Query 005769
Match_columns 678
No_of_seqs 70 out of 72
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 13:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991 Nuclear transport rece 100.0 2.9E-77 6.4E-82 677.9 28.0 525 34-643 415-968 (1010)
2 COG5656 SXM1 Importin, protein 100.0 9.2E-37 2E-41 339.9 25.9 466 11-555 398-880 (970)
3 PF03378 CAS_CSE1: CAS/CSE pro 99.1 1.2E-09 2.6E-14 120.7 13.9 314 161-554 19-351 (435)
4 KOG2274 Predicted importin 9 [ 99.1 1.3E-07 2.9E-12 110.1 29.8 347 96-530 461-841 (1005)
5 KOG1993 Nuclear transport rece 98.9 2.3E-07 5.1E-12 107.0 25.6 380 82-555 483-890 (978)
6 KOG1991 Nuclear transport rece 97.9 3.4E-05 7.4E-10 91.3 9.9 183 160-362 539-761 (1010)
7 KOG2171 Karyopherin (importin) 97.8 0.0019 4.2E-08 78.0 20.7 168 30-214 342-522 (1075)
8 PF08506 Cse1: Cse1; InterPro 97.4 5.9E-05 1.3E-09 82.4 2.0 108 34-153 254-370 (370)
9 PF04931 DNA_pol_phi: DNA poly 96.7 0.0015 3.2E-08 77.6 4.6 59 96-160 105-168 (784)
10 PF10446 DUF2457: Protein of u 96.7 0.0011 2.5E-08 73.5 3.2 24 536-561 28-53 (458)
11 PF04931 DNA_pol_phi: DNA poly 96.2 0.009 2E-07 71.1 7.0 25 455-479 533-557 (784)
12 KOG1832 HIV-1 Vpr-binding prot 96.2 0.0028 6E-08 75.1 2.5 18 96-113 754-772 (1516)
13 PF13513 HEAT_EZ: HEAT-like re 95.9 0.0042 9.1E-08 49.1 1.8 52 99-156 1-55 (55)
14 PF01602 Adaptin_N: Adaptin N 95.4 0.059 1.3E-06 59.7 9.1 148 63-232 61-211 (526)
15 KOG1832 HIV-1 Vpr-binding prot 95.4 0.007 1.5E-07 71.8 1.9 12 186-197 723-734 (1516)
16 PF10508 Proteasom_PSMB: Prote 95.3 1.4 3E-05 50.4 19.6 326 31-421 28-369 (503)
17 KOG1241 Karyopherin (importin) 94.8 0.97 2.1E-05 53.9 16.8 165 34-217 365-555 (859)
18 PF10363 DUF2435: Protein of u 94.0 0.21 4.6E-06 44.9 7.2 81 122-213 2-86 (92)
19 PTZ00429 beta-adaptin; Provisi 93.9 0.28 6E-06 58.8 10.0 76 96-181 453-528 (746)
20 PF10446 DUF2457: Protein of u 93.5 0.042 9E-07 61.5 2.3 6 622-627 119-124 (458)
21 KOG1992 Nuclear export recepto 93.4 25 0.00054 43.0 24.4 433 34-556 405-875 (960)
22 KOG2171 Karyopherin (importin) 93.3 2.2 4.7E-05 52.8 16.3 139 96-247 48-191 (1075)
23 PF10508 Proteasom_PSMB: Prote 93.2 2.9 6.4E-05 47.7 16.4 376 64-522 21-418 (503)
24 PF12717 Cnd1: non-SMC mitotic 91.7 0.62 1.4E-05 45.7 7.6 107 99-213 2-110 (178)
25 PF09026 CENP-B_dimeris: Centr 91.5 0.081 1.7E-06 48.4 1.0 14 594-607 40-53 (101)
26 KOG2023 Nuclear transport rece 91.1 0.24 5.3E-06 58.1 4.6 106 95-210 444-558 (885)
27 PRK09687 putative lyase; Provi 91.0 3 6.6E-05 44.2 12.4 53 96-156 65-118 (280)
28 KOG0943 Predicted ubiquitin-pr 90.6 0.14 3.1E-06 62.8 2.2 13 434-446 1528-1540(3015)
29 KOG1999 RNA polymerase II tran 88.8 0.18 3.9E-06 60.9 1.3 14 656-669 124-137 (1024)
30 PF09026 CENP-B_dimeris: Centr 87.8 0.35 7.7E-06 44.3 2.2 13 595-607 48-60 (101)
31 KOG1824 TATA-binding protein-i 87.5 80 0.0017 39.6 21.6 390 96-520 185-716 (1233)
32 PTZ00429 beta-adaptin; Provisi 87.2 81 0.0018 38.5 27.0 94 61-160 103-210 (746)
33 PF13646 HEAT_2: HEAT repeats; 85.7 0.87 1.9E-05 38.2 3.4 48 96-156 11-58 (88)
34 PF06524 NOA36: NOA36 protein; 84.7 0.53 1.2E-05 49.9 1.9 6 476-481 165-170 (314)
35 PF12755 Vac14_Fab1_bd: Vacuol 83.3 1.6 3.4E-05 39.6 4.2 84 57-149 2-88 (97)
36 KOG2160 Armadillo/beta-catenin 82.9 0.85 1.8E-05 50.1 2.6 62 95-161 134-199 (342)
37 cd00020 ARM Armadillo/beta-cat 82.0 0.79 1.7E-05 39.7 1.6 59 96-160 18-80 (120)
38 cd00020 ARM Armadillo/beta-cat 81.3 0.58 1.2E-05 40.6 0.5 87 58-157 24-119 (120)
39 PF12348 CLASP_N: CLASP N term 81.3 8.8 0.00019 38.2 9.0 138 100-251 68-213 (228)
40 PF02985 HEAT: HEAT repeat; I 80.4 1.7 3.8E-05 31.0 2.7 30 125-160 2-31 (31)
41 PF08623 TIP120: TATA-binding 79.7 9.2 0.0002 38.4 8.4 100 143-245 41-141 (169)
42 PF11705 RNA_pol_3_Rpc31: DNA- 79.4 0.95 2.1E-05 46.7 1.5 13 604-616 211-223 (233)
43 PF13646 HEAT_2: HEAT repeats; 78.9 4.5 9.7E-05 33.9 5.2 47 96-154 42-88 (88)
44 PRK09687 putative lyase; Provi 78.4 3.6 7.8E-05 43.7 5.4 18 95-112 101-118 (280)
45 PF05327 RRN3: RNA polymerase 78.4 79 0.0017 37.0 16.7 130 403-552 65-215 (563)
46 KOG0943 Predicted ubiquitin-pr 77.8 1.2 2.6E-05 55.2 1.8 16 166-181 1197-1212(3015)
47 PF04147 Nop14: Nop14-like fam 77.4 1.8 3.9E-05 52.7 3.2 8 305-312 184-191 (840)
48 PF01602 Adaptin_N: Adaptin N 76.1 4.3 9.3E-05 45.1 5.5 89 60-156 76-179 (526)
49 KOG1241 Karyopherin (importin) 76.0 10 0.00022 45.8 8.6 154 28-197 592-757 (859)
50 PF13513 HEAT_EZ: HEAT-like re 75.4 2.8 6.2E-05 33.0 2.8 47 59-112 5-55 (55)
51 PF03153 TFIIA: Transcription 72.7 0.47 1E-05 51.7 -3.0 18 634-651 329-346 (375)
52 KOG1999 RNA polymerase II tran 72.0 1.7 3.6E-05 53.1 1.1 14 655-669 120-133 (1024)
53 PF13324 GCIP: Grap2 and cycli 69.3 7.2 0.00016 41.1 5.0 8 525-532 113-120 (275)
54 PHA02608 67 prohead core prote 69.0 9.4 0.0002 34.0 4.7 15 534-548 14-28 (80)
55 PTZ00415 transmission-blocking 67.7 2.9 6.3E-05 53.8 1.9 18 638-655 219-236 (2849)
56 PF12717 Cnd1: non-SMC mitotic 67.3 32 0.0007 33.7 8.8 103 64-179 8-112 (178)
57 PF09073 BUD22: BUD22; InterP 67.2 18 0.00039 40.9 7.8 29 517-550 116-144 (432)
58 PF04889 Cwf_Cwc_15: Cwf15/Cwc 64.8 5.6 0.00012 41.9 3.1 18 585-602 140-157 (244)
59 KOG3130 Uncharacterized conser 64.5 4.5 9.7E-05 45.5 2.3 18 235-252 11-28 (514)
60 KOG2023 Nuclear transport rece 64.5 1.7E+02 0.0037 35.6 15.0 95 312-411 772-868 (885)
61 COG5215 KAP95 Karyopherin (imp 63.4 1.1E+02 0.0025 36.5 13.1 92 64-162 431-533 (858)
62 PF03115 Astro_capsid: Astrovi 62.4 2.5 5.4E-05 51.1 0.0 8 222-229 338-345 (787)
63 KOG1189 Global transcriptional 62.2 7.1 0.00015 47.0 3.5 34 309-343 549-582 (960)
64 KOG0262 RNA polymerase I, larg 61.8 9.7 0.00021 48.1 4.6 29 456-484 1137-1165(1640)
65 KOG1059 Vesicle coat complex A 61.5 18 0.00039 43.6 6.6 123 57-195 122-244 (877)
66 COG5657 CSE1 CAS/CSE protein i 61.5 4.2E+02 0.0092 33.3 19.2 331 143-555 507-859 (947)
67 PF04147 Nop14: Nop14-like fam 61.1 4 8.7E-05 49.7 1.4 10 639-648 446-455 (840)
68 KOG2038 CAATT-binding transcri 60.4 6 0.00013 47.7 2.6 58 120-181 297-354 (988)
69 KOG2051 Nonsense-mediated mRNA 59.8 7.9 0.00017 48.0 3.4 18 637-654 970-987 (1128)
70 PF03344 Daxx: Daxx Family; I 59.7 3 6.5E-05 50.0 0.0 11 387-397 278-288 (713)
71 COG5215 KAP95 Karyopherin (imp 59.4 35 0.00076 40.5 8.2 138 57-206 382-539 (858)
72 KOG3130 Uncharacterized conser 59.2 5.9 0.00013 44.6 2.1 15 271-285 26-40 (514)
73 KOG1189 Global transcriptional 59.0 6.4 0.00014 47.3 2.5 11 12-22 71-81 (960)
74 KOG1059 Vesicle coat complex A 58.5 21 0.00045 43.1 6.4 34 100-139 476-509 (877)
75 KOG3064 RNA-binding nuclear pr 57.9 18 0.00039 38.8 5.3 39 509-547 149-193 (303)
76 PRK13800 putative oxidoreducta 56.7 11 0.00024 46.2 4.1 48 96-156 818-865 (897)
77 KOG0127 Nucleolar protein fibr 56.6 7.6 0.00017 45.2 2.5 16 504-519 161-176 (678)
78 PF04281 Tom22: Mitochondrial 56.4 5.7 0.00012 38.7 1.3 11 592-602 49-59 (137)
79 KOG0166 Karyopherin (importin) 56.2 6.6 0.00014 45.5 2.0 77 79-161 313-396 (514)
80 PF12755 Vac14_Fab1_bd: Vacuol 55.9 20 0.00042 32.6 4.6 64 123-192 27-96 (97)
81 PF06213 CobT: Cobalamin biosy 53.4 49 0.0011 35.2 7.8 16 515-531 145-160 (282)
82 KOG0291 WD40-repeat-containing 53.0 36 0.00079 41.3 7.2 38 485-525 796-833 (893)
83 PF05285 SDA1: SDA1; InterPro 53.0 15 0.00033 40.1 3.9 6 545-550 72-77 (324)
84 PRK14703 glutaminyl-tRNA synth 52.7 69 0.0015 39.3 9.7 115 102-237 638-767 (771)
85 KOG0567 HEAT repeat-containing 51.5 37 0.0008 36.8 6.4 50 96-156 198-247 (289)
86 KOG0262 RNA polymerase I, larg 51.0 25 0.00054 44.7 5.6 48 431-478 1162-1214(1640)
87 KOG2141 Protein involved in hi 50.4 11 0.00024 45.3 2.5 6 509-514 151-156 (822)
88 KOG4535 HEAT and armadillo rep 49.9 33 0.00071 40.0 6.0 89 60-154 503-599 (728)
89 TIGR02270 conserved hypothetic 49.5 70 0.0015 36.2 8.6 53 89-156 153-205 (410)
90 PF05764 YL1: YL1 nuclear prot 48.3 44 0.00096 35.0 6.4 12 537-548 11-22 (240)
91 PF04871 Uso1_p115_C: Uso1 / p 47.7 29 0.00062 33.6 4.5 20 539-558 92-111 (136)
92 KOG1517 Guanine nucleotide bin 47.3 26 0.00057 44.0 5.0 61 97-163 612-676 (1387)
93 PF02724 CDC45: CDC45-like pro 46.0 15 0.00033 43.4 2.9 21 401-421 7-27 (622)
94 PF07093 SGT1: SGT1 protein; 45.3 41 0.00088 39.6 6.2 14 469-482 393-406 (589)
95 KOG0213 Splicing factor 3b, su 44.7 2E+02 0.0044 35.6 11.4 148 153-310 718-910 (1172)
96 KOG2274 Predicted importin 9 [ 44.3 2.6E+02 0.0056 35.1 12.4 202 117-343 84-291 (1005)
97 PF08389 Xpo1: Exportin 1-like 42.8 26 0.00057 32.0 3.4 53 144-197 3-55 (148)
98 KOG0299 U3 snoRNP-associated p 42.6 17 0.00036 41.6 2.4 24 583-606 61-84 (479)
99 COG5406 Nucleosome binding fac 42.5 23 0.00051 42.2 3.5 16 535-550 899-914 (1001)
100 PF13324 GCIP: Grap2 and cycli 42.3 18 0.00039 38.2 2.4 21 537-557 129-149 (275)
101 KOG2025 Chromosome condensatio 41.8 1.6E+02 0.0035 36.1 10.1 122 86-245 88-212 (892)
102 PF05285 SDA1: SDA1; InterPro 40.7 15 0.00033 40.1 1.6 7 478-484 39-45 (324)
103 PF03153 TFIIA: Transcription 39.8 8.1 0.00018 42.3 -0.6 6 327-332 30-35 (375)
104 PRK13266 Thf1-like protein; Re 38.3 3.8E+02 0.0082 28.4 11.2 155 353-556 29-207 (225)
105 KOG4156 Claspin, protein media 37.9 65 0.0014 38.7 6.1 16 628-643 1082-1098(1329)
106 PF12348 CLASP_N: CLASP N term 37.4 1.9E+02 0.004 28.8 8.7 113 60-183 72-192 (228)
107 COG5406 Nucleosome binding fac 37.2 15 0.00033 43.6 1.1 20 309-329 595-614 (1001)
108 KOG2042 Ubiquitin fusion degra 36.5 1.5E+02 0.0033 37.2 9.1 214 206-446 568-807 (943)
109 KOG2076 RNA polymerase III tra 36.4 39 0.00084 41.6 4.2 14 628-641 101-114 (895)
110 COG5181 HSH155 U2 snRNP splice 36.3 2.2E+02 0.0048 34.6 10.0 131 153-297 523-697 (975)
111 KOG3779 Homeobox transcription 35.5 76 0.0016 36.7 6.0 22 579-600 290-311 (737)
112 PF04050 Upf2: Up-frameshift s 35.3 12 0.00027 37.0 0.0 9 636-644 70-78 (170)
113 PF03130 HEAT_PBS: PBS lyase H 35.1 62 0.0013 22.6 3.5 27 101-134 1-27 (27)
114 PF03344 Daxx: Daxx Family; I 34.5 13 0.00028 44.8 0.0 6 520-525 386-391 (713)
115 KOG2393 Transcription initiati 34.0 30 0.00065 40.4 2.7 17 485-501 189-205 (555)
116 PLN03060 inositol phosphatase- 33.6 4.3E+02 0.0094 27.7 10.7 156 353-557 27-198 (206)
117 KOG0166 Karyopherin (importin) 32.9 83 0.0018 36.9 6.0 103 95-204 162-274 (514)
118 KOG1824 TATA-binding protein-i 31.9 1.6E+02 0.0035 37.2 8.2 99 106-213 158-259 (1233)
119 KOG2652 RNA polymerase II tran 31.7 16 0.00034 40.5 -0.0 42 297-338 1-50 (348)
120 COG4229 Predicted enolase-phos 31.2 1.7E+02 0.0037 30.5 7.2 49 149-197 29-77 (229)
121 TIGR01651 CobT cobaltochelatas 31.2 55 0.0012 38.9 4.2 10 486-495 158-167 (600)
122 KOG2393 Transcription initiati 30.3 45 0.00098 39.0 3.3 30 434-468 176-205 (555)
123 KOG2652 RNA polymerase II tran 29.9 25 0.00055 38.9 1.2 20 631-650 298-318 (348)
124 PRK13800 putative oxidoreducta 29.8 59 0.0013 40.1 4.4 51 96-159 632-682 (897)
125 PF04889 Cwf_Cwc_15: Cwf15/Cwc 29.7 27 0.00058 37.0 1.3 11 658-668 232-242 (244)
126 PF14500 MMS19_N: Dos2-interac 29.5 4.1E+02 0.0088 28.3 10.0 141 96-247 10-156 (262)
127 KOG2051 Nonsense-mediated mRNA 29.3 14 0.00031 45.9 -0.9 12 388-399 580-591 (1128)
128 PF02637 GatB_Yqey: GatB domai 28.6 2.8E+02 0.0061 26.5 8.0 120 101-236 13-144 (148)
129 PF12054 DUF3535: Domain of un 28.0 89 0.0019 35.6 5.2 72 143-221 288-363 (441)
130 PF03896 TRAP_alpha: Transloco 27.6 87 0.0019 34.0 4.7 20 512-531 6-25 (285)
131 PF04546 Sigma70_ner: Sigma-70 26.8 40 0.00088 34.3 2.0 17 652-671 156-172 (211)
132 PRK04964 hypothetical protein; 26.7 1.3E+02 0.0028 26.1 4.6 54 106-161 5-63 (66)
133 COG5137 Histone chaperone invo 26.3 44 0.00095 35.3 2.1 8 415-422 94-101 (279)
134 TIGR02270 conserved hypothetic 26.0 1E+02 0.0023 34.8 5.2 58 86-159 120-177 (410)
135 COG4547 CobT Cobalamin biosynt 25.9 58 0.0013 37.8 3.2 6 647-652 336-341 (620)
136 KOG3241 Uncharacterized conser 25.4 38 0.00082 34.7 1.5 10 510-519 92-101 (227)
137 KOG3064 RNA-binding nuclear pr 25.3 66 0.0014 34.7 3.2 16 460-475 90-105 (303)
138 PF10521 DUF2454: Protein of u 25.2 2.4E+02 0.0052 30.0 7.5 91 67-160 99-205 (282)
139 KOG1242 Protein containing ada 25.2 2.5E+02 0.0054 33.5 8.1 107 120-242 213-322 (569)
140 PF07093 SGT1: SGT1 protein; 25.1 2.3E+02 0.005 33.5 8.0 23 585-608 470-492 (589)
141 COG1413 FOG: HEAT repeat [Ener 24.9 2.3E+02 0.005 30.0 7.3 52 96-160 85-137 (335)
142 PF09670 Cas_Cas02710: CRISPR- 24.5 3.4E+02 0.0074 30.3 8.8 180 329-527 167-377 (379)
143 KOG2321 WD40 repeat protein [G 24.5 78 0.0017 37.6 3.9 21 590-610 564-584 (703)
144 KOG1248 Uncharacterized conser 23.9 8.4E+02 0.018 31.7 12.5 245 51-329 626-893 (1176)
145 KOG1834 Calsyntenin [Extracell 23.8 45 0.00098 40.0 1.9 14 305-318 675-688 (952)
146 KOG0127 Nucleolar protein fibr 23.7 41 0.0009 39.5 1.5 7 585-591 238-244 (678)
147 PF10521 DUF2454: Protein of u 23.5 91 0.002 33.1 4.0 35 387-421 116-151 (282)
148 PLN02751 glutamyl-tRNA(Gln) am 23.2 4.2E+02 0.0092 31.5 9.5 51 184-236 484-537 (544)
149 PF06213 CobT: Cobalamin biosy 22.6 74 0.0016 33.9 3.1 10 486-495 167-176 (282)
150 KOG0699 Serine/threonine prote 22.5 43 0.00093 37.8 1.3 14 630-643 367-380 (542)
151 PHA03193 tegument protein VP11 22.5 5.6E+02 0.012 30.5 10.0 148 298-478 191-367 (594)
152 PF14911 MMS22L_C: S-phase gen 22.4 2.2E+02 0.0049 32.1 6.8 86 124-213 257-346 (373)
153 PF15387 DUF4611: Domain of un 22.1 1E+02 0.0022 28.6 3.4 16 539-554 27-42 (96)
154 KOG2038 CAATT-binding transcri 21.8 48 0.001 40.5 1.6 9 628-636 939-947 (988)
155 KOG1240 Protein kinase contain 21.8 7.4E+02 0.016 32.5 11.4 340 58-462 417-790 (1431)
156 smart00567 EZ_HEAT E-Z type HE 21.7 1.3E+02 0.0029 20.9 3.3 29 99-134 1-29 (30)
157 PF08101 DUF1708: Domain of un 21.4 3.6E+02 0.0077 31.0 8.2 142 162-334 4-164 (420)
158 PF11702 DUF3295: Protein of u 21.4 35 0.00076 39.7 0.4 15 431-445 164-178 (507)
159 PF04869 Uso1_p115_head: Uso1 21.3 97 0.0021 33.9 3.7 130 349-483 57-200 (312)
160 PF07387 Seadorna_VP7: Seadorn 21.1 79 0.0017 34.2 2.8 28 504-531 204-231 (308)
161 KOG1061 Vesicle coat complex A 20.4 2.2E+02 0.0047 34.9 6.5 74 97-181 436-510 (734)
162 PF02106 Fanconi_C: Fanconi an 20.1 1.5E+03 0.033 27.1 13.3 51 141-197 175-227 (559)
No 1
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-77 Score=677.93 Aligned_cols=525 Identities=20% Similarity=0.245 Sum_probs=449.7
Q ss_pred eccccccCCCCCCCCcchhhhhccchhhHhhHhhHHHHHHhhC--hHHHHHHHHhhcccCccccCcchhHHHhhHHHHhh
Q 005769 34 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGE 111 (678)
Q Consensus 34 v~~~ls~f~~p~~~~~~~s~~~~~y~GaL~a~G~L~~~Lk~~~--k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~ge 111 (678)
|+..|.+|...+. .-++.+.++|||+++|+|+++|.+.+ |.+++.|+++||||+|+ +++|||||||||++|+
T Consensus 415 ~~~Il~~~~~~~~----~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 415 IVDILTRYKEASP----PNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQ 488 (1010)
T ss_pred HHHHHHhhcccCC----CccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHH
Confidence 4566788888774 44577788899999999999999987 69999999999999999 9999999999999999
Q ss_pred hhc--cCCCCccHHHHHHHHHHHh-cccCCCCCcCcchhhhhHHHHHHHhcCCCCCC-hhhHHHHHHhhcCCccchhhHH
Q 005769 112 LAS--CLPEDISADVYSSLLKALQ-MLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-WYPLLQVIVGRIGYEDEENSIL 187 (678)
Q Consensus 112 la~--~l~e~~~~~~~~sll~al~-dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~-~~pLLq~i~~~i~~~d~e~~~L 187 (678)
|++ |.++++..++|+.++++|. |.+ +||||.||.||++||.|+...++ +.|.+ |.++
T Consensus 489 ~~~~df~d~~~l~~ale~t~~~l~~d~~------lPV~VeAalALq~fI~~~~~~~e~~~~hv-------------p~~m 549 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLSEALELTHNCLLNDNE------LPVRVEAALALQSFISNQEQADEKVSAHV-------------PPIM 549 (1010)
T ss_pred HHhccCCChHHHHHHHHHHHHHhccCCc------CchhhHHHHHHHHHHhcchhhhhhHhhhh-------------hHHH
Confidence 997 9999999999999999999 555 99999999999999999998844 99999 9999
Q ss_pred HHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhh
Q 005769 188 FELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQ 267 (678)
Q Consensus 188 ~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~ 267 (678)
..||++++|+++|++...+..||..|++++ +|++..+||++. .+|+|+.+.++++++.++++. ++|+||
T Consensus 550 q~lL~L~ne~End~Lt~vme~iV~~fseEl----sPfA~eL~q~La------~~F~k~l~~~~~~~~~~ddk~-iaA~Gi 618 (1010)
T KOG1991|consen 550 QELLKLSNEVENDDLTNVMEKIVCKFSEEL----SPFAVELCQNLA------ETFLKVLQTSEDEDESDDDKA-IAASGI 618 (1010)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHhh----chhHHHHHHHHH------HHHHHHHhccCCCCccchHHH-HHHHHH
Confidence 999999999999999999999999998888 999999999998 889999999888777777777 999999
Q ss_pred hHHHHHHHHHHHHhhcccC--CCCccccCCCC--cccccHHHHHH---HHHHHccccchhhhhhHHHHHHHHHHHHhhhh
Q 005769 268 AAIAKAFSALLQQAWLTHI--QPLECEVSAPP--SCIDDSSMLLR---SIILSVSERNVIEELKLSELLLVWADLIGDWH 340 (678)
Q Consensus 268 ~~~~~a~stlLq~aw~~P~--~~~E~~~~P~~--~~~~D~s~lle---~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~ 340 (678)
++|++|+|.++...|. .++|++++|++ .+.+|.+++|+ +|+.++|++...|++ +||.+|++++....
T Consensus 619 ---L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp---~mW~ll~li~e~~~ 692 (1010)
T KOG1991|consen 619 ---LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISP---IMWGLLELILEVFQ 692 (1010)
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCH---HHHHHHHHHHHHHh
Confidence 6999999999999994 99999999996 99999999999 777888999888999 99999999999999
Q ss_pred hhhhccccchhhhHhhh-hcccc--cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHh--cCccc-hhhhhhhHH
Q 005769 341 AWEETEDLSVFDCIKEI-VNLHS--KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAIL--QYPSA-TWRACSCVH 414 (678)
Q Consensus 341 ~Wee~ed~~~fD~i~e~-V~l~~--s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~--~~p~a-~~rACkl~h 414 (678)
.|. +||+.+| +++|| .||+..|.. +|. |++.++.+++++++ +..++ +..|||+++
T Consensus 693 ~~~-------~dyf~d~~~~l~N~vt~g~~~~~s--------~~~----y~~il~~i~~~~l~~e~~~D~d~~~a~kLle 753 (1010)
T KOG1991|consen 693 DDG-------IDYFTDMMPALHNYVTYGTPSLLS--------NPD----YLQILLEIIKKVLTSENGEDSDCESACKLLE 753 (1010)
T ss_pred hhh-------HHHHHHHHHHHhhheeeCchhhhc--------cch----HHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 999 9999999 88898 999998885 664 99999999999999 34444 888999999
Q ss_pred HHhhCCCCCcccchhhhhhHHHHHHHHHhhhhhccCCCCCchhH-HHHHHhhhhccChHHHHHHHhhcCCC--chhhHHH
Q 005769 415 TLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKP-VVLAISSCYLCYPAVVEGILKKDEDG--GFALWGS 491 (678)
Q Consensus 415 ~lL~~~~~s~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~~l~Kp-LilvIssc~~ynP~lv~qiLek~~~~--~F~~W~s 491 (678)
.++++|+ |.+|++++.|+++|.+|+++. ++.+..|. +++||.||+||||.+++|+|++.+-+ .|++||+
T Consensus 754 ~iiL~~k------g~~dq~iplf~~~a~~~l~~~--~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~ 825 (1010)
T KOG1991|consen 754 VIILNCK------GLLDQYIPLFLELALSRLTRE--VETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQ 825 (1010)
T ss_pred HHHHHhc------CcHhhHhHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHH
Confidence 9999999 999999999999999999874 55566665 99999999999999999999999998 7999999
Q ss_pred HHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCCC---CCcchhhHHHHHHHHHHHhhhhhhccccCCCCccccc
Q 005769 492 ALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNP---GSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAE 568 (678)
Q Consensus 492 aLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~~---~~~~l~~c~~slle~~~~lke~~ee~~~d~~~D~e~~ 568 (678)
.+.+.++ +|+||||||||+++| +++.. +...+++.+.++++++..||+.-.+..+.+++|++++
T Consensus 826 ~~~~~~~---------~HDkKlcvL~l~tli----~l~~~~~~~~e~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~~~e~ 892 (1010)
T KOG1991|consen 826 FINQFKK---------VHDKKLCVLGLLTLI----SLGQDPQLPSEVLGQLGPALVELLLSLPEALAERAQVEEEDSEEG 892 (1010)
T ss_pred HHHHHHh---------hhhHHHHHHHHHHHH----hccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999433 999999999999888 55433 5468899999999999999999998887765554444
Q ss_pred CcCCCCCCCCCCCCCCCccCcccchHHHHHHHHHHHhhhhcCcccCCCCCc---ccchhccc-cCccccchhhHHHHhh
Q 005769 569 DKEDDNEESEDDDEDSEGDECEETEEEFLERYAKAAVNLENNTLVEEGDVE---DQEHDIEL-GSLDEVDQLKVVASSI 643 (678)
Q Consensus 569 ~~~dddeD~dddd~~~ddde~eE~e~e~Ler~a~~A~~le~g~~~ee~~~d---D~~~d~el-~~LdevD~~~~Vls~~ 643 (678)
+.++++++++- .+|+||.++++.+|.++|+..+..-+...+++||.|+ |+++|+.| ++||.||+++.+-+.+
T Consensus 893 ~~~~~~~~e~~---~~d~dD~d~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i 968 (1010)
T KOG1991|consen 893 EEEDDDEEEDF---IDDEDDIDEDDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDPFQLFKEAI 968 (1010)
T ss_pred cCCCCcchhhc---cCccccccccchhHHHhhccccccccccccccccccchhccccccccccCcccccchHHHHHHHH
Confidence 44333222221 2244444556668888888777664433333333333 34567777 7999999998655554
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-37 Score=339.94 Aligned_cols=466 Identities=15% Similarity=0.160 Sum_probs=344.4
Q ss_pred cccccccccccCCCCCCCccceeeccccccCCCCCCCCcchhhhhccchhhHhhHhhHHHHHHhhC--hHHHHHHHHhhc
Q 005769 11 SSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK--SEFTANLVRSRV 88 (678)
Q Consensus 11 ~~krkkg~~~~~~~~~~~~g~~lv~~~ls~f~~p~~~~~~~s~~~~~y~GaL~a~G~L~~~Lk~~~--k~~~~~l~~~rV 88 (678)
.+||||- +-+| +++|++.-=.-++.+++.-++.+..+|+|...+++.+|+.+.+ ....+.++++||
T Consensus 398 ~sKrke~---------Tfqg---iLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv 465 (970)
T COG5656 398 KSKRKEE---------TFQG---ILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHV 465 (970)
T ss_pred hcccchh---------hhhh---HHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 5666664 4566 6787664443344444555677778899999999999988876 567788899999
Q ss_pred ccCccccCcchhHHHhhHHHHhhhhc-cCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChh
Q 005769 89 LPLYSVSVCLPYLVASANWILGELAS-CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWY 167 (678)
Q Consensus 89 ~P~~~~~~~sp~LrA~A~Wv~gela~-~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~ 167 (678)
.|.|. ++++||++|||-.+..|.- |.+...-.++|..++++|.+ + .||||+.||-||+.||.|.+..+.+.
T Consensus 466 ~P~f~--s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~n-n-----~lpv~ieAalAlq~fi~~~q~h~k~s 537 (970)
T COG5656 466 IPAFR--SNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKN-N-----HLPVMIEAALALQFFIFNEQSHEKFS 537 (970)
T ss_pred hHhhc--CcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc-C-----CcchhhhHHHHHHHHHhchhhhHHHH
Confidence 99999 9999999999999999964 88877788999999999999 3 59999999999999999999887766
Q ss_pred hHHHHHHhhcCCccchhhHHHHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhh
Q 005769 168 PLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 247 (678)
Q Consensus 168 pLLq~i~~~i~~~d~e~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~ 247 (678)
... |-.+..||++-++.+.|-+.-.++.+|+.|.+++ +||+..+--.+.+-|=++ +|..-
T Consensus 538 ahV-------------p~tmekLLsLSn~feiD~LS~vMe~fVe~fseEL----spfa~eLa~~Lv~qFlki---aq~l~ 597 (970)
T COG5656 538 AHV-------------PETMEKLLSLSNTFEIDPLSMVMESFVEYFSEEL----SPFAPELAGSLVRQFLKI---AQSLL 597 (970)
T ss_pred hhh-------------hHHHHHHHHhcccccchHHHHHHHHHHHHhHHhh----chhHHHHHHHHHHHHHHH---HHHHH
Confidence 555 5555555555555555555555566666665555 666544443333323222 23222
Q ss_pred hhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccC--CCCccccCCCC--cccccHHHHHHHHHHHccccchhhhh
Q 005769 248 NFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHI--QPLECEVSAPP--SCIDDSSMLLRSIILSVSERNVIEEL 323 (678)
Q Consensus 248 ~~~~de~~d~~~~~~~a~G~~~~~~a~stlLq~aw~~P~--~~~E~~~~P~~--~~~~D~s~lle~il~~~t~~~~~~~~ 323 (678)
+..+|-..-.+.+.++|+|- ++|+.|++-+..-+|. -.+|..+.|+. .+.++.+++|.|++..+..++.. ++
T Consensus 598 ens~d~~s~vDDKqmaasGi---L~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~-sk 673 (970)
T COG5656 598 ENSSDTSSVVDDKQMAASGI---LRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFM-SK 673 (970)
T ss_pred cCCccccccccHHHHHHHHH---HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HH
Confidence 22232222222345899998 6999999999999994 78889999985 77899999999888888888877 56
Q ss_pred hHHHHH-HHHHHHHhhhhhhhhccccchhhhHhhh-hcccc--cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHH
Q 005769 324 KLSELL-LVWADLIGDWHAWEETEDLSVFDCIKEI-VNLHS--KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAI 399 (678)
Q Consensus 324 kis~L~-~vwa~~ia~w~~Wee~ed~~~fD~i~e~-V~l~~--s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai 399 (678)
-|++.+ .+|.++...-.. ++ ++ +|.+++ ..++| -||-..|-. .|. |..-++.+++.++
T Consensus 674 eI~pimwgi~Ell~~~l~~----~~-t~-~y~ee~~~al~nfityG~~ef~~--------~~~----y~~i~~eI~~~~l 735 (970)
T COG5656 674 EIEPIMWGIFELLLNLLID----EI-TA-VYSEEVADALDNFITYGKTEFMD--------AGI----YGSICSEISKLCL 735 (970)
T ss_pred HhhhhhhHHHHHHHhcccc----cc-hh-hhHHHHHHHHHHHHHhCcccccc--------ccc----hhHHHHHHHHHHH
Confidence 666655 444443333322 22 23 999999 77777 888666654 443 8888999999888
Q ss_pred h-cCc--cchhhhhhhHHHHhhCCCCCcccch-hhhhhHHHHHHHHHhhhhhccCCCCCchhHHHHHHhhhhccChHHHH
Q 005769 400 L-QYP--SATWRACSCVHTLLHVPKYSFETEG-VKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVE 475 (678)
Q Consensus 400 ~-~~p--~a~~rACkl~h~lL~~~~~s~~~eg-~~d~~i~~f~~aA~~rl~~~~s~~~~l~KpLilvIssc~~ynP~lv~ 475 (678)
. .-. .+..-+|++++.++.+-+ | .-++++|-|+.+|-+-++.+...+ +.-++++++|.||+|++|-.++
T Consensus 736 ~sE~n~l~D~~~vc~i~e~l~Ln~r------d~Ll~qy~plfi~vags~l~~~dElg-~~sv~aleliinnli~~P~eTL 808 (970)
T COG5656 736 CSEENFLEDFIGVCRIIESLILNIR------DELLSQYLPLFISVAGSGLKMIDELG-PASVYALELIINNLILRPKETL 808 (970)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHcc------chhHHhhhHHHHHHHhhhhhcccccc-chhhhHHHHHHHHHhcChHHHH
Confidence 8 222 558999999999999999 6 778899999999999998765544 6777899999999999999999
Q ss_pred HHHhhcCCC--chhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHhhhh
Q 005769 476 GILKKDEDG--GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEV 553 (678)
Q Consensus 476 qiLek~~~~--~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~~~~~~l~~c~~slle~~~~lke~ 553 (678)
|+|+.++.+ .|+.||+-+ |.|+|.|+|||+|+++.++| ++...+..+...+++...-++.+...|.+.
T Consensus 809 qiLe~qg~l~~FF~~wf~~i---------pkfkrvhdkKLsvlaIltii-~l~~v~~~~e~lv~nLg~vlv~l~~sLPeA 878 (970)
T COG5656 809 QILEEQGYLQSFFEKWFSQI---------PKFKRVHDKKLSVLAILTII-RLQEVGALPELLVHNLGEVLVALVTSLPEA 878 (970)
T ss_pred HHHHHcCcHHHHHHHHHhcC---------cchhhhhhhHhHHHHHHHHH-HhcccccchhhhhhHHHHHHHHHHHhhHHH
Confidence 999999999 899999872 57888999999999999998 443333334334444444444444444444
Q ss_pred hh
Q 005769 554 QE 555 (678)
Q Consensus 554 ~e 555 (678)
..
T Consensus 879 ir 880 (970)
T COG5656 879 IR 880 (970)
T ss_pred HH
Confidence 44
No 3
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.07 E-value=1.2e-09 Score=120.72 Aligned_cols=314 Identities=17% Similarity=0.155 Sum_probs=185.2
Q ss_pred CCCCChhhHHHHHHhhcCC---ccchhhHHHHHHHHHHhhccccccccchHHHHHHH---HHHHhcCCCCCCChhHHHHH
Q 005769 161 YMPPEWYPLLQVIVGRIGY---EDEENSILFELLSSVVGAANENVADHIPYIVSSLV---AAISKHMHPSSEPWPQVVER 234 (678)
Q Consensus 161 ~~pp~~~pLLq~i~~~i~~---~d~e~~~L~qll~~~vE~g~E~va~~lp~iV~~~~---~~~~k~l~p~~~~~~Q~ve~ 234 (678)
..-|...+||+.+++.+.. .||| .+-.-+=-+.=+..|.+....+.++..|. ..++|+ |. .| +----
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENe--ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kN-Ps--nP--~FnHy 91 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENE--YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKN-PS--NP--RFNHY 91 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-H--HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS------H--HHHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccch--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC-CC--Cc--chhhh
Confidence 4458889999999999965 4455 55433333333445556555444444443 445555 11 32 22222
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCC--cccccHHHHHH---H
Q 005769 235 GFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPP--SCIDDSSMLLR---S 309 (678)
Q Consensus 235 g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~~~~~~a~stlLq~aw~~P~~~~E~~~~P~~--~~~~D~s~lle---~ 309 (678)
-||++++..+.--++.++ + +.++|..++|+. .+.+|..++.. .
T Consensus 92 lFEsi~~lir~~~~~~~~-----------~---------------------v~~~E~~L~P~f~~ILq~dV~EF~PYvfQ 139 (435)
T PF03378_consen 92 LFESIGALIRFVCEADPE-----------A---------------------VSQFEEALFPPFQEILQQDVQEFIPYVFQ 139 (435)
T ss_dssp HHHHHHHHHHHS-GGGHH-----------------------------------HHHHHHHHHHHHHHHTT-TTTHHHHHH
T ss_pred HHHHHHHHHHhccCCChh-----------H---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355665555543332221 0 123444444442 44556555555 5
Q ss_pred HHHHccccch--hhhhhHHHHHHHHHHHHhhhhhhhhccccchhhhHhhhhcccc---cccccceeeccCCCCCCCCCCc
Q 005769 310 IILSVSERNV--IEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHS---KYELKNFIVRQMPPPPAPPVPP 384 (678)
Q Consensus 310 il~~~t~~~~--~~~~kis~L~~vwa~~ia~w~~Wee~ed~~~fD~i~e~V~l~~---s~g~~~F~~~~~~~~~~~p~~~ 384 (678)
|++++...++ .++. ..+.+|+-++.. .-|+. -..|.-+|.+.. +.+...+ + +++
T Consensus 140 Ila~Lle~~~~~~~p~---~y~~L~~~Ll~p-~lWe~------~gniPalvrLL~a~i~k~~~~i-~-------~~~--- 198 (435)
T PF03378_consen 140 ILAQLLELRPSSPLPD---AYKQLFPPLLSP-ALWER------RGNIPALVRLLQAYIKKDPSFI-V-------ANN--- 198 (435)
T ss_dssp HHHHHHHHSS--S--T---TTGGGHHHHTSG-GGGGS------TTTHHHHHHHHHHHHHHHGGG------------S---
T ss_pred HHHHHHHcCCCCCCcH---HHHHHHHHHcCc-chhcc------CCCcCcHHHHHHHHHHhCchhh-c-------chh---
Confidence 6666665555 3344 667778888776 77872 334555555555 4555544 3 233
Q ss_pred hhHHhhHHHHHHHHHhcCccchhhhhhhHHHHhhCCCCCcccch-hhhhhHHHHHHHHHhhhhhccCCCCCchhHHHHHH
Q 005769 385 QSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEG-VKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAI 463 (678)
Q Consensus 385 ~s~ie~l~~fvs~ai~~~p~a~~rACkl~h~lL~~~~~s~~~eg-~~d~~i~~f~~aA~~rl~~~~s~~~~l~KpLilvI 463 (678)
.++.|.+++.+.|. .....--|-.+.++++..+. + ..+.++..+..+.+.||++ ++...+.|.++..+
T Consensus 199 --~l~~iLgvFQkLi~-sk~~D~~gF~LL~~iv~~~p------~~~l~~yl~~I~~lll~RLq~--skT~kf~~~fv~F~ 267 (435)
T PF03378_consen 199 --QLEPILGVFQKLIA-SKANDHYGFDLLESIVENLP------PEALEPYLKQIFTLLLTRLQS--SKTEKFVKRFVVFL 267 (435)
T ss_dssp ---CHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHS-------HHHHGGGHHHHHHHHHHHHHH--C--HHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHC-CCCcchHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 78999999999996 22233447789999988887 5 6899999999999999987 56667888866654
Q ss_pred h-hhhccChHHHHHHHhhcCCCchhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCCC-CCcchhhHHH
Q 005769 464 S-SCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNP-GSSLLQDCYA 541 (678)
Q Consensus 464 s-sc~~ynP~lv~qiLek~~~~~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~~-~~~~l~~c~~ 541 (678)
+ -|++|+|+...+.+++-..+.|..+...+=.-. .+.++..+|+|+|++|++|++ .-.+. ..+ ..+.+.
T Consensus 268 ~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~----~~k~~~~~erKi~~vGltkLL----~es~~~~~~-~~~~w~ 338 (435)
T PF03378_consen 268 SLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPD----LQKVSGPIERKICAVGLTKLL----CESPAFLSE-YSQLWP 338 (435)
T ss_dssp HHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHH----GGG--SHHHHHHHHHHHHHHH----HSSTTHHHH--CHHHH
T ss_pred HHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCc----hhhcCCcchhhHHHHHHHHHH----hccHhhhhH-HHHHHH
Confidence 4 357789999999999888887877777532211 124566899999999999776 32222 111 345666
Q ss_pred HHHHHHHHhhhhh
Q 005769 542 SLMEAAVQLKEVQ 554 (678)
Q Consensus 542 slle~~~~lke~~ 554 (678)
.++++++.+.+.-
T Consensus 339 ~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 339 PLLEALLKLLERP 351 (435)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC
Confidence 6777777665543
No 4
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.05 E-value=1.3e-07 Score=110.06 Aligned_cols=347 Identities=18% Similarity=0.196 Sum_probs=205.7
Q ss_pred CcchhHHHhhHHHHhhhhccCC--CCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLP--EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVI 173 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~--e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i 173 (678)
.-+|+|..||-|.++.|+.-++ .++....++..+.++.+-. --|||++|.-|+++..--.--.|-.+-+|..+
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~-----~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDV-----PPPVKISAVRAFCGYCKVKVLLSLQPMILDGL 535 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC-----CCchhHHHHHHHHhccCceeccccchHHHHHH
Confidence 5678999999999999998433 3455566666677776655 48999999999998872111113333344444
Q ss_pred HhhcCCccch-hhHHHHHHHHHHhhccccccc---cc-hHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 005769 174 VGRIGYEDEE-NSILFELLSSVVGAANENVAD---HI-PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 248 (678)
Q Consensus 174 ~~~i~~~d~e-~~~L~qll~~~vE~g~E~va~---~l-p~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~ 248 (678)
...+....+| .-+|-+.|+.++-...|.-+. -| |.++..| +|.-- +| |++.+.-+-+-..-|..+.
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF----~k~s~---DP--~V~~~~qd~f~el~q~~~~ 606 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF----LKYSE---DP--QVASLAQDLFEELLQIAAN 606 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH----HHhcC---Cc--hHHHHHHHHHHHHHHHHHh
Confidence 4444333322 336688888888888877655 34 8888777 66555 54 7776665555555554444
Q ss_pred hhhhhhhccc--------cchhhhhh-hhHHHHHHHHHHHHhhcccCC-CCccccCCCC----cccccHHHHHH--HHHH
Q 005769 249 FLREEVELDQ--------SSGKWESG-QAAIAKAFSALLQQAWLTHIQ-PLECEVSAPP----SCIDDSSMLLR--SIIL 312 (678)
Q Consensus 249 ~~~de~~d~~--------~~~~~a~G-~~~~~~a~stlLq~aw~~P~~-~~E~~~~P~~----~~~~D~s~lle--~il~ 312 (678)
..|.-+.--+ ..+++-.| |...+-.+.|+++.... |++ .+-++.+|+. .-++|--++=. |++|
T Consensus 607 ~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~-pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 607 YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS-PLPNLLICYAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC-CccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence 4442222111 01122233 54445666667776654 453 3337777762 33444444333 9998
Q ss_pred HccccchhhhhhHHHHHHHHHHHHhhhhhhhhcccc--chhhhHhhhhcccccccccceeeccCCCCCCCCCCchhHHhh
Q 005769 313 SVSERNVIEELKLSELLLVWADLIGDWHAWEETEDL--SVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEG 390 (678)
Q Consensus 313 ~~t~~~~~~~~kis~L~~vwa~~ia~w~~Wee~ed~--~~fD~i~e~V~l~~s~g~~~F~~~~~~~~~~~p~~~~s~ie~ 390 (678)
+.-+.+.- ++. +||. |...- .+++..+-..++..+--+.-|
T Consensus 686 a~Is~~~e------q~~--------t~~~--e~g~~~~yImqV~sqLLdp~~sds~a~~--------------------- 728 (1005)
T KOG2274|consen 686 ALISVTLE------QLL--------TWHD--EPGHNLWYIMQVLSQLLDPETSDSAAAF--------------------- 728 (1005)
T ss_pred HHHhcCHH------HHH--------hhcc--CCCccHHHHHHHHHHHcCCccchhHHHH---------------------
Confidence 86555443 433 4555 21111 223333322333332221111
Q ss_pred HHHHHHHHHhcCccchhhhhhhHHHHhhCCCCCcccchhhhhhHHHHHHHHHhhhhhccCCCCC-chhHHHHHHhhhhcc
Q 005769 391 IGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSS-LWKPVVLAISSCYLC 469 (678)
Q Consensus 391 l~~fvs~ai~~~p~a~~rACkl~h~lL~~~~~s~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~~-l~KpLilvIssc~~y 469 (678)
+|-.|.+.| .|..+ -++..+-.+++|..+|+.. +++. +.--||.|.+.-.+-
T Consensus 729 VG~lV~tLi-----------------t~a~~-------el~~n~d~IL~Avisrmq~---ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 729 VGPLVLTLI-----------------THASS-------ELGPNLDQILRAVISRLQQ---AETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred HhHHHHHHH-----------------HHHHH-------HhchhHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHhhC
Confidence 112222222 22222 3344455677777888876 3333 555699999999999
Q ss_pred ChHHHHHHHhh-cCCC-------chhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCC
Q 005769 470 YPAVVEGILKK-DEDG-------GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGN 530 (678)
Q Consensus 470 nP~lv~qiLek-~~~~-------~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~ 530 (678)
+++.+...|.. .+-+ .-+.|.+.- |.|.-++|-||.++.++|++.++++..+
T Consensus 782 ~~~~~l~FL~Slp~~~g~~AlefVMteW~srq---------hl~~g~ye~kv~i~alc~al~~~~~~dd 841 (1005)
T KOG2274|consen 782 DLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQ---------HLYFGEYEGKVSIKALCKALQHLISTDD 841 (1005)
T ss_pred CHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhh---------hhhhhhhhchhhHHHHHHHHHhhhccCC
Confidence 99999999998 3333 367787765 4566699999999999999999998443
No 5
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.3e-07 Score=107.02 Aligned_cols=380 Identities=17% Similarity=0.213 Sum_probs=242.4
Q ss_pred HHHHhhcccCccccCcch-hHHHhhHHHHhhhhc-cCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 82 NLVRSRVLPLYSVSVCLP-YLVASANWILGELAS-CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 82 ~l~~~rV~P~~~~~~~sp-~LrA~A~Wv~gela~-~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
..+.+..+|+.+.+...- -+|-|-.|++||-.+ =.+.+....+|.+.+..|.|.+ |+|||..+|-+++-.|+.
T Consensus 483 ~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~-----D~vV~Ltt~~tlkl~vDD 557 (978)
T KOG1993|consen 483 KWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQN-----DLVVRLTTARTLKLVVDD 557 (978)
T ss_pred HHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccc-----cceeehHHHHHHHHhhhh
Confidence 345566778777433322 899999999999998 3345678889999999999998 799999999999999986
Q ss_pred CC-CCCChhhHHHHHHhhcCCccchhhHH---HHHHHHHHhhccccc-cccchHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 005769 160 DY-MPPEWYPLLQVIVGRIGYEDEENSIL---FELLSSVVGAANENV-ADHIPYIVSSLVAAISKHMHPSSEPWPQVVER 234 (678)
Q Consensus 160 ~~-~pp~~~pLLq~i~~~i~~~d~e~~~L---~qll~~~vE~g~E~v-a~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~ 234 (678)
-- -+..+.|+| +.+. +++|+.+-|.+---. ...|-++++...+ +++|++...-|.+-
T Consensus 558 ~nF~~dsFlp~l-------------enlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e----~I~P~~~~ivq~lp- 619 (978)
T KOG1993|consen 558 WNFSEDSFLPYL-------------ENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE----HIAPYASTIVQYLP- 619 (978)
T ss_pred ccCChhhhhhhH-------------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHH-
Confidence 55 346677777 4433 444444444322111 1122444444444 44766665555543
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccC---------CCCcc-ccCCC-CcccccH
Q 005769 235 GFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHI---------QPLEC-EVSAP-PSCIDDS 303 (678)
Q Consensus 235 g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~~~~~~a~stlLq~aw~~P~---------~~~E~-~~~P~-~~~~~D~ 303 (678)
+.|+.+.. . ...-| +|+.|+-.+.+++-..++ .++.. .-.|. .-+..||
T Consensus 620 ---------~LWe~s~~--------e--~lLr~-alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDg 679 (978)
T KOG1993|consen 620 ---------LLWEESEE--------E--PLLRC-ALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDG 679 (978)
T ss_pred ---------HHHhhhcc--------C--cHHHH-HHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhH
Confidence 56766653 1 22334 577888888888777664 12222 22233 3788999
Q ss_pred HHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhhhccccc-hhhhHhhhhcccccccccceeeccCCCCCCCCC
Q 005769 304 SMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLS-VFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPV 382 (678)
Q Consensus 304 s~lle~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~~Wee~ed~~-~fD~i~e~V~l~~s~g~~~F~~~~~~~~~~~p~ 382 (678)
.+|..-.+.+.+-+++ +++.+.|-|..--.- .+|.+. ++.-|+.++=++|- .|+
T Consensus 680 meLW~~~L~n~~~l~p-------~ll~L~p~l~~~iE~--ste~L~t~l~Ii~sYilLd~~----~fl------------ 734 (978)
T KOG1993|consen 680 MELWLTTLMNSQKLTP-------ELLLLFPHLLYIIEQ--STENLPTVLMIISSYILLDNT----VFL------------ 734 (978)
T ss_pred HHHHHHHHhcccccCH-------HHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHhhccH----HHH------------
Confidence 9998877777655544 466666666543322 212211 22333333333321 133
Q ss_pred CchhHHhhHHHHHHHHHhcCccc-hhhhhhhHHHHhhCCCCCcccchhhhhhHHHHHHHHHhhhhhccCCCCCchhH-HH
Q 005769 383 PPQSIIEGIGAFLSEAILQYPSA-TWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKP-VV 460 (678)
Q Consensus 383 ~~~s~ie~l~~fvs~ai~~~p~a-~~rACkl~h~lL~~~~~s~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~~l~Kp-Li 460 (678)
..|-++++.-+.+..+..... ...-||.++.++..-- ---..+..|.+-..|.-+- ...+-|+.-- -+
T Consensus 735 --~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~------il~~~~~~~~L~~lf~~I~--~~~~yP~~~~~yl 804 (978)
T KOG1993|consen 735 --NDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP------ILGSLLFSPLLSRLFLSIA--ENDKYPYVMGEYL 804 (978)
T ss_pred --HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH------HHHhhhcchhhHHHHHHHH--hCCCCchhHHHHH
Confidence 248888888888888866666 7778999999987653 1111233333333333331 1244454444 88
Q ss_pred HHHhhhhccChHHHHHHHhhcCCC------chhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCCCCCc
Q 005769 461 LAISSCYLCYPAVVEGILKKDEDG------GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSS 534 (678)
Q Consensus 461 lvIssc~~ynP~lv~qiLek~~~~------~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~~~~~ 534 (678)
+||+--.+-||+....+++..+.- ....|-.+...+ +. -..+||.+|||++++ .++..
T Consensus 805 ~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I----~~-----~k~rKl~~LalsSll-------~t~~~ 868 (978)
T KOG1993|consen 805 LVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHI----NH-----PKDRKLNTLALSSLL-------RTNNP 868 (978)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccC----CC-----HHHhhHHHHHHHHHh-------ccCCc
Confidence 999999999999999999977732 578888876664 22 478999999999776 34335
Q ss_pred chhhHHHHHHHHHHH-hhhhhh
Q 005769 535 LLQDCYASLMEAAVQ-LKEVQE 555 (678)
Q Consensus 535 ~l~~c~~slle~~~~-lke~~e 555 (678)
.+..-|.++|.+... +.|++|
T Consensus 869 ~ila~~~~I~nl~~e~L~eV~e 890 (978)
T KOG1993|consen 869 DILAVLDSIMNLWFEVLSEVME 890 (978)
T ss_pred HHHHHHhHHHHHHHHHHHHHhh
Confidence 677888888888775 566663
No 6
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=3.4e-05 Score=91.34 Aligned_cols=183 Identities=13% Similarity=0.145 Sum_probs=102.2
Q ss_pred CCCCCChhhHHHHHHhhcCCccchhhHHHHHHHHHHhhccccccccc-hHHHHHHHHHHHhcCCCCCCChhHHHHH----
Q 005769 160 DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHI-PYIVSSLVAAISKHMHPSSEPWPQVVER---- 234 (678)
Q Consensus 160 ~~~pp~~~pLLq~i~~~i~~~d~e~~~L~qll~~~vE~g~E~va~~l-p~iV~~~~~~~~k~l~p~~~~~~Q~ve~---- 234 (678)
.|..+-++|++|.+++++++-|+| .|-..+.+||+. +..+| |+.+ ++++||+ .++.|++.+
T Consensus 539 e~~~~hvp~~mq~lL~L~ne~End--~Lt~vme~iV~~----fseElsPfA~-----eL~q~La---~~F~k~l~~~~~~ 604 (1010)
T KOG1991|consen 539 EKVSAHVPPIMQELLKLSNEVEND--DLTNVMEKIVCK----FSEELSPFAV-----ELCQNLA---ETFLKVLQTSEDE 604 (1010)
T ss_pred hhHhhhhhHHHHHHHHHHHhcchh--HHHHHHHHHHHH----HHHhhchhHH-----HHHHHHH---HHHHHHHhccCCC
Confidence 446678999999999999999988 999999999999 77777 6655 4477777 778887753
Q ss_pred ----HHHHHHHH--HHHhhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHh------------hcccCCCCccccCCC
Q 005769 235 ----GFAALALM--AQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQA------------WLTHIQPLECEVSAP 296 (678)
Q Consensus 235 ----g~~alaa~--~q~~~~~~~de~~d~~~~~~~a~G~~~~~~a~stlLq~a------------w~~P~~~~E~~~~P~ 296 (678)
-=-+++|| -++..+---.-++-.+ +-..--..+.+.++.+|+.= ..... +-..+.|+
T Consensus 605 ~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~---vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~--~~~~Isp~ 679 (1010)
T KOG1991|consen 605 DESDDDKAIAASGILRTISTILLSLENHPE---VLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF--LSKEISPI 679 (1010)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh--hhcccCHH
Confidence 01123333 2333322221111111 11111112245555555542 11111 11335555
Q ss_pred C---------cccccHHHHHHHHHH----HccccchhhhhhH---HHHHHHHHHHHhhhhhhhhccccchhhhHhhh-hc
Q 005769 297 P---------SCIDDSSMLLRSIIL----SVSERNVIEELKL---SELLLVWADLIGDWHAWEETEDLSVFDCIKEI-VN 359 (678)
Q Consensus 297 ~---------~~~~D~s~lle~il~----~~t~~~~~~~~ki---s~L~~vwa~~ia~w~~Wee~ed~~~fD~i~e~-V~ 359 (678)
| .+.+++.++|.++|- |+|+-+...-... +-||.+-..++.+=| -+-.+=.+|+..++.+ .+
T Consensus 680 mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~-~~D~d~~~a~kLle~iiL~ 758 (1010)
T KOG1991|consen 680 MWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSEN-GEDSDCESACKLLEVIILN 758 (1010)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHH
Confidence 3 788999999997775 5555555433333 344444444444432 2222334567777666 44
Q ss_pred ccc
Q 005769 360 LHS 362 (678)
Q Consensus 360 l~~ 362 (678)
..+
T Consensus 759 ~kg 761 (1010)
T KOG1991|consen 759 CKG 761 (1010)
T ss_pred hcC
Confidence 433
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0019 Score=78.02 Aligned_cols=168 Identities=19% Similarity=0.148 Sum_probs=109.8
Q ss_pred cceeeccccccCCCCCCCCcchhhhhccchhhHhhHhhHH----HHHHhhChHHHHHHHHhhcccCccccCcchhHHHhh
Q 005769 30 GELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQ----EFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASA 105 (678)
Q Consensus 30 g~~lv~~~ls~f~~p~~~~~~~s~~~~~y~GaL~a~G~L~----~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A 105 (678)
|..++-|++.-.+.-- +|.+.+.++.+|||+|+.. ++++.+=+ =+..+|+|.+. .|+|-+|..|
T Consensus 342 g~~v~p~~~~~l~~~l-----~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-----~Il~~Vl~~l~--DphprVr~AA 409 (1075)
T KOG2171|consen 342 GKQVLPPLFEALEAML-----QSTEWKERHAALLALSVIAEGCSDVMIGNLP-----KILPIVLNGLN--DPHPRVRYAA 409 (1075)
T ss_pred hhhehHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-----HHHHHHHhhcC--CCCHHHHHHH
Confidence 4554444444433322 4445666779999999886 55655311 15588999888 9999999999
Q ss_pred HHHHhhhhc-cCCCCccHHHHHHHHH-HHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC---CChhhHHHHHHhhcCCc
Q 005769 106 NWILGELAS-CLPEDISADVYSSLLK-ALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP---PEWYPLLQVIVGRIGYE 180 (678)
Q Consensus 106 ~Wv~gela~-~l~e~~~~~~~~sll~-al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p---p~~~pLLq~i~~~i~~~ 180 (678)
|-.+||++. |.| ...+-|++.+= +|..-. +.+--.=|...||.|+-+|.+.+-+. |=+.+|++..+.....-
T Consensus 410 ~naigQ~stdl~p--~iqk~~~e~l~~aL~~~l-d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 410 LNAIGQMSTDLQP--EIQKKHHERLPPALIALL-DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHHhhhhhhcH--HHHHHHHHhccHHHHHHh-cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998 877 56666666655 443333 33233557778999999999987654 44455555433333222
Q ss_pred cchhhHH----HHHHHHHHhhccccccccchHHHHHHH
Q 005769 181 DEENSIL----FELLSSVVGAANENVADHIPYIVSSLV 214 (678)
Q Consensus 181 d~e~~~L----~qll~~~vE~g~E~va~~lp~iV~~~~ 214 (678)
. +... .-.+.+++++..++|..+-+.++..+.
T Consensus 487 ~--~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~ 522 (1075)
T KOG2171|consen 487 S--KPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLK 522 (1075)
T ss_pred C--chhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 2 2222 445667777778888887777776663
No 8
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.42 E-value=5.9e-05 Score=82.39 Aligned_cols=108 Identities=25% Similarity=0.233 Sum_probs=83.2
Q ss_pred eccccccCCCCCCCCcchhhhhccchhhHhhHhhHHHHHHhhChH--------HHHHHHHhhcccCcc-ccCcchhHHHh
Q 005769 34 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSE--------FTANLVRSRVLPLYS-VSVCLPYLVAS 104 (678)
Q Consensus 34 v~~~ls~f~~p~~~~~~~s~~~~~y~GaL~a~G~L~~~Lk~~~k~--------~~~~l~~~rV~P~~~-~~~~sp~LrA~ 104 (678)
|..+|++|..-+ +.+.+.+.||+.++|+|+......+.+ -+..+..+||+|+++ -....|+|||+
T Consensus 254 i~~~l~~y~~~~------~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~ 327 (370)
T PF08506_consen 254 IQQLLQQYASNP------SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKAD 327 (370)
T ss_dssp HHHHHHHHHH-T------TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHH
T ss_pred HHHHHHHHhhCC------cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHH
Confidence 667778775532 235677899999999999776543211 357788899999988 34577899999
Q ss_pred hHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHH
Q 005769 105 ANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 153 (678)
Q Consensus 105 A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai 153 (678)
|||.+--|.+-+|.+....++..++..|..++ +.||.=||-||
T Consensus 328 aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~------~vv~tyAA~~i 370 (370)
T PF08506_consen 328 AIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSS------YVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-------HHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------cchhhhhhhhC
Confidence 99999999999999999999999999999999 99999999876
No 9
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=96.69 E-value=0.0015 Score=77.64 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=33.7
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccH-----HHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPEDISA-----DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~-----~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
...+|||.-+.|++-. |+.+..+. .+++.+.+.|.... +...|.-+.---++.....+.
T Consensus 105 ~~k~~l~e~~~~~l~~---~l~~~~~~~~~~~~l~~~l~~~L~~~~---~~~~~e~lai~l~~~~~~~~~ 168 (784)
T PF04931_consen 105 SKKSWLRESCGWVLVQ---ALKESWFEEPCWFTLWQVLEKLLSANK---LAKSPEGLAIWLAYQKFLTNE 168 (784)
T ss_pred hchHHHHHHHHHHHHH---HHHhcchhhhhHHHHHHHHHHHHhccc---cccCHHHHHHHHhhhhhcccc
Confidence 6788999999999865 44443333 33444555555533 223565444445555555543
No 10
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=96.67 E-value=0.0011 Score=73.47 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHH-h-hhhhhccccCC
Q 005769 536 LQDCYASLMEAAVQ-L-KEVQEDEENDE 561 (678)
Q Consensus 536 l~~c~~slle~~~~-l-ke~~ee~~~d~ 561 (678)
+++|++- |..++ | +|..+|+..|+
T Consensus 28 i~DtlkK--E~~IRkLgeEaEEEA~~EE 53 (458)
T PF10446_consen 28 INDTLKK--ENAIRKLGEEAEEEAEEEE 53 (458)
T ss_pred HHHHHHH--HHHHhhhhHHHHHHHhhcc
Confidence 4555543 33332 3 45555444443
No 11
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=96.18 E-value=0.009 Score=71.13 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=17.9
Q ss_pred chhHHHHHHhhhhccChHHHHHHHh
Q 005769 455 LWKPVVLAISSCYLCYPAVVEGILK 479 (678)
Q Consensus 455 l~KpLilvIssc~~ynP~lv~qiLe 479 (678)
.+.-|+.+++--+|..|..+-.+|+
T Consensus 533 ~f~~L~~~~~lq~~~~~~~~~~~l~ 557 (784)
T PF04931_consen 533 AFELLLSLVLLQLYNGPEEAVDVLD 557 (784)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHH
Confidence 3455777778888888888766655
No 12
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=0.0028 Score=75.08 Aligned_cols=18 Identities=28% Similarity=0.088 Sum_probs=10.2
Q ss_pred Ccch-hHHHhhHHHHhhhh
Q 005769 96 VCLP-YLVASANWILGELA 113 (678)
Q Consensus 96 ~~sp-~LrA~A~Wv~gela 113 (678)
...+ -+||.||=++=-||
T Consensus 754 ~t~aD~IRalAc~~L~GLa 772 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLA 772 (1516)
T ss_pred CCcHHHHHHHHHHHHhccc
Confidence 3444 66666666654444
No 13
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.92 E-value=0.0042 Score=49.13 Aligned_cols=52 Identities=38% Similarity=0.463 Sum_probs=38.3
Q ss_pred hhHHHhhHHHHhhhhccCCCC---ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHH
Q 005769 99 PYLVASANWILGELASCLPED---ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 99 p~LrA~A~Wv~gela~~l~e~---~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
|.+|..|+|.+|+++...++. ....++..++..|.|++ -.||..|+.||+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~------~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD------DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS------HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHhcC
Confidence 578999999999988655443 33455566666666655 49999999999864
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.43 E-value=0.059 Score=59.67 Aligned_cols=148 Identities=20% Similarity=0.268 Sum_probs=108.9
Q ss_pred hhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCc
Q 005769 63 MAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSC 142 (678)
Q Consensus 63 ~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~ 142 (678)
++|-+++.++.+ .+ .+..|+.+.+.-.+. .+.|++|+.|--.++.+. ..++...+...+.+.|.+++
T Consensus 61 l~yl~l~~~~~~-~~-~~~~l~~n~l~kdl~--~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~------ 127 (526)
T PF01602_consen 61 LGYLYLSLYLHE-DP-ELLILIINSLQKDLN--SPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPS------ 127 (526)
T ss_dssp HHHHHHHHHTTT-SH-HHHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSS------
T ss_pred HHHHHHHHHhhc-ch-hHHHHHHHHHHHhhc--CCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCc------
Confidence 456666666666 33 366677777777665 888999999998887665 56677889999999999998
Q ss_pred CcchhhhhHHHHHHHhcCCCCCChhh-HHHHHHhhcCCccchhhHHHHHHHHHHhh-cccccccc-chHHHHHHHHHHHh
Q 005769 143 YPVRASAAGAIVGLLENDYMPPEWYP-LLQVIVGRIGYEDEENSILFELLSSVVGA-ANENVADH-IPYIVSSLVAAISK 219 (678)
Q Consensus 143 lPVRvsAa~Ai~sLie~~~~pp~~~p-LLq~i~~~i~~~d~e~~~L~qll~~~vE~-g~E~va~~-lp~iV~~~~~~~~k 219 (678)
.-||-.|+.|+..+.+.+ |....+ +++.+...+.+.+ +......+..+.+. -+++.... +|..+..+..-+
T Consensus 128 ~~VRk~A~~~l~~i~~~~--p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l-- 201 (526)
T PF01602_consen 128 PYVRKKAALALLKIYRKD--PDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLL-- 201 (526)
T ss_dssp HHHHHHHHHHHHHHHHHC--HCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHhccC--HHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcc--
Confidence 699999999999999984 444444 6777788885555 77888888888888 44444333 377776663333
Q ss_pred cCCCCCCChhHHH
Q 005769 220 HMHPSSEPWPQVV 232 (678)
Q Consensus 220 ~l~p~~~~~~Q~v 232 (678)
+.+.||.|+.
T Consensus 202 ---~~~~~~~q~~ 211 (526)
T PF01602_consen 202 ---SDPDPWLQIK 211 (526)
T ss_dssp ---TCCSHHHHHH
T ss_pred ---cccchHHHHH
Confidence 6779999975
No 15
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=0.007 Score=71.83 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhh
Q 005769 186 ILFELLSSVVGA 197 (678)
Q Consensus 186 ~L~qll~~~vE~ 197 (678)
+|-|.+..|-|+
T Consensus 723 ~le~~l~~mw~~ 734 (1516)
T KOG1832|consen 723 KLEQVLRQMWEA 734 (1516)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.31 E-value=1.4 Score=50.38 Aligned_cols=326 Identities=15% Similarity=0.141 Sum_probs=167.1
Q ss_pred ceeeccccccCCCCCCCCcchhhhhccchhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHh
Q 005769 31 ELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILG 110 (678)
Q Consensus 31 ~~lv~~~ls~f~~p~~~~~~~s~~~~~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~g 110 (678)
++.+.+++++||.+--=++.+. .+..-+.+++-.|...|+......+..=++..+.-.+. .++|.+|.-|+|.+|
T Consensus 28 ~~~~~~~l~~~~~~~lf~~L~~---~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~--h~~~~Vr~l~l~~l~ 102 (503)
T PF10508_consen 28 ELSSSPFLERLPEPVLFDCLNT---SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLT--HPSPKVRRLALKQLG 102 (503)
T ss_pred HHhhhhHHHhchHHHHHHHHhh---cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 3456677777765441111111 12334666777777777776544432222222222222 678899999999999
Q ss_pred hhhcc----CCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCCh-h-hHHHHHHhhcCCccchh
Q 005769 111 ELASC----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW-Y-PLLQVIVGRIGYEDEEN 184 (678)
Q Consensus 111 ela~~----l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~-~-pLLq~i~~~i~~~d~e~ 184 (678)
.++.- ..--....+|..++.+|.+++ .-|.-.|+.+|..+..+......+ . .+++.+....+..++.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d------~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~- 175 (503)
T PF10508_consen 103 RIARHSEGAAQLLVDNELLPLIIQCLRDPD------LSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDI- 175 (503)
T ss_pred HHhcCCHHHHHHhcCccHHHHHHHHHcCCc------HHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHH-
Confidence 98752 222355669999999999999 889899999999998765443222 0 1144455555554432
Q ss_pred hHHHHHHHHHHhhcc--ccccccc--hHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 005769 185 SILFELLSSVVGAAN--ENVADHI--PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSS 260 (678)
Q Consensus 185 ~~L~qll~~~vE~g~--E~va~~l--p~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~ 260 (678)
+-.+.+.++++... ++....+ -.+++.+.+++ -- .+.+.|. .+++-+.-++.+=.. -.
T Consensus 176 -vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL----~~-dDiLvql--nalell~~La~~~~g----------~~ 237 (503)
T PF10508_consen 176 -VRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL----DS-DDILVQL--NALELLSELAETPHG----------LQ 237 (503)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh----cC-ccHHHHH--HHHHHHHHHHcChhH----------HH
Confidence 55777777777732 1122111 12444443333 33 4666653 223333434331111 11
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhh
Q 005769 261 GKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWH 340 (678)
Q Consensus 261 ~~~a~G~~~~~~a~stlLq~aw~~P~~~~E~~~~P~~~~~~D~s~lle~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~ 340 (678)
-+...|. .+.++.+|+....-| ..-...+|-.+ ..|..+.. .-+. .....+|.++....
T Consensus 238 yL~~~gi---~~~L~~~l~~~~~dp--~~~~~~l~g~~------~f~g~la~-------~~~~---~v~~~~p~~~~~l~ 296 (503)
T PF10508_consen 238 YLEQQGI---FDKLSNLLQDSEEDP--RLSSLLLPGRM------KFFGNLAR-------VSPQ---EVLELYPAFLERLF 296 (503)
T ss_pred HHHhCCH---HHHHHHHHhccccCC--cccchhhhhHH------HHHHHHHh-------cChH---HHHHHHHHHHHHHH
Confidence 1333444 577777777776644 11122233111 12222111 1122 34456677776666
Q ss_pred hhhhcccc----chhhhHhhhhccccccccccee-eccCCCCCCCCCCchhHHhhHHHHHHHHHhcCccc-hhhhhhhHH
Q 005769 341 AWEETEDL----SVFDCIKEIVNLHSKYELKNFI-VRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSA-TWRACSCVH 414 (678)
Q Consensus 341 ~Wee~ed~----~~fD~i~e~V~l~~s~g~~~F~-~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~~~p~a-~~rACkl~h 414 (678)
.+.++.|. .+||.+-.+--. .=|.. ++ .+ .+. -.+.+...++..+...+.. ..||=.+.-
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst--~~G~~-~L~~~-------~~~----~~~~~l~~~~~~~~~~~~~lk~r~l~al~ 362 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGST--VEGKQ-LLLQK-------QGP----AMKHVLKAIGDAIKSGSTELKLRALHALA 362 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCC--HHHHH-HHHhh-------cch----HHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 66555554 556666554211 12322 22 21 222 3334444444444455544 556555555
Q ss_pred HHhhCCC
Q 005769 415 TLLHVPK 421 (678)
Q Consensus 415 ~lL~~~~ 421 (678)
.+++.+.
T Consensus 363 ~il~~~~ 369 (503)
T PF10508_consen 363 SILTSGT 369 (503)
T ss_pred HHHhcCC
Confidence 5665554
No 17
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=0.97 Score=53.91 Aligned_cols=165 Identities=22% Similarity=0.348 Sum_probs=98.8
Q ss_pred eccccc-cCCCCCCCCcchhhhhccchhhHhhHhhHHHHHHhhC-hHHHHHHHHhhcccCccccCcchhHHHhhHHHHhh
Q 005769 34 VLPFLS-RFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK-SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGE 111 (678)
Q Consensus 34 v~~~ls-~f~~p~~~~~~~s~~~~~y~GaL~a~G~L~~~Lk~~~-k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~ge 111 (678)
|+||.. .+..|.= ++...+-||+|+.=+.--.-. ++++...+-.-|. -+..++=++|-+|.|.+|+
T Consensus 365 Vl~Fiee~i~~pdw---------r~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~---lm~D~sl~VkdTaAwtlgr 432 (859)
T KOG1241|consen 365 VLPFIEENIQNPDW---------RNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN---LMSDPSLWVKDTAAWTLGR 432 (859)
T ss_pred hHHHHHHhcCCcch---------hhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH---HhcCchhhhcchHHHHHHH
Confidence 678887 6776662 233488899998654322211 1122221111111 1224566888999999999
Q ss_pred hhccCCC-----CccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC-----------CChhhHHHHHHh
Q 005769 112 LASCLPE-----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP-----------PEWYPLLQVIVG 175 (678)
Q Consensus 112 la~~l~e-----~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p-----------p~~~pLLq~i~~ 175 (678)
.+.++|+ +......++++.+|.|.. =|=..+..|+-+|.++.|.- |-..++++.+++
T Consensus 433 I~d~l~e~~~n~~~l~~~l~~l~~gL~DeP-------rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~ 505 (859)
T KOG1241|consen 433 IADFLPEAIINQELLQSKLSALLEGLNDEP-------RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLK 505 (859)
T ss_pred HHhhchhhcccHhhhhHHHHHHHHHhhhCc-------hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHh
Confidence 9986555 444455556666666554 23345678999999888732 344667777777
Q ss_pred hcCCcc-chhhH---HHHHHHHHHhhccccccccc----hHHHHHHHHHH
Q 005769 176 RIGYED-EENSI---LFELLSSVVGAANENVADHI----PYIVSSLVAAI 217 (678)
Q Consensus 176 ~i~~~d-~e~~~---L~qll~~~vE~g~E~va~~l----p~iV~~~~~~~ 217 (678)
.-.-+| +++.+ .++-|..++..-..++...+ ++|-.+|...|
T Consensus 506 ~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i 555 (859)
T KOG1241|consen 506 VTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTI 555 (859)
T ss_pred hccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666 55433 47888888887666655422 45555554444
No 18
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.97 E-value=0.21 Score=44.93 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC-CCCChhhHHHHHHhhcCCccchhhHHHH---HHHHHHhh
Q 005769 122 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-MPPEWYPLLQVIVGRIGYEDEENSILFE---LLSSVVGA 197 (678)
Q Consensus 122 ~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~-~pp~~~pLLq~i~~~i~~~d~e~~~L~q---ll~~~vE~ 197 (678)
...|+.+++-|.||. .|||+-+-.-|+.||+... ....+..+|+.....+.++| +.+-.. .|..++++
T Consensus 2 ~~~~~~al~~L~dp~------~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~D--syVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 2 RETLQEALSDLNDPL------PPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDED--SYVYLNAIKGLAALADR 73 (92)
T ss_pred hHHHHHHHHHccCCC------cchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHHHH
Confidence 457899999999999 9999999999999999999 88889999999999998887 556544 44444444
Q ss_pred ccccccccchHHHHHH
Q 005769 198 ANENVADHIPYIVSSL 213 (678)
Q Consensus 198 g~E~va~~lp~iV~~~ 213 (678)
-++ ..+|.++..+
T Consensus 74 ~p~---~vl~~L~~~y 86 (92)
T PF10363_consen 74 HPD---EVLPILLDEY 86 (92)
T ss_pred ChH---HHHHHHHHHH
Confidence 222 2335555444
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=93.86 E-value=0.28 Score=58.77 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=54.5
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHh
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 175 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~ 175 (678)
...|--|+.-.|++|||+...+ +..++...++....+.. ..||...-.|..-+.=. .|++..++||.+++
T Consensus 453 i~e~~AKaaiiWILGEy~~~I~--~a~~~L~~~i~~f~~E~------~~VqlqlLta~vKlfl~--~p~~~~~~l~~vL~ 522 (746)
T PTZ00429 453 VVEEEAKVSLLWMLGEYCDFIE--NGKDIIQRFIDTIMEHE------QRVQLAILSAAVKMFLR--DPQGMEPQLNRVLE 522 (746)
T ss_pred cccHHHHHHHHHHHHhhHhhHh--hHHHHHHHHHhhhccCC------HHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHH
Confidence 4556677788899999998766 45666666666655544 78998887777765543 36678899999997
Q ss_pred hcCCcc
Q 005769 176 RIGYED 181 (678)
Q Consensus 176 ~i~~~d 181 (678)
...+.+
T Consensus 523 ~~t~~~ 528 (746)
T PTZ00429 523 TVTTHS 528 (746)
T ss_pred HHHhcC
Confidence 764444
No 20
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.50 E-value=0.042 Score=61.48 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.9
Q ss_pred chhccc
Q 005769 622 EHDIEL 627 (678)
Q Consensus 622 ~~d~el 627 (678)
+.|.+|
T Consensus 119 ~sd~~~ 124 (458)
T PF10446_consen 119 GSDYEF 124 (458)
T ss_pred ccccee
Confidence 344555
No 21
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=25 Score=43.05 Aligned_cols=433 Identities=16% Similarity=0.135 Sum_probs=225.0
Q ss_pred eccccccCCCCCCCCcchhhhhccchhhHhhHhhHHHHHHhhChH--------HHHHHHHhhcccCccc--cCcchhHHH
Q 005769 34 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSE--------FTANLVRSRVLPLYSV--SVCLPYLVA 103 (678)
Q Consensus 34 v~~~ls~f~~p~~~~~~~s~~~~~y~GaL~a~G~L~~~Lk~~~k~--------~~~~l~~~rV~P~~~~--~~~sp~LrA 103 (678)
+-..|.+|-.-+ |.+-+.++-|.-.+.++.-.=..++.+ -+-.+..++|+|...- .-..|.|+|
T Consensus 405 v~~~l~~y~~nP------S~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka 478 (960)
T KOG1992|consen 405 VQRLLDQYSKNP------SGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKA 478 (960)
T ss_pred HHHHHHHhccCC------CccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhh
Confidence 445556664322 345556666666667776543332211 1223444899996661 124567888
Q ss_pred hhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCC-------C----CChhhHHHH
Q 005769 104 SANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM-------P----PEWYPLLQV 172 (678)
Q Consensus 104 ~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~-------p----p~~~pLLq~ 172 (678)
-|---+=-|-+-++.+--..++-.+++.|.++. +-|--=||-||--++--+.. + |-..++|+-
T Consensus 479 ~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s------~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~n 552 (960)
T KOG1992|consen 479 DAIKYIYTFRNQLGKEHLMALLPRLIRFLEAES------RVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTN 552 (960)
T ss_pred cccceeeeecccCChHHHHHHHHHHHHhccCcc------hHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHH
Confidence 775222111123333333344444444444444 77778888888877644433 2 556678999
Q ss_pred HHhhcCCcc-chhhHHHHHHHHHHhhccccccccchHHHHH---HHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 005769 173 IVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSS---LVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 248 (678)
Q Consensus 173 i~~~i~~~d-~e~~~L~qll~~~vE~g~E~va~~lp~iV~~---~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~ 248 (678)
+++..+-.+ .|+..|-+.+--+.-+.++.+..|.|.++.. ++.+++|+-+ . ||.=-=-|+++++.-+.-..
T Consensus 553 Lf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs---~--P~fnHYLFEsi~~li~~t~~ 627 (960)
T KOG1992|consen 553 LFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPS---N--PQFNHYLFESIGLLIRKTCK 627 (960)
T ss_pred HHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCC---C--chhHHHHHHHHHHHHHHHhc
Confidence 998876665 5555888888888888888887777666544 4556666654 4 34433457777777664444
Q ss_pred hhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCC--CcccccHHHHHH-------HHHHHccccch
Q 005769 249 FLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAP--PSCIDDSSMLLR-------SIILSVSERNV 319 (678)
Q Consensus 249 ~~~de~~d~~~~~~~a~G~~~~~~a~stlLq~aw~~P~~~~E~~~~P~--~~~~~D~s~lle-------~il~~~t~~~~ 319 (678)
..| .|+ ...|..++|. ..+.+|..+++- ..+.....
T Consensus 628 ~~~--------------------~~v------------s~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~--- 672 (960)
T KOG1992|consen 628 ANP--------------------SAV------------SSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG--- 672 (960)
T ss_pred cCc--------------------hHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 443 011 1122333443 134455554443 22222221
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhccccchhhhHhhhhcccc---cccccceeeccCCCCCCCCCCchhHHhhHHHHHH
Q 005769 320 IEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHS---KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLS 396 (678)
Q Consensus 320 ~~~~kis~L~~vwa~~ia~w~~Wee~ed~~~fD~i~e~V~l~~---s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs 396 (678)
.++. ..|.+.+-++. =+.|+-.+- |.-+|-+.. +.|...|.. . .-+..|..++.
T Consensus 673 ~ip~---~~~~l~~~lLs-p~lW~r~gN------ipalvrLl~aflk~g~~~~~~--------~-----~~l~~iLGifq 729 (960)
T KOG1992|consen 673 TIPD---SYSPLFPPLLS-PNLWKRSGN------IPALVRLLQAFLKTGSQIVEA--------A-----DKLSGILGIFQ 729 (960)
T ss_pred CCch---hHHHHHHHhcC-HHHHhhcCC------cHHHHHHHHHHHhcCchhhcc--------c-----ccchhHHHHHH
Confidence 2233 23333333332 244553222 223333333 444433331 1 23566777778
Q ss_pred HHHhcCccchhhhhhhHHHHhhC-CCCCcccchhhhhhHHHHHHHHHhhhhhccCCCCCchhHHHHHHhhhhccChHHHH
Q 005769 397 EAILQYPSATWRACSCVHTLLHV-PKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVE 475 (678)
Q Consensus 397 ~ai~~~p~a~~rACkl~h~lL~~-~~~s~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~~l~KpLilvIssc~~ynP~lv~ 475 (678)
+.|. .++..--+=-+...++.+ +- -.++.++-.+....|.|+++ |+.-.+.|-++.-++ +|+.---..
T Consensus 730 kLia-Ska~Dh~GF~LLn~i~~~~~~------~~~~py~k~i~~llf~Rlqn--skT~kf~k~~~vF~~--~~~ik~~~~ 798 (960)
T KOG1992|consen 730 KLIA-SKANDHHGFYLLNTIIESIPP------NELAPYMKQIFGLLFQRLQN--SKTEKFVKSFIVFFS--LFTIKKGGL 798 (960)
T ss_pred HHhc-CcccchhHHHHHHHHHhcCCH------hhhhHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHH--HHHHHhhhH
Confidence 8884 222233333444444433 33 46677888889999999998 566667777655544 222111111
Q ss_pred HHHhhcCCCchhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHhhhhhh
Q 005769 476 GILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQE 555 (678)
Q Consensus 476 qiLek~~~~~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~~~~~~l~~c~~slle~~~~lke~~e 555 (678)
.|...-.++-..-|.|+--.--..=-+.....-|.|++.||..+++.-...+.. ......+..++..++.+-+...
T Consensus 799 -~l~e~~d~IQ~~~fg~l~e~~ii~~l~~i~~~~~rk~~avg~~~l~~e~~~~~d---~~y~~l~~~ll~sii~lfe~p~ 874 (960)
T KOG1992|consen 799 -MLAEVIDGIQPGMFGMLLENFIIPELPKIILRVDRKIMAVGATGLLTETPELLD---QKYAKLWGPLLFSIIVLFELPS 874 (960)
T ss_pred -HHHHHHhhcchhHHHHHHHHhccccchhhhhhhhHHHHHHHHhhhhhhcHHhhh---HHHHhhhhhHHHHHHHHHhCCh
Confidence 122222223333334433322222334566788999999999977622211111 1224455666666776666655
Q ss_pred c
Q 005769 556 D 556 (678)
Q Consensus 556 e 556 (678)
+
T Consensus 875 ~ 875 (960)
T KOG1992|consen 875 E 875 (960)
T ss_pred h
Confidence 4
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=2.2 Score=52.83 Aligned_cols=139 Identities=24% Similarity=0.273 Sum_probs=108.8
Q ss_pred CcchhHHHhhHHHHhhhhc----cCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHH
Q 005769 96 VCLPYLVASANWILGELAS----CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQ 171 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~----~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq 171 (678)
+..|-+|+-|.=.+-++.+ -+++++.+.+-+++|.++.... ...||=+-+-.|+++-++...- .|+.|||
T Consensus 48 ~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~-----~~~vr~k~~dviAeia~~~l~e-~WPell~ 121 (1075)
T KOG2171|consen 48 SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSET-----EPSVRHKLADVIAEIARNDLPE-KWPELLQ 121 (1075)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHHHhcccc-chHHHHH
Confidence 5666777777666665554 5667777888888888888877 5789999999999999998877 8999999
Q ss_pred HHHhhcCCcc-chhhHHHHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhh
Q 005769 172 VIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 247 (678)
Q Consensus 172 ~i~~~i~~~d-~e~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~ 247 (678)
.++-....++ +.-..-+-+|.++.+.=.+....||+.|..-| +|-|.-+..+ +--.+..|+.+|+.+.+
T Consensus 122 ~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf----~q~~~d~s~~---vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 122 FLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLF----SQTMTDPSSP---VRVAAVRALGAFAEYLE 191 (1075)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHH----HHhccCCcch---HHHHHHHHHHHHHHHhc
Confidence 9999997777 44446678888888887777888888999888 5555855554 55567888888888775
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.19 E-value=2.9 Score=47.74 Aligned_cols=376 Identities=18% Similarity=0.152 Sum_probs=191.3
Q ss_pred hHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhc-cCCCCccHHHHHHHHHHHhcccCCCCCc
Q 005769 64 AYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CLPEDISADVYSSLLKALQMLDKGDTSC 142 (678)
Q Consensus 64 a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~-~l~e~~~~~~~~sll~al~dp~~~~~s~ 142 (678)
.+-+|+..+..++ .++.+-.+-+|-.++ ...+-...-+|-+++.+-. ..+.....++-.-+.++|..|+
T Consensus 21 ~L~~l~~~~~~~~--~l~~~~~~~lf~~L~--~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~------ 90 (503)
T PF10508_consen 21 ALPELKTELSSSP--FLERLPEPVLFDCLN--TSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPS------ 90 (503)
T ss_pred HHHHHHHHHhhhh--HHHhchHHHHHHHHh--hcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC------
Confidence 4455555544432 233332222455455 2244455678888888776 5555567778888888999888
Q ss_pred CcchhhhhHHHHHHHhcCCCCCChh---hHHHHHHhhcCCccchhhHHHHHHHHHHhhccccccccchHHHHHHHHHHHh
Q 005769 143 YPVRASAAGAIVGLLENDYMPPEWY---PLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISK 219 (678)
Q Consensus 143 lPVRvsAa~Ai~sLie~~~~pp~~~---pLLq~i~~~i~~~d~e~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k 219 (678)
-.||.-+.-+|+.++++....-++. -++..|+..++++|.+ |++-+-.+.+
T Consensus 91 ~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~--------------------------Va~~A~~~L~ 144 (503)
T PF10508_consen 91 PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLS--------------------------VAKAAIKALK 144 (503)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHH--------------------------HHHHHHHHHH
Confidence 7899999999999998774321111 1222234444444422 2223333344
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcc
Q 005769 220 HMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSC 299 (678)
Q Consensus 220 ~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~~~~~~a~stlLq~aw~~P~~~~E~~~~P~~~~ 299 (678)
.|+.++...-+++..++ +..+.+......+ +.. .|.+..+..-+..-| ..+. .|
T Consensus 145 ~l~~~~~~~~~l~~~~~--~~~L~~l~~~~~~-------------~vR---~Rv~el~v~i~~~S~------~~~~--~~ 198 (503)
T PF10508_consen 145 KLASHPEGLEQLFDSNL--LSKLKSLMSQSSD-------------IVR---CRVYELLVEIASHSP------EAAE--AV 198 (503)
T ss_pred HHhCCchhHHHHhCcch--HHHHHHHHhccCH-------------HHH---HHHHHHHHHHHhcCH------HHHH--HH
Confidence 44444444333322111 1122221111100 001 233333322222200 0000 22
Q ss_pred cccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhhhccccchhhhHhhhhc-ccc-c-------cccccee
Q 005769 300 IDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVN-LHS-K-------YELKNFI 370 (678)
Q Consensus 300 ~~D~s~lle~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~~Wee~ed~~~fD~i~e~V~-l~~-s-------~g~~~F~ 370 (678)
.+ +-+|..+++.+++--..+.++.-+++ ..|-..=|...=.+..++|+-|-+++. ... . .|.-.|+
T Consensus 199 ~~--sgll~~ll~eL~~dDiLvqlnalell---~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 199 VN--SGLLDLLLKELDSDDILVQLNALELL---SELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred Hh--ccHHHHHHHHhcCccHHHHHHHHHHH---HHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 22 22677777777775555666444444 344444455556677888888888742 221 1 2322333
Q ss_pred eccCCCCCCCCCCchhHHhhHHHHHHHHHh--cCccchhhhhhhHHHHhhCCCCCcccchhh----hhhHHHHHHHHHhh
Q 005769 371 VRQMPPPPAPPVPPQSIIEGIGAFLSEAIL--QYPSATWRACSCVHTLLHVPKYSFETEGVK----QSLTISFSCAAFSR 444 (678)
Q Consensus 371 ~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~--~~p~a~~rACkl~h~lL~~~~~s~~~eg~~----d~~i~~f~~aA~~r 444 (678)
.. +-.- .+..+++.+-+|+.+... +..+.+.+.| .++++=+-+..+ ++.-.. ..-+..++..++.+
T Consensus 274 g~-la~~-----~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~-A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 274 GN-LARV-----SPQEVLELYPAFLERLFSMLESQDPTIREV-AFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred HH-HHhc-----ChHHHHHHHHHHHHHHHHHhCCCChhHHHH-HHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHH
Confidence 22 1111 122578888888887775 3444444443 366666666522 221122 22456677777777
Q ss_pred hhhccCCCCCchhHHHHHHhhhhccChH-HHHHHHhhcCCCchhhHHHHHHhhhcC-CCCCCCch-hhhhHHHHHHHHHH
Q 005769 445 FRAIQSKPSSLWKPVVLAISSCYLCYPA-VVEGILKKDEDGGFALWGSALAFLCSS-SLEPRLSL-ESEIKLAVLTLAKV 521 (678)
Q Consensus 445 l~~~~s~~~~l~KpLilvIssc~~ynP~-lv~qiLek~~~~~F~~W~saLa~~~~s-~~~~~l~~-ese~Kl~vl~L~~v 521 (678)
.++ .+..+....+.++++=+..-++ ...+++ .....|++.+.....+ -+-..+++ +.|+|++++.+.+-
T Consensus 346 ~~~---~~~~lk~r~l~al~~il~~~~~~~~~~i~-----~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~ 417 (503)
T PF10508_consen 346 IKS---GSTELKLRALHALASILTSGTDRQDNDIL-----SITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQA 417 (503)
T ss_pred hcC---CchHHHHHHHHHHHHHHhcCCCCchHHHH-----HHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 766 3444555588888865544443 233333 3567777776653333 11111222 48899988877754
Q ss_pred H
Q 005769 522 V 522 (678)
Q Consensus 522 i 522 (678)
+
T Consensus 418 l 418 (503)
T PF10508_consen 418 L 418 (503)
T ss_pred H
Confidence 3
No 24
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.72 E-value=0.62 Score=45.69 Aligned_cols=107 Identities=23% Similarity=0.285 Sum_probs=78.2
Q ss_pred hhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcC
Q 005769 99 PYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIG 178 (678)
Q Consensus 99 p~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~ 178 (678)
|-+|.+|.=++|-|+-.-| .........+.++|.|++ ..||-.|...|..|+.+++.... .+++..+++.+.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~------~~VR~~al~~Ls~Li~~d~ik~k-~~l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDED------PLVRKTALLVLSHLILEDMIKVK-GQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHcCceeeh-hhhhHHHHHHHc
Confidence 5689999999999887444 244456778889999998 99999999999999999886543 334467777776
Q ss_pred Cccch-hhHHHHHHHHHHhh-ccccccccchHHHHHH
Q 005769 179 YEDEE-NSILFELLSSVVGA-ANENVADHIPYIVSSL 213 (678)
Q Consensus 179 ~~d~e-~~~L~qll~~~vE~-g~E~va~~lp~iV~~~ 213 (678)
+++.+ .+..-.+|..+... .++-+..++|.++..|
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 66633 22345666666666 5566666778888777
No 25
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=91.47 E-value=0.081 Score=48.36 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=3.4
Q ss_pred HHHHHHHHHHHhhh
Q 005769 594 EEFLERYAKAAVNL 607 (678)
Q Consensus 594 ~e~Ler~a~~A~~l 607 (678)
+.=+=.|.++..+|
T Consensus 40 e~p~p~fgea~~~~ 53 (101)
T PF09026_consen 40 EVPVPEFGEAMAYF 53 (101)
T ss_dssp ------HHHHHHHH
T ss_pred cccchhHHHHHhhc
Confidence 33344444444443
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.10 E-value=0.24 Score=58.11 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=80.2
Q ss_pred cCcchhHHHhhHHHHhhhhc---cCCC-CccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCC--CCChhh
Q 005769 95 SVCLPYLVASANWILGELAS---CLPE-DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM--PPEWYP 168 (678)
Q Consensus 95 ~~~sp~LrA~A~Wv~gela~---~l~e-~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~--pp~~~p 168 (678)
+...|-+|.-.||.+++|++ +.+. +-+..+++-+++.++|-+ -=|+=.|..|.+.|.|+-.. .|-.-+
T Consensus 444 ~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N------K~VQEAAcsAfAtleE~A~~eLVp~l~~ 517 (885)
T KOG2023|consen 444 DDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN------KKVQEAACSAFATLEEEAGEELVPYLEY 517 (885)
T ss_pred ccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 47888999999999999998 3332 457789999999999998 67888999999999987552 367777
Q ss_pred HHHHHHhhcCCcc-chhhHHHHHHHHHHhhccccccccc--hHHH
Q 005769 169 LLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHI--PYIV 210 (678)
Q Consensus 169 LLq~i~~~i~~~d-~e~~~L~qll~~~vE~g~E~va~~l--p~iV 210 (678)
+||..+...+-=- -.--+|-.-+.+.++. |..|| |.-+
T Consensus 518 IL~~l~~af~kYQ~KNLlILYDAIgtlAds----vg~~Ln~~~Yi 558 (885)
T KOG2023|consen 518 ILDQLVFAFGKYQKKNLLILYDAIGTLADS----VGHALNKPAYI 558 (885)
T ss_pred HHHHHHHHHHHHhhcceehHHHHHHHHHHH----HHHhcCcHHHH
Confidence 7777777664433 2233677778888887 87787 5444
No 27
>PRK09687 putative lyase; Provisional
Probab=91.00 E-value=3 Score=44.22 Aligned_cols=53 Identities=25% Similarity=0.110 Sum_probs=39.4
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHH-HhcccCCCCCcCcchhhhhHHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKA-LQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~a-l~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
...|.+|..|.|++|++.. +......++..+... +.|++ .-||.+|+.||+.+
T Consensus 65 ~~d~~vR~~A~~aLg~lg~--~~~~~~~a~~~L~~l~~~D~d------~~VR~~A~~aLG~~ 118 (280)
T PRK09687 65 SKNPIERDIGADILSQLGM--AKRCQDNVFNILNNLALEDKS------ACVRASAINATGHR 118 (280)
T ss_pred CCCHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHhcCCC------HHHHHHHHHHHhcc
Confidence 6788999999999999875 111134566666555 45555 88999999999987
No 28
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=0.14 Score=62.75 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhh
Q 005769 434 TISFSCAAFSRFR 446 (678)
Q Consensus 434 i~~f~~aA~~rl~ 446 (678)
-.+|+++++.-|.
T Consensus 1528 r~Rf~qat~qVFh 1540 (3015)
T KOG0943|consen 1528 RMRFLQATAQVFH 1540 (3015)
T ss_pred HHHHHHHHHHHHh
Confidence 4578888888774
No 29
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=88.84 E-value=0.18 Score=60.89 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=8.8
Q ss_pred CcHHHHHHHHHhch
Q 005769 656 LSSQLISKFLKAYP 669 (678)
Q Consensus 656 lp~~l~~~f~~~~p 669 (678)
+-+.+.+|.+++|-
T Consensus 124 ~~e~~~~r~aee~~ 137 (1024)
T KOG1999|consen 124 LEEELAKRYAEEYI 137 (1024)
T ss_pred HHHHHHHHHHHhhc
Confidence 45666666666664
No 30
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=87.78 E-value=0.35 Score=44.31 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhhh
Q 005769 595 EFLERYAKAAVNL 607 (678)
Q Consensus 595 e~Ler~a~~A~~l 607 (678)
+-++-|+--++++
T Consensus 48 ea~~~~~~v~rYl 60 (101)
T PF09026_consen 48 EAMAYFTMVKRYL 60 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhcchHhhhh
Confidence 3344444455553
No 31
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=87.54 E-value=80 Score=39.60 Aligned_cols=390 Identities=18% Similarity=0.197 Sum_probs=205.6
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC-----CCCChhhHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-----MPPEWYPLL 170 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~-----~pp~~~pLL 170 (678)
++---+|-|||-.+|-++.-.+......+-..++++|..+. .. --+|.. .-+|++..+... -.+.+-|++
T Consensus 185 s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~-q~---~~~rt~-Iq~l~~i~r~ag~r~~~h~~~ivp~v 259 (1233)
T KOG1824|consen 185 SPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRT-QM---SATRTY-IQCLAAICRQAGHRFGSHLDKIVPLV 259 (1233)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCC-ch---HHHHHH-HHHHHHHHHHhcchhhcccchhhHHH
Confidence 34448999999999999997776666777778888887763 11 223321 112333333322 337777877
Q ss_pred HHHHhhcCCccch-hhHHHHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhh
Q 005769 171 QVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENF 249 (678)
Q Consensus 171 q~i~~~i~~~d~e-~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~ 249 (678)
-.-...+.++|.| -.-..|-|+...+.-+.++..|.|.|+.-.-.-| ..= |+-.- -.. | .--++-.+..
T Consensus 260 ~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yi-sYD-PNy~y-d~~-e------Ded~~~~ed~ 329 (1233)
T KOG1824|consen 260 ADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYI-SYD-PNYNY-DTE-E------DEDAMFLEDE 329 (1233)
T ss_pred HHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHh-ccC-CCCCC-CCc-c------chhhhhhhcc
Confidence 6666556555533 2345899999999999999999999996664444 111 11110 000 1 1111222223
Q ss_pred hhhh--h--hccccchhhhhhh----------------------------------------hHHHHHHHHHHHHhhccc
Q 005769 250 LREE--V--ELDQSSGKWESGQ----------------------------------------AAIAKAFSALLQQAWLTH 285 (678)
Q Consensus 250 ~~de--~--~d~~~~~~~a~G~----------------------------------------~~~~~a~stlLq~aw~~P 285 (678)
++|| + .|||.. .|.+-- +-+..++-.+|.+...+-
T Consensus 330 eDde~~deYsDDeD~-SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 330 EDDEQDDEYSDDEDM-SWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVI 408 (1233)
T ss_pred ccchhccccccccch-hHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence 3322 1 123322 476652 112222223333322211
Q ss_pred C-----CCCccccCCC----------------------------CcccccHHHHHH---------------HHHHHcccc
Q 005769 286 I-----QPLECEVSAP----------------------------PSCIDDSSMLLR---------------SIILSVSER 317 (678)
Q Consensus 286 ~-----~~~E~~~~P~----------------------------~~~~~D~s~lle---------------~il~~~t~~ 317 (678)
- ..||....|. ..|..-..+|.. -|..++++.
T Consensus 409 ~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~Dk 488 (1233)
T KOG1824|consen 409 EVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDK 488 (1233)
T ss_pred ccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCc
Confidence 1 1255444441 133333333322 567777777
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhhhccccchhhhHhhhhccc---------ccc---cccceeec------cCCCCCC
Q 005769 318 NVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLH---------SKY---ELKNFIVR------QMPPPPA 379 (678)
Q Consensus 318 ~~~~~~kis~L~~vwa~~ia~w~~Wee~ed~~~fD~i~e~V~l~---------~s~---g~~~F~~~------~~~~~~~ 379 (678)
+..-.+|+.-|+-+--.++- |. ...|+++++.. ++| ..+..+++ --|..|.
T Consensus 489 Ssss~~ki~~L~fl~~~L~s--~~---------p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~ 557 (1233)
T KOG1824|consen 489 SSSSNLKIDALVFLYSALIS--HP---------PEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPP 557 (1233)
T ss_pred cchHHHHHHHHHHHHHHHhc--CC---------hhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCC
Confidence 77778888888755544432 11 22333332211 111 11111111 1122221
Q ss_pred CCCCchhHHhhHHHHHHHHHhcCccc---hhhhhhhHHHHhhCCCCCcccchhhhhhHHHHHHHHHhhhhhccCCCC-Cc
Q 005769 380 PPVPPQSIIEGIGAFLSEAILQYPSA---TWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPS-SL 455 (678)
Q Consensus 380 ~p~~~~s~ie~l~~fvs~ai~~~p~a---~~rACkl~h~lL~~~~~s~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~-~l 455 (678)
..-...+|+.-+++-.-.-+++...+ ..||=+||--++-+-. +.-..-.++.+.+.+.|+++ ..++ +-
T Consensus 558 ~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg------D~l~~eL~~~L~il~eRl~n--EiTRl~A 629 (1233)
T KOG1824|consen 558 SSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG------DFLGNELPRTLPILLERLGN--EITRLTA 629 (1233)
T ss_pred ccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh------hhhhhhhHHHHHHHHHHHhc--hhHHHHH
Confidence 11112246665555544444433333 8899999999998887 88889999999999999975 1111 23
Q ss_pred hhHHHHHHhhhhccC--hHH------HHHHHhhcCCC---chhhHHHHHHhhhcCCCC-----------CCCchhhhhHH
Q 005769 456 WKPVVLAISSCYLCY--PAV------VEGILKKDEDG---GFALWGSALAFLCSSSLE-----------PRLSLESEIKL 513 (678)
Q Consensus 456 ~KpLilvIssc~~yn--P~l------v~qiLek~~~~---~F~~W~saLa~~~~s~~~-----------~~l~~ese~Kl 513 (678)
.|-|-.+..+-+..+ |.+ +.+.+.|.... .+..--..|-......+. +++-.|+++.+
T Consensus 630 vkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhv 709 (1233)
T KOG1824|consen 630 VKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHV 709 (1233)
T ss_pred HHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHH
Confidence 444555555555544 222 22355555544 233222223222222232 45888999999
Q ss_pred HHHHHHH
Q 005769 514 AVLTLAK 520 (678)
Q Consensus 514 ~vl~L~~ 520 (678)
+-++++=
T Consensus 710 t~~a~~~ 716 (1233)
T KOG1824|consen 710 TQLAVAF 716 (1233)
T ss_pred HHHHHHH
Confidence 9888763
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=87.18 E-value=81 Score=38.48 Aligned_cols=94 Identities=20% Similarity=0.133 Sum_probs=62.8
Q ss_pred hHhhHhhHHHHHHhhChHHHHHHHH-----------hhcccCc--cccCcchhHHHhhHHHHhhhhccCCCCc-cHHHHH
Q 005769 61 VLMAYGGLQEFLREQKSEFTANLVR-----------SRVLPLY--SVSVCLPYLVASANWILGELASCLPEDI-SADVYS 126 (678)
Q Consensus 61 aL~a~G~L~~~Lk~~~k~~~~~l~~-----------~rV~P~~--~~~~~sp~LrA~A~Wv~gela~~l~e~~-~~~~~~ 126 (678)
+++++.+|+.-|+...+-....=+| ..+++.. .+..++||+|.+|+-.+.+++...|+-. ......
T Consensus 103 alLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~ 182 (746)
T PTZ00429 103 ALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKK 182 (746)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHH
Confidence 7899999998887765544444343 1111110 1246889999999999999998766431 223445
Q ss_pred HHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 127 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 127 sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
.+.+.|.|.+ .=|...|..+|..+-+.+
T Consensus 183 ~L~~LL~D~d------p~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 183 DLVELLNDNN------PVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHhcCCC------ccHHHHHHHHHHHHHHhC
Confidence 5666566655 888899988888887655
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=85.67 E-value=0.87 Score=38.24 Aligned_cols=48 Identities=31% Similarity=0.299 Sum_probs=40.1
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
.+.|++|..|++++|++. ...+...++..+.+++ .-||..|+.||+.+
T Consensus 11 ~~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~------~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELG-------DPEAIPALIELLKDED------PMVRRAAARALGRI 58 (88)
T ss_dssp SSSHHHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSS------HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCC------HHHHHHHHHHHHHh
Confidence 678899999999999664 3367888888887777 78999999999865
No 34
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=84.73 E-value=0.53 Score=49.94 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=2.7
Q ss_pred HHHhhc
Q 005769 476 GILKKD 481 (678)
Q Consensus 476 qiLek~ 481 (678)
|+|+..
T Consensus 165 QvLe~E 170 (314)
T PF06524_consen 165 QVLESE 170 (314)
T ss_pred hhhhcc
Confidence 445443
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=83.33 E-value=1.6 Score=39.63 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=64.4
Q ss_pred cchhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCC---ccHHHHHHHHHHHh
Q 005769 57 DYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED---ISADVYSSLLKALQ 133 (678)
Q Consensus 57 ~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~---~~~~~~~sll~al~ 133 (678)
.++|.|+++++..-.|.+.-..|+..++ .-||..|+ ...+=+|..||=.+.+++....+. .+..+|..+.|.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il-~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEIL-PPVLKCFD--DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHH-HHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3559999999999999887565666554 45666666 778889999999999988633332 57889999999999
Q ss_pred cccCCCCCcCcchhhh
Q 005769 134 MLDKGDTSCYPVRASA 149 (678)
Q Consensus 134 dp~~~~~s~lPVRvsA 149 (678)
|++ .=||-.|
T Consensus 79 D~d------~~Vr~~a 88 (97)
T PF12755_consen 79 DPD------ENVRSAA 88 (97)
T ss_pred CCc------hhHHHHH
Confidence 998 5566554
No 36
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.86 E-value=0.85 Score=50.09 Aligned_cols=62 Identities=29% Similarity=0.227 Sum_probs=46.6
Q ss_pred cCcchhHHHhhHHHHhhhhccCC----CCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC
Q 005769 95 SVCLPYLVASANWILGELASCLP----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 161 (678)
Q Consensus 95 ~~~sp~LrA~A~Wv~gela~~l~----e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~ 161 (678)
..+.+=||+.|.||+|..++==| ..+-.+.++++++.|.-.+ +.-||+.|=+||.+||+|..
T Consensus 134 ~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~-----~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 134 ENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDD-----PNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCC-----CchHHHHHHHHHHHHHhcCc
Confidence 46667899999999999885111 1122336778888887333 68899999999999999976
No 37
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=81.96 E-value=0.79 Score=39.71 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=44.4
Q ss_pred CcchhHHHhhHHHHhhhhccCCCC----ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~----~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
...+.+|-.|+|.++.++.-.++. ....++..+++.|.+++ ..||..|+.+|+++.++.
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~------~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED------EEVVKAALWALRNLAAGP 80 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC------HHHHHHHHHHHHHHccCc
Confidence 334799999999999998632221 11256777788777754 899999999999998765
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=81.27 E-value=0.58 Score=40.56 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=54.5
Q ss_pred chhhHhhHhhHHHHHHhhChHHHHHHHH----hhcccCccccCcchhHHHhhHHHHhhhhccCCCCccH-----HHHHHH
Q 005769 58 YFGVLMAYGGLQEFLREQKSEFTANLVR----SRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA-----DVYSSL 128 (678)
Q Consensus 58 y~GaL~a~G~L~~~Lk~~~k~~~~~l~~----~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~-----~~~~sl 128 (678)
+.+++.+++.++..- +.....++. .++++.+. ...+.++..|+|++++++.-.++ ... .+...+
T Consensus 24 ~~~a~~~l~~l~~~~----~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~l~~l 96 (120)
T cd00020 24 QREAAWALSNLSAGN----NDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRNLAAGPED-NKLIVLEAGGVPKL 96 (120)
T ss_pred HHHHHHHHHHHhcCC----HHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHHHccCcHH-HHHHHHHCCChHHH
Confidence 457888888777442 223333333 33333333 45789999999999999874332 111 134455
Q ss_pred HHHHhcccCCCCCcCcchhhhhHHHHHHH
Q 005769 129 LKALQMLDKGDTSCYPVRASAAGAIVGLL 157 (678)
Q Consensus 129 l~al~dp~~~~~s~lPVRvsAa~Ai~sLi 157 (678)
++.|.+.+ ..||-.|..+|++|.
T Consensus 97 ~~~l~~~~------~~~~~~a~~~l~~l~ 119 (120)
T cd00020 97 VNLLDSSN------EDIQKNATGALSNLA 119 (120)
T ss_pred HHHHhcCC------HHHHHHHHHHHHHhh
Confidence 55555554 778999999998875
No 39
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.26 E-value=8.8 Score=38.23 Aligned_cols=138 Identities=18% Similarity=0.191 Sum_probs=81.9
Q ss_pred hHHHhhHHHHhhhhccCCCC---ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCCh-hhHHHHHHh
Q 005769 100 YLVASANWILGELASCLPED---ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW-YPLLQVIVG 175 (678)
Q Consensus 100 ~LrA~A~Wv~gela~~l~e~---~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~-~pLLq~i~~ 175 (678)
-|...||=+++.++..+... ....++..+++.+.+.. -.||-+|..+|..++++...++.. .++|. .
T Consensus 68 ~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~------~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~---~ 138 (228)
T PF12348_consen 68 KVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSK------KFIREAANNALDAIIESCSYSPKILLEILS---Q 138 (228)
T ss_dssp -HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---------HHHHHHHHHHHHHHHTTS-H--HHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHcccc------HHHHHHHHHHHHHHHHHCCcHHHHHHHHHH---H
Confidence 68899999999999744433 23445555556656655 689999999999999987744554 44442 2
Q ss_pred hcCCccch-hhHHHHHHHHHHhhcc---ccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhh
Q 005769 176 RIGYEDEE-NSILFELLSSVVGAAN---ENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLR 251 (678)
Q Consensus 176 ~i~~~d~e-~~~L~qll~~~vE~g~---E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~ 251 (678)
+...--.. -....+++..+.+.-+ ..+.. ...+..+...|.+.+. ++=+.+=+.|...+..|.++|.+.+.
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~--~~~~~~l~~~l~~~l~---D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQK--SAFLKQLVKALVKLLS---DADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG----HHHHHHHHHHHHHHHT---SS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc--cchHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 22222111 1134677777777755 22222 2223445555577778 88899988899999999888876654
No 40
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=80.38 E-value=1.7 Score=31.03 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=25.6
Q ss_pred HHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 125 YSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 125 ~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
+..+++.+.||+ .-||..|+.+|+.+.++.
T Consensus 2 lp~l~~~l~D~~------~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPS------PEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SS------HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCC------HHHHHHHHHHHHHHHhhC
Confidence 567889999999 899999999999998863
No 41
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=79.67 E-value=9.2 Score=38.37 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=77.2
Q ss_pred CcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCccchhhHH-HHHHHHHHhhccccccccchHHHHHHHHHHHhcC
Q 005769 143 YPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSIL-FELLSSVVGAANENVADHIPYIVSSLVAAISKHM 221 (678)
Q Consensus 143 lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d~e~~~L-~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l 221 (678)
+++|=.|=.-+-+||+.+...-++..++..+..++++ +.|=.+| ...+..++...++.+...|..+++.|...+.+.+
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~ 119 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKL 119 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccC
Confidence 8999999999999999999999999999999999988 6554555 7888888999999999999999999999998888
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHH
Q 005769 222 HPSSEPWPQVVERGFAALALMAQS 245 (678)
Q Consensus 222 ~p~~~~~~Q~ve~g~~alaa~~q~ 245 (678)
-+.+. -|-+|+.=+..-+.-++
T Consensus 120 k~~Av--kQE~Ek~~E~~rs~lr~ 141 (169)
T PF08623_consen 120 KENAV--KQEIEKQQELIRSVLRA 141 (169)
T ss_dssp -TTS---HHHHHHHHHHHHHHHHH
T ss_pred CCCcc--cccHHHHHHHHHHHHHH
Confidence 86655 78777655555444443
No 42
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=79.43 E-value=0.95 Score=46.70 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=7.6
Q ss_pred HhhhhcCcccCCC
Q 005769 604 AVNLENNTLVEEG 616 (678)
Q Consensus 604 A~~le~g~~~ee~ 616 (678)
..+|.+|++|+++
T Consensus 211 ~~YFDnGedDD~~ 223 (233)
T PF11705_consen 211 ENYFDNGEDDDYG 223 (233)
T ss_pred hccCCCCCcccCC
Confidence 3467777764433
No 43
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=78.85 E-value=4.5 Score=33.92 Aligned_cols=47 Identities=30% Similarity=0.263 Sum_probs=38.5
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIV 154 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~ 154 (678)
.+.|.+|..|+|.+|++. ...+...+.+.+.+++ +.-||-.|+.||+
T Consensus 42 d~~~~vr~~a~~aL~~i~-------~~~~~~~L~~~l~~~~-----~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 42 DEDPMVRRAAARALGRIG-------DPEAIPALIKLLQDDD-----DEVVREAAAEALG 88 (88)
T ss_dssp SSSHHHHHHHHHHHHCCH-------HHHTHHHHHHHHTC-S-----SHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-------CHHHHHHHHHHHcCCC-----cHHHHHHHHhhcC
Confidence 688999999999999985 3567888888888876 5678999988875
No 44
>PRK09687 putative lyase; Provisional
Probab=78.43 E-value=3.6 Score=43.69 Aligned_cols=18 Identities=22% Similarity=-0.084 Sum_probs=11.3
Q ss_pred cCcchhHHHhhHHHHhhh
Q 005769 95 SVCLPYLVASANWILGEL 112 (678)
Q Consensus 95 ~~~sp~LrA~A~Wv~gel 112 (678)
..+.|.+|+.|+..+|++
T Consensus 101 ~D~d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 101 EDKSACVRASAINATGHR 118 (280)
T ss_pred cCCCHHHHHHHHHHHhcc
Confidence 445566666666666665
No 45
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=78.40 E-value=79 Score=37.01 Aligned_cols=130 Identities=13% Similarity=0.166 Sum_probs=59.9
Q ss_pred ccchhhhhhhHHHHhhCCCCCcccchhhhhhHHHHHHHHHhhhhhccCCCCCchhHHHHHHhhhhccChHHHHHH-----
Q 005769 403 PSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGI----- 477 (678)
Q Consensus 403 p~a~~rACkl~h~lL~~~~~s~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~~l~KpLilvIssc~~ynP~lv~qi----- 477 (678)
+.-..+.=.|+++||.. +...-.+..++.+ ..-+.+|.++...++.+.+..+..-+...|......
T Consensus 65 s~Ld~~~~~LV~ail~~-~W~~~~~~~v~~y--------~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~ 135 (563)
T PF05327_consen 65 SLLDSSCKQLVEAILSL-NWLGRDEDFVEAY--------IQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPP 135 (563)
T ss_dssp GGG-SCCHHHHHHHHT--TGGGS-HHHHHHH--------HHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH------
T ss_pred HHhhhHHHHHHHHHHcC-CCCCCCHHHHHHH--------HHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhh
Confidence 33344545689999887 5321222222222 223334444445577777777777888777775543
Q ss_pred ------HhhcCCC----------chhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 005769 478 ------LKKDEDG----------GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYA 541 (678)
Q Consensus 478 ------Lek~~~~----------~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~~~~~~l~~c~~ 541 (678)
.++-+.. ....-...|. ..|.+.-.....- ++. +..||.+-.--+..-..++.
T Consensus 136 ~~~~~~~~~vH~~L~~Il~lvP~s~~~L~~~l~----~~FP~~~~~~~~~----~~Y---v~NlL~l~~Y~P~L~~~Il~ 204 (563)
T PF05327_consen 136 EKRREIYERVHDALQKILRLVPTSPSFLIPILV----QNFPHKRKSKDEH----VNY---VRNLLRLTEYCPELRSDILS 204 (563)
T ss_dssp ---------HHHHHHHHHHH-GGGHHHHHHHHH----HTS--TTS-HHHH----HHH---HHHHHHHHCC-GGGHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHH----HcCcCCCCChHHH----HHH---HHHHHHHHcchHHHHHHHHH
Confidence 1111111 1222222333 3365532222221 222 23444444443366678888
Q ss_pred HHHHHHHHhhh
Q 005769 542 SLMEAAVQLKE 552 (678)
Q Consensus 542 slle~~~~lke 552 (678)
.+++.++++.=
T Consensus 205 lIi~rLi~iDV 215 (563)
T PF05327_consen 205 LIIERLIKIDV 215 (563)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888887743
No 46
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=77.77 E-value=1.2 Score=55.25 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=6.2
Q ss_pred hhhHHHHHHhhcCCcc
Q 005769 166 WYPLLQVIVGRIGYED 181 (678)
Q Consensus 166 ~~pLLq~i~~~i~~~d 181 (678)
|..+||..+.-|++++
T Consensus 1197 ~~a~lki~faeiSeee 1212 (3015)
T KOG0943|consen 1197 LEAALKIAFAEISEEE 1212 (3015)
T ss_pred HHHHHHHHHHhhchhh
Confidence 3333443344443333
No 47
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=77.41 E-value=1.8 Score=52.69 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 005769 305 MLLRSIIL 312 (678)
Q Consensus 305 ~lle~il~ 312 (678)
+++++||.
T Consensus 184 Evm~EiIa 191 (840)
T PF04147_consen 184 EVMEEIIA 191 (840)
T ss_pred HHHHHHHH
Confidence 44444443
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=76.12 E-value=4.3 Score=45.14 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=62.4
Q ss_pred hhHhhHhhHHHHHHhhChH---------------HHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHH
Q 005769 60 GVLMAYGGLQEFLREQKSE---------------FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADV 124 (678)
Q Consensus 60 GaL~a~G~L~~~Lk~~~k~---------------~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~ 124 (678)
-++|++.+|+.=|....+- .+..-+...|....+ .++||+|.+|+=.+.++....|+.....+
T Consensus 76 ~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~~p~~~~~~~ 153 (526)
T PF01602_consen 76 LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLS--DPSPYVRKKAALALLKIYRKDPDLVEDEL 153 (526)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHCHCCHHGGH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhc--CCchHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4677777777555553321 122223355666655 88999999999999999987665422226
Q ss_pred HHHHHHHHhcccCCCCCcCcchhhhhHHHHHH
Q 005769 125 YSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 125 ~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
...+.+.|.|++ ..|+..|..++..+
T Consensus 154 ~~~l~~lL~d~~------~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 154 IPKLKQLLSDKD------PSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHTTHSS------HHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCc------chhHHHHHHHHHHH
Confidence 777788887777 88999999999888
No 49
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.04 E-value=10 Score=45.78 Aligned_cols=154 Identities=21% Similarity=0.232 Sum_probs=101.7
Q ss_pred CccceeeccccccCCCCCCCCcchhhhhccchhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccC--cch-hHHHh
Q 005769 28 TMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSV--CLP-YLVAS 104 (678)
Q Consensus 28 ~~g~~lv~~~ls~f~~p~~~~~~~s~~~~~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~--~sp-~LrA~ 104 (678)
..+|-+.--||--|..+..+.. ..-||+|+|+|-.-|.+.=..|+..+. |-..+.. +.- ++-+.
T Consensus 592 ~~~d~iM~lflri~~s~~s~~v--------~e~a~laV~tl~~~Lg~~F~kym~~f~-----pyL~~gL~n~~e~qVc~~ 658 (859)
T KOG1241|consen 592 EVSDQIMGLFLRIFESKRSAVV--------HEEAFLAVSTLAESLGKGFAKYMPAFK-----PYLLMGLSNFQEYQVCAA 658 (859)
T ss_pred hHHHHHHHHHHHHHcCCccccc--------hHHHHHHHHHHHHHHhHhHHHHHHHHH-----HHHHHHhhcchHHHHHHH
Confidence 5566655556666665332211 346899999999887775322333322 1111111 111 56788
Q ss_pred hHHHHhhhhc-----cCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC--CChhhHHHHHHhhc
Q 005769 105 ANWILGELAS-----CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP--PEWYPLLQVIVGRI 177 (678)
Q Consensus 105 A~Wv~gela~-----~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p--p~~~pLLq~i~~~i 177 (678)
|.=++|.+++ |.| -+..+.+.|++.|..|.... +-=|+=.|.=|=|+.-|+++..| ..+.|+||++-+.-
T Consensus 659 aVglVgdl~raL~~~i~p--y~d~~mt~Lvq~Lss~~~hR-~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~ 735 (859)
T KOG1241|consen 659 AVGLVGDLARALEDDILP--YCDELMTVLVQCLSSPNLHR-NVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ 735 (859)
T ss_pred HHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHccCccccc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 8889999997 677 77788999999999999776 33466678888899999999887 88999999987333
Q ss_pred CCc--cchhhHHHHHHHHHHhh
Q 005769 178 GYE--DEENSILFELLSSVVGA 197 (678)
Q Consensus 178 ~~~--d~e~~~L~qll~~~vE~ 197 (678)
.+. ++.-...++|.+.++|+
T Consensus 736 ~d~~~~~~~dYvd~LRe~~lea 757 (859)
T KOG1241|consen 736 TDPADDSMVDYVDELREGILEA 757 (859)
T ss_pred CCCCcccHHHHHHHHHHHHHHH
Confidence 222 23333667777777775
No 50
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=75.36 E-value=2.8 Score=32.95 Aligned_cols=47 Identities=30% Similarity=0.400 Sum_probs=28.5
Q ss_pred hhhHhhHhhHH----HHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhh
Q 005769 59 FGVLMAYGGLQ----EFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGEL 112 (678)
Q Consensus 59 ~GaL~a~G~L~----~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gel 112 (678)
.+++.++|.+. ..++.+-+..+ ..+++... .+.+.+|.+|||.+|++
T Consensus 5 ~~A~~aLg~l~~~~~~~~~~~~~~~~-----~~L~~~L~--d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 5 RAAAWALGRLAEGCPELLQPYLPELL-----PALIPLLQ--DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHCTTTTTHHHHHHHHHHHH-----HHHHHHTT--SSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHhhHhcccHHHHHHHHHHHH-----HHHHHHHc--CCCHHHHHHHHHHHhcC
Confidence 47888888644 33333222222 23335554 45569999999999975
No 51
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=72.67 E-value=0.47 Score=51.73 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=11.8
Q ss_pred chhhHHHHhhhhhhhhcc
Q 005769 634 DQLKVVASSIERYHNVIM 651 (678)
Q Consensus 634 D~~~~Vls~~~k~H~~l~ 651 (678)
+...+||-..+|-||+=+
T Consensus 329 ~~~~~~~c~~~kv~r~k~ 346 (375)
T PF03153_consen 329 DTDNVVLCQYDKVTRVKN 346 (375)
T ss_dssp TTS-EEEEEEEEEEEETT
T ss_pred CcCCEEEEEeeccccccc
Confidence 455678888888887543
No 52
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=71.98 E-value=1.7 Score=53.07 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=8.3
Q ss_pred cCcHHHHHHHHHhch
Q 005769 655 TLSSQLISKFLKAYP 669 (678)
Q Consensus 655 ~lp~~l~~~f~~~~p 669 (678)
.+++ +.+-|.++|-
T Consensus 120 ~~~~-~~e~~~~r~a 133 (1024)
T KOG1999|consen 120 QLNE-LEEELAKRYA 133 (1024)
T ss_pred hhhH-HHHHHHHHHH
Confidence 4455 6666666665
No 53
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=69.33 E-value=7.2 Score=41.14 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=3.2
Q ss_pred HhccCCCC
Q 005769 525 LLGLGNPG 532 (678)
Q Consensus 525 Llsl~~~~ 532 (678)
|..++.++
T Consensus 113 l~~lp~~n 120 (275)
T PF13324_consen 113 LKKLPKDN 120 (275)
T ss_dssp TTTS-SSH
T ss_pred HHHhhhhh
Confidence 44455544
No 54
>PHA02608 67 prohead core protein; Provisional
Probab=69.02 E-value=9.4 Score=34.00 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=10.0
Q ss_pred cchhhHHHHHHHHHH
Q 005769 534 SLLQDCYASLMEAAV 548 (678)
Q Consensus 534 ~~l~~c~~slle~~~ 548 (678)
-.+..-|.++|+.-.
T Consensus 14 V~akK~F~~~Me~rt 28 (80)
T PHA02608 14 VEAKKEFASIMEART 28 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355777888777644
No 55
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=67.71 E-value=2.9 Score=53.78 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=8.0
Q ss_pred HHHHhhhhhhhhcccccc
Q 005769 638 VVASSIERYHNVIMQGQT 655 (678)
Q Consensus 638 ~Vls~~~k~H~~l~~~q~ 655 (678)
+|.+-+|-..++-+.+-+
T Consensus 219 ~~~d~id~~~~~~~~~~~ 236 (2849)
T PTZ00415 219 DVFDKIDEAFETTEKGDG 236 (2849)
T ss_pred chhhhhhhhhcccccCCc
Confidence 344444444444444433
No 56
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=67.27 E-value=32 Score=33.74 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=70.1
Q ss_pred hHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhc--cCCCCccHHHHHHHHHHHhcccCCCCC
Q 005769 64 AYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS--CLPEDISADVYSSLLKALQMLDKGDTS 141 (678)
Q Consensus 64 a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~--~l~e~~~~~~~~sll~al~dp~~~~~s 141 (678)
++-+|.|...+++. .++..+ .+++..+. .++|.+|.+|.=++.+|.. +.- ....+|..++++|.|++
T Consensus 8 ~i~~l~DL~~r~~~-~ve~~~-~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~ik--~k~~l~~~~l~~l~D~~----- 76 (178)
T PF12717_consen 8 AIIALGDLCIRYPN-LVEPYL-PNLYKCLR--DEDPLVRKTALLVLSHLILEDMIK--VKGQLFSRILKLLVDEN----- 76 (178)
T ss_pred HHHHHHHHHHhCcH-HHHhHH-HHHHHHHC--CCCHHHHHHHHHHHHHHHHcCcee--ehhhhhHHHHHHHcCCC-----
Confidence 44455555566442 333222 23333334 7789999999999999886 333 45567899999999998
Q ss_pred cCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCC
Q 005769 142 CYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGY 179 (678)
Q Consensus 142 ~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~ 179 (678)
.-||--|...+..+...- .|..+...+-.++..++.
T Consensus 77 -~~Ir~~A~~~~~e~~~~~-~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 77 -PEIRSLARSFFSELLKKR-NPNIIYNNFPELISSLNN 112 (178)
T ss_pred -HHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHhC
Confidence 789999999999998875 455555666555555544
No 57
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=67.16 E-value=18 Score=40.88 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=14.6
Q ss_pred HHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHh
Q 005769 517 TLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQL 550 (678)
Q Consensus 517 ~L~~vie~Llsl~~~~~~~l~~c~~slle~~~~l 550 (678)
++..|+-+|.+ ...+...+..++..+..+
T Consensus 116 ~~~nv~srL~n-----~k~vk~~~~~~~~~~~~~ 144 (432)
T PF09073_consen 116 ALNNVVSRLFN-----SKPVKEVVPGIEEGLRQV 144 (432)
T ss_pred HHHHHHHHHhc-----chHHHHHHHHHHHHHHHH
Confidence 45566656654 123445555555555443
No 58
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=64.82 E-value=5.6 Score=41.91 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=9.7
Q ss_pred CccCcccchHHHHHHHHH
Q 005769 585 EGDECEETEEEFLERYAK 602 (678)
Q Consensus 585 ddde~eE~e~e~Ler~a~ 602 (678)
|+++.|+++.+.|+.|++
T Consensus 140 d~~ddeDd~~~Ll~ELek 157 (244)
T PF04889_consen 140 DDDDDEDDTAALLRELEK 157 (244)
T ss_pred cccccchHHHHHHHHHHH
Confidence 334445555666666643
No 59
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.52 E-value=4.5 Score=45.48 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 005769 235 GFAALALMAQSWENFLRE 252 (678)
Q Consensus 235 g~~alaa~~q~~~~~~~d 252 (678)
+.+.++.--+||.-.+.|
T Consensus 11 a~~~~~~ete~~~~v~~d 28 (514)
T KOG3130|consen 11 AKARLEVETECRKKVDND 28 (514)
T ss_pred HHHHhHHHHHHHHHHhhh
Confidence 344455556777766553
No 60
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.48 E-value=1.7e+02 Score=35.65 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=58.5
Q ss_pred HHccccchhhhhhHHHHHHHHHHHHhhhhhhhhccccchhhhHhhhhcccccccccceee--ccCCCCCCCCCCchhHHh
Q 005769 312 LSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIV--RQMPPPPAPPVPPQSIIE 389 (678)
Q Consensus 312 ~~~t~~~~~~~~kis~L~~vwa~~ia~w~~Wee~ed~~~fD~i~e~V~l~~s~g~~~F~~--~~~~~~~~~p~~~~s~ie 389 (678)
|-.-.+-..+...++.-|.=|=..+++-++ ++|++++|-=|=+|++.+-+..+..|++ .-+.+=. +| ...+..
T Consensus 772 rLg~~~Pe~vAp~l~~f~~pWc~sl~~i~D--neEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~-np--~~~l~~ 846 (885)
T KOG2023|consen 772 RLGYICPEEVAPHLDSFMRPWCTSLRNIDD--NEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWS-NP--EDDLRD 846 (885)
T ss_pred hhhccCHHhcchhHHHHHHHHHHHhccccc--chhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhccc-Ch--HHHHHH
Confidence 333334444556778889999999999988 8899999999999988776555444432 2222222 22 134444
Q ss_pred hHHHHHHHHHhcCccchhhhhh
Q 005769 390 GIGAFLSEAILQYPSATWRACS 411 (678)
Q Consensus 390 ~l~~fvs~ai~~~p~a~~rACk 411 (678)
++..++-.--.+....-|++|.
T Consensus 847 ~f~kiL~g~k~qvg~~nW~~~~ 868 (885)
T KOG2023|consen 847 EFYKILQGFKNQVGKINWQRFS 868 (885)
T ss_pred HHHHHHHHHHHHhhhhhHHHHh
Confidence 4444443333355555788773
No 61
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=63.37 E-value=1.1e+02 Score=36.52 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=58.4
Q ss_pred hHhhHHHHHHhh-ChHHHHHHHHhhcccCccc----cCcchhHHHhhHHHHhhhhccCCC------CccHHHHHHHHHHH
Q 005769 64 AYGGLQEFLREQ-KSEFTANLVRSRVLPLYSV----SVCLPYLVASANWILGELASCLPE------DISADVYSSLLKAL 132 (678)
Q Consensus 64 a~G~L~~~Lk~~-~k~~~~~l~~~rV~P~~~~----~~~sp~LrA~A~Wv~gela~~l~e------~~~~~~~~sll~al 132 (678)
++|.++|++-.. +| ++|+.|..+- ---.|+..++-||..--|..-.++ ....+-|-.++.+|
T Consensus 431 c~g~iad~va~~i~p-------~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 431 CFGAIADHVAMIISP-------CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred HHHHHHHHHHHhcCc-------cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 377777776543 12 3566554441 012469999999998887752222 23566788888777
Q ss_pred hcccCCCCCcCcchhhhhHHHHHHHhcCCC
Q 005769 133 QMLDKGDTSCYPVRASAAGAIVGLLENDYM 162 (678)
Q Consensus 133 ~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~ 162 (678)
.-----...+--.|+++=.||+.||.-+-+
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLILICPD 533 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhhcch
Confidence 543211122577899999999999986643
No 62
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=62.39 E-value=2.5 Score=51.08 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=0.0
Q ss_pred CCCCCChh
Q 005769 222 HPSSEPWP 229 (678)
Q Consensus 222 ~p~~~~~~ 229 (678)
.|+|-+|+
T Consensus 338 ~P~PfgWL 345 (787)
T PF03115_consen 338 LPPPFGWL 345 (787)
T ss_dssp --------
T ss_pred CCCCcchh
Confidence 56667775
No 63
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=62.16 E-value=7.1 Score=46.98 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=17.1
Q ss_pred HHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhh
Q 005769 309 SIILSVSERNVIEELKLSELLLVWADLIGDWHAWE 343 (678)
Q Consensus 309 ~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~~We 343 (678)
--|+.+||-+.- ....|+-...-..|-.....=+
T Consensus 549 ~flkeit~rs~~-~~~~s~~f~~ik~l~k~~~~re 582 (960)
T KOG1189|consen 549 QFLKEITFRSSN-GKRSSEAFRQIKELQKRFKSRE 582 (960)
T ss_pred hhhhheeeeecC-CcchHHHHHHHHHHHHHHHHHH
Confidence 345666666554 2223444444455555555544
No 64
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=61.79 E-value=9.7 Score=48.05 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=18.0
Q ss_pred hhHHHHHHhhhhccChHHHHHHHhhcCCC
Q 005769 456 WKPVVLAISSCYLCYPAVVEGILKKDEDG 484 (678)
Q Consensus 456 ~KpLilvIssc~~ynP~lv~qiLek~~~~ 484 (678)
+|-||..=--|=+++|...-++|..+..|
T Consensus 1137 lr~ll~~K~~~SLa~PGE~VGvlAAQSIG 1165 (1640)
T KOG0262|consen 1137 LRRLLQLKYIRSLADPGEPVGVLAAQSIG 1165 (1640)
T ss_pred HHHHHHHHHHHHhcCCCCcceeeeecccC
Confidence 34466666666667777777766655444
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.50 E-value=18 Score=43.60 Aligned_cols=123 Identities=21% Similarity=0.272 Sum_probs=79.7
Q ss_pred cchhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhccc
Q 005769 57 DYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLD 136 (678)
Q Consensus 57 ~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~ 136 (678)
+-|-+=+|.+||+.|..- -+++=+-.-||-+.+ ++-||+|-||.=++=+.--=-|| -.+.+|--+...|-|||
T Consensus 122 n~ye~giAL~GLS~fvTp----dLARDLa~Dv~tLL~--sskpYvRKkAIl~lykvFLkYPe-Alr~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 122 NVYEVGLALSGLSCIVTP----DLARDLADDVFTLLN--SSKPYVRKKAILLLYKVFLKYPE-ALRPCFPRLVEKLEDPD 194 (877)
T ss_pred ccchhhheecccccccCc----hhhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhhH-hHhhhHHHHHHhccCCC
Confidence 345555688999888543 344444566777777 89999999998665332222243 34668889999999999
Q ss_pred CCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCccchhhHHHHHHHHHH
Q 005769 137 KGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVV 195 (678)
Q Consensus 137 ~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d~e~~~L~qll~~~v 195 (678)
.-|..+|++-||.|-+-. |.+.+||--..++..-+-.| +=+|..++++..
T Consensus 195 ------p~V~SAAV~VICELArKn--PknyL~LAP~ffkllttSsN-NWmLIKiiKLF~ 244 (877)
T KOG1059|consen 195 ------PSVVSAAVSVICELARKN--PQNYLQLAPLFYKLLVTSSN-NWVLIKLLKLFA 244 (877)
T ss_pred ------chHHHHHHHHHHHHHhhC--CcccccccHHHHHHHhccCC-CeehHHHHHHHh
Confidence 889999999999997755 43443333222333322221 236666666654
No 66
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=61.45 E-value=4.2e+02 Score=33.33 Aligned_cols=331 Identities=14% Similarity=0.102 Sum_probs=161.6
Q ss_pred CcchhhhhHHHHHHHhcC-CCCCChhhHHHHHHhhcCCcc--chhhHHHHHHHHHHhhccccccc---cc-hHHHHHHHH
Q 005769 143 YPVRASAAGAIVGLLEND-YMPPEWYPLLQVIVGRIGYED--EENSILFELLSSVVGAANENVAD---HI-PYIVSSLVA 215 (678)
Q Consensus 143 lPVRvsAa~Ai~sLie~~-~~pp~~~pLLq~i~~~i~~~d--~e~~~L~qll~~~vE~g~E~va~---~l-p~iV~~~~~ 215 (678)
+-||=++..++...-=+. ..++-..++.--+++....-. .+.-.|.+++..|+-...+.++. ++ +.+ .+|++
T Consensus 507 LT~~~a~~t~~~~~n~~~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L-~~lv~ 585 (947)
T COG5657 507 LTTREAYSTIFDDWNFSVCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLL-DNLVE 585 (947)
T ss_pred HHHHHHHHHHHHhcccccccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHH-HHHHH
Confidence 566666665555554444 333444444434445443322 34448899999999999999988 33 333 36666
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCC
Q 005769 216 AISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSA 295 (678)
Q Consensus 216 ~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~~~~~~a~stlLq~aw~~P~~~~E~~~~P 295 (678)
...|+-. -||....-|++..|.+.... +.|-.-++.....+.|
T Consensus 586 ~~~knps-----~p~~~h~~fe~I~al~~~~~--------------------------------~~~~~~ip~l~~~l~p 628 (947)
T COG5657 586 INAKNPS-----NPQFAHYTFEDIGALVFLKS--------------------------------GMCEITIPTLVLALVP 628 (947)
T ss_pred HHccCCc-----cHHHHHHHHHHHHHHHHhhh--------------------------------cccccchHHHHHhhCc
Confidence 6655433 26666666666655544221 1122222222233444
Q ss_pred C--CcccccHHHHHHHHHHHccccchhhhhh-HHHHHHHHHHHHhhhhhhhhccccchhhhHhhhhcc-cccccccceee
Q 005769 296 P--PSCIDDSSMLLRSIILSVSERNVIEELK-LSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNL-HSKYELKNFIV 371 (678)
Q Consensus 296 ~--~~~~~D~s~lle~il~~~t~~~~~~~~k-is~L~~vwa~~ia~w~~Wee~ed~~~fD~i~e~V~l-~~s~g~~~F~~ 371 (678)
. .++..|+.++.--++-++...-..-.-+ +.+.+..=...-.+=+-|+- -.-|-.++.+ ++.--+.+.+.
T Consensus 629 ~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q~~~~t~ll~~------~~~I~~~~~Ll~~~~~~~~~if 702 (947)
T COG5657 629 EFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQPSLATELLPT------KLEILKSYRLLDNPILTTGYIF 702 (947)
T ss_pred cchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhcccCchHHHHH------HHHHHHHHHHHHhhhhcccccc
Confidence 4 3556666666654443332211111111 11111000000001122220 0011111111 11111112222
Q ss_pred ccCCCCCCCCCCchhHHhhHHHHHHHHHh--cCccchhhhhhhHHHHhhCCCCCcccchhhhhhHHHHHHHHHhhhhhcc
Q 005769 372 RQMPPPPAPPVPPQSIIEGIGAFLSEAIL--QYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQ 449 (678)
Q Consensus 372 ~~~~~~~~~p~~~~s~ie~l~~fvs~ai~--~~p~a~~rACkl~h~lL~~~~~s~~~eg~~d~~i~~f~~aA~~rl~~~~ 449 (678)
+ . |-.+-+-.++..-++ .+.+.|-.-|..++.+..-- .-...+..+.-.+.+|+++
T Consensus 703 ~-------~-----s~~~~vL~i~~~ll~~e~~~~~~f~~~~~v~~l~~~~--------i~~~~v~~i~~lll~rl~n-- 760 (947)
T COG5657 703 K-------S-----SGFQPVLGILQYLLGSEPHDALCFLNLTVVETLYLEN--------IYEPYVNLIFVLLLSRLKN-- 760 (947)
T ss_pred c-------c-----cchhhhHHHHHHHHhcchHHHHHHhhHHHHHHhHHHH--------HHhhcHHHHHHHHHHHhhc--
Confidence 1 1 122233445555555 22222444444444443322 2233455777778888876
Q ss_pred CCCCCchhHHHHHHhhhhcc--------ChHHHHHHHhhcCCCchhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHH
Q 005769 450 SKPSSLWKPVVLAISSCYLC--------YPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKV 521 (678)
Q Consensus 450 s~~~~l~KpLilvIssc~~y--------nP~lv~qiLek~~~~~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~v 521 (678)
|+...+.+-.+.+++ +++ .|..+.++=+-.+...-.+|...+-. +++ .-.--++|+..+|++++
T Consensus 761 s~~~r~v~~~i~~fs--~v~~k~~~t~~~dnlI~ki~q~k~i~i~~l~g~~Il~-----~~~-i~~~~drKi~~ig~snl 832 (947)
T COG5657 761 SKTERFVIKIIHVFS--LVSFKDSLTVGCDNLISKINQTKNILIVQLYGNWILG-----FDE-IHDSKDRKIHLIGLSNL 832 (947)
T ss_pred ccchHHHHHhheeeE--EechhhccccCChHHHHHHHHHHHHHHHHHHhceeec-----cch-hccHHHHHHHHHhHHhh
Confidence 344445554555555 222 36677777766666666667666655 555 55568999999999966
Q ss_pred HHHHhccCCCCCcchhhHHHHHHHHHHHh-hhhhh
Q 005769 522 VERLLGLGNPGSSLLQDCYASLMEAAVQL-KEVQE 555 (678)
Q Consensus 522 ie~Llsl~~~~~~~l~~c~~slle~~~~l-ke~~e 555 (678)
+ . ...+..+. +.+..++.+.+ .++.+
T Consensus 833 l----r--t~~~~vls--~~sv~~li~~lLsei~e 859 (947)
T COG5657 833 L----R--TLHPEVLS--YVSVTNLIISLLSEIFE 859 (947)
T ss_pred h----h--hcCchhhh--HHHHHHHHHHHHHHHHH
Confidence 5 1 23224444 77777777764 44444
No 67
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=61.13 E-value=4 Score=49.74 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=4.0
Q ss_pred HHHhhhhhhh
Q 005769 639 VASSIERYHN 648 (678)
Q Consensus 639 Vls~~~k~H~ 648 (678)
|+..|-+-||
T Consensus 446 iI~RIrk~~h 455 (840)
T PF04147_consen 446 IIQRIRKCYH 455 (840)
T ss_pred HHHHHHHhCC
Confidence 3333334444
No 68
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=60.44 E-value=6 Score=47.67 Aligned_cols=58 Identities=26% Similarity=0.324 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCcc
Q 005769 120 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED 181 (678)
Q Consensus 120 ~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d 181 (678)
-....|...+..|--...++ -.-||-.|.--|..||-| .|.+=.-||-.+|-.+|..+
T Consensus 297 ~LK~ly~rfievLe~lS~D~--L~~vk~raL~ti~~lL~~--kPEqE~~LL~~lVNKlGDpq 354 (988)
T KOG2038|consen 297 ELKILYFRFIEVLEELSKDP--LEEVKKRALKTIYDLLTN--KPEQENNLLVLLVNKLGDPQ 354 (988)
T ss_pred HHHHHHHHHHHHHHHHcccc--HHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHhcCCcc
Confidence 33445555566665555555 244666777777777654 46566666766777777776
No 69
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=59.83 E-value=7.9 Score=48.02 Aligned_cols=18 Identities=11% Similarity=-0.101 Sum_probs=10.8
Q ss_pred hHHHHhhhhhhhhccccc
Q 005769 637 KVVASSIERYHNVIMQGQ 654 (678)
Q Consensus 637 ~~Vls~~~k~H~~l~~~q 654 (678)
+---+++.+.|....+.|
T Consensus 970 ~~~~~L~~~~~e~~~~~~ 987 (1128)
T KOG2051|consen 970 QDDEALLKAMHEKNPGFQ 987 (1128)
T ss_pred hHHHHHHHHHhhcCcccc
Confidence 335577777777665443
No 70
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=59.69 E-value=3 Score=50.02 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHhhHHHHHHH
Q 005769 387 IIEGIGAFLSE 397 (678)
Q Consensus 387 ~ie~l~~fvs~ 397 (678)
+-..|-.||-+
T Consensus 278 ~n~~i~~~in~ 288 (713)
T PF03344_consen 278 INRRIERFINR 288 (713)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44556666665
No 71
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=59.39 E-value=35 Score=40.55 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=83.4
Q ss_pred cchhhHhhHhhHHHHHHhhChHHHHHHHHhhccc--CccccCcchhHHHhhHHHHhhhhc-----cCCCCccHHHHHHHH
Q 005769 57 DYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLP--LYSVSVCLPYLVASANWILGELAS-----CLPEDISADVYSSLL 129 (678)
Q Consensus 57 ~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P--~~~~~~~sp~LrA~A~Wv~gela~-----~l~e~~~~~~~~sll 129 (678)
+...+.||+|+. |..-.+..+..++- .-+| ++-+..++-++..++.|++|++|. +.|+.-..-.-+..+
T Consensus 382 nreaavmAfGSv---m~gp~~~~lT~~V~-qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~l 457 (858)
T COG5215 382 NREAAVMAFGSV---MHGPCEDCLTKIVP-QALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASL 457 (858)
T ss_pred hHHHHHHHhhhh---hcCccHHHHHhhHH-hhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHH
Confidence 455788999974 33323433333332 2333 122345666999999999999997 445554445566677
Q ss_pred HHHhcccCCCCCcCcchhhh-hHHHHHHHhcCCC-----C----CChhhHHHHHHhhcCCccch---hhHHHHHHHHHHh
Q 005769 130 KALQMLDKGDTSCYPVRASA-AGAIVGLLENDYM-----P----PEWYPLLQVIVGRIGYEDEE---NSILFELLSSVVG 196 (678)
Q Consensus 130 ~al~dp~~~~~s~lPVRvsA-a~Ai~sLie~~~~-----p----p~~~pLLq~i~~~i~~~d~e---~~~L~qll~~~vE 196 (678)
.+|.|+. -|+.+ .-++-+|++|--. + |-.+.+|..++++..-.++| -.-+|..|+++++
T Consensus 458 iGl~D~p--------~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 458 IGLMDCP--------FRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred hhhhccc--------hHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 7766654 33333 2356667665321 2 44556666666655444444 3457999999999
Q ss_pred hccccccccc
Q 005769 197 AANENVADHI 206 (678)
Q Consensus 197 ~g~E~va~~l 206 (678)
...+.|+..+
T Consensus 530 ~~~d~V~~~~ 539 (858)
T COG5215 530 ICPDAVSDIL 539 (858)
T ss_pred hcchhHHHHH
Confidence 9777666544
No 72
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.24 E-value=5.9 Score=44.56 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhccc
Q 005769 271 AKAFSALLQQAWLTH 285 (678)
Q Consensus 271 ~~a~stlLq~aw~~P 285 (678)
.+-+-.+++++.-.|
T Consensus 26 ~~dye~~~erl~~~~ 40 (514)
T KOG3130|consen 26 DNDYEALRERLSTLP 40 (514)
T ss_pred hhhHHHHHHHHHHhh
Confidence 455666777777666
No 73
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=58.98 E-value=6.4 Score=47.33 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=6.9
Q ss_pred ccccccccccC
Q 005769 12 SKRKKGEKSKR 22 (678)
Q Consensus 12 ~krkkg~~~~~ 22 (678)
-.|+|++++++
T Consensus 71 lvR~k~d~n~~ 81 (960)
T KOG1189|consen 71 LVRDKNDDNKG 81 (960)
T ss_pred EecccCccccc
Confidence 45667766665
No 74
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.50 E-value=21 Score=43.10 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=26.4
Q ss_pred hHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCC
Q 005769 100 YLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGD 139 (678)
Q Consensus 100 ~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~ 139 (678)
-+...|.|+.|||+.+.- .++-+|.+|+-|-.+-
T Consensus 476 eVL~AaaWi~GEyse~ve------n~~~~leamlrpr~~~ 509 (877)
T KOG1059|consen 476 EVLYAAAWILGEYSEFVE------NPNDTLEAMLRPRSDL 509 (877)
T ss_pred HHHHHHHHHHHHHHHHhh------CHHHHHHHHhcCcccc
Confidence 456678899999999887 4667888888887333
No 75
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=57.94 E-value=18 Score=38.81 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHh--ccCCC--CC--cchhhHHHHHHHHH
Q 005769 509 SEIKLAVLTLAKVVERLL--GLGNP--GS--SLLQDCYASLMEAA 547 (678)
Q Consensus 509 se~Kl~vl~L~~vie~Ll--sl~~~--~~--~~l~~c~~slle~~ 547 (678)
.+|=|...-|=+-||.=| .|..| |. ++-++.|.-+|+..
T Consensus 149 eeKALvAakldkaIekELm~RLk~G~Ygd~yn~~~~~fnK~l~~~ 193 (303)
T KOG3064|consen 149 EEKALVAAKLDKAIEKELMERLKSGTYGDIYNFRQHAFNKALEAR 193 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCcccchHHHHHHHHHhh
Confidence 455566666666554322 24555 42 45577777777666
No 76
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.71 E-value=11 Score=46.18 Aligned_cols=48 Identities=21% Similarity=0.096 Sum_probs=28.8
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
.+.+.+|..|.+.+|++.. ......|+++|.|++ .-||..|+.||+.+
T Consensus 818 d~d~~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~D~~------~~VR~~A~~aL~~~ 865 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAA-------DVAVPALVEALTDPH------LDVRKAAVLALTRW 865 (897)
T ss_pred CCChHHHHHHHHHHHhccc-------cchHHHHHHHhcCCC------HHHHHHHHHHHhcc
Confidence 3455666666666665531 224466666666666 66777777666664
No 77
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=56.60 E-value=7.6 Score=45.23 Aligned_cols=16 Identities=25% Similarity=-0.024 Sum_probs=9.4
Q ss_pred CCchhhhhHHHHHHHH
Q 005769 504 RLSLESEIKLAVLTLA 519 (678)
Q Consensus 504 ~l~~ese~Kl~vl~L~ 519 (678)
+|.+..++|=|--+|-
T Consensus 161 aFV~fk~~~dA~~Al~ 176 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALE 176 (678)
T ss_pred EEEEEeeHHHHHHHHH
Confidence 3556666666655554
No 78
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=56.40 E-value=5.7 Score=38.68 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=7.2
Q ss_pred chHHHHHHHHH
Q 005769 592 TEEEFLERYAK 602 (678)
Q Consensus 592 ~e~e~Ler~a~ 602 (678)
.++-+++|+.+
T Consensus 49 ~dETl~ERl~a 59 (137)
T PF04281_consen 49 EDETLLERLWA 59 (137)
T ss_pred ccccHHHHHHH
Confidence 55557788764
No 79
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.22 E-value=6.6 Score=45.52 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=52.1
Q ss_pred HHHHHHHhhcccCccc---cCcchhHHHhhHHHHhhhhccCCC----CccHHHHHHHHHHHhcccCCCCCcCcchhhhhH
Q 005769 79 FTANLVRSRVLPLYSV---SVCLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAG 151 (678)
Q Consensus 79 ~~~~l~~~rV~P~~~~---~~~sp~LrA~A~Wv~gela~~l~e----~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~ 151 (678)
++.-++-...||-++- .++..++|.-|||+++....=.++ .+.++++.-|+..|..-+ +-.|..||-
T Consensus 313 QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e------f~~rKEAaw 386 (514)
T KOG0166|consen 313 QTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE------FDIRKEAAW 386 (514)
T ss_pred HHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc------hHHHHHHHH
Confidence 3344444445554432 234448999999999876652222 255667888888887666 899999999
Q ss_pred HHHHHHhcCC
Q 005769 152 AIVGLLENDY 161 (678)
Q Consensus 152 Ai~sLie~~~ 161 (678)
||+++.-.+-
T Consensus 387 aIsN~ts~g~ 396 (514)
T KOG0166|consen 387 AISNLTSSGT 396 (514)
T ss_pred HHHhhcccCC
Confidence 9998876655
No 80
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=55.90 E-value=20 Score=32.64 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC--CChhhHHHHHHhhcCCcc----chhhHHHHHHH
Q 005769 123 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP--PEWYPLLQVIVGRIGYED----EENSILFELLS 192 (678)
Q Consensus 123 ~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p--p~~~pLLq~i~~~i~~~d----~e~~~L~qll~ 192 (678)
.+...+|+++.|++ -=||-.|.-||-++....... +-+..+..++.+++.+.| +-+.+|+++||
T Consensus 27 ~Il~pVL~~~~D~d------~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQD------SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 34455555555555 889999999999999876543 455666667777777666 44556666664
No 81
>PF06213 CobT: Cobalamin biosynthesis protein CobT; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised [, ]. Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO). Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in P. denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively []. CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) []. Nomenclature note: CobT of the aerobic pathway P. denitrificans is not a homologue of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous.
Probab=53.43 E-value=49 Score=35.24 Aligned_cols=16 Identities=44% Similarity=0.592 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhccCCC
Q 005769 515 VLTLAKVVERLLGLGNP 531 (678)
Q Consensus 515 vl~L~~vie~Llsl~~~ 531 (678)
+|+|. +.++|.+.+..
T Consensus 145 al~l~-lr~rl~g~~~p 160 (282)
T PF06213_consen 145 ALALL-LRERLTGQPPP 160 (282)
T ss_pred HHHHH-HHHHHhCCCCc
Confidence 34444 44566665553
No 82
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=52.99 E-value=36 Score=41.29 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=20.1
Q ss_pred chhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHH
Q 005769 485 GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERL 525 (678)
Q Consensus 485 ~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~L 525 (678)
..-.|-.++-..-.+.... +-+.-+.+..+|.+.|.|.
T Consensus 796 F~l~W~~~il~~hG~~~~~---~~~~~~~~~~~lqk~i~r~ 833 (893)
T KOG0291|consen 796 FYLRWLRAILTYHGSSLKR---RAETLLPALTSLQKSIVRH 833 (893)
T ss_pred HHHHHHHHHHHHhhhhhhc---cceehhhHHHHHHHHHHHH
Confidence 6778888887743333222 1233344445666555444
No 83
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=52.95 E-value=15 Score=40.07 Aligned_cols=6 Identities=17% Similarity=0.019 Sum_probs=2.3
Q ss_pred HHHHHh
Q 005769 545 EAAVQL 550 (678)
Q Consensus 545 e~~~~l 550 (678)
+++.+.
T Consensus 72 elL~~~ 77 (324)
T PF05285_consen 72 ELLEEW 77 (324)
T ss_pred HHHHHH
Confidence 334433
No 84
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=52.73 E-value=69 Score=39.25 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=64.0
Q ss_pred HHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC-CChhhHHHHH-------
Q 005769 102 VASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP-PEWYPLLQVI------- 173 (678)
Q Consensus 102 rA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p-p~~~pLLq~i------- 173 (678)
...|||+++++...+.+.. ++..||..+.-+.|-.||+++..- ...+.+|..+
T Consensus 638 k~aANWl~~El~~~Lne~~-------------------i~~~~l~pe~LaeLv~lV~~g~IS~~~AK~VL~~m~~~~~~p 698 (771)
T PRK14703 638 VQLANWVVNDLAGLLRDRE-------------------LAALPFTPAALARLVALVDAGRISTRIAKDVLAELAASGGDP 698 (771)
T ss_pred HHHHHHHHHHHHHHHhcCC-------------------CccCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCH
Confidence 5569999999998666431 122444444444455555554433 2223333332
Q ss_pred ---HhhcCCcc-chhhHHHHHHHHHHhhccccccccc---hHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005769 174 ---VGRIGYED-EENSILFELLSSVVGAANENVADHI---PYIVSSLVAAISKHMHPSSEPWPQVVERGFA 237 (678)
Q Consensus 174 ---~~~i~~~d-~e~~~L~qll~~~vE~g~E~va~~l---p~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~ 237 (678)
++.-|-.- +|...|..+...+++.-++.|...- +-++..|+++++|.+-=-++ |++|.+.|.
T Consensus 699 ~~IIee~GL~qisDe~~Le~iV~eVI~~NP~~Ve~yk~GK~kalgfLVGqVMK~tkGKAd--P~~V~elLk 767 (771)
T PRK14703 699 EAIVEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGKTKLLGFFVGQVMRETGGKAN--PQQVRELLQ 767 (771)
T ss_pred HHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHhcchHHHHHHHHHHHHHHhCCCCC--HHHHHHHHH
Confidence 23222222 3334566666666666555555544 56667777777777776666 677765544
No 85
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=51.50 E-value=37 Score=36.78 Aligned_cols=50 Identities=24% Similarity=0.229 Sum_probs=38.5
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
..|...|-.+..|+||+-+ ...-.++.+.|.+..- -.=||..||.||+..
T Consensus 198 ~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~d~~E----~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 198 DDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLLDETE----HPMVRHEAAEALGAI 247 (289)
T ss_pred cchHHHHHHHHHHHhhccc-------hhhhHHHHHHHHhhhc----chHHHHHHHHHHHhh
Confidence 5588999999999999976 2234678888888662 245999999999864
No 86
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=51.03 E-value=25 Score=44.73 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHhhhh--hccCCCCCchhH-H--HHHHhhhhccChHHHHHHH
Q 005769 431 QSLTISFSCAAFSRFR--AIQSKPSSLWKP-V--VLAISSCYLCYPAVVEGIL 478 (678)
Q Consensus 431 d~~i~~f~~aA~~rl~--~~~s~~~~l~Kp-L--ilvIssc~~ynP~lv~qiL 478 (678)
+++=+|=.+++++-|- +--.++..+=.| | |++.|++=|-.|..+.-++
T Consensus 1162 QSIGEPSTQMTLNTFHfAGrGemNVTLGIPRLREIlMtASanIkTP~mt~pi~ 1214 (1640)
T KOG0262|consen 1162 QSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASANIKTPSMTVPIK 1214 (1640)
T ss_pred cccCCCcceeehhheeeccccceeeeecchHHHHHHHHHhhccCCCceeeecc
Confidence 5556666666666551 222355555555 3 5566666666666555443
No 87
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=50.41 E-value=11 Score=45.26 Aligned_cols=6 Identities=50% Similarity=0.346 Sum_probs=3.1
Q ss_pred hhhHHH
Q 005769 509 SEIKLA 514 (678)
Q Consensus 509 se~Kl~ 514 (678)
.|||+.
T Consensus 151 lEKkl~ 156 (822)
T KOG2141|consen 151 LEKKLK 156 (822)
T ss_pred HHHHHh
Confidence 455554
No 88
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=49.88 E-value=33 Score=40.02 Aligned_cols=89 Identities=21% Similarity=0.272 Sum_probs=59.0
Q ss_pred hhHhhHhhHHHHHHhh-ChHHHHHHHHhhcccCccccCcch--hHHHhhHHHHhhhhc---cCCCCc--cHHHHHHHHHH
Q 005769 60 GVLMAYGGLQEFLREQ-KSEFTANLVRSRVLPLYSVSVCLP--YLVASANWILGELAS---CLPEDI--SADVYSSLLKA 131 (678)
Q Consensus 60 GaL~a~G~L~~~Lk~~-~k~~~~~l~~~rV~P~~~~~~~sp--~LrA~A~Wv~gela~---~l~e~~--~~~~~~sll~a 131 (678)
-++.|.|.|.++|.-. +....+.+-..-+ -+...+.+-+ -++=+||.++|-|-. +..++| -..+|+.++..
T Consensus 503 navraLgnllQvlq~i~~~~~~e~~~~~~~-~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~L 581 (728)
T KOG4535|consen 503 NAVRALGNLLQFLQPIEKPTFAEIIEESIQ-ALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSL 581 (728)
T ss_pred HHHHHHhhHHHHHHHhhhccHHHHHHHHHH-hcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHH
Confidence 7788999999998843 4444444433111 1111111111 588999999998875 323332 35689999999
Q ss_pred HhcccCCCCCcCcchhhhhHHHH
Q 005769 132 LQMLDKGDTSCYPVRASAAGAIV 154 (678)
Q Consensus 132 l~dp~~~~~s~lPVRvsAa~Ai~ 154 (678)
+++.. -.-||+.||+||.
T Consensus 582 v~~~~-----NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 582 VTSCK-----NFKVRIRAAAALS 599 (728)
T ss_pred HHHhc-----cceEeehhhhhhc
Confidence 99987 5889999999985
No 89
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.49 E-value=70 Score=36.19 Aligned_cols=53 Identities=26% Similarity=0.014 Sum_probs=38.5
Q ss_pred ccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHH
Q 005769 89 LPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 89 ~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
.+... .++|++|+.|..++|++..- .....+..++.+++ --||..|++|+.-+
T Consensus 153 ~~~L~--d~d~~Vra~A~raLG~l~~~-------~a~~~L~~al~d~~------~~VR~aA~~al~~l 205 (410)
T TIGR02270 153 EAALT--HEDALVRAAALRALGELPRR-------LSESTLRLYLRDSD------PEVRFAALEAGLLA 205 (410)
T ss_pred HHHhc--CCCHHHHHHHHHHHHhhccc-------cchHHHHHHHcCCC------HHHHHHHHHHHHHc
Confidence 34444 78899999999999998751 12233667777777 88999998887443
No 90
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.26 E-value=44 Score=34.99 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHH
Q 005769 537 QDCYASLMEAAV 548 (678)
Q Consensus 537 ~~c~~slle~~~ 548 (678)
++-+..||+.-.
T Consensus 11 Gnrm~~LL~~E~ 22 (240)
T PF05764_consen 11 GNRMKKLLEEEL 22 (240)
T ss_pred hHHHHHHHHHHH
Confidence 444555555544
No 91
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=47.72 E-value=29 Score=33.56 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhhhhhccc
Q 005769 539 CYASLMEAAVQLKEVQEDEE 558 (678)
Q Consensus 539 c~~slle~~~~lke~~ee~~ 558 (678)
||.-+=+.+..||.-..+-.
T Consensus 92 ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 92 LLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHHhHHHHHHHHHHHHHHcC
Confidence 44444444455655555333
No 92
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.30 E-value=26 Score=43.95 Aligned_cols=61 Identities=23% Similarity=0.040 Sum_probs=52.6
Q ss_pred cchhHHHhhHHHHhhhhc----cCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC
Q 005769 97 CLPYLVASANWILGELAS----CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP 163 (678)
Q Consensus 97 ~sp~LrA~A~Wv~gela~----~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p 163 (678)
+.|-||-=.|-++|+|=. .-+..+..+.+.-++..|.||- +=||+.|++||+.||.+..+.
T Consensus 612 ~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~v------pEVRaAAVFALgtfl~~~~d~ 676 (1387)
T KOG1517|consen 612 PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPV------PEVRAAAVFALGTFLSNGSDN 676 (1387)
T ss_pred ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCcc------HHHHHHHHHHHHHHhcccccc
Confidence 579999999999999865 3333477889999999999988 889999999999999998763
No 93
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=46.01 E-value=15 Score=43.41 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=16.3
Q ss_pred cCccchhhhhhhHHHHhhCCC
Q 005769 401 QYPSATWRACSCVHTLLHVPK 421 (678)
Q Consensus 401 ~~p~a~~rACkl~h~lL~~~~ 421 (678)
.+..+..||||+.-.||....
T Consensus 7 ~~dvDalcA~kiL~~Llk~d~ 27 (622)
T PF02724_consen 7 ALDVDALCACKILTSLLKSDN 27 (622)
T ss_pred cCChHHHHHHHHHHHHHHhcC
Confidence 344558899999988888776
No 94
>PF07093 SGT1: SGT1 protein; InterPro: IPR010770 This family consists of several eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known to suppress GCR2 and is highly expressed in the muscle and heart. The function of this family is unknown although it has been speculated that SGT1 may be functionally analogous to the Gcr2p protein of Saccharomyces cerevisiae which is known to be a regulatory factor of glycolytic gene expression [].
Probab=45.32 E-value=41 Score=39.60 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=8.3
Q ss_pred cChHHHHHHHhhcC
Q 005769 469 CYPAVVEGILKKDE 482 (678)
Q Consensus 469 ynP~lv~qiLek~~ 482 (678)
-+|+..++.|++..
T Consensus 393 i~~edLe~~L~er~ 406 (589)
T PF07093_consen 393 IDPEDLERELQERQ 406 (589)
T ss_pred CCHHHHHHHHHHHh
Confidence 35666666666543
No 95
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=44.67 E-value=2e+02 Score=35.60 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=74.6
Q ss_pred HHHHHhcCCCCCC-----hhhHHHHHHhhcCCccchhhH----HHHHHHHHHhhccccccc--cchHHHHHHHH------
Q 005769 153 IVGLLENDYMPPE-----WYPLLQVIVGRIGYEDEENSI----LFELLSSVVGAANENVAD--HIPYIVSSLVA------ 215 (678)
Q Consensus 153 i~sLie~~~~pp~-----~~pLLq~i~~~i~~~d~e~~~----L~qll~~~vE~g~E~va~--~lp~iV~~~~~------ 215 (678)
|.-.|.+-|+-++ -.-....|++++|-.|.+.++ ..-++--..|-..|+-+- -+++++..|+.
T Consensus 718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpyl 797 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYL 797 (1172)
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccch
Confidence 4455556565555 566778888888777733333 333444445555554421 22555555543
Q ss_pred -----HHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhh--------------hhHHHHHHHH
Q 005769 216 -----AISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESG--------------QAAIAKAFSA 276 (678)
Q Consensus 216 -----~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G--------------~~~~~~a~st 276 (678)
+|.++|--.+ +-+=.+|..-++..+..+-.-..++. +.-.| ...|++|++.
T Consensus 798 pqi~stiL~rLnnks---a~vRqqaadlis~la~Vlktc~ee~~-------m~~lGvvLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKS---AKVRQQAADLISSLAKVLKTCGEEKL-------MGHLGVVLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred HHHHHHHHHHhcCCC---hhHHHHHHHHHHHHHHHHHhccHHHH-------HHHhhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 2344444222 22323344443333332222111110 22222 2346788888
Q ss_pred HHHHh----hcccCCCCccccCCCC-----cccccHHHHHHHH
Q 005769 277 LLQQA----WLTHIQPLECEVSAPP-----SCIDDSSMLLRSI 310 (678)
Q Consensus 277 lLq~a----w~~P~~~~E~~~~P~~-----~~~~D~s~lle~i 310 (678)
|--.. --.|..++=+.+.||. -....|.+|...|
T Consensus 868 I~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~I 910 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTI 910 (1172)
T ss_pred HHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHH
Confidence 87776 3344677778888874 3334455666644
No 96
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=44.30 E-value=2.6e+02 Score=35.14 Aligned_cols=202 Identities=14% Similarity=0.043 Sum_probs=103.6
Q ss_pred CCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCcc-----chhhHHHHHH
Q 005769 117 PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-----EENSILFELL 191 (678)
Q Consensus 117 ~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d-----~e~~~L~qll 191 (678)
.++-...+-..++..+.+++ -=+|-++|.+|.. |-+-.+|..|+.|+.+|++.++... .-.+.|.+|.
T Consensus 84 ~e~~K~~IRe~Ll~~l~~sn------~ki~~~vay~is~-Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 84 SEEVKALIREQLLNLLDDSN------SKIRSAVAYAISS-IAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred cHHHHHHHHHHHHhhhhccc------cccchHHHHHHHH-HHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 33445567778888888777 5667777777754 5556679999999999999997532 2234566666
Q ss_pred HHHHhhc-cccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhHH
Q 005769 192 SSVVGAA-NENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAI 270 (678)
Q Consensus 192 ~~~vE~g-~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~~~~ 270 (678)
..+.+-. -+....-+|.+.--| +...+|-...--.+. ++--|..|..=-..=++-+.+.+-.--+.|
T Consensus 157 ~ev~~ee~~~~~~~~l~~m~~~f-----~~~~~~s~~~~~~aa----~~~lf~sc~~li~~~~e~~~~~~~~~~s~~--- 224 (1005)
T KOG2274|consen 157 DEVDVEEMFFVGPVSLAEMYRIF-----ALTIVYSIITRLGAA----RGKLFTSCLTLITNVEEVWAEHVKVFLSQI--- 224 (1005)
T ss_pred HHHHHHHHhcccccchhhhhhhh-----hhccccchhHHHHhh----hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---
Confidence 5554221 111222334443222 333444332211111 122223333222221111111111233334
Q ss_pred HHHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhh
Q 005769 271 AKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWE 343 (678)
Q Consensus 271 ~~a~stlLq~aw~~P~~~~E~~~~P~~~~~~D~s~lle~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~~We 343 (678)
+..|+.+|.+....+...-=+...-+..|.++....|..++ +++...+++..|.+--.+++-...|.
T Consensus 225 l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~------~~~~~~~~~~vw~~~~~~~~~yir~~ 291 (1005)
T KOG2274|consen 225 LNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLI------NPFMMGMFSIVWQTLEKILAVYVRES 291 (1005)
T ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhh------hHHHHhhhhHHHHHHHHHHhhhhhhh
Confidence 68888888777665543100111112355555555544332 34444556667777777776666665
No 97
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=42.80 E-value=26 Score=31.95 Aligned_cols=53 Identities=13% Similarity=0.338 Sum_probs=41.9
Q ss_pred cchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCccchhhHHHHHHHHHHhh
Q 005769 144 PVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGA 197 (678)
Q Consensus 144 PVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d~e~~~L~qll~~~vE~ 197 (678)
.||-..|.+|+.+...+| |..|+-++..++..++....--.....+|+.+.|-
T Consensus 3 ~i~~kl~~~l~~i~~~~~-P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eE 55 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDW-PQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEE 55 (148)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHC-hhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 378888999999999998 89999999999999888543333557777776665
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=42.56 E-value=17 Score=41.61 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=15.5
Q ss_pred CCCccCcccchHHHHHHHHHHHhh
Q 005769 583 DSEGDECEETEEEFLERYAKAAVN 606 (678)
Q Consensus 583 ~~ddde~eE~e~e~Ler~a~~A~~ 606 (678)
+.+||..+||.-|.--|+|+.-..
T Consensus 61 e~e~e~~~Eta~ekr~RlA~e~L~ 84 (479)
T KOG0299|consen 61 EEEDEFEEETAGEKRLRLAEEYLD 84 (479)
T ss_pred hhcccchhcchhHHHHHHHHHHHH
Confidence 345666677777777777765443
No 99
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=42.50 E-value=23 Score=42.17 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=9.9
Q ss_pred chhhHHHHHHHHHHHh
Q 005769 535 LLQDCYASLMEAAVQL 550 (678)
Q Consensus 535 ~l~~c~~slle~~~~l 550 (678)
-|..+++++++-=++|
T Consensus 899 nW~timksi~~DPi~F 914 (1001)
T COG5406 899 NWNTIMKSIMKDPISF 914 (1001)
T ss_pred cHHHHHHHHhcCcHHH
Confidence 4566666666665555
No 100
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=42.28 E-value=18 Score=38.22 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHhhhhhhcc
Q 005769 537 QDCYASLMEAAVQLKEVQEDE 557 (678)
Q Consensus 537 ~~c~~slle~~~~lke~~ee~ 557 (678)
..+...+-+++-.++|..++.
T Consensus 129 ~~~~~lvkDa~~El~E~~~~~ 149 (275)
T PF13324_consen 129 KQSRDLVKDALEELEEWDEEP 149 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344455556666677776655
No 101
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.84 E-value=1.6e+02 Score=36.07 Aligned_cols=122 Identities=17% Similarity=0.100 Sum_probs=75.8
Q ss_pred hhcccCccccCcchhHHHhhHHHHhhhhccC---CCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCC
Q 005769 86 SRVLPLYSVSVCLPYLVASANWILGELASCL---PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM 162 (678)
Q Consensus 86 ~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l---~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~ 162 (678)
+|++- .++++.--+|.|-|-++-.+.++- |+..+..+-.+++..|.|-. .-||..|+.||+-|=+....
T Consensus 88 ~hlLR--g~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre------p~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 88 YHLLR--GTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE------PNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHh--cccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC------chHHHHHHHHHHHHhcCCCC
Confidence 45544 335777789999999998888733 44455555556666666666 88999999999998764333
Q ss_pred CCChhhHHHHHHhhcCCccchhhHHHHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH
Q 005769 163 PPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 242 (678)
Q Consensus 163 pp~~~pLLq~i~~~i~~~d~e~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~ 242 (678)
+.- -...+|...++..+- .++ -+..+-++.|.+.++|-+|||+-+.-+|.
T Consensus 160 ee~--------------------~v~n~l~~liqnDpS---~EV-------RRaaLsnI~vdnsTlp~IveRarDV~~an 209 (892)
T KOG2025|consen 160 EEC--------------------PVVNLLKDLIQNDPS---DEV-------RRAALSNISVDNSTLPCIVERARDVSGAN 209 (892)
T ss_pred Ccc--------------------cHHHHHHHHHhcCCc---HHH-------HHHHHHhhccCcccchhHHHHhhhhhHHH
Confidence 311 112223333333211 111 22225556888888888888888877777
Q ss_pred HHH
Q 005769 243 AQS 245 (678)
Q Consensus 243 ~q~ 245 (678)
-++
T Consensus 210 Rrl 212 (892)
T KOG2025|consen 210 RRL 212 (892)
T ss_pred HHH
Confidence 443
No 102
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=40.73 E-value=15 Score=40.05 Aligned_cols=7 Identities=43% Similarity=0.824 Sum_probs=2.7
Q ss_pred HhhcCCC
Q 005769 478 LKKDEDG 484 (678)
Q Consensus 478 Lek~~~~ 484 (678)
|.|...|
T Consensus 39 L~kkdRG 45 (324)
T PF05285_consen 39 LHKKDRG 45 (324)
T ss_pred cCchhcC
Confidence 3443333
No 103
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=39.83 E-value=8.1 Score=42.28 Aligned_cols=6 Identities=50% Similarity=1.104 Sum_probs=2.2
Q ss_pred HHHHHH
Q 005769 327 ELLLVW 332 (678)
Q Consensus 327 ~L~~vw 332 (678)
+|=.+|
T Consensus 30 eLk~~W 35 (375)
T PF03153_consen 30 ELKQLW 35 (375)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 104
>PRK13266 Thf1-like protein; Reviewed
Probab=38.28 E-value=3.8e+02 Score=28.43 Aligned_cols=155 Identities=19% Similarity=0.152 Sum_probs=88.7
Q ss_pred hHhhh-hcccc-cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHhcCccchhhhhhhHHHHhhCCCCCcccchhh
Q 005769 353 CIKEI-VNLHS-KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVK 430 (678)
Q Consensus 353 ~i~e~-V~l~~-s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~~~p~a~~rACkl~h~lL~~~~~s~~~eg~~ 430 (678)
+++|+ |-+|= |+-.. |.. .|. |-=++.+.+..-|..|+...-+. ++-+++.++..++++ ..
T Consensus 29 vv~ELLVElHLl~~n~~-F~y--------Dpl----fAlGlvt~fd~fm~GY~Pee~~~-~IF~Alc~a~~~dp~---~~ 91 (225)
T PRK13266 29 VVDELLVELHLLSVNSD-FKY--------DPL----FALGLVTVFDRFMQGYRPEEHKD-SIFNALCQAVGFDPE---QL 91 (225)
T ss_pred HHHHHHHHHHHHHhccC-cee--------Cch----HHhhHHHHHHHHHcCCCChHHHH-HHHHHHHHHcCCCHH---HH
Confidence 45566 66664 33322 443 554 66788899999999997774443 378888888886655 33
Q ss_pred hhhHHHHHHHHHhhhhhccCCCCCchhHHHHHHhhhhccChHHHHHHHhhcCCCc-hhhHHHHHHhhhcCCCCCCCchhh
Q 005769 431 QSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGG-FALWGSALAFLCSSSLEPRLSLES 509 (678)
Q Consensus 431 d~~i~~f~~aA~~rl~~~~s~~~~l~KpLilvIssc~~ynP~lv~qiLek~~~~~-F~~W~saLa~~~~s~~~~~l~~es 509 (678)
..-+....+.|-+ .++..+..+|...+.+. =.+|....+- +.. ...+
T Consensus 92 r~dA~~l~~~a~~-------------------------~s~~~i~~~l~~~~~~~~~~l~~~l~~i-a~~------~~f~ 139 (225)
T PRK13266 92 RQDAERLLELAKG-------------------------KSLKEILSWLTQKALGEPGGLLATLLAI-ANN------SKFK 139 (225)
T ss_pred HHHHHHHHHHHhc-------------------------CCHHHHHHHHhccccccchhHHHHHHHH-hcC------CCCc
Confidence 3333333332222 23444555666554442 2244443332 111 2356
Q ss_pred hhHHHHHHHHHHHHHHhc---------------------cCCCCCcchhhHHHHHHHHHHHhhhhhhc
Q 005769 510 EIKLAVLTLAKVVERLLG---------------------LGNPGSSLLQDCYASLMEAAVQLKEVQED 556 (678)
Q Consensus 510 e~Kl~vl~L~~vie~Lls---------------------l~~~~~~~l~~c~~slle~~~~lke~~ee 556 (678)
.-++..+||.++++..-. ++....+-=-..++++|+.|-+.+++++|
T Consensus 140 YSRl~AIGL~~LLe~a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL~lYrsnLeKm~Qa~el~ee 207 (225)
T PRK13266 140 YSRLFAIGLYTLLEEAQPDLVKDEEKLNEALKDISEGLGLSKEKVEKDLDLYRSNLEKMEQALELIEE 207 (225)
T ss_pred hHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 778888888877754421 11110001146799999999999999884
No 105
>KOG4156 consensus Claspin, protein mediating phosphorylation and activation of Chk1 protein kinase in the DNA replication checkpoint response [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=37.91 E-value=65 Score=38.69 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=9.6
Q ss_pred cCccccchhh-HHHHhh
Q 005769 628 GSLDEVDQLK-VVASSI 643 (678)
Q Consensus 628 ~~LdevD~~~-~Vls~~ 643 (678)
+.+|+|-+-+ .+-+-+
T Consensus 1082 ~~~DeV~~sDeelq~Q~ 1098 (1329)
T KOG4156|consen 1082 DVIDEVLPSDEELQSQI 1098 (1329)
T ss_pred ccccccCCchHHHHHHH
Confidence 6888885554 333444
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=37.41 E-value=1.9e+02 Score=28.84 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=69.9
Q ss_pred hhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHH-HHHHHHHHhcccCC
Q 005769 60 GVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADV-YSSLLKALQMLDKG 138 (678)
Q Consensus 60 GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~-~~sll~al~dp~~~ 138 (678)
.++..++.|...|+++=..++..++ ..++-... .+..++|..|.=++-.+....+ ....+ ...+..++.+.+
T Consensus 72 ~A~~~l~~l~~~l~~~~~~~~~~~l-~~Ll~~~~--~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn-- 144 (228)
T PF12348_consen 72 TACQLLSDLARQLGSHFEPYADILL-PPLLKKLG--DSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKN-- 144 (228)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHH-HHHHHGGG-----HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S---
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHH-HHHHHHHc--cccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCC--
Confidence 5666777777777775333433333 34444444 5567999999999988887444 22345 566666666666
Q ss_pred CCCcCcchhhhhHHHHHHHhcCCC-CC------ChhhHHHHHHhhcCCccch
Q 005769 139 DTSCYPVRASAAGAIVGLLENDYM-PP------EWYPLLQVIVGRIGYEDEE 183 (678)
Q Consensus 139 ~~s~lPVRvsAa~Ai~sLie~~~~-pp------~~~pLLq~i~~~i~~~d~e 183 (678)
..||..++..|...++.... .+ .+..++..+.+.+.+.+.+
T Consensus 145 ----~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 145 ----PQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp ----HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HH
T ss_pred ----HHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHH
Confidence 89999999999999988871 11 1356888888888888854
No 107
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=37.21 E-value=15 Score=43.58 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=9.9
Q ss_pred HHHHHccccchhhhhhHHHHH
Q 005769 309 SIILSVSERNVIEELKLSELL 329 (678)
Q Consensus 309 ~il~~~t~~~~~~~~kis~L~ 329 (678)
..+|++|+-+.- --.+|++.
T Consensus 595 qF~rsit~rS~~-g~rms~~f 614 (1001)
T COG5406 595 QFLRSITSRSIR-GNRMSDLF 614 (1001)
T ss_pred hhhhheeeeecc-CccHHHHH
Confidence 455666665544 33344444
No 108
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=36.47 E-value=1.5e+02 Score=37.18 Aligned_cols=214 Identities=18% Similarity=0.251 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH--HHHHhhhhhhhhhhccccchhhhhh----hhHHHHHHHHHHH
Q 005769 206 IPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALAL--MAQSWENFLREEVELDQSSGKWESG----QAAIAKAFSALLQ 279 (678)
Q Consensus 206 lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa--~~q~~~~~~~de~~d~~~~~~~a~G----~~~~~~a~stlLq 279 (678)
-|+.++++++.+.+..+ ..++..|..-|++--. +..|.-..- .+-+. ...++ -.++.+.+++|++
T Consensus 568 NP~l~aKlvevl~~~~~---~~s~~~v~~v~~~~~~~~L~~~llr~y----v~ie~--tg~s~qfydKfnvr~~i~~i~~ 638 (943)
T KOG2042|consen 568 NPYLRAKLVEVLSMPKP---SLSFNAVSRVIEAHENGGLVPCLLRFY----VDIES--TGQSSQFYDKFNVRRNISEILE 638 (943)
T ss_pred ChHHHHHHHHHHhccCc---ccCchHHHHHHHhccccccchhhhhhe----eeeec--CCCchhHHHHhHHHhhHHHHHH
Confidence 39999999999985444 5555544433333222 111111111 11111 11222 3567899999999
Q ss_pred HhhcccCCCCc--cccC--C-C-----CcccccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhh---hcc
Q 005769 280 QAWLTHIQPLE--CEVS--A-P-----PSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWE---ETE 346 (678)
Q Consensus 280 ~aw~~P~~~~E--~~~~--P-~-----~~~~~D~s~lle~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~~We---e~e 346 (678)
.+|..|.-.++ +..- | + .+.+||...+|+|++..+.-.....+ .. .-++.|..=. +..
T Consensus 639 ~mw~~pa~~~~~~~~~~~~~~~f~rfvn~l~Nd~t~lLDE~l~~L~~i~~iq~-----~~----kn~~q~~~~~~~~~e~ 709 (943)
T KOG2042|consen 639 YMWQDPAYRGEFMDEAKDAPPVFVRFVNMLLNDATFLLDESLSELMEIHQIQP-----SG----KNIDQWTKLKREEREA 709 (943)
T ss_pred HHhcCccccchhhhhccccchHHHHHHHHHhhhHHHHHhHHHHHhhhhhhhhh-----hh----hhhhhccCCcHHHHHH
Confidence 99999964333 2222 2 2 28999999999999998876654422 22 1122232211 122
Q ss_pred ccchhhhHhhh----hcccc-cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHhcCccchhhhhhhHHHHhhCCC
Q 005769 347 DLSVFDCIKEI----VNLHS-KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPK 421 (678)
Q Consensus 347 d~~~fD~i~e~----V~l~~-s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~~~p~a~~rACkl~h~lL~~~~ 421 (678)
+.+-.---+.. +.+-+ +-++-|+++++.|.+=-.|+ .++.+..| .+|.-...+-+||..--...|+
T Consensus 710 ~~~~l~s~~r~art~~~la~et~~ll~~~tk~i~~~Fl~~e----lv~rla~M-----LN~nL~~lvGPK~~~Lkvkdp~ 780 (943)
T KOG2042|consen 710 KWGRLASDERQARTGLALANETIDLLHLLTKAIPEPFLLPE----LVERLAAM-----LNYNLSQLVGPKCSDLKVKDPE 780 (943)
T ss_pred HHhccccchhhhcccceeccchhhHHHHHHhhcchhhcchh----HHHHHHHH-----HhhhHHHhhCCcccccccCCcc
Confidence 22333222221 22333 66777888887776666663 55555443 3788888888888888888776
Q ss_pred -CCcccchhhhhhHHHHHHHH-Hhhhh
Q 005769 422 -YSFETEGVKQSLTISFSCAA-FSRFR 446 (678)
Q Consensus 422 -~s~~~eg~~d~~i~~f~~aA-~~rl~ 446 (678)
|.++.......+...|+++. ..+|-
T Consensus 781 ~y~fePk~ll~~i~~iYlnl~~~~~F~ 807 (943)
T KOG2042|consen 781 KYGFEPKQLLSQLSDIYLNLSSEPSFV 807 (943)
T ss_pred ccCCChHHHHHHHHHHHHhhccchhHH
Confidence 46665567777778888877 66663
No 109
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=36.41 E-value=39 Score=41.62 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=7.2
Q ss_pred cCccccchhhHHHH
Q 005769 628 GSLDEVDQLKVVAS 641 (678)
Q Consensus 628 ~~LdevD~~~~Vls 641 (678)
....+..+.+.|-.
T Consensus 101 ~~~e~p~~~~~~~~ 114 (895)
T KOG2076|consen 101 ETYEEPEGLKQFKG 114 (895)
T ss_pred cccccCchhhhhhh
Confidence 45555555554433
No 110
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=36.25 E-value=2.2e+02 Score=34.58 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=68.2
Q ss_pred HHHHHhcCCCCCC-----hhhHHHHHHhhcCCcc----chhhHHHHHHHHHHhhcccc-----------------ccccc
Q 005769 153 IVGLLENDYMPPE-----WYPLLQVIVGRIGYED----EENSILFELLSSVVGAANEN-----------------VADHI 206 (678)
Q Consensus 153 i~sLie~~~~pp~-----~~pLLq~i~~~i~~~d----~e~~~L~qll~~~vE~g~E~-----------------va~~l 206 (678)
++-++++-.++|+ -.-+...|++++|..+ .|-.++.-++--..|-.++. ...|+
T Consensus 523 ~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l 602 (975)
T COG5181 523 SRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHL 602 (975)
T ss_pred HHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcch
Confidence 5566666666653 2345566777776655 22223333444444433321 23466
Q ss_pred hHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhh--------------hhHHHH
Q 005769 207 PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESG--------------QAAIAK 272 (678)
Q Consensus 207 p~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G--------------~~~~~~ 272 (678)
+.||+-+ .++|-. +=|-+=.+|....+.++...-.--.. +.++..| ...|++
T Consensus 603 ~~ivSti----L~~L~~---k~p~vR~~aadl~~sl~~vlk~c~e~-------~~l~klg~iLyE~lge~ypEvLgsil~ 668 (975)
T COG5181 603 SMIVSTI----LKLLRS---KPPDVRIRAADLMGSLAKVLKACGET-------KELAKLGNILYENLGEDYPEVLGSILK 668 (975)
T ss_pred HHHHHHH----HHHhcC---CCccHHHHHHHHHHHHHHHHHhcchH-------HHHHHHhHHHHHhcCcccHHHHHHHHH
Confidence 6677655 787762 22444455666555554433211110 0022222 234688
Q ss_pred HHHHHHHHhhcc----cCCCCccccCCCC
Q 005769 273 AFSALLQQAWLT----HIQPLECEVSAPP 297 (678)
Q Consensus 273 a~stlLq~aw~~----P~~~~E~~~~P~~ 297 (678)
||+.|--..-.- |..++=+++.||.
T Consensus 669 Ai~~I~sv~~~~~mqpPi~~ilP~ltPIL 697 (975)
T COG5181 669 AICSIYSVHRFRSMQPPISGILPSLTPIL 697 (975)
T ss_pred HHHHHhhhhcccccCCchhhccccccHhh
Confidence 888887665554 5666667777763
No 111
>KOG3779 consensus Homeobox transcription factor prospero [Transcription]
Probab=35.49 E-value=76 Score=36.72 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=17.9
Q ss_pred CCCCCCCccCcccchHHHHHHH
Q 005769 579 DDDEDSEGDECEETEEEFLERY 600 (678)
Q Consensus 579 ddd~~~ddde~eE~e~e~Ler~ 600 (678)
|.-+++|+++|++..+-|++|-
T Consensus 290 D~V~~Sd~~~~~~~~~~~i~r~ 311 (737)
T KOG3779|consen 290 DSVGRSDNEMCELDPGQFIDRA 311 (737)
T ss_pred chhcccchhcCCCChHHHHHHH
Confidence 4444779999999999999984
No 112
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=35.35 E-value=12 Score=36.96 Aligned_cols=9 Identities=44% Similarity=0.593 Sum_probs=4.7
Q ss_pred hhHHHHhhh
Q 005769 636 LKVVASSIE 644 (678)
Q Consensus 636 ~~~Vls~~~ 644 (678)
.+.+...++
T Consensus 70 ~kmm~eS~~ 78 (170)
T PF04050_consen 70 QKMMAESLE 78 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555553
No 113
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=35.09 E-value=62 Score=22.64 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=19.3
Q ss_pred HHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhc
Q 005769 101 LVASANWILGELASCLPEDISADVYSSLLKALQM 134 (678)
Q Consensus 101 LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~d 134 (678)
+|..|.|.+|++.. ......|+++|.|
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhcC
Confidence 58899999999987 4556666666654
No 114
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=34.49 E-value=13 Score=44.78 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=0.0
Q ss_pred HHHHHH
Q 005769 520 KVVERL 525 (678)
Q Consensus 520 ~vie~L 525 (678)
.||+++
T Consensus 386 ~v~~ky 391 (713)
T PF03344_consen 386 EVIEKY 391 (713)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 115
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=34.04 E-value=30 Score=40.39 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=10.6
Q ss_pred chhhHHHHHHhhhcCCC
Q 005769 485 GFALWGSALAFLCSSSL 501 (678)
Q Consensus 485 ~F~~W~saLa~~~~s~~ 501 (678)
+...||+++......++
T Consensus 189 ~~Nt~~s~m~a~~~~~~ 205 (555)
T KOG2393|consen 189 VMNTWFSLMEAGNSDSY 205 (555)
T ss_pred hHHHHHHHHHHhccccc
Confidence 44468888877555543
No 116
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=33.56 E-value=4.3e+02 Score=27.65 Aligned_cols=156 Identities=16% Similarity=0.127 Sum_probs=88.3
Q ss_pred hHhhh-hcccc-cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHhcCccchhhhhhhHHHHhhCCCCCcccchhh
Q 005769 353 CIKEI-VNLHS-KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVK 430 (678)
Q Consensus 353 ~i~e~-V~l~~-s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~~~p~a~~rACkl~h~lL~~~~~s~~~eg~~ 430 (678)
+++|+ |-+|= ||-.. |-. .|. |-=++.+.+.+-|..|+.+.-+. ++-+++.++..++++ ..
T Consensus 27 vv~ELLVE~HLl~~n~~-f~y--------D~l----fAlGlvt~fd~fm~GY~Pee~~~-~IF~Alc~a~~~dp~---~~ 89 (206)
T PLN03060 27 VIQELLVQQHLMRYNAT-YKY--------DPI----FALGFVTVYDQLMDGYPNATDRD-AIFKAYIEALGEDPD---QY 89 (206)
T ss_pred HHHHHHHHHHHHHhccC-cee--------Cch----HHhhHHHHHHHHHcCCCChHHHH-HHHHHHHHHcCCCHH---HH
Confidence 45566 66664 33332 443 554 66788899999999997774443 378888888886655 33
Q ss_pred hhhHHHHHHHHHhhhhhccCCCCCchhHHHHHHhhhhccChHHHHHHHhhcCCCchhhHHHHHHhhhcCCCCCCCchhhh
Q 005769 431 QSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESE 510 (678)
Q Consensus 431 d~~i~~f~~aA~~rl~~~~s~~~~l~KpLilvIssc~~ynP~lv~qiLek~~~~~F~~W~saLa~~~~s~~~~~l~~ese 510 (678)
..-+....+.|-+ .++..+..+|.+.+.+.-.+|..+-+.. +=...|.
T Consensus 90 r~dA~~l~~~a~~-------------------------~s~~~l~~~l~~~~~~~~~l~~~~~~~~-------~~~~f~Y 137 (206)
T PLN03060 90 RKDAKKLEEWASS-------------------------QSASGIADFNSGDGEVEAVLKDIAERAA-------GKTKFHY 137 (206)
T ss_pred HHHHHHHHHHHhc-------------------------CCHHHHHHHHhcccccchHHHHHHHHhh-------cCCCcch
Confidence 3333333332221 2444555666666633222333222221 1112467
Q ss_pred hHHHHHHHHHHHHHHh--------------ccCCCCCcchhhHHHHHHHHHHHhhhhhhcc
Q 005769 511 IKLAVLTLAKVVERLL--------------GLGNPGSSLLQDCYASLMEAAVQLKEVQEDE 557 (678)
Q Consensus 511 ~Kl~vl~L~~vie~Ll--------------sl~~~~~~~l~~c~~slle~~~~lke~~ee~ 557 (678)
-++..+||.++++..- +++....+-=-..++++|+.|-|.+++++|.
T Consensus 138 SRl~AIGL~~LLe~a~~~d~~~l~~l~~~L~ls~~kv~kDL~lYrsnLeKm~qa~el~ee~ 198 (206)
T PLN03060 138 SRFFAIGLFRLLECAKASDPAVLEKLSKALNVSKRSVDRDLDVYRNLLSKLAQAKELIKEY 198 (206)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHH
Confidence 7788888887775431 1111111111467999999999999998853
No 117
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.95 E-value=83 Score=36.88 Aligned_cols=103 Identities=25% Similarity=0.324 Sum_probs=73.9
Q ss_pred cCcchhHHHhhHHHHhhhhccCCC----CccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCC---hh
Q 005769 95 SVCLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE---WY 167 (678)
Q Consensus 95 ~~~sp~LrA~A~Wv~gela~~l~e----~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~---~~ 167 (678)
.+++..++-.|.|.+|-.|.-.|. .....+...||..|..++. +.-.-.+.-+|.+|-++..-+|. +.
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-----~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-----LSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-----hHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 467779999999999999985551 2222345556666665552 56777899999999999975555 67
Q ss_pred hHHHHHHhhcCCccchhhHH---HHHHHHHHhhccccccc
Q 005769 168 PLLQVIVGRIGYEDEENSIL---FELLSSVVGAANENVAD 204 (678)
Q Consensus 168 pLLq~i~~~i~~~d~e~~~L---~qll~~~vE~g~E~va~ 204 (678)
++|.+++.++-..|.+ +| --.++-....+||.+-.
T Consensus 237 ~iLp~L~~ll~~~D~~--Vl~Da~WAlsyLsdg~ne~iq~ 274 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEE--VLTDACWALSYLTDGSNEKIQM 274 (514)
T ss_pred HHHHHHHHHHhcCCHH--HHHHHHHHHHHHhcCChHHHHH
Confidence 8999999999988866 77 44455555666666544
No 118
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=31.94 E-value=1.6e+02 Score=37.18 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=70.8
Q ss_pred HHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC-CChhhHHHHHHhhcCCcc--c
Q 005769 106 NWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP-PEWYPLLQVIVGRIGYED--E 182 (678)
Q Consensus 106 ~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p-p~~~pLLq~i~~~i~~~d--~ 182 (678)
+.++..|+.++|+ -+.+++++|+..-.-. ...||=.|..||+.|.- +.+ .-..-+++.++++.+.-. +
T Consensus 158 ~d~lsr~g~ll~~-----fh~~il~~l~~ql~s~--R~aVrKkai~~l~~la~--~~~~~ly~~li~~Ll~~L~~~~q~~ 228 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPN-----FHLSILKCLLPQLQSP--RLAVRKKAITALGHLAS--SCNRDLYVELIEHLLKGLSNRTQMS 228 (1233)
T ss_pred HHHHHhhcccCcc-----hHHHHHHHHhhcccCh--HHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCCCCchH
Confidence 3455566668873 4556666665444322 48999999999999864 444 345678889999997776 5
Q ss_pred hhhHHHHHHHHHHhhccccccccchHHHHHH
Q 005769 183 ENSILFELLSSVVGAANENVADHIPYIVSSL 213 (678)
Q Consensus 183 e~~~L~qll~~~vE~g~E~va~~lp~iV~~~ 213 (678)
.-..+.|.+..+--...-.+..|++.||-.+
T Consensus 229 ~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v 259 (1233)
T KOG1824|consen 229 ATRTYIQCLAAICRQAGHRFGSHLDKIVPLV 259 (1233)
T ss_pred HHHHHHHHHHHHHHHhcchhhcccchhhHHH
Confidence 5567788898888887778888998888544
No 119
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=31.67 E-value=16 Score=40.50 Aligned_cols=42 Identities=31% Similarity=0.359 Sum_probs=25.3
Q ss_pred CcccccHHHHHHHHHHHc------cccch-hhhhhHHHHHHHHHH-HHhh
Q 005769 297 PSCIDDSSMLLRSIILSV------SERNV-IEELKLSELLLVWAD-LIGD 338 (678)
Q Consensus 297 ~~~~~D~s~lle~il~~~------t~~~~-~~~~kis~L~~vwa~-~ia~ 338 (678)
|+|.+..+.||+.|+.-+ .|... .-+-.+++|=.+|.. ||++
T Consensus 1 ~~~~~~v~kvY~~VIeDVI~~vRe~F~~~GiDeqvL~eLk~lWe~Kl~qs 50 (348)
T KOG2652|consen 1 MASTNTVSKVYESVIEDVINNVREDFLENGIDEQVLSELKNLWETKLIQS 50 (348)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhh
Confidence 468888888888555432 12222 224457788888875 4444
No 120
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=31.23 E-value=1.7e+02 Score=30.53 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=39.1
Q ss_pred hhHHHHHHHhcCCCCCChhhHHHHHHhhcCCccchhhHHHHHHHHHHhh
Q 005769 149 AAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGA 197 (678)
Q Consensus 149 Aa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d~e~~~L~qll~~~vE~ 197 (678)
|+-.+..+++.++.-|++.+.++.+.+-.|.+.++-++..-+++.+.|-
T Consensus 29 a~~~lp~fv~e~~e~~~v~~~v~~v~~e~g~~~s~E~lva~~~~wiaed 77 (229)
T COG4229 29 AARKLPDFVRENTEDSEVKKIVDEVLSEFGIANSEEALVALLLEWIAED 77 (229)
T ss_pred HHHHhHHHHHhhccCChhhHHHHHHHHHhCccchHHHHHHHHHHHHhcc
Confidence 6778999999999999999999999999999995544444444666553
No 121
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=31.17 E-value=55 Score=38.88 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=4.4
Q ss_pred hhhHHHHHHh
Q 005769 486 FALWGSALAF 495 (678)
Q Consensus 486 F~~W~saLa~ 495 (678)
..+|-..+..
T Consensus 158 ~~lwr~~ie~ 167 (600)
T TIGR01651 158 VDLWRNDIEA 167 (600)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 122
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=30.29 E-value=45 Score=39.02 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhhccCCCCCchhHHHHHHhhhhc
Q 005769 434 TISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYL 468 (678)
Q Consensus 434 i~~f~~aA~~rl~~~~s~~~~l~KpLilvIssc~~ 468 (678)
++-+-+--..|++. +..|..+++++-+-.|
T Consensus 176 ~EEaee~~~~r~k~-----~Nt~~s~m~a~~~~~~ 205 (555)
T KOG2393|consen 176 AEEAEEWFMERFKV-----MNTWFSLMEAGNSDSY 205 (555)
T ss_pred HHHHHHHHHHhhhh-----HHHHHHHHHHhccccc
Confidence 44555666778876 3388889998876644
No 123
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=29.90 E-value=25 Score=38.90 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=13.8
Q ss_pred ccc-chhhHHHHhhhhhhhhc
Q 005769 631 DEV-DQLKVVASSIERYHNVI 650 (678)
Q Consensus 631 dev-D~~~~Vls~~~k~H~~l 650 (678)
||| |.+.||+-..||-||.=
T Consensus 298 dDvsdt~nvVvCqyDKV~RsK 318 (348)
T KOG2652|consen 298 DDVSDTQNVVVCQYDKVNRSK 318 (348)
T ss_pred ccccccceeEEEeeeeecccc
Confidence 444 36778888888888744
No 124
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=29.77 E-value=59 Score=40.06 Aligned_cols=51 Identities=25% Similarity=0.131 Sum_probs=42.7
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
.+.|.+|..|+=.+|++.. ..+...|.++|.|++ ..||..|+.||+.+.+.
T Consensus 632 D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d------~~VR~~Aa~aL~~l~~~ 682 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGA------AAVRRAAAEGLRELVEV 682 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCC------HHHHHHHHHHHHHHHhc
Confidence 7889999999999988752 346778889998888 88999999999988653
No 125
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=29.69 E-value=27 Score=36.98 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=6.4
Q ss_pred HHHHHHHHHhc
Q 005769 658 SQLISKFLKAY 668 (678)
Q Consensus 658 ~~l~~~f~~~~ 668 (678)
++.=.+|+++|
T Consensus 232 SdfH~kFl~Ky 242 (244)
T PF04889_consen 232 SDFHKKFLNKY 242 (244)
T ss_pred cHHHHHHHHHh
Confidence 44555666665
No 126
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=29.55 E-value=4.1e+02 Score=28.32 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=77.0
Q ss_pred CcchhHHHhhHHHHhhhhccCCCC-ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC-CChhhHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPED-ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP-PEWYPLLQVI 173 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~-~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p-p~~~pLLq~i 173 (678)
+..+-.|+||-.++++.-.-+|.. ...+--+.++.=..+-- .+-+.=..|..|+..|++..+.+ .....+++.+
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl----~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l 85 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL----DDHACVQPALKGLLALVKMKNFSPESAVKILRSL 85 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh----ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHH
Confidence 567789999988888776644422 22222222222222211 12233334477889999888755 5667888888
Q ss_pred HhhcCCcc---chhhHHHHHHHHHHhhccccccccc-hHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhh
Q 005769 174 VGRIGYED---EENSILFELLSSVVGAANENVADHI-PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 247 (678)
Q Consensus 174 ~~~i~~~d---~e~~~L~qll~~~vE~g~E~va~~l-p~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~ 247 (678)
++.+.... ++-...+++|..+++.-.+.+ ..+ +.+|..|...| .= |-=||+|-..|.-+-.+.+.|+
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~----~g--EkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLI----DG--EKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHh----cc--CCCHHHHHHHHHHHHHHHHhcc
Confidence 88775544 444455888888887733333 112 33333332222 21 2225555555555555555444
No 127
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=29.31 E-value=14 Score=45.92 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=4.5
Q ss_pred HhhHHHHHHHHH
Q 005769 388 IEGIGAFLSEAI 399 (678)
Q Consensus 388 ie~l~~fvs~ai 399 (678)
-..+-.|+..++
T Consensus 580 ~lrM~~~Le~i~ 591 (1128)
T KOG2051|consen 580 KLRMRVFLEQIK 591 (1128)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 128
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=28.64 E-value=2.8e+02 Score=26.47 Aligned_cols=120 Identities=27% Similarity=0.317 Sum_probs=58.6
Q ss_pred HHHhhHHHHhhhhcc------CCC--CccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHH
Q 005769 101 LVASANWILGELASC------LPE--DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQV 172 (678)
Q Consensus 101 LrA~A~Wv~gela~~------l~e--~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~ 172 (678)
-+.-|||++.++... ..+ .....-+..++..+.+-. +| +-.|=--|..+++++..| +.
T Consensus 13 ~k~~anwi~~el~~~l~~~~~~~~~~~i~~~~l~~li~l~~~~~---Is----~~~ak~ll~~~~~~~~~~-------~~ 78 (148)
T PF02637_consen 13 PKLAANWILNELLGLLNKKGLDIEDSPISPEHLAELINLLEDGK---IS----KKSAKELLRELLENGKSP-------EE 78 (148)
T ss_dssp HHHHHHHHHTHHHHHHHHHT--TTTSSSTHHHHHHHHHHHHTTS---SG----HHHHHHHHHHHHHHTS-H-------HH
T ss_pred HHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHHHHHHHcCC---CC----HHHHHHHHHHHHHcCCCH-------HH
Confidence 466789999888752 121 245566666666555443 22 122334456666553333 22
Q ss_pred HHhhcCCcc-chhhHHHHHHHHHHhhccccccccc---hHHHHHHHHHHHhcCCCCCCChhHHHHHHH
Q 005769 173 IVGRIGYED-EENSILFELLSSVVGAANENVADHI---PYIVSSLVAAISKHMHPSSEPWPQVVERGF 236 (678)
Q Consensus 173 i~~~i~~~d-~e~~~L~qll~~~vE~g~E~va~~l---p~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~ 236 (678)
++..-+-.- ++...|.++...+++.-++.|.... .-++..|.++++|.+---++ |+.|.+.|
T Consensus 79 ii~~~~l~~i~d~~el~~~v~~vi~~n~~~v~~~~~Gk~k~~~~LvGqvMk~t~G~ad--p~~v~~~l 144 (148)
T PF02637_consen 79 IIEENGLWQISDEEELEALVEEVIAENPKEVEDYRNGKKKAIGFLVGQVMKETKGRAD--PKEVKELL 144 (148)
T ss_dssp HHHHTT---B--CCHHHHHHHHHHHC-HHHHHHHCTT-TTCCHHHHHHHHHCTTS-C---HHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcChHHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Confidence 332222211 2233566666666665443332222 23444566777887776666 66666444
No 129
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=28.01 E-value=89 Score=35.64 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=48.3
Q ss_pred CcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCccchhhHHHH----HHHHHHhhccccccccchHHHHHHHHHHH
Q 005769 143 YPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFE----LLSSVVGAANENVADHIPYIVSSLVAAIS 218 (678)
Q Consensus 143 lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d~e~~~L~q----ll~~~vE~g~E~va~~lp~iV~~~~~~~~ 218 (678)
+=+||.|+.| +.+|.-+..|+..-|++.-++..|..|+++ .|.+ .+...++- +...-|--.+|+...+|
T Consensus 288 ~~~~V~Aa~A-~A~v~l~~lP~KLnPiIrpLMdSIK~Een~--~LQ~rsA~slA~Li~~----~~~rkp~PndKIvkNLc 360 (441)
T PF12054_consen 288 RDVRVLAAAA-SALVALGGLPKKLNPIIRPLMDSIKREENE--LLQQRSAESLARLIQL----CVDRKPCPNDKIVKNLC 360 (441)
T ss_pred HHHHHHHHHH-HHHHHhccCCCCccHHHHHHHHHhhccccH--HHHHHHHHHHHHHHHH----HhCCCCCCcHHHHHHHh
Confidence 4456655533 334445788999999999999999999977 7743 34444444 55555666667766667
Q ss_pred hcC
Q 005769 219 KHM 221 (678)
Q Consensus 219 k~l 221 (678)
++|
T Consensus 361 ~fl 363 (441)
T PF12054_consen 361 TFL 363 (441)
T ss_pred hhh
Confidence 776
No 130
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=27.60 E-value=87 Score=34.02 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhccCCC
Q 005769 512 KLAVLTLAKVVERLLGLGNP 531 (678)
Q Consensus 512 Kl~vl~L~~vie~Llsl~~~ 531 (678)
|+.+|.|.-+.--||..+..
T Consensus 6 ~~~ll~ll~~p~~l~~~~~~ 25 (285)
T PF03896_consen 6 RLILLALLVFPATLLSFGGG 25 (285)
T ss_pred hHHHHHHHHHHHHHHccCCC
Confidence 56666666555555554443
No 131
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=26.82 E-value=40 Score=34.25 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=10.8
Q ss_pred ccccCcHHHHHHHHHhchhh
Q 005769 652 QGQTLSSQLISKFLKAYPQL 671 (678)
Q Consensus 652 ~~q~lp~~l~~~f~~~~p~~ 671 (678)
+.-++|.. .|.+.|||-
T Consensus 156 ~~~gmpR~---~Fi~~f~gn 172 (211)
T PF04546_consen 156 RRAGMPRK---EFIKSFPGN 172 (211)
T ss_dssp TTTT--HH---HCCCCCTTT
T ss_pred HHhCCCHH---HHHHHccCc
Confidence 55566777 788888874
No 132
>PRK04964 hypothetical protein; Provisional
Probab=26.67 E-value=1.3e+02 Score=26.06 Aligned_cols=54 Identities=28% Similarity=0.299 Sum_probs=39.6
Q ss_pred HHHHhhhhc-c--CCCCccHHHHHHHHHHHhcccCCCCCcCc--chhhhhHHHHHHHhcCC
Q 005769 106 NWILGELAS-C--LPEDISADVYSSLLKALQMLDKGDTSCYP--VRASAAGAIVGLLENDY 161 (678)
Q Consensus 106 ~Wv~gela~-~--l~e~~~~~~~~sll~al~dp~~~~~s~lP--VRvsAa~Ai~sLie~~~ 161 (678)
|-++-++++ + =++.-..+..++++|+|-+--+++ .|| ||=.||+|-++|+=-+|
T Consensus 5 CelvR~~ya~IgSGd~gYiP~Ai~ca~k~L~~IAad~--~Lp~~vRe~AAfAAANLliSD~ 63 (66)
T PRK04964 5 CELVRKRYAEIGSGDLGYVPDALGCVLKALNEIAADE--ALPESVREKAAYAAANLLVSDY 63 (66)
T ss_pred HHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHHHHhhhc
Confidence 444444443 1 223355678899999999888887 576 89999999999987766
No 133
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=26.34 E-value=44 Score=35.26 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=3.9
Q ss_pred HHhhCCCC
Q 005769 415 TLLHVPKY 422 (678)
Q Consensus 415 ~lL~~~~~ 422 (678)
++|..|+|
T Consensus 94 vILlsc~Y 101 (279)
T COG5137 94 VILLSCRY 101 (279)
T ss_pred EEEEEEee
Confidence 34555554
No 134
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.00 E-value=1e+02 Score=34.84 Aligned_cols=58 Identities=29% Similarity=0.154 Sum_probs=43.5
Q ss_pred hhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 86 SRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 86 ~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
..+.+.+. ...|++|+.+-=.+|.. ..+.+..++++|.+++ +.||..|+.+|+.+=..
T Consensus 120 ~~L~~~L~--~~~p~vR~aal~al~~r--------~~~~~~~L~~~L~d~d------~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 120 PWLEPLLA--ASEPPGRAIGLAALGAH--------RHDPGPALEAALTHED------ALVRAAALRALGELPRR 177 (410)
T ss_pred HHHHHHhc--CCChHHHHHHHHHHHhh--------ccChHHHHHHHhcCCC------HHHHHHHHHHHHhhccc
Confidence 55667666 78889998877666551 1235778889998887 99999999999886543
No 135
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=25.94 E-value=58 Score=37.76 Aligned_cols=6 Identities=0% Similarity=-0.025 Sum_probs=2.3
Q ss_pred hhhccc
Q 005769 647 HNVIMQ 652 (678)
Q Consensus 647 H~~l~~ 652 (678)
|..|.|
T Consensus 336 ~~eldR 341 (620)
T COG4547 336 EAELDR 341 (620)
T ss_pred HHHHHH
Confidence 334433
No 136
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.38 E-value=38 Score=34.70 Aligned_cols=10 Identities=20% Similarity=0.096 Sum_probs=4.2
Q ss_pred hhHHHHHHHH
Q 005769 510 EIKLAVLTLA 519 (678)
Q Consensus 510 e~Kl~vl~L~ 519 (678)
|-|+|.=++-
T Consensus 92 e~~vCAKC~k 101 (227)
T KOG3241|consen 92 EQKVCAKCCK 101 (227)
T ss_pred HHHHHHHHhc
Confidence 3344444433
No 137
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=25.27 E-value=66 Score=34.74 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=9.1
Q ss_pred HHHHhhhhccChHHHH
Q 005769 460 VLAISSCYLCYPAVVE 475 (678)
Q Consensus 460 ilvIssc~~ynP~lv~ 475 (678)
++-|.--++|-|..+.
T Consensus 90 LeQIde~Ll~Wp~~~~ 105 (303)
T KOG3064|consen 90 LEQIDEQLLYWPKYVI 105 (303)
T ss_pred HHHHHHHHhcchHHHH
Confidence 4555666666665543
No 138
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.25 E-value=2.4e+02 Score=29.99 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=55.8
Q ss_pred hHHHHHH-hhChHHHHHHHHhhcccCccc-cCcchhHHHhhHHHHhhhhccCCCCc---------cHHHHHHHHHHHh--
Q 005769 67 GLQEFLR-EQKSEFTANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPEDI---------SADVYSSLLKALQ-- 133 (678)
Q Consensus 67 ~L~~~Lk-~~~k~~~~~l~~~rV~P~~~~-~~~sp~LrA~A~Wv~gela~~l~e~~---------~~~~~~sll~al~-- 133 (678)
.++-++. +.+...++...-.-+-|..++ |..+|-.|.++|-++..|-...+... ....++++...|.
T Consensus 99 ~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~L 178 (282)
T PF10521_consen 99 VLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYL 178 (282)
T ss_pred HHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcC
Confidence 5555555 445556665555555555554 77799999999999999998555433 4445555555555
Q ss_pred ---cccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 134 ---MLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 134 ---dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
-|..+ .+.+=..|-.||..|+...
T Consensus 179 P~~tp~~~---s~~Ll~~ay~~L~~L~~~~ 205 (282)
T PF10521_consen 179 PPITPEDE---SLELLQAAYPALLSLLKTQ 205 (282)
T ss_pred CCCCCchh---hHHHHHHHHHHHHHHHHhh
Confidence 01111 2555555666777776643
No 139
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=25.16 E-value=2.5e+02 Score=33.49 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC--CCCCChhhHHHHHHhhcCCcc-chhhHHHHHHHHHHh
Q 005769 120 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVG 196 (678)
Q Consensus 120 ~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~--~~pp~~~pLLq~i~~~i~~~d-~e~~~L~qll~~~vE 196 (678)
-...++-+++...-|.. --||=.|..|+..+.++- |+.+.++|-+ +..+-+.. -......|++..|++
T Consensus 213 yiv~~lp~il~~~~d~~------~~Vr~Aa~~a~kai~~~~~~~aVK~llpsl---l~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKI------NKVREAAVEAAKAIMRCLSAYAVKLLLPSL---LGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred hHHhhHHHHHHHhhccc------hhhhHHHHHHHHHHHHhcCcchhhHhhhhh---HHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44455666666665555 567777777777777653 4444444433 22222222 345567899999999
Q ss_pred hccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH
Q 005769 197 AANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 242 (678)
Q Consensus 197 ~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~ 242 (678)
..+.-+...+|.||-++-+.| . ++-+++=+.|.++|-.+
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl----~---DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVL----W---DTKPEVRKAGIETLLKF 322 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHH----c---cCCHHHHHHHHHHHHHH
Confidence 999999999999999994444 7 77788765444444333
No 140
>PF07093 SGT1: SGT1 protein; InterPro: IPR010770 This family consists of several eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known to suppress GCR2 and is highly expressed in the muscle and heart. The function of this family is unknown although it has been speculated that SGT1 may be functionally analogous to the Gcr2p protein of Saccharomyces cerevisiae which is known to be a regulatory factor of glycolytic gene expression [].
Probab=25.07 E-value=2.3e+02 Score=33.49 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=12.4
Q ss_pred CccCcccchHHHHHHHHHHHhhhh
Q 005769 585 EGDECEETEEEFLERYAKAAVNLE 608 (678)
Q Consensus 585 ddde~eE~e~e~Ler~a~~A~~le 608 (678)
++.+-+-++++|++. -+.+-++.
T Consensus 470 ~d~~v~fD~d~F~~~-l~~~Lg~~ 492 (589)
T PF07093_consen 470 EDEDVSFDEDEFLKM-LREMLGLP 492 (589)
T ss_pred ccCccccCHHHHHHH-HHHHcCCC
Confidence 344444567778774 34444543
No 141
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=24.91 E-value=2.3e+02 Score=29.98 Aligned_cols=52 Identities=29% Similarity=0.241 Sum_probs=37.1
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHh-cccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ-MLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~-dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
..++.+|..|...+|++.. ...+..+++.|. +++ ..||..|+.||+.+-...
T Consensus 85 d~~~~vr~~a~~aLg~~~~-------~~a~~~li~~l~~d~~------~~vR~~aa~aL~~~~~~~ 137 (335)
T COG1413 85 DEDPRVRDAAADALGELGD-------PEAVPPLVELLENDEN------EGVRAAAARALGKLGDER 137 (335)
T ss_pred CCCHHHHHHHHHHHHccCC-------hhHHHHHHHHHHcCCc------HhHHHHHHHHHHhcCchh
Confidence 5666888888887776653 334555666666 566 999999999988765444
No 142
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.53 E-value=3.4e+02 Score=30.32 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=90.1
Q ss_pred HHHHHHHHhhhhhhhhccccchhhhHhhhhccccc---------------ccccceeeccCCCCCCCCCCchhHHhhHHH
Q 005769 329 LLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSK---------------YELKNFIVRQMPPPPAPPVPPQSIIEGIGA 393 (678)
Q Consensus 329 ~~vwa~~ia~w~~Wee~ed~~~fD~i~e~V~l~~s---------------~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~ 393 (678)
+.....+....++|.-.+...+.++++-...-+.. .+...|.....-..... ++.+..-|.+
T Consensus 167 ~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~d 243 (379)
T PF09670_consen 167 YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQ---KKLYYALLAD 243 (379)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccc---cccHHHHHHH
Confidence 56677777777777766666777777765322111 12222222111111111 1114444455
Q ss_pred HHHHHHh-----cCccchhhhhhhHHHHhhCC--CCCcccchhhhhhHHHHHHHHHhhhhhccCCCCC--chhHHHHHHh
Q 005769 394 FLSEAIL-----QYPSATWRACSCVHTLLHVP--KYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSS--LWKPVVLAIS 464 (678)
Q Consensus 394 fvs~ai~-----~~p~a~~rACkl~h~lL~~~--~~s~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~~--l~KpLilvIs 464 (678)
.+-.|.- .|.++..|.=|+.|.++|.. +|.+.+...- +.+..=+..-+++......... .--+|+....
T Consensus 244 Ll~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~t~~~~--~~~~~pe~lr~~~~~~~~~~~~~~~~l~L~~~y~ 321 (379)
T PF09670_consen 244 LLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGIDTSDPD--LLEKLPEALRDRYERKRGDKGFGKIKLGLFEAYE 321 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcc--ccccchHHHHHHHHHHhccCCccceeecHHHHHH
Confidence 4444443 78888888888888877643 3333322222 2222222222333222111111 1111333322
Q ss_pred hhhccChHHHHHHHhhcCCCch-------hhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhc
Q 005769 465 SCYLCYPAVVEGILKKDEDGGF-------ALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLG 527 (678)
Q Consensus 465 sc~~ynP~lv~qiLek~~~~~F-------~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Lls 527 (678)
.|...+.... ...-..+.....|=+.|||...+++..- .|..+++.|+.
T Consensus 322 ------------LL~~l~d~l~~~~~~~~~~l~~~~~~RN~SILAHGf~~vs~~~~e--~l~~~~~~l~~ 377 (379)
T PF09670_consen 322 ------------LLKALGDPLGQRFYDNLNKLKGLLQKRNQSILAHGFKPVSEEDYE--ELRDVVEELIN 377 (379)
T ss_pred ------------HHHHcCCHHHHHHHHHHHHHHHHHHHhcccchhcCCCcCCHHHHH--HHHHHHHHHHh
Confidence 4444444432 3345666777778889998888887766 66677666643
No 143
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=24.46 E-value=78 Score=37.61 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=13.5
Q ss_pred ccchHHHHHHHHHHHhhhhcC
Q 005769 590 EETEEEFLERYAKAAVNLENN 610 (678)
Q Consensus 590 eE~e~e~Ler~a~~A~~le~g 610 (678)
||+...|..+.+++++..+..
T Consensus 564 ee~~~~~~~k~~k~~a~vkrr 584 (703)
T KOG2321|consen 564 EETRKLYERKMEKHAAAVKRR 584 (703)
T ss_pred hhhhHHHHHHHHHHHHHHHhH
Confidence 466667777777666666443
No 144
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.88 E-value=8.4e+02 Score=31.67 Aligned_cols=245 Identities=19% Similarity=0.160 Sum_probs=135.0
Q ss_pred hhhhhccchhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhcc-----CCCCccHHHH
Q 005769 51 HSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-----LPEDISADVY 125 (678)
Q Consensus 51 ~s~~~~~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~-----l~e~~~~~~~ 125 (678)
+++...-+.-+|-..-++..++.+ +++..+. -|.|.+- ...++-++.||--+++++... +-++..-++|
T Consensus 626 ~s~~~~~~~slLdl~~~~a~~~~e---~~vs~l~--~v~~~~e-~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~ 699 (1176)
T KOG1248|consen 626 ESVASFKTLSLLDLLIALAPVQTE---SQVSKLF--TVDPEFE-NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIF 699 (1176)
T ss_pred hhhhhHHHHHHHHHHHhhhccccc---hhHHHHH--HhhHHhh-ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Confidence 344555566777777777776655 3444554 7888877 445889999999999999987 5556778899
Q ss_pred HHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHH-----HHHHhhcCCccch-hhHHHHHHH------H
Q 005769 126 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLL-----QVIVGRIGYEDEE-NSILFELLS------S 193 (678)
Q Consensus 126 ~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLL-----q~i~~~i~~~d~e-~~~L~qll~------~ 193 (678)
+++++.+..-. =|+|.++--.|-.+++-.- .+...++ -+|+.. .+.+.. -+.-|++|- .
T Consensus 700 n~L~ds~qs~~------~~~~~~rl~~L~~L~~~~~--~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~ 770 (1176)
T KOG1248|consen 700 NSLLDSFQSSS------SPAQASRLKCLKRLLKLLS--AEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQS 770 (1176)
T ss_pred HHHHHHHhccc------hHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHh
Confidence 99988887766 8999999999999998665 1111111 111221 222211 112233333 3
Q ss_pred HHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhHHHHH
Q 005769 194 VVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKA 273 (678)
Q Consensus 194 ~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~~~~~~a 273 (678)
..+-|+|. -+.|++.|...|+..+. --=+.++..- +.|+.....+...--++ -.-.+ ++..
T Consensus 771 ~~d~g~e~----~~~~lnefl~~Isagl~---gd~~~~~as~---Ivai~~il~e~~~~ld~------~~l~~---li~~ 831 (1176)
T KOG1248|consen 771 SLDDGNEP----ASAILNEFLSIISAGLV---GDSTRVVASD---IVAITHILQEFKNILDD------ETLEK---LISM 831 (1176)
T ss_pred hhcccccc----hHHHHHHHHHHHHhhhc---ccHHHHHHHH---HHHHHHHHHHHhccccH------HHHHH---HHHH
Confidence 34666666 23344444333322222 1123444321 44444444433331110 01111 1222
Q ss_pred HHHHHHHhhc------ccCCCCccccCCCCcccccHHHHHHHHHHHccccchhhhhhHHHHH
Q 005769 274 FSALLQQAWL------THIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELL 329 (678)
Q Consensus 274 ~stlLq~aw~------~P~~~~E~~~~P~~~~~~D~s~lle~il~~~t~~~~~~~~kis~L~ 329 (678)
++-.|.+=.- +-+-.+-.+.+|..+.......|+..+++++...+-.+-+|+--|+
T Consensus 832 V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 832 VCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL 893 (1176)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2222221100 0001111456777777777778888899988888888888776666
No 145
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=23.79 E-value=45 Score=40.03 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=6.3
Q ss_pred HHHHHHHHHccccc
Q 005769 305 MLLRSIILSVSERN 318 (678)
Q Consensus 305 ~lle~il~~~t~~~ 318 (678)
.+.++|+--++++.
T Consensus 675 ~vseeivhnlD~Ce 688 (952)
T KOG1834|consen 675 RVSEEIVHNLDYCE 688 (952)
T ss_pred hhhhhhhcccCceE
Confidence 34444444444443
No 146
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=23.72 E-value=41 Score=39.54 Aligned_cols=7 Identities=29% Similarity=0.606 Sum_probs=2.7
Q ss_pred CccCccc
Q 005769 585 EGDECEE 591 (678)
Q Consensus 585 ddde~eE 591 (678)
|+++.||
T Consensus 238 d~edeEe 244 (678)
T KOG0127|consen 238 DSEDEEE 244 (678)
T ss_pred ccccccc
Confidence 3333333
No 147
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=23.50 E-value=91 Score=33.08 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHhhHHHHHHHHHhcCccc-hhhhhhhHHHHhhCCC
Q 005769 387 IIEGIGAFLSEAILQYPSA-TWRACSCVHTLLHVPK 421 (678)
Q Consensus 387 ~ie~l~~fvs~ai~~~p~a-~~rACkl~h~lL~~~~ 421 (678)
+..-+.-.+-++++.+... ..++|+|.+.++.++.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 3344444555666666555 9999999999999887
No 148
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=23.25 E-value=4.2e+02 Score=31.48 Aligned_cols=51 Identities=6% Similarity=0.128 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhhccccccccc---hHHHHHHHHHHHhcCCCCCCChhHHHHHHH
Q 005769 184 NSILFELLSSVVGAANENVADHI---PYIVSSLVAAISKHMHPSSEPWPQVVERGF 236 (678)
Q Consensus 184 ~~~L~qll~~~vE~g~E~va~~l---p~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~ 236 (678)
...|.++..-+++.-++.|...- .-++..|.++++|.+-=-++ |+.|.+-+
T Consensus 484 ~~~l~~iv~evi~~np~~V~~~k~Gk~k~~g~lvGqVMK~tkGkAn--p~~v~~iL 537 (544)
T PLN02751 484 PAEIEAMVDKVLEENPKQLEQYRGGKTKLQGFFAGQVMKASKGKAN--PGLLNKIL 537 (544)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHHHHHhCCCCC--HHHHHHHH
Confidence 34555555555554333332222 45556666777777665556 66665444
No 149
>PF06213 CobT: Cobalamin biosynthesis protein CobT; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised [, ]. Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO). Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in P. denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively []. CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) []. Nomenclature note: CobT of the aerobic pathway P. denitrificans is not a homologue of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous.
Probab=22.55 E-value=74 Score=33.90 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=4.2
Q ss_pred hhhHHHHHHh
Q 005769 486 FALWGSALAF 495 (678)
Q Consensus 486 F~~W~saLa~ 495 (678)
+..|...+..
T Consensus 167 ~~~~R~~l~~ 176 (282)
T PF06213_consen 167 VELWRPWLEE 176 (282)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 150
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=22.53 E-value=43 Score=37.79 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=6.5
Q ss_pred ccccchhhHHHHhh
Q 005769 630 LDEVDQLKVVASSI 643 (678)
Q Consensus 630 LdevD~~~~Vls~~ 643 (678)
+|--....|.++.|
T Consensus 367 ~DHKPEDevE~~RI 380 (542)
T KOG0699|consen 367 VDHKPEDEVETNRI 380 (542)
T ss_pred cCCCcccHHHHHHH
Confidence 33334444555555
No 151
>PHA03193 tegument protein VP11/12; Provisional
Probab=22.47 E-value=5.6e+02 Score=30.51 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=91.5
Q ss_pred cccccHHHHHHHHHHHccccchh--------hhhhHHHHHHHHHHHHhhhhhhhhccccchhhhHhhhhcccccccccce
Q 005769 298 SCIDDSSMLLRSIILSVSERNVI--------EELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNF 369 (678)
Q Consensus 298 ~~~~D~s~lle~il~~~t~~~~~--------~~~kis~L~~vwa~~ia~w~~Wee~ed~~~fD~i~e~V~l~~s~g~~~F 369 (678)
.|....-+.|+.|=+|+=||-|- .+..+.+|+ +..-++-.|-.|= +|.++--|= .+.+|..
T Consensus 191 ~~~aeLRda~~~IQkYmYYMRPdDP~~~StDT~~RL~eLL-aYV~tlY~WllW~-------mD~lDarV~-r~~~gPR-- 259 (594)
T PHA03193 191 KCWAEIRDALEFIQKYAYYMRPDDITAPSADTSARLELLF-GYVKTLYMWAMWL-------MDLLDLRAC-PNKFGPR-- 259 (594)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCccHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHH-HhhcCCC--
Confidence 55666667777888888777543 355666666 6667777899998 888875532 1223311
Q ss_pred eeccCCCCCCCCCCchhHHhhHHHHHHHHHhcCccchh----hhhhhHHHH----------hhCCCCCcccchhhhhhHH
Q 005769 370 IVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATW----RACSCVHTL----------LHVPKYSFETEGVKQSLTI 435 (678)
Q Consensus 370 ~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~~~p~a~~----rACkl~h~l----------L~~~~~s~~~eg~~d~~i~ 435 (678)
.| ++ .+.++....++|..+|+.+| .=|..++.| +..++...++.|.+-..|.
T Consensus 260 ----------~~---~~-~~~if~~~~~a~ssgpS~t~~~~a~Lc~~t~~lLa~Llris~LWt~~kWrs~~~g~~~~AIV 325 (594)
T PHA03193 260 ----------AP---ID-FDNIFLALAEAMGSLPSDKWADTALLCHFIEHLLAPLIHIGALWTCCAWRESKEGEMLRPIV 325 (594)
T ss_pred ----------CC---CC-hhhhhhccchhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecCCCCchHHHHH
Confidence 11 12 56666677789988988877 677777766 3456666666775555555
Q ss_pred HHHHHHHhhhhhccCCCCCchhHHHHHHhhhhc-------cChHHHHHHH
Q 005769 436 SFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYL-------CYPAVVEGIL 478 (678)
Q Consensus 436 ~f~~aA~~rl~~~~s~~~~l~KpLilvIssc~~-------ynP~lv~qiL 478 (678)
..+++..=-- . =.-+||.++.+.|. .||-+..-+-
T Consensus 326 AaVeLVsLvH-H-------H~QYLINmt~~GYv~Wl~Ggl~N~yLr~ALR 367 (594)
T PHA03193 326 AIVALVGLLH-H-------HCQYIINITFNGYARWLEGGLANPMLRRAIR 367 (594)
T ss_pred HHHHHHHHHH-H-------HHHHHHHHHHhheEEeccCCCCCHHHHHHHH
Confidence 5444432110 0 23357777777775 4776665443
No 152
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=22.44 E-value=2.2e+02 Score=32.13 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC--CChhhHHHHHHhhcCCcc--chhhHHHHHHHHHHhhcc
Q 005769 124 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP--PEWYPLLQVIVGRIGYED--EENSILFELLSSVVGAAN 199 (678)
Q Consensus 124 ~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p--p~~~pLLq~i~~~i~~~d--~e~~~L~qll~~~vE~g~ 199 (678)
+.-++|+++...+ +. .|||--|...|+.++++++.- ...+..++.++...-..= --..--|++|.++++..+
T Consensus 257 ~lp~lL~c~~~v~-e~---~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p 332 (373)
T PF14911_consen 257 VLPSLLECLMLVN-EE---PQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDP 332 (373)
T ss_pred hhHHHHHHHhhcC-CC---cchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCH
Confidence 3445666666554 33 899999999999999999933 444555555544431111 223466889999988888
Q ss_pred ccccccchHHHHHH
Q 005769 200 ENVADHIPYIVSSL 213 (678)
Q Consensus 200 E~va~~lp~iV~~~ 213 (678)
+-|+.-||+|...+
T Consensus 333 ~lV~~Lip~i~q~l 346 (373)
T PF14911_consen 333 QLVISLIPTIRQSL 346 (373)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777778777555
No 153
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=22.09 E-value=1e+02 Score=28.56 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhhhh
Q 005769 539 CYASLMEAAVQLKEVQ 554 (678)
Q Consensus 539 c~~slle~~~~lke~~ 554 (678)
-|.+||..+.+.++.+
T Consensus 27 ~~q~LlsGvaqm~e~v 42 (96)
T PF15387_consen 27 PFQGLLSGVAQMRELV 42 (96)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3555555555554443
No 154
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.80 E-value=48 Score=40.53 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=5.9
Q ss_pred cCccccchh
Q 005769 628 GSLDEVDQL 636 (678)
Q Consensus 628 ~~LdevD~~ 636 (678)
|..+++|..
T Consensus 939 ~g~d~~d~~ 947 (988)
T KOG2038|consen 939 GGKDDADIS 947 (988)
T ss_pred cCccccccc
Confidence 566777665
No 155
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=21.79 E-value=7.4e+02 Score=32.50 Aligned_cols=340 Identities=17% Similarity=0.119 Sum_probs=166.9
Q ss_pred chhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhc-cCCCCccHHHHHHHHHHHhccc
Q 005769 58 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CLPEDISADVYSSLLKALQMLD 136 (678)
Q Consensus 58 y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~-~l~e~~~~~~~~sll~al~dp~ 136 (678)
.+|+++.+.-+..-++..+ ++..+-+|-=++.+|+. ..+|.....+.==++..+.|+.
T Consensus 417 ~~ga~l~vs~lts~IR~lk---------------------~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~ 475 (1431)
T KOG1240|consen 417 EEGAVLFVSVLTSCIRALK---------------------TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSE 475 (1431)
T ss_pred ccceeeeHHHHHHHHHhhh---------------------cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCch
Confidence 4466666666665555432 23344445555555555 3444444455556677778888
Q ss_pred CCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCccchhhHHHHHHHHHHhh-ccccccccchHHHHHHHH
Q 005769 137 KGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGA-ANENVADHIPYIVSSLVA 215 (678)
Q Consensus 137 ~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d~e~~~L~qll~~~vE~-g~E~va~~lp~iV~~~~~ 215 (678)
--||+.|.-+|+.+|-.=...|..-..+ =|.-||.-|+.+.+- .++.|-...-.=++.||.
T Consensus 476 ------a~Vra~Al~Tlt~~L~~Vr~~~~~dani------------F~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 476 ------ADVRATALETLTELLALVRDIPPSDANI------------FPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred ------HHHHHHHHHHHHHHHhhccCCCcccchh------------hHhhhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 6699999999988887655432221111 033444444433332 222233333222334555
Q ss_pred HHHhcCCCCCCChhHHHHHHHHH-HHHHHHHhhhhhhhhhhccc--cchhhhhhh--hHHHHHHHH------------HH
Q 005769 216 AISKHMHPSSEPWPQVVERGFAA-LALMAQSWENFLREEVELDQ--SSGKWESGQ--AAIAKAFSA------------LL 278 (678)
Q Consensus 216 ~~~k~l~p~~~~~~Q~ve~g~~a-laa~~q~~~~~~~de~~d~~--~~~~~a~G~--~~~~~a~st------------lL 278 (678)
++.+++ +.+++- .++|-. +.+.+.. ....+..+. -+|.+.+++ ||
T Consensus 538 tA~rFl-----------e~~q~~~~~g~~n-------~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Ll 599 (1431)
T KOG1240|consen 538 TAYRFL-----------ELTQELRQAGMLN-------DPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALL 599 (1431)
T ss_pred HHHHHH-----------HHHHHHHhccccc-------CcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 553333 211111 111111 1111111 111111111 122333333 34
Q ss_pred HHhhcccC------CCCccccCCC-CcccccHHHHHH-HHHHHccccchhhhhh-HHHHHHHHHHHHhhhhhhhhccccc
Q 005769 279 QQAWLTHI------QPLECEVSAP-PSCIDDSSMLLR-SIILSVSERNVIEELK-LSELLLVWADLIGDWHAWEETEDLS 349 (678)
Q Consensus 279 q~aw~~P~------~~~E~~~~P~-~~~~~D~s~lle-~il~~~t~~~~~~~~k-is~L~~vwa~~ia~w~~Wee~ed~~ 349 (678)
|+ +.|+ .+--..+++. +++.||=.--|+ ....++++.+.++... +++.+ =|+|.....+=||.==.+
T Consensus 600 e~--i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyl--lPLl~Q~ltD~EE~Viv~ 675 (1431)
T KOG1240|consen 600 ES--IIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYL--LPLLQQGLTDGEEAVIVS 675 (1431)
T ss_pred HH--HHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHH--HHHHHHhccCcchhhHHH
Confidence 44 4442 2333667777 488888776666 5566777666666655 66654 478888887766544455
Q ss_pred hhhhHhhhhcccc--cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHhcCccchhhhhhhHHHH----hhCCCCC
Q 005769 350 VFDCIKEIVNLHS--KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTL----LHVPKYS 423 (678)
Q Consensus 350 ~fD~i~e~V~l~~--s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~~~p~a~~rACkl~h~l----L~~~~~s 423 (678)
|+.++.-+.-++. +.-...++..-.|- =..|+ .=|-..+..||-.+..+ =++.-+=|+++-.+ ....-+-
T Consensus 676 aL~~ls~Lik~~ll~K~~v~~i~~~v~Pl-L~hPN--~WIR~~~~~iI~~~~~~-ls~advyc~l~P~irpfl~~~v~~i 751 (1431)
T KOG1240|consen 676 ALGSLSILIKLGLLRKPAVKDILQDVLPL-LCHPN--LWIRRAVLGIIAAIARQ-LSAADVYCKLMPLIRPFLERPVIQI 751 (1431)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhhhhh-eeCch--HHHHHHHHHHHHHHHhh-hhhhhheEEeehhhHHhhhccHhhh
Confidence 6666666644443 22222222211110 01332 22233444455444432 23334445554332 2222222
Q ss_pred cccchhhhhhHHHHHHHHHhhhhhccCCCCCchhHHHHH
Q 005769 424 FETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLA 462 (678)
Q Consensus 424 ~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~~l~KpLilv 462 (678)
.-.|+-.+.+.+|+.+-.|+++.+-+.....+||.+...
T Consensus 752 ~s~~~LlsclkpPVsRsv~~~l~r~~~ens~f~k~l~~~ 790 (1431)
T KOG1240|consen 752 ESKEVLLSCLKPPVSRSVFNQLLRWSDENSSFWKKLLER 790 (1431)
T ss_pred cchHHHHHHhcCCCcHHHHHHHHHHhhcchHHHHHHHHH
Confidence 224567777778888888888876444455588886654
No 156
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=21.69 E-value=1.3e+02 Score=20.90 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=20.2
Q ss_pred hhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhc
Q 005769 99 PYLVASANWILGELASCLPEDISADVYSSLLKALQM 134 (678)
Q Consensus 99 p~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~d 134 (678)
+++|..|.|.+|++.+ ......|+++|.|
T Consensus 1 ~~vR~~aa~aLg~~~~-------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGD-------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCC-------HhHHHHHHHHhcC
Confidence 3689999999999853 2344556666654
No 157
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=21.39 E-value=3.6e+02 Score=31.02 Aligned_cols=142 Identities=23% Similarity=0.240 Sum_probs=73.7
Q ss_pred CCCChhhHHHHHHhhcCCc-------------cchhhHHHHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCCh
Q 005769 162 MPPEWYPLLQVIVGRIGYE-------------DEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPW 228 (678)
Q Consensus 162 ~pp~~~pLLq~i~~~i~~~-------------d~e~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~ 228 (678)
.|.+...|++.+..-|..- +.+++.+..|+..+.-.++..-+...+ .+.+++ +.. .|..+
T Consensus 4 ~~~ev~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~----~~~~el-~~~--~~~~L 76 (420)
T PF08101_consen 4 TPEEVKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGE----ALIQEL-RFT--SPHTL 76 (420)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHH----HHHHHH-hcC--CchHH
Confidence 3455556666666555222 344556667777666555443222212 222222 111 12333
Q ss_pred hHHHHHHHHHHH---HHHHHhhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCC---Cccccc
Q 005769 229 PQVVERGFAALA---LMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAP---PSCIDD 302 (678)
Q Consensus 229 ~Q~ve~g~~ala---a~~q~~~~~~~de~~d~~~~~~~a~G~~~~~~a~stlLq~aw~~P~~~~E~~~~P~---~~~~~D 302 (678)
++++.=+...|- .=|++++....-|.+.+-- .++|.++| +..+|. .+|+-|
T Consensus 77 ~~~LKw~w~RLp~gvVgW~~Y~~Fk~~E~~~~yp-----------~~AF~~~l------------p~~l~s~a~~~Iv~d 133 (420)
T PF08101_consen 77 ISVLKWIWSRLPGGVVGWDSYEEFKRREREAGYP-----------RDAFLTFL------------PQCLPSPAHASIVYD 133 (420)
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHhhcCCC-----------hHHHHHhc------------cccCCChhHHHHHHH
Confidence 444332222221 1267776666644433333 27787776 344443 256666
Q ss_pred HHHHHHHHHHHccccchhhhhhHHHHHHHHHH
Q 005769 303 SSMLLRSIILSVSERNVIEELKLSELLLVWAD 334 (678)
Q Consensus 303 ~s~lle~il~~~t~~~~~~~~kis~L~~vwa~ 334 (678)
--+||-.|..+-....-. ..||+.|-.+|+-
T Consensus 134 FfdLL~sIaa~s~~Ngls-grKlsrm~g~WaF 164 (420)
T PF08101_consen 134 FFDLLSSIAAHSKKNGLS-GRKLSRMAGIWAF 164 (420)
T ss_pred HHHHHHHHHhcCcccCCC-HHHHHHHHHHHHC
Confidence 666766777764444444 7789999998873
No 158
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=21.38 E-value=35 Score=39.70 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHhhh
Q 005769 431 QSLTISFSCAAFSRF 445 (678)
Q Consensus 431 d~~i~~f~~aA~~rl 445 (678)
-++|..|.-..+++-
T Consensus 164 tsVVRGFSPs~isss 178 (507)
T PF11702_consen 164 TSVVRGFSPSQISSS 178 (507)
T ss_pred CceeecccccccCCc
Confidence 456777766665555
No 159
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=21.34 E-value=97 Score=33.91 Aligned_cols=130 Identities=13% Similarity=0.205 Sum_probs=62.0
Q ss_pred chhhhHhhhhcccccccccceeeccCCCCCCCC--CCchhHHhhHHHHHHHHHhcCccchhhhhhhHHHHhh-CCC----
Q 005769 349 SVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPP--VPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLH-VPK---- 421 (678)
Q Consensus 349 ~~fD~i~e~V~l~~s~g~~~F~~~~~~~~~~~p--~~~~s~ie~l~~fvs~ai~~~p~a~~rACkl~h~lL~-~~~---- 421 (678)
+++.||+..+. +|.-+-.+|+...+|++.... .+...+++++.+ +..-+..-|..+|.||-+.--+++ ++.
T Consensus 57 AA~~c~kay~~-~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~-~~~~~~~dpy~~wfAa~il~hll~dn~~~Ke~ 134 (312)
T PF04869_consen 57 AALYCFKAYFY-NNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLD-YDSDLSLDPYRCWFAAVILMHLLRDNPEAKEQ 134 (312)
T ss_dssp HHHHHHHHHHT-T-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT-------SS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHH-hhccccCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 46778888763 233355568888888777666 333346666665 555444555568999865433333 221
Q ss_pred ---C---CcccchhhhhhHHHHHHHHHhhhhhccCCCCCchhH-HHHHHhhhhccChHHHHHHHhhcCC
Q 005769 422 ---Y---SFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKP-VVLAISSCYLCYPAVVEGILKKDED 483 (678)
Q Consensus 422 ---~---s~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~~l~Kp-LilvIssc~~ynP~lv~qiLek~~~ 483 (678)
. ..+...-+-+++..+.+....-+.+ ...+-.+. ++...+.=++-+|..|...|.....
T Consensus 135 al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~---~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~ 200 (312)
T PF04869_consen 135 ALRVTEGDESSGEEPVTLIQTVSELLIASLRR---NSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSN 200 (312)
T ss_dssp HTT--EE--STTS--EEHHHHHHHHTTT-------T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTH
T ss_pred HHcccCCCCCCCCCcccHHHHHHHHHHhhhhc---CCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcch
Confidence 1 0011123344555555544443332 22234444 4444444567789999999986543
No 160
>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length. The function of this family is unknown.
Probab=21.08 E-value=79 Score=34.16 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=25.0
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhccCCC
Q 005769 504 RLSLESEIKLAVLTLAKVVERLLGLGNP 531 (678)
Q Consensus 504 ~l~~ese~Kl~vl~L~~vie~Llsl~~~ 531 (678)
++++++|+|+.++++.++++.+++++.+
T Consensus 204 ~lT~~aE~~~fv~s~l~~v~~~~~~~~~ 231 (308)
T PF07387_consen 204 SLTQEAEVKVFVKSCLKLVEKQRSAETE 231 (308)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcHh
Confidence 5888999999999999999999886655
No 161
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.37 E-value=2.2e+02 Score=34.92 Aligned_cols=74 Identities=26% Similarity=0.256 Sum_probs=52.4
Q ss_pred cchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhH-HHHHHHhcCCCCCChhhHHHHHHh
Q 005769 97 CLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAG-AIVGLLENDYMPPEWYPLLQVIVG 175 (678)
Q Consensus 97 ~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~-Ai~sLie~~~~pp~~~pLLq~i~~ 175 (678)
.-|=-|+.=+|++|||+.+.+ +...+++.+++...+.. .-|+.+=-. +|+=|+. .|++=..++|.+..
T Consensus 436 ~epeak~amiWilg~y~~~i~--~a~elL~~f~en~~dE~------~~Vql~LLta~ik~Fl~---~p~~tq~~l~~vL~ 504 (734)
T KOG1061|consen 436 QEPEAKAALIWILGEYAERIE--NALELLESFLENFKDET------AEVQLELLTAAIKLFLK---KPTETQELLQGVLP 504 (734)
T ss_pred CChHHHHHHHHHHhhhhhccC--cHHHHHHHHHhhcccch------HHHHHHHHHHHHHHHhc---CCccHHHHHHHHHh
Confidence 345678889999999999999 88899999999998887 556554322 2333443 34466777777777
Q ss_pred hcCCcc
Q 005769 176 RIGYED 181 (678)
Q Consensus 176 ~i~~~d 181 (678)
..-.+.
T Consensus 505 ~~~~d~ 510 (734)
T KOG1061|consen 505 LATADT 510 (734)
T ss_pred hhhccc
Confidence 664433
No 162
>PF02106 Fanconi_C: Fanconi anaemia group C protein; InterPro: IPR000686 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy. Four complementation groups have been identified, designated A to D. The gene for group C (FACC) has been cloned. Expression of the FACC cDNA corrects the phenotypic defect of FA(C) cells, resulting in normalized cell growth in the presence of DNA cross-linking agents such as mitomycin C (MMC). Gene transfer of the FACC gene should provide a survival advantage to transduced hematopoietic cells, suggesting that FA might be an ideal candidate for gene therapy []. The function of the FACC gene is not known. Immunofluorescence and sub-cellular fractionation studies of human cell lines, and COS-7 cells transiently expressing human FACC, showed the protein to be located primarily in the cytoplasm. Yet, placement of a nuclear localisation signal at the N terminus of FACC directed the hybrid protein to the nuclei of transfected COS-7 cells. Such findings suggest an indirect role for FACC in regulating DNA repair in this group of Fanconi anaemia [].; GO: 0006281 DNA repair
Probab=20.11 E-value=1.5e+03 Score=27.05 Aligned_cols=51 Identities=29% Similarity=0.441 Sum_probs=34.6
Q ss_pred CcCcchhhhhHHHH-HHHhcCCCCCChhhHHHHHHhhcCCccchhhHH-HHHHHHHHhh
Q 005769 141 SCYPVRASAAGAIV-GLLENDYMPPEWYPLLQVIVGRIGYEDEENSIL-FELLSSVVGA 197 (678)
Q Consensus 141 s~lPVRvsAa~Ai~-sLie~~~~pp~~~pLLq~i~~~i~~~d~e~~~L-~qll~~~vE~ 197 (678)
++-|.||.|-+=+| .|| -.|+..||+-++...=|.+-.| +| .+||.-++|+
T Consensus 175 r~~~~~i~~lS~~CiPLv----Tlpd~~PLveaLL~~hg~~~~e--~L~~eFleaVneA 227 (559)
T PF02106_consen 175 RMSPERIHALSRVCIPLV----TLPDFEPLVEALLTYHGHEPQE--VLSPEFLEAVNEA 227 (559)
T ss_pred cCChHHHHHHHHHHHHHh----cCcccchHHHHHHHhCCCChHH--HhcHHHHHHHHHH
Confidence 45677776654443 121 2389999998888876666655 55 7888888887
Done!