Query 005767
Match_columns 678
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 06:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.2 0.0019 6.6E-08 74.6 12.6 21 612-632 1146-1166(1184)
2 1c1g_A Tropomyosin; contractIl 96.5 0.4 1.4E-05 42.7 37.9 26 601-626 256-281 (284)
3 1i84_S Smooth muscle myosin he 96.2 0.0074 2.5E-07 69.8 7.9 26 556-581 1139-1164(1184)
4 3na7_A HP0958; flagellar bioge 94.3 2.7 9.3E-05 40.9 17.8 13 612-624 174-186 (256)
5 3oja_B Anopheles plasmodium-re 93.1 2.4 8.2E-05 44.2 16.0 110 464-584 461-581 (597)
6 3oja_B Anopheles plasmodium-re 92.1 3.4 0.00012 43.1 15.6 109 477-585 453-575 (597)
7 2ocy_A RAB guanine nucleotide 92.0 7.1 0.00024 37.0 16.1 94 525-629 47-148 (154)
8 3na7_A HP0958; flagellar bioge 90.3 14 0.00048 35.9 21.1 51 465-515 24-74 (256)
9 2dfs_A Myosin-5A; myosin-V, in 87.6 16 0.00054 42.9 17.7 121 469-589 924-1051(1080)
10 3tnu_B Keratin, type II cytosk 83.7 10 0.00034 33.8 10.8 74 456-539 19-92 (129)
11 3o0z_A RHO-associated protein 81.6 39 0.0013 32.5 15.1 101 473-580 6-116 (168)
12 3vkg_A Dynein heavy chain, cyt 79.9 50 0.0017 43.3 18.7 63 529-591 1983-2052(3245)
13 3tnu_A Keratin, type I cytoske 79.3 12 0.00039 33.6 9.6 74 456-539 21-94 (131)
14 3mq9_A Bone marrow stromal ant 76.7 59 0.002 33.2 15.1 66 501-580 404-469 (471)
15 2dfs_A Myosin-5A; myosin-V, in 76.2 45 0.0015 39.2 15.7 78 499-583 975-1052(1080)
16 3hnw_A Uncharacterized protein 65.4 83 0.0029 28.8 12.3 89 452-540 25-128 (138)
17 2xdj_A Uncharacterized protein 64.2 34 0.0012 29.2 8.5 50 463-512 10-59 (83)
18 3nmd_A CGMP dependent protein 63.6 11 0.00038 32.0 5.3 41 229-269 21-61 (72)
19 1ic2_A Tropomyosin alpha chain 63.6 63 0.0021 26.8 9.9 75 559-633 4-78 (81)
20 2e7s_A RAB guanine nucleotide 63.5 27 0.00093 32.6 8.3 78 531-633 41-119 (135)
21 3mq9_A Bone marrow stromal ant 60.7 81 0.0028 32.2 12.1 111 519-633 356-466 (471)
22 3ol1_A Vimentin; structural ge 59.8 94 0.0032 27.6 11.7 89 472-578 19-107 (119)
23 1deq_A Fibrinogen (alpha chain 59.8 1.9E+02 0.0065 31.1 16.4 145 454-633 41-195 (390)
24 2fxo_A Myosin heavy chain, car 58.8 1E+02 0.0034 27.5 13.6 20 465-484 40-59 (129)
25 3vkg_A Dynein heavy chain, cyt 57.9 4.6E+02 0.016 34.9 20.5 23 523-545 1956-1978(3245)
26 2v71_A Nuclear distribution pr 57.7 62 0.0021 31.5 10.1 86 228-313 50-147 (189)
27 3hnw_A Uncharacterized protein 57.7 20 0.00068 32.9 6.4 64 226-289 67-130 (138)
28 2wq1_A General control protein 56.0 15 0.0005 27.4 4.1 28 510-544 2-29 (33)
29 3mq7_A Bone marrow stromal ant 55.2 38 0.0013 31.2 7.7 54 452-505 50-110 (121)
30 3trt_A Vimentin; cytoskeleton, 52.5 30 0.001 28.0 6.0 39 455-493 38-76 (77)
31 3u1c_A Tropomyosin alpha-1 cha 52.4 1.2E+02 0.0039 26.3 12.7 37 558-594 48-84 (101)
32 1lwu_C Fibrinogen gamma chain; 51.0 33 0.0011 35.5 7.4 53 464-516 3-55 (323)
33 3he5_A Synzip1; heterodimeric 51.0 27 0.00093 27.4 5.1 41 240-280 9-49 (49)
34 2fxo_A Myosin heavy chain, car 50.1 1E+02 0.0036 27.4 9.7 87 202-292 27-113 (129)
35 2b5u_A Colicin E3; high resolu 50.0 50 0.0017 36.7 8.9 100 95-215 323-422 (551)
36 1uo4_A General control protein 49.3 21 0.00073 26.7 4.1 28 510-544 3-30 (34)
37 3ghg_A Fibrinogen alpha chain; 49.2 2.1E+02 0.007 32.1 13.4 142 460-634 51-193 (562)
38 3a7p_A Autophagy protein 16; c 49.1 62 0.0021 30.8 8.3 65 233-297 67-131 (152)
39 3swk_A Vimentin; cytoskeleton, 48.5 1.2E+02 0.0042 25.6 9.4 50 531-584 23-72 (86)
40 3c3g_A Alpha/beta peptide with 42.1 33 0.0011 25.6 4.1 21 524-544 9-29 (33)
41 2eqb_B RAB guanine nucleotide 41.8 1.9E+02 0.0064 25.7 12.8 75 531-630 21-96 (97)
42 3c3f_A Alpha/beta peptide with 41.4 34 0.0012 25.7 4.1 21 524-544 10-30 (34)
43 3m48_A General control protein 41.1 27 0.00094 26.0 3.6 22 523-544 8-29 (33)
44 2v66_B Nuclear distribution pr 39.0 2.2E+02 0.0075 25.7 10.4 81 233-313 2-94 (111)
45 2hy6_A General control protein 38.7 45 0.0015 25.0 4.4 29 510-545 3-31 (34)
46 3u59_A Tropomyosin beta chain; 38.1 1.9E+02 0.0065 24.7 12.7 39 556-594 46-84 (101)
47 4e61_A Protein BIM1; EB1-like 38.0 2.1E+02 0.0071 25.8 9.5 14 299-312 86-99 (106)
48 2oqq_A Transcription factor HY 36.3 48 0.0016 25.9 4.4 33 265-297 6-38 (42)
49 3oja_A Leucine-rich immune mol 36.1 3.7E+02 0.013 27.5 16.5 103 371-514 366-469 (487)
50 1kd8_B GABH BLL, GCN4 acid bas 35.1 48 0.0016 25.1 4.1 21 524-544 10-30 (36)
51 2oxj_A Hybrid alpha/beta pepti 35.0 49 0.0017 24.8 4.1 22 523-544 9-30 (34)
52 2bni_A General control protein 35.0 48 0.0017 24.9 4.1 21 524-544 10-30 (34)
53 2b9c_A Striated-muscle alpha t 34.8 2.8E+02 0.0095 25.7 10.2 104 191-301 13-119 (147)
54 1t3u_A Conserved hypothetical 34.3 1.9E+02 0.0066 24.4 8.5 64 563-633 32-98 (104)
55 2b9c_A Striated-muscle alpha t 32.9 3E+02 0.01 25.5 11.7 100 500-615 30-130 (147)
56 1kd8_A GABH AIV, GCN4 acid bas 32.2 48 0.0016 25.1 3.7 21 524-544 10-30 (36)
57 3nmd_A CGMP dependent protein 30.6 1.1E+02 0.0039 25.9 6.2 41 475-515 21-61 (72)
58 3swk_A Vimentin; cytoskeleton, 30.0 2.5E+02 0.0087 23.7 9.7 83 474-574 1-83 (86)
59 3mq7_A Bone marrow stromal ant 28.2 3.6E+02 0.012 24.9 11.8 52 517-582 48-99 (121)
60 1deq_A Fibrinogen (alpha chain 27.8 3.6E+02 0.012 29.0 10.8 23 375-397 70-92 (390)
61 1zxa_A CGMP-dependent protein 27.8 73 0.0025 26.6 4.5 39 247-285 10-48 (67)
62 3mtu_A Tropomyosin alpha-1 cha 26.8 1.7E+02 0.0058 24.3 6.6 49 261-310 8-65 (75)
63 1t2k_D Cyclic-AMP-dependent tr 26.6 1.9E+02 0.0064 22.7 6.6 39 505-543 19-57 (61)
64 3u1c_A Tropomyosin alpha-1 cha 26.4 3.1E+02 0.011 23.6 12.7 20 495-514 38-57 (101)
65 1ci6_A Transcription factor AT 25.5 1E+02 0.0035 24.7 4.9 31 261-291 22-52 (63)
66 2i1j_A Moesin; FERM, coiled-co 25.0 89 0.003 34.1 5.9 82 503-584 358-456 (575)
67 1vcs_A Vesicle transport throu 24.6 2.1E+02 0.0072 24.6 7.1 79 233-313 11-90 (102)
68 1m1j_C Fibrinogen gamma chain; 24.2 6.7E+02 0.023 26.7 14.5 49 467-515 85-133 (409)
69 1cii_A Colicin IA; bacteriocin 24.0 4.4E+02 0.015 29.4 10.8 89 220-312 356-444 (602)
70 1ci6_A Transcription factor AT 23.9 1.8E+02 0.0062 23.3 6.1 36 462-497 26-61 (63)
71 3onj_A T-snare VTI1; helix, HA 23.9 2.8E+02 0.0096 23.6 7.7 73 234-308 8-83 (97)
72 1fzc_C Fibrin; blood coagulati 23.4 57 0.002 33.7 3.8 46 228-287 5-50 (319)
73 4emc_A Monopolin complex subun 23.3 1.9E+02 0.0064 28.5 7.1 46 204-253 1-46 (190)
74 3iv1_A Tumor susceptibility ge 23.3 2.4E+02 0.0081 24.3 7.0 63 209-289 11-73 (78)
75 3tnu_B Keratin, type II cytosk 23.3 3.9E+02 0.013 23.6 9.8 58 229-289 38-95 (129)
76 3iv1_A Tumor susceptibility ge 23.1 2.7E+02 0.0091 24.0 7.2 25 189-213 12-36 (78)
77 2qyw_A Vesicle transport throu 23.0 2.7E+02 0.0092 24.0 7.5 73 232-305 20-93 (102)
78 3trt_A Vimentin; cytoskeleton, 22.9 3E+02 0.01 22.1 7.8 38 251-288 38-75 (77)
79 1gk4_A Vimentin; intermediate 22.6 3.4E+02 0.011 22.6 9.4 78 37-152 1-78 (84)
80 2wt7_A Proto-oncogene protein 22.5 2.4E+02 0.0084 22.3 6.6 40 506-545 21-60 (63)
81 2efr_A General control protein 22.0 5E+02 0.017 24.4 18.0 49 497-545 73-121 (155)
82 3ghg_A Fibrinogen alpha chain; 21.7 3.2E+02 0.011 30.6 9.3 43 227-269 109-152 (562)
83 2r2v_A GCN4 leucine zipper; co 21.4 1.2E+02 0.0041 22.8 4.1 21 524-544 10-30 (34)
84 3zbh_A ESXA; unknown function, 21.0 3.1E+02 0.011 21.6 12.0 38 453-490 10-47 (99)
85 3tnu_A Keratin, type I cytoske 21.0 4.4E+02 0.015 23.4 10.2 59 228-289 39-97 (131)
86 3ol1_A Vimentin; structural ge 20.6 4.4E+02 0.015 23.2 13.7 10 564-573 72-81 (119)
87 1e52_A Excinuclease ABC subuni 20.5 1.2E+02 0.0041 24.8 4.4 18 609-626 42-59 (63)
88 3ni0_A Bone marrow stromal ant 20.4 3.7E+02 0.013 24.1 7.8 35 452-486 43-87 (99)
89 1gd2_E Transcription factor PA 20.2 1.6E+02 0.0053 24.6 5.1 44 244-287 25-68 (70)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.19 E-value=0.0019 Score=74.58 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHhhhhhh
Q 005767 612 ASRLRDRVEELSHQLEEFESR 632 (678)
Q Consensus 612 aA~LReRIEELtRQLEE~Esr 632 (678)
-..|...+++|..+|++...-
T Consensus 1146 ~~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S 1146 KRDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 346777777777777776543
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.53 E-value=0.4 Score=42.73 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=13.7
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhH
Q 005767 601 AEKSLRLADTRASRLRDRVEELSHQL 626 (678)
Q Consensus 601 AEkSLkLAD~RaA~LReRIEELtRQL 626 (678)
....+.-...+..+++.+++.+..+|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 256 LEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455556666666655554
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.19 E-value=0.0074 Score=69.80 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005767 556 EQEFVAQLSSLKQELEEAKQALSESE 581 (678)
Q Consensus 556 eqE~~~qls~LkqELe~~K~aLeesn 581 (678)
...+..+...|.+++..++..++++.
T Consensus 1139 ~~~le~q~~~L~~ele~L~~~Ieel~ 1164 (1184)
T 1i84_S 1139 RNKAEKQKRDLSEELEALKTELEDTL 1164 (1184)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566666666666555543
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.31 E-value=2.7 Score=40.91 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHH
Q 005767 612 ASRLRDRVEELSH 624 (678)
Q Consensus 612 aA~LReRIEELtR 624 (678)
.+.|...-+-+.+
T Consensus 174 ~~~lL~~Yerir~ 186 (256)
T 3na7_A 174 EPKIYSFYERIRR 186 (256)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4455555555554
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.09 E-value=2.4 Score=44.24 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005767 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHL-----------EAQAKELSHRMKRIEELEEKERIANESVEGLMLDIA 532 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~-----------e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIk 532 (678)
++..|..+..++.+....+...+.+.+..+... +...+++.+...+++.++..-..+-+.++..+..+.
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 355666666666666666666666665544432 344445555555666666666666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005767 533 AAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKL 584 (678)
Q Consensus 533 aaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KL 584 (678)
..+.|+.+|+..+ ++..+++..|+||+..+++.+.....|+
T Consensus 541 ~~~~~~~~le~~~-----------~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 541 DLEQENIALEKQL-----------DNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHhhhHHHHHHH-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777776666544 4445555666666666666666666554
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.14 E-value=3.4 Score=43.10 Aligned_cols=109 Identities=21% Similarity=0.162 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005767 477 ELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKER-----------IANESVEGLMLDIAAAEEEISRWKAAA 545 (678)
Q Consensus 477 eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErEr-----------v~~enVEeL~~dIkaaEeEi~RWKeAc 545 (678)
+|+..+.+.+.+...|+.....+-+.+......|++.-++.. .+.+-+..+-.+++..+.+..+-+.+.
T Consensus 453 ~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 334444444444445554444455555555555544444333 233333344444444444555544443
Q ss_pred HHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 005767 546 EQEAAAGRA---VEQEFVAQLSSLKQELEEAKQALSESEKKLG 585 (678)
Q Consensus 546 ElEaeAGka---veqE~~~qls~LkqELe~~K~aLeesn~KLK 585 (678)
+..-+.-+. ...++++++...++.+.++++.+.....++|
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 222222221 1223333344444555555555544444443
No 7
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.04 E-value=7.1 Score=37.01 Aligned_cols=94 Identities=22% Similarity=0.335 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhcchHHHHHHHHHHHHHHH-
Q 005767 525 EGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQAL-SESEKKLGFKEETAAAAMTARDAAE- 602 (678)
Q Consensus 525 EeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aL-eesn~KLKlKEElAaAAMAAr~AAE- 602 (678)
..|..+.+..+.|+.++..+...|-..-..++.+. ..+.+||+.+=++| ++||+ |-|+|=-++++++
T Consensus 47 ~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~----~~ie~ElEeLTasLFeEAN~-------MVa~ar~~~~~~e~ 115 (154)
T 2ocy_A 47 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEA----DKLNKEVEDLTASLFDEANN-------MVADARKEKYAIEI 115 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33445567789999999999999988877776666 88999999999998 45653 5566777777777
Q ss_pred ------HhhhhhhhhhHHHHHHHHHHHHhHhhh
Q 005767 603 ------KSLRLADTRASRLRDRVEELSHQLEEF 629 (678)
Q Consensus 603 ------kSLkLAD~RaA~LReRIEELtRQLEE~ 629 (678)
+-|+=+|.+-..|+..+-+|.+-++..
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555556666666666666665555443
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.34 E-value=14 Score=35.94 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (678)
Q Consensus 465 E~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEE 515 (678)
.+..+++..+|.+|+..+...+.....++..+..-..++..+...|.++..
T Consensus 24 ~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555444444444444444443
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.59 E-value=16 Score=42.88 Aligned_cols=121 Identities=18% Similarity=0.176 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHH
Q 005767 469 KASQLEIVELRHSVEELRAESSLLKEHL----EAQAKELSHRMKRIEELEEKER---IANESVEGLMLDIAAAEEEISRW 541 (678)
Q Consensus 469 K~~qlEI~eLr~sleEsRsE~~~Lq~l~----e~QaKeIa~~~~~IkeLEErEr---v~~enVEeL~~dIkaaEeEi~RW 541 (678)
..+..+|.+|++.|++...+...|+.-. +.=.+++..+...+.+|+..+. -+.+.|..|..+|...++++.+.
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666665555433333333221 1223344444444444333211 11233555555555555555443
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Q 005767 542 KAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEE 589 (678)
Q Consensus 542 KeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEE 589 (678)
..-.+.=-++-....++++..++.|++|...+++.+...++.+.-+++
T Consensus 1004 ~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221111222334688889999999999999999999976655544
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.71 E-value=10 Score=33.84 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=39.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005767 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAE 535 (678)
Q Consensus 456 Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaE 535 (678)
++.+.|+.-...+...+.||++|++.+..++.+.+.|+.. .+.+...|.++|.+..... .++-.-|...|
T Consensus 19 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~-------~~~LE~~l~e~e~~~~~~l---~~~q~~i~~lE 88 (129)
T 3tnu_B 19 ELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQ-------CANLQNAIADAEQRGELAL---KDARNKLAELE 88 (129)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3555566666678888999999999999999998877654 3556667777776654433 33333344444
Q ss_pred HHHH
Q 005767 536 EEIS 539 (678)
Q Consensus 536 eEi~ 539 (678)
.++.
T Consensus 89 ~eL~ 92 (129)
T 3tnu_B 89 EALQ 92 (129)
T ss_dssp HHHH
T ss_pred HhHH
Confidence 4443
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.59 E-value=39 Score=32.51 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHH----HhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005767 473 LEIVELRHSVEEL----RAESS---LLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (678)
Q Consensus 473 lEI~eLr~sleEs----RsE~~---~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAc 545 (678)
-+|+.|+.+|++. |+|++ +|++...+=.+.++....-..||.++ +-.|-..-.+.|.|+..-.-+.
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~-------~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQER-------NRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777765 55555 56666555556666666666666666 4455556667788888888888
Q ss_pred HHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005767 546 EQEAAA---GRAVEQEFVAQLSSLKQELEEAKQALSES 580 (678)
Q Consensus 546 ElEaeA---GkaveqE~~~qls~LkqELe~~K~aLees 580 (678)
++|-.+ |--.+.|++..+..|..||+++|..+.-+
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887754 44456688889999999999999876543
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.95 E-value=50 Score=43.33 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchHHHH
Q 005767 529 LDIAAAEEEISRWKAAAEQEAAAGR------AVEQEFVAQLSSLKQELEEAKQALSESEKKL-GFKEETA 591 (678)
Q Consensus 529 ~dIkaaEeEi~RWKeAcElEaeAGk------aveqE~~~qls~LkqELe~~K~aLeesn~KL-KlKEElA 591 (678)
..+++.++||..=|..|+.+.+... ....+.++++...++.|.++++.|.+.+.|| ++|++.+
T Consensus 1983 ~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 1983 VQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555443321 2233344444444444444555555555444 2455444
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.31 E-value=12 Score=33.59 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005767 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAE 535 (678)
Q Consensus 456 Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaE 535 (678)
++.+.++.-...++..+.||++|++.+..+..+.+.|+.. .+.+...|.++|.+...... ++-..|...|
T Consensus 21 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~-------~~sLE~~l~e~e~~~~~~l~---~~q~~i~~lE 90 (131)
T 3tnu_A 21 ELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSM-------KASLENSLEETKGRYCMQLA---QIQEMIGSVE 90 (131)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3445556666678889999999999999999998777654 34566677777766544332 3333344444
Q ss_pred HHHH
Q 005767 536 EEIS 539 (678)
Q Consensus 536 eEi~ 539 (678)
.++.
T Consensus 91 ~eL~ 94 (131)
T 3tnu_A 91 EQLA 94 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 14
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.70 E-value=59 Score=33.22 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005767 501 KELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSES 580 (678)
Q Consensus 501 KeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLees 580 (678)
|+|.+...-...+|-+-.-.|+.|=-||.-+. -++.-|.+-++|++.+|+.|+++|+.+++.+++.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 404 QELTEAQKGFQDVEAQAATANHTVMALMASLD--------------AEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777788888889999988876543 4555566679999999999999999998877653
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.16 E-value=45 Score=39.16 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 499 QAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALS 578 (678)
Q Consensus 499 QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLe 578 (678)
+.+++.+....|+.|++.-.-+.+.++.+..+-++.|+.+..=++-.+ .-+..+.++...|+|+++.+...+.
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~-------~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE-------QLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777888999998888899999999999999998888776433 3355666667777777777775555
Q ss_pred Hhhhh
Q 005767 579 ESEKK 583 (678)
Q Consensus 579 esn~K 583 (678)
..+.+
T Consensus 1048 ~~~~~ 1052 (1080)
T 2dfs_A 1048 DQAKE 1052 (1080)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.37 E-value=83 Score=28.82 Aligned_cols=89 Identities=13% Similarity=0.186 Sum_probs=60.4
Q ss_pred chhhHHhhHHHHHHHHHHHHHHH--H-------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 452 TEEDEIYNLAGALENIVKASQLE--I-------------VELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (678)
Q Consensus 452 ~ee~Ev~sLAsalE~~mK~~qlE--I-------------~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEEr 516 (678)
.+++-+..+|.-|..-|+.++.. - .-+=|-+-.++.+.+.|...++.-.++|..+.+.+..+..+
T Consensus 25 e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 25 ESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677999999999999888732 1 12334455556667777777777777777777777777766
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH
Q 005767 517 ERIANESVEGLMLDIAAAEEEISR 540 (678)
Q Consensus 517 Erv~~enVEeL~~dIkaaEeEi~R 540 (678)
..-+...+++|-.++.+.+.++.+
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666554
No 17
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=64.19 E-value=34 Score=29.24 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEE 512 (678)
Q Consensus 463 alE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~Ike 512 (678)
.+|+++.+...-..+|+..++.++.|+..|+-.+|.+.-+|.....+-++
T Consensus 10 ~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 10 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46777777777889999999999999999999999999988887665554
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.63 E-value=11 Score=32.02 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=31.7
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 005767 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (678)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~ 269 (678)
|-+|+..+..-.+|+-.|-..++.|++.+.+||..|.+|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888777778888888888888888888888884443
No 19
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.56 E-value=63 Score=26.77 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhHhhhhhhc
Q 005767 559 FVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLEEFESRE 633 (678)
Q Consensus 559 ~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA~LReRIEELtRQLEE~Esre 633 (678)
+.+.+..|+.+.+.+....+.++.+|+=.+.-+..+-.=-.+--+=+++-..=--...+|+...+..|++.+...
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~ 78 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999999888887777666666666677766666777788888888888877654
No 20
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.49 E-value=27 Score=32.57 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhcchHHHHHHHHHHHHHHHHhhhhhh
Q 005767 531 IAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQAL-SESEKKLGFKEETAAAAMTARDAAEKSLRLAD 609 (678)
Q Consensus 531 IkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aL-eesn~KLKlKEElAaAAMAAr~AAEkSLkLAD 609 (678)
.+-.+.|+.++..+...|-..-..++.+. ..+.+||+.+-++| ++||+ |-|.|=-++
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~----~~ie~ElE~LTasLFeEAN~-------MVa~ar~~~----------- 98 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAEEEA----DKLNKEVEDLTASLFDEANN-------LVADARMEK----------- 98 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHHHTT----HHHHHHHHHHHHHHHHHHHH-------HHHHTTHHH-----------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-----------
Confidence 35677888999988888877766666555 88999999999998 45553 334433333
Q ss_pred hhhHHHHHHHHHHHHhHhhhhhhc
Q 005767 610 TRASRLRDRVEELSHQLEEFESRE 633 (678)
Q Consensus 610 ~RaA~LReRIEELtRQLEE~Esre 633 (678)
+.+..|.+.|.+||.+.+..-
T Consensus 99 ---~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 99 ---YAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp ---HHHHHHHHHHHHTTTHHHHCC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655443
No 21
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=60.72 E-value=81 Score=32.20 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=66.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH
Q 005767 519 IANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTAR 598 (678)
Q Consensus 519 v~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr 598 (678)
++...+..++..-.-.++=+......++......++ +.|.......|.|.|.+++..+..++.+------|- |+-+
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 431 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRA-VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTV---MALM 431 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHH-HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhH---HHHH
Confidence 344445555544334444455555555555554444 446666677888888888887777665533322333 4444
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHhHhhhhhhc
Q 005767 599 DAAEKSLRLADTRASRLRDRVEELSHQLEEFESRE 633 (678)
Q Consensus 599 ~AAEkSLkLAD~RaA~LReRIEELtRQLEE~Esre 633 (678)
+--|+-.--+--|.-+|--.|-+|++||++.+...
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333344588899999999999999887654
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=59.79 E-value=94 Score=27.55 Aligned_cols=89 Identities=17% Similarity=0.299 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005767 472 QLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAA 551 (678)
Q Consensus 472 qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeA 551 (678)
..+|.+||.+|+..-.|-.+|..-+..---.+...+...+ +-+.--..+|.++...|.... .
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE--------------~E~~~r~~~E~di~~lrK~lD----~ 80 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ--------------EEMLQREEAENTLQSFRQDVD----N 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--------------HHHHHHHHHHHHHHHhhhccc----H
Confidence 4578899999988888877776544332222222222111 111223445556666554432 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 552 GRAVEQEFVAQLSSLKQELEEAKQALS 578 (678)
Q Consensus 552 GkaveqE~~~qls~LkqELe~~K~aLe 578 (678)
.--..-++..++.+|++||.=+|..-+
T Consensus 81 ~~l~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 81 ASLARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222344677778888888887776543
No 23
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.77 E-value=1.9e+02 Score=31.09 Aligned_cols=145 Identities=13% Similarity=0.178 Sum_probs=95.2
Q ss_pred hhHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 005767 454 EDEIYN-------LAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEG 526 (678)
Q Consensus 454 e~Ev~s-------LAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEe 526 (678)
++++-. |=++|.+.=+++...|.+|++.|.....-..-....+-.=...+.+...++++.+++..=+++.+|.
T Consensus 41 DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~ 120 (390)
T 1deq_A 41 DEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRS 120 (390)
T ss_pred hhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 555666 7888988889999999999999998754444444444444455556666666666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhh
Q 005767 527 LMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLR 606 (678)
Q Consensus 527 L~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLk 606 (678)
=...|+ +.|..-|. .|.+|+.-|+..+..|-..+.++ +-.-++-+
T Consensus 121 ~i~~lk--------------------~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~I--------------d~c~~~C~ 165 (390)
T 1deq_A 121 RIEILR--------------------RKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDI--------------DIKIRSCK 165 (390)
T ss_pred HHHHHH--------------------HHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH--------------HHHhcccc
Confidence 555554 23444444 67777777777777777777666 33444555
Q ss_pred hhhhhhHHHH---HHHHHHHHhHhhhhhhc
Q 005767 607 LADTRASRLR---DRVEELSHQLEEFESRE 633 (678)
Q Consensus 607 LAD~RaA~LR---eRIEELtRQLEE~Esre 633 (678)
-+=.|+..++ +=-+.+.+||+++.+..
T Consensus 166 ~sC~~~l~~~vD~e~ye~qqKQL~qv~a~~ 195 (390)
T 1deq_A 166 GSCSRALEHKVDLEDYKNQQKQLEQVIAIN 195 (390)
T ss_pred cccchhhhhhccHHHHHHHHHHHHhhhhhc
Confidence 5556666655 34567778888887665
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=58.79 E-value=1e+02 Score=27.52 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005767 465 ENIVKASQLEIVELRHSVEE 484 (678)
Q Consensus 465 E~~mK~~qlEI~eLr~sleE 484 (678)
+..+..+..+.++|+.+|..
T Consensus 40 e~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 40 EEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554
No 25
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.86 E-value=4.6e+02 Score=34.89 Aligned_cols=23 Identities=4% Similarity=0.030 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 005767 523 SVEGLMLDIAAAEEEISRWKAAA 545 (678)
Q Consensus 523 nVEeL~~dIkaaEeEi~RWKeAc 545 (678)
..+.+|..|..--+|+..=|..+
T Consensus 1956 ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A 1956 QANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555444444444333
No 26
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=57.74 E-value=62 Score=31.49 Aligned_cols=86 Identities=13% Similarity=0.253 Sum_probs=0.0
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHH----HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh--------hhchhh
Q 005767 228 EVSELEATISGLREEVAKKSSFIENL----EKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE--------SHRPLL 295 (678)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l----~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e--------~~r~lL 295 (678)
++.++|..++.|+..++.-..+++.| ..+.++--..|+.|++|+..|+..+..|-.+|+.+| ..|-.-
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~ 129 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 129 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 005767 296 VDQLNYVSKIHDQVDDII 313 (678)
Q Consensus 296 ~dql~~v~~ihd~L~~vi 313 (678)
.-.-++=++...-|...+
T Consensus 130 ~SleD~e~kln~aiEr~a 147 (189)
T 2v71_A 130 MSLEDFEQRLNQAIERNA 147 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=57.68 E-value=20 Score=32.91 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=48.6
Q ss_pred eeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 005767 226 AIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 226 AIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e 289 (678)
|=|.-++...+..|+.++..+..++.+|-..+.....++.++.++...|++.+.+|+.++..|+
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666667777788888888888888888888888888888888888888887776
No 28
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=56.00 E-value=15 Score=27.43 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005767 510 IEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 510 IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeA 544 (678)
.+.||+| ||+|+..+...|.||.|-|.-
T Consensus 2 MnQLEdK-------VEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDK-------IEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHH-------HHHHHHhhHHHHHHHHHHHHH
Confidence 3456665 999999999999999998864
No 29
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=55.19 E-value=38 Score=31.23 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=44.2
Q ss_pred chhhHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005767 452 TEEDEIYNLAGALENI-------VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH 505 (678)
Q Consensus 452 ~ee~Ev~sLAsalE~~-------mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~ 505 (678)
+|..-|.+|-..|+.. |+.++-||..|.|.|.++-++.++|+...+.+...|+.
T Consensus 50 TCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 50 TANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 5778888888777763 78899999999999999999999999888876655543
No 30
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=52.52 E-value=30 Score=27.97 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=31.7
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005767 455 DEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLK 493 (678)
Q Consensus 455 ~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq 493 (678)
+++.+.|+.=...+...+.||++|++.+.-+..|++.|+
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346666777777888899999999999999998888775
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=52.39 E-value=1.2e+02 Score=26.32 Aligned_cols=37 Identities=32% Similarity=0.379 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 005767 558 EFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAA 594 (678)
Q Consensus 558 E~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAA 594 (678)
.++..+..|..+|+++...|..++.||.-.+..+..|
T Consensus 48 sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a 84 (101)
T 3u1c_A 48 QLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777666655433
No 32
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=51.01 E-value=33 Score=35.48 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (678)
Q Consensus 464 lE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEEr 516 (678)
+...+++++-+|.+|...|-..-+.+..|+..+..+..+|.++...|.+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999988888888888899988888888888888888888754
No 33
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=50.97 E-value=27 Score=27.38 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=32.1
Q ss_pred hHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 005767 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (678)
Q Consensus 240 r~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e 280 (678)
-.|||+--.+-|.|.|.---|..-|+-+++|+-+||.+|++
T Consensus 9 enevaslenenetlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 44567777777888777777788899999999999988753
No 34
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=50.13 E-value=1e+02 Score=27.37 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=50.4
Q ss_pred hhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 005767 202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (678)
Q Consensus 202 ~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~ 281 (678)
..+....+.|.+ |+..+-.+--|...|-..+..-++-++.....++.|.++-.+-+.+|.+++..+....+.+..+
T Consensus 27 e~l~k~e~~r~e----le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 27 EALEKSEARRKE----LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 4444444445556666666666666666666677776666666777776666666666666655
Q ss_pred HHHhhchhhhc
Q 005767 282 EDKLKNLESHR 292 (678)
Q Consensus 282 e~kl~~~e~~r 292 (678)
...-+.++..-
T Consensus 103 ~~~kkkle~e~ 113 (129)
T 2fxo_A 103 TAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55554444333
No 35
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=49.98 E-value=50 Score=36.65 Aligned_cols=100 Identities=15% Similarity=0.229 Sum_probs=56.3
Q ss_pred ccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 005767 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (678)
Q Consensus 95 ~~~~s~el~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP 174 (678)
.++.-.||.+++|.-...+..++-+++ ..+++++++..+-..|-..+- -+++|-+|...|+-
T Consensus 323 ~e~a~ael~~a~k~~a~~~er~~~t~~--------------~~~~~~~~~~~~n~~~~~~~~----~~~~f~~~n~~p~~ 384 (551)
T 2b5u_A 323 YERARAELNQANEDVARNQERQAKAVQ--------------VYNSRKSELDAANKTLADAIA----EIKQFNRFAHDPMA 384 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH----HHHHHGGGTTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhHHHHHhhhhHHHHHHH----hhhhhhhhccChhh
Confidence 344445566676666666655555555 445555555443333333332 23566666555543
Q ss_pred CCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHH
Q 005767 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVR 215 (678)
Q Consensus 175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aR 215 (678)
-- .++.+.-.. -++|+++=|.-+=.+.|++.+.-.+|.
T Consensus 385 ~G--h~~w~~~~~-~~~~~~~dv~~~~a~~d~~~~~~s~~~ 422 (551)
T 2b5u_A 385 GG--HRMWQMAGL-KAQRAQTDVNNKQAAFDAAAKEKSDAD 422 (551)
T ss_dssp TH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--chhhhhccc-hhhhhhhhhhhHHHHHHHHhhcccchh
Confidence 33 222222111 588999999999899999877665554
No 36
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=49.29 E-value=21 Score=26.74 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005767 510 IEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 510 IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeA 544 (678)
.+.||+| ||+|+..-...|.||+|-|.-
T Consensus 3 M~QLEdK-------VEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 3 MKQIEDK-------GEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp CHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-------HHHHHHhhHHHHHHHHHHHHH
Confidence 3456655 999999999999999998864
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.20 E-value=2.1e+02 Score=32.12 Aligned_cols=142 Identities=12% Similarity=0.144 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 005767 460 LAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEIS 539 (678)
Q Consensus 460 LAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~ 539 (678)
|=++|.+.=+.+..-|++|+.+|++...-..--..++......|.++..+..++++...=+++.++.=...|+
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLK------- 123 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLK------- 123 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHH-------
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH-------
Confidence 4566788888888889999988887622111122223333344444444555555433333333333222222
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH-HHHHHHhhhhhhhhhHHHHHH
Q 005767 540 RWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAAMTA-RDAAEKSLRLADTRASRLRDR 618 (678)
Q Consensus 540 RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAA-r~AAEkSLkLAD~RaA~LReR 618 (678)
.+|. ..+ ++|.+|+.=|+..+..|-..+. +|.+ .++.--+-.-+=.|...|. =
T Consensus 124 -------ekVd------nQl-snIrvLQsnLedq~~kIQRLEv-----------DIdiqirsCKgsCsr~~~~~vd~~-s 177 (562)
T 3ghg_A 124 -------RKVI------EKV-QHIQLLQKNVRAQLVDMKRLEV-----------DIDIKIRSCRGSCSRALAREVDLK-D 177 (562)
T ss_dssp -------HHHH------HHH-HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHGGGTBSCCCCCCCCHH-H
T ss_pred -------HHHH------HHH-HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhccccccchheeecchH-H
Confidence 2222 222 5556666666665555544432 1111 1122222222222333333 4
Q ss_pred HHHHHHhHhhhhhhcc
Q 005767 619 VEELSHQLEEFESRED 634 (678)
Q Consensus 619 IEELtRQLEE~Esre~ 634 (678)
-+.+.+||+++.+..=
T Consensus 178 Y~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 178 YEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhccc
Confidence 6899999999998864
No 38
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.08 E-value=62 Score=30.81 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=54.3
Q ss_pred HHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHH
Q 005767 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (678)
Q Consensus 233 Ea~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~d 297 (678)
-.+|..|+.+++.....+.+|...+.+|..-+..+.-|+..|+=....++.+++.++.-+..|++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777888888888888888998888888889999999999999999999876666665
No 39
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=48.50 E-value=1.2e+02 Score=25.64 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005767 531 IAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEKKL 584 (678)
Q Consensus 531 IkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~KL 584 (678)
|.-+-..+-.||.=.|.|+.--..++-+| ..|++.++.+--+-...+.|+
T Consensus 23 ~dn~~~~~edfk~KyE~E~~~R~~~E~d~----~~LrkdvD~a~l~r~dLE~kv 72 (86)
T 3swk_A 23 RDNLAEDIMRLREKLQEEMLQREEAENTL----QSFRQDVDNASLARLDLERKV 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333 445555554444444444444
No 40
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=42.06 E-value=33 Score=25.59 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005767 524 VEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 524 VEeL~~dIkaaEeEi~RWKeA 544 (678)
||+|+..-.+.|.||.|-|.-
T Consensus 9 vEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999998864
No 41
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.83 E-value=1.9e+02 Score=25.75 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhcchHHHHHHHHHHHHHHHHhhhhhh
Q 005767 531 IAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALS-ESEKKLGFKEETAAAAMTARDAAEKSLRLAD 609 (678)
Q Consensus 531 IkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLe-esn~KLKlKEElAaAAMAAr~AAEkSLkLAD 609 (678)
.+..+.|+.++......|-..-..++.+. ..+.+||+.+-++|= ++|+ |-|.|--++
T Consensus 21 ~~~~~~e~~~L~~~l~eE~~~R~~aE~~~----~~ie~ElEeLTasLFeEAN~-------MVa~ar~e~----------- 78 (97)
T 2eqb_B 21 LSDRDDEVKRLREDIAKENELRTKAEEEA----DKLNKEVEDLTASLFDEANN-------MVADARKEK----------- 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-----------
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-----------
Confidence 33488889999988888887776666655 889999999999984 4553 333332222
Q ss_pred hhhHHHHHHHHHHHHhHhhhh
Q 005767 610 TRASRLRDRVEELSHQLEEFE 630 (678)
Q Consensus 610 ~RaA~LReRIEELtRQLEE~E 630 (678)
+.+..|.+.|..||.+-|
T Consensus 79 ---~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 79 ---YAIEILNKRLTEQLREKD 96 (97)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhcc
Confidence 345566677777776654
No 42
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.41 E-value=34 Score=25.66 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005767 524 VEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 524 VEeL~~dIkaaEeEi~RWKeA 544 (678)
||+|+..-.+.|.||.|-|.-
T Consensus 10 VEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 10 LEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999999998864
No 43
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.08 E-value=27 Score=26.02 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 005767 523 SVEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 523 nVEeL~~dIkaaEeEi~RWKeA 544 (678)
-||+|+..-...|.||.|-|.-
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3999999999999999998863
No 44
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=39.02 E-value=2.2e+02 Score=25.71 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHhhhchHHHhhhhhhHHHHHHHHHHhHHH----HHHHHHhHHHHHHHHHHHHHHhhchh--------hhchhhHHhhh
Q 005767 233 EATISGLREEVAKKSSFIENLEKSLIEKDEK----VAEIESQGLELRQLVNEYEDKLKNLE--------SHRPLLVDQLN 300 (678)
Q Consensus 233 Ea~is~lr~eva~k~s~~e~l~k~~~eke~k----i~ele~E~~~Lk~~v~e~e~kl~~~e--------~~r~lL~dql~ 300 (678)
|..++.|+..++.=..++|.|-..+..-... ++.|++|+..|++..+.|-.+|+.+| +.|-.-+---+
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Q ss_pred hHHHHHHHHHHHH
Q 005767 301 YVSKIHDQVDDII 313 (678)
Q Consensus 301 ~v~~ihd~L~~vi 313 (678)
+=++....+...+
T Consensus 82 ~E~k~n~aiErna 94 (111)
T 2v66_B 82 FEQRLNQAIERNA 94 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 45
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=38.71 E-value=45 Score=25.00 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005767 510 IEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (678)
Q Consensus 510 IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAc 545 (678)
.+.||+| ||+|+..-...|.||.|-|...
T Consensus 3 MnQLEdk-------VEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 3 VKQLADA-------VEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-------HHHHHHhhHHHHHHHHHHHHHh
Confidence 3456655 9999999999999999998764
No 46
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=38.11 E-value=1.9e+02 Score=24.73 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 005767 556 EQEFVAQLSSLKQELEEAKQALSESEKKLGFKEETAAAA 594 (678)
Q Consensus 556 eqE~~~qls~LkqELe~~K~aLeesn~KLKlKEElAaAA 594 (678)
+..+++.+..|..+++.+...+..++.||...+..+.-|
T Consensus 46 i~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A 84 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334777788888899999999998888888777766544
No 47
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=37.98 E-value=2.1e+02 Score=25.82 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHH
Q 005767 299 LNYVSKIHDQVDDI 312 (678)
Q Consensus 299 l~~v~~ihd~L~~v 312 (678)
..++.+|..+||.-
T Consensus 86 ~~~~~kIq~ILYaT 99 (106)
T 4e61_A 86 LRFVKKVESILYAT 99 (106)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 45566666666653
No 48
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=36.29 E-value=48 Score=25.86 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=16.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhchhhhchhhHH
Q 005767 265 AEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (678)
Q Consensus 265 ~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~d 297 (678)
++||..+.+|..++.+||.++..+..-+.+|..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444445555555555555555554545443
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.14 E-value=3.7e+02 Score=27.49 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=69.4
Q ss_pred HHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhccccccccccCCCCCCCCccccCCC
Q 005767 371 SREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAM 450 (678)
Q Consensus 371 ~ke~k~Le~~V~~L~kEn~dI~sLLR~AL~EKea~d~~qk~s~llQiAE~GLq~vGfgF~~~~~~g~g~~~~S~d~~~~~ 450 (678)
..++++++..|...-++...+..-++.+...-+- | ..+.
T Consensus 366 ~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~----~-------------------------------------~~~~ 404 (487)
T 3oja_A 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL----Q-------------------------------------HATE 404 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC----C-------------------------------------CCSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhh----c-------------------------------------cccc
Confidence 3445678888888888877777777666652211 0 0000
Q ss_pred cc-hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 451 ET-EEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (678)
Q Consensus 451 ~~-ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLE 514 (678)
.. .-..+.......+++.+.++.|+...++..+..+.+...|+.--+.+.++|.++...|.+-.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 405 EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 11 22336667788888999999999888888888888888888777777777776666665543
No 50
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.06 E-value=48 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005767 524 VEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 524 VEeL~~dIkaaEeEi~RWKeA 544 (678)
||+|+..-...|.||.|-|.-
T Consensus 10 VEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 10 VEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999998864
No 51
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.02 E-value=49 Score=24.82 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 005767 523 SVEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 523 nVEeL~~dIkaaEeEi~RWKeA 544 (678)
-||+|+..-.+.|.||.|-|.-
T Consensus 9 kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 3999999999999999998864
No 52
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.95 E-value=48 Score=24.85 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005767 524 VEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 524 VEeL~~dIkaaEeEi~RWKeA 544 (678)
||+|+..-.+.+.||.|-|.-
T Consensus 10 vEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 10 LEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHH
Confidence 999999999999999998864
No 53
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=34.78 E-value=2.8e+02 Score=25.67 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=56.4
Q ss_pred hchhHHHHHHHhhhhhhhhhhh---HHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 005767 191 KRTNEIVEELVGQIDATAKSRN---DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (678)
Q Consensus 191 KR~neiveel~~Q~da~~k~rn---~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~el 267 (678)
.|+.+-+.......+.+.|.-+ ++|-.+++|.+.-.=-+.+||..+... ....+.-.+...+-..|+.-+
T Consensus 13 er~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkea-------k~~aeeadrKyeE~~RKl~~~ 85 (147)
T 2b9c_A 13 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA-------KHIAEDADRKYEEVARKLVII 85 (147)
T ss_dssp GGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHH
Confidence 4555555555666665555544 578888888876555556666666332 233333333344444445545
Q ss_pred HHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhh
Q 005767 268 ESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNY 301 (678)
Q Consensus 268 e~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql~~ 301 (678)
+.+.....++....+.+++.|+..=..+-.+|++
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555443444444444
No 54
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=34.26 E-value=1.9e+02 Score=24.37 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHhHhhhhhhc
Q 005767 563 LSSLKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADT---RASRLRDRVEELSHQLEEFESRE 633 (678)
Q Consensus 563 ls~LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~---RaA~LReRIEELtRQLEE~Esre 633 (678)
...+.+.+.+.+.. ++..-.+. .+.|||-..|+.-+++-+. ....+.+||+.|+..|+++-.+.
T Consensus 32 A~~vd~~~~~i~~~-----~~~~~~~r--~~vmaALnladel~~~~~~~~~~~~~~~~~i~~L~~~le~aL~~~ 98 (104)
T 1t3u_A 32 ARYLDGKMREIRSS-----GKVIGADR--VAVMAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRALANP 98 (104)
T ss_dssp HHHHHHHHHHHHTT-----TCSCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH-----cCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555444432 23333333 6689999999999988765 46789999999999999876543
No 55
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=32.93 E-value=3e+02 Score=25.45 Aligned_cols=100 Identities=22% Similarity=0.219 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 500 AKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSE 579 (678)
Q Consensus 500 aKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLee 579 (678)
.|.-.+...-.|-||.|..--.+.++.|...+++|..= |+ +|-+. -.|....+..+..+|+++..-.+.
T Consensus 30 ek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~-------ae---eadrK-yeE~~RKl~~~E~dLeraeeRae~ 98 (147)
T 2b9c_A 30 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI-------AE---DADRK-YEEVARKLVIIESDLERAEERAEL 98 (147)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH-------HH---HHHHh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555667778888888888888888877766521 11 22222 355556666777777777777777
Q ss_pred hhhhhc-chHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005767 580 SEKKLG-FKEETAAAAMTARDAAEKSLRLADTRASRL 615 (678)
Q Consensus 580 sn~KLK-lKEElAaAAMAAr~AAEkSLkLAD~RaA~L 615 (678)
+++|.+ |.+++-.. ..--+||..++..++.-
T Consensus 99 aE~k~~eLEeeL~~~-----~~nlKsLE~~eekas~r 130 (147)
T 2b9c_A 99 SEGKCAELEEELKTV-----TNNLKSLEDKVEELLSK 130 (147)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHhhHHhHHHHHHH
Confidence 777665 33333321 12345666666666543
No 56
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=32.22 E-value=48 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005767 524 VEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 524 VEeL~~dIkaaEeEi~RWKeA 544 (678)
||+|+..-...|.||.|-|.-
T Consensus 10 VEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 10 VEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999998864
No 57
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.65 E-value=1.1e+02 Score=25.93 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 475 IVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (678)
Q Consensus 475 I~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEE 515 (678)
|-+|+..|.....|.-....++....+.|.++...|++|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888899999999999999998864
No 58
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.99 E-value=2.5e+02 Score=23.72 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005767 474 EIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGR 553 (678)
Q Consensus 474 EI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGk 553 (678)
||.+||.+++.+-.|-.+|..-.. ....-+.++-.|+ |+=+.--..+|.++...|.-+ ...-
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~d-------n~~~~~edfk~Ky-------E~E~~~R~~~E~d~~~Lrkdv----D~a~ 62 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERD-------NLAEDIMRLREKL-------QEEMLQREEAENTLQSFRQDV----DNAS 62 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTH----HHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhH----HHHH
Confidence 467788888877777666654322 2222222222221 111222244555555555432 2222
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005767 554 AVEQEFVAQLSSLKQELEEAK 574 (678)
Q Consensus 554 aveqE~~~qls~LkqELe~~K 574 (678)
-.--++..+|.+|++||.=+|
T Consensus 63 l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 63 LARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 234578888999999987665
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.19 E-value=3.6e+02 Score=24.93 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=40.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005767 517 ERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQLSSLKQELEEAKQALSESEK 582 (678)
Q Consensus 517 Erv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~~~qls~LkqELe~~K~aLeesn~ 582 (678)
-.--|+.|..|+..++ .|.+.|..-++|+..+|..|+|.|..+-+.++....
T Consensus 48 AaTCNqTV~tL~~SL~--------------~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 48 AATANHTVMALMASLD--------------AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667888988887765 566666777999999999999999888877776543
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.83 E-value=3.6e+02 Score=29.05 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHH
Q 005767 375 KSLNEAVGQLVKEKEHIVSLLRS 397 (678)
Q Consensus 375 k~Le~~V~~L~kEn~dI~sLLR~ 397 (678)
..|.+.|..+.+-+.+|.++.+.
T Consensus 70 e~L~~~L~~~s~s~~~~~~y~~~ 92 (390)
T 1deq_A 70 NKLRDSLFNYQKNSKDSNTLTKN 92 (390)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555555555555555555443
No 61
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.75 E-value=73 Score=26.65 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005767 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (678)
Q Consensus 247 ~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (678)
++.++.+.+-+..|+.+|.+|+.++.+-.+.|.+|...|
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888888888776666666666665444
No 62
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=26.79 E-value=1.7e+02 Score=24.31 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=29.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-------Hhhchh--hhchhhHHhhhhHHHHHHHHH
Q 005767 261 DEKVAEIESQGLELRQLVNEYED-------KLKNLE--SHRPLLVDQLNYVSKIHDQVD 310 (678)
Q Consensus 261 e~ki~ele~E~~~Lk~~v~e~e~-------kl~~~e--~~r~lL~dql~~v~~ihd~L~ 310 (678)
..|+..|..|..++.+.+..+|. ||+..+ -|.+- .+...++.+|.++||
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e-~e~~~l~~~I~~ILY 65 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENE-GENDPVLQRIVDILY 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG-GGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHh
Confidence 34555566677777777777777 887777 11110 123345666666666
No 63
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.63 E-value=1.9e+02 Score=22.69 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005767 505 HRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKA 543 (678)
Q Consensus 505 ~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKe 543 (678)
....||.+||.+-..+..--.+|..+|.....|+..|+.
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888777777777777777777777777764
No 64
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.44 E-value=3.1e+02 Score=23.60 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005767 495 HLEAQAKELSHRMKRIEELE 514 (678)
Q Consensus 495 l~e~QaKeIa~~~~~IkeLE 514 (678)
....-..+|..+.++|+-||
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33333334444444444333
No 65
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.51 E-value=1e+02 Score=24.72 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=16.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhchhhh
Q 005767 261 DEKVAEIESQGLELRQLVNEYEDKLKNLESH 291 (678)
Q Consensus 261 e~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~ 291 (678)
-.++.+++.++..|.+.+.+|..++..|+..
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544433
No 66
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.01 E-value=89 Score=34.12 Aligned_cols=82 Identities=24% Similarity=0.284 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-----------------HHHHHH
Q 005767 503 LSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEF-----------------VAQLSS 565 (678)
Q Consensus 503 Ia~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAcElEaeAGkaveqE~-----------------~~qls~ 565 (678)
|...+..|..|+++-+++-+--+.|...-.+||++..|-+...+-.++.-...++++ ..+...
T Consensus 358 l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~ 437 (575)
T 2i1j_A 358 LLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRR 437 (575)
T ss_dssp HHHHHHC-------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555677777777777777777778888888887765444433322222221 112345
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 005767 566 LKQELEEAKQALSESEKKL 584 (678)
Q Consensus 566 LkqELe~~K~aLeesn~KL 584 (678)
|+++|..++.++..+..+|
T Consensus 438 ~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 438 LQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp ----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666554444
No 67
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.56 E-value=2.1e+02 Score=24.62 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=56.5
Q ss_pred HHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhhHHhhhhHHHHHHHHHH
Q 005767 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKIHDQVDD 311 (678)
Q Consensus 233 Ea~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e-~~r~lL~dql~~v~~ihd~L~~ 311 (678)
|.-...+..++-.+.+-+-.+ +-.+|...|.++++.+.+..+.|...+..++++. ..|+-+.-.+..+.+--+.|-.
T Consensus 11 E~df~~l~~~i~~kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666655444 2367788999999999999999999999999998 6677777777766655444443
Q ss_pred HH
Q 005767 312 II 313 (678)
Q Consensus 312 vi 313 (678)
=+
T Consensus 89 el 90 (102)
T 1vcs_A 89 DF 90 (102)
T ss_dssp HT
T ss_pred HH
Confidence 33
No 68
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.16 E-value=6.7e+02 Score=26.69 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 467 IVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (678)
Q Consensus 467 ~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLEE 515 (678)
-.+++..+|..|...+-..-..+..|+..+..+.++|.++...|..|+.
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455566666776666666666777777777777777777777777764
No 69
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=23.98 E-value=4.4e+02 Score=29.41 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=61.3
Q ss_pred hhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhh
Q 005767 220 QRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL 299 (678)
Q Consensus 220 qrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e~~r~lL~dql 299 (678)
||=-.+-=|.+++++.|+.++--|...+.++...+..+..+++.-..++..+.++++++.+-..|. +....+-|.+
T Consensus 356 QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~----dE~~aIKDAV 431 (602)
T 1cii_A 356 QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQ----DELKATKDAI 431 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhh----hHHHHHHHHH
Confidence 553344457788999998888888888888888888887777666767777777777766665554 2334455666
Q ss_pred hhHHHHHHHHHHH
Q 005767 300 NYVSKIHDQVDDI 312 (678)
Q Consensus 300 ~~v~~ihd~L~~v 312 (678)
.+.+-+++.+.+-
T Consensus 432 kfTAdFykkIsEk 444 (602)
T 1cii_A 432 NFTTEFLKSVSEK 444 (602)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666555555443
No 70
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.89 E-value=1.8e+02 Score=23.25 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 005767 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLE 497 (678)
Q Consensus 462 salE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e 497 (678)
..++.-++.+..+..+|+..+..++.|...|+.++.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777788888888888888888888777654
No 71
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.86 E-value=2.8e+02 Score=23.61 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=51.5
Q ss_pred HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhch--h-hhchhhHHhhhhHHHHHHH
Q 005767 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL--E-SHRPLLVDQLNYVSKIHDQ 308 (678)
Q Consensus 234 a~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~--e-~~r~lL~dql~~v~~ihd~ 308 (678)
.-...+-.++-.+.+-+-++. -.+|...|.++++.+.++.+.|...+..++|+ - +.|+-+.-.+..+.+--+.
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~--ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~ 83 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQP--LSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQS 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555554443332 34788899999999999999999999999999 5 5687777777766654444
No 72
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=23.43 E-value=57 Score=33.71 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=25.7
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 005767 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN 287 (678)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~ 287 (678)
||.+||++|..+ .+.+..|...+...+.+|. .|+++|..++.++..
T Consensus 5 ~~~~lE~~Il~~-------~~~i~~L~~~l~~~~~ki~-------~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 5 EIMKYEASILTH-------DSSIRYLQEIYNSNNQKIV-------NLKEKVAQLEAQCQE 50 (319)
T ss_dssp -----CTTTTTH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhhCh-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 788999999444 4555666555555566666 666666667666543
No 73
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.32 E-value=1.9e+02 Score=28.47 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=12.4
Q ss_pred hhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHH
Q 005767 204 IDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENL 253 (678)
Q Consensus 204 ~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l 253 (678)
+|+-++-.+-+.+||++.. +.|+.|-.-+..|..++..|.++++.|
T Consensus 1 md~~~~YK~~~q~ql~~ad----~LV~~L~~En~~L~~ql~~k~~ei~~L 46 (190)
T 4emc_A 1 MDPLTVYKNSVKQQIDSAD----LLVANLVNENFVLSEKLDTKATEIKQL 46 (190)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677778887765 334555544444444444444444433
No 74
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.30 E-value=2.4e+02 Score=24.25 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=33.1
Q ss_pred hhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhch
Q 005767 209 KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (678)
Q Consensus 209 k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~ 288 (678)
|=|.+.||.|.|-.-+| .|+-+-.+|+-.=.+-++ .-|..+++|...|...|..|..|..+|
T Consensus 11 KLRrrl~E~~~q~qaEl--------~sLrrT~~EL~~G~~KL~----------~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAEL--------NALKRTEEDLKKGHQKLE----------EMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHH--------HHHHHHHHHHHhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778877766544 245444555544444443 344455555555555555555554444
Q ss_pred h
Q 005767 289 E 289 (678)
Q Consensus 289 e 289 (678)
+
T Consensus 73 ~ 73 (78)
T 3iv1_A 73 S 73 (78)
T ss_dssp H
T ss_pred H
Confidence 3
No 75
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.29 E-value=3.9e+02 Score=23.59 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=30.7
Q ss_pred ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 005767 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e 289 (678)
+++|--+|.+|.-|+..--+...+|+.++.+-+..-. .++..++..|..+|..|..+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555555444445555555544443322 255566667777766664443
No 76
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.08 E-value=2.7e+02 Score=23.95 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=9.8
Q ss_pred hhhchhHHHHHHHhhhhhhhhhhhH
Q 005767 189 VIKRTNEIVEELVGQIDATAKSRND 213 (678)
Q Consensus 189 v~KR~neiveel~~Q~da~~k~rn~ 213 (678)
+=.|..|++..-=.-+++-.+..++
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~E 36 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEED 36 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333444444333334443333333
No 77
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.03 E-value=2.7e+02 Score=23.99 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=51.3
Q ss_pred hHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhhHHhhhhHHHH
Q 005767 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKI 305 (678)
Q Consensus 232 LEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e-~~r~lL~dql~~v~~i 305 (678)
.|.-...+..++-.+.+-+-.+. +-.+|...|.++++.+.+..+.|+..|..++++. +.|+-+.-.+..+.+=
T Consensus 20 YE~df~~l~~~i~~kl~~i~~~~-~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~d 93 (102)
T 2qyw_A 20 LHEIFRGLLEDLQGVPERLLGTA-GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKD 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34445555566666666543221 1267788899999999999999999999999998 6677666666655543
No 78
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=22.86 E-value=3e+02 Score=22.08 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhch
Q 005767 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (678)
Q Consensus 251 e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~ 288 (678)
+.|...+......+.....|+.+||-.|..|+..|.++
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444555556667788998999998888543
No 79
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.56 E-value=3.4e+02 Score=22.62 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhHHHHHHHH
Q 005767 37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQL 116 (678)
Q Consensus 37 ael~~er~~r~aae~s~~e~~~~~~rlkala~ea~~krde~~r~rd~a~r~ke~~~~~~~~~s~el~~v~~~~de~~kq~ 116 (678)
+|++.=+..+.+.|.+.++.+.++..=-.=++..| +.-=.++..-|.+++.|+
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i---------------------------~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAVEAANYQDTI---------------------------GRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
Confidence 35666666777778888887777754222222222 211124555677787777
Q ss_pred HHHhhhhcCCccchhhhhhhhhhhhHhhhhhhhhhh
Q 005767 117 DEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV 152 (678)
Q Consensus 117 d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~ 152 (678)
.+--. .-..+-+|-.||.|-.++|=
T Consensus 54 ~EYq~-----------LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 54 REYQD-----------LLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHH-----------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-----------HHHHHHhhHHHHHHHHHHHc
Confidence 66321 22355679999999999885
No 80
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.47 E-value=2.4e+02 Score=22.33 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005767 506 RMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (678)
Q Consensus 506 ~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAc 545 (678)
...+|.+|+.+-..+..--..|-.+|.....|+..|+..+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788887766666666677777777777777777543
No 81
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.03 E-value=5e+02 Score=24.43 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005767 497 EAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (678)
Q Consensus 497 e~QaKeIa~~~~~IkeLEErErv~~enVEeL~~dIkaaEeEi~RWKeAc 545 (678)
+.-..+|..++.+.|+-|-|.-|+-.+|--|=.+|..+|.++..||...
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~ 121 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY 121 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677778888899999999999999999999999999998653
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.67 E-value=3.2e+02 Score=30.59 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=32.2
Q ss_pred eeeh-hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 005767 227 IEVS-ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (678)
Q Consensus 227 IEVS-qLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~ 269 (678)
-||| +|+-.|..|+++|-..-+-+-.|+..|.+---+|..||.
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667 888999888888888887777777777666666665555
No 83
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.39 E-value=1.2e+02 Score=22.78 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005767 524 VEGLMLDIAAAEEEISRWKAA 544 (678)
Q Consensus 524 VEeL~~dIkaaEeEi~RWKeA 544 (678)
||+|+-.-...+.|+.|-++-
T Consensus 10 vEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 10 LEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999998764
No 84
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=21.04 E-value=3.1e+02 Score=21.60 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=32.6
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005767 453 EEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESS 490 (678)
Q Consensus 453 ee~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~ 490 (678)
..+++..+|+.+.+.-..++..+..|...+..+.+.+.
T Consensus 10 ~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~ 47 (99)
T 3zbh_A 10 TPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWE 47 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44679999999999999999999999999998876654
No 85
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.01 E-value=4.4e+02 Score=23.35 Aligned_cols=59 Identities=29% Similarity=0.417 Sum_probs=34.5
Q ss_pred eehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 005767 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 228 EVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e 289 (678)
|+++|--+|.+|.-|+.+--+...+|+.++.+-+.... .++..++..|..+|..|..+.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC---MQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555555666665555544332 255567777777777765544
No 86
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.59 E-value=4.4e+02 Score=23.23 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 005767 564 SSLKQELEEA 573 (678)
Q Consensus 564 s~LkqELe~~ 573 (678)
..|++.++.+
T Consensus 72 ~~lrK~lD~~ 81 (119)
T 3ol1_A 72 QSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhhcccHH
Confidence 3344444433
No 87
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=20.53 E-value=1.2e+02 Score=24.79 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHHHHHHhH
Q 005767 609 DTRASRLRDRVEELSHQL 626 (678)
Q Consensus 609 D~RaA~LReRIEELtRQL 626 (678)
-.+||.+|++|..|.+++
T Consensus 42 FE~AA~lRD~I~~L~~~l 59 (63)
T 1e52_A 42 FEEAAQIRDQLHQLRELF 59 (63)
T ss_dssp HHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357889999999998875
No 88
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.39 E-value=3.7e+02 Score=24.11 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=29.2
Q ss_pred chhhHHhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 005767 452 TEEDEIYNLAGALENI----------VKASQLEIVELRHSVEELR 486 (678)
Q Consensus 452 ~ee~Ev~sLAsalE~~----------mK~~qlEI~eLr~sleEsR 486 (678)
+|..-|++|-..|++. ++.++-||..|.+.|.+++
T Consensus 43 TCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 43 SCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899998888877 7888888888888888776
No 89
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.20 E-value=1.6e+02 Score=24.59 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=29.5
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 005767 244 AKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN 287 (678)
Q Consensus 244 a~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~ 287 (678)
..|...+..|+..+.+-+.....+..|..+|++.|..|..++..
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666677777888888777766643
Done!