAA_13: AAA domain
Probab=52.32 E-value=4.1e+02 Score=30.32 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=24.7
Q ss_pred hHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhh
Q 005767 184 AVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQ 220 (678)
Q Consensus 184 avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeq 220 (678)
.-....+...|..+++.=..++.-.+..+.++.....
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~ 402 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWL 402 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777777777777777777655543
No 119
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=52.23 E-value=3.5e+02 Score=29.55 Aligned_cols=143 Identities=20% Similarity=0.262 Sum_probs=95.2
Q ss_pred cccCCCCCCCCCC--CCCCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhh
Q 005767 160 GKVSNFKNFSAGG--LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237 (678)
Q Consensus 160 ~k~s~~k~f~~~~--lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is 237 (678)
....+..|+|++. -|.+-+|..-...---....|++.+..--+.+..+..=|.....-+.|=--.+ -.|-.++=.
T Consensus 171 ~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl---~~Q~~~vn~ 247 (384)
T PF03148_consen 171 TQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDL---RAQADAVNA 247 (384)
T ss_pred HHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4566788988765 57776666322233446778888888888888888777766544333311111 123333334
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh------hhch---hhHH--hhhhHHHH
Q 005767 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE------SHRP---LLVD--QLNYVSKI 305 (678)
Q Consensus 238 ~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e------~~r~---lL~d--ql~~v~~i 305 (678)
.|+.-+..--..-..|+-.+..-...|.++++++..|++-|..-++-|+=+. .+|| +-.| |.+++.-|
T Consensus 248 al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev 326 (384)
T PF03148_consen 248 ALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEV 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHH
Confidence 4555555555566678888888899999999999999999999998887555 7788 5555 44544433
No 120
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=50.53 E-value=5.1e+02 Score=30.98 Aligned_cols=133 Identities=22% Similarity=0.266 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhh----
Q 005767 459 NLAGALENIVKASQLEIVELRHSVEELRAE----SSLLKEHLEAQAKE-------LSHRMKRIEELEEKERIANES---- 523 (678)
Q Consensus 459 sLAsalE~~mK~~qlEI~eLr~sleEsRsE----~~~Lq~l~e~QaKe-------Ia~~~~~IkeLEErErv~~en---- 523 (678)
+=-+.++..|.++|.-|.+-+.++...++- .........-=-++ |.....++..|.+.=.-+|++
T Consensus 196 ~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 196 EQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 334567777888877777777777776665 22222222222333 444555555555554555544
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-------chHHHH
Q 005767 524 ----VEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLG-------FKEETA 591 (678)
Q Consensus 524 ----VEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLK-------lKEElA 591 (678)
+.-+-+-.---+.||.+--.-.+..=++-...++....||+.|.+++...+..++++..||+ +|.||-
T Consensus 276 ~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELs 354 (629)
T KOG0963|consen 276 KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELS 354 (629)
T ss_pred cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 22233333346889999999999999999999999999999999999999999999999996 566653
No 121
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=50.40 E-value=1.7e+02 Score=28.39 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=30.2
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHH---hHHHHHHHHHHHHHHhhc
Q 005767 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIES---QGLELRQLVNEYEDKLKN 287 (678)
Q Consensus 239 lr~eva~k~s~~e~l~k~~~eke~ki~ele~---E~~~Lk~~v~e~e~kl~~ 287 (678)
.+..+....+..++|..+|.+++..|..|.. -+.+|+..|..|..+.+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666666666666 555666666666665553
No 122
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=50.04 E-value=6.1e+02 Score=31.71 Aligned_cols=74 Identities=28% Similarity=0.353 Sum_probs=55.2
Q ss_pred hhHHHHHHHhhhhh---hhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 005767 193 TNEIVEELVGQIDA---TAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (678)
Q Consensus 193 ~neiveel~~Q~da---~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~ 269 (678)
-|+-|+++=++.+. -+.+-.++-++|+|----..+|+-+|.-+++.+...-+...+..+++ +.+||...+++-.
T Consensus 471 L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~---l~~KD~~~~~~~~ 547 (980)
T KOG0980|consen 471 LNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDL---LKQKDRLAAELVA 547 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHhhHHHHHHHHH
Confidence 45666666665554 55566677788887766777888899999999999988888888888 6778777665433
No 123
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.00 E-value=6.4e+02 Score=31.91 Aligned_cols=295 Identities=21% Similarity=0.300 Sum_probs=139.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCccchhHHHHH
Q 005767 264 VAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIR 343 (678)
Q Consensus 264 i~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~~~~~~~lsEs~f~~~etd~ee~l~ 343 (678)
+.+|..+.+.||.+-.+=-.||++|+..+--|---.-+-++|-....++=+.+-+..-.-+ +--++-+.++
T Consensus 233 vrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~k---------eaqe~ke~~k 303 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAK---------EAQEAKERYK 303 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 4555555557777777777777777755444433344555666666655555543321100 0011223344
Q ss_pred HHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHH---HHHHHhhhhcccCCCCchhhHHHHhhh
Q 005767 344 ASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS---LLRSALSKRMSVDPSSKTNELFKVAEN 420 (678)
Q Consensus 344 asl~~~~sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kEn~dI~s---LLR~AL~EKea~d~~qk~s~llQiAE~ 420 (678)
.-++....-.++++. =+||-+.+...|...|..|.+.++.+.. +||+-..++--.-+-+....+.|+=.-
T Consensus 304 ~emad~ad~iEmaTl-------dKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqq 376 (1243)
T KOG0971|consen 304 EEMADTADAIEMATL-------DKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQ 376 (1243)
T ss_pred HHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHH
Confidence 344444444444433 3444444555666666666666666554 444444433111111222222222111
Q ss_pred hhhhhccccccccccCCCCCCCCccccCCCcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005767 421 GLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQA 500 (678)
Q Consensus 421 GLq~vGfgF~~~~~~g~g~~~~S~d~~~~~~~ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~Qa 500 (678)
.- .=+|-++-| -.+--.-.+.+..|...+|-.++|...|+...|.=.
T Consensus 377 N~-----------------------------rLKdalVrL----RDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Ls 423 (1243)
T KOG0971|consen 377 NA-----------------------------RLKDALVRL----RDLSASEKQDHQKLQKELEKKNSELEELRRQKERLS 423 (1243)
T ss_pred HH-----------------------------HHHHHHHHH----HhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 00 000111111 001111123444455555555666666666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHH-HHH
Q 005767 501 KELSHRMKRIEELEEKERIA---NESVEGLM-------LDIAAAEEEISRWKAAAEQEAAAGRAV---EQEFVAQL-SSL 566 (678)
Q Consensus 501 KeIa~~~~~IkeLEErErv~---~enVEeL~-------~dIkaaEeEi~RWKeAcElEaeAGkav---eqE~~~ql-s~L 566 (678)
.++.+.+..|-+|.|+=--+ -+=|+-|+ --|+..|++|.-. +|-.-+ .+|.++++ .-|
T Consensus 424 r~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dl--------Ealee~~EQL~Esn~ele~DL 495 (1243)
T KOG0971|consen 424 RELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDL--------EALEEMNEQLQESNRELELDL 495 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 66666666676666552211 11233332 2345556665432 221111 23444443 678
Q ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhHhhh
Q 005767 567 KQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEF 629 (678)
Q Consensus 567 kqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA~LReRIEELtRQLEE~ 629 (678)
.+||+.++.+.-+.++.. +||-+++-==|-=.-..|+++-.|+-||-+.
T Consensus 496 reEld~~~g~~kel~~r~--------------~aaqet~yDrdqTI~KfRelva~Lqdqlqe~ 544 (1243)
T KOG0971|consen 496 REELDMAKGARKELQKRV--------------EAAQETVYDRDQTIKKFRELVAHLQDQLQEL 544 (1243)
T ss_pred HHHHHHHhhHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998888887754 3333333323334445555555555555443
No 124
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.00 E-value=2.4e+02 Score=33.67 Aligned_cols=41 Identities=32% Similarity=0.335 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005767 458 YNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEA 498 (678)
Q Consensus 458 ~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~ 498 (678)
+.--..++++++.++.||..|+.-+++.+.+.+.|+.-.+.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678888888888888888888887777777665543
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.41 E-value=3.7e+02 Score=28.99 Aligned_cols=67 Identities=27% Similarity=0.247 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 465 ENIVKASQLEIVELRHSVEELRAESS--------------------------LLKEHLEAQAKELSHRMKRIEELEEKER 518 (678)
Q Consensus 465 E~~mK~~qlEI~eLr~sleEsRsE~~--------------------------~Lq~l~e~QaKeIa~~~~~IkeLEErEr 518 (678)
....+.|..-|.+-|+-+.+.-.++. .+|.++-.|||.. =|.=|.+.|+.=..
T Consensus 69 ~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~-WYeWR~kllegLk~ 147 (312)
T smart00787 69 QFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKM-WYEWRMKLLEGLKE 147 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 56788888899998888887755554 3344444444432 12224455555556
Q ss_pred HhhhhhHHHHHHHH
Q 005767 519 IANESVEGLMLDIA 532 (678)
Q Consensus 519 v~~enVEeL~~dIk 532 (678)
.|.+|+++|-.|-+
T Consensus 148 ~L~~~~~~l~~D~~ 161 (312)
T smart00787 148 GLDENLEGLKEDYK 161 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655433
No 126
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=48.82 E-value=4.5e+02 Score=29.83 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 005767 501 KELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRW 541 (678)
Q Consensus 501 KeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RW 541 (678)
.+|..+...|+.|..|+. .++++++.-+...+.|+..+
T Consensus 304 ~ele~RL~~l~~LkrKyg---~s~e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 304 NEIEERLAQIKRLKRKYG---ASVEEVLEYAEKIKEELDQL 341 (563)
T ss_pred HHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHH
Confidence 335555555666665555 58888888888888777653
No 127
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.28 E-value=4.7e+02 Score=32.20 Aligned_cols=138 Identities=26% Similarity=0.314 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHH--------H-----------hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 005767 468 VKASQLEIVELRHSVEEL--------R-----------AESSLLKEHL---EAQAKELSHRMKRIEELEEKERIANESVE 525 (678)
Q Consensus 468 mK~~qlEI~eLr~sleEs--------R-----------sE~~~Lq~l~---e~QaKeIa~~~~~IkeLEErErv~~enVE 525 (678)
|--+|.|+.+||+.|--+ | -|.--||+|- ..|-+|. ..-.+ .+..-.|
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es---~k~~e-------~lq~kne 458 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQES---LKSQE-------LLQSKNE 458 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHH---HHhHH-------HHHHhHH
Confidence 889999999999887533 1 1233344442 2333222 22222 3344478
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 005767 526 GLMLDIAAAEEEISRWKAAAE---QEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAE 602 (678)
Q Consensus 526 eL~~dIkaaEeEi~RWKeAcE---lEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAE 602 (678)
+|+..|.---+|=.|.+.... +|.--+| +.|+-+.+-+|.||+++-+.+.-+.-||. |||
T Consensus 459 ellk~~e~q~~Enk~~~~~~~ekd~~l~~~k---q~~d~e~~rik~ev~eal~~~k~~q~kLe--------------~se 521 (861)
T PF15254_consen 459 ELLKVIENQKEENKRLRKMFQEKDQELLENK---QQFDIETTRIKIEVEEALVNVKSLQFKLE--------------ASE 521 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------------HHH
Confidence 999999888888888887753 3444443 47888889999999999998877655552 223
Q ss_pred H---hhhhh-hhhhHHHHHHHHHHHHhHhhhhhhc
Q 005767 603 K---SLRLA-DTRASRLRDRVEELSHQLEEFESRE 633 (678)
Q Consensus 603 k---SLkLA-D~RaA~LReRIEELtRQLEE~Esre 633 (678)
+ -|.+. --|-|+. .|+.||||-|--+-++-
T Consensus 522 kEN~iL~itlrQrDaEi-~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 522 KENQILGITLRQRDAEI-ERLRELTRTLQNSMAKL 555 (861)
T ss_pred hhhhHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 2 12221 1133333 47789999988765543
No 128
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.26 E-value=2.9e+02 Score=27.53 Aligned_cols=89 Identities=28% Similarity=0.362 Sum_probs=42.5
Q ss_pred CcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh
Q 005767 450 METEEDEIYNLAGALENIVKASQLEIVELRHSVEEL---RAESSLLKEHLEAQAKELSHRMKRIEELEEKERIA----NE 522 (678)
Q Consensus 450 ~~~ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEs---RsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~----~e 522 (678)
++..-.-...-...+...+..++.+|.+|+..++.. |.+++ .+ ...-.++.+....++.|...-.-. -+
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~---eR-~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESE---ER-EELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 444444455555555666666666666666666665 22330 11 112233333344444443322211 13
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 005767 523 SVEGLMLDIAAAEEEISRWK 542 (678)
Q Consensus 523 nVEeL~~dIkaaEeEi~RWK 542 (678)
.|+.+..++.-+=+.+.||-
T Consensus 136 ~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555666663
No 129
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=47.96 E-value=5e+02 Score=30.12 Aligned_cols=148 Identities=26% Similarity=0.312 Sum_probs=92.2
Q ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH------HHHHHHHH---HHHHHHH
Q 005767 476 VELRHSVEELR-AESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLD------IAAAEEEI---SRWKAAA 545 (678)
Q Consensus 476 ~eLr~sleEsR-sE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~d------IkaaEeEi---~RWKeAc 545 (678)
++|-+-+..+| .++.+=|.+..+|.=-..++|..|+.||.++-.-.-+.|.|-.+ ..+-|+|. .=||.--
T Consensus 132 n~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmd 211 (552)
T KOG2129|consen 132 NPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMD 211 (552)
T ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444445 23333344555666678899999999999988777777777433 23445554 3599887
Q ss_pred HHHHHhhhhHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH
Q 005767 546 EQEAAAGRAVEQEFVAQ----------------------------LSSLKQELEEAKQALSESEKKLGFKEETAAAAMTA 597 (678)
Q Consensus 546 ElEaeAGkaveqE~~~q----------------------------ls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAA 597 (678)
.+|.+ +...++--+| |-.|+-|++++|..+-.+++-- -|+|+ -
T Consensus 212 kLe~e--kr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~--~ek~~-----q 282 (552)
T KOG2129|consen 212 KLEQE--KRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSY--QEKLM-----Q 282 (552)
T ss_pred HHHHH--HHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----H
Confidence 77765 3334433233 5678999999999998887543 33332 2
Q ss_pred HHHHHHhhhhhhhhhHHHH----HHHHHHHHhHhhhhhh
Q 005767 598 RDAAEKSLRLADTRASRLR----DRVEELSHQLEEFESR 632 (678)
Q Consensus 598 r~AAEkSLkLAD~RaA~LR----eRIEELtRQLEE~Esr 632 (678)
-.|-+++.+=+..|--++. +|-|-|.|+|+|.++-
T Consensus 283 y~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsess 321 (552)
T KOG2129|consen 283 YRAEEVDHREENERLQRKLINELERREALCRMLSESESS 321 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 2333445544444443332 4567799999998875
No 130
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.91 E-value=1.2e+02 Score=33.61 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=24.8
Q ss_pred HHHHHHHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005767 538 ISRWKAAA---EQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEK 582 (678)
Q Consensus 538 i~RWKeAc---ElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~ 582 (678)
+..|.... ..+...-.....++..++..|+++|.+++..|....+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44455433 2333334444556666667777777777666655544
No 131
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=47.36 E-value=5.4e+02 Score=30.29 Aligned_cols=92 Identities=24% Similarity=0.370 Sum_probs=61.9
Q ss_pred hhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 005767 202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (678)
Q Consensus 202 ~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~ 281 (678)
+-+|-+++.|-.+. |++..|...+-.||--+.++...+..-...+.+-...++.++-|...++-++..+
T Consensus 99 ~~l~e~~~~ra~~e-----------~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~l 167 (546)
T KOG0977|consen 99 KLLDETARERAKLE-----------IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKAL 167 (546)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 34555666664433 3444555555555555555555555555555555677788888888999999999
Q ss_pred HHHhhchhhhchhhHHhhhhHHH
Q 005767 282 EDKLKNLESHRPLLVDQLNYVSK 304 (678)
Q Consensus 282 e~kl~~~e~~r~lL~dql~~v~~ 304 (678)
|+.++.+..+..=|.++|+.+.+
T Consensus 168 e~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 168 EDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 99998888888878888777765
No 132
>PRK04406 hypothetical protein; Provisional
Probab=47.22 E-value=1.2e+02 Score=26.46 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (678)
Q Consensus 465 E~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEEr 516 (678)
++++..+..-|.+|.-.+.-.=--++.|-..+-.|-++|..++.+++.|-+|
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666555566666667777777777777766666433
No 133
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.90 E-value=2.9e+02 Score=31.55 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=13.0
Q ss_pred hhhhhhHhhhhhhhhhhhhhhhhhc
Q 005767 136 AKDGLRSEIENSAHMLVTGIEKISG 160 (678)
Q Consensus 136 ~~~~l~~ei~~s~~mL~sg~ekis~ 160 (678)
..+.+..+......-...-+|+|+|
T Consensus 119 eLee~~~e~~~~~~~~~~~le~~a~ 143 (514)
T TIGR03319 119 NLDEKEEELEELIAEQREELERISG 143 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444555555544444555566654
No 134
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.66 E-value=5.9e+02 Score=30.59 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=29.6
Q ss_pred hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005767 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (678)
Q Consensus 237 s~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e 280 (678)
.-|++.+.+=...++.|.+...+|-..+.++..+...|-..++.
T Consensus 99 ~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 99 GTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35777778878888888777777777777666644444444333
No 135
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.08 E-value=3.1e+02 Score=27.22 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Q 005767 468 VKASQLEIVELRHSVEELRAESS 490 (678)
Q Consensus 468 mK~~qlEI~eLr~sleEsRsE~~ 490 (678)
+-+++.+|.+++...+.++..+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444433
No 136
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=46.08 E-value=3.6e+02 Score=27.92 Aligned_cols=28 Identities=14% Similarity=0.439 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 005767 510 IEELEEKERIANESVEGLMLDIAAAEEE 537 (678)
Q Consensus 510 IkeLEErErv~~enVEeL~~dIkaaEeE 537 (678)
|..+|+.++++.+-+.+.=.++..+...
T Consensus 19 ~dk~EDp~~~l~Q~ird~~~~l~~ar~~ 46 (225)
T COG1842 19 LDKAEDPEKMLEQAIRDMESELAKARQA 46 (225)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444444444433
No 137
>PRK12704 phosphodiesterase; Provisional
Probab=45.44 E-value=3.2e+02 Score=31.31 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=15.0
Q ss_pred hhhhhhhhHhhhhhhhhhhhhhhhhhc
Q 005767 134 TKAKDGLRSEIENSAHMLVTGIEKISG 160 (678)
Q Consensus 134 ~~~~~~l~~ei~~s~~mL~sg~ekis~ 160 (678)
.+.++..+.++.....=...-+++|+|
T Consensus 123 e~eLe~~~~~~~~~~~~~~~~l~~~a~ 149 (520)
T PRK12704 123 QQELEKKEEELEELIEEQLQELERISG 149 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445566666555555555666654
No 138
>PRK11546 zraP zinc resistance protein; Provisional
Probab=45.34 E-value=45 Score=32.60 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=43.6
Q ss_pred HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005767 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (678)
Q Consensus 234 a~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (678)
+....||+++-.|..+...|.-+-.-.+++|..+.+|+..|++++.+.-.++
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888999999999988888889999999999999999888765544
No 139
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=44.93 E-value=3.1e+02 Score=26.90 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005767 477 ELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLM 528 (678)
Q Consensus 477 eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~ 528 (678)
++.+.|-.+-.+...|+..+..+...|..++..+..|+.+-.=+.+.+.+.-
T Consensus 92 el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 92 ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444333333333333
No 140
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=44.68 E-value=2.3e+02 Score=25.33 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 472 QLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEE-LEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEA 549 (678)
Q Consensus 472 qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~Ike-LEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEa 549 (678)
+.++-..+..|+.-|.+...+...+...-.+|.....+|++ +..=..|+.+|-......++.+++|. +.+.-.+.|+
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~-k~~~~k~~ei 83 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEK-KKKEEKEAEI 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 46778888999999999999999999888888888887765 44456777788777777777776664 3333333343
No 141
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=44.25 E-value=1.7e+02 Score=24.46 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhh---H--HHHHHHHHHHHhHh
Q 005767 559 FVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRA---S--RLRDRVEELSHQLE 627 (678)
Q Consensus 559 ~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~Ra---A--~LReRIEELtRQLE 627 (678)
+.+-...+++.+...+.. ++ .+- ..=.+.|||-..|+..+++-..-. . .|.++|++|..+||
T Consensus 23 l~~~a~~i~~~i~~~~~~-----~~-~~~-~~~~~vlaaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~~~le 89 (89)
T PF05164_consen 23 LRKAAELINEKINEIKKK-----YP-KLS-PERLAVLAALNLADELLKLKRELDELEELERLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHHHCTT-----CC-TSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----cC-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 333345555555555443 22 222 233588999999999998754433 3 78888888888875
No 142
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.13 E-value=4e+02 Score=27.95 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHhhchhhhchhhHH
Q 005767 270 QGLELRQLVNEYEDKLKNLESHRPLLVD 297 (678)
Q Consensus 270 E~~~Lk~~v~e~e~kl~~~e~~r~lL~d 297 (678)
+-.++++.++.++.+|.+++....-|+.
T Consensus 55 eF~Emkey~d~L~~~L~~ieki~~Rl~k 82 (243)
T cd07666 55 EFTEMNEYVEAFSQKINVLDKISQRIYK 82 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3448889999998888777744444443
No 143
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=43.90 E-value=62 Score=29.33 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=42.6
Q ss_pred eeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHh---HHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 005767 225 IAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK---DEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 225 iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~ek---e~ki~ele~E~~~Lk~~v~e~e~kl~~~e 289 (678)
||-|+.-||..|+..|+.+. .+++.+--. +..-..+++|+..++..+..+|.+|+.|.
T Consensus 3 V~~eId~lEekl~~cr~~le-------~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLE-------AVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHH-------HHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 56677888888888877664 333333322 33344688999999999999999999998
No 144
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=43.78 E-value=38 Score=31.12 Aligned_cols=78 Identities=26% Similarity=0.358 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhhhcchHHHHHHHH-HHHHHHHHhhhhhhhhhHHHHHHHHHHHHhHhhhhhhccc
Q 005767 558 EFVAQLSSLKQELEEAKQAL-SESEKKLGFKEETAAAAM-TARDAAEKSLRLADTRASRLRDRVEELSHQLEEFESREDS 635 (678)
Q Consensus 558 E~~~qls~LkqELe~~K~aL-eesn~KLKlKEElAaAAM-AAr~AAEkSLkLAD~RaA~LReRIEELtRQLEE~Esre~~ 635 (678)
+..+....+.+||+.+=++| ++||.-+ -.+...-+++ .-..-+++-|+=++.+-.-|+..+.+|...++..+...+.
T Consensus 12 ~ae~~~~~ie~ElEeLTasLFeEAN~MV-a~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~~~~~~ 90 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASLFEEANKMV-ADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESMESESDD 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 34445588999999999999 8888766 2222222222 2334566666666666777777777777777776666553
Q ss_pred c
Q 005767 636 R 636 (678)
Q Consensus 636 ~ 636 (678)
.
T Consensus 91 ~ 91 (100)
T PF06428_consen 91 S 91 (100)
T ss_dssp -
T ss_pred c
Confidence 3
No 145
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.74 E-value=8e+02 Score=31.29 Aligned_cols=125 Identities=18% Similarity=0.291 Sum_probs=80.1
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh---hhchhhHHhhhhHHHHHH
Q 005767 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE---SHRPLLVDQLNYVSKIHD 307 (678)
Q Consensus 231 qLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e---~~r~lL~dql~~v~~ihd 307 (678)
-+|+.|.-+-++|....+.+.++...+..++..|...-.+.......+...+.+++..+ ..||-|...---++.++.
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~ 303 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKK 303 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchh
Confidence 46889999999999999999999888888888877666666666666666666664333 224443332222222222
Q ss_pred HHHHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 005767 308 QVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE 387 (678)
Q Consensus 308 ~L~~vi~~vd~~~~~~~~lsEs~f~~~etd~ee~l~asl~~~~sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kE 387 (678)
. +...+.=.+=++.-..+...+++..++++..++-.-..+.+|
T Consensus 304 r-------------------------------------l~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~feke 346 (1141)
T KOG0018|consen 304 R-------------------------------------LEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKE 346 (1141)
T ss_pred H-------------------------------------HHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222233344455577778888888888887777777776
Q ss_pred hhhHH
Q 005767 388 KEHIV 392 (678)
Q Consensus 388 n~dI~ 392 (678)
-+++.
T Consensus 347 i~~~~ 351 (1141)
T KOG0018|consen 347 IEERS 351 (1141)
T ss_pred HHHHH
Confidence 66654
No 146
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=43.72 E-value=3.2e+02 Score=26.67 Aligned_cols=92 Identities=23% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005767 461 AGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR 540 (678)
Q Consensus 461 AsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~R 540 (678)
|-.--..+-.+..+|..+...+..++.|...|+.--+.=.|.+.+...+|.+|| -.+..+..-|..+|.|
T Consensus 47 aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE-------~~~~~~~~~l~~~E~e--- 116 (140)
T PF10473_consen 47 AENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE-------SLNSSLENLLQEKEQE--- 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005767 541 WKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEA 573 (678)
Q Consensus 541 WKeAcElEaeAGkaveqE~~~qls~LkqELe~~ 573 (678)
+..+.+++...+..|..++.++
T Consensus 117 -----------k~q~~e~~~~~ve~L~~ql~~L 138 (140)
T PF10473_consen 117 -----------KVQLKEESKSAVEMLQKQLKEL 138 (140)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHhhh
No 147
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=42.88 E-value=1.9e+02 Score=32.52 Aligned_cols=198 Identities=12% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHHHH-
Q 005767 110 DEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYG- 188 (678)
Q Consensus 110 de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~avayg- 188 (678)
|+..+.+|..+. ..++...+|+.+|.....+++.-+..+....++.-...+...|.+..-+.-+....+
T Consensus 77 devk~h~d~~~~----------~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 146 (424)
T PF03915_consen 77 DEVKKHIDSGIG----------GLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTS 146 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhccchh----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCC
Q ss_pred -----------------------hhhchhHHHHHHHhhhhh-----------hhhhh-hHHHHHhhhhcceeeeeehhhH
Q 005767 189 -----------------------VIKRTNEIVEELVGQIDA-----------TAKSR-NDVREQMEQRNFEIAIEVSELE 233 (678)
Q Consensus 189 -----------------------v~KR~neiveel~~Q~da-----------~~k~r-n~aReqmeqrny~iAIEVSqLE 233 (678)
+-+.+.+.+..+..|+.+ +.+.+ +..+..+..+...+-=-|..|+
T Consensus 147 ~~~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQ 226 (424)
T PF03915_consen 147 KSDLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQ 226 (424)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhchHHHhhh-----hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH-HHHhhchhhhchhhHHhhhhHHHHHH
Q 005767 234 ATISGLREEVAKK-----SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY-EDKLKNLESHRPLLVDQLNYVSKIHD 307 (678)
Q Consensus 234 a~is~lr~eva~k-----~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~-e~kl~~~e~~r~lL~dql~~v~~ihd 307 (678)
..|-.||.+|+.| -..++.+.+.+..-...|..++.-+..+|-..... |..|.+.=.-+.||-.|-+++.-+.+
T Consensus 227 D~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~e 306 (424)
T PF03915_consen 227 DLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKE 306 (424)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhc
Q 005767 308 QVDDIIKIVD 317 (678)
Q Consensus 308 ~L~~vi~~vd 317 (678)
-|..+...+.
T Consensus 307 Dl~k~~etf~ 316 (424)
T PF03915_consen 307 DLKKASETFA 316 (424)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 148
>PRK14140 heat shock protein GrpE; Provisional
Probab=42.83 E-value=2.5e+02 Score=28.54 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=15.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 005767 262 EKVAEIESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 262 ~ki~ele~E~~~Lk~~v~e~e~kl~~~e 289 (678)
.+|.+++.+..+|+++.--+-+.+.|+.
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~r 71 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666555555555554
No 149
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.79 E-value=4.6e+02 Score=28.21 Aligned_cols=132 Identities=18% Similarity=0.299 Sum_probs=73.6
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 005767 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (678)
Q Consensus 230 SqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L 309 (678)
+++.....++-.+|.+--.-++.+.....+.+++|.++..++..|+..|..++.-| ..+..+|-+++-.+ +
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I---~~r~~~l~~raRAm---q--- 111 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI---VERQELLKKRARAM---Q--- 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---H---
Confidence 44555555555555555666666666666667777766666666666666666655 35555555554221 1
Q ss_pred HHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHH------HHHHhHHHHHhhHHHHhhHHHHHHH
Q 005767 310 DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRI------VVEKTRDLVQKKSREVKSLNEAVGQ 383 (678)
Q Consensus 310 ~~vi~~vd~~~~~~~~lsEs~f~~~etd~ee~l~asl~~~~sI~eLa~e------v~~K~~~~~E~k~ke~k~Le~~V~~ 383 (678)
++++.. + ..-.+-+.+||.|+..- |..==.+.++-.+..++.|+.+=..
T Consensus 112 ------~nG~~t--~-----------------Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~ 166 (265)
T COG3883 112 ------VNGTAT--S-----------------YIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAA 166 (265)
T ss_pred ------HcCChh--H-----------------HHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 122211 0 11123344555544332 2222245667777777888887777
Q ss_pred HHHhhhhHHHHH
Q 005767 384 LVKEKEHIVSLL 395 (678)
Q Consensus 384 L~kEn~dI~sLL 395 (678)
|.+.++.+..++
T Consensus 167 l~~~~e~l~al~ 178 (265)
T COG3883 167 LEDKLETLVALQ 178 (265)
T ss_pred HHHHHHHHHHHH
Confidence 777777665544
No 150
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=42.73 E-value=4e+02 Score=27.46 Aligned_cols=201 Identities=22% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHH
Q 005767 33 REVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEV 112 (678)
Q Consensus 33 ~~l~ael~~er~~r~aae~s~~e~~~~~~rlkala~ea~~krde~~r~rd~a~r~ke~~~~~~~~~s~el~~v~~~~de~ 112 (678)
.|+-+-+..-+.--...|.-..++..++.-+..-..+--+-=+++.+-=.+.+-+++.. ......++..+.+.||.+
T Consensus 5 ~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~---~~~~~~~i~~~~~erdq~ 81 (207)
T PF05010_consen 5 KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ---KELSEAEIQKLLKERDQA 81 (207)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhc
Q 005767 113 VKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKR 192 (678)
Q Consensus 113 ~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR 192 (678)
..-|.. +++|.+=|...++|.-+-+++|+. -+..|. |-
T Consensus 82 ~~dL~s-------------------------~E~sfsdl~~ryek~K~vi~~~k~----------NEE~Lk-------k~ 119 (207)
T PF05010_consen 82 YADLNS-------------------------LEKSFSDLHKRYEKQKEVIEGYKK----------NEETLK-------KC 119 (207)
T ss_pred HHHHHH-------------------------HHhhHHHHHHHHHHHHHHHHHHHH----------hHHHHH-------HH
Q ss_pred hhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHH
Q 005767 193 TNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGL 272 (678)
Q Consensus 193 ~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~ 272 (678)
+.+.++-|-.+-...-.=+.-|-++++.-|-+|+=-.++..+-+.+|+--+-+--.-+.+|+++|..|...+.
T Consensus 120 ~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~------- 192 (207)
T PF05010_consen 120 IEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENE------- 192 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred HHHHHHHHHHHHh
Q 005767 273 ELRQLVNEYEDKL 285 (678)
Q Consensus 273 ~Lk~~v~e~e~kl 285 (678)
+|-..|++|=.++
T Consensus 193 ELtkICDeLI~k~ 205 (207)
T PF05010_consen 193 ELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHh
No 151
>smart00721 BAR BAR domain.
Probab=42.52 E-value=3.2e+02 Score=26.27 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=53.8
Q ss_pred hhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHH--HHHhHHHHHH
Q 005767 189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKS--LIEKDEKVAE 266 (678)
Q Consensus 189 v~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~--~~eke~ki~e 266 (678)
||.-........++.+..+.|-|+.+|-.|+.-. +.|+ ++.+. -...+ ++.+
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~-------~kl~------------------~~~~~~~~~~~~-kl~~ 174 (239)
T smart00721 121 FILPLLNFLLGEFKEIKKARKKLERKLLDYDSAR-------HKLK------------------KAKKSKEKKKDE-KLAK 174 (239)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-------HHHH------------------HHHHhccCChhh-hhhh
Confidence 3444444555566777777777888777776321 1111 11110 00022 5666
Q ss_pred HHHhHHHHHHHHHHHHHHh----hchh---------hhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 005767 267 IESQGLELRQLVNEYEDKL----KNLE---------SHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (678)
Q Consensus 267 le~E~~~Lk~~v~e~e~kl----~~~e---------~~r~lL~dql~~v~~ihd~L~~vi~~vd 317 (678)
.+.++...++..+.+-..+ -.+- ....++.-|+.+...+++.|.++..-++
T Consensus 175 ~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 175 AEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666655555544432222 2222 2223344477788888888887776655
No 152
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=41.30 E-value=4.3e+02 Score=27.50 Aligned_cols=109 Identities=16% Similarity=0.260 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 005767 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWK 542 (678)
Q Consensus 463 alE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWK 542 (678)
.+++++..+....++-...+++.+...+.++.-...... .....+..|+.+++-+.+++..|...+...-..+..+.
T Consensus 187 ~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e---~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~ 263 (297)
T PF02841_consen 187 SMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEE---KQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQ 263 (297)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555555555555444444333322222 22345666888888888888888766555443222222
Q ss_pred HHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005767 543 AAAEQ--EAAAGRAVEQEFVAQLSSLKQELEEAK 574 (678)
Q Consensus 543 eAcEl--EaeAGkaveqE~~~qls~LkqELe~~K 574 (678)
+-.-. .-+-.+-..+.|......|.+|+..++
T Consensus 264 e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 264 ERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 21110 111112233446677777777777654
No 153
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=41.22 E-value=3.9e+02 Score=26.98 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 005767 508 KRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFK 587 (678)
Q Consensus 508 ~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlK 587 (678)
...+.|.+|+.. ...++.+...+.+++..|.--..=+++.--+.+.-..--+.....+..++..+..-+...++||+=|
T Consensus 112 ~~dknL~eReeL-~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 112 SEDKNLAEREEL-QRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHcCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777664 6778888888888888888877777776655555443333334444444444444444445555444
Q ss_pred H
Q 005767 588 E 588 (678)
Q Consensus 588 E 588 (678)
|
T Consensus 191 e 191 (194)
T PF15619_consen 191 E 191 (194)
T ss_pred h
Confidence 3
No 154
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.03 E-value=5.3e+02 Score=28.44 Aligned_cols=90 Identities=18% Similarity=0.319 Sum_probs=66.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005767 456 EIYNLAGALENIVKASQLEIVELRH----SVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDI 531 (678)
Q Consensus 456 Ev~sLAsalE~~mK~~qlEI~eLr~----sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dI 531 (678)
-+-.+.+.+..++..++..+..|.. .|+.-.+-.-.|-..++..-++.........+..+++.-++++|.+++.++
T Consensus 224 qm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L 303 (359)
T PF10498_consen 224 QMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTREL 303 (359)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3555666666666666665555444 455555555666677777788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005767 532 AAAEEEISRWKAAA 545 (678)
Q Consensus 532 kaaEeEi~RWKeAc 545 (678)
+..=+|+-.=|.-.
T Consensus 304 ~~IseeLe~vK~em 317 (359)
T PF10498_consen 304 AEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 98777766555443
No 155
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=40.53 E-value=2.7e+02 Score=24.83 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005767 466 NIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKA 543 (678)
Q Consensus 466 ~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKe 543 (678)
-.+..++.|+..+-+.+--.++..+-+..-+..|.+++...+..+-+||..-+-+- ..-|+||.|-|.
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK----------~~YEeEI~rLr~ 71 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK----------QQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34566777777777777777777777777888888888888888888885433222 233666666653
No 156
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=40.35 E-value=3.8e+02 Score=26.60 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 005767 475 IVELRHSVEELRAESSLLKEHLE 497 (678)
Q Consensus 475 I~eLr~sleEsRsE~~~Lq~l~e 497 (678)
+..++..+...+.+.+.|+...+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544433
No 157
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=40.15 E-value=2.2e+02 Score=25.75 Aligned_cols=87 Identities=22% Similarity=0.228 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------------------------HHHH
Q 005767 459 NLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKEL-------------------------------SHRM 507 (678)
Q Consensus 459 sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeI-------------------------------a~~~ 507 (678)
.....+..-+..++..|.+|..++.+.+.=.+-|..+.....+++ -...
T Consensus 6 ~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~ 85 (126)
T TIGR00293 6 AELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAE 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHH
Confidence 344556666667777777777777776665555555433211111 1122
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005767 508 KRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (678)
Q Consensus 508 ~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAc 545 (678)
.-++-|+.|-..+..+++.|..+|....++++.|....
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777777777777777766554
No 158
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.61 E-value=3.6e+02 Score=26.00 Aligned_cols=65 Identities=18% Similarity=0.376 Sum_probs=28.8
Q ss_pred hhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005767 206 ATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (678)
Q Consensus 206 a~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e 280 (678)
+|.|+=.+|...+-+ -+-++=++|+.-|.++..| ++.|..++-+-.+-...+..+|.+++..+..
T Consensus 36 vTrr~m~~A~~~v~k-------ql~~vs~~l~~tKkhLsqR---Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~ 100 (126)
T PF07889_consen 36 VTRRSMSDAVASVSK-------QLEQVSESLSSTKKHLSQR---IDRVDDKLDEQKEISKQIKDEVTEVREDVSQ 100 (126)
T ss_pred HHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455555555443322 2334455666666666544 3344444444333333333334333333333
No 159
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=39.21 E-value=6.4e+02 Score=28.85 Aligned_cols=203 Identities=15% Similarity=0.265 Sum_probs=110.0
Q ss_pred HHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhh-------hhhhcccCCCCCCCCCCCC
Q 005767 102 IAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGI-------EKISGKVSNFKNFSAGGLP 174 (678)
Q Consensus 102 l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~-------ekis~k~s~~k~f~~~~lP 174 (678)
|..+-.+-+.+...|+++...=...|...+..-.--..++..+-+-+|.+-.++ ..|...++.|...
T Consensus 114 l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l------ 187 (569)
T PRK04778 114 LDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVEL------ 187 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHH------
Confidence 333444444444455554444444444444444444445555544444444444 3444555555554
Q ss_pred CCccccCchhHHHHhhhchhHHHHHHHhhhhhh----hh----------hhhHHHHHhhhhcceeeeeehhhHHHhhhch
Q 005767 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDAT----AK----------SRNDVREQMEQRNFEIAIEVSELEATISGLR 240 (678)
Q Consensus 175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~----~k----------~rn~aReqmeqrny~iAIEVSqLEa~is~lr 240 (678)
..+|=+.=|..++..+++=+..|=..|+.- .. .=...=.+|...||-+. --.++..|..++
T Consensus 188 ---~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~--~~~i~~~i~~l~ 262 (569)
T PRK04778 188 ---TESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLD--HLDIEKEIQDLK 262 (569)
T ss_pred ---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCC--CCChHHHHHHHH
Confidence 445777778888888776544433322221 11 11233457888899753 335677888888
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 005767 241 EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (678)
Q Consensus 241 ~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd 317 (678)
+.+..-...+.+| .+..-..++..++..+..|-+.+..-..--+..+...+.+-+.+.-+..--..|..=++.|+
T Consensus 263 ~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 263 EQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777766666666 34445566665666555555555444333344445556666665555555555555555554
No 160
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=39.20 E-value=4.2e+02 Score=26.74 Aligned_cols=108 Identities=24% Similarity=0.360 Sum_probs=68.2
Q ss_pred CCCCCccccCch--------hHHHHhhhchhHHHHHHHh-hhhhhh---hhhhHHHHHhhhhcceeeeeehhhHHHhhhc
Q 005767 172 GLPRSQKYTGLP--------AVVYGVIKRTNEIVEELVG-QIDATA---KSRNDVREQMEQRNFEIAIEVSELEATISGL 239 (678)
Q Consensus 172 ~lP~SqKYtGl~--------avaygv~KR~neiveel~~-Q~da~~---k~rn~aReqmeqrny~iAIEVSqLEa~is~l 239 (678)
.+|-+.-|.+|. .+|.|..-=.-.+|+.+-+ ++|... -+-...=..+|..+|.+.-=-|.|.- +-.+
T Consensus 23 ~vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~k-LL~l 101 (190)
T PF05266_consen 23 KVPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNK-LLSL 101 (190)
T ss_pred cCCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHH-HHHH
Confidence 367777777776 5677777777777777765 444321 12233455778999988776777766 3467
Q ss_pred hHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005767 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (678)
Q Consensus 240 r~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e 280 (678)
+++-.+.......+++.+.+++.....++.++.+|..+|.+
T Consensus 102 k~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~e 142 (190)
T PF05266_consen 102 KDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILE 142 (190)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777888888888888888733333333333333333333
No 161
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=39.08 E-value=73 Score=30.71 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=38.4
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005767 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (678)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (678)
++-|.|.|..+|..+...-..+..|+..+..||.+|. .||..++++...-
T Consensus 75 ~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~-------~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 75 VARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEID-------RLREKLDELNRAN 124 (131)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4557888888888888888889999999999999998 5555555554443
No 162
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=37.79 E-value=12 Score=22.75 Aligned_cols=7 Identities=57% Similarity=1.597 Sum_probs=5.9
Q ss_pred CCceeec
Q 005767 640 RPRYVCW 646 (678)
Q Consensus 640 ~~RyvCW 646 (678)
-+||-||
T Consensus 5 viryccw 11 (11)
T PF08097_consen 5 VIRYCCW 11 (11)
T ss_pred hhheecC
Confidence 4799999
No 163
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=37.34 E-value=3e+02 Score=28.47 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=39.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhchhhhch------------hhHHhhhhHHHHHHHHHHHHhhhcCCC
Q 005767 265 AEIESQGLELRQLVNEYEDKLKNLESHRP------------LLVDQLNYVSKIHDQVDDIIKIVDDGN 320 (678)
Q Consensus 265 ~ele~E~~~Lk~~v~e~e~kl~~~e~~r~------------lL~dql~~v~~ihd~L~~vi~~vd~~~ 320 (678)
-+++++...|+..|..|..+|+|+.+-+. .-.+-.+--++++....+|++.+..+-
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~ 186 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGL 186 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555788899999999999988883222 223345666788888888988887653
No 164
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=37.08 E-value=4e+02 Score=28.40 Aligned_cols=145 Identities=19% Similarity=0.276 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHh
Q 005767 27 FSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVN 106 (678)
Q Consensus 27 ~s~~~~~~l~ael~~er~~r~aae~s~~e~~~~~~rlkala~ea~~krde~~r~rd~a~r~ke~~~~~~~~~s~el~~v~ 106 (678)
..+.+++.++.+|+.=+..|..-+..+-+.-...+=...|.-.. ++ .+ +.+=++ -|+.-+++.+.|.+-.
T Consensus 188 ~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~DDI~~~ll~~~--~~-~~-----e~lf~~--eL~k~~~~~~~l~~~~ 257 (337)
T cd09234 188 AIEKELKRILNKVNEMRKQRRSLEQQLRDAIHEDDITSKLVTTT--GG-DM-----EDLFKE--ELKKHDQLVNLIEQNL 257 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHhc--ch-hH-----HHHHHH--HHHHhhhHHHHHHHHH
Confidence 45889999999999999998887766633222211111111100 00 00 111111 2333555556665555
Q ss_pred hhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhh---hhcccCCCCCCCCCCCCCCccccCch
Q 005767 107 IAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEK---ISGKVSNFKNFSAGGLPRSQKYTGLP 183 (678)
Q Consensus 107 ~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ek---is~k~s~~k~f~~~~lP~SqKYtGl~ 183 (678)
..-+.+-++|.++-..=-+.|...+. ...+-+..-+.|..+..+ |.+++.--..| |++|.
T Consensus 258 ~~Q~~ll~~i~~an~~f~~~r~~~~~-------~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~F----------Y~dL~ 320 (337)
T cd09234 258 AAQENILKALTEANAKYAPVRKALSE-------TKQKRESTISSLIASYEAYEDLLKKSQKGIDF----------YKKLE 320 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHHHH
Confidence 55555555554433211111111122 223333334444444433 33333333344 89999
Q ss_pred hHHHHhhhchhHHHH
Q 005767 184 AVVYGVIKRTNEIVE 198 (678)
Q Consensus 184 avaygv~KR~neive 198 (678)
.++-+|.+++.+.|.
T Consensus 321 ~~v~~~~~~~~~f~~ 335 (337)
T cd09234 321 GNVSKLLQRIKSVCK 335 (337)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888877664
No 165
>PRK00106 hypothetical protein; Provisional
Probab=36.31 E-value=4.9e+02 Score=30.32 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=14.9
Q ss_pred hhhhhhhhHhhhhhhhhhhhhhhhhhc
Q 005767 134 TKAKDGLRSEIENSAHMLVTGIEKISG 160 (678)
Q Consensus 134 ~~~~~~l~~ei~~s~~mL~sg~ekis~ 160 (678)
.+..+..+.++.....-...-+++|+|
T Consensus 138 eeeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 138 SKHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444556666555555555666654
No 166
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.12 E-value=5.1e+02 Score=26.84 Aligned_cols=153 Identities=26% Similarity=0.312 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Q 005767 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANES-VEGLMLDIAAAEEEISRW 541 (678)
Q Consensus 463 alE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~en-VEeL~~dIkaaEeEi~RW 541 (678)
.|+..+.+++.+..++++.+......-.+|. +++.+...++++++.+=+.+-.. .|+|....-+.
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e-------~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~------- 93 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLE-------RKLEEAQARAEKLEEKAELALQAGNEDLAREALEE------- 93 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------
Confidence 4555666666666666666655555443333 45677778888999887766543 46654432221
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH--HHHHHHhhhhhhhhhHHHHHHH
Q 005767 542 KAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTA--RDAAEKSLRLADTRASRLRDRV 619 (678)
Q Consensus 542 KeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAA--r~AAEkSLkLAD~RaA~LReRI 619 (678)
+.-.|.-+++=+....++..++..|+..+..+.+-+.+.+.|. +-+.|..++| +..-.+++--.|+ ..==..+
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~---~~l~ar~~~akA~~~v~~~~~~~s~--~sa~~~f 168 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK---EALKARKAAAKAQEKVNRSLGGGSS--SSAMAAF 168 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCc--hhhHHHH
Confidence 2233444555556667777777777777777777777766653 3344444443 3344566666665 2222333
Q ss_pred HHHHHhHhhhhhhcc
Q 005767 620 EELSHQLEEFESRED 634 (678)
Q Consensus 620 EELtRQLEE~Esre~ 634 (678)
+.+...+++.+.+.+
T Consensus 169 er~e~kiee~ea~a~ 183 (225)
T COG1842 169 ERMEEKIEEREARAE 183 (225)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555555554
No 167
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.75 E-value=1.8e+02 Score=28.23 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=48.5
Q ss_pred cCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHH
Q 005767 180 TGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIE 259 (678)
Q Consensus 180 tGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~e 259 (678)
||..-..+-+|.|+--++-+++..-+.....+..+...-+.. -....++.++...+++.|.+.+..
T Consensus 107 sGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~--------------~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 107 SGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAA--------------EKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhhhhhHHHHHHHHHHHHH
Confidence 588888899999999999888877766555554443221111 001455556667777777776666
Q ss_pred hHHHHHHHHH
Q 005767 260 KDEKVAEIES 269 (678)
Q Consensus 260 ke~ki~ele~ 269 (678)
++..+..+.+
T Consensus 173 ~~~~~~~Lkk 182 (192)
T PF05529_consen 173 KEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHH
Confidence 6665554444
No 168
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.70 E-value=1.1e+03 Score=30.33 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=43.1
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHH
Q 005767 338 MEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSA 398 (678)
Q Consensus 338 ~ee~l~asl~~~~sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kEn~dI~sLLR~A 398 (678)
++..|+....-.+..-+=.++++.+..+|.-.+.+++++|...+..+....+.-..-+.-.
T Consensus 753 ~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~ 813 (1174)
T KOG0933|consen 753 SEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKR 813 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666788888889988888888888888877776665544444333
No 169
>PRK10869 recombination and repair protein; Provisional
Probab=35.53 E-value=7.4e+02 Score=28.47 Aligned_cols=100 Identities=25% Similarity=0.273 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 005767 459 NLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEI 538 (678)
Q Consensus 459 sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi 538 (678)
.++..|+++.-.++--..+|++-++..-.|-++ -.+|.++.-.|..|.-|++. ++++++.-....++|+
T Consensus 265 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~--------l~~ie~Rl~~l~~L~rKyg~---~~~~~~~~~~~l~~eL 333 (553)
T PRK10869 265 GVLDMLEEALIQIQEASDELRHYLDRLDLDPNR--------LAELEQRLSKQISLARKHHV---SPEELPQHHQQLLEEQ 333 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH--------HHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHH
Confidence 344445555444444444444444433333333 45678888899999999984 8998888777777776
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005767 539 SRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKL 584 (678)
Q Consensus 539 ~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KL 584 (678)
..+. .....+..|.+++.+++..+...-.+|
T Consensus 334 ~~L~---------------~~e~~l~~Le~e~~~l~~~l~~~A~~L 364 (553)
T PRK10869 334 QQLD---------------DQEDDLETLALAVEKHHQQALETAQKL 364 (553)
T ss_pred HHhh---------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 223334555555555555554444444
No 170
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=35.37 E-value=15 Score=39.71 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCCCcee--ecccccccccc---cccccccccc
Q 005767 638 RNRPRYV--CWPWQWLGMDF---VGVRRSDVQQ 665 (678)
Q Consensus 638 r~~~Ryv--CWPWq~L~l~~---v~~~~~~~~q 665 (678)
|.-+-|| ||||+-|.+.- |=.|||||..
T Consensus 100 r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE 132 (328)
T KOG2904|consen 100 RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEE 132 (328)
T ss_pred cCChhheeccCccCCceEEecCCeeecCccHHH
Confidence 5578999 99999998864 5569999953
No 171
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=35.29 E-value=2.5e+02 Score=23.39 Aligned_cols=70 Identities=23% Similarity=0.264 Sum_probs=49.5
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhhHHhhhhHHHHHHHHH
Q 005767 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKIHDQVD 310 (678)
Q Consensus 239 lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e-~~r~lL~dql~~v~~ihd~L~ 310 (678)
+.+++-++...+.++.. .+|...|.+++..+.++.+.|..+|..++++. +.|.-+...+..+..-.+.|.
T Consensus 4 l~~~i~~~l~~~~~~~~--~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 4 LTAEIKSKLERIKNLSG--EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHGGGS-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554432 58888999999999999999999999999987 777777777766665555443
No 172
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.50 E-value=4.2e+02 Score=25.34 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005767 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 465 E~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeA 544 (678)
..-+..++.-+.+|.+.+.+.......+......+...........+..+++-..+.+++..+..++.....++..=+..
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~ 159 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREE 159 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555566666666666666666666666666666666666667788888888899999999999999998666665554
Q ss_pred HH
Q 005767 545 AE 546 (678)
Q Consensus 545 cE 546 (678)
++
T Consensus 160 ~~ 161 (191)
T PF04156_consen 160 VQ 161 (191)
T ss_pred HH
Confidence 44
No 173
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=34.24 E-value=3.9e+02 Score=24.88 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=52.1
Q ss_pred CchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHh
Q 005767 181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK 260 (678)
Q Consensus 181 Gl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~ek 260 (678)
||-|+++.- ...++++++||+.=..+. ++++..++.---.+- ..+...+...++.. ...|++|++.+.++
T Consensus 13 GLGa~a~~~-ek~~k~~~~LVkkGe~~~---ee~k~~~~e~~~~~~---e~~~~~~~~~~~~~---~~~~~~le~~~~~~ 82 (118)
T TIGR01837 13 GIGALARVQ-EEGSKFFNRLVKEGELAE---KRGQKRFDESVDAAR---EEVKTALEQTRDQV---QRNWDKLEKAFDER 82 (118)
T ss_pred HHhHHHHHH-HHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHH---HHHhhhHHHHHHHH---HhhHHHHHHHHHHH
Confidence 666666653 668999999998655443 455554432110000 22222232222222 23345555544443
Q ss_pred HHHHH-HH----HHhHHHHHHHHHHHHHHhhchh
Q 005767 261 DEKVA-EI----ESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 261 e~ki~-el----e~E~~~Lk~~v~e~e~kl~~~e 289 (678)
=..+. .| .+++..|+.+|+.|+.+|..+.
T Consensus 83 v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 83 VEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 22211 11 1288899999999999886654
No 174
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.14 E-value=4e+02 Score=25.92 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005767 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKA 543 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKe 543 (678)
+..||..-.-.|...+..+.....+..-|+.. |..+...|+.|.. -+..+|+|-..|.....+..-++.
T Consensus 4 i~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~q-------l~~~d~~i~~Lk~----~~~d~eeLk~~i~~lq~~~~~~~~ 72 (155)
T PF06810_consen 4 IDKIMAENGKDIEAPKAKVDKVKEERDNLKTQ-------LKEADKQIKDLKK----SAKDNEELKKQIEELQAKNKTAKE 72 (155)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 56788887788888888888877766666654 5666677777776 366788888888877777766555
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 005767 544 AAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELS 623 (678)
Q Consensus 544 AcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA~LReRIEELt 623 (678)
..+.+... ++- -.|+..+=...+.|-. .|-||--+ -..|+|-|-.-.+|-+.|+.|.
T Consensus 73 ~~e~~l~~--------------~~~-----~~ai~~al~~akakn~--~av~allD--~d~l~l~~dg~~Gldeqi~~lk 129 (155)
T PF06810_consen 73 EYEAKLAQ--------------MKK-----DSAIKSALKGAKAKNP--KAVKALLD--LDKLKLDDDGLKGLDEQIKALK 129 (155)
T ss_pred HHHHHHHH--------------HHH-----HHHHHHHHHHcCCCCH--HHHHHhcC--HHHeeeCCCccccHHHHHHHHH
Confidence 54443321 111 2233333333344443 33333333 2368888888888888888875
No 175
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.49 E-value=1.6e+02 Score=32.90 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Q 005767 556 EQEFVAQLSSLKQELEEAKQALSESEKKLGFKEE 589 (678)
Q Consensus 556 eqE~~~qls~LkqELe~~K~aLeesn~KLKlKEE 589 (678)
+.+++++|..|+.++.++...+...+..++|=+.
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433333
No 176
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=33.17 E-value=2.3e+02 Score=24.76 Aligned_cols=14 Identities=43% Similarity=0.804 Sum_probs=10.0
Q ss_pred cee-ecccccccccc
Q 005767 642 RYV-CWPWQWLGMDF 655 (678)
Q Consensus 642 Ryv-CWPWq~L~l~~ 655 (678)
.|| ==||+.+|+.+
T Consensus 67 ~~V~e~P~~svgiAa 81 (94)
T PF05957_consen 67 DYVRENPWQSVGIAA 81 (94)
T ss_pred HHHHHChHHHHHHHH
Confidence 355 56999988765
No 177
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.93 E-value=2.4e+02 Score=30.19 Aligned_cols=59 Identities=24% Similarity=0.452 Sum_probs=53.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (678)
Q Consensus 456 Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLE 514 (678)
|+.++=.+|...+++.+.+|.+++++++...+|...|..-++.--.++..+.+|.+-|.
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666778889999999999999999999999999999999999999999999998887
No 178
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=32.82 E-value=4.7e+02 Score=25.37 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=45.4
Q ss_pred HhhHHHHHHHHHH---HHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005767 457 IYNLAGALENIVK---ASQLEIVELRHSVEELR--AESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDI 531 (678)
Q Consensus 457 v~sLAsalE~~mK---~~qlEI~eLr~sleEsR--sE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dI 531 (678)
+..|..++...|+ ..-.+|+++|.....++ .....+...-..-.+-+......++. --+--.++++..||.+|
T Consensus 50 i~~Lv~~v~~y~~~E~~~l~~v~~~R~~~~~~~~~~~~~~~~~~~~~l~~al~~l~~~~e~--yP~Lka~~~~~~l~~~l 127 (186)
T PF04011_consen 50 IPNLVEIVKSYAKHEKETLTKVTKARSQANNLSDSADIQEFQQAEAELSQALSRLLAVVEN--YPELKADENFQQLMAQL 127 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHH---H--SHHHHHHHHHHHHHHHHHHHHHHTT---HHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHc--CCccchhHHHHHHHHHH
Confidence 5566666666554 45556667766666222 12222222222222333333322221 12334677899999999
Q ss_pred HHHHHHHHHHHHHH
Q 005767 532 AAAEEEISRWKAAA 545 (678)
Q Consensus 532 kaaEeEi~RWKeAc 545 (678)
..+|.+|+-+|..-
T Consensus 128 ~~~E~~I~~aR~~Y 141 (186)
T PF04011_consen 128 EETENRIAAARRAY 141 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877653
No 179
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.80 E-value=2.1e+02 Score=26.04 Aligned_cols=63 Identities=29% Similarity=0.283 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhHHHH--HHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHH
Q 005767 248 SFIENLEKSLIEKDEKVAEIESQGLEL--RQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVD 310 (678)
Q Consensus 248 s~~e~l~k~~~eke~ki~ele~E~~~L--k~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~ 310 (678)
..++.|...+...+.++..+|.++..| ++-+..+...+.+++-.=.-|..+++.++.+-+.|.
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666655555 555555555554444444445555666555555443
No 180
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=31.74 E-value=8.8e+02 Score=29.02 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005767 471 SQLEIVELRHSVE---ELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIA 532 (678)
Q Consensus 471 ~qlEI~eLr~sle---EsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIk 532 (678)
.|.+...|...+. .++.-+..|......+-++|...+..+.+|.....-++..+..++.++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~ 272 (670)
T KOG0239|consen 208 AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQ 272 (670)
T ss_pred hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433 4555555555555555555555555555555555555555555555444
No 181
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.43 E-value=4.7e+02 Score=26.71 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 005767 470 ASQLEIVELRHSVEELRAESSLLK 493 (678)
Q Consensus 470 ~~qlEI~eLr~sleEsRsE~~~Lq 493 (678)
..+..+-+|++.+.+++.+...+.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777765554443
No 182
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=31.03 E-value=2.9e+02 Score=27.83 Aligned_cols=39 Identities=33% Similarity=0.395 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005767 533 AAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELE 571 (678)
Q Consensus 533 aaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe 571 (678)
|-|+||-|-|+.|-+=|.+-..-.+|-.++|+.+.++|+
T Consensus 38 AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE 76 (159)
T PF04949_consen 38 AKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELE 76 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443
No 183
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=30.98 E-value=47 Score=23.98 Aligned_cols=17 Identities=47% Similarity=0.817 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhHhhh
Q 005767 613 SRLRDRVEELSHQLEEF 629 (678)
Q Consensus 613 A~LReRIEELtRQLEE~ 629 (678)
.+||.||..|.+||.+-
T Consensus 4 ~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 4 NRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999999999999863
No 184
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.85 E-value=87 Score=28.13 Aligned_cols=53 Identities=13% Similarity=0.357 Sum_probs=36.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhchhhhchhh--HHhhhhHHHHH---HHHHHHHhhh
Q 005767 264 VAEIESQGLELRQLVNEYEDKLKNLESHRPLL--VDQLNYVSKIH---DQVDDIIKIV 316 (678)
Q Consensus 264 i~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL--~dql~~v~~ih---d~L~~vi~~v 316 (678)
|.-+..+..-.|.+|.++..+|+.|+.+..-+ .++++.|+.++ +.|..+++..
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAM 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44455566677888888888888888666555 34777777776 5555566554
No 185
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.76 E-value=6.6e+02 Score=30.21 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=49.3
Q ss_pred hhhhhHHHHHhhhhcceeeeee----hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 005767 208 AKSRNDVREQMEQRNFEIAIEV----SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYED 283 (678)
Q Consensus 208 ~k~rn~aReqmeqrny~iAIEV----SqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~ 283 (678)
..+|.--|.++|.|-..|-+|+ +++--.+-++-++|-+-+.-++++...++-.-..-..+=.+-..|+..-+.+|.
T Consensus 48 ~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~ 127 (655)
T KOG3758|consen 48 LRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLEL 127 (655)
T ss_pred HHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3458888899999877777664 445555666667777777777777666655544433333344445555555544
Q ss_pred Hhhc
Q 005767 284 KLKN 287 (678)
Q Consensus 284 kl~~ 287 (678)
+.+.
T Consensus 128 r~ki 131 (655)
T KOG3758|consen 128 RKKI 131 (655)
T ss_pred HHHH
Confidence 4433
No 186
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=30.34 E-value=2.9e+02 Score=26.45 Aligned_cols=96 Identities=19% Similarity=0.299 Sum_probs=55.5
Q ss_pred chhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCC
Q 005767 97 KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRS 176 (678)
Q Consensus 97 ~~s~el~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~S 176 (678)
++|.+|.-+--+-=.|-++|-.+..-...+.+. .+.+..+..++.++..--.|- -..||+ .+-.+|..|
T Consensus 4 ~i~~~L~pi~ekLisIrR~L~~~~t~~k~~~~~-~~~~~el~~lq~qL~eIe~~R-----~~DGKF---~~~~~g~~~-- 72 (134)
T PF10303_consen 4 PISPELQPIYEKLISIRRSLLSLNTRSKFSDSS-EESSSELKPLQEQLKEIESMR-----DVDGKF---VSPDTGEVP-- 72 (134)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhccCCCccc-cccHHHHHHHHHHHHHHHHhc-----cCCCCe---eCCCCCCCC--
Confidence 456666655555556667777665533332111 334455555666655443333 123433 331122222
Q ss_pred ccccCchhHHHHhhhchhHHHHHHHhhhhh
Q 005767 177 QKYTGLPAVVYGVIKRTNEIVEELVGQIDA 206 (678)
Q Consensus 177 qKYtGl~avaygv~KR~neiveel~~Q~da 206 (678)
-|-++++-|.+-+.+++++++..+-++
T Consensus 73 ---~~gQ~~l~~LLd~C~~li~dl~~~~~~ 99 (134)
T PF10303_consen 73 ---PGGQAVLNGLLDDCFDLIEDLLERKGE 99 (134)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345799999999999999999887764
No 187
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=30.32 E-value=7.8e+02 Score=27.16 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005767 473 LEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAG 552 (678)
Q Consensus 473 lEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAG 552 (678)
.+|.+|..+|+.+.- +-.++.-+|+-||--=-=.-+.||+=..++.+...|-.+--+.|+.-.-+-
T Consensus 18 qKIqelE~QldkLkK--------------E~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~r 83 (307)
T PF10481_consen 18 QKIQELEQQLDKLKK--------------ERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTR 83 (307)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 577788877776643 334455566666644444456688888999999999999999999888888
Q ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhc-chHHHHHHHHHHHH
Q 005767 553 RAVEQEFV---AQLSSLKQELEEAKQALSESEKKLG-FKEETAAAAMTARD 599 (678)
Q Consensus 553 kaveqE~~---~qls~LkqELe~~K~aLeesn~KLK-lKEElAaAAMAAr~ 599 (678)
..+--|+. .||..|.-.|...|..++..+..|+ +|.||--+-++|..
T Consensus 84 qKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 84 QKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77777764 4678888888888888888888885 68898888888873
No 188
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.97 E-value=3.8e+02 Score=23.44 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 005767 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (678)
Q Consensus 251 e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd 317 (678)
+.|+..+..-=..|..|..|+..|+.....+......|.....-|... -....++|..++..++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e---~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE---RNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh
Confidence 344444444445566666777777777666665555555444444432 2345556666666554
No 189
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.90 E-value=2.6e+02 Score=24.23 Aligned_cols=29 Identities=38% Similarity=0.539 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 005767 261 DEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 261 e~ki~ele~E~~~Lk~~v~e~e~kl~~~e 289 (678)
-.++.+++..+..|+.+++.++.++.+++
T Consensus 39 r~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 39 RAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666677777777776665444
No 190
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=29.87 E-value=7.2e+02 Score=26.61 Aligned_cols=29 Identities=14% Similarity=0.472 Sum_probs=21.1
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhhhccee
Q 005767 197 VEELVGQIDATAKSRNDVREQMEQRNFEI 225 (678)
Q Consensus 197 veel~~Q~da~~k~rn~aReqmeqrny~i 225 (678)
+..++.+++.-.+.|...-+++..+++.|
T Consensus 193 Lr~~l~~l~~lk~eR~~~~~~Lk~~~dDI 221 (339)
T cd09235 193 LRQLMEQVETIKAEREVIESELKSATFDM 221 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 56667777777778887777777776654
No 191
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.78 E-value=2.4e+02 Score=30.19 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHHhHHHHHHH---HHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhh
Q 005767 255 KSLIEKDEKVAEI---ESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV 316 (678)
Q Consensus 255 k~~~eke~ki~el---e~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~v 316 (678)
.-..+|++-+.++ +-+++++++++.+++.....|+..++.| .|-|.++++++.++...|
T Consensus 146 E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l---~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 146 ELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL---PGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHhcccc
Confidence 3344444433333 3366677888888877776666544444 456777777777665443
No 192
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=29.70 E-value=8.6e+02 Score=27.47 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHH
Q 005767 464 LENIVKASQLEIVELRHSVEELRAES-SLLKEHLEAQAKE 502 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~-~~Lq~l~e~QaKe 502 (678)
...++...+..|..|...|.+.+.+. .+++..++.|..+
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e 288 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREE 288 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777776654 3677777777665
No 193
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=29.64 E-value=3.5e+02 Score=28.31 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=24.9
Q ss_pred CchhHHHHhhhchhHHHHHHHhhhhh--hhhhhhHHHHHhhh
Q 005767 181 GLPAVVYGVIKRTNEIVEELVGQIDA--TAKSRNDVREQMEQ 220 (678)
Q Consensus 181 Gl~avaygv~KR~neiveel~~Q~da--~~k~rn~aReqmeq 220 (678)
|..-.-+=||-|+--++.+++.-.+. +-+....++.+.+-
T Consensus 104 Gf~LFL~lvI~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~ 145 (216)
T KOG1962|consen 104 GFVLFLSLVIRRLHTLLRELATLRANEKAMKENEALKKQLEN 145 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhc
Confidence 44444445789999999999877763 33444444444443
No 194
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.61 E-value=2.6e+02 Score=23.77 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 475 IVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (678)
Q Consensus 475 I~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEEr 516 (678)
|.+|.-.+.-.---++.|-..+..|.++|..+..+++.|.+|
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445556666666666666666666666654
No 195
>PRK14141 heat shock protein GrpE; Provisional
Probab=29.51 E-value=3.3e+02 Score=28.14 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=11.3
Q ss_pred HHHHHHhhhhhHHHHH
Q 005767 341 NIRASLAGMESIYQLT 356 (678)
Q Consensus 341 ~l~asl~~~~sI~eLa 356 (678)
.+.....|+++|+..-
T Consensus 112 ~~~~l~eGv~mi~k~l 127 (209)
T PRK14141 112 GLKALIEGVEMTERAM 127 (209)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4666778888888743
No 196
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=29.46 E-value=9.7e+02 Score=28.00 Aligned_cols=116 Identities=22% Similarity=0.298 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch-
Q 005767 510 IEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEA-AAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFK- 587 (678)
Q Consensus 510 IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEa-eAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlK- 587 (678)
--+|+|+..=|...=--+|-.|..+-.-+++= =+ -+|-..+.=+-.+|++|+-|-++-+.-|-.=|.-|+..
T Consensus 346 YadLqEk~~~Ll~~Hr~i~egI~dVKkaAakA------g~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QL 419 (488)
T PF06548_consen 346 YADLQEKHNDLLARHRRIMEGIEDVKKAAAKA------GVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQL 419 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34777777766655445555555443322210 00 02345566677777888877777777666666554432
Q ss_pred HHHHHHHHHHHH------HHHHhhhhhhhhhHHHHHHHHHHHHhHhhhhh
Q 005767 588 EETAAAAMTARD------AAEKSLRLADTRASRLRDRVEELSHQLEEFES 631 (678)
Q Consensus 588 EElAaAAMAAr~------AAEkSLkLAD~RaA~LReRIEELtRQLEE~Es 631 (678)
-.||-|--||-+ =||.+.-+|..|+.-..+--+.+++|++-.-.
T Consensus 420 rDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 420 RDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKR 469 (488)
T ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134444444432 26778888999999999999999999987654
No 197
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.45 E-value=6.9e+02 Score=29.41 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 488 ESSLLKEHLEAQAKELSHRMKRIEELEEKERI 519 (678)
Q Consensus 488 E~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv 519 (678)
-..-|...+..-.+++..-+..++....+..+
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~ 299 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS 299 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444444444444444444444444444433
No 198
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=29.41 E-value=6.9e+02 Score=26.25 Aligned_cols=177 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred chhHHHHHHHhhhhhhhhhhh---HHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 005767 192 RTNEIVEELVGQIDATAKSRN---DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268 (678)
Q Consensus 192 R~neiveel~~Q~da~~k~rn---~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele 268 (678)
|+.+=...+..+..-+.++.+ .++--|+.|+.+--=.+..+|+.++.-+-=...--.-.+...+.|+.+++.+-..+
T Consensus 22 ~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~e 101 (205)
T KOG1003|consen 22 RAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAE 101 (205)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhh
Q 005767 269 SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAG 348 (678)
Q Consensus 269 ~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~~~~~~~lsEs~f~~~etd~ee~l~asl~~ 348 (678)
+-+.---..|.+++..++.+..--+.|.-.=..++.=.+.....|+.+.+ ++ ++.+ .++-..+
T Consensus 102 eraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltd-KL------------kEaE----~rAE~aE 164 (205)
T KOG1003|consen 102 ERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTD-KL------------KEAE----TRAEFAE 164 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HH------------hhhh----hhHHHHH
Q ss_pred hhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhh
Q 005767 349 MESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSK 401 (678)
Q Consensus 349 ~~sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kEn~dI~sLLR~AL~E 401 (678)
+++--|=+++ -+|+..+...+.+..+|...|--++.+
T Consensus 165 -RsVakLeke~---------------DdlE~kl~~~k~ky~~~~~eLD~~~~~ 201 (205)
T KOG1003|consen 165 -RRVAKLEKER---------------DDLEEKLEEAKEKYEEAKKELDETLQE 201 (205)
T ss_pred -HHHHHHcccH---------------HHHHHhhHHHHHHHHHHHHHHHHHHHH
No 199
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=29.40 E-value=9.2e+02 Score=27.73 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=47.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhh
Q 005767 67 AHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIEN 146 (678)
Q Consensus 67 a~ea~~krde~~r~rd~a~r~ke~~~~~~~~~s~el~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~ 146 (678)
+....+.+-+|.||-.-||-||- +| .|.||-..|+|++--| ..+.+++++.-
T Consensus 330 qareaklqaec~rQ~qlaLEEKa-aL-------------rkerd~L~keLeekkr--------------eleql~~q~~v 381 (442)
T PF06637_consen 330 QAREAKLQAECARQTQLALEEKA-AL-------------RKERDSLAKELEEKKR--------------ELEQLKMQLAV 381 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH-------------HHHHHHHHHHHHHHHH--------------HHHHHHHHHHh
Confidence 33445899999999999999984 33 4667777777777333 55667777777
Q ss_pred hhhhhhhhhhhhhcccCCCC
Q 005767 147 SAHMLVTGIEKISGKVSNFK 166 (678)
Q Consensus 147 s~~mL~sg~ekis~k~s~~k 166 (678)
..+-|-+-|. +|..|..
T Consensus 382 ~~saLdtCik---aKsq~~~ 398 (442)
T PF06637_consen 382 KTSALDTCIK---AKSQPMT 398 (442)
T ss_pred hhhHHHHHHH---hccCCCC
Confidence 7777766653 5555543
No 200
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.54 E-value=1.7e+02 Score=25.09 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHhHhhhhh
Q 005767 597 ARDAAEKSLRLADTRASRLRDRVEELSHQLEEFES 631 (678)
Q Consensus 597 Ar~AAEkSLkLAD~RaA~LReRIEELtRQLEE~Es 631 (678)
+.-+++.=|+=|+.|...|...|+.|..++|++-+
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555677899999999999999999998754
No 201
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=28.52 E-value=3.1e+02 Score=32.24 Aligned_cols=63 Identities=32% Similarity=0.414 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 005767 473 LEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWK 542 (678)
Q Consensus 473 lEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWK 542 (678)
.+|.++++-+-..|.+.+.|..|+-.=-+-=-+.+...+|||+|+. ++|....+||+|+.--|
T Consensus 240 sql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA-------E~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 240 SQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA-------ECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhc
Confidence 4566666666666666666666654433333456677789999875 56777888999886544
No 202
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.46 E-value=2.4e+02 Score=25.31 Aligned_cols=44 Identities=30% Similarity=0.245 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 470 ASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEEL 513 (678)
Q Consensus 470 ~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeL 513 (678)
.+..+|..||++|..+-..++-.+..-++=..+=.-+..||..|
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888887777766666655555555666666666
No 203
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.46 E-value=2.3e+02 Score=34.93 Aligned_cols=118 Identities=18% Similarity=0.197 Sum_probs=76.9
Q ss_pred HHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 005767 199 ELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (678)
Q Consensus 199 el~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v 278 (678)
.+.+++--...---.+++|-|---|+.-+|++.|+.-.++||.|+....+..-.| -.++..||..+|++...|+.+.
T Consensus 488 ~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl---~eer~qklk~le~q~s~lkk~l 564 (913)
T KOG0244|consen 488 PLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKL---GEERVQKLKSLETQISLLKKKL 564 (913)
T ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHh---hhHHHHHHHHHHHHHHHHHHhh
Confidence 3444443322233467888888889999999999999999999999888733333 5566788888888888777776
Q ss_pred HHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCC
Q 005767 279 NEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDG 319 (678)
Q Consensus 279 ~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~ 319 (678)
.+--.-++....-........+++-.++..-..++.....+
T Consensus 565 ~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d 605 (913)
T KOG0244|consen 565 SSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKED 605 (913)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66544443333333333444555555666666666555433
No 204
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.16 E-value=7.4e+02 Score=26.23 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005767 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHL--EAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR 540 (678)
Q Consensus 463 alE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~--e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~R 540 (678)
+++-.|+.+..+|.++..-+.+.|.-....+..+ .+=.+++..+...|.-+++|..=+.+-+.+||..++..+.++.-
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~ 128 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIED 128 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666555555444 22345677777777777777777777777777777777776654
Q ss_pred HHHH
Q 005767 541 WKAA 544 (678)
Q Consensus 541 WKeA 544 (678)
-+..
T Consensus 129 l~~~ 132 (239)
T COG1579 129 LKER 132 (239)
T ss_pred HHHH
Confidence 4443
No 205
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=27.82 E-value=3.1e+02 Score=28.70 Aligned_cols=57 Identities=28% Similarity=0.291 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005767 522 ESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLG 585 (678)
Q Consensus 522 enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLK 585 (678)
++||||.--+-.+.-|+--||+++-.|..--+ .+|.-|+.-|..+-+-..+|..+++
T Consensus 1 ~s~EELRq~Ll~TTlELE~~k~~A~EElRk~e-------eqi~~L~~Ll~~a~~ERDEAr~qlq 57 (214)
T PF07795_consen 1 ESMEELRQKLLYTTLELEATKMEANEELRKRE-------EQIAHLKDLLKKAYQERDEAREQLQ 57 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999988865433 3445555556666555555555554
No 206
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=27.57 E-value=7.1e+02 Score=29.16 Aligned_cols=171 Identities=14% Similarity=0.216 Sum_probs=77.7
Q ss_pred CchhhHHHHhhhhhhhhccccccccc---cCCCC---CCCCccccC----CCc--chhhHHhhHHHHHHHHHHHHHHHHH
Q 005767 409 SKTNELFKVAENGLREAGIDFKFSKL---LSDGK---VPVSDDKAN----AME--TEEDEIYNLAGALENIVKASQLEIV 476 (678)
Q Consensus 409 qk~s~llQiAE~GLq~vGfgF~~~~~---~g~g~---~~~S~d~~~----~~~--~ee~Ev~sLAsalE~~mK~~qlEI~ 476 (678)
++-.+.++---.|.-+-|+.++..-. -.++. |..-...|. -+. .++++..--.+.|-.||. .+-+|.
T Consensus 379 ~~~ie~v~~~~~~~~~~~snVi~e~~~~~~edd~nfV~e~d~~~~d~~e~~~d~~~ee~~ldaqG~LVqkIlE-Tkke~e 457 (583)
T KOG3809|consen 379 KKQIETVDSTPQVVVELKSNVISEAPKVETEDDSNFVMENDEEDGDRTERIEDLVDEEDRLDAQGALVQKILE-TKKEIE 457 (583)
T ss_pred hhhhhhhhCCchhhhhhhhhhcccCCCCccccccceeeeccccccchhhhcccchhhhhhhhhhhhHHHHHHH-HHHHHH
Confidence 44566777777777777776663321 12221 100000000 011 133444444556666664 456777
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 005767 477 ELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKA-------AAEQEA 549 (678)
Q Consensus 477 eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKe-------AcElEa 549 (678)
++..+..=--++.+++-+.--+ ++.+.+--|+.|=----=|.-=+.=+--||.|.--|+.+|+- +...|-
T Consensus 458 ~~g~~~~p~e~~a~~~~sa~~~---~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq 534 (583)
T KOG3809|consen 458 DGGGQDQPEESDADKIMSAERE---KMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQ 534 (583)
T ss_pred hcCCCCCCChhhhhhHHHHHHH---HHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 6665543323333332221111 222222223322211110111011112367788889999984 445566
Q ss_pred Hhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005767 550 AAGRA-------VEQEFVAQLSSLKQELEEAKQALSESEKK 583 (678)
Q Consensus 550 eAGka-------veqE~~~qls~LkqELe~~K~aLeesn~K 583 (678)
.+|-. ++.++++.|.--+.++.++|..+.--|.+
T Consensus 535 ~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~r 575 (583)
T KOG3809|consen 535 AATFGASEPLYNILANLQKEINDTKEEISKARGRILNNEKR 575 (583)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66644 45555555555555555555555544443
No 207
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.51 E-value=2.6e+02 Score=24.22 Aligned_cols=7 Identities=0% Similarity=-0.202 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 005767 273 ELRQLVN 279 (678)
Q Consensus 273 ~Lk~~v~ 279 (678)
+.-+.|+
T Consensus 19 fQe~tIe 25 (72)
T PRK02793 19 FQEITIE 25 (72)
T ss_pred HHHHHHH
Confidence 3333333
No 208
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.43 E-value=3.4e+02 Score=23.31 Aligned_cols=52 Identities=31% Similarity=0.371 Sum_probs=32.4
Q ss_pred hhhHHHh---hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 005767 230 SELEATI---SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (678)
Q Consensus 230 SqLEa~i---s~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~ 281 (678)
|.|++-| -.+.+|+-+--+-.-.+++.|.+-+.+..+|+.++..|+..++++
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455544 134455544444455566667777788888888888877777664
No 209
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=27.36 E-value=8.7e+02 Score=26.80 Aligned_cols=142 Identities=24% Similarity=0.289 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHHH
Q 005767 471 SQLEIVELRHSVEELRAESSLLKE-HLEAQAKELSHRMKRIEELEEKERIANESVEGL------MLDIAAAEEEISRWKA 543 (678)
Q Consensus 471 ~qlEI~eLr~sleEsRsE~~~Lq~-l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL------~~dIkaaEeEi~RWKe 543 (678)
+..+...++..|+.+|.+--.|-. |-.+|.-=++.+.+++..|+..-|.+-..++.= -.||.
T Consensus 147 Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~----------- 215 (310)
T PF09755_consen 147 LEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTV----------- 215 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHH-----------
Confidence 344444445555555555444432 333455556666777777776666665554420 11221
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhhH----HHHHHH
Q 005767 544 AAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRAS----RLRDRV 619 (678)
Q Consensus 544 AcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA----~LReRI 619 (678)
| ..-|..--+-+...|..|++|+.++|+-|..+...-. +=|++...=+++++.-..|.- .-.+|.
T Consensus 216 -~---~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~-------~k~~~~~~eek~ireEN~rLqr~L~~E~err 284 (310)
T PF09755_consen 216 -N---VSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHS-------EKMAQYLQEEKEIREENRRLQRKLQREVERR 284 (310)
T ss_pred -h---hcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222222344777789999999999999987765542 335555555788887777654 346789
Q ss_pred HHHHHhHhhhhhhcc
Q 005767 620 EELSHQLEEFESRED 634 (678)
Q Consensus 620 EELtRQLEE~Esre~ 634 (678)
|.|.|++-+.|+.-.
T Consensus 285 eal~R~lsesEsslE 299 (310)
T PF09755_consen 285 EALCRHLSESESSLE 299 (310)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987543
No 210
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=27.35 E-value=2.1e+02 Score=31.72 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=38.0
Q ss_pred hhhHHHHHhhhhcceeee-eehhhHHHhhhchHHHhhhhhhHHHHHHHHHH--hHH-HHHHHHHhHHHHHHHHHHHHHHh
Q 005767 210 SRNDVREQMEQRNFEIAI-EVSELEATISGLREEVAKKSSFIENLEKSLIE--KDE-KVAEIESQGLELRQLVNEYEDKL 285 (678)
Q Consensus 210 ~rn~aReqmeqrny~iAI-EVSqLEa~is~lr~eva~k~s~~e~l~k~~~e--ke~-ki~ele~E~~~Lk~~v~e~e~kl 285 (678)
..+..++.+..|||..-| +|.+|......+..++..--+..-.++|++.. +.. ...++-.++..|++.+..++.++
T Consensus 10 n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 89 (425)
T PRK05431 10 NPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAEL 89 (425)
T ss_pred CHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888764211 12223332222222222222222333333322 111 23345556667777777777777
Q ss_pred hchhh
Q 005767 286 KNLES 290 (678)
Q Consensus 286 ~~~e~ 290 (678)
+.+++
T Consensus 90 ~~~~~ 94 (425)
T PRK05431 90 DELEA 94 (425)
T ss_pred HHHHH
Confidence 65553
No 211
>PRK02119 hypothetical protein; Provisional
Probab=27.31 E-value=2.5e+02 Score=24.42 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 005767 273 ELRQLVNEY 281 (678)
Q Consensus 273 ~Lk~~v~e~ 281 (678)
+.-+.|++|
T Consensus 20 ~QE~tie~L 28 (73)
T PRK02119 20 FQENLLEEL 28 (73)
T ss_pred HHHHHHHHH
Confidence 333333333
No 212
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.07 E-value=4.2e+02 Score=22.97 Aligned_cols=53 Identities=28% Similarity=0.347 Sum_probs=37.2
Q ss_pred HHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhHhhh
Q 005767 577 LSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEF 629 (678)
Q Consensus 577 Leesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA~LReRIEELtRQLEE~ 629 (678)
|..+..|+.--+..=..=..=|+.|..+|..|=.....|+..++.|.++|++.
T Consensus 14 Ld~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 14 LDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344333333333344688888999999999999999999999998764
No 213
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=27.06 E-value=8.7e+02 Score=26.70 Aligned_cols=111 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHH----------HHHHhhhhhH
Q 005767 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELS------------HRMKRIEELEE----------KERIANESVE 525 (678)
Q Consensus 468 mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa------------~~~~~IkeLEE----------rErv~~enVE 525 (678)
...++.++..+..++...+.+...++.+.+.-.+.+. .+..+++.++. ...-+..++.
T Consensus 167 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (457)
T TIGR01000 167 NEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQID 246 (457)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 526 GLMLDIAAAEEEIS----------------RWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALS 578 (678)
Q Consensus 526 eL~~dIkaaEeEi~----------------RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLe 578 (678)
.+-.+|.+++..+. |....-......-..-+.+...++..++..|..++..+.
T Consensus 247 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 247 QLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 214
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=26.63 E-value=7.5e+02 Score=25.76 Aligned_cols=107 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----
Q 005767 473 LEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQ----- 547 (678)
Q Consensus 473 lEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcEl----- 547 (678)
.||..|+++|-++|+........+..=-..+......++..+..=.=...-.+-|--.+...+.|+..-|.++..
T Consensus 31 ~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~ 110 (202)
T PF06818_consen 31 SEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLK 110 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccch
Q ss_pred ----------HHHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 548 ----------EAAAGRAV----EQEFVAQLSSLKQELEEAKQALSE 579 (678)
Q Consensus 548 ----------EaeAGkav----eqE~~~qls~LkqELe~~K~aLee 579 (678)
++.+.+.. ...+..++.-|+.||...++..+.
T Consensus 111 ~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~ 156 (202)
T PF06818_consen 111 RQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREE 156 (202)
T ss_pred hhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHH
No 215
>PF14992 TMCO5: TMCO5 family
Probab=26.49 E-value=5e+02 Score=28.20 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 005767 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWK 542 (678)
Q Consensus 463 alE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWK 542 (678)
+-|.++-++..||+...|.++++ +-+-..++..-..+-+...+..-||..-..+++||.+|=..+.+-+ |.
T Consensus 29 ~~E~~iq~Le~Eit~~~~~~~~~----e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~-----~~ 99 (280)
T PF14992_consen 29 EKEGAIQSLEREITKMDHIADRS----EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQE-----TN 99 (280)
T ss_pred HHHHHHHHHHHHHHHHccccCch----hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhcccc-----CC
Confidence 45778888899999999999987 3445555666666888888899999999999999999987765433 23
Q ss_pred HHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhh
Q 005767 543 AAAEQEAAAGR-----AVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLA 608 (678)
Q Consensus 543 eAcElEaeAGk-----aveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLA 608 (678)
..||.+..-+. ...|-....+..++.++.++.. +.+--++.--+||.-..+|=
T Consensus 100 ~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~-------------d~~~v~~l~eDq~~~i~klk 157 (280)
T PF14992_consen 100 VQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVED-------------DYQQVHQLCEDQANEIKKLK 157 (280)
T ss_pred CCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 44555543332 2233333334444555544433 44445555556665555543
No 216
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=26.42 E-value=4.3e+02 Score=29.45 Aligned_cols=76 Identities=28% Similarity=0.299 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhhHHHHHHHHHHH
Q 005767 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIAN------------ESVEGLMLDIAAAE 535 (678)
Q Consensus 468 mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~------------enVEeL~~dIkaaE 535 (678)
+..+|+...+|..+++=--.|--.|-+.---..-++.+++.-|.|||| .||+ .-|-+|.-+-+-.|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEE--aiLagGaaaNavrdYqrq~~elneEkrtLe 79 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEE--AILAGGAAANAVRDYQRQVQELNEEKRTLE 79 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788889999999888777777776666666777888888888884 3443 22677777777888
Q ss_pred HHHHHHHHHH
Q 005767 536 EEISRWKAAA 545 (678)
Q Consensus 536 eEi~RWKeAc 545 (678)
.|++|=|+-+
T Consensus 80 RELARaKV~a 89 (351)
T PF07058_consen 80 RELARAKVSA 89 (351)
T ss_pred HHHHHhhhhh
Confidence 8888877654
No 217
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=25.98 E-value=2.6e+02 Score=30.09 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=0.0
Q ss_pred hHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHH
Q 005767 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK 304 (678)
Q Consensus 232 LEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ 304 (678)
.+.-....+..+.....+.+.+...+..+++++. +++++|.++-++|.+++..+--|.+.++++..
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~-------e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~s 256 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVK-------EIKERITEMKGRLGELEMESTRLSKTIKSIKS 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 218
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.95 E-value=1.2e+03 Score=28.09 Aligned_cols=78 Identities=23% Similarity=0.240 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHhhh--------------------
Q 005767 470 ASQLEIVELRHSVEELRAESSLLKEHLE-----AQAKELS--HRMKRIEELEEKERIANE-------------------- 522 (678)
Q Consensus 470 ~~qlEI~eLr~sleEsRsE~~~Lq~l~e-----~QaKeIa--~~~~~IkeLEErErv~~e-------------------- 522 (678)
.++.+..++||-|..-++|-++|-.... .++-++. .....||++-.||.-+-+
T Consensus 111 eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR 190 (772)
T KOG0999|consen 111 ELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR 190 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 3566777777777777777776644322 2222222 234457777666643321
Q ss_pred -h---hHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 523 -S---VEGLMLDIAAAEEEISRWKAAAEQ 547 (678)
Q Consensus 523 -n---VEeL~~dIkaaEeEi~RWKeAcEl 547 (678)
| .|||--+|+-.|+|+-=...+++.
T Consensus 191 ~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 191 QSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 578888888888887766666553
No 219
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.95 E-value=2.1e+02 Score=25.65 Aligned_cols=27 Identities=41% Similarity=0.492 Sum_probs=12.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhchh
Q 005767 263 KVAEIESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 263 ki~ele~E~~~Lk~~v~e~e~kl~~~e 289 (678)
+|..++..|..|-+.+..+|.+.+.+|
T Consensus 67 ~Id~Ie~~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 67 QIDQIEEQVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 220
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=25.81 E-value=1.2e+02 Score=35.99 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=42.5
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 005767 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQ 276 (678)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~ 276 (678)
|++|+-+|++...|+..+-++++.|.++++..+..|+.|..|+..++-
T Consensus 26 v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 26 VPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 789999999999999999999999999999999999988886655554
No 221
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=25.51 E-value=5.4e+02 Score=28.36 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=59.6
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH-------HHHHHhhchhhhchhhHHhhhh
Q 005767 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVN-------EYEDKLKNLESHRPLLVDQLNY 301 (678)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~-------e~e~kl~~~e~~r~lL~dql~~ 301 (678)
+.-|+--+-..|+-+..|+-..|.+.+.++.....+.+++.-...-++++. +++..|-.+.+.+-+|..||+-
T Consensus 160 ~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 160 FNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888999999999999999999999999999984444444444 4555566666778888888876
Q ss_pred HHHHHHH
Q 005767 302 VSKIHDQ 308 (678)
Q Consensus 302 v~~ihd~ 308 (678)
+-+--+.
T Consensus 240 A~~K~~~ 246 (305)
T PF14915_consen 240 AHNKADN 246 (305)
T ss_pred HHHHHHH
Confidence 5544333
No 222
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=25.41 E-value=8.2e+02 Score=25.82 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005767 27 FSVERFREVLAELNRERQAREAAENSA 53 (678)
Q Consensus 27 ~s~~~~~~l~ael~~er~~r~aae~s~ 53 (678)
..+..++.++.+|+.-+..|..-+..+
T Consensus 190 ~~v~~Lr~~l~~l~~lk~eR~~~~~~l 216 (342)
T cd08915 190 EVVSSLRPLLNEVSELEKERERFISEL 216 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999888888776655
No 223
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.27 E-value=7.1e+02 Score=25.03 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 005767 250 IENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 250 ~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e 289 (678)
..-+++.+.--.++|.+++.++.+++++.--+-+.+.|+.
T Consensus 14 ~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 14 NDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666677766666666555554
No 224
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.97 E-value=1.1e+03 Score=27.25 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=30.3
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 005767 453 EEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHL 496 (678)
Q Consensus 453 ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~ 496 (678)
...++..+...+.++....+..+.+|...+.+...+...+..-+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 371 SGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777777888888888777777776666544
No 225
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.49 E-value=1.3e+03 Score=27.81 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-----
Q 005767 460 LAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAA----- 534 (678)
Q Consensus 460 LAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaa----- 534 (678)
....+++=++.++.++.+-.+.|.+.+.+..-|+. -++.|++ +|++..++...+.+.++.++.-....
T Consensus 559 ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~----~ae~Lae---R~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS 631 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQKEQQLKELQELQEERKSLRE----SAEKLAE---RYEEAKDKQEKLMKRVDRVLQLLNSQLPVLS 631 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 35556666666777666666666666666555543 3445554 56777777777888888777665431
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 005767 535 EEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFK 587 (678)
Q Consensus 535 EeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlK 587 (678)
+.| ..|+. |++.=+..++-+...|..+|..++..+..+. +..+.+.|
T Consensus 632 ~AE-r~~~~----EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~~~~~~ 678 (717)
T PF10168_consen 632 EAE-REFKK----ELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQKSPKKK 678 (717)
T ss_pred HHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCC
Confidence 222 44543 3333333356666667777777766655555 44444444
No 226
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.31 E-value=2.3e+02 Score=32.67 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (678)
Q Consensus 468 mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLE 514 (678)
+...|....+|+..|+..|.|...|.........+|.++...|+.|+
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 44556677777777777776666555555544444444444444444
No 227
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.66 E-value=6.1e+02 Score=23.72 Aligned_cols=91 Identities=18% Similarity=0.321 Sum_probs=68.4
Q ss_pred HhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 005767 457 IYNLAGALENIVKASQLEI---VELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAA 533 (678)
Q Consensus 457 v~sLAsalE~~mK~~qlEI---~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIka 533 (678)
+..+.++|-..+..-+-.. ..|-..+..+++|..+|+...+.=-.+++.....+.-++.+++-+...+..+...++.
T Consensus 33 ~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 33 DVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554333222 2344555667889999988888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005767 534 AEEEISRWKAAAEQ 547 (678)
Q Consensus 534 aEeEi~RWKeAcEl 547 (678)
.-+|+.|=+..+..
T Consensus 113 ~kee~~klk~~~~~ 126 (151)
T PF11559_consen 113 EKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988876654
No 228
>PRK04325 hypothetical protein; Provisional
Probab=23.51 E-value=3.4e+02 Score=23.61 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=5.0
Q ss_pred HHHHHHHHhHHHHH
Q 005767 252 NLEKSLIEKDEKVA 265 (678)
Q Consensus 252 ~l~k~~~eke~ki~ 265 (678)
.|.+-++.-...|.
T Consensus 27 ~LN~vv~~Qq~~I~ 40 (74)
T PRK04325 27 GLNATVARQQQTLD 40 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 229
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.46 E-value=6.1e+02 Score=23.63 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005767 500 AKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELE 571 (678)
Q Consensus 500 aKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe 571 (678)
.+.|........++...-.-+...++.....+...+.-..-=|...+.|+.--+.=+.+++.|=..|+..|+
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444444444443333556666666666666666666666666654
No 230
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.46 E-value=7.4e+02 Score=24.65 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 005767 241 EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (678)
Q Consensus 241 ~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd 317 (678)
.|+..+-..+..+++.+..++..+. +....|.++-..++.+-+.+..+...|-+.-.-+..++.....-+..+.
T Consensus 71 ~E~~~~~~el~~~E~rl~~rE~~L~---~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iA 144 (201)
T PF12072_consen 71 RELKERRKELQRLEKRLQQREEQLD---RRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555566666665554443 2233444444444444444444444454444444554444444444444
No 231
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.42 E-value=6.2e+02 Score=23.73 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005767 474 EIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 474 EI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeA 544 (678)
+...++..+...+....+|+.--.....+|......|.++|....-+...++.+...+ ..|+.||...
T Consensus 118 ~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~---~~El~~f~~~ 185 (218)
T cd07596 118 TLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERL---KEELKRFHEE 185 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3344455566666666666543333446777888888888877777777776665544 4788888643
No 232
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.38 E-value=2.9e+02 Score=27.57 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=43.3
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHh-HHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 005767 229 VSELEATISGLREEVAKKSSFIENLEKSLIEK-DEKVAEIESQGLELRQLVNEYEDKLKN 287 (678)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~ek-e~ki~ele~E~~~Lk~~v~e~e~kl~~ 287 (678)
+++|+..+..|...++.=...++.+++...+. .........|+.+||..+..+...|+.
T Consensus 129 i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 129 IEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688888888888888888888888776653 333444455888999888888777743
No 233
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=23.28 E-value=5.3e+02 Score=22.90 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=43.8
Q ss_pred hhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccC--chh-----------HHHHhhhchhHHHHHH
Q 005767 134 TKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTG--LPA-----------VVYGVIKRTNEIVEEL 200 (678)
Q Consensus 134 ~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtG--l~a-----------vaygv~KR~neiveel 200 (678)
.+..-..-.++.++.+-+..++.+++...++..+. +|+..-.+.| +.. +--.|+.-....++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~ 92 (194)
T cd07307 16 TKKLLDSLKELPAAAEKLSEALQELGKELPDLSNT---DLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKD 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344457788888889999888766554331 2232211211 111 1222334444444455
Q ss_pred HhhhhhhhhhhhHHHHHhh
Q 005767 201 VGQIDATAKSRNDVREQME 219 (678)
Q Consensus 201 ~~Q~da~~k~rn~aReqme 219 (678)
++++..+.|.++.+|..++
T Consensus 93 ~~~~~~~~k~~~~~~~~yd 111 (194)
T cd07307 93 LKEIKKRRKKLDKARLDYD 111 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666677777666644
No 234
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.99 E-value=9.5e+02 Score=25.71 Aligned_cols=90 Identities=29% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005767 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 465 E~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeA 544 (678)
...+..++.++..++..|++...+++.|-..+..+..+..+....+...| ..+.....||..=+..
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee--------------~~~~~~~~ei~~~~~~ 79 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEE--------------EEAEKQAKEIEEIKEE 79 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--------------HHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Q 005767 545 AEQEAAAGRAVEQEFVAQLSSLKQ 568 (678)
Q Consensus 545 cElEaeAGkaveqE~~~qls~Lkq 568 (678)
|+.+.+...-+..+-...|..|+.
T Consensus 80 a~~~L~~a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 80 AEEELAEAEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCH
No 235
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.99 E-value=1.7e+03 Score=28.65 Aligned_cols=70 Identities=23% Similarity=0.353 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005767 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 468 mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeA 544 (678)
++.++.+..+|+.+|++.|.+ ++.+.++|.+..-.++.+|..-.-+-.+++.|..++..+-.|..+--+.
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~-------i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s 742 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNE-------IEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQES 742 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444555566666666666555 4578899999999999999999999999999999999988888775544
No 236
>PRK01156 chromosome segregation protein; Provisional
Probab=22.97 E-value=1.3e+03 Score=27.38 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhHhhh
Q 005767 615 LRDRVEELSHQLEEF 629 (678)
Q Consensus 615 LReRIEELtRQLEE~ 629 (678)
|..+++.+++++++.
T Consensus 714 l~eel~~~~~~~~~l 728 (895)
T PRK01156 714 LSDRINDINETLESM 728 (895)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 237
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.74 E-value=3.8e+02 Score=22.69 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 470 ASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (678)
Q Consensus 470 ~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEE 515 (678)
..+.++......++...-+...|....+.+.++|..+..+|+++++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666777777777777777776664
No 238
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=22.54 E-value=1.6e+03 Score=28.34 Aligned_cols=234 Identities=19% Similarity=0.254 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH----hHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc-c---chhHHH
Q 005767 31 RFREVLAELNRERQAREAAENSA----TELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSN-D---KLSTEI 102 (678)
Q Consensus 31 ~~~~l~ael~~er~~r~aae~s~----~e~~~~~~rlkala~ea~~krde~~r~rd~a~r~ke~~~~~~-~---~~s~el 102 (678)
++..+.-|+..=..++.+++.-+ .+++..-.||--+.++.--||||..+-=+ +|+.|-+.|-.. . .+..+.
T Consensus 114 ~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~-~L~nk~~~lt~~~~q~~tkl~e~ 192 (1265)
T KOG0976|consen 114 KCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE-DLHDKNEELNEFNMEFQTKLAEA 192 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH-HHhhhhhHHhHHHHHHHHHHHHH
Confidence 33444444444444555665544 44555555666666666667777666544 477766655432 1 233455
Q ss_pred HHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCc
Q 005767 103 AEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGL 182 (678)
Q Consensus 103 ~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl 182 (678)
...|++-.+..+||++.+..-|. +|++ .++ .+-+..+|-.--.-|.+-++-++
T Consensus 193 ~~en~~le~k~~k~~e~~~~nD~-~sle--~~~-~q~~tq~vl~ev~QLss~~q~lt----------------------- 245 (1265)
T KOG0976|consen 193 NREKKALEEKLEKFKEDLIEKDQ-KSLE--LHK-DQENTQKVLKEVMQLSSQKQTLT----------------------- 245 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhcchH-HHHH--HHH-HHHHHHHHHHHHHHHHHhHhhhh-----------------------
Confidence 57788888999999998875443 1111 000 11122222222222222221111
Q ss_pred hhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHh--
Q 005767 183 PAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK-- 260 (678)
Q Consensus 183 ~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~ek-- 260 (678)
+ ++-|--.++|..--..+.+|-=.+--.|.+-.|--..=|.||-|--+--+.+++. .+.++.+.-
T Consensus 246 -p-----~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd-------~lkqt~t~a~g 312 (1265)
T KOG0976|consen 246 -P-----LRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELD-------TLKQTRTRADG 312 (1265)
T ss_pred -h-----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHhhc
Confidence 1 1122223333333344444443444444444555555566666666544444432 222222211
Q ss_pred ----------------HHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHH
Q 005767 261 ----------------DEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKI 305 (678)
Q Consensus 261 ----------------e~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~i 305 (678)
-..++.+.-...+.|-++..+++|+.+||.+|.++....-.+...
T Consensus 313 dseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~ 373 (1265)
T KOG0976|consen 313 DSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEK 373 (1265)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 234455555777777788888888888887777766544433333
No 239
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.53 E-value=1.5e+03 Score=27.72 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--chHH--------HHHHHHHHHHHHHH
Q 005767 534 AEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLG--FKEE--------TAAAAMTARDAAEK 603 (678)
Q Consensus 534 aEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLK--lKEE--------lAaAAMAAr~AAEk 603 (678)
+++...+-++.| -|---++.+-......+..++--++..+..+.+..+||+ .+-| .+++.+....--..
T Consensus 345 ~~~~~~~~~~~~-~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~ 423 (698)
T KOG0978|consen 345 AKKLKILLREKD-RESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQ 423 (698)
T ss_pred HHHHHhHHHHHH-HHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444333 344444555555555555577777777777777777776 2212 12222222222234
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhHhhhh
Q 005767 604 SLRLADTRASRLRDRVEELSHQLEEFE 630 (678)
Q Consensus 604 SLkLAD~RaA~LReRIEELtRQLEE~E 630 (678)
.+.++-+|+..+-.-+++|.+..+.+.
T Consensus 424 ~~d~~~r~~~~~~~~~e~Lqk~~~~~k 450 (698)
T KOG0978|consen 424 ALDDAERQIRQVEELSEELQKKEKNFK 450 (698)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 577777888888888888888877665
No 240
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=22.50 E-value=5.9e+02 Score=29.81 Aligned_cols=126 Identities=16% Similarity=0.043 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 470 ASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEA 549 (678)
Q Consensus 470 ~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEa 549 (678)
.++-|+.++||-++=++.|+.++|.+.-.=--+|...+.+|-+|+. -+-..|.--=.+++-|+
T Consensus 306 as~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s----------~~~~q~~~~h~~ka~~~------- 368 (554)
T KOG4677|consen 306 ASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLES----------AGQTQIFRKHPRKASIL------- 368 (554)
T ss_pred hHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HhHHHHHHhhhHhhhhh-------
Confidence 4678899999999999999999987654433344444444444442 23334444445555554
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch-----HHHHHHHHHHH-HHHHHhhhhhhhhhHHHH
Q 005767 550 AAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFK-----EETAAAAMTAR-DAAEKSLRLADTRASRLR 616 (678)
Q Consensus 550 eAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlK-----EElAaAAMAAr-~AAEkSLkLAD~RaA~LR 616 (678)
+-+.+++..+.-+++|-+-.++.|-.-+.|+++| +|+-+.|--++ -|=.-|-+--|.|...|-
T Consensus 369 ----~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt 437 (554)
T KOG4677|consen 369 ----NMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLT 437 (554)
T ss_pred ----hchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHH
Confidence 4567777778888999999999999999998887 45544332222 122234555556665553
No 241
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.14 E-value=3.6e+02 Score=23.74 Aligned_cols=69 Identities=32% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005767 463 ALENIVKASQLEIVELRHSVEELRAESSLLKE---HLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDI 531 (678)
Q Consensus 463 alE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~---l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dI 531 (678)
.+..-.+.++.++.+||+.--....+++.++. -.+.--.+.......|++||....-+.+.+..++..|
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 242
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=21.94 E-value=1.1e+03 Score=26.02 Aligned_cols=115 Identities=17% Similarity=0.296 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHH----HHHHHHHHHHHH-HHHHhhhhhcchHHHHHH
Q 005767 523 SVEGLMLDIAAAEEEISRWKAAAEQEAAAGR----AVEQEFVAQL----SSLKQELEEAKQ-ALSESEKKLGFKEETAAA 593 (678)
Q Consensus 523 nVEeL~~dIkaaEeEi~RWKeAcElEaeAGk----aveqE~~~ql----s~LkqELe~~K~-aLeesn~KLKlKEElAaA 593 (678)
|+|--+.|+---=-=++|+|+-.+.|+.+-- ..-.|++.+| ..|--|++++|+ ||++...--+==|+
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAee---- 229 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEE---- 229 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4555555555555557889998888888763 3345666666 567789999986 77777766553333
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHH--HhHhhhhhhccccCCCCCceeecccccc
Q 005767 594 AMTARDAAEKSLRLADTRASRLRDRVEELS--HQLEEFESREDSRGRNRPRYVCWPWQWL 651 (678)
Q Consensus 594 AMAAr~AAEkSLkLAD~RaA~LReRIEELt--RQLEE~Esre~~~~r~~~RyvCWPWq~L 651 (678)
=+.=++.+-++++.--++||--|-... |+..|.= .+-.||.|=|=+.+
T Consensus 230 ---Lkrltd~A~~MsE~Ql~ELRadIK~fvs~rk~de~l-------g~~~rf~~d~~~l~ 279 (302)
T PF07139_consen 230 ---LKRLTDRASQMSEEQLAELRADIKHFVSERKYDEEL-------GRAARFTCDPEQLK 279 (302)
T ss_pred ---HHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhHHHH-------hHhhhcccCHHHHH
Confidence 355567777888887788887776654 3333322 22478888776544
No 243
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.85 E-value=5.1e+02 Score=24.59 Aligned_cols=13 Identities=23% Similarity=0.721 Sum_probs=6.0
Q ss_pred HHHHHhhhhhHHH
Q 005767 342 IRASLAGMESIYQ 354 (678)
Q Consensus 342 l~asl~~~~sI~e 354 (678)
|+.-+..+|.+|.
T Consensus 101 L~~Dv~DlK~myr 113 (120)
T PF12325_consen 101 LRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 4444445555443
No 244
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=21.82 E-value=7.4e+02 Score=25.92 Aligned_cols=107 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHH-----
Q 005767 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKI----- 305 (678)
Q Consensus 231 qLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~i----- 305 (678)
.|++.+++.+...+..---+|+...+.-+.+..-.++..+.+-|++.+..+-..+.++..-.|-.++-+.-..+.
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaa 164 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAA 164 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHhhh-cCCCccccccccccCCCccch
Q 005767 306 ---HDQVDDIIKIV-DDGNLDQSGLSESLFLPQETD 337 (678)
Q Consensus 306 ---hd~L~~vi~~v-d~~~~~~~~lsEs~f~~~etd 337 (678)
-|.+.-+++-+ ..=.++...+-.++=.|+..|
T Consensus 165 nrwtDnI~il~dy~~rkf~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 165 NRWTDNIFILIDYLYRKFGLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred hhhhhhHHHHHHHHHHhcCCCHHHHhHhcCCCcccc
No 245
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.35 E-value=2.4e+02 Score=24.71 Aligned_cols=55 Identities=20% Similarity=0.468 Sum_probs=41.6
Q ss_pred eeehhhHHHhhhchHHHhhhhhhHHH---HHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 005767 227 IEVSELEATISGLREEVAKKSSFIEN---LEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (678)
Q Consensus 227 IEVSqLEa~is~lr~eva~k~s~~e~---l~k~~~eke~ki~ele~E~~~Lk~~v~e~ 281 (678)
++.-.++.+++.||--+.+--+.+.+ +.+++.+-+.+|..++.++...++.+..|
T Consensus 21 ~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 21 LSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888887776666666 78888888888887777777666666665
No 246
>PRK01156 chromosome segregation protein; Provisional
Probab=21.09 E-value=1.4e+03 Score=27.10 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=7.2
Q ss_pred hhhhhhhhhHhhhh
Q 005767 133 VTKAKDGLRSEIEN 146 (678)
Q Consensus 133 ~~~~~~~l~~ei~~ 146 (678)
..+-.+.|.++|+.
T Consensus 421 l~~~i~~l~~~i~~ 434 (895)
T PRK01156 421 ISSKVSSLNQRIRA 434 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 33345556665554
No 247
>PRK11519 tyrosine kinase; Provisional
Probab=21.03 E-value=1.2e+03 Score=27.51 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=25.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005767 481 SVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIA 520 (678)
Q Consensus 481 sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~ 520 (678)
..+..+.-..-|...+....+++..-+..+++...+..++
T Consensus 261 k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~v 300 (719)
T PRK11519 261 KSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV 300 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344455556666666666677777777777766666554
No 248
>PLN02320 seryl-tRNA synthetase
Probab=20.90 E-value=3.8e+02 Score=31.03 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=42.8
Q ss_pred hhhhHHHHHhhhhcceeeeeehhh---HHHhhhchHHHhhhhhhHHHHHHHHHHh--HHHHHHHHHhHHHHHHHHHHHHH
Q 005767 209 KSRNDVREQMEQRNFEIAIEVSEL---EATISGLREEVAKKSSFIENLEKSLIEK--DEKVAEIESQGLELRQLVNEYED 283 (678)
Q Consensus 209 k~rn~aReqmeqrny~iAIEVSqL---Ea~is~lr~eva~k~s~~e~l~k~~~ek--e~ki~ele~E~~~Lk~~v~e~e~ 283 (678)
...+..++.+..|||.+. |.++ ....-.+..++..--+.-..+.|++..+ .....++-.++..|++.+..+|.
T Consensus 74 ~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~ 151 (502)
T PLN02320 74 DNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEE 151 (502)
T ss_pred hCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356678888899998643 3332 2222222223333333333334444332 12344555677788888888877
Q ss_pred Hhhchhh
Q 005767 284 KLKNLES 290 (678)
Q Consensus 284 kl~~~e~ 290 (678)
.++.+++
T Consensus 152 ~~~~~~~ 158 (502)
T PLN02320 152 DLVKLTD 158 (502)
T ss_pred HHHHHHH
Confidence 7766653
No 249
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.76 E-value=3.5e+02 Score=22.96 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005767 250 IENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (678)
Q Consensus 250 ~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e 280 (678)
++.|..-+..-...|..|++.+..|.+++.+
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333333
No 250
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.73 E-value=1.9e+02 Score=26.32 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 005767 467 IVKASQLEIVELRHSVEELRAESSLLKEHLE 497 (678)
Q Consensus 467 ~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e 497 (678)
.++.++.+|.+|+..+..++.|.+-|++.+.
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999999999999999998764
No 251
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.55 E-value=9.7e+02 Score=24.93 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=17.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005767 548 EAAAGRAVEQEFVAQLSSLKQELEEAKQALSES 580 (678)
Q Consensus 548 EaeAGkaveqE~~~qls~LkqELe~~K~aLees 580 (678)
++...+.-......++..++.++..++..+...
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 236 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDELQLERQQI 236 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555566666666555543
No 252
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=20.53 E-value=3e+02 Score=30.37 Aligned_cols=136 Identities=26% Similarity=0.250 Sum_probs=81.5
Q ss_pred CCCCCCCccccCch-----------hHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHH-hh
Q 005767 170 AGGLPRSQKYTGLP-----------AVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEAT-IS 237 (678)
Q Consensus 170 ~~~lP~SqKYtGl~-----------avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~-is 237 (678)
+-++|++.+|.-+. ....+-|+++-+.|..+=.+-++..|...-+++ +-.++|+--+||+-++-. +.
T Consensus 140 ~~~~~~~~~~~k~~~~~~~~~~~~~~~v~~~~~~~~~l~~a~~s~~~~~~k~~~~~~~-~i~~~~~e~~e~~~~~k~~~~ 218 (325)
T KOG2669|consen 140 AKKLPRGSKQIKLDEKGSKPGLSSLGEVHEKIDSSVELVRALQSLENAASKLDAVLEE-RIARLPQEVEEVSSLEKITLN 218 (325)
T ss_pred hhccccchHhhhhhhhccCCCCCCccccchhHHhHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHhhhH
Confidence 44566665554333 344566778889999988888888888877765 556888888999988864 66
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH----hHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 005767 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIES----QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (678)
Q Consensus 238 ~lr~eva~k~s~~e~l~k~~~eke~ki~ele~----E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~v~~ihd~L 309 (678)
-+.+++++...+.+.+ +.+-..+++.... =+..|++...+-...+.+.+.+-+...++++-+.-+.+.+
T Consensus 219 ~~~e~~~k~lee~~~l---L~e~~~~L~s~~~~~~~~~~~l~d~l~~q~~~l~~~~~~~~~~k~~l~~~~n~~~~~ 291 (325)
T KOG2669|consen 219 SLIESLAKHLEEEEML---LREVNPRLAAEEESRRQLVSMLRDALREQKEELNDEEPQLEEYKEKLDKAQNVQKEL 291 (325)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhcccchhhhhhHHHHHHHHhhhhccccccccCchhhhhhHHHHhhhhhhh
Confidence 6667777777766666 4444444443222 2334444444333334444444445555554333333333
No 253
>PF15456 Uds1: Up-regulated During Septation
Probab=20.52 E-value=3.5e+02 Score=25.77 Aligned_cols=71 Identities=24% Similarity=0.304 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchHHH--HHHHHHHHHHHHH--------hhhhhhhhhHHHHHHHHHHHHhHhhhhhh
Q 005767 563 LSSLKQELEEAKQALSESEKKLGFKEET--AAAAMTARDAAEK--------SLRLADTRASRLRDRVEELSHQLEEFESR 632 (678)
Q Consensus 563 ls~LkqELe~~K~aLeesn~KLKlKEEl--AaAAMAAr~AAEk--------SLkLAD~RaA~LReRIEELtRQLEE~Esr 632 (678)
|..||+|+.-+-.-++-+..||.+-=.+ ||..|+.--...+ ++.=+|.==+.+-.+|+++..+|+..+++
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R 103 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENR 103 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3555666666666666555555443222 4444433211111 23334444456677888888888888877
Q ss_pred c
Q 005767 633 E 633 (678)
Q Consensus 633 e 633 (678)
.
T Consensus 104 ~ 104 (124)
T PF15456_consen 104 L 104 (124)
T ss_pred H
Confidence 5
No 254
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.43 E-value=8.5e+02 Score=27.61 Aligned_cols=85 Identities=22% Similarity=0.274 Sum_probs=61.5
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh-chhhhchhhHHhh----hhHH
Q 005767 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLK-NLESHRPLLVDQL----NYVS 303 (678)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~-~~e~~r~lL~dql----~~v~ 303 (678)
..+||..|..+++|-..----.+++.....||+.+-..|.+|..+..-....|-++-+ .+-.|+.+|-.-= ++=+
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEs 208 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLES 208 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Confidence 3579999999999988888889999999999999999999988887776666644332 2336666665522 2345
Q ss_pred HHHHHHHHHH
Q 005767 304 KIHDQVDDII 313 (678)
Q Consensus 304 ~ihd~L~~vi 313 (678)
||.|-+++|-
T Consensus 209 KVqDLm~Eir 218 (401)
T PF06785_consen 209 KVQDLMYEIR 218 (401)
T ss_pred HHHHHHHHHH
Confidence 6666544443
No 255
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=20.38 E-value=6.2e+02 Score=26.57 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCCCccccCchhHHH
Q 005767 163 SNFKNFSAGGLPRSQKYTGLPAVVY 187 (678)
Q Consensus 163 s~~k~f~~~~lP~SqKYtGl~avay 187 (678)
++|.+|.+.+-|.-++-.|..+|.+
T Consensus 99 s~~~~~~~~~~~~~~~~~~~~~v~~ 123 (214)
T PF07795_consen 99 SPFSNFNPLPQQQQQQVDPADAVLE 123 (214)
T ss_pred CcccccCccccccccccChHHHHHH
Confidence 4445664444445555556666643
No 256
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=20.33 E-value=1.6e+03 Score=27.46 Aligned_cols=140 Identities=26% Similarity=0.306 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 469 KASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQE 548 (678)
Q Consensus 469 K~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElE 548 (678)
+.++..+.++...|++++++...++..-..=.-+|..-...++.|+-|=..+-..++.|..-|...|.||.-=|--|+.
T Consensus 620 E~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e- 698 (769)
T PF05911_consen 620 ESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEE- 698 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh-
Confidence 4556677777777777777777666554444444444555666777776666677888888888888887765555443
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH--HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhH
Q 005767 549 AAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKE--ETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQL 626 (678)
Q Consensus 549 aeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKE--ElAaAAMAAr~AAEkSLkLAD~RaA~LReRIEELtRQL 626 (678)
..+. -.++..++...+.+..-...+ ++-+++|- |+|||| =||| +=|+=|--|.+||
T Consensus 699 ~~~k---c~~Le~el~r~~~~~~~~~~~----~~~~k~kqe~EiaaAA----------~KLA-----ECQeTI~sLGkQL 756 (769)
T PF05911_consen 699 LEAK---CRELEEELERMKKEESLQQLA----NEDKKIKQEKEIAAAA----------EKLA-----ECQETIASLGKQL 756 (769)
T ss_pred hhhH---HHHHHHHHHhhhcccchhhcc----ccccccchHHHHHHHH----------HHHH-----HHHHHHHHHHHHH
Confidence 2221 224444444444433222222 56666663 566654 2454 4688899999998
Q ss_pred hhhhh
Q 005767 627 EEFES 631 (678)
Q Consensus 627 EE~Es 631 (678)
--.-+
T Consensus 757 ksLa~ 761 (769)
T PF05911_consen 757 KSLAT 761 (769)
T ss_pred HhcCC
Confidence 65443
No 257
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.29 E-value=1.3e+03 Score=26.26 Aligned_cols=92 Identities=21% Similarity=0.240 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005767 467 IVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAE 546 (678)
Q Consensus 467 ~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcE 546 (678)
+++.-|.|-.+||-+-+.+-.+.-+.+...-.=.-++.+.+--|-.+.|+-.-+-=.+.+++-++.+-|+|..-- -
T Consensus 93 s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L----n 168 (401)
T PF06785_consen 93 SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTL----N 168 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH----H
Confidence 344555666666666666555555555544444445556666666666776667777899999999999886432 1
Q ss_pred HHHHhhhhHHHHHHHH
Q 005767 547 QEAAAGRAVEQEFVAQ 562 (678)
Q Consensus 547 lEaeAGkaveqE~~~q 562 (678)
.|.+-..+..++++..
T Consensus 169 rELaE~layqq~L~~e 184 (401)
T PF06785_consen 169 RELAEALAYQQELNDE 184 (401)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 1555566667777665
No 258
>PRK00295 hypothetical protein; Provisional
Probab=20.26 E-value=4.7e+02 Score=22.42 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=8.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHH
Q 005767 251 ENLEKSLIEKDEKVAEIESQGLEL 274 (678)
Q Consensus 251 e~l~k~~~eke~ki~ele~E~~~L 274 (678)
+.|.+-++.-...|..+.+++..|
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 259
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.24 E-value=2.1e+03 Score=28.64 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=41.8
Q ss_pred hhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCC--C------ccccCchhHHHHhhhchhHHHHHHH
Q 005767 130 LDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPR--S------QKYTGLPAVVYGVIKRTNEIVEELV 201 (678)
Q Consensus 130 ~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~--S------qKYtGl~avaygv~KR~neiveel~ 201 (678)
+-+-++.+..|++++.+-. |..-+|.+-|+-+..= -+.-|=|. + +--.|..+.|.|.++++-+.-.+|.
T Consensus 1349 ~~~n~~~L~el~~~l~sL~--L~~lne~vCG~p~apC-~s~CGG~gC~~~~~cGg~sC~Ga~t~A~~A~~~A~~~~~~l~ 1425 (1758)
T KOG0994|consen 1349 LAENSRLLVELRAELSSLP--LTPLNEQVCGAPGAPC-DSLCGGAGCRQDGTCGGLSCRGAVTRAGGALLMAGDADTQLR 1425 (1758)
T ss_pred cccccHHHHHHHHHhcCCC--CchhhHHhcCCCCCCC-CCCCCCCCCCCCCCccCccccchhcccchHHHHhhhHHHHHH
Confidence 5567788888999887766 7778888888764322 11211121 1 1233667777777666665544443
No 260
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=20.19 E-value=9.1e+02 Score=24.41 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=22.4
Q ss_pred hhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHH
Q 005767 51 NSATELSEKFNRLKALAHESIKRRDESTRQRD 82 (678)
Q Consensus 51 ~s~~e~~~~~~rlkala~ea~~krde~~r~rd 82 (678)
.....+...|..|..+++++-..=+++...=|
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~ 53 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLD 53 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888877666666655433
No 261
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.11 E-value=6.3e+02 Score=22.58 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=14.1
Q ss_pred hhchhhHHhhhhHHHHHHHHHHHHh
Q 005767 290 SHRPLLVDQLNYVSKIHDQVDDIIK 314 (678)
Q Consensus 290 ~~r~lL~dql~~v~~ihd~L~~vi~ 314 (678)
+....|-+.+.-+.+-.+.|..|+.
T Consensus 95 ~~~~k~e~~l~~~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 95 SEISKLEEKLEEYKKYEEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444445555566666666666654
No 262
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=20.05 E-value=7.1e+02 Score=23.10 Aligned_cols=69 Identities=25% Similarity=0.249 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Q 005767 522 ESVEGLMLDIAAAEEEISRW---KAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEET 590 (678)
Q Consensus 522 enVEeL~~dIkaaEeEi~RW---KeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEEl 590 (678)
...+.++.++...|--+.|= -.+|..|.+.=...-.+....+...+++.+.+|..|..+..=++.|+|.
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ey 117 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEY 117 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888777664 4556668887777788888888899999999999999998888888754
Done!