Query 005767
Match_columns 678
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 06:55:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005767.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005767hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 56.1 17 0.0012 29.1 7.4 79 212-290 12-92 (110)
2 d1e52a_ a.2.9.1 (A:) C-termina 29.2 32 0.0023 25.8 4.4 39 566-627 15-53 (56)
3 d1vcsa1 a.47.2.1 (A:8-96) Vesi 21.7 88 0.0064 24.7 6.1 64 239-304 10-74 (89)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 14.0 2.7E+02 0.02 21.7 8.9 28 273-300 69-96 (107)
5 d1gqea_ e.38.1.1 (A:) Polypept 12.5 3.7E+02 0.027 25.5 9.2 84 229-312 8-110 (362)
6 d1lvfa_ a.47.2.1 (A:) Syntaxin 10.2 3.3E+02 0.024 21.4 6.8 56 455-514 38-93 (106)
7 d1o3ua_ a.24.16.3 (A:) Hypothe 10.1 1.1E+02 0.0083 24.6 3.9 36 570-606 4-39 (126)
8 d1wa8b1 a.25.3.1 (B:602-695) E 9.8 2.1E+02 0.015 21.5 5.2 35 456-490 9-43 (94)
9 d2p0ta1 a.290.1.1 (A:22-169) U 9.3 4.7E+02 0.034 21.9 7.8 75 340-417 61-140 (148)
10 d1x4ta1 a.2.15.1 (A:7-86) Pre- 8.8 2.3E+02 0.017 22.6 5.1 42 353-394 25-68 (80)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=56.12 E-value=17 Score=29.14 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=42.9
Q ss_pred hHHHHHhhhhcceeeee-ehhhHHHhhhchHHHhhhhhhHHHHHHHHHH-hHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 005767 212 NDVREQMEQRNFEIAIE-VSELEATISGLREEVAKKSSFIENLEKSLIE-KDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (678)
Q Consensus 212 n~aReqmeqrny~iAIE-VSqLEa~is~lr~eva~k~s~~e~l~k~~~e-ke~ki~ele~E~~~Lk~~v~e~e~kl~~~e 289 (678)
+..+..+..|||.+.|. |-.|......+.-++..--+.--.++|++.. +-....++-.++..|++.+..++..++.++
T Consensus 12 e~v~~~l~~R~~~~~ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~ 91 (110)
T d1seta1 12 EVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKE 91 (110)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899987531 2222222222222232222333334444422 223345666688888888888888886665
Q ss_pred h
Q 005767 290 S 290 (678)
Q Consensus 290 ~ 290 (678)
.
T Consensus 92 ~ 92 (110)
T d1seta1 92 A 92 (110)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=29.23 E-value=32 Score=25.81 Aligned_cols=39 Identities=23% Similarity=0.475 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhHh
Q 005767 566 LKQELEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLRLADTRASRLRDRVEELSHQLE 627 (678)
Q Consensus 566 LkqELe~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLkLAD~RaA~LReRIEELtRQLE 627 (678)
|.+.+..++..|..+-.+|.|- .||.+|++|..|.++|.
T Consensus 15 l~k~i~~Le~~M~~aa~~l~FE-----------------------~AA~~RD~I~~l~~~l~ 53 (56)
T d1e52a_ 15 LQQKIHELEGLMMQHAQNLEFE-----------------------EAAQIRDQLHQLRELFI 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH-----------------------HHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHH-----------------------HHHHHHHHHHHHHHHHH
Confidence 4456777778888888888873 57899999999999874
No 3
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.73 E-value=88 Score=24.68 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=47.9
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhhHHhhhhHHH
Q 005767 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSK 304 (678)
Q Consensus 239 lr~eva~k~s~~e~l~k~~~eke~ki~ele~E~~~Lk~~v~e~e~kl~~~e-~~r~lL~dql~~v~~ 304 (678)
+-.++..|.+-+-++ +-.+|...|+++++.+.+..+.|+..+..++++- +.|.-+.-.|..+..
T Consensus 10 l~a~i~~kl~~i~~~--~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~ 74 (89)
T d1vcsa1 10 LTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQ 74 (89)
T ss_dssp HHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344445555444333 3467899999999999999999999999999998 677777766666653
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.04 E-value=2.7e+02 Score=21.65 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhchhhhchhhHHhhh
Q 005767 273 ELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (678)
Q Consensus 273 ~Lk~~v~e~e~kl~~~e~~r~lL~dql~ 300 (678)
.|+.+++.++..++.++.+-..|-+.++
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~ 96 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444444443
No 5
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=12.48 E-value=3.7e+02 Score=25.52 Aligned_cols=84 Identities=14% Similarity=0.297 Sum_probs=0.0
Q ss_pred ehhhHHHhhhchH--HHhhhhhhHHHHHHHHHHhH-----HHHHHHHHhHHHHHHHHHHHHHHhhchh------------
Q 005767 229 VSELEATISGLRE--EVAKKSSFIENLEKSLIEKD-----EKVAEIESQGLELRQLVNEYEDKLKNLE------------ 289 (678)
Q Consensus 229 VSqLEa~is~lr~--eva~k~s~~e~l~k~~~eke-----~ki~ele~E~~~Lk~~v~e~e~kl~~~e------------ 289 (678)
+++|...+..||. ++..+...++.|++.++.-+ .+...+.+|...|+..|+.|+.....++
T Consensus 8 i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~ee 87 (362)
T d1gqea_ 8 IQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEA 87 (362)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred hhchhhHHhhhhHHHHHHHHHHH
Q 005767 290 SHRPLLVDQLNYVSKIHDQVDDI 312 (678)
Q Consensus 290 ~~r~lL~dql~~v~~ihd~L~~v 312 (678)
.-..++-+....+..+...+..+
T Consensus 88 ~deel~~e~~~~l~~l~~~l~~l 110 (362)
T d1gqea_ 88 DDEETFNEAVAELDALEEKLAQL 110 (362)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHH
No 6
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.17 E-value=3.3e+02 Score=21.39 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=42.8
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005767 455 DEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (678)
Q Consensus 455 ~Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~~Lq~l~e~QaKeIa~~~~~IkeLE 514 (678)
.|+..+..-|.+.++++.-.+.+|..++.-+....++++. -..+|..+...|....
T Consensus 38 ~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l----~~~ei~~Rr~fi~~~~ 93 (106)
T d1lvfa_ 38 EEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNL----DATELSIRKAFITSTR 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCC----CHHHHHHHHHHHHHHH
Confidence 5688889999999999999999999999988877776642 1445666666655544
No 7
>d1o3ua_ a.24.16.3 (A:) Hypothetical protein TM0613 {Thermotoga maritima [TaxId: 2336]}
Probab=10.14 E-value=1.1e+02 Score=24.56 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHhhh
Q 005767 570 LEEAKQALSESEKKLGFKEETAAAAMTARDAAEKSLR 606 (678)
Q Consensus 570 Le~~K~aLeesn~KLKlKEElAaAAMAAr~AAEkSLk 606 (678)
|++++.+|..|..=+.- .....|+--||-|+|++||
T Consensus 4 l~~A~~dL~~A~~~l~~-g~y~~a~f~~qQavEk~lK 39 (126)
T d1o3ua_ 4 MDAAKDDLEHAKHDLEH-GFYNWACFSSQQAAEKAVK 39 (126)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHHHH
Confidence 55666666666644432 2367788899999999998
No 8
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.78 E-value=2.1e+02 Score=21.49 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=30.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005767 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESS 490 (678)
Q Consensus 456 Ev~sLAsalE~~mK~~qlEI~eLr~sleEsRsE~~ 490 (678)
.|-+.|+.|..+.+.++..+.+|+..+..+++-+.
T Consensus 9 ~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l~~~W~ 43 (94)
T d1wa8b1 9 GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWG 43 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47778899999999999999999999999887664
No 9
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=9.32 E-value=4.7e+02 Score=21.93 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh-----hhhHHHHHHHHhhhhcccCCCCchhhH
Q 005767 340 ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE-----KEHIVSLLRSALSKRMSVDPSSKTNEL 414 (678)
Q Consensus 340 e~l~asl~~~~sI~eLa~ev~~K~~~~~E~k~ke~k~Le~~V~~L~kE-----n~dI~sLLR~AL~EKea~d~~qk~s~l 414 (678)
+.|.+.+..+..-+.......+.+..|.+.==. +=.+.+..++.+ -++++.|+|.|-.|+.+..|+.-..+|
T Consensus 61 e~i~~~l~~~~~~~~~~~~~~h~lE~wRdrLi~---~~~~al~e~~~~~P~~DrQ~LRqLiR~A~kE~~~~k~~k~~R~L 137 (148)
T d2p0ta1 61 EAILVLLDQLDASTRQYNERFHNLERWRDRLIA---GDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKI 137 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 346677777777777777777888888764321 112345555544 578999999999999987777777888
Q ss_pred HHH
Q 005767 415 FKV 417 (678)
Q Consensus 415 lQi 417 (678)
|++
T Consensus 138 F~~ 140 (148)
T d2p0ta1 138 FKY 140 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 10
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.80 E-value=2.3e+02 Score=22.55 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHHHHHh--hHHHHhhHHHHHHHHHHhhhhHHHH
Q 005767 353 YQLTRIVVEKTRDLVQK--KSREVKSLNEAVGQLVKEKEHIVSL 394 (678)
Q Consensus 353 ~eLa~ev~~K~~~~~E~--k~ke~k~Le~~V~~L~kEn~dI~sL 394 (678)
.++.+++..|+.....- ....+++|+..+..|.+|+.+--.=
T Consensus 25 ~~iikEI~~kvs~Iqn~~L~e~~IRdLNDeINkL~reK~~WE~r 68 (80)
T d1x4ta1 25 RQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888877653 5788999999999999999875443
Done!