Query 005768
Match_columns 678
No_of_seqs 139 out of 171
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:57:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsv_A Uncharacterized protein 96.0 0.16 5.6E-06 50.3 16.1 180 21-304 6-205 (220)
2 1vjj_A Protein-glutamine gluta 94.8 2.4 8.1E-05 48.9 21.9 133 104-302 536-675 (692)
3 2q3z_A Transglutaminase 2; tra 94.3 2.8 9.4E-05 48.3 20.8 132 104-302 528-669 (687)
4 3idu_A Uncharacterized protein 94.1 0.23 7.9E-06 45.3 9.4 91 175-305 10-100 (127)
5 2xzz_A Protein-glutamine gamma 93.9 0.08 2.7E-06 46.5 5.8 73 24-133 10-82 (102)
6 1g0d_A Protein-glutamine gamma 93.6 5 0.00017 46.2 21.2 131 105-303 527-667 (695)
7 1ex0_A Coagulation factor XIII 92.7 4.3 0.00015 47.0 19.0 131 104-303 571-711 (731)
8 1g0d_A Protein-glutamine gamma 91.8 0.6 2E-05 53.7 10.5 91 24-152 589-682 (695)
9 1ex0_A Coagulation factor XIII 90.7 1.1 3.8E-05 51.8 11.3 92 24-152 634-726 (731)
10 2q3z_A Transglutaminase 2; tra 89.6 0.46 1.6E-05 54.7 7.1 90 25-151 592-684 (687)
11 1vjj_A Protein-glutamine gluta 88.1 1.1 3.7E-05 51.7 8.6 92 24-151 598-690 (692)
12 3isy_A Bsupi, intracellular pr 86.9 6.1 0.00021 35.5 11.2 77 32-135 16-100 (120)
13 2l0d_A Cell surface protein; s 86.7 5.7 0.00019 35.4 10.8 85 181-304 2-87 (114)
14 1row_A SSP-19, MSP-domain prot 86.5 2.4 8.1E-05 37.5 8.2 65 202-307 18-82 (109)
15 1m1s_A WR4; structural genomic 84.8 2.7 9.2E-05 37.6 7.7 65 202-307 26-90 (116)
16 2ys4_A Hydrocephalus-inducing 84.5 1.3 4.6E-05 39.4 5.7 71 194-306 36-107 (122)
17 2e6j_A Hydin protein; PAPD, st 83.9 1.1 3.8E-05 38.9 4.7 76 195-306 22-97 (112)
18 2e6j_A Hydin protein; PAPD, st 83.2 2.6 8.7E-05 36.5 6.9 84 21-141 13-96 (112)
19 2ys4_A Hydrocephalus-inducing 79.7 7.6 0.00026 34.3 8.8 65 24-129 31-95 (122)
20 3idu_A Uncharacterized protein 75.0 20 0.00068 32.3 10.2 68 29-135 28-95 (127)
21 3qbt_B Inositol polyphosphate 74.0 4.2 0.00014 37.3 5.5 76 180-289 23-100 (140)
22 1z9l_A Vesicle-associated memb 73.8 18 0.00063 32.2 9.7 70 198-306 26-98 (128)
23 1wic_A Hypothetical protein ri 73.0 3.5 0.00012 38.5 4.8 69 198-305 34-102 (152)
24 3but_A Uncharacterized protein 72.5 13 0.00044 34.0 8.4 27 35-61 19-45 (136)
25 2qsv_A Uncharacterized protein 69.3 85 0.0029 30.4 19.2 155 195-404 15-186 (220)
26 3hrz_B Cobra venom factor; ser 69.3 24 0.00083 35.4 10.4 73 29-133 91-163 (252)
27 2xzz_A Protein-glutamine gamma 68.7 27 0.00094 30.2 9.2 83 181-303 5-87 (102)
28 3isy_A Bsupi, intracellular pr 63.2 22 0.00074 31.9 7.6 82 522-646 19-101 (120)
29 1yew_A Particulate methane mon 59.1 24 0.00083 37.3 8.2 77 196-290 261-337 (382)
30 1msp_A MSP, major sperm protei 57.2 19 0.00065 32.2 6.3 69 200-307 26-97 (126)
31 2cri_A Vesicle-associated memb 54.0 13 0.00045 34.2 4.8 54 198-290 30-83 (147)
32 1so9_A Cytochrome C oxidase as 49.7 17 0.00057 34.4 4.6 94 176-302 40-145 (164)
33 3hrz_B Cobra venom factor; ser 44.2 1.3E+02 0.0044 30.0 10.7 82 190-303 87-168 (252)
34 4fxk_B Complement C4-A alpha c 40.7 55 0.0019 37.9 8.3 73 29-135 163-235 (767)
35 1yyc_A LEA protein, putative l 40.5 35 0.0012 32.5 5.5 60 33-125 61-120 (174)
36 3ugu_A S-arrestin; arrestin fo 38.0 1.1E+02 0.0036 32.7 9.1 31 194-224 223-253 (380)
37 3qis_A Inositol polyphosphate 37.8 33 0.0011 36.3 5.4 75 179-287 25-101 (366)
38 2vvf_A Major capsid protein P2 36.2 3.6E+02 0.012 27.3 12.8 117 200-332 29-162 (269)
39 3rfr_A PMOB; membrane, oxidore 32.6 99 0.0034 33.1 7.8 28 106-133 108-135 (419)
40 2hr0_B Complement C3 alpha' ch 32.6 1.8E+02 0.006 34.5 11.0 73 29-133 90-163 (915)
41 3prx_B Cobra venom factor; imm 32.5 1.4E+02 0.0049 37.9 10.6 73 29-133 823-895 (1642)
42 1xo8_A AT1G01470; structural g 30.6 44 0.0015 30.8 4.3 57 35-124 40-96 (151)
43 2hr0_B Complement C3 alpha' ch 29.4 7.5E+02 0.026 29.0 16.2 83 189-303 85-168 (915)
44 4acq_A Alpha-2-macroglobulin; 29.0 1.3E+02 0.0043 37.9 9.3 71 29-133 778-848 (1451)
45 4ep8_B Urease subunit beta; al 28.1 86 0.0029 27.1 5.2 23 201-227 20-42 (101)
46 4ac7_B Urease subunit beta; hy 24.4 1.2E+02 0.004 27.3 5.6 71 195-289 21-91 (126)
47 4ubp_B Protein (urease (chain 24.4 1.2E+02 0.004 27.3 5.6 71 195-289 21-91 (126)
48 2b39_A C3; thioester, immune d 22.8 3.1E+02 0.011 34.8 11.3 73 29-133 837-910 (1661)
49 2r39_A FIXG-related protein; s 22.7 2.7E+02 0.0092 24.0 7.8 26 603-630 59-84 (118)
50 3qbt_B Inositol polyphosphate 22.5 1.3E+02 0.0043 27.2 5.7 28 605-632 76-103 (140)
51 3es6_B Prolactin-inducible pro 22.0 4E+02 0.014 23.3 9.5 71 29-137 17-87 (118)
52 4fxk_B Complement C4-A alpha c 21.0 3.3E+02 0.011 31.3 10.3 81 189-303 158-238 (767)
53 4acq_A Alpha-2-macroglobulin; 20.7 6.2E+02 0.021 31.7 13.2 80 190-303 774-853 (1451)
No 1
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.05 E-value=0.16 Score=50.29 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=111.4
Q ss_pred cccccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCc
Q 005768 21 MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSS 100 (678)
Q Consensus 21 ~~~~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (678)
+...-++..+.+|++....+.++|.=+-||.++.++| +. .
T Consensus 6 ~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-----p~--~--------------------------------- 45 (220)
T 2qsv_A 6 SNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-----PS--F--------------------------------- 45 (220)
T ss_dssp SCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-----CT--T---------------------------------
T ss_pred ecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-----CC--c---------------------------------
Confidence 3556778888999999999999999999999998765 11 0
Q ss_pred eeeeeeeEEEcCCceEEEEEEEEeCce---EEEEEEEEEEEEc----eeeeeEEeeeecccccccccccccccCCCCCce
Q 005768 101 FTLSEVDISLGGAETILVQLMVTPKVE---GILKIVGVRWRLS----GSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL 173 (678)
Q Consensus 101 f~~~~~~i~L~p~Etk~V~L~v~P~~~---G~L~I~Gv~~~L~----~~v~g~~~fe~kg~RL~~tk~r~~~~y~pD~rL 173 (678)
+.+....-.|+|+++-.|.++.-++.- |..+=. +..... +... ...+.+.
T Consensus 46 ~~~~~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~-i~v~~~~~~~~~~~-~~~i~v~--------------------- 102 (220)
T 2qsv_A 46 VSLDDRAFRLQAREPRELNLSLAVPRNMPPGMKDEP-LVLEVTSPETGKKA-VDSVMVS--------------------- 102 (220)
T ss_dssp EECSCCEEEECSSSCEEEEEEECCCTTCCSEEEEEE-EEEEEECTTTCCEE-EEEEEEE---------------------
T ss_pred eEeeeCcceeCCCCceEEEEEEcchhcccCCceeeE-EEEEEEcCCCCccc-ccEEEEE---------------------
Confidence 011124678899999999988887764 432210 111111 1110 1122221
Q ss_pred EEEEEc--------CCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhh
Q 005768 174 KFIVIK--------SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 245 (678)
Q Consensus 174 ~~~Vi~--------~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~ 245 (678)
..+.+ .+|.+++. ..+...-+.|+.....++|+|.|..||.=-.+.++.. ++
T Consensus 103 -g~v~p~~~~~~~~~~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~scg-ct----------------- 162 (220)
T 2qsv_A 103 -LPLVDNFPALTAAQTGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRNP-AL----------------- 162 (220)
T ss_dssp -EEECCCGGGCCGGGCCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECST-TE-----------------
T ss_pred -EEEcccchhhhhccCCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCCC-CE-----------------
Confidence 22222 35555554 3333322228999999999999999987555544332 11
Q ss_pred ccccccccccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCC-Ce----EEEEEEEEee
Q 005768 246 KMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVP-GK----ISLSITIYYE 304 (678)
Q Consensus 246 ~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~-G~----~~l~~LfyYe 304 (678)
...++ ...|+||++.++.+.+.+... |. ..-.+.+|--
T Consensus 163 --------------------~~~~~-~~~i~PGe~~~i~v~~~~~~~~g~~~~~~~~~i~v~~N 205 (220)
T 2qsv_A 163 --------------------TAVPD-RTEIKPGGSTLLRIAVDPQVMKAEGWQSIAADISIICN 205 (220)
T ss_dssp --------------------EEEES-CSEECTTCEEEEEEEECHHHHHHTTCSEEEEEEEEEES
T ss_pred --------------------eeecC-CccCCCCCEEEEEEEEecCCCCCcccceeccEEEEEEC
Confidence 11122 347899999999999998633 77 6666666553
No 2
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=94.83 E-value=2.4 Score=48.88 Aligned_cols=133 Identities=12% Similarity=0.067 Sum_probs=86.9
Q ss_pred eeeeEEEcCCceEEEEEEEEeCc-------eEEEEEEEEEEEEceeeeeEEeeeecccccccccccccccCCCCCceEEE
Q 005768 104 SEVDISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFI 176 (678)
Q Consensus 104 ~~~~i~L~p~Etk~V~L~v~P~~-------~G~L~I~Gv~~~L~~~v~g~~~fe~kg~RL~~tk~r~~~~y~pD~rL~~~ 176 (678)
...+++|+|.|++.+.+.+.+.. .+.|+|..+ .++.. ..+.|.- -.
T Consensus 536 ~~~~v~L~p~~~~~i~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~e---t~~~~~~-----------------------~d 588 (692)
T 1vjj_A 536 DSATMSLDPEEEAEHPIKISYAQYERYLKSDNMIRITAV-CKVPD---ESEVVVE-----------------------RD 588 (692)
T ss_dssp EEEEEEECTTCEEEEEEEECHHHHHTTCCTTCEEEEEEE-EECTT---SCCEEEE-----------------------EE
T ss_pred eeEEEEECCCceEEEEEEECHHHHhhhcccCCeEEEEEE-EEECC---CceEEEE-----------------------EE
Confidence 34799999999999999998753 356666532 11111 0001111 11
Q ss_pred EEcCCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccC
Q 005768 177 VIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAG 256 (678)
Q Consensus 177 Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~ 256 (678)
+.=..|-|.+.+ +.....|+-..+.++|+|.=..||++. .|+++... |..
T Consensus 589 i~l~~P~l~I~v---~g~~~v~~~l~v~v~f~NPL~~~L~~c--------~~~vEG~G---------L~~---------- 638 (692)
T 1vjj_A 589 IILDNPTLTLEV---LNEARVRKPVNVQMLFSNPLDEPVRDC--------VLMVEGSG---------LLL---------- 638 (692)
T ss_dssp EECBCCCEEEEE---CSCCBTTSCEEEEEEEECCSSSCBCSE--------EEEEECTT---------TSS----------
T ss_pred EEEcCCCEEEEe---CCCcccCCeEEEEEEEECCCCCcccce--------EEEEECCC---------CCC----------
Confidence 122345566665 445567999999999999999999997 55554421 100
Q ss_pred CCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEE
Q 005768 257 GNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIY 302 (678)
Q Consensus 257 ~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lfy 302 (678)
.+..+.+ ..|+||++.++.+.+.....|.+.|---|.
T Consensus 639 ------~~~~~~~---~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~ 675 (692)
T 1vjj_A 639 ------GNLKIDV---PTLGPKERSRVRFDILPSRSGTKQLLADFS 675 (692)
T ss_dssp ------SCEEEEE---CCBCTTCEEEEEEEECCCSCEEEEEEEEEE
T ss_pred ------CceEEEc---CccCCCCEEEEEEEEEeccccceEEEEEEE
Confidence 1123444 379999999999999998999988655543
No 3
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=94.26 E-value=2.8 Score=48.35 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=86.4
Q ss_pred eeeeEEEcCCceEEEEEEEEeCc-------eEEEEEEEEEEEEce---eeeeEEeeeecccccccccccccccCCCCCce
Q 005768 104 SEVDISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSG---SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL 173 (678)
Q Consensus 104 ~~~~i~L~p~Etk~V~L~v~P~~-------~G~L~I~Gv~~~L~~---~v~g~~~fe~kg~RL~~tk~r~~~~y~pD~rL 173 (678)
...+++|.|.+++.+.+.|.+.. .+.|+|..+ .++.. .+....+|.
T Consensus 528 ~~~~~~l~p~~~~~v~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~et~~~~~~~~di~----------------------- 583 (687)
T 2q3z_A 528 YLLNLTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRAL-LVEPVINSYLLAERDLY----------------------- 583 (687)
T ss_dssp EEEEEEECTTEEEEEEEEECHHHHTTTCCTTCEEEEEEE-EEETTTTEEEEEEEEEE-----------------------
T ss_pred eeeEEEECCCceEEEEEEECHHHHhhhccCCCEEEEEEE-EEECCCCeEEEEEEEEE-----------------------
Confidence 34689999999999999998753 356776533 22221 111122221
Q ss_pred EEEEEcCCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhcccccccc
Q 005768 174 KFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQS 253 (678)
Q Consensus 174 ~~~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~ 253 (678)
=..|-|.+.+. .....|+-..+.++|+|.=..||++. .|+++... |.
T Consensus 584 -----l~~P~l~I~v~---g~~~v~~~~~v~v~f~NPL~~~L~~c--------~~~vEG~G---------L~-------- 630 (687)
T 2q3z_A 584 -----LENPEIKIRIL---GEPKQKRKLVAEVSLQNPLPVALEGC--------TFTVEGAG---------LT-------- 630 (687)
T ss_dssp -----CBCCCCEEEEE---SCCSSSSCEEEEEEEECCSSSCBCSE--------EEEEECTT---------TC--------
T ss_pred -----EeCCCEEEEeC---CCcccCCeEEEEEEEECCCCCcccce--------EEEEECCC---------CC--------
Confidence 12344555543 34456999999999999999999997 55555421 10
Q ss_pred ccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEE
Q 005768 254 VAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIY 302 (678)
Q Consensus 254 ~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lfy 302 (678)
..+..+.++ ..|+||++.++.+.+.....|.+.|---|-
T Consensus 631 --------~~~~~~~~~--~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~ 669 (687)
T 2q3z_A 631 --------EEQKTVEIP--DPVEAGEEVKVRMDLVPLHMGLHKLVVNFE 669 (687)
T ss_dssp --------SSCEEEEEC--SCBCTTCEEEEEEEECCCSSSCEEEEEEEE
T ss_pred --------CCceEEecC--CCcCCCCEEEEEEEEEeccccceEEEEEEE
Confidence 011234442 369999999999999998999988655443
No 4
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=94.07 E-value=0.23 Score=45.31 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=66.7
Q ss_pred EEEEcCCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccc
Q 005768 175 FIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSV 254 (678)
Q Consensus 175 ~~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~ 254 (678)
+.+..++|-|.+.+. .|..+..|+...+.++++|.|..++.+..+.+- .++ .. ..
T Consensus 10 ~~~~~~~pDL~V~is-~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~ly------vng-~~----------------v~- 64 (127)
T 3idu_A 10 LATTFEFPDLTVEIK-GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVY------ING-TL----------------YK- 64 (127)
T ss_dssp C--CCSSCCEEEEEE-SCSEECTTCCEEEEEEEEECSSSCEEEEEEEEE------ETT-EE----------------EE-
T ss_pred EeeeccCCCeEEEec-CCCcccCCCEEEEEEEEEECCCCccCCcEEEEE------ECC-EE----------------Ee-
Confidence 344589999999664 799999999999999999999999998866531 111 00 00
Q ss_pred cCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEeee
Q 005768 255 AGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM 305 (678)
Q Consensus 255 ~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~ 305 (678)
.. ...|++|++.++.+-......|.+.|...+-...
T Consensus 65 ---------t~------~v~La~G~s~tv~f~~~~~~~G~~~v~AvVD~~n 100 (127)
T 3idu_A 65 ---------NW------TVSLGPKEEKVLTFNWTPTQEGMYRINATVDEEN 100 (127)
T ss_dssp ---------EE------EEEECTTCEEEEEEEECCSSCEEEEEEEEESTTC
T ss_pred ---------eE------EeccCCCCeEEEEEEEEcCCCcEEEEEEEEcCCC
Confidence 01 1258999999999988754889998888875544
No 5
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=93.90 E-value=0.08 Score=46.53 Aligned_cols=73 Identities=23% Similarity=0.363 Sum_probs=48.8
Q ss_pred ccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceee
Q 005768 24 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL 103 (678)
Q Consensus 24 ~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 103 (678)
.+-...+++|+++.++|.|+|||.++|. |..|..+ .. ... .. .
T Consensus 10 I~v~g~~~v~~~l~v~vsf~NPL~~~L~--~c~~~vE--G~--GL~-----------~~--------------------~ 52 (102)
T 2xzz_A 10 LTLLGAAVVGQECEVQIVFKNPLPVTLT--NVVFRLE--GS--GLQ-----------RP--------------------K 52 (102)
T ss_dssp EEESSCCCSSSCEEEEEEEECCSSSCBC--SEEEEEE--ET--TTE-----------EE--------------------E
T ss_pred EEECCCcccCCeEEEEEEEECCCCCccc--CEEEEEE--CC--CCC-----------cc--------------------e
Confidence 3344556899999999999999988765 4444322 11 000 00 0
Q ss_pred eeeeEEEcCCceEEEEEEEEeCceEEEEEE
Q 005768 104 SEVDISLGGAETILVQLMVTPKVEGILKIV 133 (678)
Q Consensus 104 ~~~~i~L~p~Etk~V~L~v~P~~~G~L~I~ 133 (678)
...-=.++|+++-.+++.++|.+.|.=++.
T Consensus 53 ~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~ 82 (102)
T 2xzz_A 53 ILNVGDIGGNETVTLRQSFVPVRPGPRQLI 82 (102)
T ss_dssp EEEECCBCTTCEEEEEEEECCCSCSSCCCE
T ss_pred EEEcCcCCCCCEEEEEEEEecCcccceEEE
Confidence 011123899999999999999999976553
No 6
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=93.59 E-value=5 Score=46.15 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=86.0
Q ss_pred eeeEEEcCCceEEEEEEEEeCc-------eEEEEEEEEEEEEce---eeeeEEeeeecccccccccccccccCCCCCceE
Q 005768 105 EVDISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSG---SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLK 174 (678)
Q Consensus 105 ~~~i~L~p~Etk~V~L~v~P~~-------~G~L~I~Gv~~~L~~---~v~g~~~fe~kg~RL~~tk~r~~~~y~pD~rL~ 174 (678)
..+++|.|.+++.+.+.+.+.. .+.|+|..+ -++.. .+....+|.+
T Consensus 527 ~~~~~L~p~~~~~v~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~et~~~~~~~~di~l----------------------- 582 (695)
T 1g0d_A 527 TISVTVPAHKAHKEVMRLHYDDYVRCVSEHHLIRVKAL-LDAPGENGPIMTVANIPL----------------------- 582 (695)
T ss_dssp EEEEEECTTEEEEEEEEECHHHHTTTCCTTCEEEEEEE-EECCC---EEEEEEEEEC-----------------------
T ss_pred eEEEEECCCceEEEEEEECHHHHhhhcccCCeEEEEEE-EEECCCCeEEEEEEEEEE-----------------------
Confidence 4699999999999999998753 466776532 22211 1111222221
Q ss_pred EEEEcCCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccc
Q 005768 175 FIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSV 254 (678)
Q Consensus 175 ~~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~ 254 (678)
..|-|.+.+ +.....|+-..+.++|+|.=..||++. .|+++... |.+
T Consensus 583 -----~~P~l~I~v---~g~~~v~~~l~a~vsf~NPL~~~L~~c--------~~~vEG~G---------L~~-------- 629 (695)
T 1g0d_A 583 -----STPELLVQV---PGKAVVWEPLTAYVSFTNPLPVPLKGG--------VFTLEGAG---------LLS-------- 629 (695)
T ss_dssp -----BCCCCEEEC---CSCEETTCCEEEEEEEECCSSSCEESC--------EEEEEETT---------TEE--------
T ss_pred -----cCCCEEEEe---CCCcccCCeEEEEEEEECCCCCcccce--------EEEEECCC---------CCc--------
Confidence 233344443 556677999999999999999999998 55554321 100
Q ss_pred cCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEe
Q 005768 255 AGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 303 (678)
Q Consensus 255 ~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 303 (678)
...+.++ ..|+||++.++.+.+.....|.+.|---|.-
T Consensus 630 ---------~~~~~~~--~~v~Pg~~~~~~~~~~P~~~G~r~L~a~f~s 667 (695)
T 1g0d_A 630 ---------ATQIHVN--GAVAPSGKVSVKLSFSPMRTGVRKLLVDFDS 667 (695)
T ss_dssp ---------EEEEECS--SEECTTCEEEEEEEECCSSCEEEEEEEEEEC
T ss_pred ---------ceEEecC--CCcCCCCEEEEEEEEEcCCccceEEEEEEEC
Confidence 0123331 3699999999999999999999886555543
No 7
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=92.72 E-value=4.3 Score=47.03 Aligned_cols=131 Identities=12% Similarity=0.177 Sum_probs=85.7
Q ss_pred eeeeEEEcCCceEEEEEEEEeCc-------eEEEEEEEEEEEEce---eeeeEEeeeecccccccccccccccCCCCCce
Q 005768 104 SEVDISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSG---SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL 173 (678)
Q Consensus 104 ~~~~i~L~p~Etk~V~L~v~P~~-------~G~L~I~Gv~~~L~~---~v~g~~~fe~kg~RL~~tk~r~~~~y~pD~rL 173 (678)
...+++|+|.|++.+.+.+.+.. ...|+|..+ .++.. .+....+|.
T Consensus 571 ~~~~~~L~p~~~~~i~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~et~~~~~~~~di~----------------------- 626 (731)
T 1ex0_A 571 ETFDVTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVT-ARINETRDVLAKQKSTV----------------------- 626 (731)
T ss_dssp EEEEEEECTTEEEEEEEEECHHHHTTTCCTTCEEEEEEE-EEETTTCCEEEEEEEEE-----------------------
T ss_pred eeEEEEECCCceEEEEEEECHHHHhhhccCCCEEEEEEE-EEECCCCeEEEEEEEEE-----------------------
Confidence 34699999999999999998753 356666533 12211 111122221
Q ss_pred EEEEEcCCCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhcccccccc
Q 005768 174 KFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQS 253 (678)
Q Consensus 174 ~~~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~ 253 (678)
=..|-|.+.+. .....|+-..+.|+|+|.=..||++. .|+++... |.+
T Consensus 627 -----l~~P~l~I~v~---g~~~v~~~l~v~vsf~NPL~~~L~~c--------~~~vEG~G---------L~~------- 674 (731)
T 1ex0_A 627 -----LTIPEIIIKVR---GTQVVGSDMTVTVQFTNPLKETLRNV--------WVHLDGPG---------VTR------- 674 (731)
T ss_dssp -----CBCCCCEEEEE---ECCBTTSCEEEEEEEECCSSSCEEEE--------EEEEEETT---------TEE-------
T ss_pred -----EeCCCEEEEeC---CCcccCCeEEEEEEEECCCCCcccce--------EEEEECCC---------CCc-------
Confidence 12344445543 34467999999999999999999997 45554321 100
Q ss_pred ccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEe
Q 005768 254 VAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 303 (678)
Q Consensus 254 ~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 303 (678)
...+.+ ..|+||++.++.+.+.....|.+.|---|.-
T Consensus 675 ----------~~~~~~---~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~s 711 (731)
T 1ex0_A 675 ----------PMKKMF---REIRPNSTVQWEEVCRPWVSGHRKLIASMSS 711 (731)
T ss_dssp ----------EEEEEE---EEECTTCEEEEEEEECCSSCEEEEEEEEEEC
T ss_pred ----------eeeEec---CccCCCCEEEEEEEEEeccccceEEEEEEEC
Confidence 012333 3789999999999999999999886555543
No 8
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=91.83 E-value=0.6 Score=53.67 Aligned_cols=91 Identities=18% Similarity=0.312 Sum_probs=59.6
Q ss_pred ccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceee
Q 005768 24 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL 103 (678)
Q Consensus 24 ~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 103 (678)
.+-...+++|+++.++|.|+|||.+||.=--+++. .. ... . .
T Consensus 589 I~v~g~~~v~~~l~a~vsf~NPL~~~L~~c~~~vE----G~--GL~-----------~--------------------~- 630 (695)
T 1g0d_A 589 VQVPGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLE----GA--GLL-----------S--------------------A- 630 (695)
T ss_dssp EECCSCEETTCCEEEEEEEECCSSSCEESCEEEEE----ET--TTE-----------E--------------------E-
T ss_pred EEeCCCcccCCeEEEEEEEECCCCCcccceEEEEE----CC--CCC-----------c--------------------c-
Confidence 34455678999999999999999998763333332 11 000 0 0
Q ss_pred eeeeE--EEcCCceEEEEEEEEeCceEEEEEE-EEEEEEceeeeeEEeeeec
Q 005768 104 SEVDI--SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFESN 152 (678)
Q Consensus 104 ~~~~i--~L~p~Etk~V~L~v~P~~~G~L~I~-Gv~~~L~~~v~g~~~fe~k 152 (678)
....+ .++|+++-.+++.++|.+.|.=++. .+..+-...|.|...+.+.
T Consensus 631 ~~~~~~~~v~Pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V~ 682 (695)
T 1g0d_A 631 TQIHVNGAVAPSGKVSVKLSFSPMRTGVRKLLVDFDSDRLKDVKGVTTVVVH 682 (695)
T ss_dssp EEEECSSEECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEEE
T ss_pred eEEecCCCcCCCCEEEEEEEEEcCCccceEEEEEEECCcccCcEeEEEEEEe
Confidence 01334 6899999999999999999987763 2222222356777666653
No 9
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=90.71 E-value=1.1 Score=51.82 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=58.6
Q ss_pred ccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceee
Q 005768 24 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL 103 (678)
Q Consensus 24 ~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 103 (678)
.+-...+++|+++.|+|.|+|||.++|. |..| +.+.-... .. .
T Consensus 634 I~v~g~~~v~~~l~v~vsf~NPL~~~L~--~c~~----~vEG~GL~-----------~~--------------------~ 676 (731)
T 1ex0_A 634 IKVRGTQVVGSDMTVTVQFTNPLKETLR--NVWV----HLDGPGVT-----------RP--------------------M 676 (731)
T ss_dssp EEEEECCBTTSCEEEEEEEECCSSSCEE--EEEE----EEEETTTE-----------EE--------------------E
T ss_pred EEeCCCcccCCeEEEEEEEECCCCCccc--ceEE----EEECCCCC-----------ce--------------------e
Confidence 3344556899999999999999999876 3332 22211110 00 0
Q ss_pred eeeeEEEcCCceEEEEEEEEeCceEEEEEE-EEEEEEceeeeeEEeeeec
Q 005768 104 SEVDISLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFESN 152 (678)
Q Consensus 104 ~~~~i~L~p~Etk~V~L~v~P~~~G~L~I~-Gv~~~L~~~v~g~~~fe~k 152 (678)
...-=.++|+++-.+++.++|.+.|.=+|. .+..+-...|.|...+.+.
T Consensus 677 ~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V~ 726 (731)
T 1ex0_A 677 KKMFREIRPNSTVQWEEVCRPWVSGHRKLIASMSSDSLRHVYGELDVQIQ 726 (731)
T ss_dssp EEEEEEECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEEB
T ss_pred eEecCccCCCCEEEEEEEEEeccccceEEEEEEECCcccCcEeEEEEEEc
Confidence 012235999999999999999999987763 2222222346666666553
No 10
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=89.65 E-value=0.46 Score=54.68 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=56.5
Q ss_pred cccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 005768 25 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 104 (678)
Q Consensus 25 ~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 104 (678)
+-...+++|+++.|+|.|+|||.++|. |..| +.+.-... .+ ..
T Consensus 592 ~v~g~~~v~~~~~v~v~f~NPL~~~L~--~c~~----~vEG~GL~-----------------~~-------------~~- 634 (687)
T 2q3z_A 592 RILGEPKQKRKLVAEVSLQNPLPVALE--GCTF----TVEGAGLT-----------------EE-------------QK- 634 (687)
T ss_dssp EEESCCSSSSCEEEEEEEECCSSSCBC--SEEE----EEECTTTC-----------------SS-------------CE-
T ss_pred EeCCCcccCCeEEEEEEEECCCCCccc--ceEE----EEECCCCC-----------------CC-------------ce-
Confidence 344556789999999999999998875 4333 32211110 00 00
Q ss_pred eeeE--EEcCCceEEEEEEEEeCceEEEEEE-EEEEEEceeeeeEEeeee
Q 005768 105 EVDI--SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFES 151 (678)
Q Consensus 105 ~~~i--~L~p~Etk~V~L~v~P~~~G~L~I~-Gv~~~L~~~v~g~~~fe~ 151 (678)
...+ .++|+++-.+.+.++|.+.|.=+|. .+..+-...|.|...+.+
T Consensus 635 ~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~s~~l~~v~G~~~v~V 684 (687)
T 2q3z_A 635 TVEIPDPVEAGEEVKVRMDLVPLHMGLHKLVVNFESDKLKAVKGFRNVII 684 (687)
T ss_dssp EEEECSCBCTTCEEEEEEEECCCSSSCEEEEEEEECSSSCCEEEEEEEC-
T ss_pred EEecCCCcCCCCEEEEEEEEEeccccceEEEEEEEcCcccCcEeEEEEEE
Confidence 1234 5899999999999999999987763 222222234666655543
No 11
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=88.11 E-value=1.1 Score=51.66 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=56.8
Q ss_pred ccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceee
Q 005768 24 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL 103 (678)
Q Consensus 24 ~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 103 (678)
.+-...+++|+++.|+|.|+|||.++|. |..|. -+.-.... .+ .
T Consensus 598 I~v~g~~~v~~~l~v~v~f~NPL~~~L~--~c~~~----vEG~GL~~----------------~~--------------~ 641 (692)
T 1vjj_A 598 LEVLNEARVRKPVNVQMLFSNPLDEPVR--DCVLM----VEGSGLLL----------------GN--------------L 641 (692)
T ss_dssp EEECSCCBTTSCEEEEEEEECCSSSCBC--SEEEE----EECTTTSS----------------SC--------------E
T ss_pred EEeCCCcccCCeEEEEEEEECCCCCccc--ceEEE----EECCCCCC----------------Cc--------------e
Confidence 3445566899999999999999998865 43333 22111100 00 0
Q ss_pred eeeeEEEcCCceEEEEEEEEeCceEEEEEE-EEEEEEceeeeeEEeeee
Q 005768 104 SEVDISLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFES 151 (678)
Q Consensus 104 ~~~~i~L~p~Etk~V~L~v~P~~~G~L~I~-Gv~~~L~~~v~g~~~fe~ 151 (678)
...-=.++|+++-.+++.++|.+.|.=++. .+..+-...|.|...+.+
T Consensus 642 ~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V 690 (692)
T 1vjj_A 642 KIDVPTLGPKERSRVRFDILPSRSGTKQLLADFSCNKFPAIKAMLSIDV 690 (692)
T ss_dssp EEEECCBCTTCEEEEEEEECCCSCEEEEEEEEEECSSSTTEEEEEEEEE
T ss_pred EEEcCccCCCCEEEEEEEEEeccccceEEEEEEECCcccCceeEEEEEE
Confidence 012224899999999999999999987763 222222234556555543
No 12
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=86.88 E-value=6.1 Score=35.52 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=54.4
Q ss_pred cCceEEEEEEEeCCccCcEEee-------eEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 005768 32 AGEPVKVDIEFKNPLQIPISIS-------NISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 104 (678)
Q Consensus 32 vgEpi~V~V~L~NPL~ipL~Ls-------~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 104 (678)
.|+.+.+.++++|+=.-++.|+ ++.|. +.++..- =.=+++.-|+..
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~----d~~G~~V-----------------------wrwS~~~~FtQa 68 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVY----DSEHKER-----------------------YRYSKEKMFTQA 68 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEE----CTTCCEE-----------------------EETTTTCCCCCC
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEE----CCCCCEE-----------------------EEccccchhhhh
Confidence 7899999999999999888876 33332 1111100 011234557777
Q ss_pred eeeEEEcCCceEEEEEEEE-eCceEEEEEEEE
Q 005768 105 EVDISLGGAETILVQLMVT-PKVEGILKIVGV 135 (678)
Q Consensus 105 ~~~i~L~p~Etk~V~L~v~-P~~~G~L~I~Gv 135 (678)
....+|.|+|++......- +-.+|...+.+.
T Consensus 69 ~~~~tl~pGE~~~f~~~w~~~~~pG~Ytl~a~ 100 (120)
T 3isy_A 69 FQNLTLESGETYDFSDVWKEVPEPGTYEVKVT 100 (120)
T ss_dssp CEEEEECTTCEEEEEEEESSCCCSEEEEEEEE
T ss_pred hceEEECCCCEEEEEEEeCCCCCCccEEEEEE
Confidence 7999999999999999998 456888877653
No 13
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=86.75 E-value=5.7 Score=35.37 Aligned_cols=85 Identities=11% Similarity=0.164 Sum_probs=59.3
Q ss_pred CCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 005768 181 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 260 (678)
Q Consensus 181 ~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 260 (678)
+|-|.+... -|.....|+...+.++++|.|........+.+ ..++ .. +.
T Consensus 2 ~PDL~vt~i-tP~~~~~~~~~ti~atVkN~G~~~a~~~~V~l------y~~g-~~----------------v~------- 50 (114)
T 2l0d_A 2 IPDLVPVSL-TPVTVVPNTVNTMTATIENQGNKDSTSFNVSL------LVDG-IV----------------VD------- 50 (114)
T ss_dssp CCCEEEEEE-ECSEECTTSEEEEEEEEEECSSSCBCCEEEEE------EETT-EE----------------EE-------
T ss_pred CCCcEEEec-cCCCcCCCCeEEEEEEEEECCCCCCCCEEEEE------EECC-EE----------------Ec-------
Confidence 477777655 48889999999999999999988777764441 1111 00 00
Q ss_pred CCCcceeecCCCcccCCCCeEEEEEEEEeC-CCCeEEEEEEEEee
Q 005768 261 KMPQAVFSFPEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYE 304 (678)
Q Consensus 261 ~~~~~v~~lp~~~~L~pGes~~~plwlrap-~~G~~~l~~LfyYe 304 (678)
.-. -..|++|++.++.+-..+. ..|.+.|...+-..
T Consensus 51 -----t~~---v~~LaaG~s~tv~~~w~~~~~~G~ytl~a~VD~~ 87 (114)
T 2l0d_A 51 -----TQT---VTSLESENSTNVDFHWTLDGTANSYTLTVNVDPE 87 (114)
T ss_dssp -----EEE---ESCBCBTCEEEEEEEEECCCSCSEEEEEEEECTT
T ss_pred -----cee---cccccCCCEEEEEEEEeecCcCceEEEEEEECCC
Confidence 001 1268999999999877665 58999998877443
No 14
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=86.51 E-value=2.4 Score=37.49 Aligned_cols=65 Identities=12% Similarity=-0.027 Sum_probs=49.7
Q ss_pred EEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCCCeE
Q 005768 202 HLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPL 281 (678)
Q Consensus 202 ~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~ 281 (678)
...+.|+|.+..++.. +|+++.|+.|++.- .-+.|+||++.
T Consensus 18 ~~~l~L~N~t~~~vaF-KVKtT~p~~y~VrP--------------------------------------~~G~I~P~~~~ 58 (109)
T 1row_A 18 SSTHKLVNGGAEKIVF-KIKSSNNNEYRIAP--------------------------------------VFGFVDPSGSK 58 (109)
T ss_dssp EEEEEEEECSSSCEEE-EEEESCSSSEEEEC--------------------------------------SEEEECTTEEE
T ss_pred eEEEEEEcCCCCeEEE-EEEeCCCCceEEcC--------------------------------------CceEECCCCeE
Confidence 5899999999988865 78998887766532 23588999999
Q ss_pred EEEEEEEeCCCCeEEEEEEEEeeeCC
Q 005768 282 LWPLWYRAAVPGKISLSITIYYEMGD 307 (678)
Q Consensus 282 ~~plwlrap~~G~~~l~~LfyYe~~~ 307 (678)
++.+|+++.... .=+|+++|....
T Consensus 59 ~i~I~~q~~~~~--~dKflvq~~~~~ 82 (109)
T 1row_A 59 DVVITRTAGAPK--EDKLVVHFASAP 82 (109)
T ss_dssp EEEEEECSCCCE--EEEEEEEEEECC
T ss_pred EEEEEeCCCCCC--CCEEEEEEEECC
Confidence 999999985333 447888886653
No 15
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=84.76 E-value=2.7 Score=37.62 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=49.3
Q ss_pred EEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCCCeE
Q 005768 202 HLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPL 281 (678)
Q Consensus 202 ~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~ 281 (678)
...+.|+|.+..++.. +|+|+.|+.|++.- .-+.|+||++.
T Consensus 26 ~~~l~L~N~t~~~vAF-KVKtT~p~~YrVrP--------------------------------------~~G~I~Pg~~~ 66 (116)
T 1m1s_A 26 NSTHNITSESDSRLAF-KVKSSNNEHYRVRP--------------------------------------VYGFVDAKGKS 66 (116)
T ss_dssp EEEEEEEECSSSEEEE-EEEESCTTTEEEEC--------------------------------------SEEEECTTCEE
T ss_pred EEEEEEECCCCCeEEE-EEEecCCCceEEcC--------------------------------------CceEECCCCeE
Confidence 7899999999988865 78888886666532 13588999999
Q ss_pred EEEEEEEeCCCCeEEEEEEEEeeeCC
Q 005768 282 LWPLWYRAAVPGKISLSITIYYEMGD 307 (678)
Q Consensus 282 ~~plwlrap~~G~~~l~~LfyYe~~~ 307 (678)
.+.+|.++..+. .=+|+++|....
T Consensus 67 ~I~I~~q~~~~k--~DKflVq~~~~~ 90 (116)
T 1m1s_A 67 KLDINRLPGPPK--EDKIVIQYAEVP 90 (116)
T ss_dssp EEEEEECSCCSC--EEEEEEEEEEEC
T ss_pred EEEEEeCCCCCC--CCEEEEEEEECC
Confidence 999999974333 337888886543
No 16
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.47 E-value=1.3 Score=39.38 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=54.5
Q ss_pred cccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeec-CCC
Q 005768 194 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF-PEG 272 (678)
Q Consensus 194 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~l-p~~ 272 (678)
.+..|+....++.|+|.|..|++.= +... ..|.+ |..
T Consensus 36 ~~~v~~~~~~~~~l~N~g~~~~~f~-~~~~-----------------------------------------~~F~i~P~~ 73 (122)
T 2ys4_A 36 TCPVKYSTQKILLVRNIGNKNAVFH-IKTC-----------------------------------------RPFSIEPAI 73 (122)
T ss_dssp SEESSSCEEEEEEEECCSSSCEEEE-EECC-----------------------------------------TTEEEESSE
T ss_pred CeecCCeEEEEEEEEECCCCCEEEE-EecC-----------------------------------------CCeEEECCc
Confidence 4788999999999999999887641 1111 12322 445
Q ss_pred cccCCCCeEEEEEEEEeCCCCeEEEEEEEEeeeC
Q 005768 273 ISIQGETPLLWPLWYRAAVPGKISLSITIYYEMG 306 (678)
Q Consensus 273 ~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~ 306 (678)
..|+||++.++.+.+++...|.++-.+.+.|...
T Consensus 74 g~L~pg~~~~i~V~F~P~~~g~~~~~l~v~~~~g 107 (122)
T 2ys4_A 74 GTLNVGESMQLEVEFEPQSVGDHSGRLIVCYDTG 107 (122)
T ss_dssp EEECTTCEEEEEEEECCSSSBCCCCBCEEEESSS
T ss_pred CEECCCCEEEEEEEEEcCCCccEEEEEEEEECCC
Confidence 7999999999999999999999888888888443
No 17
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.89 E-value=1.1 Score=38.90 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=52.3
Q ss_pred ccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcc
Q 005768 195 AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 274 (678)
Q Consensus 195 ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~ 274 (678)
+..|+.....++|+|.|..|+..= +..... +.+. ...+. |....
T Consensus 22 v~~g~~~~~~~~l~N~g~~p~~~~-----------~~~~~~-----~~~~-------------------~f~v~-p~~g~ 65 (112)
T 2e6j_A 22 VFTGSAHCYEAILYNKGSIDALFN-----------MTPPTS-----ALGA-------------------CFVFS-PKEGI 65 (112)
T ss_dssp EESSCCEEEEEEEEECCSSCEEEE-----------ECCCSS-----HHHH-------------------HCEEE-SSEEE
T ss_pred EEECCEEEEEEEEEECCcceEEEE-----------EecCCc-----cccC-------------------cEEEE-CCcCE
Confidence 678999999999999999987652 111100 0000 00111 34569
Q ss_pred cCCCCeEEEEEEEEeCCCCeEEEEEEEEeeeC
Q 005768 275 IQGETPLLWPLWYRAAVPGKISLSITIYYEMG 306 (678)
Q Consensus 275 L~pGes~~~plwlrap~~G~~~l~~LfyYe~~ 306 (678)
|+||++..+.+.+.+...|...-.+.++-...
T Consensus 66 i~pg~~~~i~V~f~~~~~g~f~~~i~v~~~g~ 97 (112)
T 2e6j_A 66 IEPSGVQAIQISFSSIILGNFEEEFLVNVNGS 97 (112)
T ss_dssp ECTTBCCEEEEEECCCCCEEEEEEECEEESSC
T ss_pred ECCCCEEEEEEEEECCCcceEEEEEEEEECCC
Confidence 99999999999999988898887777766543
No 18
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.25 E-value=2.6 Score=36.49 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=61.8
Q ss_pred cccccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCc
Q 005768 21 MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSS 100 (678)
Q Consensus 21 ~~~~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (678)
+...-+...+..|++....++|+|.=++|+.++-+ ...... ...
T Consensus 13 ~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~-------~~~~~~-----------------------------~~~ 56 (112)
T 2e6j_A 13 NFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMT-------PPTSAL-----------------------------GAC 56 (112)
T ss_dssp SCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEEC-------CCSSHH-----------------------------HHH
T ss_pred CcccEecEeEEECCEEEEEEEEEECCcceEEEEEe-------cCCccc-----------------------------cCc
Confidence 45567888899999999999999999988877542 110000 011
Q ss_pred eeeeeeeEEEcCCceEEEEEEEEeCceEEEEEEEEEEEEce
Q 005768 101 FTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG 141 (678)
Q Consensus 101 f~~~~~~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L~~ 141 (678)
|.++...=.|.|+++..|.+...|+..|.+.-. +.+.+.+
T Consensus 57 f~v~p~~g~i~pg~~~~i~V~f~~~~~g~f~~~-i~v~~~g 96 (112)
T 2e6j_A 57 FVFSPKEGIIEPSGVQAIQISFSSIILGNFEEE-FLVNVNG 96 (112)
T ss_dssp CEEESSEEEECTTBCCEEEEEECCCCCEEEEEE-ECEEESS
T ss_pred EEEECCcCEECCCCEEEEEEEEECCCcceEEEE-EEEEECC
Confidence 334446789999999999999999999988755 6666665
No 19
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.73 E-value=7.6 Score=34.33 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=52.6
Q ss_pred ccccceeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceee
Q 005768 24 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL 103 (678)
Q Consensus 24 ~~~~~~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 103 (678)
.-+...|.+|+.-+..+.++|-=+.+..+ .|+ .. ..|.+
T Consensus 31 ~l~fg~~~v~~~~~~~~~l~N~g~~~~~f-----~~~--~~----------------------------------~~F~i 69 (122)
T 2ys4_A 31 KLNFSTCPVKYSTQKILLVRNIGNKNAVF-----HIK--TC----------------------------------RPFSI 69 (122)
T ss_dssp EECCCSEESSSCEEEEEEEECCSSSCEEE-----EEE--CC----------------------------------TTEEE
T ss_pred eeecCCeecCCeEEEEEEEEECCCCCEEE-----EEe--cC----------------------------------CCeEE
Confidence 46889999999999999999987777664 233 11 23666
Q ss_pred eeeeEEEcCCceEEEEEEEEeCceEE
Q 005768 104 SEVDISLGGAETILVQLMVTPKVEGI 129 (678)
Q Consensus 104 ~~~~i~L~p~Etk~V~L~v~P~~~G~ 129 (678)
....-.|.|+++..|.+...|+..|.
T Consensus 70 ~P~~g~L~pg~~~~i~V~F~P~~~g~ 95 (122)
T 2ys4_A 70 EPAIGTLNVGESMQLEVEFEPQSVGD 95 (122)
T ss_dssp ESSEEEECTTCEEEEEEEECCSSSBC
T ss_pred ECCcCEECCCCEEEEEEEEEcCCCcc
Confidence 67889999999999999999998774
No 20
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=75.04 E-value=20 Score=32.34 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=50.5
Q ss_pred eeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005768 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 108 (678)
Q Consensus 29 ~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 108 (678)
....|+++++.++++|==..+..=-.|.|.. ++.. +....+
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyv-----ng~~----------------------------------v~t~~v 68 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKVRVYI-----NGTL----------------------------------YKNWTV 68 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEEEEEE-----TTEE----------------------------------EEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEEEEEE-----CCEE----------------------------------EeeEEe
Confidence 4568999999999999888886655555542 1111 012355
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEEEE
Q 005768 109 SLGGAETILVQLMVTPKVEGILKIVGV 135 (678)
Q Consensus 109 ~L~p~Etk~V~L~v~P~~~G~L~I~Gv 135 (678)
.|+|++++++.+..+|...|.+.|.-+
T Consensus 69 ~La~G~s~tv~f~~~~~~~G~~~v~Av 95 (127)
T 3idu_A 69 SLGPKEEKVLTFNWTPTQEGMYRINAT 95 (127)
T ss_dssp EECTTCEEEEEEEECCSSCEEEEEEEE
T ss_pred ccCCCCeEEEEEEEEcCCCcEEEEEEE
Confidence 799999999999999999998887644
No 21
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=74.00 E-value=4.2 Score=37.35 Aligned_cols=76 Identities=11% Similarity=-0.022 Sum_probs=46.6
Q ss_pred CCCeEEEEEecCCc-cccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCC
Q 005768 180 SLPKLEGLIHPLPE-RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGN 258 (678)
Q Consensus 180 ~~P~L~v~~~~lP~-~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~ 258 (678)
.+|.+.+.-..+.- .+..|+...-.|+|+|.|..|+..= |-...+..
T Consensus 23 ~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~-----------f~~~~~~~--------------------- 70 (140)
T 3qbt_B 23 FLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFS-----------FIPKLNDS--------------------- 70 (140)
T ss_dssp TSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEE-----------EECCTTCS---------------------
T ss_pred cCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEE-----------EecCCCch---------------------
Confidence 45555553222221 3677888999999999999999863 11110000
Q ss_pred CCCCCcceeec-CCCcccCCCCeEEEEEEEEe
Q 005768 259 FNKMPQAVFSF-PEGISIQGETPLLWPLWYRA 289 (678)
Q Consensus 259 ~~~~~~~v~~l-p~~~~L~pGes~~~plwlra 289 (678)
...+..|.+ |..+.|.||++..+.|.+..
T Consensus 71 --~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 71 --QYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp --SSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred --hhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 000112222 55679999999999999984
No 22
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=73.83 E-value=18 Score=32.24 Aligned_cols=70 Identities=21% Similarity=0.199 Sum_probs=48.5
Q ss_pred ccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCC
Q 005768 198 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 277 (678)
Q Consensus 198 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~p 277 (678)
|..+...|+|+|.+..++.. +|+++.|+.+++. |..+.|+|
T Consensus 26 ~~~~~~~l~L~N~s~~~vaF-KVKTT~p~~y~Vr--------------------------------------P~~G~i~P 66 (128)
T 1z9l_A 26 TDVVTTNLKLQNPSDRKVCF-KVKTTAPRRYCVR--------------------------------------PNSGVIDP 66 (128)
T ss_dssp SSCEEEEEEEECCSSSCEEE-EEEESCGGGEEEE--------------------------------------SCEEEECT
T ss_pred CceEEEEEEEECCCCCeEEE-EEECCCCCceEEe--------------------------------------CCCcEECC
Confidence 46778999999999877754 5777777555443 22458999
Q ss_pred CCeEEEEEEEEeC--CC-CeEEEEEEEEeeeC
Q 005768 278 ETPLLWPLWYRAA--VP-GKISLSITIYYEMG 306 (678)
Q Consensus 278 Ges~~~plwlrap--~~-G~~~l~~LfyYe~~ 306 (678)
|++..+.+++++. .+ ....=+|++++...
T Consensus 67 ~~s~~v~V~~~~~~~~p~~~~~dkF~V~s~~~ 98 (128)
T 1z9l_A 67 GSIVTVSVMLQPFDYDPNEKSKHKFMVQTIFA 98 (128)
T ss_dssp TCEEEEEEEECCCCCCTTCCCCCEEEEEEEEC
T ss_pred CCeEEEEEEECcCcCCcccccCCEEEEEEEEC
Confidence 9999999999974 22 12233666766543
No 23
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=72.98 E-value=3.5 Score=38.47 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=47.0
Q ss_pred ccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCC
Q 005768 198 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 277 (678)
Q Consensus 198 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~p 277 (678)
+..+...|+|+|.+..++.. +|+++.|+.|++. |..+.|+|
T Consensus 34 ~~~~~~~l~L~N~s~~~VaF-KVKTT~p~~y~Vr--------------------------------------P~~GiI~P 74 (152)
T 1wic_A 34 SGEKKTLIVLTNVTKNIVAF-KVRTTAPEKYRVK--------------------------------------PSNSSCDP 74 (152)
T ss_dssp SSCCCEEEEEEBCSSSCEEE-EEEESCTTTEEEE--------------------------------------SSEEEECT
T ss_pred CceEEEEEEEEcCCCCeEEE-EEECCCCCceeec--------------------------------------CCCcEECC
Confidence 44457899999999877754 5777777555543 22468999
Q ss_pred CCeEEEEEEEEeCCCCeEEEEEEEEeee
Q 005768 278 ETPLLWPLWYRAAVPGKISLSITIYYEM 305 (678)
Q Consensus 278 Ges~~~plwlrap~~G~~~l~~LfyYe~ 305 (678)
|++..+.+++++.......=+|++++..
T Consensus 75 ~~s~~V~V~lq~~~~~~~kDKFlVqs~~ 102 (152)
T 1wic_A 75 GASIDIIVSPHGGLTVSAQDRFLIMAAE 102 (152)
T ss_dssp TCEEEEEEEECSSSCCCSSCCEEEEEEE
T ss_pred CCeEEEEEEecCcccCCCCCEEEEEEEE
Confidence 9999999999985211212256666643
No 24
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=72.46 E-value=13 Score=34.01 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.4
Q ss_pred eEEEEEEEeCCccCcEEeeeEEEEEEE
Q 005768 35 PVKVDIEFKNPLQIPISISNISLICEL 61 (678)
Q Consensus 35 pi~V~V~L~NPL~ipL~Ls~I~L~~~f 61 (678)
+|.+.+.++||..+||.++.+.+...+
T Consensus 19 ~~~~~l~V~NPN~~~l~i~gl~y~v~l 45 (136)
T 3but_A 19 EIVALAKVRNEDVVPIVVSGYHYTIEM 45 (136)
T ss_dssp EEEEEEEEECCSSSCEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcceeeeceEEEEEE
Confidence 489999999999999999988776553
No 25
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=69.35 E-value=85 Score=30.40 Aligned_cols=155 Identities=10% Similarity=0.112 Sum_probs=90.3
Q ss_pred ccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcc
Q 005768 195 AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 274 (678)
Q Consensus 195 ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~ 274 (678)
+-.|+.....++++|.|..|+.=-.+.+ |.++.+. +....
T Consensus 15 v~~g~~~~~~~~i~N~g~~pl~i~~~~~--p~~~~~~--------------------------------------~~~~~ 54 (220)
T 2qsv_A 15 SMPEDEGVVRLVVNNTDESDLQVAVVSL--PSFVSLD--------------------------------------DRAFR 54 (220)
T ss_dssp BCTTCCCEEEEEEEECSSSCEEEEEEEC--CTTEECS--------------------------------------CCEEE
T ss_pred ccCCCcceEEEEEEeCCCCceEEEeccC--CCceEee--------------------------------------eCcce
Confidence 5679999999999999999987543422 3232221 11348
Q ss_pred cCCCCeEEEEEEEEeCC---CCeEEEEEEEEeeeC-CCCccceEEEEEEEEEEEEec-----------eeEEEEEEee--
Q 005768 275 IQGETPLLWPLWYRAAV---PGKISLSITIYYEMG-DVSSVIKYRLLRMHYNLEVLP-----------SLNVSFQISP-- 337 (678)
Q Consensus 275 L~pGes~~~plwlrap~---~G~~~l~~LfyYe~~-~~~~~~~~R~lR~~~~v~V~p-----------SL~vs~~~~~-- 337 (678)
|+||++.++.+.+-+.. .|...-.+.++.... +... ... ++...-.+.| .+.++ ....
T Consensus 55 I~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~~~~~~---~~~-~i~v~g~v~p~~~~~~~~~~~~i~~~-~~~dfG 129 (220)
T 2qsv_A 55 LQAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSPETGKK---AVD-SVMVSLPLVDNFPALTAAQTGVMELS-TYLDMG 129 (220)
T ss_dssp ECSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECTTTCCE---EEE-EEEEEEEECCCGGGCCGGGCCCEECC-CEEEEE
T ss_pred eCCCCceEEEEEEcchhcccCCceeeEEEEEEEcCCCCcc---ccc-EEEEEEEEcccchhhhhccCCEEEEE-eEEeee
Confidence 89999999999998763 466655555555431 1110 111 3334433443 23332 1111
Q ss_pred cccccceEEEEEEEEeCCCCCcEEEEEEEeeeeceEEeeeCCCcccCCCcccCccceeeEEEEEeec
Q 005768 338 WSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR 404 (678)
Q Consensus 338 s~s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~~W~i~~l~~~~si~~~~~l~p~q~~~~~f~~~~~ 404 (678)
... -...--.+.++|.... .+.|.++.+.+..=..+. +...+.||+...+-+.....
T Consensus 130 ~i~-g~~~~~~f~i~N~G~~-pL~I~~v~~scgct~~~~--------~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 130 QLD-GETTKAAIEIRNVGAG-PLRLHSVTTRNPALTAVP--------DRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp ECT-TSCEEEEEEEEECSSS-CEEEEEEEECSTTEEEEE--------SCSEECTTCEEEEEEEECHH
T ss_pred ccC-CCeEEEEEEEEECCCC-CEEEEEEEeCCCCEeeec--------CCccCCCCCEEEEEEEEecC
Confidence 111 2345567889996654 788888887665544442 13458888877665444443
No 26
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=69.30 E-value=24 Score=35.35 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=48.9
Q ss_pred eeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005768 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 108 (678)
Q Consensus 29 ~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 108 (678)
-++.||.+.+.+.+.|=++-.+.++ +.| ...++.... . .....+ ...+
T Consensus 91 sv~rGE~~~l~~~V~Ny~~~~~~v~-V~l----~~~~~~~~~-~-----------------------~~~~~~---~~~v 138 (252)
T 3hrz_B 91 SVVKNEQVEIRAILHNYVNEDIYVR-VEL----LYNPAFCSA-S-----------------------TKGQRY---RQQF 138 (252)
T ss_dssp CEETTCCEEEEEEEEECSSSCEEEE-EEE----CCCTTEEES-C-----------------------CSSCCE---EEEE
T ss_pred EEeeCCEEEEEEEEEcccCceEEEE-EEE----EcCCceEee-c-----------------------CCCCce---EEEE
Confidence 4568999999999999998776542 222 222111000 0 000001 3579
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEE
Q 005768 109 SLGGAETILVQLMVTPKVEGILKIV 133 (678)
Q Consensus 109 ~L~p~Etk~V~L~v~P~~~G~L~I~ 133 (678)
.+.+++++.+.+.++|++.|.+.|+
T Consensus 139 ~v~a~~~~~v~f~i~p~~~G~~~i~ 163 (252)
T 3hrz_B 139 PIKALSSRAVPFVIVPLEQGLHDVE 163 (252)
T ss_dssp EECTTEEEEEEEEEEECSSEEEEEE
T ss_pred EECCCCeEEEEEEEEeccCCcEEEE
Confidence 9999999999999999999987665
No 27
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=68.74 E-value=27 Score=30.19 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=58.8
Q ss_pred CCeEEEEEecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 005768 181 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 260 (678)
Q Consensus 181 ~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 260 (678)
-|.|.+.+. ...-.|+-..+.++|+|.=..||++. .|+++... |.+
T Consensus 5 ~P~i~I~v~---g~~~v~~~l~v~vsf~NPL~~~L~~c--------~~~vEG~G---------L~~-------------- 50 (102)
T 2xzz_A 5 QSMLSLTLL---GAAVVGQECEVQIVFKNPLPVTLTNV--------VFRLEGSG---------LQR-------------- 50 (102)
T ss_dssp -CEEEEEES---SCCCSSSCEEEEEEEECCSSSCBCSE--------EEEEEETT---------TEE--------------
T ss_pred CCcEEEEEC---CCcccCCeEEEEEEEECCCCCcccCE--------EEEEECCC---------CCc--------------
Confidence 366777664 44567999999999999999999998 45554321 100
Q ss_pred CCCcceeecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEe
Q 005768 261 KMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 303 (678)
Q Consensus 261 ~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 303 (678)
...+.+ ..++||++.++.+.+.....|.++|---|.-
T Consensus 51 ---~~~~~~---~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~s 87 (102)
T 2xzz_A 51 ---PKILNV---GDIGGNETVTLRQSFVPVRPGPRQLIASLDS 87 (102)
T ss_dssp ---EEEEEE---CCBCTTCEEEEEEEECCCSCSSCCCEEEEEC
T ss_pred ---ceEEEc---CcCCCCCEEEEEEEEecCcccceEEEEEEEC
Confidence 012233 3689999999999999988888876555543
No 28
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=63.23 E-value=22 Score=31.89 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=49.7
Q ss_pred eEeEEEEEEecCCceEEEEEEecCCCCCCCCCccccCCCCCCCCCCCCCcccccccccceecccCCcccccccccccccC
Q 005768 522 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 601 (678)
Q Consensus 522 ~vpV~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (678)
.+.++|++.|-+...+.+.... +|. | |..|... .|..+++=+ ...
T Consensus 19 ~v~~~ltv~N~s~~~v~l~f~S-------gq~------------------~------Df~v~d~-~G~~VwrwS---~~~ 63 (120)
T 3isy_A 19 QIKFNMSLKNQSERAIEFQFST-------GQK------------------F------ELVVYDS-EHKERYRYS---KEK 63 (120)
T ss_dssp CEEEEEEEEECSSSCEEEEESS-------SCC------------------E------EEEEECT-TCCEEEETT---TTC
T ss_pred eEEEEEEEEcCCCCcEEEEeCC-------CCE------------------E------EEEEECC-CCCEEEEcc---ccc
Confidence 7889999999999888877663 222 2 3333221 122222000 011
Q ss_pred ceEEeccccceEEeCCCceeEEEeEEE-EecceeeecCCcEEEEEE
Q 005768 602 PFIWSGSSASSVRLQPMSTTDIAMKVC-LFSPGTYDLSNYALNWKL 646 (678)
Q Consensus 602 ~f~w~g~~~~~~~l~p~~~~~i~l~~~-~~~pGvYdl~~~~~~~~~ 646 (678)
-|+ +......|+||++......|- ...||.| .|.+.+
T Consensus 64 ~Ft---Qa~~~~tl~pGE~~~f~~~w~~~~~pG~Y-----tl~a~l 101 (120)
T 3isy_A 64 MFT---QAFQNLTLESGETYDFSDVWKEVPEPGTY-----EVKVTF 101 (120)
T ss_dssp CCC---CCCEEEEECTTCEEEEEEEESSCCCSEEE-----EEEEEE
T ss_pred hhh---hhhceEEECCCCEEEEEEEeCCCCCCccE-----EEEEEE
Confidence 121 244467799999999999998 5667765 666777
No 29
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=59.05 E-value=24 Score=37.32 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=47.2
Q ss_pred cCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCccc
Q 005768 196 YAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISI 275 (678)
Q Consensus 196 l~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L 275 (678)
.-|-..+++++++|.|..|+.-=...+..-+|+-.. -.+.+..+|..+-. ..-+.+.++..|
T Consensus 261 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~-~~~~~~~~P~~lla-----------------~~gL~vsd~~pI 322 (382)
T 1yew_A 261 VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSD-VYKDTTGYPEDLLA-----------------EDGLSVSDNSPL 322 (382)
T ss_dssp SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTT-TCCCCSCCCGGGEE-----------------TTCEEESCCSCB
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCc-ccccCCCChHHhhc-----------------cCCceeCCCCCc
Confidence 357778999999999999987665555554444321 11111122221110 112334446789
Q ss_pred CCCCeEEEEEEEEeC
Q 005768 276 QGETPLLWPLWYRAA 290 (678)
Q Consensus 276 ~pGes~~~plwlrap 290 (678)
+|||++++.+..+..
T Consensus 323 ~PGETr~~~v~a~da 337 (382)
T 1yew_A 323 APGETRTVDVTASDA 337 (382)
T ss_dssp CTTCEEEEEEEEECH
T ss_pred CCCceeEEEEEeehH
Confidence 999999999999863
No 30
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=57.15 E-value=19 Score=32.25 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=48.0
Q ss_pred EEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCCCC
Q 005768 200 LRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGET 279 (678)
Q Consensus 200 i~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGe 279 (678)
.+...|.|+|.+..++.. +|+++.|+-+++. |..+.|+||+
T Consensus 26 ~~~~~l~l~N~s~~~vaF-KVKTT~p~~y~Vr--------------------------------------P~~Gii~P~~ 66 (126)
T 1msp_A 26 KHTYHIKITNAGGRRIGW-AIKTTNMRRLSVD--------------------------------------PPCGVLDPKE 66 (126)
T ss_dssp CCCEEEEEEECSSSCEEE-EEEESCTTTEEEE--------------------------------------SCEEEECTTC
T ss_pred ceEEEEEEECCCCCeEEE-EEEcCCCCcEEEE--------------------------------------CCCeEECCCC
Confidence 466789999999887755 5777777554442 2246899999
Q ss_pred eEEEEEEEEeC--CC-CeEEEEEEEEeeeCC
Q 005768 280 PLLWPLWYRAA--VP-GKISLSITIYYEMGD 307 (678)
Q Consensus 280 s~~~plwlrap--~~-G~~~l~~LfyYe~~~ 307 (678)
+..+.+++++- .+ ....=+|++.|....
T Consensus 67 s~~v~V~~q~~~~~~~~~~kDKf~Vq~~~~p 97 (126)
T 1msp_A 67 KVLMAVSCDTFNAATEDLNNDRITIEWTNTP 97 (126)
T ss_dssp EEEEEEEECCCCGGGSCCSSCEEEEEEEECC
T ss_pred EEEEEEEecCCCCCCCccCCCEEEEEEEECC
Confidence 99999999983 11 223446777776543
No 31
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.03 E-value=13 Score=34.20 Aligned_cols=54 Identities=24% Similarity=0.235 Sum_probs=41.0
Q ss_pred ccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcccCC
Q 005768 198 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 277 (678)
Q Consensus 198 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~p 277 (678)
|..+...|+|+|.+..++.. +|+++.|+.+++. |..+.|+|
T Consensus 30 ~~~~~~~l~L~N~s~~~VaF-KVKTT~p~~y~Vr--------------------------------------P~~GiI~P 70 (147)
T 2cri_A 30 TDVVTTNLKLQNPSDRKVCF-KVKTTAPRRYCVR--------------------------------------PNSGIIDP 70 (147)
T ss_dssp SSCCCEEEEEECCSSSCEEE-EEEESCTTSEEEE--------------------------------------SSEEECCT
T ss_pred CceEEEEEEEECCCCCcEEE-EEECCCCccEEEc--------------------------------------CCCcEECC
Confidence 45677899999999877754 5777777555543 22458999
Q ss_pred CCeEEEEEEEEeC
Q 005768 278 ETPLLWPLWYRAA 290 (678)
Q Consensus 278 Ges~~~plwlrap 290 (678)
|++..+.+++++.
T Consensus 71 ~~s~~v~V~l~~~ 83 (147)
T 2cri_A 71 GSIVTVSVMLQPF 83 (147)
T ss_dssp TCEEEEEEEECCC
T ss_pred CCeEEEEEEECCC
Confidence 9999999999874
No 32
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=49.67 E-value=17 Score=34.42 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=55.8
Q ss_pred EEEcCCCeEEEEEecCC--ccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhcccccccc
Q 005768 176 IVIKSLPKLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQS 253 (678)
Q Consensus 176 ~Vi~~~P~L~v~~~~lP--~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~ 253 (678)
++.+.||| .|...- ..+.-||...+.-+.+|.+..|+....+ ..+.-. +. ..+
T Consensus 40 ~~~~~lpW---~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~G~A~-------ynV~P~-~a--------------~~Y 94 (164)
T 1so9_A 40 NVAAGLPW---EFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQAT-------FNVTPM-AA--------------GAY 94 (164)
T ss_dssp EECTTSCE---EEECSCSEEEECTTCCCCEEEEEEECSSSCEECCCE-------EEECSS-SC--------------STT
T ss_pred ecCCCCce---EEEeceeEEEEcCCCeEEEEEEEECCCCCcEEEEEC-------ceeCHH-HH--------------hhh
Confidence 34455665 343322 2488899999999999999998887522 222111 00 000
Q ss_pred ccCCCCCCCCcceeecCCCcccCCCCeEEEEEEEEe-C--C-------CCeEEEEEEEE
Q 005768 254 VAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRA-A--V-------PGKISLSITIY 302 (678)
Q Consensus 254 ~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlra-p--~-------~G~~~l~~Lfy 302 (678)
. + +-..|=|. ...|+|||++.+|+.+-= | . ..+..|.+.|+
T Consensus 95 F---~----KieCFCF~-eQ~L~pgE~~~MPV~F~IDP~i~~D~~~~~v~tITLSYTFf 145 (164)
T 1so9_A 95 F---N----KVQCFCFT-ETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFY 145 (164)
T ss_dssp B---T----TSCCSSCS-CCEECTTCEEEEEECCCBCGGGGSSTTTTTCCBCCEEEEEC
T ss_pred c---c----ceeeEccc-CcccCCCCeEeeeEEEEECCCcCCCcccCCCCEEEEEEEEE
Confidence 0 0 11233343 569999999999998853 2 1 24556677776
No 33
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=44.15 E-value=1.3e+02 Score=29.95 Aligned_cols=82 Identities=9% Similarity=0.061 Sum_probs=55.7
Q ss_pred cCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeec
Q 005768 190 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 269 (678)
Q Consensus 190 ~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~l 269 (678)
.+|..+..||...+.+.+.|.....++ +++.....+-|++...... . ...
T Consensus 87 ~LP~sv~rGE~~~l~~~V~Ny~~~~~~-v~V~l~~~~~~~~~~~~~~---------------------~----~~~---- 136 (252)
T 3hrz_B 87 QMPYSVVKNEQVEIRAILHNYVNEDIY-VRVELLYNPAFCSASTKGQ---------------------R----YRQ---- 136 (252)
T ss_dssp CCCSCEETTCCEEEEEEEEECSSSCEE-EEEEECCCTTEEESCCSSC---------------------C----EEE----
T ss_pred CCCcEEeeCCEEEEEEEEEcccCceEE-EEEEEEcCCceEeecCCCC---------------------c----eEE----
Confidence 789999999999999999999876654 4444443322332211000 0 001
Q ss_pred CCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEe
Q 005768 270 PEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 303 (678)
Q Consensus 270 p~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 303 (678)
...|.+|+++++++.+++...|.+.+.+-...
T Consensus 137 --~v~v~a~~~~~v~f~i~p~~~G~~~i~v~A~~ 168 (252)
T 3hrz_B 137 --QFPIKALSSRAVPFVIVPLEQGLHDVEIKASV 168 (252)
T ss_dssp --EEEECTTEEEEEEEEEEECSSEEEEEEEEEEE
T ss_pred --EEEECCCCeEEEEEEEEeccCCcEEEEEEEEe
Confidence 13677999999999999878898888877653
No 34
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=40.69 E-value=55 Score=37.92 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=50.7
Q ss_pred eeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005768 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 108 (678)
Q Consensus 29 ~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 108 (678)
-++.||.+.+.+.+.|=++-++.++ |+| ...++...... +. ....+
T Consensus 163 ~v~~GD~~~i~~~V~N~~~~~~~v~-v~l----~~~~~~~~~~~------------------------~~-----~~~~~ 208 (767)
T 4fxk_B 163 SVRRFEQLELRPVLYNYLDKNLTVS-VHV----SPVEGLCLAGG------------------------GG-----LAQQV 208 (767)
T ss_dssp CEETTCEEEECCEEEECSSSCEEEE-EEE----CCCTTEECSSS------------------------SC-----CCEEE
T ss_pred eeccCCEEEEEEEEEECCCCCEEEE-EEE----EecCCeEEecC------------------------Cc-----eeEEE
Confidence 4679999999999999998877652 333 33321110000 00 02689
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEEEE
Q 005768 109 SLGGAETILVQLMVTPKVEGILKIVGV 135 (678)
Q Consensus 109 ~L~p~Etk~V~L~v~P~~~G~L~I~Gv 135 (678)
.+.+++++.|.+.+.|...|.+.|.=.
T Consensus 209 ~v~a~~~~~v~f~i~~~~~G~~~i~v~ 235 (767)
T 4fxk_B 209 LVPAGSARPVAFSVVPTAAAAVSLKVV 235 (767)
T ss_dssp EECSSCEEECCEEEEECSCSEEEEEEE
T ss_pred EEcCCCeEEEEEEEEECccCcEEEEEE
Confidence 999999999999999999998777543
No 35
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=40.46 E-value=35 Score=32.46 Aligned_cols=60 Identities=28% Similarity=0.306 Sum_probs=43.0
Q ss_pred CceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcC
Q 005768 33 GEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGG 112 (678)
Q Consensus 33 gEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p 112 (678)
|-.+.+.+.++||-.+||.+..|....+.... ...+ . ...+.++|.+
T Consensus 61 ~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~--~las---------------G----------------~s~~~~tIpa 107 (174)
T 1yyc_A 61 GVDYHAKVSVKNPYSQSIPICQISYILKSATR--TIAS---------------G----------------TIPDPGSLVG 107 (174)
T ss_dssp SEEEEEEEEEEECSSSCCBCCSEEEEEEESSS--CEEE---------------E----------------EESCCCBCCS
T ss_pred eEEEEEEEEEECCCCCCccccceEEEEEECCE--EEEE---------------E----------------ecCCCceECC
Confidence 34588999999999999999999988763332 1111 1 0125678888
Q ss_pred CceEEEEEEEEeC
Q 005768 113 AETILVQLMVTPK 125 (678)
Q Consensus 113 ~Etk~V~L~v~P~ 125 (678)
..+.++.+.++-.
T Consensus 108 ~g~~~v~Vpv~v~ 120 (174)
T 1yyc_A 108 SGTTVLDVPVKVA 120 (174)
T ss_dssp SEEEEEEEEEEES
T ss_pred CCcEEEEEEEEEE
Confidence 8888888877763
No 36
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=37.97 E-value=1.1e+02 Score=32.75 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=27.7
Q ss_pred cccCccEEEEEEEEEecccccccceEEEecC
Q 005768 194 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSH 224 (678)
Q Consensus 194 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~ 224 (678)
.-+.||...+.+++.|.|+.+++.|++..-.
T Consensus 223 ~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q 253 (380)
T 3ugu_A 223 IYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQ 253 (380)
T ss_dssp EEETTCCEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred cCcCCCEEEEEEEEEcCCCCeEeEEEEEEEE
Confidence 3789999999999999999999999877654
No 37
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=37.85 E-value=33 Score=36.30 Aligned_cols=75 Identities=12% Similarity=-0.021 Sum_probs=0.0
Q ss_pred cCCCeEEEEEecCCcc-ccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCC
Q 005768 179 KSLPKLEGLIHPLPER-AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGG 257 (678)
Q Consensus 179 ~~~P~L~v~~~~lP~~-ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~ 257 (678)
+.+|.+++.-..+.-. +.-||.+.-.|+|+|.|.+|++. -|.-..
T Consensus 25 ~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f---------~f~~~~------------------------- 70 (366)
T 3qis_A 25 DFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHF---------SFIPKL------------------------- 70 (366)
T ss_dssp ---CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEE---------EEECCT-------------------------
T ss_pred ccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEE---------EEEeCC-------------------------
Q ss_pred CCCCCCcceeec-CCCcccCCCCeEEEEEEE
Q 005768 258 NFNKMPQAVFSF-PEGISIQGETPLLWPLWY 287 (678)
Q Consensus 258 ~~~~~~~~v~~l-p~~~~L~pGes~~~plwl 287 (678)
+.....+.-+.+ |..+.|.||++..+.+.+
T Consensus 71 ~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~ 101 (366)
T 3qis_A 71 NDSQYCKPWLRAEPFEGYLEPNETVDISLDV 101 (366)
T ss_dssp TCSSSSCTTEEEESCEEEECTTCEEEEEEEE
T ss_pred CCCCCCCCcEEEeCCccEECCCCEEEEEEEE
No 38
>2vvf_A Major capsid protein P2; double jelly-roll viral capsid, viral protein; 2.5A {Pseudoalteromonas phage PM2} PDB: 2w0c_A
Probab=36.16 E-value=3.6e+02 Score=27.32 Aligned_cols=117 Identities=12% Similarity=0.041 Sum_probs=66.1
Q ss_pred EEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecC---------
Q 005768 200 LRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP--------- 270 (678)
Q Consensus 200 i~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp--------- 270 (678)
...+.|+++|....-+++|+++.+.-+++.+.+.+++.. --+++ +......--+++|.
T Consensus 29 Y~~I~L~~T~~t~a~I~~I~VklNgk~i~~~~sg~~L~~----~n~yk---------g~~~~ag~~~i~Ftd~~~k~~~~ 95 (269)
T 2vvf_A 29 YEVIDLRYSGVTPSQIKNVRVELDGRLLSTYKTLNDLIL----ENTRH---------KRKIKAGVVSFHFVRPEMKGVNV 95 (269)
T ss_dssp EEEEEEEEESSCGGGEEEEEEEETTEEEEEEEETHHHHH----HHHHT---------TCCCBTTEEEEECSCTTCCCSSS
T ss_pred eEEEEEEEcCCCHHHheeEEEEECCEEEEEeccHHHHHH----HHHhc---------CccccCceEEEeccchhhccccc
Confidence 345677779999999999999999999999954433210 00000 01111111122221
Q ss_pred --------CCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEeeeCCCCccceEEEEEEEEEEEEeceeEEE
Q 005768 271 --------EGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVS 332 (678)
Q Consensus 271 --------~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~~~~~~~~~R~lR~~~~v~V~pSL~vs 332 (678)
.+-....|++.++-+.|-+...+. .++---++..+.+ ..+..|+..+++. .+.--.++.
T Consensus 96 ~t~~~~r~~~L~T~~g~~~~vEv~I~a~a~ap-~l~a~A~~s~~q~-~ri~~ki~~~~~~-~~aG~~ef~ 162 (269)
T 2vvf_A 96 TDLVQQRMFALGTVGLTTCEIKFDIDEAAAGP-KLSAIAQKSVGTA-PSWLTMRRNFFKQ-LNNGTTEIA 162 (269)
T ss_dssp CHHHHHHTTSEECTTCSCEEEEEEECTTCSSC-EEEEEEEEESCCC-SCEEEEEEEEEEE-ECSEEEEEC
T ss_pred cccceEEEeccccccCcEEEEEEEEcccCCCC-eeEEEEEEcCCCC-CeeEEeeeeeecc-cccCccccc
Confidence 122334589999999886543344 5655545554433 3455787777777 444434444
No 39
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=32.61 E-value=99 Score=33.09 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=25.1
Q ss_pred eeEEEcCCceEEEEEEEEeCceEEEEEE
Q 005768 106 VDISLGGAETILVQLMVTPKVEGILKIV 133 (678)
Q Consensus 106 ~~i~L~p~Etk~V~L~v~P~~~G~L~I~ 133 (678)
.++.|..+.+..-.+.++.+++|.-+|.
T Consensus 108 ~s~~l~~G~~Y~fki~lkaR~PG~~HVH 135 (419)
T 3rfr_A 108 RSVSLEIGKDYAFSINLRGRRAGRWHVH 135 (419)
T ss_dssp SCBCCCTTCEEEEEEEEEECSCEEEEEE
T ss_pred ceEEecCCCeEeEEEEEecccCcccccc
Confidence 6788999999999999999999998874
No 40
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=32.58 E-value=1.8e+02 Score=34.55 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=47.8
Q ss_pred eeEcCceEEEEEEEeCCcc-CcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005768 29 ICVAGEPVKVDIEFKNPLQ-IPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 107 (678)
Q Consensus 29 ~~vvgEpi~V~V~L~NPL~-ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 107 (678)
-++.||.+.+.+.+.|=++ -++.+ ++ ++...++ ..... ... ......
T Consensus 90 ~v~~GD~~~i~~~v~N~~~~~~~~v---~v--~l~~~~~-~~~~~-----------------------~~~---~~~~~~ 137 (915)
T 2hr0_B 90 SVVRNEQVEIRAVLYNYRQNQELKV---RV--ELLHNPA-FCSLA-----------------------TTK---RRHQQT 137 (915)
T ss_dssp EEETTCCEEEEEEEEECCSSCCEEE---EE--EECCCTT-EECSC-----------------------CSS---SCEEEE
T ss_pred EEecCcEEEEEEEEEcCCCCeeEEE---EE--EEecCCc-eEeec-----------------------CCC---CcceeE
Confidence 4678999999999999888 66543 22 2323211 11000 000 001368
Q ss_pred EEEcCCceEEEEEEEEeCceEEEEEE
Q 005768 108 ISLGGAETILVQLMVTPKVEGILKIV 133 (678)
Q Consensus 108 i~L~p~Etk~V~L~v~P~~~G~L~I~ 133 (678)
+.|.+++++.|.+.+.|...|.+.|.
T Consensus 138 v~l~~~~~~~v~f~i~~~~~G~~~i~ 163 (915)
T 2hr0_B 138 VTIPPKSSLSVPYVIVPLKTGLQEVE 163 (915)
T ss_dssp EEECTTEEEEEEEEEEECSCEEEEEE
T ss_pred EEECCCCeEEEEEEEEECccceEEEE
Confidence 99999999999999999998876643
No 41
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=32.50 E-value=1.4e+02 Score=37.91 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=48.6
Q ss_pred eeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005768 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 108 (678)
Q Consensus 29 ~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 108 (678)
-++.||.+.+.+.+.|=++-++.+ ..++..+++ ..... ..+..+ ...+
T Consensus 823 sv~rGEq~~l~v~VfNy~~~~~~V-----~V~L~~s~~-~~~~~-----------------------~~~~~~---~q~v 870 (1642)
T 3prx_B 823 SVVKNEQVEIRAILHNYVNEDIYV-----RVELLYNPA-FCSAS-----------------------TKGQRY---RQQF 870 (1642)
T ss_dssp CEETTCCEEEEEEEEECSSSCEEE-----EEEECCCTT-EEESC-----------------------CSSSCC---EEEE
T ss_pred EEecCCEEEEEEEEEcCCCCcEEE-----EEEEEcCCC-eEeec-----------------------cCCCcc---eeEE
Confidence 456899999999999999877654 222223211 11000 000001 3678
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEE
Q 005768 109 SLGGAETILVQLMVTPKVEGILKIV 133 (678)
Q Consensus 109 ~L~p~Etk~V~L~v~P~~~G~L~I~ 133 (678)
.|.+++.++|.+.++|++.|...|+
T Consensus 871 ~v~a~~~~~v~f~i~p~~~G~~~i~ 895 (1642)
T 3prx_B 871 PIKALSSRAVPFVIVPLEQGLHDVE 895 (1642)
T ss_dssp EECSSEEEEEEEEEEECSCEEEEEE
T ss_pred EECCCCeEEEEEEEEEeecccEEEE
Confidence 9999999999999999999977654
No 42
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=30.61 E-value=44 Score=30.83 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=40.7
Q ss_pred eEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcCCc
Q 005768 35 PVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAE 114 (678)
Q Consensus 35 pi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~E 114 (678)
.+.+.+.++||-.++|.+..|....+.... ... .. ...+..++.+..
T Consensus 40 ~~~~~l~V~NPN~~~lpi~gi~y~l~vng~--~la---------------sG----------------~~~~~~~ipa~g 86 (151)
T 1xo8_A 40 EYLAKVSVTNPYSHSIPICEISFTFHSAGR--EIG---------------KG----------------KIPDPGSLKAKD 86 (151)
T ss_dssp CEEEEEEEECSSSSCCCCEEEEEEEESSSS--CEE---------------EE----------------EEEECCCCSSSS
T ss_pred EEEEEEEEECCCCCCcccccEEEEEEECCE--EEE---------------EE----------------ecCCCcEECCCC
Confidence 588999999999999999999987652221 111 11 113678888888
Q ss_pred eEEEEEEEEe
Q 005768 115 TILVQLMVTP 124 (678)
Q Consensus 115 tk~V~L~v~P 124 (678)
+.++.+.++-
T Consensus 87 ~~~v~vpv~v 96 (151)
T 1xo8_A 87 MTALDIPVVV 96 (151)
T ss_dssp EEEEEECCCE
T ss_pred cEEEEEEEEE
Confidence 8888876664
No 43
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=29.36 E-value=7.5e+02 Score=29.02 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=56.1
Q ss_pred ecCCccccCccEEEEEEEEEeccc-ccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCccee
Q 005768 189 HPLPERAYAGDLRHLVLELKNQSD-FSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVF 267 (678)
Q Consensus 189 ~~lP~~ll~GEi~~~~l~L~N~G~-~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~ 267 (678)
..+|..+..||...+.+.|.|... .++ .+.+......-++....... ....
T Consensus 85 ~~LP~~v~~GD~~~i~~~v~N~~~~~~~-~v~v~l~~~~~~~~~~~~~~-------------------------~~~~-- 136 (915)
T 2hr0_B 85 LRLPYSVVRNEQVEIRAVLYNYRQNQEL-KVRVELLHNPAFCSLATTKR-------------------------RHQQ-- 136 (915)
T ss_dssp EECCSEEETTCCEEEEEEEEECCSSCCE-EEEEEECCCTTEECSCCSSS-------------------------CEEE--
T ss_pred ccCCCEEecCcEEEEEEEEEcCCCCeeE-EEEEEEecCCceEeecCCCC-------------------------ccee--
Confidence 368999999999999999999988 554 46666554332332211000 0001
Q ss_pred ecCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEe
Q 005768 268 SFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 303 (678)
Q Consensus 268 ~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 303 (678)
...|++|++.++++.|++...|.+.+.+....
T Consensus 137 ----~v~l~~~~~~~v~f~i~~~~~G~~~i~v~a~~ 168 (915)
T 2hr0_B 137 ----TVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAV 168 (915)
T ss_dssp ----EEEECTTEEEEEEEEEEECSCEEEEEEEEEEE
T ss_pred ----EEEECCCCeEEEEEEEEECccceEEEEEEEEe
Confidence 13667999999999999778888888876643
No 44
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=28.99 E-value=1.3e+02 Score=37.87 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=47.6
Q ss_pred eeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005768 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 108 (678)
Q Consensus 29 ~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 108 (678)
-++.||.+.+.+.+.|=++-++.+ .|. +..+++ ... ..... ....+
T Consensus 778 sv~rGE~~~l~~~V~N~~~~~~~v-~V~----l~~~~~-~~~------------~~~~~----------------~~~~v 823 (1451)
T 4acq_A 778 SVIRGEAFTLKATVLNYLPKCIRV-SVQ----LEASPA-FLA------------VPVEK----------------EQAPH 823 (1451)
T ss_dssp EEESSSCEEEEEEEEECSSSCEEE-EEE----ECCCTT-EEE------------EESCS----------------CCCCE
T ss_pred eEecCCEEEEEEEEEeccCccEEE-EEE----EEcCCC-eEe------------ecCCC----------------CceEE
Confidence 356899999999999998876654 122 222211 100 00000 02578
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEE
Q 005768 109 SLGGAETILVQLMVTPKVEGILKIV 133 (678)
Q Consensus 109 ~L~p~Etk~V~L~v~P~~~G~L~I~ 133 (678)
.|.+++.+.+.+.++|.+.|...|.
T Consensus 824 ~l~~~~~~~v~f~v~p~~~G~~~i~ 848 (1451)
T 4acq_A 824 CICANGRQTVSWAVTPKSLGNVNFT 848 (1451)
T ss_dssp EECTTEEEEEEEEEEECSCEEEEEE
T ss_pred EECCCCeEEEEEEEEECccceEEEE
Confidence 9999999999999999999987654
No 45
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=28.08 E-value=86 Score=27.11 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=17.2
Q ss_pred EEEEEEEEecccccccceEEEecCCce
Q 005768 201 RHLVLELKNQSDFSVKNLKMKVSHPRF 227 (678)
Q Consensus 201 ~~~~l~L~N~G~~pl~~l~v~~s~p~~ 227 (678)
..++|+++|.|..|+. +-||=+|
T Consensus 20 ~~~~l~V~NtGDRPIQ----VGSHyHF 42 (101)
T 4ep8_B 20 ATCRVVVENHGDRPIQ----VGSHYHF 42 (101)
T ss_dssp CEEEEEEEECSSSCEE----EETTSCG
T ss_pred CEEEEEEEeCCCcceE----EccccCh
Confidence 5789999999999875 3455444
No 46
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=24.40 E-value=1.2e+02 Score=27.31 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=38.3
Q ss_pred ccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcc
Q 005768 195 AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 274 (678)
Q Consensus 195 ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~ 274 (678)
+..| ..+++|+++|.|..|+. +-||=+|+-. +..|+|....++.... .+..... ..
T Consensus 21 lN~g-r~~~~l~V~NtGDRPIQ----VGSHyHF~E~----N~aL~FDR~~A~G~RL---------dIpAGTa------vR 76 (126)
T 4ac7_B 21 INAG-REKTTIRVSNTGDRPIQ----VGSHIHFVEV----NKELLFDRAEGIGRRL---------NIPSGTA------AR 76 (126)
T ss_dssp TTTT-SCEEEEEEEECSSSCEE----EETTSCGGGS----CTTEESCGGGGTTEEE---------CSCTTCE------EE
T ss_pred eCCC-CcEEEEEEEeCCCCCEE----Eccccchhhc----CchhhccHhhhcCccc---------cccCCCe------Ee
Confidence 4444 35689999999999975 3455444321 2223332222221111 1111223 45
Q ss_pred cCCCCeEEEEEEEEe
Q 005768 275 IQGETPLLWPLWYRA 289 (678)
Q Consensus 275 L~pGes~~~plwlra 289 (678)
.+||+++++.|.=-|
T Consensus 77 FEPG~~k~V~LV~~~ 91 (126)
T 4ac7_B 77 FEPGEEMEVELTELG 91 (126)
T ss_dssp ECTTCEEEEEEEECC
T ss_pred eCCCCeEEEEEEEcc
Confidence 579999999986443
No 47
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=24.40 E-value=1.2e+02 Score=27.31 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=38.3
Q ss_pred ccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeecCCCcc
Q 005768 195 AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 274 (678)
Q Consensus 195 ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~ 274 (678)
+..| ..+++|+++|.|..|+. +-||=+|+-. +..|+|....++.... .+..... ..
T Consensus 21 lN~g-r~~~~l~V~NtGDRPIQ----VGSHyHF~E~----N~aL~FDR~~A~G~RL---------dIpAGTa------vR 76 (126)
T 4ubp_B 21 INAG-REKTTIRVSNTGDRPIQ----VGSHIHFVEV----NKELLFDRAEGIGRRL---------NIPSGTA------AR 76 (126)
T ss_dssp TTTT-SCEEEEEEEECSSSCEE----EETTSCGGGS----CTTEESCGGGGTTEEE---------CSCTTCE------EE
T ss_pred eCCC-CcEEEEEEEeCCCCCEE----Eccccchhhc----CchhhccHhhhcCccc---------cccCCCe------Ee
Confidence 4444 35689999999999975 3455444321 2223332222221111 1111223 45
Q ss_pred cCCCCeEEEEEEEEe
Q 005768 275 IQGETPLLWPLWYRA 289 (678)
Q Consensus 275 L~pGes~~~plwlra 289 (678)
.+||+++++.|.=-|
T Consensus 77 FEPG~~k~V~LV~~~ 91 (126)
T 4ubp_B 77 FEPGEEMEVELTELG 91 (126)
T ss_dssp ECTTCEEEEEEEECC
T ss_pred eCCCCeEEEEEEEcc
Confidence 579999999986443
No 48
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=22.84 E-value=3.1e+02 Score=34.81 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=48.2
Q ss_pred eeEcCceEEEEEEEeCCcc-CcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005768 29 ICVAGEPVKVDIEFKNPLQ-IPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 107 (678)
Q Consensus 29 ~~vvgEpi~V~V~L~NPL~-ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 107 (678)
-++.||.+.+.+.+.|=++ -++.+ ..++...++ ..... .+. ......
T Consensus 837 sv~~GD~~~i~~~V~N~~~~~~~~v-----~v~l~~~~~-~~~~~-----------------------~~~---~~~~~~ 884 (1661)
T 2b39_A 837 SVVRNEQVEIRAILYNYREAENLKV-----RVELLYNPA-FCSLA-----------------------TAK---KRHQQT 884 (1661)
T ss_dssp CEESSCEEEEEEEEEECCTTCCEEE-----EEEECCCTT-EECSS-----------------------CSS---CCCEEE
T ss_pred EEEeCCEEEEEEEEEcCCCCccEEE-----EEEEcCCCC-eEeec-----------------------CCC---CcceEE
Confidence 4678999999999999888 66553 222333221 11000 000 001368
Q ss_pred EEEcCCceEEEEEEEEeCceEEEEEE
Q 005768 108 ISLGGAETILVQLMVTPKVEGILKIV 133 (678)
Q Consensus 108 i~L~p~Etk~V~L~v~P~~~G~L~I~ 133 (678)
+.|.+++++.|.+.++|.+.|.+.|.
T Consensus 885 v~v~a~~~~~v~f~i~p~~~G~~~i~ 910 (1661)
T 2b39_A 885 ITIPARSSVAVPYVIVPLKIGLHEVE 910 (1661)
T ss_dssp EEECTTCEEEEEEEEEECSCEEEEEE
T ss_pred EEECCCCcEEEEEEEEEcccCeEEEE
Confidence 99999999999999999998877553
No 49
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=22.71 E-value=2.7e+02 Score=24.01 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=20.9
Q ss_pred eEEeccccceEEeCCCceeEEEeEEEEe
Q 005768 603 FIWSGSSASSVRLQPMSTTDIAMKVCLF 630 (678)
Q Consensus 603 f~w~g~~~~~~~l~p~~~~~i~l~~~~~ 630 (678)
+.|.|.. .+.|+|++...+++.+.+.
T Consensus 59 l~~~g~~--~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 59 VSWYGKQ--TIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp CEEESCC--EEEECTTCEEEEEEEEEEC
T ss_pred cEEeCCC--cEEECCCCEEEEEEEEEEC
Confidence 5577743 5999999999999988774
No 50
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=22.49 E-value=1.3e+02 Score=27.24 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=21.6
Q ss_pred EeccccceEEeCCCceeEEEeEEEEecc
Q 005768 605 WSGSSASSVRLQPMSTTDIAMKVCLFSP 632 (678)
Q Consensus 605 w~g~~~~~~~l~p~~~~~i~l~~~~~~p 632 (678)
|..-.-.+..|.|+++..|.+.+++-..
T Consensus 76 wl~v~P~~G~L~Pge~~~I~v~~~v~~~ 103 (140)
T 3qbt_B 76 WLRAEPFEGYLEPNETVDISLDVYVSKD 103 (140)
T ss_dssp TEEEESCEEEECTTCEEEEEEEECBCHH
T ss_pred hhhcCCcccccCCCCeeEEEEEEEEccC
Confidence 3333456789999999999999998553
No 51
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=21.99 E-value=4e+02 Score=23.34 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=47.9
Q ss_pred eeEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005768 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 108 (678)
Q Consensus 29 ~~vvgEpi~V~V~L~NPL~ipL~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 108 (678)
-++.||.+.+.+.+.|=|+-.+.+. +.|. .+.+.... + . .....
T Consensus 17 sv~rgE~~~~~~~V~nyl~~~~~v~-v~L~----~s~~~~~~-----------------~-------------~-~~~t~ 60 (118)
T 3es6_B 17 SVRPNDEVTAVLAVQTELKECMVVK-TYLI----SSIPLQGA-----------------F-------------N-YKYTA 60 (118)
T ss_dssp EECSSCCEEEEEEEEECCSSCEEEE-EEEE----ESSCCCSG-----------------G-------------G-CEEEE
T ss_pred eEecCCEEEEEEEEEecccceEEEE-EEec----CCcCEEcc-----------------C-------------C-CcccE
Confidence 4678999999999999999888774 4443 22111100 0 0 02567
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEEEEEE
Q 005768 109 SLGGAETILVQLMVTPKVEGILKIVGVRW 137 (678)
Q Consensus 109 ~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~ 137 (678)
-|.+.+.+++...++|. |...|+....
T Consensus 61 Clc~~~~~t~~W~i~~l--g~vniTvsAe 87 (118)
T 3es6_B 61 CLCDDNPKTFYWDFYTN--RTVQIAAVVD 87 (118)
T ss_dssp EECSSSCEEEEEEECCS--SCEEEEEEEE
T ss_pred EecCCCceEEEEEEEeC--CeEEEEEEEE
Confidence 79999999999999885 5555554443
No 52
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=20.98 E-value=3.3e+02 Score=31.26 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=54.8
Q ss_pred ecCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceee
Q 005768 189 HPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFS 268 (678)
Q Consensus 189 ~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~ 268 (678)
..+|..+..||...+.+.+.|....+++ +.+.....+-+++..... . ..
T Consensus 158 ~~lP~~v~~GD~~~i~~~V~N~~~~~~~-v~v~l~~~~~~~~~~~~~--------------------------~-~~--- 206 (767)
T 4fxk_B 158 LRLPMSVRRFEQLELRPVLYNYLDKNLT-VSVHVSPVEGLCLAGGGG--------------------------L-AQ--- 206 (767)
T ss_dssp CCCCSCEETTCEEEECCEEEECSSSCEE-EEEEECCCTTEECSSSSC--------------------------C-CE---
T ss_pred cCCCCeeccCCEEEEEEEEEECCCCCEE-EEEEEEecCCeEEecCCc--------------------------e-eE---
Confidence 3688999999999999999999876653 344443322222211100 0 01
Q ss_pred cCCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEe
Q 005768 269 FPEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 303 (678)
Q Consensus 269 lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 303 (678)
...|++|++..+++.|++...|...+.+.-..
T Consensus 207 ---~~~v~a~~~~~v~f~i~~~~~G~~~i~v~A~~ 238 (767)
T 4fxk_B 207 ---QVLVPAGSARPVAFSVVPTAAAAVSLKVVARG 238 (767)
T ss_dssp ---EEEECSSCEEECCEEEEECSCSEEEEEEEEEE
T ss_pred ---EEEEcCCCeEEEEEEEEECccCcEEEEEEEEe
Confidence 12577999999999999888899888876654
No 53
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=20.69 E-value=6.2e+02 Score=31.68 Aligned_cols=80 Identities=8% Similarity=0.025 Sum_probs=56.0
Q ss_pred cCCccccCccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCcceeec
Q 005768 190 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 269 (678)
Q Consensus 190 ~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~fg~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~l 269 (678)
.+|..+..||...+.+.|.|....++ .+++......-+++......
T Consensus 774 ~LP~sv~rGE~~~l~~~V~N~~~~~~-~v~V~l~~~~~~~~~~~~~~--------------------------------- 819 (1451)
T 4acq_A 774 TMPYSVIRGEAFTLKATVLNYLPKCI-RVSVQLEASPAFLAVPVEKE--------------------------------- 819 (1451)
T ss_dssp ECCSEEESSSCEEEEEEEEECSSSCE-EEEEEECCCTTEEEEESCSC---------------------------------
T ss_pred cCCceEecCCEEEEEEEEEeccCccE-EEEEEEEcCCCeEeecCCCC---------------------------------
Confidence 78999999999999999999986543 34454443322333221000
Q ss_pred CCCcccCCCCeEEEEEEEEeCCCCeEEEEEEEEe
Q 005768 270 PEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 303 (678)
Q Consensus 270 p~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 303 (678)
.....|++|+++++++.|++...|.+.+.+-...
T Consensus 820 ~~~v~l~~~~~~~v~f~v~p~~~G~~~i~v~a~~ 853 (1451)
T 4acq_A 820 QAPHCICANGRQTVSWAVTPKSLGNVNFTVSAEA 853 (1451)
T ss_dssp CCCEEECTTEEEEEEEEEEECSCEEEEEEEEEEE
T ss_pred ceEEEECCCCeEEEEEEEEECccceEEEEEEEEE
Confidence 0123678999999999999778899888887754
Done!