BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005768
(678 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2L5|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens
GN=TRAPPC8 PE=1 SV=2
Length = 1435
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 155/695 (22%), Positives = 266/695 (38%), Gaps = 126/695 (18%)
Query: 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLL 88
+ V EP+ V++ F+NPL++ + ++++SL+ + + D D N+E +L+
Sbjct: 748 LAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKFHPK-DFSGKD---------NEEVKQLV 797
Query: 89 TTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS-------- 140
T+ EM + +SE I+ G E+ + +L + P G L I+GV + L
Sbjct: 798 TSEPEM---IGAEVISEFLIN--GEESKVARLKLFPHHIGELHILGVVYNLGTIQGSMTV 852
Query: 141 ---GSLVGVYNFESNL---VKKK------------IAKGRRKVKSSPSNDLKFIVIKSLP 182
G+L G + + +L V+ K + + VK P L I+ + +P
Sbjct: 853 DGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIITEEMP 912
Query: 183 KLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN---------- 232
LE P G++R +E N S + LK+ P F + G
Sbjct: 913 LLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNTAVLTPLSP 972
Query: 233 ---------RDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAV-FSFPEGISIQGETPLL 282
+ +T C +++A G P+ + P+ + + G + L
Sbjct: 973 SASENCSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLPDTVLLPGASVQL 1032
Query: 283 WPLWYRAA-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSS- 340
P+W R G ++ YYE I++R+LR + SLNV + +S
Sbjct: 1033 -PMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLNVRATVCRSNSL 1091
Query: 341 -----RLQQYLVRMDVVNQTSSE----NFQIHQLSSVGHQWE----ISLLQPFDSIFPS- 386
R LV +DV N +SE F I Q+SS W+ ++L + D+ S
Sbjct: 1092 ENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNLSENKDTKLASR 1151
Query: 387 -ESLFAGQALSCFFMLKNRGESST-SSDDTSSPSRLLGSD---VSLQGTADTLFDISGSP 441
+ F +A+ C + E++T SS+ + + G++ S AD + S
Sbjct: 1152 EKGKFCFKAIRC-----EKEEAATQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSE 1206
Query: 442 LADFHAH-------------ERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFS 488
L AH RL+Q+ S+ D N V I DS I + Q
Sbjct: 1207 LKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIV--ILWKAYVVEDSKQLILEGQ---- 1260
Query: 489 HHACHCSILGKTPITW--LVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDS 546
HH +GK ++ + P F F N+ ++ S + + +
Sbjct: 1261 HHVI-LRTIGKEAFSYPQKQEPPEMELLKF---FRPENITVSSRPSVEQLSSLIKTSLHY 1316
Query: 547 PSSSG----QTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSP 602
P S Q S P + + S DV V+ D++ + P LE
Sbjct: 1317 PESFNHPFHQKSLCLVPVTLLLSNCSKA--DVDVIVDLRHKTTSP-------EALEIHGS 1367
Query: 603 FIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDL 637
F W G + ++L+ + +K C G Y+L
Sbjct: 1368 FTWLGQTQYKLQLKSQEIHSLQLKACFVHTGVYNL 1402
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 469 SQPSKSDSDSGISDPQHLFSHHACHCSIL---GKTPITWLVDGPRTLHHNFNASFCEVNL 525
S P S + +SD HLFS ++ H S + GK+ ++L PR ++ N N
Sbjct: 159 SSPENMTSFNPMSDSSHLFSDYSKHNSTILANGKSGTSYLTSTPRRIYDNTNMINIPEET 218
Query: 526 KM--TIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVT 583
K T YN ++ + FD+P SSG TSP + + + D K+
Sbjct: 219 KNIPTCYNGNNHVPSESI--FDNPLSSGANRRMTSPGHKIQPSTCSDMLFTLLAKDNKIE 276
Query: 584 SQLP 587
+++P
Sbjct: 277 AEIP 280
>sp|A6V4J2|UVRC_PSEA7 UvrABC system protein C OS=Pseudomonas aeruginosa (strain PA7)
GN=uvrC PE=3 SV=1
Length = 608
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 186 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 245
GL+ P YA D+RH V+ L+ +S+ L + + ++ A L+
Sbjct: 181 GLVGP---EEYAEDVRHSVMFLEGRSNALADELNTGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 246 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 296
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 297 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 345
L+ Y + + L+ MH + VL + L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVMHEDFPVLVAAIAEARGRQLEISYRVRGTRARWQQ- 355
Query: 346 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 405
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 406 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 457
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|Q02N77|UVRC_PSEAB UvrABC system protein C OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=uvrC PE=3 SV=1
Length = 608
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 186 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 245
GL+ P YA D+RH V+ L+ +S+ L + + + ++ A L+
Sbjct: 181 GLVSP---EEYAEDVRHSVMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 246 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 296
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 297 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 345
L+ Y + + L+ H + VL S L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQ- 355
Query: 346 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 405
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 406 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 457
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|B7V4X6|UVRC_PSEA8 UvrABC system protein C OS=Pseudomonas aeruginosa (strain LESB58)
GN=uvrC PE=3 SV=1
Length = 608
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 186 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 245
GL+ P YA D+RH V+ L+ +S+ L + + + ++ A L+
Sbjct: 181 GLVSP---EEYAEDVRHSVMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 246 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 296
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 297 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 345
L+ Y + + L+ H + VL S L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQ- 355
Query: 346 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 405
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 406 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 457
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|Q9I0Q1|UVRC_PSEAE UvrABC system protein C OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=uvrC PE=3
SV=1
Length = 608
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 186 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 245
GL+ P YA D+RH V+ L+ +S+ L + + + ++ A L+
Sbjct: 181 GLVSP---EEYAEDVRHSVMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 246 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 296
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 297 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 345
L+ Y + + L+ H + VL S L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQ- 355
Query: 346 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 405
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 406 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 457
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|O74755|PST3_SCHPO Paired amphipathic helix protein pst3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pst3 PE=3 SV=1
Length = 1154
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 508 GPRTLHHNFNASFCEVNLKMTIYNSSDAAMF------VRVNTF----DSPSSSGQTSEAT 557
G LH FN FC+ NL++ + F V +N++ D S S + + T
Sbjct: 1059 GSGRLHSLFNEHFCKSNLQLFFSTDTYVIFFEPNTENVYINSYNLWVDQSSQSKKQNRTT 1118
Query: 558 SPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQ 590
+ R + S GW TDIK S+ L+Q
Sbjct: 1119 NWRRWLESD--EGWRKSKANTDIKFFSETTLDQ 1149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,010,008
Number of Sequences: 539616
Number of extensions: 9858051
Number of successful extensions: 25342
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 25294
Number of HSP's gapped (non-prelim): 62
length of query: 678
length of database: 191,569,459
effective HSP length: 124
effective length of query: 554
effective length of database: 124,657,075
effective search space: 69060019550
effective search space used: 69060019550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)