Query 005768
Match_columns 678
No_of_seqs 139 out of 171
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 13:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1938 Protein with predicted 100.0 1.5E-38 3.2E-43 362.8 -2.2 475 6-629 468-960 (960)
2 PF08626 TRAPPC9-Trs120: Trans 100.0 1.6E-26 3.5E-31 284.1 42.2 321 22-405 639-1010(1185)
3 KOG1953 Targeting complex (TRA 99.6 6.5E-13 1.4E-17 152.6 25.9 288 26-358 685-1002(1235)
4 PF07919 Gryzun: Gryzun, putat 99.2 1.8E-06 3.9E-11 99.4 45.5 248 29-305 22-283 (554)
5 PF06159 DUF974: Protein of un 97.7 0.0054 1.2E-07 64.0 20.9 186 191-406 3-210 (249)
6 COG1470 Predicted membrane pro 97.2 0.02 4.3E-07 63.6 18.1 125 105-290 324-453 (513)
7 PF00927 Transglut_C: Transglu 96.2 0.066 1.4E-06 48.2 11.4 96 25-149 6-103 (107)
8 PF10633 NPCBM_assoc: NPCBM-as 95.5 0.044 9.6E-07 46.6 6.8 72 197-303 3-77 (78)
9 PF07705 CARDB: CARDB; InterP 95.3 0.11 2.5E-06 45.2 9.1 85 182-304 2-86 (101)
10 PF14874 PapD-like: Flagellar- 95.1 0.19 4.2E-06 44.5 9.9 86 182-305 2-90 (102)
11 KOG2625 Uncharacterized conser 94.8 0.13 2.8E-06 52.1 8.6 313 194-646 10-332 (348)
12 PF05753 TRAP_beta: Translocon 88.0 4.6 9.9E-05 40.3 10.4 97 179-308 18-117 (181)
13 PF01345 DUF11: Domain of unkn 86.4 2.9 6.2E-05 35.1 6.9 53 179-231 21-73 (76)
14 PF00635 Motile_Sperm: MSP (Ma 85.3 5.2 0.00011 35.5 8.5 54 198-290 17-70 (109)
15 PF12690 BsuPI: Intracellular 78.0 7 0.00015 33.8 6.2 73 522-637 1-80 (82)
16 PF14646 MYCBPAP: MYCBP-associ 75.3 22 0.00047 40.2 11.0 83 196-306 244-328 (426)
17 TIGR01451 B_ant_repeat conserv 74.4 6.8 0.00015 31.0 4.7 40 193-232 6-45 (53)
18 PF03896 TRAP_alpha: Transloco 71.5 65 0.0014 34.6 12.7 102 192-325 92-196 (285)
19 PF07705 CARDB: CARDB; InterP 69.1 67 0.0014 27.4 10.5 69 26-133 11-80 (101)
20 PF12584 TRAPPC10: Trafficking 68.4 18 0.00038 34.7 7.1 35 107-141 80-114 (147)
21 PF10633 NPCBM_assoc: NPCBM-as 66.9 43 0.00093 28.1 8.5 68 31-133 2-72 (78)
22 PF09478 CBM49: Carbohydrate b 66.6 16 0.00034 31.3 5.7 60 199-285 17-77 (80)
23 PRK05089 cytochrome C oxidase 66.5 34 0.00073 34.4 8.7 80 194-303 89-173 (188)
24 PF12735 Trs65: TRAPP traffick 65.3 44 0.00096 36.1 10.2 130 501-643 157-288 (306)
25 PF12690 BsuPI: Intracellular 65.1 39 0.00085 29.2 7.9 71 36-133 2-81 (82)
26 PF12742 Gryzun-like: Gryzun, 64.4 15 0.00031 29.8 4.6 41 600-640 15-55 (57)
27 PF13584 BatD: Oxygen toleranc 61.7 1.5E+02 0.0032 33.8 14.2 88 114-214 71-158 (484)
28 PTZ00128 cytochrome c oxidase 59.7 47 0.001 34.4 8.6 94 177-303 117-222 (232)
29 smart00809 Alpha_adaptinC2 Ada 56.9 1.2E+02 0.0026 26.6 9.9 74 198-306 17-90 (104)
30 PF04442 CtaG_Cox11: Cytochrom 56.2 25 0.00055 34.1 5.7 42 174-218 43-86 (152)
31 PF06030 DUF916: Bacterial pro 55.3 50 0.0011 30.7 7.3 78 522-631 28-105 (121)
32 PF14874 PapD-like: Flagellar- 54.0 1.1E+02 0.0023 26.8 9.1 71 23-130 9-80 (102)
33 COG1361 S-layer domain [Cell e 53.5 4E+02 0.0086 30.6 24.2 133 189-356 157-295 (500)
34 PRK13202 ureB urease subunit b 53.3 39 0.00084 30.7 5.9 75 192-289 12-86 (104)
35 PF04744 Monooxygenase_B: Mono 53.3 40 0.00086 37.2 7.1 87 184-289 249-335 (381)
36 KOG0439 VAMP-associated protei 51.7 59 0.0013 32.9 7.9 71 199-308 25-99 (218)
37 smart00769 WHy Water Stress an 51.2 52 0.0011 29.1 6.6 29 33-61 14-42 (100)
38 COG3175 COX11 Cytochrome oxida 51.0 66 0.0014 32.1 7.6 24 195-218 89-112 (195)
39 PF13584 BatD: Oxygen toleranc 50.4 4.3E+02 0.0093 30.1 19.7 100 108-214 187-303 (484)
40 TIGR03079 CH4_NH3mon_ox_B meth 50.0 53 0.0011 36.2 7.4 77 196-290 279-355 (399)
41 TIGR03769 P_ac_wall_RPT actino 50.0 14 0.0003 27.9 2.2 21 625-646 5-25 (41)
42 PF03168 LEA_2: Late embryogen 48.1 1.1E+02 0.0024 26.1 8.1 53 39-124 1-53 (101)
43 PF05753 TRAP_beta: Translocon 48.0 1.4E+02 0.0031 29.8 9.7 40 607-646 74-114 (181)
44 PF11614 FixG_C: IG-like fold 46.9 1.3E+02 0.0029 27.2 8.8 31 273-303 68-102 (118)
45 PF05506 DUF756: Domain of unk 46.7 65 0.0014 27.9 6.3 20 524-543 21-40 (89)
46 PF14796 AP3B1_C: Clathrin-ada 43.7 66 0.0014 31.0 6.3 27 195-221 81-107 (145)
47 PF13473 Cupredoxin_1: Cupredo 43.6 72 0.0016 28.3 6.3 27 611-639 66-92 (104)
48 KOG4386 Uncharacterized conser 42.6 94 0.002 35.9 8.1 88 498-646 690-777 (809)
49 PF06030 DUF916: Bacterial pro 39.8 1.4E+02 0.003 27.8 7.7 84 192-291 20-105 (121)
50 PF13598 DUF4139: Domain of un 38.5 1.6E+02 0.0035 31.4 9.2 76 519-632 240-316 (317)
51 PF00630 Filamin: Filamin/ABP2 37.0 1.7E+02 0.0036 25.3 7.5 32 30-61 17-48 (101)
52 TIGR00192 urease_beta urease, 36.8 1E+02 0.0023 27.8 6.0 72 194-289 14-85 (101)
53 PF12735 Trs65: TRAPP traffick 36.5 2.4E+02 0.0053 30.4 10.1 123 183-307 157-292 (306)
54 PF04425 Bul1_N: Bul1 N termin 34.4 2E+02 0.0044 32.8 9.2 121 170-290 133-271 (438)
55 cd00407 Urease_beta Urease bet 33.5 1.2E+02 0.0026 27.4 5.9 71 195-289 15-85 (101)
56 PF00699 Urease_beta: Urease b 32.0 1.2E+02 0.0026 27.5 5.5 71 195-289 14-84 (100)
57 PF11614 FixG_C: IG-like fold 30.9 2E+02 0.0042 26.1 7.2 30 603-633 59-88 (118)
58 KOG3620 Uncharacterized conser 29.4 2.3E+02 0.0051 36.0 9.0 101 23-128 689-800 (1626)
59 PRK13203 ureB urease subunit b 28.8 1.1E+02 0.0024 27.7 4.8 67 200-289 19-85 (102)
60 PF06483 ChiC: Chitinase C; I 27.3 2.9E+02 0.0062 27.7 7.8 37 265-301 118-154 (180)
61 PF06280 DUF1034: Fn3-like dom 26.8 1.2E+02 0.0025 27.4 4.9 23 104-126 60-82 (112)
62 PF02883 Alpha_adaptinC2: Adap 26.1 4.7E+02 0.01 23.3 9.1 77 196-307 21-102 (115)
63 PF06355 Aegerolysin: Aegeroly 24.8 2.8E+02 0.006 26.3 7.1 68 37-133 3-76 (131)
64 PRK13204 ureB urease subunit b 24.7 2.1E+02 0.0046 27.8 6.2 74 192-289 35-108 (159)
65 PRK13198 ureB urease subunit b 24.0 2.2E+02 0.0048 27.7 6.2 75 191-289 39-113 (158)
66 PF06159 DUF974: Protein of un 23.3 8.7E+02 0.019 25.4 22.8 147 27-222 7-158 (249)
67 PF06280 DUF1034: Fn3-like dom 23.1 1.6E+02 0.0035 26.4 5.1 27 605-631 56-82 (112)
68 PRK13205 ureB urease subunit b 22.1 2.3E+02 0.0051 27.5 5.9 71 194-288 14-84 (162)
69 PF00927 Transglut_C: Transglu 22.0 1.6E+02 0.0035 26.1 4.8 75 191-294 7-81 (107)
70 PF03173 CHB_HEX: Putative car 22.0 2.1E+02 0.0046 28.2 5.9 20 198-217 29-48 (164)
71 PRK13201 ureB urease subunit b 21.5 2.6E+02 0.0056 26.6 6.0 72 194-289 14-85 (136)
72 PF14742 GDE_N_bis: N-terminal 20.7 2.7E+02 0.0058 27.8 6.6 21 607-627 174-194 (194)
No 1
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-38 Score=362.78 Aligned_cols=475 Identities=20% Similarity=0.201 Sum_probs=320.7
Q ss_pred ccccccccccccccc-cccccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCccccccccc
Q 005768 6 STARSNWLELQSKLI-MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEE 84 (678)
Q Consensus 6 ~~~~~~wl~~~~~~~-~~~~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~ 84 (678)
.+|..+|...+-..- .....+.+++|+||++++.|++||||++++.+++++|+|+|..++....+|++.. ..
T Consensus 468 ~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~~~s~~~Na~s~-~~------ 540 (960)
T KOG1938|consen 468 FAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLDNLSGSSNAYSH-SQ------ 540 (960)
T ss_pred hcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhccccccccccccccc-cc------
Confidence 344455555554443 3444579999999999999999999999999999999999998543333333321 00
Q ss_pred ccccccccccCCCCCceeeeeeeEEEcCCceEEEEEEEEeCceEEEEEEEEEEEE------ceeeeeEEeeeeccccccc
Q 005768 85 SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGSLVGVYNFESNLVKKKI 158 (678)
Q Consensus 85 ~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L------~~~v~g~~~fe~kg~RL~~ 158 (678)
..|+.+ + . ....++.+.+.|+.++.|+.+|+..|.|+|.|..|+. .+.+.|...|+++|+|++.
T Consensus 541 -~~Pe~~-----~---~-s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as~yg~~~le~qgirl~~ 610 (960)
T KOG1938|consen 541 -SSPELI-----D---D-SAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAASVYGACSLEIQGIRLNN 610 (960)
T ss_pred -cChhhh-----h---h-hhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhhhhcccchhhhhcchhh
Confidence 111000 0 0 1136899999999999999999999999999999999 5689999999999999999
Q ss_pred cccc-ccccCCCCCceEEEEEcCCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCC
Q 005768 159 AKGR-RKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMT 237 (678)
Q Consensus 159 tk~r-~~~~y~pD~rL~~~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~ 237 (678)
++.+ +..+|.+|.||.+.+.+.+|+|+++|+++|+.+||||+|++.|+++|.|.+|+.+|++++++|+| . ..+.
T Consensus 611 ~~~~~~s~~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a~s~~~~-~--~l~n-- 685 (960)
T KOG1938|consen 611 TKLDVTSSKLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLAASWPYF-A--VLEN-- 685 (960)
T ss_pred hcccccccccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHHhcChhh-h--hccc--
Confidence 9974 48899999999998889999999999999999999999999999999999999999999999977 1 1111
Q ss_pred ccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEeeeCCCCccceEEEE
Q 005768 238 KEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLL 317 (678)
Q Consensus 238 ~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~~~~~~~~~R~l 317 (678)
.++.++..+. .++.. -...+-...+.++++..|.+|+++++++|+|++..+. - ..+|
T Consensus 686 -~s~~~~~~~~-a~i~~---~~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~-----------~w~r-- 742 (960)
T KOG1938|consen 686 -ESHRKGKMNA-ANISQ---QETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----K-----------PWLR-- 742 (960)
T ss_pred -ccccccccCH-hhhhh---hhhhhhccccCCCcccccCCCceeeeeeeEecccccc-----c-----------chHH--
Confidence 1122222210 01100 0000111222334678999999999999999985440 1 1122
Q ss_pred EEEEEEEEeceeEEEEEEeecccccceEEEEEEEEeCCCCCcEEEEEEEeeeeceEEeeeCCCcccCCCcccCccceeeE
Q 005768 318 RMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSC 397 (678)
Q Consensus 318 R~~~~v~V~pSL~vs~~~~~s~s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~~W~i~~l~~~~si~~~~~l~p~q~~~~ 397 (678)
+.+++. .+...|.....-..+++++.....|.....+.-....++.....++.+++
T Consensus 743 -----------------~~~~r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~~dvpsa~~~~~~~ls~ 798 (960)
T KOG1938|consen 743 -----------------QRQWRR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSENTDVPSAFTPSGKNLSR 798 (960)
T ss_pred -----------------hhhhhh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhhccCccccCccccccce
Confidence 111111 34444444445577788888877788887776666666777778999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCcccccceeecCCCCccccccCCcchhhhhhhhhcc---cc-ccCCCCceeEEEEecccc
Q 005768 398 FFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQ---RV-SQDDTNTVDFIFISQPSK 473 (678)
Q Consensus 398 ~f~~~~~~~~~~~~~~~~s~~~~~~sdv~l~~~~~~~~~~s~~P~~df~~~~r~~~---~~-~~~~~~~l~liv~W~a~~ 473 (678)
+++...++..+.++|.. .. + .++..+..++++|+......- .. .+..++ +|+++|+|++
T Consensus 799 ~~~~~~~~~~~~e~e~~------i~-------~--~~~~~s~~~~~~~~~~~st~~~~~~~~~~~~~~--~i~~~w~a~v 861 (960)
T KOG1938|consen 799 TSVSFIGRAVEIESEQP------IV-------A--RLVPLSQGETIKFFWLTSTTEVTPPAEIQSTMD--TIVILWKANV 861 (960)
T ss_pred eeeccccccccccccCC------cc-------c--ceeeccCCcchhhhhhccccccCCChhhccChh--hHHHhccccc
Confidence 99988888776554442 11 2 244556666777774422111 00 112333 3889999999
Q ss_pred cCCCCCCCCCccccceeecccc--ccCCCce--EEEE-eCCCeeeccCCC-CceeEeEEEEEEecCCceEEEEEEecCCC
Q 005768 474 SDSDSGISDPQHLFSHHACHCS--ILGKTPI--TWLV-DGPRTLHHNFNA-SFCEVNLKMTIYNSSDAAMFVRVNTFDSP 547 (678)
Q Consensus 474 ~~~~~~~~~~~~~Gq~h~~~~~--~~~~~pi--~~~l-~~p~~i~HdFs~-~~C~vpV~l~l~N~s~~~~~v~i~~~~~~ 547 (678)
++|++. . ..+| +.+-+.- ....+++ +.++ .-...|.| ++ .+|++|+++.++||+.+...|.+.+.
T Consensus 862 v~~eg~--~-~~~g-~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~--t~~~~~~~p~t~~~~n~~~~~~~v~~~~~--- 932 (960)
T KOG1938|consen 862 VNDEGV--T-RFIG-PFVKLKKLFKTDSCLSSLRISCETTSKEISH--TADHLCELPITLLISNNDLAWRPVSVSIE--- 932 (960)
T ss_pred ccccce--e-eecC-CcceehhhccCCcccccchhhhhhhhhhcch--hhhhhhcccchhhhcCCcccccccchhhh---
Confidence 999742 2 4455 2221110 0011222 2222 22344555 44 66666666666666665555555431
Q ss_pred CCCCCCccccCCCCCCCCCCCCCcccccccccceecccCCcccccccccccccCceEEeccccceEEeCCCceeEEEeEE
Q 005768 548 SSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKV 627 (678)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~w~g~~~~~~~l~p~~~~~i~l~~ 627 (678)
- -.|.|+++||.|+++++.+.++|+|
T Consensus 933 --------------------------------~----------------------~~w~~~~~~k~q~~~~~~~~~~m~~ 958 (960)
T KOG1938|consen 933 --------------------------------E----------------------SSWIGRPVYKQQIGILEEASLEMKW 958 (960)
T ss_pred --------------------------------h----------------------hcccCCcceeeeecccccceeeeEe
Confidence 0 0199999999999999999999999
Q ss_pred EE
Q 005768 628 CL 629 (678)
Q Consensus 628 ~~ 629 (678)
||
T Consensus 959 ~~ 960 (960)
T KOG1938|consen 959 KI 960 (960)
T ss_pred cC
Confidence 86
No 2
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=99.96 E-value=1.6e-26 Score=284.09 Aligned_cols=321 Identities=22% Similarity=0.207 Sum_probs=222.5
Q ss_pred ccccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCce
Q 005768 22 KKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSF 101 (678)
Q Consensus 22 ~~~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 101 (678)
...+...++|+||+++|.|+|+||++++|.|++|+|.++... |
T Consensus 639 ~~~~~~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv~-------------------------------------f 681 (1185)
T PF08626_consen 639 SSNKKEPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGVP-------------------------------------F 681 (1185)
T ss_pred cccccCccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCCc-------------------------------------c
Confidence 335668999999999999999999999999999999976222 1
Q ss_pred eeeeeeEEE-cCCceEEEEEEEEeCceEEEEEEEEEEEEceeeeeEEeee-------eccccccccccc--ccccC----
Q 005768 102 TLSEVDISL-GGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFE-------SNLVKKKIAKGR--RKVKS---- 167 (678)
Q Consensus 102 ~~~~~~i~L-~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L~~~v~g~~~fe-------~kg~RL~~tk~r--~~~~y---- 167 (678)
......+.| +|.+++.|+|.++|+++|.|+|+|+.+++.|... ...+. ++++.++....+ ...+.
T Consensus 682 es~~~s~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l 760 (1185)
T PF08626_consen 682 ESYPVSIVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCRE-EFFPIFKSEWGSIKGKKLKDKFRKGSRLDKPSPPL 760 (1185)
T ss_pred ccceeeeEecCCCcceEEEEEEEECccceEEEEEEEEEEccccc-ceecccCcccchhhhhhcccccccccccccccccc
Confidence 111245666 9999999999999999999999999999998533 22222 222222221111 11111
Q ss_pred ----CCCCceEEEEEcCCCeEEEEEecCC---ccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccc
Q 005768 168 ----SPSNDLKFIVIKSLPKLEGLIHPLP---ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEF 240 (678)
Q Consensus 168 ----~pD~rL~~~Vi~~~P~L~v~~~~lP---~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~ 240 (678)
.....|+++|+|++|+|++.+.+++ ..||+||.++++|+|+|.|.+|++.| .|+|.|++....+
T Consensus 761 ~~~~~~~~~l~i~VIp~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l--------~~sf~DS~~~~~~- 831 (1185)
T PF08626_consen 761 ESESPKTKSLSIKVIPPQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFL--------SFSFQDSTIEPLQ- 831 (1185)
T ss_pred cccccccCcceEEEECCCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceE--------EEEEEeccHHHHh-
Confidence 1346799999999999999998555 46999999999999999999999999 5556555432211
Q ss_pred hhhhhccc--cccccccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeC-C-CCeEEEEEEEEeeeC-CCCccceEE
Q 005768 241 PACLQKMT--NAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA-V-PGKISLSITIYYEMG-DVSSVIKYR 315 (678)
Q Consensus 241 p~~l~~~~--~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap-~-~G~~~l~~LfyYe~~-~~~~~~~~R 315 (678)
..+.++. ..|+|++ +..+...+.+++.....|+||+++++++++.|. . -.-....+.+.|... +..+.+++|
T Consensus 832 -~~l~~k~l~~~e~yel--E~~l~~~~~~~i~~~~~I~Pg~~~~~~~~~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~R 908 (1185)
T PF08626_consen 832 -KALSNKDLSPDELYEL--EWQLFKLPAFRILNKPPIPPGESATFTVEVDGKPGPIQLTYADIQLEYGYSGEDSSTFYTR 908 (1185)
T ss_pred -hhhhcccCChhhhhhh--hhhhhcCcceeecccCccCCCCEEEEEEEecCcccccceeeeeEEEEecccCCCCCCCeeE
Confidence 2222332 2244443 333444445776444499999999999999885 2 235667777877643 334678899
Q ss_pred EEEEEEEEEEeceeEEEE-EEeecc------------------------cccceEEEEEEEEeCCCCCcEEEEEEEeeee
Q 005768 316 LLRMHYNLEVLPSLNVSF-QISPWS------------------------SRLQQYLVRMDVVNQTSSENFQIHQLSSVGH 370 (678)
Q Consensus 316 ~lR~~~~v~V~pSL~vs~-~~~~s~------------------------s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~ 370 (678)
.+++.++|+|+||+++.- -+.|-. ....-.+|-+||.|.... .+.+. +..
T Consensus 909 ql~ipl~vtV~~slev~~~dilp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~clL~lDlrNsw~~-~~~v~-l~~--- 983 (1185)
T PF08626_consen 909 QLSIPLTVTVNPSLEVTRCDILPLNSDSVSSNSDSWISYITSLKSDVNDDSSDYCLLLLDLRNSWPN-PLSVN-LHY--- 983 (1185)
T ss_pred EEEEEEEEEEeceEEEeeeeEEecccccccccCcchhhhhhhhcccccCCCCCeEEEEEEEEecCCC-ceEEE-EEe---
Confidence 999999999999999986 344441 112336788999998766 33321 111
Q ss_pred ceEEeeeCCCcccCCCcccCccceeeEEEEEeecC
Q 005768 371 QWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 405 (678)
Q Consensus 371 ~W~i~~l~~~~si~~~~~l~p~q~~~~~f~~~~~~ 405 (678)
. .+.......+.||++.++.+-++|+.
T Consensus 984 ----~----~~~~~~~~~I~pg~t~Ri~vPi~Ri~ 1010 (1185)
T PF08626_consen 984 ----D----EDFSSSEITIEPGHTSRIIVPIKRIY 1010 (1185)
T ss_pred ----c----cCccccceEECCCCeEEEEEEecccc
Confidence 0 01111123688999999998888874
No 3
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.5e-13 Score=152.59 Aligned_cols=288 Identities=17% Similarity=0.144 Sum_probs=190.2
Q ss_pred ccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 005768 26 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 105 (678)
Q Consensus 26 ~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 105 (678)
+.-++|||||+.|.|+++||+.+++.+.||+|..+ ++.|....
T Consensus 685 ~~LvwVvdepvef~v~v~Np~~fdl~V~Di~L~~e-------------------------------------gvnF~~~~ 727 (1235)
T KOG1953|consen 685 SKLVWVVDEPVEFSVYVRNPLSFDLEVQDIHLETE-------------------------------------GVNFKCSH 727 (1235)
T ss_pred ceEEEEeCCceEEEEEEcCccceeEEEeeEEEEec-------------------------------------cccceeee
Confidence 36689999999999999999999999999999843 12344445
Q ss_pred eeEEEcCCce-EEEEEEEEeCceEEEEEEEEEEEEceeeeeEEeeeecccc-ccccc----ccccccCCCCCceEEEEEc
Q 005768 106 VDISLGGAET-ILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVK-KKIAK----GRRKVKSSPSNDLKFIVIK 179 (678)
Q Consensus 106 ~~i~L~p~Et-k~V~L~v~P~~~G~L~I~Gv~~~L~~~v~g~~~fe~kg~R-L~~tk----~r~~~~y~pD~rL~~~Vi~ 179 (678)
..+++.|... ++|+|..+|.+.|-|.|+|++.+..|...--|.|...|-. -+.-. +|-...|.+ +.+.+.|
T Consensus 728 vs~~~Ppns~~e~Irl~g~P~e~gpl~i~gy~v~cfg~~~~lq~f~~~gd~~~s~~v~~e~~kl~~vyl~---~~i~ilP 804 (1235)
T KOG1953|consen 728 VSFTMPPNSIAERIRLTGTPTETGPLHIVGYRVKCFGCEPILQYFYEAGDKHKSLHVYLEKSKLVNVYLR---SLITILP 804 (1235)
T ss_pred eeeecCcccccceEEEeccccccCceeeeeEEEEEeeechHHHHHHhcccccCCccceeccchhheeecc---cccccCC
Confidence 7999999977 9999999999999999999999999965544555555442 11111 122234443 4467889
Q ss_pred CCCeEEEEEe----cCCccccCccEEEEEEEEEecccccccceEEEecC------CceEEeccCCCCCccchh-------
Q 005768 180 SLPKLEGLIH----PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH------PRFLSIGNRDDMTKEFPA------- 242 (678)
Q Consensus 180 ~~P~L~v~~~----~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~------p~~~~fg~~~~~~~~~p~------- 242 (678)
.+|.+...-+ ++.--||+||...+.|+++|.|.+|+....+.... +...|+.+.++..-.++.
T Consensus 805 ~~P~~~l~~d~k~~s~~~ivy~Gq~~d~~Itv~N~s~~pin~~~v~~~~~i~q~~~p~~~~~~~e~~s~~~e~~~l~~~l 884 (1235)
T KOG1953|consen 805 LWPYFPLKKDLKTKSFDCIVYAGQPTDLSITVQNLSSGPINFAEVETGELIYQMLIPNTSFVEAEHISVLFEDSSLKAFL 884 (1235)
T ss_pred CcccchhhhcccCCCccEEEEcCCcceEEEEEEecCccceEEEEEeeccchhhcCCCceeecCchhhHhhccCccchhHH
Confidence 9996665433 23334999999999999999999999999999988 455666655432111111
Q ss_pred -hhhccc---cccccccCCCCCCCC-cceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEeeeCCCCc--cceEE
Q 005768 243 -CLQKMT---NAEQSVAGGNFNKMP-QAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSS--VIKYR 315 (678)
Q Consensus 243 -~l~~~~---~~e~~~~~~~~~~~~-~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~~~~~--~~~~R 315 (678)
+...+. ..+.++...+++.++ ..+++++ ..+.++++.+.-+-+||+-. ..-|...|.++-+.. .+.-|
T Consensus 885 ~ai~~~P~is~n~~~el~~~et~vP~fT~~sll--ip~s~s~~de~~Ipl~~~l~---~~efilrrs~eip~~D~e~fer 959 (1235)
T KOG1953|consen 885 QAIADKPVISANRLYELQFEETNVPTFTVESLL--IPLSPSERDEIHIPLRAPLS---QEEFILRRSVEIPEDDIEFFER 959 (1235)
T ss_pred HHHHhCCCCCcchhhhhhhhccCCCCccccccc--CCCCCCCCceEEEEeecccC---cceeEEEeeecCcccchHHHHH
Confidence 111111 111222222333332 2333443 37889999999999999721 233444454443322 24469
Q ss_pred EEEEEEEEEEeceeEEEEEEeecccccceEEEEEEEEeCCCCC
Q 005768 316 LLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSE 358 (678)
Q Consensus 316 ~lR~~~~v~V~pSL~vs~~~~~s~s~~~~~~l~v~V~N~~~~~ 358 (678)
.+|...-|.+.|++++++.-.-..-..-..+|.+++.|....+
T Consensus 960 ~~~~p~~i~i~p~v~~~aws~lp~ddpf~~lv~v~~~ns~~~d 1002 (1235)
T KOG1953|consen 960 RLRIPVSINISPRVDLKAWSALPEDDPFYCLVLVNFYNSFSED 1002 (1235)
T ss_pred hhcCcceEEecccccchhcccCCCCCceEEEEEEecccccCCc
Confidence 9999999999999999986321111123455666666655443
No 4
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.15 E-value=1.8e-06 Score=99.36 Aligned_cols=248 Identities=17% Similarity=0.224 Sum_probs=149.3
Q ss_pred eeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccc-cCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005768 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEME-SDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 107 (678)
Q Consensus 29 ~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 107 (678)
-..+||++.+.|.|++....||.+++|++..+ ....... .++. .......+ ..+...-.....+
T Consensus 22 ~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs--~~~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~ 86 (554)
T PF07919_consen 22 EGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFS--GSLYPIVISHSD-------ADASSADS------STSSGSPLSGSAD 86 (554)
T ss_pred CccCCCeEEEEEEEEcCCCCCEEeeEEEEEee--CCCCCceEeccc-------cccccccC------cccccccccCccc
Confidence 56799999999999999999999999999854 4322221 0000 00000000 0000011112469
Q ss_pred EEEcCCceEEEEEEEEeCc---eEEEEEEEEEEEEce-eeeeEEeeeecc------ccccccc-c-cccccCCCCCceEE
Q 005768 108 ISLGGAETILVQLMVTPKV---EGILKIVGVRWRLSG-SLVGVYNFESNL------VKKKIAK-G-RRKVKSSPSNDLKF 175 (678)
Q Consensus 108 i~L~p~Etk~V~L~v~P~~---~G~L~I~Gv~~~L~~-~v~g~~~fe~kg------~RL~~tk-~-r~~~~y~pD~rL~~ 175 (678)
+.|.|++++...+.+.|++ .|.++|.+|...+.. .+.....+.... ....... . ++...+.+-..-.+
T Consensus 87 L~l~p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 166 (554)
T PF07919_consen 87 LTLSPGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSI 166 (554)
T ss_pred eEEeecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEE
Confidence 9999999999999999999 999999999999982 111111111110 0000000 0 00111111144567
Q ss_pred EEEcCCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecC-CceEEeccCCCCCccchhhhhccccccccc
Q 005768 176 IVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH-PRFLSIGNRDDMTKEFPACLQKMTNAEQSV 254 (678)
Q Consensus 176 ~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~-p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~ 254 (678)
.|.+.=|.|++.+...-..+|.||...+.|+|.|......+........ +.........+.+.. .. +.
T Consensus 167 ~I~p~pp~v~I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~-- 235 (554)
T PF07919_consen 167 RILPRPPKVSIKLPNHKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDLS------QV---NW-- 235 (554)
T ss_pred EEECCCCCeEEEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccce------ec---cc--
Confidence 8899999999999666678999999999999999998777654333222 222221111111000 00 00
Q ss_pred cCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEeee
Q 005768 255 AGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM 305 (678)
Q Consensus 255 ~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~ 305 (678)
.........+..-.-+.|++|++.+.++.++....|...|.+-++|..
T Consensus 236 ---~~~~~~~~~~~~~~lg~l~~~~s~~~~l~i~~~~~~~~~L~i~~~Y~l 283 (554)
T PF07919_consen 236 ---DSDKDDEPLFLGIPLGELAPGSSITVTLYIRTSRPGEYELSISVSYHL 283 (554)
T ss_pred ---ccccccchhccCcccccCCCCCcEEEEEEEEeCCceeEEEEEEEEEEE
Confidence 000000011100012589999999999999977999999999999976
No 5
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=97.69 E-value=0.0054 Score=64.02 Aligned_cols=186 Identities=19% Similarity=0.229 Sum_probs=126.9
Q ss_pred CCc---cccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCC-CCccchhhhhccccccccccCCCCCCCCcce
Q 005768 191 LPE---RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDD-MTKEFPACLQKMTNAEQSVAGGNFNKMPQAV 266 (678)
Q Consensus 191 lP~---~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~-~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v 266 (678)
||. .+|.||...+.|.+.|.+..+++++.++..-. ..++ ..+. |.... . ...
T Consensus 3 LP~sfG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemq------T~s~~~r~~----L~~~~---------~----~~~- 58 (249)
T PF06159_consen 3 LPQSFGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQ------TPSQSLRLP----LSDNE---------N----SDS- 58 (249)
T ss_pred CCcccCCEeecCCEEEEEEeecCCCCceEEeEEEEEEe------CCCCCcccc----CCCCc---------c----ccc-
Confidence 565 39999999999999999999999997775431 1111 0000 00000 0 000
Q ss_pred eecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEeeeCCCCccceEEEEEEEEEEEEeceeEEEEEEeecccc-----
Q 005768 267 FSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSR----- 341 (678)
Q Consensus 267 ~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~~~~~~~~~R~lR~~~~v~V~pSL~vs~~~~~s~s~----- 341 (678)
....|+||++.+.-+-..=.+.|.|.|...+.|....+.+ -..|..|-...+.|.+.|+|...+......
T Consensus 59 ----~~~~L~p~~~l~~iv~~~lkE~G~h~L~c~VsY~~~~~~~-g~~~tfRK~ykF~v~~PL~VktK~~~~~~~~~~~~ 133 (249)
T PF06159_consen 59 ----PVASLAPGESLDFIVSHELKELGNHTLVCTVSYTDPTETS-GERRTFRKFYKFQVLNPLSVKTKVYNLEDDSSLSP 133 (249)
T ss_pred ----cccccCCCCeEeEEEEEEeeecCceEEEEEEEEecCcccC-CccceEeeeeEEeCCCCcEEEEEEEecCCcccccc
Confidence 0236899999776665555699999999999665552111 136888999999999999999987766552
Q ss_pred cceEEEEEEEEeCCCCCcEEEEEEEee-eeceEEeeeCCCcccC------------CCcccCccceeeEEEEEeecCC
Q 005768 342 LQQYLVRMDVVNQTSSENFQIHQLSSV-GHQWEISLLQPFDSIF------------PSESLFAGQALSCFFMLKNRGE 406 (678)
Q Consensus 342 ~~~~~l~v~V~N~~~~~~~~l~Qvs~v-S~~W~i~~l~~~~si~------------~~~~l~p~q~~~~~f~~~~~~~ 406 (678)
...+.|.+.|+|.+. ..+.|..|..- ++.|+...+....... ....|.|+..-...|++.+...
T Consensus 134 ~~~~~LEaqlqN~s~-~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~ 210 (249)
T PF06159_consen 134 RERVFLEAQLQNISS-GPLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPE 210 (249)
T ss_pred ceeEEEEEEEEecCC-CceEEEEEEeecCCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCc
Confidence 247999999999994 47888888876 6778887665211100 1124778888777788888754
No 6
>COG1470 Predicted membrane protein [Function unknown]
Probab=97.20 E-value=0.02 Score=63.57 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=81.1
Q ss_pred eeeEEEcCCceEEEEEEEEeCc---eEEEEEEEEEEEEceeeeeEEeeeecccccccccccccccCCCCCceEEEEEcCC
Q 005768 105 EVDISLGGAETILVQLMVTPKV---EGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSL 181 (678)
Q Consensus 105 ~~~i~L~p~Etk~V~L~v~P~~---~G~L~I~Gv~~~L~~~v~g~~~fe~kg~RL~~tk~r~~~~y~pD~rL~~~Vi~~~ 181 (678)
..++-|.|+|++.+.|.++|-. +|...+.=.. .+ . ..+.-..-|+++++..+
T Consensus 324 vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~I~A---~s----~------------------s~v~~e~~lki~~~g~~ 378 (513)
T COG1470 324 VTSVKLKPGEEKDVTLEVYPSLNATPGTYNVTITA---SS----S------------------SGVTRELPLKIKNTGSY 378 (513)
T ss_pred EEEEEecCCCceEEEEEEecCCCCCCCceeEEEEE---ec----c------------------ccceeeeeEEEEecccc
Confidence 4799999999999999999975 5755443111 11 0 00111122333444333
Q ss_pred CeEEEEEecCC--ccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCC
Q 005768 182 PKLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNF 259 (678)
Q Consensus 182 P~L~v~~~~lP--~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~ 259 (678)
-.. +.+..-| ..+-.||-+.+.+.+.|.|.+||++|.+..+.|.-.... +.
T Consensus 379 ~~~-v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~--------------------Vd------ 431 (513)
T COG1470 379 NEL-VKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIE--------------------VD------ 431 (513)
T ss_pred cee-EEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEE--------------------EC------
Confidence 222 3333323 347899999999999999999999999999988221110 00
Q ss_pred CCCCcceeecCCCcccCCCCeEEEEEEEEeC
Q 005768 260 NKMPQAVFSFPEGISIQGETPLLWPLWYRAA 290 (678)
Q Consensus 260 ~~~~~~v~~lp~~~~L~pGes~~~plwlrap 290 (678)
... +| .|+||++.++++.||+|
T Consensus 432 ----~~~--I~---sL~pge~~tV~ltI~vP 453 (513)
T COG1470 432 ----EST--IP---SLEPGESKTVSLTITVP 453 (513)
T ss_pred ----ccc--cc---ccCCCCcceEEEEEEcC
Confidence 011 22 78999999999999998
No 7
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=96.22 E-value=0.066 Score=48.24 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=56.9
Q ss_pred cccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 005768 25 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 104 (678)
Q Consensus 25 ~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 104 (678)
+-....++|+++.|.|.|+||+..+|.==++.|.+.--.-+|-.. ..+...
T Consensus 6 ~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~-----------------------------~~~~~~ 56 (107)
T PF00927_consen 6 KLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTR-----------------------------DQFKKE 56 (107)
T ss_dssp EEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEE-----------------------------EEEEEE
T ss_pred EECCCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCccc-----------------------------ccEeEE
Confidence 344556799999999999999998765434444322111101000 013344
Q ss_pred eeeEEEcCCceEEEEEEEEeCceEEEEEEEEEEEEc--eeeeeEEee
Q 005768 105 EVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS--GSLVGVYNF 149 (678)
Q Consensus 105 ~~~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L~--~~v~g~~~f 149 (678)
...+.|+|+++..+.+.++|.+.|.-++..-.+++. +.+.|....
T Consensus 57 ~~~~~l~p~~~~~~~~~i~p~~yG~~~~l~~~~~~~~l~~V~g~~~v 103 (107)
T PF00927_consen 57 KFEVTLKPGETKSVEVTITPSQYGPKQLLVDLFSSDALADVKGTKQV 103 (107)
T ss_dssp EEEEEE-TTEEEEEEEEE-HHSHEEECCEEEEEEESSEEEEEEEEEE
T ss_pred EcceeeCCCCEEEEEEEEEceeEecchhcchhcchhhhcCeeccEEE
Confidence 689999999999999999999999844432134433 445555443
No 8
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.55 E-value=0.044 Score=46.59 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=46.0
Q ss_pred CccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccC
Q 005768 197 AGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQ 276 (678)
Q Consensus 197 ~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~ 276 (678)
.||...+.++++|.|..++.++.+..+.|+=..... ..-.+ ..|+
T Consensus 3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~--------------------------------~~~~~---~~l~ 47 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSA--------------------------------SPASV---PSLP 47 (78)
T ss_dssp TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE-----------------------------------EEEEE-----B-
T ss_pred CCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccC--------------------------------Ccccc---ccCC
Confidence 699999999999999999999998888773222100 00011 2788
Q ss_pred CCCeEEEEEEEEeC---CCCeEEEEEEEEe
Q 005768 277 GETPLLWPLWYRAA---VPGKISLSITIYY 303 (678)
Q Consensus 277 pGes~~~plwlrap---~~G~~~l~~LfyY 303 (678)
||++.++.+.|+.| .+|...|.+...|
T Consensus 48 pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y 77 (78)
T PF10633_consen 48 PGESVTVTFTVTVPADAAPGTYTVTVTARY 77 (78)
T ss_dssp TTSEEEEEEEEEE-TT--SEEEEEEEEEE-
T ss_pred CCCEEEEEEEEECCCCCCCceEEEEEEEEe
Confidence 99999999999997 5689888888777
No 9
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=95.34 E-value=0.11 Score=45.16 Aligned_cols=85 Identities=14% Similarity=0.271 Sum_probs=57.2
Q ss_pred CeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCC
Q 005768 182 PKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNK 261 (678)
Q Consensus 182 P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~ 261 (678)
|-|.|.....|..+..|+..++.++++|.|..++.++.+.. ...+. ..
T Consensus 2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~------~~~~~-~~------------------------- 49 (101)
T PF07705_consen 2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRL------YLDGN-SV------------------------- 49 (101)
T ss_dssp --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEE------EETTE-EE-------------------------
T ss_pred CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEE------EECCc-ee-------------------------
Confidence 56777777889999999999999999999999999986661 11111 00
Q ss_pred CCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEee
Q 005768 262 MPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYE 304 (678)
Q Consensus 262 ~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe 304 (678)
....+ ..|+||++.++.|.+..+..|.+.+.+.+-+.
T Consensus 50 ---~~~~i---~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD~~ 86 (101)
T PF07705_consen 50 ---STVTI---PSLAPGESETVTFTWTPPSPGSYTIRVVIDPD 86 (101)
T ss_dssp ---EEEEE---SEB-TTEEEEEEEEEE-SS-CEEEEEEEESTT
T ss_pred ---ccEEE---CCcCCCcEEEEEEEEEeCCCCeEEEEEEEeeC
Confidence 00111 37899999999999999999999988877553
No 10
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.14 E-value=0.19 Score=44.53 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=57.6
Q ss_pred CeEEEEEecCCc-cccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 005768 182 PKLEGLIHPLPE-RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 260 (678)
Q Consensus 182 P~L~v~~~~lP~-~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 260 (678)
|.|++.-..+.- .+..|+.....|+|+|.|..|++. ++. .| + ..
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f-~v~--~~------~--~~------------------------ 46 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARF-RVR--QP------E--SL------------------------ 46 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEE-EEE--eC------C--cC------------------------
Confidence 555554333332 478999999999999999998653 121 11 0 00
Q ss_pred CCCcceeec-CCCcccCCCCeEEEEEEEEeC-CCCeEEEEEEEEeee
Q 005768 261 KMPQAVFSF-PEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYEM 305 (678)
Q Consensus 261 ~~~~~v~~l-p~~~~L~pGes~~~plwlrap-~~G~~~l~~LfyYe~ 305 (678)
...|.+ +..+.|+||++.++.+.+.++ ..|..+-.+.+..+.
T Consensus 47 ---~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~ 90 (102)
T PF14874_consen 47 ---SSFFSVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEG 90 (102)
T ss_pred ---CCCEEEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECC
Confidence 011211 234689999999999999965 778888888887654
No 11
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.13 Score=52.09 Aligned_cols=313 Identities=15% Similarity=0.229 Sum_probs=171.4
Q ss_pred cccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 005768 194 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 273 (678)
Q Consensus 194 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~ 273 (678)
.+|-||...+++.+.|-+...+++|-++++-. .+++. +.+|++.+..+.-+...+ ++.
T Consensus 10 niflgetfs~yinv~nds~k~v~~i~lk~dlq------tssqr-l~l~~s~~~~aei~~~~c---------------~~~ 67 (348)
T KOG2625|consen 10 NIFLGETFSFYINVHNDSEKTVKDILLKADLQ------TSSQR-LNLPASNAAAAEIEPDCC---------------EDD 67 (348)
T ss_pred ceeeccceEEEEEEecchhhhhhhheeeeccc------cccee-eccccchhhhhhcCcccc---------------chh
Confidence 48999999999999999999999998776543 22221 111111110000000000 000
Q ss_pred ccCCCCeEEEEEEEEe-C-CCCeEEEEEEEEeeeCCCCccceEEEEEEEEEEEEeceeEEEEEEeeccccc----ceEEE
Q 005768 274 SIQGETPLLWPLWYRA-A-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRL----QQYLV 347 (678)
Q Consensus 274 ~L~pGes~~~plwlra-p-~~G~~~l~~LfyYe~~~~~~~~~~R~lR~~~~v~V~pSL~vs~~~~~s~s~~----~~~~l 347 (678)
. ++- - +-|+|-+-..+.|...++. .|++| -...+.|..-+++....-..-+.+ ++..|
T Consensus 68 v------------i~hevkeig~hilicavny~tq~ge-~myfr---kffkf~v~kpidvktkfynaesdlssv~~dvfl 131 (348)
T KOG2625|consen 68 V------------IHHEVKEIGQHILICAVNYKTQAGE-KMYFR---KFFKFPVLKPIDVKTKFYNAESDLSSVNDDVFL 131 (348)
T ss_pred h------------hhHHHHhhccEEEEEEEeeeccCcc-chhHH---hhccccccccccccceeecccccccccchhhhh
Confidence 1 111 1 4578888888888776643 57774 567778888888887654444332 45667
Q ss_pred EEEEEeCCCCCcEEEEEEEee-eeceEEeeeCCCcccCCCcccCccceeeEEEEEeecCCCCCCCCCCCCCCccccccee
Q 005768 348 RMDVVNQTSSENFQIHQLSSV-GHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVS 426 (678)
Q Consensus 348 ~v~V~N~~~~~~~~l~Qvs~v-S~~W~i~~l~~~~si~~~~~l~p~q~~~~~f~~~~~~~~~~~~~~~~s~~~~~~sdv~ 426 (678)
.-.++|++.+..|. ..|+.- |-++.+..+...+ ..|+-++.| .+.-.
T Consensus 132 eaqien~s~a~mfl-ekv~ldps~~ynvt~i~~~~--------e~gdcvstf-----------------------g~~~~ 179 (348)
T KOG2625|consen 132 EAQIENMSNANMFL-EKVELDPSIHYNVTEIAHED--------EAGDCVSTF-----------------------GSGAL 179 (348)
T ss_pred hhhhhcccccchhh-hhhccCchheecceeecchh--------hcccccccc-----------------------ccccc
Confidence 77788887764331 112111 2222222211000 011111111 01111
Q ss_pred ecCCCCccccccCCcchhhhhhhhhccccccCCCCc-eeEEEEecccccCCCCCCCCCccccceeeccccccCCCceEEE
Q 005768 427 LQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNT-VDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWL 505 (678)
Q Consensus 427 l~~~~~~~~~~s~~P~~df~~~~r~~~~~~~~~~~~-l~liv~W~a~~~~~~~~~~~~~~~Gq~h~~~~~~~~~~pi~~~ 505 (678)
|...+-.++...-.|-+||+..-.+-. +... =.|-+.||.+..|.+. +.+ .|.... .-+-.-++.+
T Consensus 180 lkp~d~rq~l~cl~pk~d~~~~~gi~k-----~lt~igkldi~wktnlgekgr-lqt----s~lqri---apgygdvrls 246 (348)
T KOG2625|consen 180 LKPKDIRQFLFCLKPKADFAEKAGIIK-----DLTSIGKLDISWKTNLGEKGR-LQT----SALQRI---APGYGDVRLS 246 (348)
T ss_pred cCccchhhheeecCchHHHHHhhcccc-----ccceeeeeEEEeecccccccc-chH----HHHHhh---cCCCCceEEE
Confidence 111112345556667778875432210 1111 1234789987555542 211 000000 0112346666
Q ss_pred EeC-CCeeeccCCCCceeEeEEEEEEecCCceEEEEEEecCCCCCCCCCccccCCCCCCCCCCCCCcccccccccceecc
Q 005768 506 VDG-PRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTS 584 (678)
Q Consensus 506 l~~-p~~i~HdFs~~~C~vpV~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (678)
++. |..|.-. .+ .-|+-.|.|||+..+|+.+++- . + +
T Consensus 247 le~~p~~vdle--ep---f~iscki~ncseraldl~l~l~----~---~------------n------------------ 284 (348)
T KOG2625|consen 247 LEAIPACVDLE--EP---FEISCKITNCSERALDLQLELC----N---P------------N------------------ 284 (348)
T ss_pred eeccccccccC--CC---eEEEEEEcccchhhhhhhhhhc----C---C------------C------------------
Confidence 644 5544321 11 1245568999998888877742 1 1 1
Q ss_pred cCCcccccccccccccCceEEeccccceEE-eCCCceeEEEeEEEEecceeeecCCcEEEEEE
Q 005768 585 QLPLNQVKRSSLLESVSPFIWSGSSASSVR-LQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 646 (678)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~f~w~g~~~~~~~-l~p~~~~~i~l~~~~~~pGvYdl~~~~~~~~~ 646 (678)
+....|||.+-..+- |.|.+...+.|.+.=..-|.-.+++.|+.=.+
T Consensus 285 ---------------nrhi~~c~~sg~qlgkl~ps~~l~~al~l~~~~~giqsisgiritdtf 332 (348)
T KOG2625|consen 285 ---------------NRHIHFCGISGRQLGKLHPSQHLCFALNLFPSTQGIQSISGIRITDTF 332 (348)
T ss_pred ---------------CceeEEeccccccccCCCCcceeeeEEeeccchhcceeecceEeehhh
Confidence 346789999888775 99999999999999999999999999987555
No 12
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=87.96 E-value=4.6 Score=40.32 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=68.3
Q ss_pred cCCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEec-CC-ceEEeccCCCCCccchhhhhccccccccccC
Q 005768 179 KSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVS-HP-RFLSIGNRDDMTKEFPACLQKMTNAEQSVAG 256 (678)
Q Consensus 179 ~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s-~p-~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~ 256 (678)
+.-|+|-++=.-++.-+..|+-..+.++|.|.|..++.++.+.=+ -| +.|.+.+.
T Consensus 18 ~~~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG----------------------- 74 (181)
T PF05753_consen 18 DSPARLLVSKQILNKYLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSG----------------------- 74 (181)
T ss_pred CCCcEEEEEEeeccccccCCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccC-----------------------
Confidence 346677776666778899999999999999999999999866531 11 22222111
Q ss_pred CCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEE-EEEEEeeeCCC
Q 005768 257 GNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISL-SITIYYEMGDV 308 (678)
Q Consensus 257 ~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l-~~LfyYe~~~~ 308 (678)
..-..| ..|+||+..+..+.+++-..|.+.+ .-.+.|...++
T Consensus 75 -------~~s~~~---~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~~~ 117 (181)
T PF05753_consen 75 -------SLSASW---ERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDSEG 117 (181)
T ss_pred -------ceEEEE---EEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECCCC
Confidence 011122 4899999999999999878898887 55566655543
No 13
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=86.36 E-value=2.9 Score=35.11 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=42.4
Q ss_pred cCCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEec
Q 005768 179 KSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIG 231 (678)
Q Consensus 179 ~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg 231 (678)
..-+.+.+.-..-+..+.-||...++|+++|.|..++.++.+.-.-|.-+.|-
T Consensus 21 ~~~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~v 73 (76)
T PF01345_consen 21 VAIPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPATNVVVTDTLPAGLTFV 73 (76)
T ss_pred cCCCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEEe
Confidence 44566666666778889999999999999999999999998877666554443
No 14
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=85.33 E-value=5.2 Score=35.53 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=38.1
Q ss_pred ccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCC
Q 005768 198 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 277 (678)
Q Consensus 198 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~p 277 (678)
+..+...|.|+|.|..++.. +|+++.|..+.+. |..+.|+|
T Consensus 17 ~~~~~~~l~l~N~s~~~i~f-Kiktt~~~~y~v~--------------------------------------P~~G~i~p 57 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPIAF-KIKTTNPNRYRVK--------------------------------------PSYGIIEP 57 (109)
T ss_dssp SS-EEEEEEEEE-SSSEEEE-EEEES-TTTEEEE--------------------------------------SSEEEE-T
T ss_pred CceEEEEEEEECCCCCcEEE-EEEcCCCceEEec--------------------------------------CCCEEECC
Confidence 56699999999999988776 6777777544432 22458999
Q ss_pred CCeEEEEEEEEeC
Q 005768 278 ETPLLWPLWYRAA 290 (678)
Q Consensus 278 Ges~~~plwlrap 290 (678)
|++.++.|++++.
T Consensus 58 ~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 58 GESVEITITFQPF 70 (109)
T ss_dssp TEEEEEEEEE-SS
T ss_pred CCEEEEEEEEEec
Confidence 9999999999984
No 15
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=77.96 E-value=7 Score=33.84 Aligned_cols=73 Identities=26% Similarity=0.372 Sum_probs=39.9
Q ss_pred eEeEEEEEEecCCceEEEEEEecCCCCCCCCCccccCCCCCCCCCCCCCcccccccccceecccCCcccccccccccccC
Q 005768 522 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 601 (678)
Q Consensus 522 ~vpV~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (678)
.|.++|++.|-++..+.+...+ +|. ||+ +|. |-.|.-++
T Consensus 1 ~v~~~l~v~N~s~~~v~l~f~s-------gq~------------------~D~------~v~-d~~g~~vw--------- 39 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQFPS-------GQR------------------YDF------VVK-DKEGKEVW--------- 39 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEEESS-------S--------------------EEE------EEE--TT--EEE---------
T ss_pred CEEEEEEEEeCCCCeEEEEeCC-------CCE------------------EEE------EEE-CCCCCEEE---------
Confidence 3678999999999887777652 222 333 333 22233333
Q ss_pred ceEEec-----cccceEEeCCCceeEEEeEEEEec--ceeeec
Q 005768 602 PFIWSG-----SSASSVRLQPMSTTDIAMKVCLFS--PGTYDL 637 (678)
Q Consensus 602 ~f~w~g-----~~~~~~~l~p~~~~~i~l~~~~~~--pGvYdl 637 (678)
.|+. +.-....|+|||+.+....+--.. ||.|-|
T Consensus 40 --rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 40 --RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp --ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred --EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 3332 344567799999999998887777 999865
No 16
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=75.29 E-value=22 Score=40.17 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=54.9
Q ss_pred cCccEEEEEEE-EEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeec-CCCc
Q 005768 196 YAGDLRHLVLE-LKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF-PEGI 273 (678)
Q Consensus 196 l~GEi~~~~l~-L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~l-p~~~ 273 (678)
..||...=.|. |.|.|+..|.-=|.......- +++. . ......|-| ....
T Consensus 244 ~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~--~~~~----------~----------------~~~~~~F~Fd~~~g 295 (426)
T PF14646_consen 244 HPGERVSKEVVRLENNGTTAIYYSWRRVPFFKN--FGSL----------F----------------RAQDQRFYFDTSSG 295 (426)
T ss_pred ccCceeeEEEEEEecCCceEEEEEEEecccccc--cchh----------c----------------cccCCeEEEeCCCC
Confidence 67888888888 999999988765555443210 1100 0 001123433 2457
Q ss_pred ccCCCCeEEEEEEEEeCCCCeEEEEEEEEeeeC
Q 005768 274 SIQGETPLLWPLWYRAAVPGKISLSITIYYEMG 306 (678)
Q Consensus 274 ~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~ 306 (678)
.|.||+++.++|++++..+|...=.|.+.-.|.
T Consensus 296 vilPGe~~~~~~~F~s~~~Gif~E~W~L~t~P~ 328 (426)
T PF14646_consen 296 VILPGETRNFPFMFKSRKVGIFKERWELRTFPP 328 (426)
T ss_pred EECCCceEEEEEEEeCCCceEEEEEEEEEEecc
Confidence 999999999999999998887777776665443
No 17
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=74.41 E-value=6.8 Score=30.97 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=33.0
Q ss_pred ccccCccEEEEEEEEEecccccccceEEEecCCceEEecc
Q 005768 193 ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN 232 (678)
Q Consensus 193 ~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~ 232 (678)
..+.-|+...++|+++|.|..++.++.+.=.-|.-+.|-.
T Consensus 6 ~~~~~Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~v~ 45 (53)
T TIGR01451 6 TVATIGDTITYTITVTNNGNVPATNVVVTDILPSGTTFVS 45 (53)
T ss_pred cccCCCCEEEEEEEEEECCCCceEeEEEEEcCCCCCEEEe
Confidence 4567899999999999999999999987776776555544
No 18
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=71.54 E-value=65 Score=34.56 Aligned_cols=102 Identities=14% Similarity=0.273 Sum_probs=62.7
Q ss_pred CccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC
Q 005768 192 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 271 (678)
Q Consensus 192 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~ 271 (678)
-..+..|+..++-|.++|.|..|+.=..|.-+ |.-..+ +..-+.|- .+. +-
T Consensus 92 ~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aS------l~~p~d----~~~~iqNf-----------------Ta~--~y 142 (285)
T PF03896_consen 92 TKKLPAGEPVKFLVGFTNKGSEPFTVESIEAS------LRYPQD----YSYYIQNF-----------------TAV--RY 142 (285)
T ss_pred cccccCCCeEEEEEEEEeCCCCCEEEEEEeee------ecCccc----cceEEEee-----------------ccc--cc
Confidence 35689999999999999999855332211110 000000 00001111 111 12
Q ss_pred CcccCCCCeEEEEEEEEeC---CCCeEEEEEEEEeeeCCCCccceEEEEEEEEEEEE
Q 005768 272 GISIQGETPLLWPLWYRAA---VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEV 325 (678)
Q Consensus 272 ~~~L~pGes~~~plwlrap---~~G~~~l~~LfyYe~~~~~~~~~~R~lR~~~~v~V 325 (678)
+..++||+..+++-.+... .++...|.+.++|+-.++. .|...-+.-+|+|
T Consensus 143 ~~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d~~g~---~y~~~~fN~TV~I 196 (285)
T PF03896_consen 143 NREVPPGEEATFPYSFTPSEELAPRPFGLVINLIYEDSDGN---QYQVTVFNGTVTI 196 (285)
T ss_pred CcccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEeCCCC---EEEEEEecceEEE
Confidence 5689999999999999873 6778899999999866642 3544445555554
No 19
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=69.12 E-value=67 Score=27.45 Aligned_cols=69 Identities=29% Similarity=0.350 Sum_probs=44.5
Q ss_pred ccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 005768 26 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 105 (678)
Q Consensus 26 ~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 105 (678)
.......|+++.|.+.++|-=... ..++.+.+..... . ...
T Consensus 11 ~~~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~--~-----------------------------------~~~ 51 (101)
T PF07705_consen 11 SPSNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDGN--S-----------------------------------VST 51 (101)
T ss_dssp C-SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETTE--E-----------------------------------EEE
T ss_pred CCCcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECCc--e-----------------------------------ecc
Confidence 344567899999999999964444 5555555431111 0 012
Q ss_pred eeE-EEcCCceEEEEEEEEeCceEEEEEE
Q 005768 106 VDI-SLGGAETILVQLMVTPKVEGILKIV 133 (678)
Q Consensus 106 ~~i-~L~p~Etk~V~L~v~P~~~G~L~I~ 133 (678)
..| .|+|++++.+.+.+.+...|...|.
T Consensus 52 ~~i~~L~~g~~~~v~~~~~~~~~G~~~i~ 80 (101)
T PF07705_consen 52 VTIPSLAPGESETVTFTWTPPSPGSYTIR 80 (101)
T ss_dssp EEESEB-TTEEEEEEEEEE-SS-CEEEEE
T ss_pred EEECCcCCCcEEEEEEEEEeCCCCeEEEE
Confidence 466 8999999999999999999988755
No 20
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=68.41 E-value=18 Score=34.68 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=29.0
Q ss_pred eEEEcCCceEEEEEEEEeCceEEEEEEEEEEEEce
Q 005768 107 DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG 141 (678)
Q Consensus 107 ~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L~~ 141 (678)
.|.+..++..++.|.+.|.+.|.|..=.|+.+-..
T Consensus 80 ~f~~~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 80 VFSLSDGSEHEIPLTLIPLRAGYLPLPKVEIRPYD 114 (147)
T ss_pred eEEecCCCeEEEEEEEEecccceecCCEEEEEecc
Confidence 67778889999999999999999988777655443
No 21
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=66.91 E-value=43 Score=28.13 Aligned_cols=68 Identities=25% Similarity=0.290 Sum_probs=38.8
Q ss_pred EcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEE
Q 005768 31 VAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISL 110 (678)
Q Consensus 31 vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L 110 (678)
..||.+.+.+.++|.-..++ .+++|.+.. ++ +-.. ... + ..--.|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~--~~v~~~l~~-P~-GW~~--------------~~~-~----------------~~~~~l 46 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPL--TNVSLSLSL-PE-GWTV--------------SAS-P----------------ASVPSL 46 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-B--SS-EEEEE---T-TSE-----------------E-E----------------EEE--B
T ss_pred CCCCEEEEEEEEEECCCCce--eeEEEEEeC-CC-Cccc--------------cCC-c----------------cccccC
Confidence 47999999999999887664 677776553 22 1100 000 0 011289
Q ss_pred cCCceEEEEEEEEeCc---eEEEEEE
Q 005768 111 GGAETILVQLMVTPKV---EGILKIV 133 (678)
Q Consensus 111 ~p~Etk~V~L~v~P~~---~G~L~I~ 133 (678)
.|+++..+.+.|+|-. .|...|.
T Consensus 47 ~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 47 PPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEECCCCCCCceEEEE
Confidence 9999999999999854 5886664
No 22
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=66.60 E-value=16 Score=31.26 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=39.7
Q ss_pred cEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCC-cccCC
Q 005768 199 DLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEG-ISIQG 277 (678)
Q Consensus 199 Ei~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~-~~L~p 277 (678)
...+..+.|+|.|..|++++.+.++. +. .+-- .+.+ .....|.||.. ..|+|
T Consensus 17 ~y~qy~v~I~N~~~~~I~~~~i~~~~--l~---~~iW-------~l~~---------------~~~~~y~lPs~~~~i~p 69 (80)
T PF09478_consen 17 TYTQYDVTITNNGSKPIKSLKISIDN--LY---GSIW-------GLDK---------------VSGNTYTLPSYQPTIKP 69 (80)
T ss_pred EEEEEEEEEEECCCCeEEEEEEEECc--cc---hhhe-------eEEe---------------ccCCEEECCccccccCC
Confidence 46789999999999999999888772 21 1100 0000 11246777754 49999
Q ss_pred CCeEEEEE
Q 005768 278 ETPLLWPL 285 (678)
Q Consensus 278 Ges~~~pl 285 (678)
|++++|=.
T Consensus 70 g~s~~FGY 77 (80)
T PF09478_consen 70 GQSFTFGY 77 (80)
T ss_pred CCEEEEEE
Confidence 99988743
No 23
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=66.55 E-value=34 Score=34.44 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=50.8
Q ss_pred cccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 005768 194 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 273 (678)
Q Consensus 194 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~ 273 (678)
.+.=||...+.-+.+|.+..|+....+=.=.| +.. - .|. + +-..|=|. ..
T Consensus 89 ~V~pGE~~~~~y~a~N~sd~~i~g~A~~nV~P-----~~a----------~-------~YF---~----KieCFCF~-eQ 138 (188)
T PRK05089 89 DVHPGELNLVFYEAENLSDRPIVGQAIPSVTP-----GQA----------G-------AYF---N----KIECFCFT-QQ 138 (188)
T ss_pred EEcCCCeEEEEEEEECCCCCcEEEEEecccCH-----HHH----------h-------hhc---c----ceeeeccc-Cc
Confidence 47889999999999999999988752211111 100 0 000 0 11234343 46
Q ss_pred ccCCCCeEEEEEEEEe-C----CCCeEEEEEEEEe
Q 005768 274 SIQGETPLLWPLWYRA-A----VPGKISLSITIYY 303 (678)
Q Consensus 274 ~L~pGes~~~plwlra-p----~~G~~~l~~LfyY 303 (678)
.|+|||++.+|+.+-= | ...+.+|.+.|+=
T Consensus 139 ~L~pgE~~~mPV~F~IDP~i~~dv~~iTLSYTff~ 173 (188)
T PRK05089 139 TLQPGETREMPVVFYVDPDLPKDVKTITLSYTFFD 173 (188)
T ss_pred ccCCCCeEecCEEEEECCCcccccCEEEEEEEEEe
Confidence 9999999999998864 3 3356666776664
No 24
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=65.31 E-value=44 Score=36.08 Aligned_cols=130 Identities=14% Similarity=0.157 Sum_probs=67.1
Q ss_pred ceEEEEeCCCeeeccCCCCceeEeEEEEEEecCCceEEEEEEecCCCCCCCCCccccCCCCCCCCCCCCCcccccccccc
Q 005768 501 PITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDI 580 (678)
Q Consensus 501 pi~~~l~~p~~i~HdFs~~~C~vpV~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (678)
-|+.+..+|..|+ -....-.++.+.|.|+..+++.+-...+..-...- .....+...+..++.+= ...
T Consensus 157 gv~~sF~gp~~V~-----~Ge~F~w~v~ivN~S~~~r~L~l~~~~~r~~~~~~-~~~~~~~~~~s~~~~~~------~~~ 224 (306)
T PF12735_consen 157 GVTFSFSGPSSVK-----VGEPFSWKVFIVNRSSSPRKLALYVPPRRRRNDER-SNSPPPNPSSSSNLNNK------QIA 224 (306)
T ss_pred CeEEEEeCCceEe-----cCCeEEEEEEEEECCCCCeeEEEEecCcccccccc-ccCCCCCcccccccccc------ccc
Confidence 4555665554332 34566789999999998888888776633221100 00000000000000000 000
Q ss_pred eecccCCcccccccccccc-cCceEEeccccceE-EeCCCceeEEEeEEEEecceeeecCCcEEE
Q 005768 581 KVTSQLPLNQVKRSSLLES-VSPFIWSGSSASSV-RLQPMSTTDIAMKVCLFSPGTYDLSNYALN 643 (678)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~-~~~f~w~g~~~~~~-~l~p~~~~~i~l~~~~~~pGvYdl~~~~~~ 643 (678)
....+-...|.+.-.+.-. ..--++..- .+|+ -|.|+++..+.|+..-+++|+|+|.+-||.
T Consensus 225 ~~v~~en~~~~~~~~~~~~~~~gli~Lsn-DiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvv 288 (306)
T PF12735_consen 225 DAVTDENIVQAMQKYSSVEESTGLICLSN-DIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVV 288 (306)
T ss_pred ccceehhHHHHhhhhcccccCCceEEecc-cccccccCCCceEEEEEEEEEeccceEeecceEEE
Confidence 0111111112221110000 123455544 4444 599999999999999999999999987764
No 25
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=65.14 E-value=39 Score=29.22 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=38.2
Q ss_pred EEEEEEEeCCccCcEEee-------eEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005768 36 VKVDIEFKNPLQIPISIS-------NISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 108 (678)
Q Consensus 36 i~V~V~L~NPL~ipL~Ls-------~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 108 (678)
+.+.++++|+=.-++.|+ |+.|. ++++... =.=+++..|+....+.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~----d~~g~~v-----------------------wrwS~~~~FtQal~~~ 54 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVK----DKEGKEV-----------------------WRWSDGKMFTQALQEE 54 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-----TT--EE-----------------------EETTTT-------EEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEE----CCCCCEE-----------------------EEecCCchhhheeeEE
Confidence 678899999999988886 23322 2211110 0123456788888999
Q ss_pred EEcCCceEEEEEEEEeCc--eEEEEEE
Q 005768 109 SLGGAETILVQLMVTPKV--EGILKIV 133 (678)
Q Consensus 109 ~L~p~Etk~V~L~v~P~~--~G~L~I~ 133 (678)
+|.|+|+++.+..+-... +|..++.
T Consensus 55 ~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 55 TLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EECCCCEEEEEEEECCCCCCCceEEEe
Confidence 999999999998887666 7877664
No 26
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=64.40 E-value=15 Score=29.78 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=37.6
Q ss_pred cCceEEeccccceEEeCCCceeEEEeEEEEecceeeecCCc
Q 005768 600 VSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNY 640 (678)
Q Consensus 600 ~~~f~w~g~~~~~~~l~p~~~~~i~l~~~~~~pGvYdl~~~ 640 (678)
+..|+-+|....+.++-|++..+++.+-.=+.+|-|-|=..
T Consensus 15 n~~F~v~G~~~~~~~~~~~~~~~i~~~Fipl~aG~~~LP~I 55 (57)
T PF12742_consen 15 NDNFIVCGPKKMNFHMWPGQKFEIPYNFIPLTAGFLKLPKI 55 (57)
T ss_pred CCceEEEccceeEEEEccCceEEEEEEEEEeehheecCccc
Confidence 56899999999999999999999999999999999988543
No 27
>PF13584 BatD: Oxygen tolerance
Probab=61.70 E-value=1.5e+02 Score=33.82 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=51.5
Q ss_pred ceEEEEEEEEeCceEEEEEEEEEEEEceeeeeEEeeeecccccccccccccccCCCCCceEEEEEcCCCeEEEEEecCCc
Q 005768 114 ETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPE 193 (678)
Q Consensus 114 Etk~V~L~v~P~~~G~L~I~Gv~~~L~~~v~g~~~fe~kg~RL~~tk~r~~~~y~pD~rL~~~Vi~~~P~L~v~~~~lP~ 193 (678)
......+.+.|+++|.++|=.+.+++.|...-...+.++-.. ....... + ..... .-+.+.+.--+.
T Consensus 71 ~~~~~~~~l~p~~~G~~~IP~~~v~v~Gk~~~S~pi~i~V~~-----~~~~~~~-~-----~~~~~--~~~~l~~~v~~~ 137 (484)
T PF13584_consen 71 SSTTYTYTLQPKKTGTFTIPPFTVEVDGKTYKSQPITIEVSK-----ASQSPSQ-P-----PSNAD--DDVFLEAEVSKK 137 (484)
T ss_pred EEEEEEEEEEecccceEEEceEEEEECCEEEeecCEEEEEEe-----cccCCcc-c-----ccccc--ccEEEEEEeCCC
Confidence 567788899999999999999999998843223333332211 0000000 0 00011 122233332356
Q ss_pred cccCccEEEEEEEEEeccccc
Q 005768 194 RAYAGDLRHLVLELKNQSDFS 214 (678)
Q Consensus 194 ~ll~GEi~~~~l~L~N~G~~p 214 (678)
.+|.||-..++++|.=.....
T Consensus 138 ~~Yvge~v~lt~~ly~~~~~~ 158 (484)
T PF13584_consen 138 SVYVGEPVILTLRLYTRNNFR 158 (484)
T ss_pred ceecCCcEEEEEEEEEecCch
Confidence 799999999999887665543
No 28
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=59.74 E-value=47 Score=34.45 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=56.1
Q ss_pred EEcCCCeEEEEEecCC--ccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccc
Q 005768 177 VIKSLPKLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSV 254 (678)
Q Consensus 177 Vi~~~P~L~v~~~~lP--~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~ 254 (678)
|.+.|||- |...- ..+.-||...+.-+.+|.+..|+-...+=.=.| +. +-. |.
T Consensus 117 v~~~lpW~---F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ynV~P-----~~----------Ag~-------YF 171 (232)
T PTZ00128 117 TGSTMPWE---FEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVATYHIAP-----PE----------AGL-------YF 171 (232)
T ss_pred CCCCCCce---EEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCH-----HH----------Hhh-------hc
Confidence 33456643 44332 348899999999999999999988752211111 10 000 00
Q ss_pred cCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEe-C----C-----CCeEEEEEEEEe
Q 005768 255 AGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRA-A----V-----PGKISLSITIYY 303 (678)
Q Consensus 255 ~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlra-p----~-----~G~~~l~~LfyY 303 (678)
+ +-..|=|. ...|+|||++++|+.+-= | . ..+.+|.+.|+=
T Consensus 172 ---n----KieCFCF~-eQ~L~pgE~~~MPV~F~IDP~i~~D~~~~~v~~ITLSYTFF~ 222 (232)
T PTZ00128 172 ---N----KIQCFCFE-EQRLNPHEEVDMPVFFYIDPDILNDPRLKWVDEITLSYTFFE 222 (232)
T ss_pred ---c----ceeeeccc-ccccCCCCeEecCEEEEECCCCCCCcccCCcCEEEEEEEEEe
Confidence 0 11234343 569999999999998863 3 1 245666666653
No 29
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=56.85 E-value=1.2e+02 Score=26.56 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=50.8
Q ss_pred ccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCC
Q 005768 198 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 277 (678)
Q Consensus 198 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~p 277 (678)
+...++.+.+.|.+..+++++.+...-|.++.+.-. .+.+..|+|
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~-----------------------------------~~s~~~l~p 61 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQ-----------------------------------PPSSPTLPP 61 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEc-----------------------------------CCCCCccCC
Confidence 445789999999999999999777766643332210 012346888
Q ss_pred CCeEEEEEEEEeCCCCeEEEEEEEEeeeC
Q 005768 278 ETPLLWPLWYRAAVPGKISLSITIYYEMG 306 (678)
Q Consensus 278 Ges~~~plwlrap~~G~~~l~~LfyYe~~ 306 (678)
|+..+--+.+.++.++...+++=+-|.-.
T Consensus 62 ~~~i~q~~~i~~~~~~~~~~~~~vsy~~~ 90 (104)
T smart00809 62 GGQITQVLKVENPGKFPLRLRLRLSYLLG 90 (104)
T ss_pred CCCEEEEEEEECCCCCCEEEEEEEEEEEC
Confidence 99888889998876655666555555443
No 30
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=56.24 E-value=25 Score=34.13 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=22.9
Q ss_pred EEEEEcCCCeEEEEEecC--CccccCccEEEEEEEEEecccccccce
Q 005768 174 KFIVIKSLPKLEGLIHPL--PERAYAGDLRHLVLELKNQSDFSVKNL 218 (678)
Q Consensus 174 ~~~Vi~~~P~L~v~~~~l--P~~ll~GEi~~~~l~L~N~G~~pl~~l 218 (678)
..++.+.||| .|... ...+.=||...+.-+.+|.+..|+...
T Consensus 43 ~a~~~~~lpW---~F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~ 86 (152)
T PF04442_consen 43 DANVNPGLPW---EFKPEQRSVKVHPGETALVFYEATNPSDKPITGQ 86 (152)
T ss_dssp EEEE-TTS-E---EEE-S-SEEEEETT--EEEEEEEEE-SSS-EE--
T ss_pred EeecCCCCce---EEEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEE
Confidence 3444455665 23322 234778999999999999999998876
No 31
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=55.28 E-value=50 Score=30.75 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=47.4
Q ss_pred eEeEEEEEEecCCceEEEEEEecCCCCCCCCCccccCCCCCCCCCCCCCcccccccccceecccCCcccccccccccccC
Q 005768 522 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 601 (678)
Q Consensus 522 ~vpV~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (678)
...+++.|.|.++..+.|.+...+..++. .|-.|-+..+ .|...+. ...-
T Consensus 28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~------------------nG~I~Y~~~~-~~~d~sl----------~~~~- 77 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEITVKVSANTATTND------------------NGVIDYSQNN-PKKDKSL----------KYPF- 77 (121)
T ss_pred EEEEEEEEEeCCCCCEEEEEEEeeeEecC------------------CEEEEECCCC-cccCccc----------Ccch-
Confidence 56799999999999999999887666541 2322222111 0000000 0000
Q ss_pred ceEEeccccceEEeCCCceeEEEeEEEEec
Q 005768 602 PFIWSGSSASSVRLQPMSTTDIAMKVCLFS 631 (678)
Q Consensus 602 ~f~w~g~~~~~~~l~p~~~~~i~l~~~~~~ 631 (678)
--|...... ++|+|+++..|++++.+..
T Consensus 78 -~~~v~~~~~-Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 78 -SDLVKIPKE-VTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred -HHhccCCcE-EEECCCCEEEEEEEEEcCC
Confidence 114444444 9999999999999988765
No 32
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=54.01 E-value=1.1e+02 Score=26.78 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=50.1
Q ss_pred cccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCcee
Q 005768 23 KFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFT 102 (678)
Q Consensus 23 ~~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 102 (678)
+.-+...+.+|+.....|.|+|--.++..+. ++. ++. . ...|.
T Consensus 9 ~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~-v~~-----~~~--~-----------------------------~~~~~ 51 (102)
T PF14874_consen 9 KELDFGNVFVGQTYSRTVTLTNTSSIPARFR-VRQ-----PES--L-----------------------------SSFFS 51 (102)
T ss_pred CEEEeeEEccCCEEEEEEEEEECCCCCEEEE-EEe-----CCc--C-----------------------------CCCEE
Confidence 3567788899999999999999999987654 221 110 0 11244
Q ss_pred eeeeeEEEcCCceEEEEEEEEe-CceEEE
Q 005768 103 LSEVDISLGGAETILVQLMVTP-KVEGIL 130 (678)
Q Consensus 103 ~~~~~i~L~p~Etk~V~L~v~P-~~~G~L 130 (678)
+....-.|.|+++..+.+.+.| +..|.+
T Consensus 52 v~~~~g~l~PG~~~~~~V~~~~~~~~g~~ 80 (102)
T PF14874_consen 52 VEPPSGFLAPGESVELEVTFSPTKPLGDY 80 (102)
T ss_pred EECCCCEECCCCEEEEEEEEEeCCCCceE
Confidence 4445667999999999999994 556654
No 33
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=53.52 E-value=4e+02 Score=30.55 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=88.5
Q ss_pred ecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceee
Q 005768 189 HPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFS 268 (678)
Q Consensus 189 ~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~ 268 (678)
...|..+.-|+...++++|+|.|..+++++-+...+|.-..- .++. . ....-
T Consensus 157 ~~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~~--------------------~i~~---~-----~~~~~ 208 (500)
T COG1361 157 VSSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLESPTSYLG--------------------PIYS---A-----NDTPY 208 (500)
T ss_pred ecCccccCCCCccEEEEEEEeCCcccccceEEEEeCCcceec--------------------cccc---c-----cccee
Confidence 345778999999999999999999999999766655210000 0000 0 00111
Q ss_pred cCCCcccCCCCeEEEEEEEEeC---CCCeEEEEEEEEeeeCCCCccceEEEEEEEEEEEEeceeEEEEEEeecc---ccc
Q 005768 269 FPEGISIQGETPLLWPLWYRAA---VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWS---SRL 342 (678)
Q Consensus 269 lp~~~~L~pGes~~~plwlrap---~~G~~~l~~LfyYe~~~~~~~~~~R~lR~~~~v~V~pSL~vs~~~~~s~---s~~ 342 (678)
-..|.||++..+.+-+-+- ..|...+++.+-|...+. ..+.-.....+.+.....++++..-.. --.
T Consensus 209 ---i~~l~p~es~~v~f~v~~~~~a~~g~y~i~i~i~~~~~~~----~~~~~~~~~~i~~~~~~~~~is~v~~~p~~~~~ 281 (500)
T COG1361 209 ---IGALGPGESVNVTFSVYAGSNAEPGTYTINLEITYKDEEG----SVKSPTITIGIVVVGEPKLDISNVKFDPGVIPL 281 (500)
T ss_pred ---eeeeCCCceEEEEEEEEeecCCCCccEEEEEEEEEecCCc----cccccceEEEEecCCceeEEEEEEEecCCeecc
Confidence 2488999999999999884 689999999999998442 334444556666766666666433222 223
Q ss_pred ceEEEEEEEEeCCC
Q 005768 343 QQYLVRMDVVNQTS 356 (678)
Q Consensus 343 ~~~~l~v~V~N~~~ 356 (678)
....+.+++.|.+.
T Consensus 282 ~~~~i~~~~~~~~~ 295 (500)
T COG1361 282 GGVSIEITITIENS 295 (500)
T ss_pred ceeEEEEEEEEEec
Confidence 56667777766654
No 34
>PRK13202 ureB urease subunit beta; Reviewed
Probab=53.30 E-value=39 Score=30.67 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=42.7
Q ss_pred CccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC
Q 005768 192 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 271 (678)
Q Consensus 192 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~ 271 (678)
+-.+..|....++|+++|.|..|+. +-||=+||-.. ..|.|....++..-. .+.....
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQ----VGSHyHF~E~N----~aL~FDR~~A~G~RL---------dIpaGTa----- 69 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQ----VGSHVHLPQAN----RALSFDRATAHGYRL---------DIPAATA----- 69 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceE----EccccchhhcC----cceeecHhHhcCccc---------ccCCCCe-----
Confidence 4456777667899999999999975 34554454322 123332222221111 1112233
Q ss_pred CcccCCCCeEEEEEEEEe
Q 005768 272 GISIQGETPLLWPLWYRA 289 (678)
Q Consensus 272 ~~~L~pGes~~~plwlra 289 (678)
...+||+++++.|.=.|
T Consensus 70 -vRFEPG~~k~V~LV~~g 86 (104)
T PRK13202 70 -VRFEPGIPQIVGLVPLG 86 (104)
T ss_pred -EEECCCCeEEEEEEEcc
Confidence 35579999999986443
No 35
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=53.29 E-value=40 Score=37.21 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=42.9
Q ss_pred EEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCC
Q 005768 184 LEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMP 263 (678)
Q Consensus 184 L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~ 263 (678)
+.+.+.+.-- =.-|-..+++++++|.|..|+.-=...+..-+|+-..-..+ +..+|..+. +
T Consensus 249 V~~~v~~A~Y-~vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~-~~~~P~~l~--------A--------- 309 (381)
T PF04744_consen 249 VKVKVTDATY-RVPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTD-DPDYPDELL--------A--------- 309 (381)
T ss_dssp EEEEEEEEEE-ESSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS--S---TTTE--------E---------
T ss_pred eEEEEeccEE-ecCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccC-CCCCchhhh--------c---------
Confidence 5555543211 23467778999999999999876655555544433221111 111222110 0
Q ss_pred cceeecCCCcccCCCCeEEEEEEEEe
Q 005768 264 QAVFSFPEGISIQGETPLLWPLWYRA 289 (678)
Q Consensus 264 ~~v~~lp~~~~L~pGes~~~plwlra 289 (678)
..-+.+..+..|+|||++++.+.++.
T Consensus 310 ~~gL~vs~~~pI~PGETrtl~V~a~d 335 (381)
T PF04744_consen 310 ERGLSVSDNSPIAPGETRTLTVEAQD 335 (381)
T ss_dssp TT-EEES--S-B-TT-EEEEEEEEE-
T ss_pred cCcceeCCCCCcCCCceEEEEEEeeh
Confidence 11233444679999999999999975
No 36
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.70 E-value=59 Score=32.87 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=52.2
Q ss_pred cEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCC
Q 005768 199 DLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGE 278 (678)
Q Consensus 199 Ei~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pG 278 (678)
+.....++|+|....++.. +|+++.|..|++... .+.|.||
T Consensus 25 ~~~~~~l~l~N~t~~~vaF-KvktT~p~~y~VrP~--------------------------------------~G~i~p~ 65 (218)
T KOG0439|consen 25 EQVKCSLTLKNPTKLRVAF-KVKTTAPKLYCVRPN--------------------------------------GGVIDPG 65 (218)
T ss_pred ceEEEEEEEecCCCCceEE-EEEcCCCCeEEEcCC--------------------------------------cceECCC
Confidence 5788999999998887776 588888877776542 3588999
Q ss_pred CeEEEEEEEEeC--CCCeE--EEEEEEEeeeCCC
Q 005768 279 TPLLWPLWYRAA--VPGKI--SLSITIYYEMGDV 308 (678)
Q Consensus 279 es~~~plwlrap--~~G~~--~l~~LfyYe~~~~ 308 (678)
++.++.++.++- .+... .-+|+++|-....
T Consensus 66 ~t~~i~v~~q~~~~~P~d~~~r~kF~v~~~~~~~ 99 (218)
T KOG0439|consen 66 STVEIEVTHQPFEKSPPDFKSRHKFLIQSLKAPP 99 (218)
T ss_pred CcEEEEEEeccCccCchhhcccceEEEEEEecCC
Confidence 999999988872 23222 4577777755543
No 37
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=51.21 E-value=52 Score=29.07 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=23.9
Q ss_pred CceEEEEEEEeCCccCcEEeeeEEEEEEE
Q 005768 33 GEPVKVDIEFKNPLQIPISISNISLICEL 61 (678)
Q Consensus 33 gEpi~V~V~L~NPL~ipL~Ls~I~L~~~f 61 (678)
+-.+.+.+.++||-.+|+.+.++.-...+
T Consensus 14 ~~~~~l~l~v~NPN~~~l~~~~~~y~l~~ 42 (100)
T smart00769 14 EIEIVLKVKVQNPNPFPIPVNGLSYDLYL 42 (100)
T ss_pred EEEEEEEEEEECCCCCccccccEEEEEEE
Confidence 34588899999999999999999855443
No 38
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=50.99 E-value=66 Score=32.13 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.2
Q ss_pred ccCccEEEEEEEEEecccccccce
Q 005768 195 AYAGDLRHLVLELKNQSDFSVKNL 218 (678)
Q Consensus 195 ll~GEi~~~~l~L~N~G~~pl~~l 218 (678)
+.=||+-.+.-+-+|.+..|+..-
T Consensus 89 v~pGet~~~~y~a~N~sd~~itg~ 112 (195)
T COG3175 89 VRPGETNLIFYEAENLSDKPITGQ 112 (195)
T ss_pred eccCceEEEEEEEecCCCCCceeE
Confidence 567999999999999999988775
No 39
>PF13584 BatD: Oxygen tolerance
Probab=50.37 E-value=4.3e+02 Score=30.05 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=56.1
Q ss_pred EEEcCCceEEEE---EEEEeCceEEEEEEEEEEEEceeee-eEE-eeeecccccccccccccccCCCCCceEEEEE--cC
Q 005768 108 ISLGGAETILVQ---LMVTPKVEGILKIVGVRWRLSGSLV-GVY-NFESNLVKKKIAKGRRKVKSSPSNDLKFIVI--KS 180 (678)
Q Consensus 108 i~L~p~Etk~V~---L~v~P~~~G~L~I~Gv~~~L~~~v~-g~~-~fe~kg~RL~~tk~r~~~~y~pD~rL~~~Vi--~~ 180 (678)
..+.+..-..+. ..++|.++|.|.|-..++++.-... ++. -|.....+ .+.-...+ ..+.++|. |.
T Consensus 187 ~~i~G~~y~~~~~~~~~l~P~ksG~l~I~~~~~~~~~~~~~~~~~~fg~~~~~-----~~~~~~~s--~~~~i~V~plP~ 259 (484)
T PF13584_consen 187 ERINGRRYRVIELRRYALFPQKSGTLTIPPATFEVTVSDPSGRRDFFGGNFGR-----SRPVSISS--EPLTITVKPLPA 259 (484)
T ss_pred EEECCEEEEEEEEEEEEEEeCCceeEEecCEEEEEEEecccCccCcccccccc-----ceeEEecC--CCeEEEeccCCc
Confidence 346665555555 6799999999999998888754221 110 11110000 01111222 33444443 33
Q ss_pred -------CCe---EEEEEecCCccccCccEEEEEEEEEeccccc
Q 005768 181 -------LPK---LEGLIHPLPERAYAGDLRHLVLELKNQSDFS 214 (678)
Q Consensus 181 -------~P~---L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~p 214 (678)
.|. +++...--|..+-.||....+|+|+=.|..+
T Consensus 260 ~~~p~~f~~aVg~f~l~~~~~~~~~~~Ge~vt~ti~i~g~Gn~~ 303 (484)
T PF13584_consen 260 EGAPADFSGAVGNFSLSQSWDPTEVKVGEPVTRTITISGEGNLP 303 (484)
T ss_pred ccCCCCcccceeEEEEEEEcCcccccCCCeEEEEEEEEEEcchh
Confidence 232 3333333367899999999999998777655
No 40
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=50.03 E-value=53 Score=36.23 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=46.7
Q ss_pred cCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCccc
Q 005768 196 YAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISI 275 (678)
Q Consensus 196 l~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L 275 (678)
.-|-.-+++++++|.|..|+.-=...+..-+|+-..+-.+.+..+|..+-- . -+.+.++..|
T Consensus 279 VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla----------------~--GL~v~d~~pI 340 (399)
T TIGR03079 279 VPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLA----------------E--GLEVDDQSAI 340 (399)
T ss_pred cCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhh----------------c--cceeCCCCCc
Confidence 346777999999999999987654444444444321112222333332210 0 1223345689
Q ss_pred CCCCeEEEEEEEEeC
Q 005768 276 QGETPLLWPLWYRAA 290 (678)
Q Consensus 276 ~pGes~~~plwlrap 290 (678)
+|||++++.+..+..
T Consensus 341 ~PGETr~v~v~aqdA 355 (399)
T TIGR03079 341 APGETVEVKMEAKDA 355 (399)
T ss_pred CCCcceEEEEEEehh
Confidence 999999999999864
No 41
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=49.99 E-value=14 Score=27.89 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.2
Q ss_pred eEEEEecceeeecCCcEEEEEE
Q 005768 625 MKVCLFSPGTYDLSNYALNWKL 646 (678)
Q Consensus 625 l~~~~~~pGvYdl~~~~~~~~~ 646 (678)
..+.|..||+|.|. ++..++.
T Consensus 5 ~nW~FT~PG~Y~l~-~~a~~~~ 25 (41)
T TIGR03769 5 ANWVFTKPGTYTLT-VQATATL 25 (41)
T ss_pred cceeeCCCeEEEEE-EEEEEEe
Confidence 57899999999998 8888777
No 42
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=48.06 E-value=1.1e+02 Score=26.14 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=36.4
Q ss_pred EEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcCCceEEE
Q 005768 39 DIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILV 118 (678)
Q Consensus 39 ~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Etk~V 118 (678)
.|.++||=.+++.++++.....+... .. +. ....+.+.+.|.++..+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~--~v---------------~~----------------~~~~~~~~i~~~~~~~v 47 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQ--RV---------------GT----------------GGSLPPFTIPARSSTTV 47 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSS--EE---------------EE----------------EEECE-EEESSSCEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCE--EE---------------EC----------------ccccCCeEECCCCcEEE
Confidence 47889999999999999988765332 11 10 11247999999999988
Q ss_pred EEEEEe
Q 005768 119 QLMVTP 124 (678)
Q Consensus 119 ~L~v~P 124 (678)
.+.+.-
T Consensus 48 ~~~v~~ 53 (101)
T PF03168_consen 48 PVPVSV 53 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 886553
No 43
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=48.03 E-value=1.4e+02 Score=29.77 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=33.4
Q ss_pred ccccceEE-eCCCceeEEEeEEEEecceeeecCCcEEEEEE
Q 005768 607 GSSASSVR-LQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 646 (678)
Q Consensus 607 g~~~~~~~-l~p~~~~~i~l~~~~~~pGvYdl~~~~~~~~~ 646 (678)
|.++.+.. |+||++.....-+.-...|.|+++...|.-+.
T Consensus 74 G~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~ 114 (181)
T PF05753_consen 74 GSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRD 114 (181)
T ss_pred CceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEEC
Confidence 55555555 99999999988888899999999988887766
No 44
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=46.86 E-value=1.3e+02 Score=27.20 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=23.1
Q ss_pred cccCCCCeEEEEEEEEeC----CCCeEEEEEEEEe
Q 005768 273 ISIQGETPLLWPLWYRAA----VPGKISLSITIYY 303 (678)
Q Consensus 273 ~~L~pGes~~~plwlrap----~~G~~~l~~LfyY 303 (678)
..|+||++.++++.|.+| ..+.+.+.|-+.+
T Consensus 68 i~v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~ 102 (118)
T PF11614_consen 68 ITVPPGETREVPVFVTAPPDALKSGSTPITFTVTD 102 (118)
T ss_dssp EEE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEE
T ss_pred eEECCCCEEEEEEEEEECHHHccCCCeeEEEEEEE
Confidence 477899999999999997 2467888888884
No 45
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=46.72 E-value=65 Score=27.90 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.6
Q ss_pred eEEEEEEecCCceEEEEEEe
Q 005768 524 NLKMTIYNSSDAAMFVRVNT 543 (678)
Q Consensus 524 pV~l~l~N~s~~~~~v~i~~ 543 (678)
.|.|.|.|.....+.|.|.-
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~ 40 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYD 40 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEe
Confidence 68899999988888888874
No 46
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=43.75 E-value=66 Score=31.04 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.7
Q ss_pred ccCccEEEEEEEEEecccccccceEEE
Q 005768 195 AYAGDLRHLVLELKNQSDFSVKNLKMK 221 (678)
Q Consensus 195 ll~GEi~~~~l~L~N~G~~pl~~l~v~ 221 (678)
++..-.+-+.|.|+|.|..++++|++.
T Consensus 81 ~~s~~mvsIql~ftN~s~~~i~~I~i~ 107 (145)
T PF14796_consen 81 LYSPSMVSIQLTFTNNSDEPIKNIHIG 107 (145)
T ss_pred CCCCCcEEEEEEEEecCCCeecceEEC
Confidence 577888889999999999999999665
No 47
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=43.58 E-value=72 Score=28.27 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=17.1
Q ss_pred ceEEeCCCceeEEEeEEEEecceeeecCC
Q 005768 611 SSVRLQPMSTTDIAMKVCLFSPGTYDLSN 639 (678)
Q Consensus 611 ~~~~l~p~~~~~i~l~~~~~~pGvYdl~~ 639 (678)
....|+||++.++.+ ....||+|++-.
T Consensus 66 ~~~~l~~g~~~~~~f--~~~~~G~y~~~C 92 (104)
T PF13473_consen 66 ISKVLPPGETATVTF--TPLKPGEYEFYC 92 (104)
T ss_dssp EEEEE-TT-EEEEEE--EE-S-EEEEEB-
T ss_pred eEEEECCCCEEEEEE--cCCCCEEEEEEc
Confidence 346799999987765 478999999864
No 48
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.59 E-value=94 Score=35.92 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=69.0
Q ss_pred CCCceEEEEeCCCeeeccCCCCceeEeEEEEEEecCCceEEEEEEecCCCCCCCCCccccCCCCCCCCCCCCCccccccc
Q 005768 498 GKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVL 577 (678)
Q Consensus 498 ~~~pi~~~l~~p~~i~HdFs~~~C~vpV~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (678)
...||.++.+-|+ |..=-=.+||+..|+|.++--.||.|++-.
T Consensus 690 e~iPlhvnadlps-----fgrVReslpvkyhLqnktdlvqdveisvep-------------------------------- 732 (809)
T KOG4386|consen 690 EAIPLHVNADLPS-----FGRVRESLPVKYHLQNKTDLVQDVEISVEP-------------------------------- 732 (809)
T ss_pred eeccceeecCCCC-----cceecccccEEEEeccccceeeeEEeeccc--------------------------------
Confidence 4467777776665 666223579999999999988888888521
Q ss_pred ccceecccCCcccccccccccccCceEEeccccceEEeCCCceeEEEeEEEEecceeeecCCcEEEEEE
Q 005768 578 TDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 646 (678)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~f~w~g~~~~~~~l~p~~~~~i~l~~~~~~pGvYdl~~~~~~~~~ 646 (678)
+--||++|.-+.++.+-||...++-....-+.+|--+|- .+++++
T Consensus 733 ----------------------sDaFMFSGlkqirlriLPGteqemlynfypLmAGyqqlP--slninl 777 (809)
T KOG4386|consen 733 ----------------------SDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLP--SLNINL 777 (809)
T ss_pred ----------------------chhheecccceEEEEEcCCCceEEEEEEehhhchhhhCC--cccccC
Confidence 126999999999999999999999999999999987764 555555
No 49
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=39.75 E-value=1.4e+02 Score=27.76 Aligned_cols=84 Identities=10% Similarity=0.137 Sum_probs=45.3
Q ss_pred CccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCC--Ccceeec
Q 005768 192 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKM--PQAVFSF 269 (678)
Q Consensus 192 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~--~~~v~~l 269 (678)
...+--|+.+.+.|.|.|.+..+++-- +.... ..+ .......| .....-. +..+. -...+..
T Consensus 20 dL~~~P~q~~~l~v~i~N~s~~~~tv~-v~~~~--A~T---n~nG~I~Y------~~~~~~~----d~sl~~~~~~~v~~ 83 (121)
T PF06030_consen 20 DLKVKPGQKQTLEVRITNNSDKEITVK-VSANT--ATT---NDNGVIDY------SQNNPKK----DKSLKYPFSDLVKI 83 (121)
T ss_pred EEEeCCCCEEEEEEEEEeCCCCCEEEE-EEEee--eEe---cCCEEEEE------CCCCccc----CcccCcchHHhccC
Confidence 344667999999999999998776542 11111 111 00000111 1000000 00000 0123334
Q ss_pred CCCcccCCCCeEEEEEEEEeCC
Q 005768 270 PEGISIQGETPLLWPLWYRAAV 291 (678)
Q Consensus 270 p~~~~L~pGes~~~plwlrap~ 291 (678)
|....|+||+++++++.|.-|.
T Consensus 84 ~~~Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 84 PKEVTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred CcEEEECCCCEEEEEEEEEcCC
Confidence 5558999999999999999983
No 50
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=38.49 E-value=1.6e+02 Score=31.39 Aligned_cols=76 Identities=22% Similarity=0.180 Sum_probs=48.9
Q ss_pred CceeEeEEEEEEecCCceEEEEEEecCCCCCCCCCccccCCCCCCCCCCCCCcccccccccceecccCCcc-cccccccc
Q 005768 519 SFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLN-QVKRSSLL 597 (678)
Q Consensus 519 ~~C~vpV~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 597 (678)
.-...-.+++|+|..+..++|+|.-.-..+ =..+|||.-.-+.. +..
T Consensus 240 ~~~~~~~~itv~N~~~~~v~v~v~d~iPvs---------------------------~~~~I~V~~~~~~~~~~~----- 287 (317)
T PF13598_consen 240 QRRTYEYTITVRNNKDEPVTVTVEDQIPVS---------------------------EDEDIKVELLEPPEPNED----- 287 (317)
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEeCCCCC---------------------------CCceEEEEEcCCCCCccc-----
Confidence 455778899999999999998888332111 11234443322111 111
Q ss_pred cccCceEEeccccceEEeCCCceeEEEeEEEEecc
Q 005768 598 ESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSP 632 (678)
Q Consensus 598 ~~~~~f~w~g~~~~~~~l~p~~~~~i~l~~~~~~p 632 (678)
+- .|...-++.|+||++.+|.+...+-.|
T Consensus 288 ~~------~g~~~W~~~l~~g~~~~l~~~y~v~~P 316 (317)
T PF13598_consen 288 EK------DGILEWKVTLPPGESRTLEFSYEVEYP 316 (317)
T ss_pred CC------CCEEEEEEEECCCCEEEEEEEEEEEcC
Confidence 11 256666799999999999999888765
No 51
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=37.05 E-value=1.7e+02 Score=25.30 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=24.6
Q ss_pred eEcCceEEEEEEEeCCccCcEEeeeEEEEEEE
Q 005768 30 CVAGEPVKVDIEFKNPLQIPISISNISLICEL 61 (678)
Q Consensus 30 ~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f 61 (678)
+.+|++..+.|..++-..-++....-.+.++.
T Consensus 17 ~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i 48 (101)
T PF00630_consen 17 AVVGEPATFTVDTRDAGGNPVSSGGDEFQVTI 48 (101)
T ss_dssp EETTSEEEEEEEETTTTSSBEESTSSEEEEEE
T ss_pred eECCCcEEEEEEEccCCCCccccCCceeEEEE
Confidence 48999999999999998888776544444444
No 52
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=36.78 E-value=1e+02 Score=27.85 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=39.7
Q ss_pred cccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 005768 194 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 273 (678)
Q Consensus 194 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~ 273 (678)
.+..|. ..++|+++|.|..|+. +-||=+|+-.. ..|.|....++.... .+..... .
T Consensus 14 ~ln~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~E~N----~aL~FDR~~A~G~RL---------dIpaGTa------v 69 (101)
T TIGR00192 14 TINEGR-KTVSVKVKNTGDRPIQ----VGSHFHFFEVN----RALDFDRELAFGMRL---------DIPSGTA------V 69 (101)
T ss_pred EeCCCC-cEEEEEEEeCCCcceE----EccccchhhcC----cceeecHhhhcCccc---------ccCCCCe------E
Confidence 445554 5689999999999875 34554454322 223333222221111 1111233 4
Q ss_pred ccCCCCeEEEEEEEEe
Q 005768 274 SIQGETPLLWPLWYRA 289 (678)
Q Consensus 274 ~L~pGes~~~plwlra 289 (678)
..+||+++++.|.=.|
T Consensus 70 RFEPG~~k~V~LV~~g 85 (101)
T TIGR00192 70 RFEPGEEKSVELVAIG 85 (101)
T ss_pred eECCCCeEEEEEEEcc
Confidence 5579999999986544
No 53
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=36.50 E-value=2.4e+02 Score=30.42 Aligned_cols=123 Identities=9% Similarity=-0.084 Sum_probs=66.5
Q ss_pred eEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccC-CCCCccch-hh-hhccccc-----cccc
Q 005768 183 KLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNR-DDMTKEFP-AC-LQKMTNA-----EQSV 254 (678)
Q Consensus 183 ~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~-~~~~~~~p-~~-l~~~~~~-----e~~~ 254 (678)
-+.+.|.+= ..+.-||...++|-+-|.|..+.+-.-++.+ ++=+..+.. ........ .. ..+.... +...
T Consensus 157 gv~~sF~gp-~~V~~Ge~F~w~v~ivN~S~~~r~L~l~~~~-~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~v~~en~~~ 234 (306)
T PF12735_consen 157 GVTFSFSGP-SSVKVGEPFSWKVFIVNRSSSPRKLALYVPP-RRRRNDERSNSPPPNPSSSSNLNNKQIADAVTDENIVQ 234 (306)
T ss_pred CeEEEEeCC-ceEecCCeEEEEEEEEECCCCCeeEEEEecC-ccccccccccCCCCCcccccccccccccccceehhHHH
Confidence 345555554 8899999999999999999988776644433 211111110 00000000 00 0000000 0000
Q ss_pred -cCCCCCCC-CcceeecCC---CcccCCCCeEEEEEEEEeCCCCeEEEEEEEEeeeCC
Q 005768 255 -AGGNFNKM-PQAVFSFPE---GISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGD 307 (678)
Q Consensus 255 -~~~~~~~~-~~~v~~lp~---~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~~ 307 (678)
........ ...++.+.. -+.|.||+.+...|-+-|-.+|.+.|.-|=.+....
T Consensus 235 ~~~~~~~~~~~~gli~LsnDiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t 292 (306)
T PF12735_consen 235 AMQKYSSVEESTGLICLSNDIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVVDLNT 292 (306)
T ss_pred HhhhhcccccCCceEEecccccccccCCCceEEEEEEEEEeccceEeecceEEEECCC
Confidence 00011101 223444432 258999999999999999889999887666554443
No 54
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=34.43 E-value=2e+02 Score=32.77 Aligned_cols=121 Identities=14% Similarity=0.135 Sum_probs=70.1
Q ss_pred CCceEEEEEcCCCeEEE--EEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCC----CCC------
Q 005768 170 SNDLKFIVIKSLPKLEG--LIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRD----DMT------ 237 (678)
Q Consensus 170 D~rL~~~Vi~~~P~L~v--~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~----~~~------ 237 (678)
.-.+++.|++..|...+ .++..--+.=+|.+....|+++|.+..|+.+=-.-..-...+++.+.. ..+
T Consensus 133 ~l~I~I~~Tk~v~~~g~p~~id~~l~Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lEG~~~v~~~~~~~~~~~~~~kkF 212 (438)
T PF04425_consen 133 PLEIEIYVTKDVGKPGKPPEIDPSLKEYTQGDIIHGYVTIENTSSKPIPFDMFYVSLEGTISVVDSKSPSSKKPRTVKKF 212 (438)
T ss_pred ceEEEEEEeccCCCCCCCcccCcccccccCCCEEEEEEEEEECCCCCcccceEEEEEEEEEEEcccccccccccHHHHHH
Confidence 45667778888877766 111222357789999999999999999887632333333355555541 111
Q ss_pred cc---chhhhhcccccc---ccccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeC
Q 005768 238 KE---FPACLQKMTNAE---QSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 290 (678)
Q Consensus 238 ~~---~p~~l~~~~~~e---~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap 290 (678)
|. +.++-.+..... ...+.+...-..+..+.||....|+||.+...+|+++=|
T Consensus 213 L~M~D~sASws~~~i~~~~~~~~~~~~~Dp~Dgt~lgl~~~r~l~p~~~Yk~fF~FkiP 271 (438)
T PF04425_consen 213 LRMFDFSASWSYANIDRLVGDNYCPGEVDPYDGTYLGLPNKRILEPGVKYKKFFTFKIP 271 (438)
T ss_pred HHhhcceecccccccccccccccCCccccCCCCeeEeCCCCceecCCCeEeceeEEeCC
Confidence 00 001100000000 000011111123467778888999999999999999987
No 55
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=33.47 E-value=1.2e+02 Score=27.45 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=38.9
Q ss_pred ccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcc
Q 005768 195 AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 274 (678)
Q Consensus 195 ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~ 274 (678)
+..| ..+++|+++|.|..|+. +-||=+|+-.. ..|.|....++.... .+..... ..
T Consensus 15 lN~g-r~~~~l~V~NtGDRpIQ----VGSH~HF~E~N----~aL~FDR~~A~G~RL---------dIpaGTa------vR 70 (101)
T cd00407 15 LNAG-REAVTLKVKNTGDRPIQ----VGSHYHFFEVN----PALKFDREKAYGMRL---------DIPAGTA------VR 70 (101)
T ss_pred eCCC-CCEEEEEEEeCCCcceE----EccccchhhcC----ccccccHHHccccee---------cccCCCe------EE
Confidence 4444 45789999999999875 34554444322 223333322221111 1111223 45
Q ss_pred cCCCCeEEEEEEEEe
Q 005768 275 IQGETPLLWPLWYRA 289 (678)
Q Consensus 275 L~pGes~~~plwlra 289 (678)
.+||+++++.|.=.|
T Consensus 71 FEPG~~k~V~LV~~~ 85 (101)
T cd00407 71 FEPGEEKEVELVPIG 85 (101)
T ss_pred ECCCCeEEEEEEEcc
Confidence 689999999986443
No 56
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=32.03 E-value=1.2e+02 Score=27.45 Aligned_cols=71 Identities=17% Similarity=0.103 Sum_probs=33.7
Q ss_pred ccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcc
Q 005768 195 AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 274 (678)
Q Consensus 195 ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~ 274 (678)
+..| ..+++|+++|.|..|+. +-||=+|+- .+..|+|....++.....+ ..... ..
T Consensus 14 lN~g-r~~~~l~V~N~GDRPIQ----VGSH~HF~E----~N~aL~FDR~~A~G~RLdI---------PaGTa------vR 69 (100)
T PF00699_consen 14 LNAG-RERITLEVTNTGDRPIQ----VGSHYHFFE----VNPALEFDREAAYGMRLDI---------PAGTA------VR 69 (100)
T ss_dssp TTTT-SEEEEEEEEE-SSS-EE----EETTS-GGG----S-TTEES-HHHHTTEEE-S---------STT-E------EE
T ss_pred ecCC-CcEEEEEEEeCCCcceE----EccccCHHH----HhHHhhhhHHHhCCcccCc---------CCCCe------EE
Confidence 3444 37899999999999874 345544421 1222444333332221111 11233 35
Q ss_pred cCCCCeEEEEEEEEe
Q 005768 275 IQGETPLLWPLWYRA 289 (678)
Q Consensus 275 L~pGes~~~plwlra 289 (678)
.+||+++++.|.=-|
T Consensus 70 FEPG~~k~V~LV~~g 84 (100)
T PF00699_consen 70 FEPGDTKEVELVPIG 84 (100)
T ss_dssp E-TT-EEEEEEEE-S
T ss_pred ECCCCcEEEEEEEcc
Confidence 579999999886443
No 57
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=30.94 E-value=2e+02 Score=26.09 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=18.8
Q ss_pred eEEeccccceEEeCCCceeEEEeEEEEecce
Q 005768 603 FIWSGSSASSVRLQPMSTTDIAMKVCLFSPG 633 (678)
Q Consensus 603 f~w~g~~~~~~~l~p~~~~~i~l~~~~~~pG 633 (678)
+.|.+ ....++|+|+++..+++.+.+...-
T Consensus 59 ~~l~~-~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 59 AELQG-PENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp -EE-E-S--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred eEEEC-CCcceEECCCCEEEEEEEEEECHHH
Confidence 44545 6678899999999999999887654
No 58
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.36 E-value=2.3e+02 Score=36.02 Aligned_cols=101 Identities=23% Similarity=0.196 Sum_probs=58.4
Q ss_pred cccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccc-----cCCC-----CCcc-cccccccccccccc
Q 005768 23 KFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEME-----SDSN-----SSTT-ELQNDEESKLLTTT 91 (678)
Q Consensus 23 ~~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~-----s~~~-----~~~~-~~~~~~~~~~~~~~ 91 (678)
.+.-.+...+|..-.+.++|.||=++||.|.=|-|..--.++ ... .+.. ..++ +........+|.+.
T Consensus 689 ~~l~FPaTalg~~~i~~iTL~NPs~vPV~lQ~iPL~lYpdpe--~lV~Lt~r~~~~ev~misltT~eFtlk~~sa~P~~~ 766 (1626)
T KOG3620|consen 689 PILPFPATALGQVQIQWITLTNPSQVPVLLQYIPLVLYPDPE--FLVRLTQRSLPHEVIMISLTTCEFTLKEVSALPEAY 766 (1626)
T ss_pred CCCCCchhhccceeEEEEEecCCCCCceEeeeeeecccCCHH--HHHHHHHhhccceeEEEeeeeeEEEeeccccCchhh
Confidence 355678888999999999999999999999988775421110 000 0000 0000 00000111122110
Q ss_pred cccCCCCCceeeeeeeEEEcCCceEEEEEEEEeCceE
Q 005768 92 GEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEG 128 (678)
Q Consensus 92 ~~~~~~~~~f~~~~~~i~L~p~Etk~V~L~v~P~~~G 128 (678)
.+..+-+.|- +..+.|.|+|+++|.+..+|..-+
T Consensus 767 -g~~~e~sR~~--iL~liLkPgekkrv~v~FtP~dy~ 800 (1626)
T KOG3620|consen 767 -GLNHEMSRYN--ILPLILKPGEKKRVPVTFTPQDYE 800 (1626)
T ss_pred -cccccccccc--cceeeecCccceeeeeeeeccCcc
Confidence 0111112222 579999999999999999997644
No 59
>PRK13203 ureB urease subunit beta; Reviewed
Probab=28.80 E-value=1.1e+02 Score=27.71 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=36.9
Q ss_pred EEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCCC
Q 005768 200 LRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGET 279 (678)
Q Consensus 200 i~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGe 279 (678)
...++|+++|.|..|+. +-||=+||-.. ..|+|....++.... .+..... ...+||+
T Consensus 19 r~~~~l~V~NtGDRPIQ----VGSH~HF~E~N----~aL~FDR~~A~G~RL---------dIpaGTa------vRFEPG~ 75 (102)
T PRK13203 19 RETVTLTVANTGDRPIQ----VGSHYHFFEVN----PALSFDREAARGMRL---------NIPAGTA------VRFEPGQ 75 (102)
T ss_pred CCEEEEEEEeCCCCceE----EccccchhhcC----cchhccHhhhcCccc---------ccCCCCe------EeECCCC
Confidence 35689999999999875 34554444322 223332222221111 1112233 4557999
Q ss_pred eEEEEEEEEe
Q 005768 280 PLLWPLWYRA 289 (678)
Q Consensus 280 s~~~plwlra 289 (678)
++++.|.=.|
T Consensus 76 ~k~V~LV~~g 85 (102)
T PRK13203 76 TREVELVPLA 85 (102)
T ss_pred eEEEEEEEcc
Confidence 9999986443
No 60
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=27.28 E-value=2.9e+02 Score=27.66 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=28.8
Q ss_pred ceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEE
Q 005768 265 AVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI 301 (678)
Q Consensus 265 ~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lf 301 (678)
-.|.+|.+..|+||++.++.|-..=|..|.-...+-|
T Consensus 118 vs~tlp~wqslapG~s~~~~~~YyLPiSgPsN~tv~~ 154 (180)
T PF06483_consen 118 VSFTLPAWQSLAPGASVELDMVYYLPISGPSNFTVNI 154 (180)
T ss_pred EEEECCCccccCCCCEEEEeEEEEeccCCCceEEEEE
Confidence 4566788999999999999998877766655555554
No 61
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=26.84 E-value=1.2e+02 Score=27.36 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.0
Q ss_pred eeeeEEEcCCceEEEEEEEEeCc
Q 005768 104 SEVDISLGGAETILVQLMVTPKV 126 (678)
Q Consensus 104 ~~~~i~L~p~Etk~V~L~v~P~~ 126 (678)
....|+++|++++.|.+.+.|..
T Consensus 60 ~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 60 SPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp --EEEEE-TTEEEEEEEEEE--G
T ss_pred CCCeEEECCCCEEEEEEEEEehh
Confidence 35899999999999999999843
No 62
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=26.12 E-value=4.7e+02 Score=23.27 Aligned_cols=77 Identities=13% Similarity=0.266 Sum_probs=48.6
Q ss_pred cCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCccc
Q 005768 196 YAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISI 275 (678)
Q Consensus 196 l~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L 275 (678)
-.+...++.+.+.|.+..+++++.+...-|.-+.+. +.. +.+..|
T Consensus 21 ~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~----------------------------------l~~-~s~~~i 65 (115)
T PF02883_consen 21 PNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQ----------------------------------LQP-PSSSTI 65 (115)
T ss_dssp CETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEE----------------------------------EEE-SS-SSB
T ss_pred CCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEE----------------------------------EeC-CCCCee
Confidence 367888999999999999999986664443111111 001 224578
Q ss_pred CCCCeEEEEEEEEe-----CCCCeEEEEEEEEeeeCC
Q 005768 276 QGETPLLWPLWYRA-----AVPGKISLSITIYYEMGD 307 (678)
Q Consensus 276 ~pGes~~~plwlra-----p~~G~~~l~~LfyYe~~~ 307 (678)
+||+..+-.+-+.. +......+++-+-|.-.+
T Consensus 66 ~p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vsy~~~g 102 (115)
T PF02883_consen 66 PPGQQITQVIKVENSPFSEPTPKPLKPRLRVSYNVGG 102 (115)
T ss_dssp -TTTEEEEEEEEEESS-BSTTSSTTEEEEEEEEEETT
T ss_pred CCCCeEEEEEEEEEeecccCCCCCcCeEEEEEEEECC
Confidence 88888888888877 444555677777776655
No 63
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=24.81 E-value=2.8e+02 Score=26.31 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=46.2
Q ss_pred EEEEEEeCCccC-cEEeeeEEEEE-EEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcCCc
Q 005768 37 KVDIEFKNPLQI-PISISNISLIC-ELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAE 114 (678)
Q Consensus 37 ~V~V~L~NPL~i-pL~Ls~I~L~~-~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~E 114 (678)
+|.|.+.|=+.- +|.+.|..|.| +|-..++.. +++ .+ ...+.+++.|.+
T Consensus 3 wv~i~I~n~~~~~~l~i~Na~L~~GKfy~~~~kd------------~ei--s~---------------~~v~~~~i~~~~ 53 (131)
T PF06355_consen 3 WVSIHIVNNLGSGDLKIKNAQLSWGKFYRDGNKD------------DEI--SP---------------DDVNGIVIPPGG 53 (131)
T ss_pred EEEEEEEeCCCCccEEEEccEeccCccccCCCcC------------CEe--Cc---------------cccCceEecCCC
Confidence 688999999988 99999999999 664432211 000 00 013688899988
Q ss_pred eEEEEEEEE---eC-ceEEEEEE
Q 005768 115 TILVQLMVT---PK-VEGILKIV 133 (678)
Q Consensus 115 tk~V~L~v~---P~-~~G~L~I~ 133 (678)
...|.-... |. .+|.|-+.
T Consensus 54 ~~~i~scGr~~~~sGTEGsfdl~ 76 (131)
T PF06355_consen 54 SYSICSCGREGSPSGTEGSFDLY 76 (131)
T ss_pred eEEEEEecCCCCCcCceEEEEEE
Confidence 888877766 22 46877765
No 64
>PRK13204 ureB urease subunit beta; Reviewed
Probab=24.68 E-value=2.1e+02 Score=27.84 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=40.1
Q ss_pred CccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCC
Q 005768 192 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 271 (678)
Q Consensus 192 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~ 271 (678)
+-.+..|. ..++|+++|.|..|+. +-||=+||-.. ..|.|....++.... .+.....
T Consensus 35 ~I~lN~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~EvN----~aL~FDR~~A~G~RL---------dIPAGTA----- 91 (159)
T PRK13204 35 PIEINQGR-PRTTLTVRNTGDRPIQ----IGSHFHFFEVN----RYLEFDRSKAFGLRL---------DIPANTA----- 91 (159)
T ss_pred CeEeCCCC-cEEEEEEEeCCCCceE----eccccchhhcC----ccccccHhhhcCccc---------ccCCCCe-----
Confidence 33445553 4589999999999974 34554454322 223333222222111 1112233
Q ss_pred CcccCCCCeEEEEEEEEe
Q 005768 272 GISIQGETPLLWPLWYRA 289 (678)
Q Consensus 272 ~~~L~pGes~~~plwlra 289 (678)
...+||+++++.|.=.|
T Consensus 92 -VRFEPG~~k~V~LV~~g 108 (159)
T PRK13204 92 -VRFEPGDEKEVTLVPFA 108 (159)
T ss_pred -EeECCCCeeEEEEEEcc
Confidence 45579999999987543
No 65
>PRK13198 ureB urease subunit beta; Reviewed
Probab=23.99 E-value=2.2e+02 Score=27.67 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=41.0
Q ss_pred CCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecC
Q 005768 191 LPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP 270 (678)
Q Consensus 191 lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp 270 (678)
-+-.+..|- ..++|+++|.|..|+. +-||=+||-.. ..|.|....++.... .+.....
T Consensus 39 g~I~lN~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~EvN----~aL~FDR~~A~G~RL---------dIPAGTA---- 96 (158)
T PRK13198 39 TPITFNENK-PVTKVKVRNTGDRPIQ----VGSHFHFFEVN----RALEFDRAAAYGKRL---------NISSTTA---- 96 (158)
T ss_pred CCeEeCCCC-cEEEEEEEeCCCCceE----eccccchhhcC----ccccccHhhhcCccc---------ccCCCCe----
Confidence 344455554 5689999999999874 34554444322 223333222221111 1112233
Q ss_pred CCcccCCCCeEEEEEEEEe
Q 005768 271 EGISIQGETPLLWPLWYRA 289 (678)
Q Consensus 271 ~~~~L~pGes~~~plwlra 289 (678)
...+||+++++.|.=.|
T Consensus 97 --VRFEPG~~k~V~LV~~g 113 (158)
T PRK13198 97 --IRFEPGDETEVPLIPFG 113 (158)
T ss_pred --EeeCCCCeeEEEEEEcc
Confidence 45579999999987544
No 66
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=23.27 E-value=8.7e+02 Score=25.35 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=85.4
Q ss_pred cceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCC--ccccCCCCCcccccccccccccccccccCCCCCceeee
Q 005768 27 SNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSD--EMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 104 (678)
Q Consensus 27 ~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 104 (678)
...+.+||.|..-|-+.|.-..+ +.++++.++...... ... +.+.....
T Consensus 7 fG~iylGEtF~~~l~~~N~s~~~--v~~v~ikvemqT~s~~~r~~---------L~~~~~~~------------------ 57 (249)
T PF06159_consen 7 FGSIYLGETFSCYLSVNNDSNKP--VRNVRIKVEMQTPSQSLRLP---------LSDNENSD------------------ 57 (249)
T ss_pred cCCEeecCCEEEEEEeecCCCCc--eEEeEEEEEEeCCCCCcccc---------CCCCcccc------------------
Confidence 45678999999999999965555 478888887776643 110 00000000
Q ss_pred eeeEEEcCCceEEEEEEEEeCceEEEEE-EEEEEEEceeeeeEEeeeecccccccccccccccCCCCCceEEEEEcCCCe
Q 005768 105 EVDISLGGAETILVQLMVTPKVEGILKI-VGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPK 183 (678)
Q Consensus 105 ~~~i~L~p~Etk~V~L~v~P~~~G~L~I-~Gv~~~L~~~v~g~~~fe~kg~RL~~tk~r~~~~y~pD~rL~~~Vi~~~P~ 183 (678)
...-.|.|+++....+.--=++.|.-.+ ..|.|.-.....|+ + ....+--+|.|.+|+ -
T Consensus 58 ~~~~~L~p~~~l~~iv~~~lkE~G~h~L~c~VsY~~~~~~~g~--------~-----------~tfRK~ykF~v~~PL-~ 117 (249)
T PF06159_consen 58 SPVASLAPGESLDFIVSHELKELGNHTLVCTVSYTDPTETSGE--------R-----------RTFRKFYKFQVLNPL-S 117 (249)
T ss_pred ccccccCCCCeEeEEEEEEeeecCceEEEEEEEEecCcccCCc--------c-----------ceEeeeeEEeCCCCc-E
Confidence 0123588999888888888888885444 34445544111111 0 001123445665443 2
Q ss_pred EEEEEecCCc--cccCccEEEEEEEEEecccccccceEEEe
Q 005768 184 LEGLIHPLPE--RAYAGDLRHLVLELKNQSDFSVKNLKMKV 222 (678)
Q Consensus 184 L~v~~~~lP~--~ll~GEi~~~~l~L~N~G~~pl~~l~v~~ 222 (678)
+.-++..++. ..-..+..-+.+.|+|++..|+--=+|..
T Consensus 118 VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~l 158 (249)
T PF06159_consen 118 VKTKVYNLEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKL 158 (249)
T ss_pred EEEEEEecCCccccccceeEEEEEEEEecCCCceEEEEEEe
Confidence 2225555544 24666777888899999988865544444
No 67
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=23.12 E-value=1.6e+02 Score=26.41 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=19.1
Q ss_pred EeccccceEEeCCCceeEEEeEEEEec
Q 005768 605 WSGSSASSVRLQPMSTTDIAMKVCLFS 631 (678)
Q Consensus 605 w~g~~~~~~~l~p~~~~~i~l~~~~~~ 631 (678)
+.......++|+||++.+|.+.+-...
T Consensus 56 ~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 56 TVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred eEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 778889999999999999999988755
No 68
>PRK13205 ureB urease subunit beta; Reviewed
Probab=22.14 E-value=2.3e+02 Score=27.52 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=38.7
Q ss_pred cccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 005768 194 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 273 (678)
Q Consensus 194 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~ 273 (678)
.+..| ...++|+++|.|..|+. +-||=+||-.. ..|.|....++..-. .+..... .
T Consensus 14 elN~G-R~~i~L~V~NtGDRPIQ----VGSHyHF~EvN----~AL~FDR~~A~G~RL---------dIPAGTA------V 69 (162)
T PRK13205 14 TGNVG-REAKTIEIINTGDRPVQ----IGSHFHFAEVN----PSISFDRSEGYGFRL---------DIPSGTA------V 69 (162)
T ss_pred EeCCC-CcEEEEEEEeCCCCceE----eccccchhhcC----ccccccHHHhcCccc---------ccCCCCe------E
Confidence 34444 34589999999999975 34564454322 223333322222111 1111233 4
Q ss_pred ccCCCCeEEEEEEEE
Q 005768 274 SIQGETPLLWPLWYR 288 (678)
Q Consensus 274 ~L~pGes~~~plwlr 288 (678)
..+||+++++.|.=.
T Consensus 70 RFEPGe~ktV~LV~i 84 (162)
T PRK13205 70 RLEPGDARTVNLVAI 84 (162)
T ss_pred eECCCCeEEEEEEEc
Confidence 557999999998643
No 69
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=22.05 E-value=1.6e+02 Score=26.07 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=45.0
Q ss_pred CCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecC
Q 005768 191 LPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP 270 (678)
Q Consensus 191 lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp 270 (678)
++..+.-|+-..+.++++|.+..+++++.+...-- -..+.. +... +. ....
T Consensus 7 ~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~--~v~ytG----------~~~~---~~-----------~~~~--- 57 (107)
T PF00927_consen 7 LPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAF--TVEYTG----------LTRD---QF-----------KKEK--- 57 (107)
T ss_dssp EESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEE--EEECTT----------TEEE---EE-----------EEEE---
T ss_pred ECCCccCCCCEEEEEEEEeCCcCccccceeEEEEE--EEEECC----------cccc---cE-----------eEEE---
Confidence 35556799999999999999999999986664321 111111 0000 00 0001
Q ss_pred CCcccCCCCeEEEEEEEEeCCCCe
Q 005768 271 EGISIQGETPLLWPLWYRAAVPGK 294 (678)
Q Consensus 271 ~~~~L~pGes~~~plwlrap~~G~ 294 (678)
....|+||++.++.+.+.....|.
T Consensus 58 ~~~~l~p~~~~~~~~~i~p~~yG~ 81 (107)
T PF00927_consen 58 FEVTLKPGETKSVEVTITPSQYGP 81 (107)
T ss_dssp EEEEE-TTEEEEEEEEE-HHSHEE
T ss_pred cceeeCCCCEEEEEEEEEceeEec
Confidence 124889999999999998876655
No 70
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=21.96 E-value=2.1e+02 Score=28.15 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=12.6
Q ss_pred ccEEEEEEEEEecccccccc
Q 005768 198 GDLRHLVLELKNQSDFSVKN 217 (678)
Q Consensus 198 GEi~~~~l~L~N~G~~pl~~ 217 (678)
|.-.+..|+|+|.|..++..
T Consensus 29 ~~c~~~~ltl~n~~~~~~~~ 48 (164)
T PF03173_consen 29 ASCFRAELTLTNPGDAPLPK 48 (164)
T ss_dssp G-EEEEEEEEEE-SS-B---
T ss_pred ccceEEEEEEEcCCCccCCC
Confidence 67788999999999888665
No 71
>PRK13201 ureB urease subunit beta; Reviewed
Probab=21.52 E-value=2.6e+02 Score=26.61 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=39.1
Q ss_pred cccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCc
Q 005768 194 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 273 (678)
Q Consensus 194 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~ 273 (678)
.+..| ...++|+++|.|..|+. +-||=+||-.. ..|.|....++.... .+..... .
T Consensus 14 ~lN~g-r~~~~l~V~NtGDRPIQ----VGSHyHF~EvN----~aL~FDR~~A~G~RL---------dIPAGTA------V 69 (136)
T PRK13201 14 EINNH-HPETVIEVENTGDRPIQ----VGSHFHFYEAN----AALDFEREMAYGKHL---------DIPAGAA------V 69 (136)
T ss_pred EeCCC-CCEEEEEEEeCCCcceE----eccccchhhcC----ccccccHhhhcCccc---------ccCCCCe------E
Confidence 34444 45689999999999975 34554454322 223332222221111 1112233 4
Q ss_pred ccCCCCeEEEEEEEEe
Q 005768 274 SIQGETPLLWPLWYRA 289 (678)
Q Consensus 274 ~L~pGes~~~plwlra 289 (678)
..+||+++++.|.=.|
T Consensus 70 RFEPG~~k~V~LV~ig 85 (136)
T PRK13201 70 RFEPGDKKEVQLVEYA 85 (136)
T ss_pred eECCCCeEEEEEEEcc
Confidence 5579999999987543
No 72
>PF14742 GDE_N_bis: N-terminal domain of (some) glycogen debranching enzymes
Probab=20.74 E-value=2.7e+02 Score=27.84 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.7
Q ss_pred ccccceEEeCCCceeEEEeEE
Q 005768 607 GSSASSVRLQPMSTTDIAMKV 627 (678)
Q Consensus 607 g~~~~~~~l~p~~~~~i~l~~ 627 (678)
|...+++.|+|+++..+.++|
T Consensus 174 ~~~~~~l~L~P~~~~~~~l~V 194 (194)
T PF14742_consen 174 GRARWRLDLPPGESWSVSLRV 194 (194)
T ss_pred CEEEEEEEECCCCEEEEEEEC
Confidence 556778889999998888764
Done!