Query 005769
Match_columns 678
No_of_seqs 70 out of 72
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 06:58:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 99.9 2.3E-23 8E-28 240.9 29.1 404 54-550 418-866 (960)
2 2x1g_F Cadmus; transport prote 98.8 1.4E-08 4.9E-13 117.1 11.4 102 56-170 479-582 (971)
3 4fdd_A Transportin-1; heat rep 98.7 4.8E-07 1.6E-11 103.0 21.6 395 56-522 374-783 (852)
4 2x19_B Importin-13; nuclear tr 98.5 3.2E-06 1.1E-10 97.1 18.5 186 54-251 462-656 (963)
5 3m1i_C Exportin-1; heat repeat 98.0 8.9E-05 3E-09 87.2 17.4 136 56-197 468-619 (1049)
6 2bpt_A Importin beta-1 subunit 98.0 0.0004 1.4E-08 77.6 21.2 143 57-209 385-542 (861)
7 1qgr_A Protein (importin beta 97.9 0.00031 1.1E-08 78.6 17.9 133 58-200 383-541 (876)
8 1qgr_A Protein (importin beta 97.6 0.0074 2.5E-07 67.5 23.6 324 56-447 343-702 (876)
9 4fdd_A Transportin-1; heat rep 97.0 0.26 8.9E-06 56.1 27.4 171 58-247 338-515 (852)
10 2bpt_A Importin beta-1 subunit 96.9 0.22 7.4E-06 55.6 25.7 169 58-246 348-531 (861)
11 4hat_C Exportin-1; heat repeat 96.8 0.018 6.1E-07 68.8 16.9 61 97-161 512-572 (1023)
12 2qk2_A LP04448P; mini spindles 96.6 0.0044 1.5E-07 60.1 8.0 178 50-248 24-209 (242)
13 2x19_B Importin-13; nuclear tr 95.8 2.8 9.6E-05 48.2 27.0 141 96-246 460-601 (963)
14 3ibv_A Exportin-T; karyopherin 95.8 0.027 9.3E-07 66.8 10.4 81 96-178 506-588 (980)
15 2vgl_B AP-2 complex subunit be 95.5 3.3 0.00011 45.7 25.0 61 95-161 131-192 (591)
16 1w63_A Adapter-related protein 95.2 0.026 8.7E-07 63.1 7.3 138 80-232 104-253 (618)
17 2qk1_A Protein STU2; STU2P, XM 94.9 0.15 5.1E-06 50.8 10.9 200 36-248 12-224 (249)
18 3gjx_A Exportin-1; transport, 94.8 0.44 1.5E-05 57.4 16.7 60 99-162 540-599 (1073)
19 2vgl_B AP-2 complex subunit be 94.7 0.29 9.8E-06 54.1 13.7 145 65-231 70-220 (591)
20 1u6g_C TIP120 protein, CAND1; 94.4 0.15 5.1E-06 60.5 11.2 152 59-222 152-306 (1230)
21 2qk2_A LP04448P; mini spindles 94.1 0.17 5.9E-06 48.8 9.1 112 58-181 74-189 (242)
22 2ca6_A RAN GTPase-activating p 94.1 0.02 6.9E-07 58.9 2.6 13 539-551 321-333 (386)
23 1ibr_B P95, importin beta-1 su 94.0 0.067 2.3E-06 54.8 6.3 110 56-177 343-460 (462)
24 1u6g_C TIP120 protein, CAND1; 93.7 0.22 7.4E-06 59.2 10.8 137 96-245 59-205 (1230)
25 3tj1_A RNA polymerase I-specif 93.6 0.5 1.7E-05 54.2 12.9 128 407-550 131-262 (649)
26 2jdq_A Importin alpha-1 subuni 93.5 0.063 2.2E-06 55.1 5.0 94 96-198 287-392 (450)
27 1b3u_A Protein (protein phosph 93.4 0.23 7.7E-06 52.6 9.1 80 96-181 137-216 (588)
28 2qk1_A Protein STU2; STU2P, XM 93.2 0.23 7.9E-06 49.4 8.4 140 59-209 79-234 (249)
29 1xqr_A HSPBP1 protein; armadil 93.1 0.075 2.6E-06 54.7 4.9 91 62-161 58-157 (296)
30 1b3u_A Protein (protein phosph 93.0 0.14 4.9E-06 54.2 7.0 59 96-160 413-472 (588)
31 1wa5_B Importin alpha subunit; 92.6 0.12 4.1E-06 55.4 5.8 96 96-199 352-460 (530)
32 4db6_A Armadillo repeat protei 91.6 0.082 2.8E-06 49.0 2.7 59 96-160 65-127 (210)
33 1te4_A Conserved protein MTH18 90.2 0.32 1.1E-05 42.7 5.0 48 96-156 53-100 (131)
34 3ltm_A Alpha-REP4; protein eng 88.8 1 3.4E-05 41.9 7.5 81 96-199 61-141 (211)
35 1ibr_B P95, importin beta-1 su 87.6 4.5 0.00015 41.2 12.2 114 97-217 49-181 (462)
36 4db8_A Armadillo-repeat protei 87.5 0.14 4.9E-06 48.6 0.9 59 96-160 107-169 (252)
37 3ltj_A Alpharep-4; protein eng 86.7 1.1 3.7E-05 41.4 6.3 48 96-156 87-134 (201)
38 1oyz_A Hypothetical protein YI 86.6 4 0.00014 39.5 10.6 84 96-197 34-118 (280)
39 2vgl_A Adaptor protein complex 86.6 0.43 1.5E-05 53.6 4.2 136 81-232 109-260 (621)
40 1oyz_A Hypothetical protein YI 86.5 5.9 0.0002 38.3 11.8 100 96-210 65-165 (280)
41 3ltm_A Alpha-REP4; protein eng 86.2 3.4 0.00012 38.3 9.5 48 96-156 30-77 (211)
42 3ltj_A Alpharep-4; protein eng 85.6 4.6 0.00016 37.1 10.0 48 96-156 25-72 (201)
43 4hxt_A De novo protein OR329; 85.2 0.71 2.4E-05 43.1 4.3 58 96-159 55-116 (252)
44 4db8_A Armadillo-repeat protei 85.0 1.4 4.9E-05 41.6 6.4 110 63-181 31-151 (252)
45 2jdq_A Importin alpha-1 subuni 83.9 1 3.5E-05 46.1 5.1 81 96-181 118-205 (450)
46 4hxt_A De novo protein OR329; 83.8 0.88 3E-05 42.5 4.3 59 96-160 97-159 (252)
47 2x1g_F Cadmus; transport prote 82.6 6.2 0.00021 45.6 11.5 145 96-245 51-219 (971)
48 1wa5_B Importin alpha subunit; 82.4 0.75 2.6E-05 49.3 3.6 80 96-181 184-270 (530)
49 4db6_A Armadillo repeat protei 82.1 0.33 1.1E-05 44.8 0.6 59 96-160 107-169 (210)
50 4b8j_A Importin subunit alpha- 81.5 1.2 4.2E-05 47.4 4.8 59 96-159 297-359 (528)
51 3ul1_B Importin subunit alpha- 81.1 1.2 4E-05 48.2 4.6 76 79-160 308-389 (510)
52 4b8j_A Importin subunit alpha- 81.0 1.4 4.6E-05 47.1 4.9 92 96-194 171-268 (528)
53 1te4_A Conserved protein MTH18 80.4 0.96 3.3E-05 39.7 3.0 47 96-155 84-130 (131)
54 4gmo_A Putative uncharacterize 78.9 0.49 1.7E-05 53.6 0.7 58 95-160 44-107 (684)
55 3tpo_A Importin subunit alpha- 77.8 6.3 0.00022 42.6 9.0 93 62-160 94-193 (529)
56 1xqr_A HSPBP1 protein; armadil 77.2 4.5 0.00015 41.4 7.2 58 96-159 178-239 (296)
57 3tpo_A Importin subunit alpha- 76.0 0.98 3.3E-05 48.9 2.0 59 96-160 346-408 (529)
58 4hat_C Exportin-1; heat repeat 74.3 2.1 7.2E-05 51.2 4.4 71 107-195 435-505 (1023)
59 3m1i_C Exportin-1; heat repeat 71.8 65 0.0022 37.9 16.1 103 60-172 519-632 (1049)
60 3ul1_B Importin subunit alpha- 68.1 22 0.00076 38.2 10.3 94 61-160 74-174 (510)
61 4fp9_B Mterf domain-containing 65.5 1.3 4.4E-05 46.9 0.0 28 307-335 46-73 (335)
62 2ayu_A Nucleosome assembly pro 64.0 1.5 5.1E-05 47.9 0.1 17 344-360 204-221 (417)
63 2ayu_A Nucleosome assembly pro 62.6 1.7 5.9E-05 47.4 0.3 10 485-494 311-320 (417)
64 4ady_A RPN2, 26S proteasome re 60.9 36 0.0012 40.9 11.0 84 86-179 614-699 (963)
65 1w63_A Adapter-related protein 59.8 30 0.001 38.5 9.6 71 87-170 354-424 (618)
66 3ibv_A Exportin-T; karyopherin 53.2 3.5E+02 0.012 32.1 20.3 246 123-445 490-751 (980)
67 3tjz_B Coatomer subunit gamma; 52.9 41 0.0014 35.6 8.9 118 95-232 114-231 (355)
68 2iw3_A Elongation factor 3A; a 52.7 25 0.00084 42.3 7.8 115 124-248 92-208 (986)
69 4fp9_B Mterf domain-containing 50.6 3.3 0.00011 43.7 0.0 16 535-550 255-270 (335)
70 2vgl_A Adaptor protein complex 49.0 8.3 0.00028 43.2 2.9 59 96-160 159-218 (621)
71 1wa5_C Importin alpha RE-expor 48.0 72 0.0025 37.0 10.6 75 115-196 77-152 (960)
72 1jdh_A Beta-catenin; beta-cate 45.4 23 0.0008 36.9 5.5 58 96-159 238-296 (529)
73 2zd7_A VPS75, vacuolar protein 41.5 6.5 0.00022 40.2 0.5 17 344-360 73-90 (264)
74 3ay5_A Cyclin-D1-binding prote 37.0 21 0.00073 37.9 3.6 19 538-556 179-197 (360)
75 2z6g_A B-catenin; FULL-length, 34.6 40 0.0014 38.6 5.6 58 96-159 371-429 (780)
76 2z6h_A Catenin beta-1, beta-ca 32.8 42 0.0014 36.9 5.3 92 96-194 25-122 (644)
77 2z6h_A Catenin beta-1, beta-ca 32.3 53 0.0018 36.1 6.0 65 87-159 228-293 (644)
78 2iw3_A Elongation factor 3A; a 31.2 76 0.0026 38.2 7.4 142 59-214 70-223 (986)
79 3tjz_B Coatomer subunit gamma; 28.6 96 0.0033 32.8 6.9 93 61-160 102-207 (355)
80 2zd7_A VPS75, vacuolar protein 28.4 22 0.00076 36.3 1.9 12 309-320 78-89 (264)
81 1jdh_A Beta-catenin; beta-cate 26.3 26 0.00088 36.6 2.0 81 96-181 28-114 (529)
82 1xm9_A Plakophilin 1; armadill 25.3 29 0.00098 36.9 2.2 58 96-159 295-361 (457)
83 3now_A UNC-45 protein, SD10334 23.2 48 0.0016 39.0 3.6 172 61-245 601-783 (810)
84 2byk_A Chrac-16; nucleosome sl 22.4 18 0.00063 33.8 0.0 12 434-445 42-53 (140)
85 3gjx_A Exportin-1; transport, 22.3 2.4E+02 0.0084 34.1 9.5 101 96-197 72-179 (1073)
86 3ip4_B Aspartyl/glutamyl-tRNA( 21.7 3.4E+02 0.012 30.1 9.8 117 102-237 338-469 (483)
87 2z6g_A B-catenin; FULL-length, 20.9 1.4E+02 0.0048 34.1 6.9 93 96-195 161-259 (780)
88 3nmz_A APC variant protein; pr 20.9 81 0.0028 34.3 4.7 62 96-160 390-452 (458)
89 3sbt_B A1 cistron-splicing fac 20.6 73 0.0025 34.2 4.1 73 462-542 208-295 (363)
90 3b2a_A TON_1937, putative unch 20.4 7.2E+02 0.025 25.6 14.0 125 64-197 53-180 (265)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.92 E-value=2.3e-23 Score=240.95 Aligned_cols=404 Identities=13% Similarity=0.086 Sum_probs=266.8
Q ss_pred hhccchhhHhhHhhHHHHHHhhC---hH-----HHHHHHHhhcccCccccCc---chhHHHhhHHHHhhhhccCCCCccH
Q 005769 54 IQKDYFGVLMAYGGLQEFLREQK---SE-----FTANLVRSRVLPLYSVSVC---LPYLVASANWILGELASCLPEDISA 122 (678)
Q Consensus 54 ~~~~y~GaL~a~G~L~~~Lk~~~---k~-----~~~~l~~~rV~P~~~~~~~---sp~LrA~A~Wv~gela~~l~e~~~~ 122 (678)
+.+.+.|||+|+|++++.+...+ +. .+..++.++|+|.+. .+ .|+||++|||++|+|+..++++...
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~--~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~ 495 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT--SNNIPHIILRVDAIKYIYTFRNQLTKAQLI 495 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH--CSSCSCHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhc--CCCCCCceehHHHHHHHHHHHhhCCHHHHH
Confidence 35667899999999987643211 11 677888899999887 34 8999999999999999977767788
Q ss_pred HHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC-------------CCCChhhHHHHHHhhcCCc--------c
Q 005769 123 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-------------MPPEWYPLLQVIVGRIGYE--------D 181 (678)
Q Consensus 123 ~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~-------------~pp~~~pLLq~i~~~i~~~--------d 181 (678)
.++..++++|.+++ +|||+.|+.||..|+++.+ ..|-+.+||+.++..+... +
T Consensus 496 ~~l~~l~~~L~d~~------~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 496 ELMPILATFLQTDE------YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp HHHHHHHHHTTCSC------HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred HHHHHHHHHhCCCC------hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence 88888888888765 9999999999999998632 3377888888888888765 4
Q ss_pred chhhHHHHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccch
Q 005769 182 EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSG 261 (678)
Q Consensus 182 ~e~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~ 261 (678)
+| .+...+..++++..|++..+++.++..+...+.+.+....+ ++.....|++++++.++ ..++ .
T Consensus 570 ~e--~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~--~~~~~~~~e~l~~l~~~---~~~~-------~- 634 (960)
T 1wa5_C 570 NE--FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN--PRFTHYTFESIGAILNY---TQRQ-------N- 634 (960)
T ss_dssp CH--HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHT---SCGG-------G-
T ss_pred cH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHHHhc---CCcc-------h-
Confidence 44 77888888888877877777766766665544332221112 33334456666666654 1110 0
Q ss_pred hhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHH--hhh
Q 005769 262 KWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI--GDW 339 (678)
Q Consensus 262 ~~a~G~~~~~~a~stlLq~aw~~P~~~~E~~~~P~~~~~~D~s~lle~il~~~t~~~~~~~~kis~L~~vwa~~i--a~w 339 (678)
.... +-.+...|..+|+.- . ..+..++..++..++... ..++. .||.+|+.++ ..|
T Consensus 635 ~~~~-~~~~~p~~~~iL~~~-----------~---~~~~~~~~~i~~~l~~~~----~~~~~---~~~~~~~~l~~~~~~ 692 (960)
T 1wa5_C 635 LPLL-VDSMMPTFLTVFSED-----------I---QEFIPYVFQIIAFVVEQS----ATIPE---SIKPLAQPLLAPNVW 692 (960)
T ss_dssp HHHH-HHHHHHHHHHHHHTT-----------C---TTTHHHHHHHHHHHHHHC----SSCCT---TTGGGHHHHTSGGGG
T ss_pred HHHH-HHHHHHHHHHHHHhh-----------h---HhhHHHHHHHHHHHHHhc----cCCCH---HHHHHHHHHcCHHHh
Confidence 0011 111223333333210 0 012233444444444444 22233 5788888888 777
Q ss_pred hhhhhccccchhhhHhhhhcccc---cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHh-cCccchhhhhhhHHH
Q 005769 340 HAWEETEDLSVFDCIKEIVNLHS---KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAIL-QYPSATWRACSCVHT 415 (678)
Q Consensus 340 ~~Wee~ed~~~fD~i~e~V~l~~---s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~-~~p~a~~rACkl~h~ 415 (678)
.... ++..++++.. ++|.++|.. ++.+..++.+.+. .. ....||++...
T Consensus 693 ~~~~---------~~~~~~~~L~~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~~--~~~~a~~ll~~ 745 (960)
T 1wa5_C 693 ELKG---------NIPAVTRLLKSFIKTDSSIFPD----------------LVPVLGIFQRLIASKA--YEVHGFDLLEH 745 (960)
T ss_dssp CCTT---------THHHHHHHHHHHHHHHGGGCSC----------------SHHHHHHHHHHHTCTT--THHHHHHHHHH
T ss_pred cCCC---------CchhHHHHHHHHHHhChHHHHH----------------HHHHHHHHHHHhCCCc--ccchHHHHHHH
Confidence 6531 5566655443 234444431 3556666777775 22 23789999999
Q ss_pred HhhCCCCCcccchh-hhhhHHHHHHHHHhhhhhccCCCCCchhH-HHHHHhhhhccChHHHHHHHhhcCCCch-h----h
Q 005769 416 LLHVPKYSFETEGV-KQSLTISFSCAAFSRFRAIQSKPSSLWKP-VVLAISSCYLCYPAVVEGILKKDEDGGF-A----L 488 (678)
Q Consensus 416 lL~~~~~s~~~eg~-~d~~i~~f~~aA~~rl~~~~s~~~~l~Kp-LilvIssc~~ynP~lv~qiLek~~~~~F-~----~ 488 (678)
++.++. |. .+.++++++.+++.|+.. ++..++.|. ++.+...|++|+|+.+.++|++-+.+.| . .
T Consensus 746 i~~~~~------~~~~~~yl~~i~~~l~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~ 817 (960)
T 1wa5_C 746 IMLLID------MNRLRPYIKQIAVLLLQRLQN--SKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNF 817 (960)
T ss_dssp HHHHSC------HHHHGGGHHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHT
T ss_pred HHHHCC------HHHHHHHHHHHHHHHHHHHhh--CCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHH
Confidence 999888 77 999999999999999976 233446645 7888889999999999999998876633 3 6
Q ss_pred HHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHh
Q 005769 489 WGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQL 550 (678)
Q Consensus 489 W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~~~~~~l~~c~~slle~~~~l 550 (678)
|...+.. +.+.+|||++++||++++ ..+.-.+..+...+..+++.++.+
T Consensus 818 w~~~~~~---------~~~~~erk~~~~gl~~ll----~~~~~~~~~~~~~~~~~~~~i~~l 866 (960)
T 1wa5_C 818 IITTLPT---------IGNLLDRKIALIGVLNMV----INGQFFQSKYPTLISSTMNSIIET 866 (960)
T ss_dssp HHHHGGG---------CCSHHHHHHHHHHHHHHH----HSCHHHHHHCGGGHHHHHHHHHHH
T ss_pred hccchhh---------ccCHHHHHHHHHHHHHHH----hcccccchhHHHHHHHHHHHHHHH
Confidence 7776654 445899999999999777 544111123334455555555554
No 2
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.79 E-value=1.4e-08 Score=117.14 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=72.1
Q ss_pred ccchhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCC--CCccHHHHHHHHHHHh
Q 005769 56 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP--EDISADVYSSLLKALQ 133 (678)
Q Consensus 56 ~~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~--e~~~~~~~~sll~al~ 133 (678)
+...++|+++|++.+.+.+.....+..++. ++|.+....+.|++|++|||++|+|+.++. .+....++..++++|
T Consensus 479 ~~~eaal~~l~~iae~~~~~~~~~l~~l~~--~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l- 555 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEEKRQIPRLMR--VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL- 555 (971)
T ss_dssp HHHHHHHHHHHHTTTC------CHHHHHHH--HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHH--HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-
Confidence 345599999999998777655557777766 777665223489999999999999999554 345666777777777
Q ss_pred cccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHH
Q 005769 134 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLL 170 (678)
Q Consensus 134 dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLL 170 (678)
+ .+||..|+.||..|.+++. ..+.|.+
T Consensus 556 ~--------~~v~~~A~~al~~l~~~~~--~~l~p~~ 582 (971)
T 2x1g_F 556 N--------SSMSAQATLGLKELCRDCQ--LQLKPYA 582 (971)
T ss_dssp H--------SSCHHHHHHHHHHHHHHCH--HHHHHHH
T ss_pred C--------hHHHHHHHHHHHHHHHHHH--HhccccH
Confidence 3 5799999999999998864 3344555
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.74 E-value=4.8e-07 Score=103.00 Aligned_cols=395 Identities=11% Similarity=0.089 Sum_probs=217.5
Q ss_pred ccchhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCC----CCccHHHHHHHHHH
Q 005769 56 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP----EDISADVYSSLLKA 131 (678)
Q Consensus 56 ~~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~----e~~~~~~~~sll~a 131 (678)
+.+.++++++|.+.+...++-..++..++ ..+++... .+.|.+|..|+|++|+|+...+ ......++..+++.
T Consensus 374 ~~R~aa~~alg~i~~~~~~~~~~~l~~~l-~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~ 450 (852)
T 4fdd_A 374 VVKESGILVLGAIAEGCMQGMIPYLPELI-PHLIQCLS--DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450 (852)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHGGGHHHHH-HHHHHHTT--CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHHHcC--CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 34569999999998655443223555443 46666665 7889999999999999998432 33456677777887
Q ss_pred HhcccCCCCCcCcchhhhhHHHHHHHhcCCCC--CChhhHHHHHHhhcCCcc-chhhHHHHHHHHHHhhccccccc--cc
Q 005769 132 LQMLDKGDTSCYPVRASAAGAIVGLLENDYMP--PEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVAD--HI 206 (678)
Q Consensus 132 l~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p--p~~~pLLq~i~~~i~~~d-~e~~~L~qll~~~vE~g~E~va~--~l 206 (678)
|.+.+ ..||..|+.||..++++.... |-..++++.++..+...+ ....++.+.++++++...+.+.. ++
T Consensus 451 L~d~~------~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~ 524 (852)
T 4fdd_A 451 ILDSN------KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524 (852)
T ss_dssp HTCSS------HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH
T ss_pred HhCCC------HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH
Confidence 77765 799999999999999876532 456677777777765544 33345677788887665444432 33
Q ss_pred hHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccC
Q 005769 207 PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHI 286 (678)
Q Consensus 207 p~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~~~~~~a~stlLq~aw~~P~ 286 (678)
+.++..|.... +.+. +.-+.+ ...++++..+++.....-- --.+ .+.+.+-.+|+..+....
T Consensus 525 ~~l~p~l~~~~-~~l~---d~~~~~-~~~~~~l~~i~~~~g~~~~-----------~~~~--~i~~~~~~~l~~~l~~~~ 586 (852)
T 4fdd_A 525 QMLMPPLIQKW-NMLK---DEDKDL-FPLLECLSSVATALQSGFL-----------PYCE--PVYQRCVNLVQKTLAQAM 586 (852)
T ss_dssp HHHHHHHHHHH-HHSC---TTCTTH-HHHHHHHHHHHHHHGGGGH-----------HHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-Hhcc---cccHHH-HHHHHHHHHHHHHHhHhHH-----------HHHH--HHHHHHHHHHHHHHHHHH
Confidence 33333332211 2222 111222 3456777777765442110 0011 122333334433322110
Q ss_pred ---CCCccccCCCCcccccHHHHHHHHHHHccc-cchhh-hhhHHHHHHHHHHHHhhhhhhhhccccchhhhHhhhhccc
Q 005769 287 ---QPLECEVSAPPSCIDDSSMLLRSIILSVSE-RNVIE-ELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLH 361 (678)
Q Consensus 287 ---~~~E~~~~P~~~~~~D~s~lle~il~~~t~-~~~~~-~~kis~L~~vwa~~ia~w~~Wee~ed~~~fD~i~e~V~l~ 361 (678)
+..+..-.|-.....-+.+++..|++.+.. +.+++ .. .+-+.++..|+.=...--++++.++.+++.
T Consensus 587 ~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~------~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~-- 658 (852)
T 4fdd_A 587 LNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARS------NILTLMYQCMQDKMPEVRQSSFALLGDLTK-- 658 (852)
T ss_dssp HHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTC------CHHHHHHHHTTCSSHHHHHHHHHHHHHHHH--
T ss_pred HhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCC------cHHHHHHHHhCCCChhHHHHHHHHHHHHHH--
Confidence 000000011111222233555566655531 11111 11 122333444433111223455666666651
Q ss_pred ccccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHh-cCccchhhhhhhHHHHhhCCCCCcccchhhhhhHHHHHHH
Q 005769 362 SKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAIL-QYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCA 440 (678)
Q Consensus 362 ~s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~-~~p~a~~rACkl~h~lL~~~~~s~~~eg~~d~~i~~f~~a 440 (678)
.+| .+|. .|+..+...+.+.+. ..+..+..||.++..+..... .....++..++..
T Consensus 659 -~~~-~~~~---------------~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~------~~~~p~~~~il~~ 715 (852)
T 4fdd_A 659 -ACF-QHVK---------------PCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG------IEMQPYIPMVLHQ 715 (852)
T ss_dssp -HCG-GGTG---------------GGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHG------GGGGGGTHHHHHH
T ss_pred -Hhh-HHHH---------------HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh------HhHHHHHHHHHHH
Confidence 222 2222 388888888888886 444557778777776655443 3466777777777
Q ss_pred HHhhhhhccCCCCCchhHHHHHHhhhhccChHHHHHHHhhcCCCchhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHH
Q 005769 441 AFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAK 520 (678)
Q Consensus 441 A~~rl~~~~s~~~~l~KpLilvIssc~~ynP~lv~qiLek~~~~~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~ 520 (678)
.+..|++ .+.+..+..-.+..|+--...+|+.+-..| ......|..+|..+ ....||.-+.-||+.
T Consensus 716 L~~~l~~-~~~~~~~~~~a~~~igrl~~~~~~~~~~~l----~~~~~~~~~~l~~~---------~d~~e~~~a~~~l~~ 781 (852)
T 4fdd_A 716 LVEIINR-PNTPKTLLENTAITIGRLGYVCPQEVAPML----QQFIRPWCTSLRNI---------RDNEEKDSAFRGICT 781 (852)
T ss_dssp HHHHHTC-SSCCHHHHHHHHHHHHHHHHHCHHHHGGGH----HHHHHHHHHHHHTS---------CSSHHHHHHHHHHHH
T ss_pred HHHHhCC-CCCCchHHHHHHHHHHHHHHhCHHHhCccH----HHHHHHHHHHhccc---------cccHHHHHHHHHHHH
Confidence 7777754 111222333355666655555666543111 12568899988752 225789999999998
Q ss_pred HH
Q 005769 521 VV 522 (678)
Q Consensus 521 vi 522 (678)
+|
T Consensus 782 li 783 (852)
T 4fdd_A 782 MI 783 (852)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.47 E-value=3.2e-06 Score=97.11 Aligned_cols=186 Identities=13% Similarity=0.162 Sum_probs=117.0
Q ss_pred hhccchhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCC--CccHHHHHHHHHH
Q 005769 54 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE--DISADVYSSLLKA 131 (678)
Q Consensus 54 ~~~~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e--~~~~~~~~sll~a 131 (678)
+.+...++++++|++.+.+....+.++..++. ++|.+. .+.|.||.+|||++|+|+.++.. .....++..++.+
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~--~l~~l~--~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 537 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNYSDVVPGLIG--LIPRIS--ISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHA 537 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH--HGGGSC--CCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCchhhHHHHHHHH--HHHhCC--CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34456699999999998776655557777665 566444 35889999999999999986542 2233344455555
Q ss_pred HhcccCCCCCcCcchhhhhHHHHHHHhcCCC--CCChhhHHHHHHhhcCCcc---chhhHHHHHHHHHHhhcc-cccccc
Q 005769 132 LQMLDKGDTSCYPVRASAAGAIVGLLENDYM--PPEWYPLLQVIVGRIGYED---EENSILFELLSSVVGAAN-ENVADH 205 (678)
Q Consensus 132 l~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~--pp~~~pLLq~i~~~i~~~d---~e~~~L~qll~~~vE~g~-E~va~~ 205 (678)
|.+ .+||..|+.||..|.+.+.. .|-+.++++.+...+...+ .+-..+.+-+..++.+-. +++...
T Consensus 538 l~~--------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 538 LGN--------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp TTC--------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hCC--------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 532 68999999999999997643 3778888888887776533 233344666666665432 555554
Q ss_pred chHHHHHHHHHHHhcCC-CCCCChhHHHHHHHHHHHHHHHHhhhhhh
Q 005769 206 IPYIVSSLVAAISKHMH-PSSEPWPQVVERGFAALALMAQSWENFLR 251 (678)
Q Consensus 206 lp~iV~~~~~~~~k~l~-p~~~~~~Q~ve~g~~alaa~~q~~~~~~~ 251 (678)
+..++.-+...+.+.+. +.....-..+...++.+..+.++.....+
T Consensus 610 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~ 656 (963)
T 2x19_B 610 LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH 656 (963)
T ss_dssp HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 44444333222211111 11111123344678888889988865443
No 5
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.00 E-value=8.9e-05 Score=87.17 Aligned_cols=136 Identities=10% Similarity=0.173 Sum_probs=80.8
Q ss_pred ccchhhHhhHhhHHHHHHhh-ChHHHHHHHHhhc-ccCcccc-CcchhHHHhhHHHHhhhhccCCC--CccHHHHHHHHH
Q 005769 56 KDYFGVLMAYGGLQEFLREQ-KSEFTANLVRSRV-LPLYSVS-VCLPYLVASANWILGELASCLPE--DISADVYSSLLK 130 (678)
Q Consensus 56 ~~y~GaL~a~G~L~~~Lk~~-~k~~~~~l~~~rV-~P~~~~~-~~sp~LrA~A~Wv~gela~~l~e--~~~~~~~~sll~ 130 (678)
+...++++|+|+++..+.+. .+.++..++..=+ +|.+... .+.|.+++++||++|+|+.++.. +....+++.++.
T Consensus 468 ~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~ 547 (1049)
T 3m1i_C 468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFE 547 (1049)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34559999999997654332 1222333332100 4654311 24566777899999999985442 334455555566
Q ss_pred HHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC----------CChhhHHHHHHhhcCCcc-chhhHHHHHHHHHHhh
Q 005769 131 ALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP----------PEWYPLLQVIVGRIGYED-EENSILFELLSSVVGA 197 (678)
Q Consensus 131 al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p----------p~~~pLLq~i~~~i~~~d-~e~~~L~qll~~~vE~ 197 (678)
+|.+++ .+||..|+.||..|.+++... |-+.+|++.+...+..-+ .+...+.+-+..++.+
T Consensus 548 ~l~~~~------~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 548 FMHETH------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HTTSSC------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HhcCCC------HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 665544 999999999999999986521 445566665555555444 2222334444444433
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.98 E-value=0.0004 Score=77.56 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=93.9
Q ss_pred cchhhHhhHhhHHHHHH-hhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccC-----CCCccHHHHHHHHH
Q 005769 57 DYFGVLMAYGGLQEFLR-EQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-----PEDISADVYSSLLK 130 (678)
Q Consensus 57 ~y~GaL~a~G~L~~~Lk-~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l-----~e~~~~~~~~sll~ 130 (678)
...+++.++|.+..... +.-..++..+ ...+++.+. .++|.+|..|+|++|+|+.+. +......++..+++
T Consensus 385 ~r~~a~~~l~~i~~~~~~~~~~~~l~~i-l~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 385 NREAAVMAFGSIMDGPDKVQRTYYVHQA-LPSILNLMN--DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHH-HHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHcC--CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 34578888887764321 1112233332 244555444 578999999999999999743 34567778888888
Q ss_pred HHhcccCCCCCcCcchhhhhHHHHHHHhcCC------CCCChhhHHHHHHhhcCCccchhh---HHHHHHHHHHhhcccc
Q 005769 131 ALQMLDKGDTSCYPVRASAAGAIVGLLENDY------MPPEWYPLLQVIVGRIGYEDEENS---ILFELLSSVVGAANEN 201 (678)
Q Consensus 131 al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~------~pp~~~pLLq~i~~~i~~~d~e~~---~L~qll~~~vE~g~E~ 201 (678)
+|.++ ..||..|+.||..+++... ..|-..++++.++..+...|.++. ...+.+..+++...++
T Consensus 462 ~l~~~-------~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 462 GLQDH-------PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHTSC-------HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HhccC-------hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 87542 5799999999999999753 125566777777888876664332 2466777777776655
Q ss_pred ccccchHH
Q 005769 202 VADHIPYI 209 (678)
Q Consensus 202 va~~lp~i 209 (678)
+..+++.+
T Consensus 535 ~~~~~~~l 542 (861)
T 2bpt_A 535 VAETSASI 542 (861)
T ss_dssp GHHHHHHH
T ss_pred hHHHHHHH
Confidence 54444333
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.87 E-value=0.00031 Score=78.61 Aligned_cols=133 Identities=20% Similarity=0.286 Sum_probs=83.3
Q ss_pred chhhHhhHhhHHHHHH-hhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCC-----CccHHHHHHHHHH
Q 005769 58 YFGVLMAYGGLQEFLR-EQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE-----DISADVYSSLLKA 131 (678)
Q Consensus 58 y~GaL~a~G~L~~~Lk-~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e-----~~~~~~~~sll~a 131 (678)
.++++.++|.+...+. +.-..++.. +...+++.+. .+.+.+|.+|+|++|+|+...++ .....++..+++.
T Consensus 383 r~~a~~~l~~i~~~~~~~~~~~~~~~-~l~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~ 459 (876)
T 1qgr_A 383 RDAAVMAFGCILEGPEPSQLKPLVIQ-AMPTLIELMK--DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (876)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHH-HHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHH
Confidence 4466677766653322 100112222 2234455444 67899999999999999985432 3556677777777
Q ss_pred HhcccCCCCCcCcchhhhhHHHHHHHhcCC----------------CCCChhhHHHHHHhhcCCccch-hhH---HHHHH
Q 005769 132 LQMLDKGDTSCYPVRASAAGAIVGLLENDY----------------MPPEWYPLLQVIVGRIGYEDEE-NSI---LFELL 191 (678)
Q Consensus 132 l~dp~~~~~s~lPVRvsAa~Ai~sLie~~~----------------~pp~~~pLLq~i~~~i~~~d~e-~~~---L~qll 191 (678)
|.+ . ..||..|+.||..+++... ..|-..++++.++..+...+.+ ..+ ..+.+
T Consensus 460 l~~----~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l 532 (876)
T 1qgr_A 460 LSA----E---PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532 (876)
T ss_dssp TTS----C---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHH
T ss_pred HcC----C---HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHH
Confidence 655 2 5689999999999998743 3366677777777777655421 222 45666
Q ss_pred HHHHhhccc
Q 005769 192 SSVVGAANE 200 (678)
Q Consensus 192 ~~~vE~g~E 200 (678)
+.++..-..
T Consensus 533 ~~l~~~~~~ 541 (876)
T 1qgr_A 533 MEIVKNSAK 541 (876)
T ss_dssp HHHHHTCCS
T ss_pred HHHHHHCch
Confidence 666666443
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.60 E-value=0.0074 Score=67.50 Aligned_cols=324 Identities=13% Similarity=0.072 Sum_probs=173.7
Q ss_pred ccchhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCC-CC---ccHHHHHHHHHH
Q 005769 56 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-ED---ISADVYSSLLKA 131 (678)
Q Consensus 56 ~~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~-e~---~~~~~~~sll~a 131 (678)
+.+.++..+++.|...+.+. .+.. +..++...+. .+.+.+|..|+|.+|.++.... +. ....+...+++.
T Consensus 343 ~~r~~a~~~l~~l~~~~~~~---~~~~-~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~ 416 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCEDD---IVPH-VLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416 (876)
T ss_dssp CHHHHHHHHHHHHHHHHGGG---GHHH-HHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcHh---hHHH-HHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34458899999999887642 2222 2233333333 5678999999999999997443 21 223456666777
Q ss_pred HhcccCCCCCcCcchhhhhHHHHHHHhcCC----CCCChhhHHHHHHhhcCCccchhhHHHHHHHHHHhhcc--------
Q 005769 132 LQMLDKGDTSCYPVRASAAGAIVGLLENDY----MPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAAN-------- 199 (678)
Q Consensus 132 l~dp~~~~~s~lPVRvsAa~Ai~sLie~~~----~pp~~~pLLq~i~~~i~~~d~e~~~L~qll~~~vE~g~-------- 199 (678)
|.|++ ..||..|+.+|+.+.+... ..+...++|..++..+.+...=..-....|..+.+...
T Consensus 417 l~d~~------~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 417 MKDPS------VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp HTCSS------HHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred hCCCC------HHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 77766 8899999999999998754 35778899999999886631000112334444554422
Q ss_pred ------ccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhHHHHH
Q 005769 200 ------ENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKA 273 (678)
Q Consensus 200 ------E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~~~~~~a 273 (678)
+.+..+++.|+..|...+ .-....-..+-...++++..+++..... .. .. +...
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l----~~~~~~~~~~r~~~~~~l~~l~~~~~~~---------~~-~~------~~~l 550 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETT----DRPDGHQNNLRSSAYESLMEIVKNSAKD---------CY-PA------VQKT 550 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHT----TSCSSCSTTHHHHHHHHHHHHHHTCCST---------TH-HH------HHHH
T ss_pred cccccchhhhHhHHHHHHHHHHHH----hCcCcchhhHHHHHHHHHHHHHHHCchh---------hH-HH------HHHH
Confidence 346677788887774444 3111111233355777888777754310 00 00 0122
Q ss_pred HHHHHHHhhcccCCCCccccCCCCcccccH----------HHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhh
Q 005769 274 FSALLQQAWLTHIQPLECEVSAPPSCIDDS----------SMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWE 343 (678)
Q Consensus 274 ~stlLq~aw~~P~~~~E~~~~P~~~~~~D~----------s~lle~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~~We 343 (678)
+..+++..... .+++..... .+|- ...|..+++.+.. ..+.. -+-.+++.++...+...
T Consensus 551 ~~~l~~~l~~~--~~~~~~~~~----~~d~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~---~~~~l~~~l~~~l~~~~ 619 (876)
T 1qgr_A 551 TLVIMERLQQV--LQMESHIQS----TSDRIQFNDLQSLLCATLQNVLRKVQH--QDALQ---ISDVVMASLLRMFQSTA 619 (876)
T ss_dssp HHHHHHHHHHH--HTTTTSCCS----TTHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHT---THHHHHHHHHHHC----
T ss_pred HHHHHHHHHHH--HHHHhccCC----hhhHHHHHHHHHHHHHHHHHHHHHhCh--hhhhH---HHHHHHHHHHHHHHhcc
Confidence 22222222211 011111111 1221 1122222222210 11111 12234455554444321
Q ss_pred h--ccccchhhhHhhhhcccccccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHhcC--ccchhhhhhhHHHHhhC
Q 005769 344 E--TEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQY--PSATWRACSCVHTLLHV 419 (678)
Q Consensus 344 e--~ed~~~fD~i~e~V~l~~s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~~~--p~a~~rACkl~h~lL~~ 419 (678)
+ .-.+.++.+|..++.- .|. +|. +|++.+...+...+... +.-+..|+.++..+...
T Consensus 620 ~~~~v~~~a~~~l~~l~~~---~~~-~~~---------------~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 620 GSGGVQEDALMAVSTLVEV---LGG-EFL---------------KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp -CCHHHHHHHHHHHHHHHH---HGG-GGG---------------GGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHH---HHh-hHH---------------HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence 0 1133466777666532 221 121 37777888888888743 33377788888888876
Q ss_pred CCCCcccchhhhhhHHHHHHHHHhhhhh
Q 005769 420 PKYSFETEGVKQSLTISFSCAAFSRFRA 447 (678)
Q Consensus 420 ~~~s~~~eg~~d~~i~~f~~aA~~rl~~ 447 (678)
+. ..+..++..++...+..|..
T Consensus 681 ~~------~~~~~~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 681 LQ------SNIIPFCDEVMQLLLENLGN 702 (876)
T ss_dssp HG------GGGHHHHHHHHHHHHHHHTC
T ss_pred HH------HhhhhhHHHHHHHHHHHhCC
Confidence 65 45566666677766666643
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.98 E-value=0.26 Score=56.10 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=111.7
Q ss_pred chhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCC---ccHHHHHHHHHHHhc
Q 005769 58 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED---ISADVYSSLLKALQM 134 (678)
Q Consensus 58 y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~---~~~~~~~sll~al~d 134 (678)
+..+..++|.|...+.+. .+. .+...+...+. .+.+..|..|+|.+|.++...++. ....+...+++.|.|
T Consensus 338 r~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~--~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d 411 (852)
T 4fdd_A 338 RKCSAAALDVLANVYRDE---LLP-HILPLLKELLF--HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD 411 (852)
T ss_dssp HHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHT--CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC
Confidence 346777888888777542 111 12222222223 567999999999999999744332 345667777777777
Q ss_pred ccCCCCCcCcchhhhhHHHHHHHhc---CCCCCChhhHHHHHHhhcCCccch-hhHHHHHHHHHHhhccccccccchHHH
Q 005769 135 LDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIV 210 (678)
Q Consensus 135 p~~~~~s~lPVRvsAa~Ai~sLie~---~~~pp~~~pLLq~i~~~i~~~d~e-~~~L~qll~~~vE~g~E~va~~lp~iV 210 (678)
++ .-||..|+.+|+.+-+. ....+-..++++.+++.+.+.+.. -.-....|..+.+.....+..++|.|+
T Consensus 412 ~~------~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll 485 (852)
T 4fdd_A 412 KK------ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYIL 485 (852)
T ss_dssp SS------HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred CC------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHH
Confidence 76 88999999999877664 234566788999999888765411 112355666677776677888889999
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhh
Q 005769 211 SSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 247 (678)
Q Consensus 211 ~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~ 247 (678)
..|...+.+. . .+.+...++++..++++..
T Consensus 486 ~~L~~~l~~~-~------~~~~~~~~~ai~~l~~~~~ 515 (852)
T 4fdd_A 486 DTLVFAFSKY-Q------HKNLLILYDAIGTLADSVG 515 (852)
T ss_dssp HHHHHHHHHC-C------HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHh-C------hHHHHHHHHHHHHHHHHhh
Confidence 8886665321 1 3344455667777766543
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.92 E-value=0.22 Score=55.63 Aligned_cols=169 Identities=11% Similarity=0.010 Sum_probs=99.5
Q ss_pred chhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccH----HHHHHHHHHHh
Q 005769 58 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA----DVYSSLLKALQ 133 (678)
Q Consensus 58 y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~----~~~~sll~al~ 133 (678)
+..+.-+++.|...+.+. .+. .+...+...++ ...+..|..|+|.+|.++......... .+...+++.+.
T Consensus 348 r~~a~~~L~~l~~~~~~~---~~~-~l~~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~ 421 (861)
T 2bpt_A 348 SMSAGACLQLFAQNCGNH---ILE-PVLEFVEQNIT--ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN 421 (861)
T ss_dssp HHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHccHh---HHH-HHHHHHHHHcC--CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 346666777777666532 111 12223323233 566889999999999999743311222 34444555555
Q ss_pred cccCCCCCcCcchhhhhHHHHHHHhcCC----CCCChhhHHHHHHhhcCCccchhhHH---HHHHHHHHhhc----cccc
Q 005769 134 MLDKGDTSCYPVRASAAGAIVGLLENDY----MPPEWYPLLQVIVGRIGYEDEENSIL---FELLSSVVGAA----NENV 202 (678)
Q Consensus 134 dp~~~~~s~lPVRvsAa~Ai~sLie~~~----~pp~~~pLLq~i~~~i~~~d~e~~~L---~qll~~~vE~g----~E~v 202 (678)
|++ .-||..|+-+|+.+.+... ..+-+.++|..+++.+++. +..- ...|..+.+.- .+.+
T Consensus 422 d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l 492 (861)
T 2bpt_A 422 DQS------LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPI 492 (861)
T ss_dssp CSC------HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGG
T ss_pred CCc------HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhh
Confidence 554 7799999888888876532 2456778888888888653 2222 23344444432 2556
Q ss_pred cccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHh
Q 005769 203 ADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 246 (678)
Q Consensus 203 a~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~ 246 (678)
..++|.|+..+...+ .-+ ++=+++-..++.++..+....
T Consensus 493 ~~~~~~il~~L~~~l----~~~-d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 493 YNFYPALVDGLIGAA----NRI-DNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp GGGHHHHHHHHHHHH----TCS-CCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH----hCc-CcchHHHHHHHHHHHHHHHHc
Confidence 678888888775544 311 111245555677777776643
No 11
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.82 E-value=0.018 Score=68.79 Aligned_cols=61 Identities=8% Similarity=0.117 Sum_probs=41.5
Q ss_pred cchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC
Q 005769 97 CLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 161 (678)
Q Consensus 97 ~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~ 161 (678)
+.+.+|.++||++|+|+.++- .....+..++..|..-..++ .--|...|+.||..|-+.++
T Consensus 512 ~k~~v~~t~~~~lGry~~wl~--~~~~~L~~vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPRFLK--AHWNFLRTVILKLFEFMHET--HEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHHHHH--HCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHH
Confidence 345778899999999999553 23344445444444433222 13489999999999999876
No 12
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.61 E-value=0.0044 Score=60.05 Aligned_cols=178 Identities=16% Similarity=0.056 Sum_probs=112.4
Q ss_pred chhhhhccchhhHhhHhhHHHHHHh---hChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHH
Q 005769 50 SHSRIQKDYFGVLMAYGGLQEFLRE---QKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYS 126 (678)
Q Consensus 50 ~~s~~~~~y~GaL~a~G~L~~~Lk~---~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~ 126 (678)
.+++..+..++++.+++.+...-.+ ..-..+-..++.+ +. ..+.+-+|..|+-++|+++.-+.. .+.....
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~-l~----kd~~~~V~~~a~~~l~~la~~l~~-~~~~~~~ 97 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKV-IT----KDSNVVLVAMAGKCLALLAKGLAK-RFSNYAS 97 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHH-HH----HCSCHHHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHH-hc----cCCCHHHHHHHHHHHHHHHHHHhh-hHHHHHH
Confidence 3455666667999888887654111 1111112222222 21 156788999999999999974332 3334444
Q ss_pred HHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCccchhhHH---HHHHHHHHhh-ccc-c
Q 005769 127 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSIL---FELLSSVVGA-ANE-N 201 (678)
Q Consensus 127 sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d~e~~~L---~qll~~~vE~-g~E-~ 201 (678)
.++..|...-.+. .-.||..|..||..++++.. ...++..+...+.... +.+= ..++..+... +++ .
T Consensus 98 ~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~--~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 98 ACVPSLLEKFKEK--KPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKN--PSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHcCCCCc
Confidence 4444444443333 37899999999999998753 5677888888887654 3333 4455554443 344 3
Q ss_pred ccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 005769 202 VADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 248 (678)
Q Consensus 202 va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~ 248 (678)
+..++|.++..+ .+.|. ++-+.+=..+++++..+++.+..
T Consensus 170 ~~~~l~~l~p~l----~~~l~---D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 170 NKKLLKLLTTSL----VKTLN---EPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CHHHHHHHHHHH----HHHHT---SSCHHHHHHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHHHH----HHHhc---CCChHHHHHHHHHHHHHHHHcCH
Confidence 455777777777 44445 77788888889999998887764
No 13
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.84 E-value=2.8 Score=48.15 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=89.0
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC-CCCCChhhHHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPLLQVIV 174 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~-~~pp~~~pLLq~i~ 174 (678)
.+...-|-.|+|.+|.++....+.. .+....++..|.....+ ...||..+.-+|+.+-+.- ..+.-+.++|+.++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~-~~~l~~l~~~l~~l~~~---~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~ 535 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNY-SDVVPGLIGLIPRISIS---NVQLADTVMFTIGALSEWLADHPVMINSVLPLVL 535 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSC-CSHHHHHHHHGGGSCCC---SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4556778889999999998444322 23455666655433222 3569988888887665431 12356788888889
Q ss_pred hhcCCccchhhHHHHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHh
Q 005769 175 GRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 246 (678)
Q Consensus 175 ~~i~~~d~e~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~ 246 (678)
..+.+..- ...--..|..+.+.-.+.+..++|.|+..+..-+.+. ... .+..+..+++++.+..+.
T Consensus 536 ~~l~~~~V-~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~~~--~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 536 HALGNPEL-SVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHK--TSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHTTCGGG-HHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT---CSC--HHHHHHHHHHHHHHHTTS
T ss_pred HHhCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CCC--hHHHHHHHHHHHHHHhcC
Confidence 88866330 0122445556666666778889999998886666431 111 456667788888877543
No 14
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.77 E-value=0.027 Score=66.82 Aligned_cols=81 Identities=12% Similarity=-0.065 Sum_probs=57.5
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC--CChhhHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP--PEWYPLLQVI 173 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p--p~~~pLLq~i 173 (678)
.+.|.+|..+||++|+|+.+... ....+..+|..+.++-.-.-+...||..|+.|+..|++.+... |...++|+.+
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~--~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l 583 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDY--ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAML 583 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGT--CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 57889999999999999996542 2234555555555422111112789999999999999998753 7888888887
Q ss_pred HhhcC
Q 005769 174 VGRIG 178 (678)
Q Consensus 174 ~~~i~ 178 (678)
-....
T Consensus 584 ~~lL~ 588 (980)
T 3ibv_A 584 GDLLN 588 (980)
T ss_dssp TGGGC
T ss_pred HHhhc
Confidence 66543
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.49 E-value=3.3 Score=45.68 Aligned_cols=61 Identities=18% Similarity=0.122 Sum_probs=48.7
Q ss_pred cCcchhHHHhhHHHHhhhhccCCCCcc-HHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC
Q 005769 95 SVCLPYLVASANWILGELASCLPEDIS-ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 161 (678)
Q Consensus 95 ~~~sp~LrA~A~Wv~gela~~l~e~~~-~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~ 161 (678)
..++||+|.+|+|.++.++...|+... ......+.+.|.|++ .-||..|+.||..+.+++-
T Consensus 131 ~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d------~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 131 KDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN------PMVVANAVAALSEISESHP 192 (591)
T ss_dssp SCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC------HHHHHHHHHHHHHHTTSCC
T ss_pred CCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCC------hhHHHHHHHHHHHHHhhCC
Confidence 378999999999999999996675432 246677777777766 7899999999999987754
No 16
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.24 E-value=0.026 Score=63.08 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=91.6
Q ss_pred HHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 80 TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 80 ~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
+..|..+.+.=.+. .+.|+.|+.|-+.+|.++. +++...+...+.++|.+++ .-||-.|+.||..+.+.
T Consensus 104 ~~~l~in~l~kDL~--~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~------~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 104 VHLLMTNCIKNDLN--HSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSN------SYLRKKAALCAVHVIRK 172 (618)
T ss_dssp HHHHHHHHHHHHHS--CSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCC------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHH
Confidence 33444444433333 7889999999999999873 4567788999999999987 89999999999999986
Q ss_pred CCCCCChhhHHHHHHhhcCCccchhhHHHHHHHHHHhhcccc------ccccchHHHHHHHHHHHhcCCC------CCCC
Q 005769 160 DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANEN------VADHIPYIVSSLVAAISKHMHP------SSEP 227 (678)
Q Consensus 160 ~~~pp~~~pLLq~i~~~i~~~d~e~~~L~qll~~~vE~g~E~------va~~lp~iV~~~~~~~~k~l~p------~~~~ 227 (678)
+ |.....++..+..++.+.+ +.+....+..+.|....+ +...+|.++..+..-+....+| .+.|
T Consensus 173 ~--p~~v~~~~~~l~~lL~D~d--~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 173 V--PELMEMFLPATKNLLNEKN--HGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp C--GGGGGGGGGGTTTSTTCCC--HHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred C--hHHHHHHHHHHHHHhCCCC--HhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 4 4333344445556665444 667766666666654332 3334576775553333222222 4689
Q ss_pred hhHHH
Q 005769 228 WPQVV 232 (678)
Q Consensus 228 ~~Q~v 232 (678)
|.|+.
T Consensus 249 ~~q~~ 253 (618)
T 1w63_A 249 FLQVR 253 (618)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 99985
No 17
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.15 Score=50.79 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=127.3
Q ss_pred cccccCCCCCCCCcchhhhhccchhhHhhHhh-HH-H--HHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhh
Q 005769 36 PFLSRFPIPCDANASHSRIQKDYFGVLMAYGG-LQ-E--FLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGE 111 (678)
Q Consensus 36 ~~ls~f~~p~~~~~~~s~~~~~y~GaL~a~G~-L~-~--~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~ge 111 (678)
.+|+|+|..= ....+++..+....+|.+++. +. . .+..+...|.+ + .+.+.+..+ .-+.+.+|..||=++|+
T Consensus 12 ~i~~kl~~~f-~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~-~-~~~L~~~l~-~D~n~~v~~~A~~al~~ 87 (249)
T 2qk1_A 12 TILDKLPKDF-QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN-L-LGIYGHIIQ-KDANIQAVALAAQSVEL 87 (249)
T ss_dssp CCGGGSCTTH-HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH-H-HHHHHHHHH-HCSCHHHHHHHHHHHHH
T ss_pred hhhhhCChhH-HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHH-H-HHHHHHHhc-cCCCHHHHHHHHHHHHH
Confidence 4566766521 122456666667788888777 53 2 11110111111 1 122222221 36778899999999999
Q ss_pred hhccCCCCccH-HHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC--CC-CChhhHHHHHHhhcCCcc-chhhH
Q 005769 112 LASCLPEDISA-DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY--MP-PEWYPLLQVIVGRIGYED-EENSI 186 (678)
Q Consensus 112 la~~l~e~~~~-~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~--~p-p~~~pLLq~i~~~i~~~d-~e~~~ 186 (678)
++.-+....+. ..+..++-.|.+--.+. .-.||-.|..||..++++.. .+ +...++|..++..+.... .--.-
T Consensus 88 la~~l~~~~f~~~y~~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~ 165 (249)
T 2qk1_A 88 ICDKLKTPGFSKDYVSLVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRME 165 (249)
T ss_dssp HHHHHCTTTSCHHHHHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHH
Confidence 99844311455 66666666666655444 36799999999999999752 22 236688888888887664 11112
Q ss_pred HHHHHHHHHhhcc---ccccccc-hHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 005769 187 LFELLSSVVGAAN---ENVADHI-PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 248 (678)
Q Consensus 187 L~qll~~~vE~g~---E~va~~l-p~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~ 248 (678)
...++..+++... +.+..++ |.|+..+ ++.|. ++-+.+=+.++++++++.++..+
T Consensus 166 al~~l~~~~~~~~~~~~~l~~~l~~~iip~l----~~~l~---D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 166 CTQLFNASMKEEKDGYSTLQRYLKDEVVPIV----IQIVN---DTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHHCCSCSHHHHHHHTTTHHHHH----HHHHT---CSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCcchhHHHHHHHHHHHHH----HHHhc---CCCHHHHHHHHHHHHHHHHHhCH
Confidence 3556666666655 4566788 8888888 44446 78889999999999999888765
No 18
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.84 E-value=0.44 Score=57.42 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=43.8
Q ss_pred hhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCC
Q 005769 99 PYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM 162 (678)
Q Consensus 99 p~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~ 162 (678)
+.++++.||++|+|..++- .....+..++..|..-+.+. .-.|+-.|+.|+..+-+.|..
T Consensus 540 ~~vas~i~~vlgrY~~wl~--~h~~~L~~vl~~L~~~m~~~--~~~vq~aA~~af~~i~~~C~~ 599 (1073)
T 3gjx_A 540 AIIASNIMYIVGQYPRFLR--AHWKFLKTVVNKLFEFMHET--HDGVQDMACDTFIKIAQKCRR 599 (1073)
T ss_dssp HHHHHHHHHHHHHCHHHHH--HCHHHHHHHHHHHHHHTTCC--STTHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHhhhHHHHH--hCHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHH
Confidence 3577778999999999765 34555555555555444332 378999999999999999874
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.69 E-value=0.29 Score=54.10 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=95.7
Q ss_pred HhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCc
Q 005769 65 YGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYP 144 (678)
Q Consensus 65 ~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lP 144 (678)
|=++..+++. .+ ....++.+.+.-.++ .+.|++|+.|--.+|. +..+++...+...+.++|.+++ .-
T Consensus 70 yl~l~~~~~~-~~-e~~~l~~n~l~kdL~--~~n~~ir~~AL~~L~~---i~~~~~~~~l~~~l~~~L~d~~------~~ 136 (591)
T 2vgl_B 70 YLYLMNYAKS-QP-DMAIMAVNSFVKDCE--DPNPLIRALAVRTMGC---IRVDKITEYLCEPLRKCLKDED------PY 136 (591)
T ss_dssp HHHHHHHHHH-SH-HHHHTTHHHHGGGSS--SSSHHHHHHHHHHHHT---CCSGGGHHHHHHHHHHHSSCSC------HH
T ss_pred HHHHHHHccc-Cc-hHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHcCCCC------hH
Confidence 3344444443 33 334455566655555 7889999999655554 4466788888899999998877 89
Q ss_pred chhhhhHHHHHHHhcCCCCCChh--hHHHHHHhhcCCccchhhHHHHHHHHHHhhccccc----cccchHHHHHHHHHHH
Q 005769 145 VRASAAGAIVGLLENDYMPPEWY--PLLQVIVGRIGYEDEENSILFELLSSVVGAANENV----ADHIPYIVSSLVAAIS 218 (678)
Q Consensus 145 VRvsAa~Ai~sLie~~~~pp~~~--pLLq~i~~~i~~~d~e~~~L~qll~~~vE~g~E~v----a~~lp~iV~~~~~~~~ 218 (678)
||-.|+.||..+.+.+ |..+. .++..+...+.+.+ +......+..+.+...++- ....+.++..+...+.
T Consensus 137 VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~d--~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~ 212 (591)
T 2vgl_B 137 VRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSN--PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN 212 (591)
T ss_dssp HHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSCSC--HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCCCC--hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC
Confidence 9999999999999954 43343 36777778887544 7788777777777765542 2222444545543332
Q ss_pred hcCCCCCCChhHH
Q 005769 219 KHMHPSSEPWPQV 231 (678)
Q Consensus 219 k~l~p~~~~~~Q~ 231 (678)
...+|.|+
T Consensus 213 -----~~~~~~q~ 220 (591)
T 2vgl_B 213 -----ECTEWGQI 220 (591)
T ss_dssp -----HCCHHHHH
T ss_pred -----CCCchHHH
Confidence 13678776
No 20
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=94.41 E-value=0.15 Score=60.53 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=104.0
Q ss_pred hhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCC
Q 005769 59 FGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKG 138 (678)
Q Consensus 59 ~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~ 138 (678)
.|+|.+++.+.....+.=..+... +..++++.+. .+.+.+|.+|+-.+|.++...++..+..+...++..|....
T Consensus 152 ~~al~~l~~~~~~~~~~l~~~~~~-ll~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~-- 226 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND-- 226 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTHHH-HHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHH-HHHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCC--
Confidence 477777666664333321224433 4456777666 56789999999999999998887777888999999998864
Q ss_pred CCCcCcchhhhhHHHHHHHhcCCC--CCChhhHHHHHHhhcCCccch-hhHHHHHHHHHHhhccccccccchHHHHHHHH
Q 005769 139 DTSCYPVRASAAGAIVGLLENDYM--PPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSSLVA 215 (678)
Q Consensus 139 ~~s~lPVRvsAa~Ai~sLie~~~~--pp~~~pLLq~i~~~i~~~d~e-~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~ 215 (678)
+..+|..|..+|..+.+.... .|-...+++.++..+.+++.+ -....+.+..+.+.-.+.+..++|.|+..+
T Consensus 227 ---~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~l-- 301 (1230)
T 1u6g_C 227 ---SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC-- 301 (1230)
T ss_dssp ---SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH--
T ss_pred ---chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHH--
Confidence 357999999999999987432 245556666667777655422 125578888888887777777777777666
Q ss_pred HHHhcCC
Q 005769 216 AISKHMH 222 (678)
Q Consensus 216 ~~~k~l~ 222 (678)
.+.|.
T Consensus 302 --l~~l~ 306 (1230)
T 1u6g_C 302 --LKYLT 306 (1230)
T ss_dssp --TTCCC
T ss_pred --HHHhC
Confidence 66664
No 21
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.09 E-value=0.17 Score=48.79 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=83.1
Q ss_pred chhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccC
Q 005769 58 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDK 137 (678)
Q Consensus 58 y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~ 137 (678)
..+++.++|.|..-|+..=..|+.. +...++..+. .+.+.+|..|+=.+..+..+.+ ...++..++.+|.+.+
T Consensus 74 ~~~a~~~l~~la~~l~~~~~~~~~~-ilp~ll~~l~--d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~- 146 (242)
T 2qk2_A 74 VAMAGKCLALLAKGLAKRFSNYASA-CVPSLLEKFK--EKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKN- 146 (242)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHH-HHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSC-
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCC-
Confidence 4489999999998887632334444 3455666666 6788999999999999988654 4667888888887665
Q ss_pred CCCCcCcchhhhhHHHHHHHhcCC----CCCChhhHHHHHHhhcCCcc
Q 005769 138 GDTSCYPVRASAAGAIVGLLENDY----MPPEWYPLLQVIVGRIGYED 181 (678)
Q Consensus 138 ~~~s~lPVRvsAa~Ai~sLie~~~----~pp~~~pLLq~i~~~i~~~d 181 (678)
..||..+...|..++.+.. ..+.+..++..+++.+.+..
T Consensus 147 -----~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~ 189 (242)
T 2qk2_A 147 -----PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPD 189 (242)
T ss_dssp -----HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSC
T ss_pred -----hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCC
Confidence 6899999999999887742 23556677777777776555
No 22
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=94.08 E-value=0.02 Score=58.87 Aligned_cols=13 Identities=8% Similarity=-0.074 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhh
Q 005769 539 CYASLMEAAVQLK 551 (678)
Q Consensus 539 c~~slle~~~~lk 551 (678)
+...+.+.+.++|
T Consensus 321 ~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 321 VVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcC
Confidence 3555555565555
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.98 E-value=0.067 Score=54.80 Aligned_cols=110 Identities=14% Similarity=0.017 Sum_probs=79.3
Q ss_pred ccchhhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhc-cCCC---CccHHHHHHHHHH
Q 005769 56 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CLPE---DISADVYSSLLKA 131 (678)
Q Consensus 56 ~~y~GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~-~l~e---~~~~~~~~sll~a 131 (678)
....++..+++.|...+.+ ..+ ..+..+|...+. .+.+..|..|++.+|.++. |.++ .....++..+++.
T Consensus 343 ~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~ 416 (462)
T 1ibr_B 343 NPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416 (462)
T ss_dssp SHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3455888889999888763 122 223344444444 5678999999999999997 5433 2335688889999
Q ss_pred HhcccCCCCCcCcchhhhhHHHHHHHhcCCC----CCChhhHHHHHHhhc
Q 005769 132 LQMLDKGDTSCYPVRASAAGAIVGLLENDYM----PPEWYPLLQVIVGRI 177 (678)
Q Consensus 132 l~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~----pp~~~pLLq~i~~~i 177 (678)
|.|++ .-||..|+.||+.+.+.... ++...++|+.+++.+
T Consensus 417 l~d~~------~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 417 MKDPS------VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp GGCSC------HHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred hcCCC------HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 98877 88999999999999986532 477888887776654
No 24
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.74 E-value=0.22 Score=59.16 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=95.3
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC--------CChh
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP--------PEWY 167 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p--------p~~~ 167 (678)
.+.+.+|..|.=.+|+++...++.....+...++.+|.+++ -.||..|+.+|+.+.++.... +.|.
T Consensus 59 d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~------~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~ 132 (1230)
T 1u6g_C 59 DKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDK------EQLRDISSIGLKTVIGELPPASSGSALAANVCK 132 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSS------SHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHhCCCcccccchHHHHHH
Confidence 67899999999999999986676666778888888888877 678999999999999875433 1489
Q ss_pred hHHHHHHhhcCC-ccch-hhHHHHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHH
Q 005769 168 PLLQVIVGRIGY-EDEE-NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 245 (678)
Q Consensus 168 pLLq~i~~~i~~-~d~e-~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~ 245 (678)
.++..++..+.+ ++.+ -.-....|..+.+...+.+..++|.++..| .+.|. .++ +.+=+++..+++.++..
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l----~~~L~-~~~--~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL----LPQLT-SPR--LAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHH----GGGGG-CSS--HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH----HHHHc-CCc--HHHHHHHHHHHHHHHHh
Confidence 999999998874 3311 112245555555554556666777777777 44444 233 34445566677666544
No 25
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=93.59 E-value=0.5 Score=54.19 Aligned_cols=128 Identities=12% Similarity=0.121 Sum_probs=64.0
Q ss_pred hhhh-hhHHHHhhCCCCCcccchhhhhhHHHHHHHHHhhhhhccCCCCCchhHHHHHHhhhhccChHHHHH---HHhhcC
Q 005769 407 WRAC-SCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEG---ILKKDE 482 (678)
Q Consensus 407 ~rAC-kl~h~lL~~~~~s~~~eg~~d~~i~~f~~aA~~rl~~~~s~~~~l~KpLilvIssc~~ynP~lv~q---iLek~~ 482 (678)
-+.| .|+++||..-+.. |+-+ .|+++-..-|..|.|+-..++.+.+-++.+.|...|....+ +|++--
T Consensus 131 ~~~~~~LV~aIL~~~~W~----~r~~----~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV~~F~~~~~~~~~~H~~L~~Il 202 (649)
T 3tj1_A 131 SSRGTFLIQSIINFEKWW----ELPP----HTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIKQTVCHHDMLKYFL 202 (649)
T ss_dssp SGGGHHHHHHHHTCTTGG----GSCH----HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhCCchhc----cCCH----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHH
Confidence 4677 5999999882211 1222 23333334444555555668999888888888877654222 111110
Q ss_pred CCchhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHh
Q 005769 483 DGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQL 550 (678)
Q Consensus 483 ~~~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie~Llsl~~~~~~~l~~c~~slle~~~~l 550 (678)
. .+-.....|..+=.+.|.+. .+-+...++..+ .||.+-.-.++.-.+++..+++.++.+
T Consensus 203 ~-lvP~s~~~L~~iL~~~FP~~----~~s~~~~~~Yv~---NLLrl~~Y~PeL~~~Il~LIierliki 262 (649)
T 3tj1_A 203 R-MIPSSMGFIDTYLAKFFPNK----NDTRRKLVNYTS---NLLKLRGYCSELGFQIWSLLIEKIISI 262 (649)
T ss_dssp H-HCGGGHHHHHHHHHHTCCCT----TSCHHHHHHHHH---HHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred H-HcCCCHHHHHHHHHHhCCCC----CCchhHHHHHHH---HHHHHHhhchHHHHHHHHHHHHHHHHh
Confidence 0 11222222333223346653 222222223332 222322222256678888888888876
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=93.48 E-value=0.063 Score=55.09 Aligned_cols=94 Identities=16% Similarity=0.251 Sum_probs=60.0
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChh----
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWY---- 167 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~---- 167 (678)
.+.+.+|..|+|++|.++...++.. ...+...+++.|.+++ ..||..|+.||+.+..... +....
T Consensus 287 ~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~------~~v~~~a~~~L~~l~~~~~-~~~~~~l~~ 359 (450)
T 2jdq_A 287 SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE------FRTRKEAAWAITNATSGGS-AEQIKYLVE 359 (450)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC------HHHHHHHHHHHHHHHcCCC-HHHHHHHHH
Confidence 5678999999999999986433221 1246677888888765 7899999999999998641 21122
Q ss_pred -hHHHHHHhhcCCccchhhHH---HHHHHHHHhhc
Q 005769 168 -PLLQVIVGRIGYEDEENSIL---FELLSSVVGAA 198 (678)
Q Consensus 168 -pLLq~i~~~i~~~d~e~~~L---~qll~~~vE~g 198 (678)
.+++.++..+...+.+ +. ...|..+.+.+
T Consensus 360 ~~~i~~L~~ll~~~~~~--v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSK--IVQVALNGLENILRLG 392 (450)
T ss_dssp HTCHHHHHHGGGSSCHH--HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHH--HHHHHHHHHHHHHHhc
Confidence 1344455555555422 32 34445555544
No 27
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=93.35 E-value=0.23 Score=52.64 Aligned_cols=80 Identities=10% Similarity=-0.082 Sum_probs=56.8
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHh
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 175 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~ 175 (678)
...+..|..|+-++|.++...++.....+...+.+.+.|++ .-||..|+.+|+.+.+.......+..++..+..
T Consensus 137 ~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~------~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 210 (588)
T 1b3u_A 137 GDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN 210 (588)
T ss_dssp CSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSC------HHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHH
Confidence 45678899999999999987666555666666666666665 889999999999999875433223445555555
Q ss_pred hcCCcc
Q 005769 176 RIGYED 181 (678)
Q Consensus 176 ~i~~~d 181 (678)
.+++++
T Consensus 211 ~~~d~~ 216 (588)
T 1b3u_A 211 LASDEQ 216 (588)
T ss_dssp HHTCSC
T ss_pred HhcCCc
Confidence 555554
No 28
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.23 Score=49.38 Aligned_cols=140 Identities=7% Similarity=0.028 Sum_probs=95.5
Q ss_pred hhhHhhHhhHHHHHH-hh-ChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhc-cCCCC---ccHHHHHHHHHHH
Q 005769 59 FGVLMAYGGLQEFLR-EQ-KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CLPED---ISADVYSSLLKAL 132 (678)
Q Consensus 59 ~GaL~a~G~L~~~Lk-~~-~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~-~l~e~---~~~~~~~sll~al 132 (678)
.+++.++|.|+..|+ .. .+.|...+ ...||..+. ...+-++..|.-.+-.+.. +.|.. ....++..++.+|
T Consensus 79 ~~A~~al~~la~~l~~~~f~~~y~~~l-lp~ll~~l~--dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l 155 (249)
T 2qk1_A 79 ALAAQSVELICDKLKTPGFSKDYVSLV-FTPLLDRTK--EKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM 155 (249)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHHH-HHHHHHGGG--CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHH-HHHHHHHHc--CCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH
Confidence 489999999999997 32 22466654 346666666 5557777777776666665 43221 2457888888888
Q ss_pred hcccCCCCCcCcchhhhhHHHHHHHhcCCCC-----CCh-hhHHHHHHhhcCCccchhhHHHHHHHHHHh----hccccc
Q 005769 133 QMLDKGDTSCYPVRASAAGAIVGLLENDYMP-----PEW-YPLLQVIVGRIGYEDEENSILFELLSSVVG----AANENV 202 (678)
Q Consensus 133 ~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p-----p~~-~pLLq~i~~~i~~~d~e~~~L~qll~~~vE----~g~E~v 202 (678)
...+ .+||..+...|+.++++...+ +.+ .+++..+.+.+.+.+.+ +-..-+.++.. +|++++
T Consensus 156 ~~k~------~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~--VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 156 KHKT------PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPA--IRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp TCSS------HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHH--HHHHHHHHHHHHHHHHCSGGG
T ss_pred cCCC------hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHhCHHHH
Confidence 7776 699999999999999998753 224 56666667777766633 55444444444 677777
Q ss_pred cccchHH
Q 005769 203 ADHIPYI 209 (678)
Q Consensus 203 a~~lp~i 209 (678)
..++|.+
T Consensus 228 ~p~l~~L 234 (249)
T 2qk1_A 228 VKTLEHL 234 (249)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 7776554
No 29
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.11 E-value=0.075 Score=54.71 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=59.0
Q ss_pred HhhHhhHHHHHHhhChHHHHHHHH----hhccc-CccccCcchhHHHhhHHHHhhhhccCCCC----ccHHHHHHHHHHH
Q 005769 62 LMAYGGLQEFLREQKSEFTANLVR----SRVLP-LYSVSVCLPYLVASANWILGELASCLPED----ISADVYSSLLKAL 132 (678)
Q Consensus 62 L~a~G~L~~~Lk~~~k~~~~~l~~----~rV~P-~~~~~~~sp~LrA~A~Wv~gela~~l~e~----~~~~~~~sll~al 132 (678)
+.|.+.|..+....+ ....+.. ..+++ +.. ++.|-+|..|+|++|.++.--|+. ........|++.|
T Consensus 58 ~~Al~~L~~lv~~~d--na~~~~~~G~l~~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 58 EGALELLADLCENMD--NAADFCQLSGMHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh--hHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 456677777766543 1112222 33444 444 788999999999999998633321 1123666777777
Q ss_pred hcccCCCCCcCcchhhhhHHHHHHHhcCC
Q 005769 133 QMLDKGDTSCYPVRASAAGAIVGLLENDY 161 (678)
Q Consensus 133 ~dp~~~~~s~lPVRvsAa~Ai~sLie~~~ 161 (678)
.... ...||..|+.||++++++..
T Consensus 134 ~~~~-----~~~v~~~A~~ALsnl~~~~~ 157 (296)
T 1xqr_A 134 DRDA-----CDTVRVKALFAISCLVREQE 157 (296)
T ss_dssp HHCS-----CHHHHHHHHHHHHHHHTTCH
T ss_pred ccCC-----CHHHHHHHHHHHHHHHcCCc
Confidence 6421 26799999999999998653
No 30
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=93.03 E-value=0.14 Score=54.17 Aligned_cols=59 Identities=17% Similarity=0.037 Sum_probs=43.3
Q ss_pred CcchhHHHhhHHHHhhhhccCCCC-ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPED-ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~-~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
.+...+|..|+..+|.++..++.. ....+...+++.|.|++ ..||-.|+.+|+.+++..
T Consensus 413 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------~~Vr~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV------YAIREAATSNLKKLVEKF 472 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSS------HHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHh
Confidence 456678899999999988743332 23456777777777665 789999999999888763
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.60 E-value=0.12 Score=55.41 Aligned_cols=96 Identities=18% Similarity=0.317 Sum_probs=60.9
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhh---
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYP--- 168 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~p--- 168 (678)
.+.+.+|..|+|++|.++...++.. ...+...+++.|.+++ ..||..|+.||+.+...+...|+...
T Consensus 352 ~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~------~~v~~~a~~aL~~l~~~~~~~~~~~~~l~ 425 (530)
T 1wa5_B 352 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE------YKTKKEACWAISNASSGGLQRPDIIRYLV 425 (530)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHTTTCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC------HHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4578999999999999997544321 1235567777777665 78999999999999987532112111
Q ss_pred ---HHHHHHhhcCCccchhhHH---HHHHHHHHhhcc
Q 005769 169 ---LLQVIVGRIGYEDEENSIL---FELLSSVVGAAN 199 (678)
Q Consensus 169 ---LLq~i~~~i~~~d~e~~~L---~qll~~~vE~g~ 199 (678)
+++.++..+...+ +.+. ...|..+.+.+.
T Consensus 426 ~~~~l~~L~~ll~~~~--~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 426 SQGCIKPLCDLLEIAD--NRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HTTCHHHHHHHTTTCC--HHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhhh
Confidence 3444555555554 2233 445555555543
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=91.64 E-value=0.082 Score=48.95 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=43.3
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
.+.+.+|..|+|++|.++.-.++.. .......+++.|.+++ ..||..|+.||+++..++
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~ 127 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------EQILQEALWALSNIASGG 127 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSC------HHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCc------HHHHHHHHHHHHHHHcCC
Confidence 5678999999999999985333210 1124567777777765 889999999999998643
No 33
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=90.17 E-value=0.32 Score=42.74 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=41.7
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
.+.|.+|+.|+|.+|++.. ......++++|.|++ .-||..|+.||+.+
T Consensus 53 d~~~~vR~~A~~aL~~~~~-------~~a~~~L~~~L~d~~------~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD-------ERAVEPLIKLLEDDS------GFVRSGAARSLEQI 100 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS-------HHHHHHHHHHHHHCC------THHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCC------HHHHHHHHHHHHHh
Confidence 5789999999999999873 457788889998877 78999999999986
No 34
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=88.78 E-value=1 Score=41.92 Aligned_cols=81 Identities=20% Similarity=0.106 Sum_probs=50.7
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHh
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 175 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~ 175 (678)
.+.|.+|..|.|.+|++.. ......+++.|.+++ .-||..|+.||+.+-. +... +.+++
T Consensus 61 ~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~~~~------~~vr~~a~~aL~~~~~-----~~~~---~~L~~ 119 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIGD-------ERAVEPLIKALKDED------GWVRQSAAVALGQIGD-----ERAV---EPLIK 119 (211)
T ss_dssp CSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSS------HHHHHHHHHHHHHHCC-----GGGH---HHHHH
T ss_pred CCCHHHHHHHHHHHHhhCC-------HHHHHHHHHHHcCCC------HHHHHHHHHHHHHhCc-----HHHH---HHHHH
Confidence 4577888888888888763 235667777777766 6788888888887621 2222 33344
Q ss_pred hcCCccchhhHHHHHHHHHHhhcc
Q 005769 176 RIGYEDEENSILFELLSSVVGAAN 199 (678)
Q Consensus 176 ~i~~~d~e~~~L~qll~~~vE~g~ 199 (678)
.+.+.+ +.+-...+..+...+.
T Consensus 120 ~l~d~~--~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 120 ALKDED--WFVRIAAAFALGEIGD 141 (211)
T ss_dssp HTTCSS--HHHHHHHHHHHHHHCC
T ss_pred HHhCCC--HHHHHHHHHHHHHcCC
Confidence 454444 4455555555555554
No 35
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=87.61 E-value=4.5 Score=41.20 Aligned_cols=114 Identities=14% Similarity=0.222 Sum_probs=77.1
Q ss_pred cchhHHHhhHHHHhhhh---------------ccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC
Q 005769 97 CLPYLVASANWILGELA---------------SCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 161 (678)
Q Consensus 97 ~sp~LrA~A~Wv~gela---------------~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~ 161 (678)
..+.+|..|+=+++.+- ..++++....+-+.++.+|.+++ --| -.++.+|+.+...+.
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~------~~v-~~~~~~i~~ia~~~~ 121 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET------YRP-SSASQCVAGIACAEI 121 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC------SSS-CSHHHHHHHHHHHHG
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC------chh-hHHHHHHHHHHHHhc
Confidence 35678888887777663 23566666777788888888765 445 778889999988764
Q ss_pred CCCChhhHHHHHHhhcCCc--cch-hhHHHHHHHHHHhhc-cccccccchHHHHHHHHHH
Q 005769 162 MPPEWYPLLQVIVGRIGYE--DEE-NSILFELLSSVVGAA-NENVADHIPYIVSSLVAAI 217 (678)
Q Consensus 162 ~pp~~~pLLq~i~~~i~~~--d~e-~~~L~qll~~~vE~g-~E~va~~lp~iV~~~~~~~ 217 (678)
....|..+++.++..+... +.. -....+.|..+.+.- .+.+..+++.++..|..-+
T Consensus 122 ~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l 181 (462)
T 1ibr_B 122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM 181 (462)
T ss_dssp GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHh
Confidence 3357888888888888765 411 113466677777643 4445567788887774444
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=87.47 E-value=0.14 Score=48.56 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=43.3
Q ss_pred CcchhHHHhhHHHHhhhhccCCCC----ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~----~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
.+.+.+|..|+|+++.++...+.. ....+...+++.|.+++ ..||..|+.+|++|....
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------EQILQEALWALSNIASGG 169 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC------HHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC------HHHHHHHHHHHHHHHcCC
Confidence 567899999999999998643311 11125566677776554 789999999999998754
No 37
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.65 E-value=1.1 Score=41.39 Aligned_cols=48 Identities=29% Similarity=0.262 Sum_probs=23.9
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
.+.|.+|..|+|.+|++.. ......+++.|.+++ .-||..|+.||+.+
T Consensus 87 d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~------~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDED------WFVRIAAAFALGEI 134 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSS------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCC------HHHHHHHHHHHHHh
Confidence 3445555555555555432 123444445554444 45555555555554
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=86.60 E-value=4 Score=39.53 Aligned_cols=84 Identities=8% Similarity=-0.056 Sum_probs=54.7
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHh
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 175 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~ 175 (678)
.+.+.+|..|.|.+|+++ ...+...+++.|.+++ ..||..|+.+|+.+-. .+....+++..+.+
T Consensus 34 ~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~d~~------~~vR~~A~~aL~~l~~---~~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRG-------GQDAVRLAIEFCSDKN------YIRRDIGAFILGQIKI---CKKCEDNVFNILNN 97 (280)
T ss_dssp CSSHHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSS------HHHHHHHHHHHHHSCC---CTTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccC-------CchHHHHHHHHHcCCC------HHHHHHHHHHHHHhcc---ccccchHHHHHHHH
Confidence 567899999999999987 3568888999998887 7899999999987632 23334444444432
Q ss_pred h-cCCccchhhHHHHHHHHHHhh
Q 005769 176 R-IGYEDEENSILFELLSSVVGA 197 (678)
Q Consensus 176 ~-i~~~d~e~~~L~qll~~~vE~ 197 (678)
. .++++ +.+-...+..+...
T Consensus 98 ~~~~d~~--~~vr~~a~~aL~~l 118 (280)
T 1oyz_A 98 MALNDKS--ACVRATAIESTAQR 118 (280)
T ss_dssp HHHHCSC--HHHHHHHHHHHHHH
T ss_pred HHhcCCC--HHHHHHHHHHHHHH
Confidence 2 23333 33444444444443
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=86.59 E-value=0.43 Score=53.59 Aligned_cols=136 Identities=16% Similarity=0.195 Sum_probs=88.5
Q ss_pred HHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHH--hcccCCCCCcCcchhhhhHHHHHHHh
Q 005769 81 ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKAL--QMLDKGDTSCYPVRASAAGAIVGLLE 158 (678)
Q Consensus 81 ~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al--~dp~~~~~s~lPVRvsAa~Ai~sLie 158 (678)
..|+.+-+-=.+. .+.|+.|+.|-=.+|.+.. +++...+...+.++| .+++ .-||=.|+.|+..+.+
T Consensus 109 ~~L~iN~l~kDl~--~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~~------~~VRK~A~~al~kl~~ 177 (621)
T 2vgl_A 109 IRLINNAIKNDLA--SRNPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDTM------DSVKQSAALCLLRLYR 177 (621)
T ss_dssp HHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSSC------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHHHH
Confidence 3444444444444 7789999999988877743 457778888899999 7777 8899999999999999
Q ss_pred cCCCC-C--ChhhHHHHHHhhcCCccchhhHHHHHHHHHHhhc---cccccccchHHHHHHHHHHHhcCCC--------C
Q 005769 159 NDYMP-P--EWYPLLQVIVGRIGYEDEENSILFELLSSVVGAA---NENVADHIPYIVSSLVAAISKHMHP--------S 224 (678)
Q Consensus 159 ~~~~p-p--~~~pLLq~i~~~i~~~d~e~~~L~qll~~~vE~g---~E~va~~lp~iV~~~~~~~~k~l~p--------~ 224 (678)
.+... + .|.+.|+ +.+++ .++....-.+..+.|.. .+.+...+|.++..+..-+...--| .
T Consensus 178 ~~p~~~~~~~~~~~l~---~lL~d--~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~ 252 (621)
T 2vgl_A 178 TSPDLVPMGDWTSRVV---HLLND--QHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFV 252 (621)
T ss_dssp HCGGGCCCCSCHHHHH---HHTTC--SCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTE
T ss_pred hChhhcCchhHHHHHH---HHhCC--CCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCC
Confidence 65322 2 5666664 45544 44777765555555553 3334455677776554333221111 2
Q ss_pred CCChhHHH
Q 005769 225 SEPWPQVV 232 (678)
Q Consensus 225 ~~~~~Q~v 232 (678)
+.||.|+.
T Consensus 253 ~~~w~qi~ 260 (621)
T 2vgl_A 253 PAPWLSVK 260 (621)
T ss_dssp ESHHHHHH
T ss_pred CCchHHHH
Confidence 37999985
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=86.47 E-value=5.9 Score=38.33 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=59.5
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHH-HHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLL-KALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 174 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll-~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~ 174 (678)
.+.+.+|..|.|.+|++.... .....+..-+. .++.+++ .-||..|+.||+.+-..+ +.....++..++
T Consensus 65 d~~~~vR~~A~~aL~~l~~~~--~~~~~l~~~L~~~~~~d~~------~~vr~~a~~aL~~l~~~~--~~~~~~~~~~L~ 134 (280)
T 1oyz_A 65 DKNYIRRDIGAFILGQIKICK--KCEDNVFNILNNMALNDKS------ACVRATAIESTAQRCKKN--PIYSPKIVEQSQ 134 (280)
T ss_dssp CSSHHHHHHHHHHHHHSCCCT--TTHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHHHHC--GGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcccc--ccchHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHhccC--CcccHHHHHHHH
Confidence 567899999999999987421 22233333333 2345555 779999999999986433 222335556666
Q ss_pred hhcCCccchhhHHHHHHHHHHhhccccccccchHHH
Q 005769 175 GRIGYEDEENSILFELLSSVVGAANENVADHIPYIV 210 (678)
Q Consensus 175 ~~i~~~d~e~~~L~qll~~~vE~g~E~va~~lp~iV 210 (678)
..+.+.+ +.+-......+...|++. .+|.++
T Consensus 135 ~~l~d~~--~~vR~~a~~aL~~~~~~~---~~~~L~ 165 (280)
T 1oyz_A 135 ITAFDKS--TNVRRATAFAISVINDKA---TIPLLI 165 (280)
T ss_dssp HHTTCSC--HHHHHHHHHHHHTC---C---CHHHHH
T ss_pred HHhhCCC--HHHHHHHHHHHHhcCCHH---HHHHHH
Confidence 6666555 445556666666665532 345544
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.16 E-value=3.4 Score=38.26 Aligned_cols=48 Identities=29% Similarity=0.306 Sum_probs=30.7
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
.+.+.+|..|.+.+|++.. ......+++.|.+++ ..||..|+.+|+.+
T Consensus 30 ~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~------~~vr~~a~~aL~~~ 77 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDED------AWVRRAAADALGQI 77 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSC------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCC------HHHHHHHHHHHHhh
Confidence 4566777777777776654 234555666666654 66777777777665
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.63 E-value=4.6 Score=37.10 Aligned_cols=48 Identities=29% Similarity=0.306 Sum_probs=22.6
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 156 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sL 156 (678)
.+.|.+|..|.+.+|++.. ......+++.|.+++ ..||..|+.+|+.+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~------~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDED------AWVRRAAADALGQI 72 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSS------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCC------HHHHHHHHHHHHhh
Confidence 4445555555555555442 123344444444443 44555555555443
No 43
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=85.19 E-value=0.71 Score=43.13 Aligned_cols=58 Identities=26% Similarity=0.190 Sum_probs=43.1
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
.+.+.+|..|+|+++.++...++.. .......+++.|.+++ ..||..|+.+|++|...
T Consensus 55 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~------~~v~~~a~~~L~~l~~~ 116 (252)
T 4hxt_A 55 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD------SEVQKEAARALANIASG 116 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSS------HHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCC------HHHHHHHHHHHHHHHcC
Confidence 5568999999999999986433211 1135666777777554 88999999999999864
No 44
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=85.03 E-value=1.4 Score=41.59 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=66.1
Q ss_pred hhHhhHHHHHHhhChHHHHHHHHhhccc----CccccCcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhc
Q 005769 63 MAYGGLQEFLREQKSEFTANLVRSRVLP----LYSVSVCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQM 134 (678)
Q Consensus 63 ~a~G~L~~~Lk~~~k~~~~~l~~~rV~P----~~~~~~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~d 134 (678)
.|..+|..++.. ..+....++...++| +.. .+.+-++..|+|+++.++.-.++.. .......+++.|.+
T Consensus 31 ~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~ 107 (252)
T 4db8_A 31 SATRKFSQILSD-GNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 107 (252)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 466666666655 323444444433333 333 5568999999999999986433211 11255666777766
Q ss_pred ccCCCCCcCcchhhhhHHHHHHHhcCCCC-CCh--hhHHHHHHhhcCCcc
Q 005769 135 LDKGDTSCYPVRASAAGAIVGLLENDYMP-PEW--YPLLQVIVGRIGYED 181 (678)
Q Consensus 135 p~~~~~s~lPVRvsAa~Ai~sLie~~~~p-p~~--~pLLq~i~~~i~~~d 181 (678)
++ ..||..|+.||++|..+.... ..+ ...++.++..+...+
T Consensus 108 ~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 151 (252)
T 4db8_A 108 PN------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151 (252)
T ss_dssp SC------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred CC------HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC
Confidence 54 789999999999997654321 000 024555666666554
No 45
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=83.91 E-value=1 Score=46.11 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=54.4
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC-CCC--CChhh
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMP--PEWYP 168 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~-~~p--p~~~p 168 (678)
.+.+-+|..|+|++|.++.-.++.. ...+...+++.|.+.. ...||..|+.+|+++.++. ..+ .-...
T Consensus 118 ~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 192 (450)
T 2jdq_A 118 SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN-----RLTMTRNAVWALSNLCRGKSPPPEFAKVSP 192 (450)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC-----CHHHHHHHHHHHHHHHCCSSSCCCGGGTGG
T ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC-----CHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 5678999999999999997443211 1124556666666321 3789999999999999865 222 22355
Q ss_pred HHHHHHhhcCCcc
Q 005769 169 LLQVIVGRIGYED 181 (678)
Q Consensus 169 LLq~i~~~i~~~d 181 (678)
++..++..+...+
T Consensus 193 ~l~~L~~~l~~~~ 205 (450)
T 2jdq_A 193 CLNVLSWLLFVSD 205 (450)
T ss_dssp GHHHHHHHTTCCC
T ss_pred HHHHHHHHHccCC
Confidence 6666677776655
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=83.85 E-value=0.88 Score=42.51 Aligned_cols=59 Identities=25% Similarity=0.183 Sum_probs=43.7
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
.+.+.+|..|+|+++.++...++.. .......+++.|.+++ ..||..|+.+|+++....
T Consensus 97 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~------~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 97 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD------SEVQKEAARALANIASGP 159 (252)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC------HHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC------HHHHHHHHHHHHHHHcCC
Confidence 5678999999999999986333211 1135667777777655 789999999999998753
No 47
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=82.60 E-value=6.2 Score=45.59 Aligned_cols=145 Identities=10% Similarity=0.104 Sum_probs=91.3
Q ss_pred CcchhHHHhhHHHHhhhhc----cCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHH
Q 005769 96 VCLPYLVASANWILGELAS----CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQ 171 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~----~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq 171 (678)
..++.+|.-|.=++-..-. -+|++....+-+.++..|.....++ -.||...+.+|+.++..++. .|+.+|+
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~---~~vr~kl~~~la~i~~~~~p--~Wp~~l~ 125 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGP---KIVLNRLCISLGAYIVHMLG--EWPGAIE 125 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHTTC--C------
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHccc--cccHHHH
Confidence 3566778777666654432 4677777888889999988754333 68999999999999999876 9999999
Q ss_pred HHHhhcCCc------c-chhhHHHHHHHHHHh-hcc-----------ccccccchHHHHHHHHHHHhcCCCCC-CChhHH
Q 005769 172 VIVGRIGYE------D-EENSILFELLSSVVG-AAN-----------ENVADHIPYIVSSLVAAISKHMHPSS-EPWPQV 231 (678)
Q Consensus 172 ~i~~~i~~~------d-~e~~~L~qll~~~vE-~g~-----------E~va~~lp~iV~~~~~~~~k~l~p~~-~~~~Q~ 231 (678)
.++..++.. + +--.....+|+++.| +.. +.+..++|.++.-+..-+.+.-.+.. ..-..+
T Consensus 126 ~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~ 205 (971)
T 2x1g_F 126 EVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSN 205 (971)
T ss_dssp HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhH
Confidence 999988653 1 222367888888885 321 22445678888666555433322100 111256
Q ss_pred HHHHHHHHHHHHHH
Q 005769 232 VERGFAALALMAQS 245 (678)
Q Consensus 232 ve~g~~alaa~~q~ 245 (678)
...++.++.++.++
T Consensus 206 ~~~al~~l~~~~~~ 219 (971)
T 2x1g_F 206 MNRAVKCVGTWIKN 219 (971)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 66677777766663
No 48
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=82.40 E-value=0.75 Score=49.27 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=54.1
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCC-CC--CChhh
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-MP--PEWYP 168 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~-~p--p~~~p 168 (678)
.+.+-+|..|+|++|.++...++.. ...+...+++.|.++ ...||..|+.+|.+|.++.. .+ .....
T Consensus 184 ~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 257 (530)
T 1wa5_B 184 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN------KPSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257 (530)
T ss_dssp HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC------CHHHHHHHHHHHHHHHCCSSSCCCHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC------CHHHHHHHHHHHHHHhCCCCCCCcHHHHHh
Confidence 4577899999999999986543211 112455666666653 37899999999999998762 22 12235
Q ss_pred HHHHHHhhcCCcc
Q 005769 169 LLQVIVGRIGYED 181 (678)
Q Consensus 169 LLq~i~~~i~~~d 181 (678)
+++.++..+...+
T Consensus 258 ~l~~L~~lL~~~d 270 (530)
T 1wa5_B 258 ALPTLAKLIYSMD 270 (530)
T ss_dssp GHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCC
Confidence 5666677776665
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=82.10 E-value=0.33 Score=44.82 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=43.7
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
.+.+.+|..|+|+++.++...++.. .......+++.|.+++ .-||..|+.||+++..++
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------EQILQEALWALSNIASGG 169 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC------HHHHHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC------HHHHHHHHHHHHHHHcCC
Confidence 5678999999999999986433211 1235566777776654 789999999999998753
No 50
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=81.47 E-value=1.2 Score=47.36 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=44.2
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
.+.+-++..|+|++|.++...++.. ...+...+++.|..+. ...||..|+.+|+++...
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL-----KKSIKKEACWTISNITAG 359 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-----CHHHHHHHHHHHHHHHTS
T ss_pred CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHCC
Confidence 5678999999999999987443211 1235677778887662 278999999999999864
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=81.13 E-value=1.2 Score=48.18 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=51.2
Q ss_pred HHHHHHHhhcccCccc--cCcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHH
Q 005769 79 FTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGA 152 (678)
Q Consensus 79 ~~~~l~~~rV~P~~~~--~~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~A 152 (678)
....++...++|.+.. ..+.+.+|..|||+++.++...++.. ...++..++..|...+ ..||..|+.|
T Consensus 308 ~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~------~~v~~~Aa~a 381 (510)
T 3ul1_B 308 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD------FKTQKEAAWA 381 (510)
T ss_dssp HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC------HHHHHHHHHH
T ss_pred HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC------HHHHHHHHHH
Confidence 3344444445543321 35667999999999999986443211 1235566777777665 8899999999
Q ss_pred HHHHHhcC
Q 005769 153 IVGLLEND 160 (678)
Q Consensus 153 i~sLie~~ 160 (678)
|++|...+
T Consensus 382 L~Nl~~~~ 389 (510)
T 3ul1_B 382 ITNYTSGG 389 (510)
T ss_dssp HHHHHHHC
T ss_pred HHHHHccC
Confidence 99998764
No 52
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=80.97 E-value=1.4 Score=47.05 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=57.7
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC--CChhhH
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP--PEWYPL 169 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p--p~~~pL 169 (678)
.+.+.+|..|+|++|.++.-.++.. ...+...+++.|... +...||..|+.+|.+|..+...+ .....+
T Consensus 171 ~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 245 (528)
T 4b8j_A 171 SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-----TKLSMLRNATWTLSNFCRGKPQPSFEQTRPA 245 (528)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-----CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 4678999999999999986433110 011344555555221 14789999999999999886322 123456
Q ss_pred HHHHHhhcCCccchhhHHHHHHHHH
Q 005769 170 LQVIVGRIGYEDEENSILFELLSSV 194 (678)
Q Consensus 170 Lq~i~~~i~~~d~e~~~L~qll~~~ 194 (678)
++.++..+...+. .+....+..+
T Consensus 246 l~~L~~lL~~~~~--~v~~~a~~aL 268 (528)
T 4b8j_A 246 LPALARLIHSNDE--EVLTDACWAL 268 (528)
T ss_dssp HHHHHHHTTCCCH--HHHHHHHHHH
T ss_pred HHHHHHHHCCCCH--HHHHHHHHHH
Confidence 7777777766653 3554444333
No 53
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=80.40 E-value=0.96 Score=39.65 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=38.5
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHH
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG 155 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~s 155 (678)
.+.|.+|..|+|.+|++.. ......+++.|.+++ .-||..|+.||+.
T Consensus 84 d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~------~~vr~~A~~aL~~ 130 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGT------GFARKVAVNYLET 130 (131)
T ss_dssp HCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCC------THHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCC------HHHHHHHHHHHHh
Confidence 5788999999999999862 456777888887766 7899999998864
No 54
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=78.88 E-value=0.49 Score=53.61 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=41.0
Q ss_pred cCcchhHHHhhHHHHhhhhccCCCCc-----cHHHHHHHHH-HHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 95 SVCLPYLVASANWILGELASCLPEDI-----SADVYSSLLK-ALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 95 ~~~sp~LrA~A~Wv~gela~~l~e~~-----~~~~~~sll~-al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
.++.|-.|..|||.++.++. +..+ ..++...++. .|.|++ ..||+.|++||++|-..+
T Consensus 44 ~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~------~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 44 KSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNN------IDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp SSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSC------HHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCC------HHHHHHHHHHHHHHHhhc
Confidence 47788999999999999985 2111 1123334433 355555 899999999999997654
No 55
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=77.85 E-value=6.3 Score=42.56 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=62.3
Q ss_pred HhhHhhHHHHHHhhChHHHHHHHHhhcccCccc---cCcchhHHHhhHHHHhhhhccCCCCccHH----HHHHHHHHHhc
Q 005769 62 LMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV---SVCLPYLVASANWILGELASCLPEDISAD----VYSSLLKALQM 134 (678)
Q Consensus 62 L~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~---~~~sp~LrA~A~Wv~gela~~l~e~~~~~----~~~sll~al~d 134 (678)
+-|...+...|.+.+.+-...++..-|+|.+-- ....|-++..|+|+++.++...++....- +...+++.|..
T Consensus 94 ~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s 173 (529)
T 3tpo_A 94 LQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 173 (529)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 445555555564444334667777777774421 34567899999999999998766443222 33456666655
Q ss_pred ccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 135 LDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 135 p~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
++ .-||-.|+.||+++..++
T Consensus 174 ~~------~~v~e~A~~aL~nLa~~~ 193 (529)
T 3tpo_A 174 PH------AHISEQAVWALGNIAGAG 193 (529)
T ss_dssp SC------HHHHHHHHHHHHHHHTTC
T ss_pred CC------HHHHHHHHHHHHHHhccC
Confidence 55 789999999999998654
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=77.15 E-value=4.5 Score=41.45 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=44.3
Q ss_pred CcchhHHHhhHHHHhhhhccCCCC----ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 96 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~----~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
.+.+-++.+|||+++.++...++. ....+...++..|..++ ..||-.|+.||++++..
T Consensus 178 ~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d------~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 178 QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH------SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC------STHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC------hhHHHHHHHHHHHHHhC
Confidence 457799999999999998764432 12235566677766665 89999999999999987
No 57
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=76.00 E-value=0.98 Score=48.91 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=44.0
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCc----cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~----~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
.+.+.++..|||+++.++...++.. ...++..++..|...+ ..||-.|+.||++|...+
T Consensus 346 ~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~------~~v~~~A~~aL~nl~~~~ 408 (529)
T 3tpo_A 346 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD------FKTQKAAAWAITNYTSGG 408 (529)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC------HHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC------HHHHHHHHHHHHHHHcCC
Confidence 6677999999999999986544211 1234556666676655 889999999999998754
No 58
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=74.25 E-value=2.1 Score=51.23 Aligned_cols=71 Identities=14% Similarity=0.032 Sum_probs=41.6
Q ss_pred HHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCccchhhH
Q 005769 107 WILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSI 186 (678)
Q Consensus 107 Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d~e~~~ 186 (678)
.+++-++++...++....+..+-+.+..++ ..-..|=+|..|+++..+. ..+..-.++| |++
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~----~~W~~~EA~~~a~gaIa~~-~~~~~e~~~l-------------~~v 496 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSE----WSWHNINTLSWAIGSISGT-MSEDTEKRFV-------------VTV 496 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTT----CCHHHHHHHHHHHHHTTTS-SCHHHHHHHH-------------HHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHcC-CCchhHHHHH-------------HHH
Confidence 667777776665554444554444444322 1266778888888888753 2333355677 666
Q ss_pred HHHHHHHHH
Q 005769 187 LFELLSSVV 195 (678)
Q Consensus 187 L~qll~~~v 195 (678)
+..|+.++.
T Consensus 497 i~~Ll~l~~ 505 (1023)
T 4hat_C 497 IKDLLDLCV 505 (1023)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 666665543
No 59
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.81 E-value=65 Score=37.86 Aligned_cols=103 Identities=12% Similarity=0.107 Sum_probs=59.6
Q ss_pred hhHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhc-cCCC----------CccHHHHHHH
Q 005769 60 GVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CLPE----------DISADVYSSL 128 (678)
Q Consensus 60 GaL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~-~l~e----------~~~~~~~~sl 128 (678)
.++-++|..++|++.++ .++.+++. .++..+. .+.|-++.+|||.+..|+. |-.. .-...+++.+
T Consensus 519 ~~~~~lgry~~~~~~~~-~~l~~vl~-~ll~~l~--~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l 594 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKAHW-NFLRTVIL-KLFEFMH--ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDI 594 (1049)
T ss_dssp HHHHHHHHCHHHHHHCH-HHHHHHHH-HHHHHTT--SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhHH-HHHHHHHH-HHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 46778899999999864 46665544 3444333 5678999999999999996 4311 0133444444
Q ss_pred HHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHH
Q 005769 129 LKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQV 172 (678)
Q Consensus 129 l~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~ 172 (678)
...+...+. --+...--||+.++.+...+....++++.
T Consensus 595 ~~~~~~~~~------~~~~~~~eai~~ii~~~~~~~~~~~~~~~ 632 (1049)
T 3m1i_C 595 QKTTADLQP------QQVHTFYKACGIIISEERSVAERNRLLSD 632 (1049)
T ss_dssp HHHHTTSCH------HHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHhCCH------HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444443221 12334445667777655322234444433
No 60
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=68.05 E-value=22 Score=38.21 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=62.0
Q ss_pred hHhhHhhHHHHHHhhChHHHHHHHHhhcccCcc--c-cCcchhHHHhhHHHHhhhhccCCCCccHH----HHHHHHHHHh
Q 005769 61 VLMAYGGLQEFLREQKSEFTANLVRSRVLPLYS--V-SVCLPYLVASANWILGELASCLPEDISAD----VYSSLLKALQ 133 (678)
Q Consensus 61 aL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~--~-~~~sp~LrA~A~Wv~gela~~l~e~~~~~----~~~sll~al~ 133 (678)
-+-|..++.+.|.+.+.+-+..++..-++|.+- + ....|-++..|+|+++.+|...++....- +...+++.|.
T Consensus 74 q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~ 153 (510)
T 3ul1_B 74 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153 (510)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 344555555555443333456677766666432 1 34567899999999999997666543222 3455677776
Q ss_pred cccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 134 MLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 134 dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
.++ .-||-.|+.||+++..++
T Consensus 154 s~~------~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 154 SPH------AHISEQAVWALGNIAGDG 174 (510)
T ss_dssp CSC------HHHHHHHHHHHHHHHTTC
T ss_pred CCC------HHHHHHHHHHHHHHHhCC
Confidence 665 789999999999997654
No 61
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=65.49 E-value=1.3 Score=46.85 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=13.0
Q ss_pred HHHHHHHccccchhhhhhHHHHHHHHHHH
Q 005769 307 LRSIILSVSERNVIEELKLSELLLVWADL 335 (678)
Q Consensus 307 le~il~~~t~~~~~~~~kis~L~~vwa~~ 335 (678)
|+..++.++.+... .-.|..+++++|.+
T Consensus 46 ~e~~l~~L~d~Gfs-~~~i~~il~~~P~i 73 (335)
T 4fp9_B 46 LERVMSSLLDMGFS-NAHINELLSVRRGA 73 (335)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHCCCC-HHHHHHHHHhCccc
Confidence 44444444444444 33455555555443
No 62
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=64.00 E-value=1.5 Score=47.91 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=11.7
Q ss_pred hccccchhhhHhhh-hcc
Q 005769 344 ETEDLSVFDCIKEI-VNL 360 (678)
Q Consensus 344 e~ed~~~fD~i~e~-V~l 360 (678)
...|+.++.|+.+| |-.
T Consensus 204 ~e~De~iLk~L~DI~Ve~ 221 (417)
T 2ayu_A 204 TDRDAEVLEYLQDIGLEY 221 (417)
T ss_dssp CHHHHTGGGGEEEEECCB
T ss_pred hhhhHHHHhhccceEEEE
Confidence 45567788888888 544
No 63
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=62.63 E-value=1.7 Score=47.39 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=6.4
Q ss_pred chhhHHHHHH
Q 005769 485 GFALWGSALA 494 (678)
Q Consensus 485 ~F~~W~saLa 494 (678)
.|=.||+-..
T Consensus 311 SFFnfFspp~ 320 (417)
T 2ayu_A 311 SFFNFFDPPK 320 (417)
T ss_dssp CGGGGGSCSC
T ss_pred CceeecCCCC
Confidence 5667886543
No 64
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=60.92 E-value=36 Score=40.88 Aligned_cols=84 Identities=15% Similarity=0.064 Sum_probs=61.9
Q ss_pred hhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHh--cCCCC
Q 005769 86 SRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE--NDYMP 163 (678)
Q Consensus 86 ~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie--~~~~p 163 (678)
.+++-.+. ....|++|..|+|.+|.+..=.| ..++...|-+.+.|++ -=||-.|+.||+-..- |+-..
T Consensus 614 ~rlv~~L~-~~~d~~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d------~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 614 PRIVQLLS-KSHNAHVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPV------DFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp HHHTTTGG-GCSCHHHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHSTTCCTTTC
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCC------HHHHHHHHHHHHHHhcCCccccc
Confidence 34555444 56679999999999998764444 5778887777777777 7799999999987764 33345
Q ss_pred CChhhHHHHHHhhcCC
Q 005769 164 PEWYPLLQVIVGRIGY 179 (678)
Q Consensus 164 p~~~pLLq~i~~~i~~ 179 (678)
|.+..+++.+.+-+.+
T Consensus 684 ~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 684 PQVADINKNFLSVITN 699 (963)
T ss_dssp TTHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhc
Confidence 7788888777776654
No 65
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=59.84 E-value=30 Score=38.47 Aligned_cols=71 Identities=14% Similarity=-0.011 Sum_probs=52.7
Q ss_pred hcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCCh
Q 005769 87 RVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW 166 (678)
Q Consensus 87 rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~ 166 (678)
.|++... .+-+++|.+|-.+++.+++ +.|...+...++..+.+.+ .-+|..++.||+.+-... +++.
T Consensus 354 ~i~~~l~--d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d------~e~r~~~v~~I~~la~k~--~~~~ 420 (618)
T 1w63_A 354 TIVDCLK--DLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCE------PEFKADCASGIFLAAEKY--APSK 420 (618)
T ss_dssp HHHHGGG--SSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHSS--CCCH
T ss_pred HHHHHcc--CCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHh--CccH
Confidence 4455444 4557999999999988876 4567778888888888755 779999999999997742 4555
Q ss_pred hhHH
Q 005769 167 YPLL 170 (678)
Q Consensus 167 ~pLL 170 (678)
...+
T Consensus 421 ~~~v 424 (618)
T 1w63_A 421 RWHI 424 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 66
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=53.24 E-value=3.5e+02 Score=32.11 Aligned_cols=246 Identities=9% Similarity=0.007 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhcccCCCCCcCcchhhhhHHHHH---HHhcCCCCCChhhHHHHHHh--hcCCcc-chhhHHHHHHHHHHh
Q 005769 123 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG---LLENDYMPPEWYPLLQVIVG--RIGYED-EENSILFELLSSVVG 196 (678)
Q Consensus 123 ~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~s---Lie~~~~pp~~~pLLq~i~~--~i~~~d-~e~~~L~qll~~~vE 196 (678)
.++ .++..|...........-||..+.-.|+. .+.. .|.-+.|+|+.+++ ++.... .=.+.---+|..+++
T Consensus 490 ~l~-~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~--~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 490 VLS-QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY--ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HHH-HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT--CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 344 55555544322212235588777766654 3432 35678899999999 776544 112234567777777
Q ss_pred hccccccccchHHHHHHHHHHHhcCCCCCCCh-----hHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhHHH
Q 005769 197 AANENVADHIPYIVSSLVAAISKHMHPSSEPW-----PQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIA 271 (678)
Q Consensus 197 ~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~-----~Q~ve~g~~alaa~~q~~~~~~~de~~d~~~~~~~a~G~~~~~ 271 (678)
.-..++..+++.|+.+++.-+ .-.++|. ||..- +|-..+ ..--.++-+.
T Consensus 567 ~~~~~L~~~~~~il~~l~~lL----~~~~~~~~~~~~~~~~~-----------------~~~~~~-----~~~~~ql~L~ 620 (980)
T 3ibv_A 567 SIKKQVVNYTESSLAMLGDLL----NISVSPVTDMDAPVPTL-----------------NSSIRN-----SDFNSQLYLF 620 (980)
T ss_dssp HTTTTCSSSHHHHHHHTTGGG----CCCCCCCCC--CSSCCH-----------------HHHHHT-----TTHHHHHHHH
T ss_pred HhhHHhhhHHHHHHHHHHHhh----cCcCCCCCcccccccch-----------------hhhccc-----CCchHHHHHH
Confidence 766666666666666663332 3111100 00000 000000 0112355567
Q ss_pred HHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhhhccccchh
Q 005769 272 KAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVF 351 (678)
Q Consensus 272 ~a~stlLq~aw~~P~~~~E~~~~P~~~~~~D~s~lle~il~~~t~~~~~~~~kis~L~~vwa~~ia~w~~Wee~ed~~~f 351 (678)
.|+++|+..... | .++-..+++.++ .++..-|...+..+.. +. +. ..
T Consensus 621 eaig~li~~~~~-----------~----~e~~~~~l~~ll--------------~pl~~~l~~~l~~~~~--~~-~~-~~ 667 (980)
T 3ibv_A 621 ETVGVLISSGNL-----------T----PEEQALYCDSLI--------------NALIGKANAALSSDLS--AL-EN-II 667 (980)
T ss_dssp HHHHHHHHHSCC-----------C----HHHHHHHHHHHH--------------HHHHHHHHHHHTTSCC-----CH-HH
T ss_pred HHHHHHHhCCCC-----------C----HHHHHHHHHHHH--------------HHHHHHHHHHHhhccc--Cc-cH-HH
Confidence 899999887543 1 123344454444 2344444444443321 10 11 11
Q ss_pred hhHhhh-hcccc-cccccceeeccCCCCCCCCCCchhHHhhHHHHHHHHHhcCccc---hhhhhhhHHHHhhCCCCCccc
Q 005769 352 DCIKEI-VNLHS-KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSA---TWRACSCVHTLLHVPKYSFET 426 (678)
Q Consensus 352 D~i~e~-V~l~~-s~g~~~F~~~~~~~~~~~p~~~~s~ie~l~~fvs~ai~~~p~a---~~rACkl~h~lL~~~~~s~~~ 426 (678)
.+..+ ..+.. ..|..++- ..+.|--.++..++..+..++..++.. +-|+|++.|-++.+..
T Consensus 668 -~i~~~i~al~~lakgf~~~~--------~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg----- 733 (980)
T 3ibv_A 668 -SVYCSLMAIGNFAKGFPARG--------SEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVG----- 733 (980)
T ss_dssp -HHHHHHHHHHHHHHTSCSCC---------CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTH-----
T ss_pred -HHHHHHHHHHHHhccCCccc--------CCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-----
Confidence 22222 22222 33443331 111122345556666666667766554 7889999999999887
Q ss_pred chhhhhhHHHHHHHHHhhh
Q 005769 427 EGVKQSLTISFSCAAFSRF 445 (678)
Q Consensus 427 eg~~d~~i~~f~~aA~~rl 445 (678)
..+..+++++++...+.+
T Consensus 734 -~~~~p~lp~~i~~ll~~~ 751 (980)
T 3ibv_A 734 -PDMLPKVPQLISILLNSI 751 (980)
T ss_dssp -HHHTTTHHHHHHHHHHHC
T ss_pred -HhHHHHHHHHHHHHHhcC
Confidence 678888888888777544
No 67
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=52.89 E-value=41 Score=35.63 Aligned_cols=118 Identities=10% Similarity=0.028 Sum_probs=76.8
Q ss_pred cCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHH
Q 005769 95 SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 174 (678)
Q Consensus 95 ~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~ 174 (678)
..+.||+|+.|-=.+|. +..+++...+...+-++|.|.+ .-||-.|+.+...|+... |.-...++..+-
T Consensus 114 ~~~N~~iR~lALRtL~~---I~~~~m~~~l~~~lk~~L~d~~------pyVRk~A~l~~~kL~~~~--pe~v~~~~~~l~ 182 (355)
T 3tjz_B 114 TGKEDSYRGPAVRALCQ---ITDSTMLQAIERYMKQAIVDKV------PSVSSSALVSSLHLLKCS--FDVVKRWVNEAQ 182 (355)
T ss_dssp HSSCHHHHHHHHHHHHH---HCCTTTHHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHTTTC--HHHHHTTHHHHH
T ss_pred CCCcHhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhccC--HHHHHHHHHHHH
Confidence 36778999999766654 5677889999999999999999 889999999998887654 322333444444
Q ss_pred hhcCCccchhhHHHHHHHHHHhhccccccccchHHHHHHHHHHHhcCCCCCCChhHHH
Q 005769 175 GRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVV 232 (678)
Q Consensus 175 ~~i~~~d~e~~~L~qll~~~vE~g~E~va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~v 232 (678)
..+.+. .|.....-+..+.|....+ ...+..+|..| .+. +-..||.|+.
T Consensus 183 ~ll~d~--n~~V~~~Al~lL~ei~~~d-~~a~~kLv~~l----~~~--~l~~~~~q~~ 231 (355)
T 3tjz_B 183 EAASSD--NIMVQYHALGLLYHVRKND-RLAVSKMISKF----TRH--GLKSPFAYCM 231 (355)
T ss_dssp HHTTCS--SHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH----HSS--CCSCHHHHHH
T ss_pred HHhcCC--CccHHHHHHHHHHHHHhhc-hHHHHHHHHHH----hcC--CCcChHHHHH
Confidence 444433 3667777777777764322 11334444343 332 2225776653
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=52.71 E-value=25 Score=42.32 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCcc--chhhHHHHHHHHHHhhcccc
Q 005769 124 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED--EENSILFELLSSVVGAANEN 201 (678)
Q Consensus 124 ~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d--~e~~~L~qll~~~vE~g~E~ 201 (678)
++-.++-.+.+.-+|. .-+||-.|..|+.+++.+- -|.....+|-+++..+.... -.----..++..+++..++-
T Consensus 92 ~~~~~~~~~~~~~~dk--~~~v~~aa~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 92 YIVQLVPAICTNAGNK--DKEIQSVASETLISIVNAV-NPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp HHHTTHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHS-CGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred chHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 3333444444444444 2689999999999999764 34455677777777774442 33334588899999998999
Q ss_pred ccccchHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 005769 202 VADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 248 (678)
Q Consensus 202 va~~lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~~~~ 248 (678)
++..+|.||-.+.+.| . ++=+.|=..+.+++-++..+..+
T Consensus 169 ~~~~~~~~~p~~~~~~----~---d~k~~v~~~~~~~~~~~~~~~~n 208 (986)
T 2iw3_A 169 VALRMPELIPVLSETM----W---DTKKEVKAAATAAMTKATETVDN 208 (986)
T ss_dssp HHHHHHHHHHHHHHHT----T---CSSHHHHHHHHHHHHHHGGGCCC
T ss_pred HHHhccchhcchHhhc----c---cCcHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999995555 7 88888888888887777555443
No 69
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=50.56 E-value=3.3 Score=43.75 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=6.1
Q ss_pred chhhHHHHHHHHHHHh
Q 005769 535 LLQDCYASLMEAAVQL 550 (678)
Q Consensus 535 ~l~~c~~slle~~~~l 550 (678)
++.++..+.++-.-.|
T Consensus 255 F~~~vA~~s~eey~~F 270 (335)
T 4fp9_B 255 FLARTACTSVEEFQVF 270 (335)
T ss_dssp HHHHTSCCCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHH
Confidence 3333333334444444
No 70
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=49.01 E-value=8.3 Score=43.25 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=46.2
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCcc-HHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPEDIS-ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~-~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
.++||+|-+|+-.+..+....|+... ...+..+.+.|.|++ .-|+..|..+|..+.+++
T Consensus 159 d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d------~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 159 DTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQH------LGVVTAATSLITTLAQKN 218 (621)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSC------HHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCC------ccHHHHHHHHHHHHHHhC
Confidence 68999999999999999985554322 156777777777766 789999999999988765
No 71
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=48.05 E-value=72 Score=37.03 Aligned_cols=75 Identities=19% Similarity=0.345 Sum_probs=56.1
Q ss_pred cCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCccch-hhHHHHHHHH
Q 005769 115 CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSS 193 (678)
Q Consensus 115 ~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d~e-~~~L~qll~~ 193 (678)
-++++....+=+.++.+|..+. -.||..++-+|+.+...++ |..|+.||+.++..++..+.. -.-.+..|..
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~------~~ir~~l~~~ia~ia~~d~-p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~ 149 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLP------NNLQVQIGEAISSIADSDF-PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHS 149 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHS-TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHhhC-ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3566666677788999998865 7899999999999999987 479999999999999776521 1112444555
Q ss_pred HHh
Q 005769 194 VVG 196 (678)
Q Consensus 194 ~vE 196 (678)
+.+
T Consensus 150 i~~ 152 (960)
T 1wa5_C 150 IFK 152 (960)
T ss_dssp HHG
T ss_pred HHH
Confidence 555
No 72
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=45.42 E-value=23 Score=36.90 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=45.0
Q ss_pred CcchhHHHhhHHHHhhhhccC-CCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 96 VCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l-~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
.+.+.++.+|+|+++.++... .......+...+++.|.+++ ..||..|+.+|++|-.+
T Consensus 238 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 238 DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD------INVVTCAAGILSNLTCN 296 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC------HHHHHHHHHHHHHHhcC
Confidence 457889999999999999733 33345677788888776544 78999999999999664
No 73
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=41.51 E-value=6.5 Score=40.24 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=12.5
Q ss_pred hccccchhhhHhhh-hcc
Q 005769 344 ETEDLSVFDCIKEI-VNL 360 (678)
Q Consensus 344 e~ed~~~fD~i~e~-V~l 360 (678)
...|+.++.|+.+| |-.
T Consensus 73 ~e~De~iL~~L~dI~v~~ 90 (264)
T 2zd7_A 73 RASDFKYIDTIDKIKVEW 90 (264)
T ss_dssp CGGGHHHHTTEEEEEEEE
T ss_pred CHhhHHHHHhcCceEEEE
Confidence 45677788888888 654
No 74
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=37.04 E-value=21 Score=37.94 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHhhhhhhc
Q 005769 538 DCYASLMEAAVQLKEVQED 556 (678)
Q Consensus 538 ~c~~slle~~~~lke~~ee 556 (678)
.....+-+.+-.+||..++
T Consensus 179 ~~~~lvkDaleEl~E~~e~ 197 (360)
T 3ay5_A 179 KNVDFVKDAHEEMEQAVEE 197 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344444555567777654
No 75
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=34.60 E-value=40 Score=38.64 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=45.4
Q ss_pred CcchhHHHhhHHHHhhhhcc-CCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 96 VCLPYLVASANWILGELASC-LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~-l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
...+-++.+|+|+++.++.. .+......+...+++.|..++ .-||..|+.||++|..+
T Consensus 371 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d------~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 371 DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD------INVVTCAAGILSNLTCN 429 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCC------HHHHHHHHHHHHHHHhC
Confidence 45678999999999999973 333456778888888877654 77999999999999664
No 76
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=32.77 E-value=42 Score=36.92 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=58.3
Q ss_pred CcchhHHHhhHHHHhhhhccCCCC----ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCCh--hhH
Q 005769 96 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW--YPL 169 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~----~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~--~pL 169 (678)
...+.+|.+|+.+++.++...... ....+...+++.|.... +.-||..|+.+|++|-.+......+ ...
T Consensus 25 ~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~-----~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~ 99 (644)
T 2z6h_A 25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-----DVETARCTAGTLHNLSHHREGLLAIFKSGG 99 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCC-----CHHHHHHHHHHHHHHTTSHHHHHHHHTTTH
T ss_pred CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCC-----CHHHHHHHHHHHHHHhcChhhHHHHHHcCC
Confidence 356799999999999999744311 12356788888887542 4779999999999887653211000 024
Q ss_pred HHHHHhhcCCccchhhHHHHHHHHH
Q 005769 170 LQVIVGRIGYEDEENSILFELLSSV 194 (678)
Q Consensus 170 Lq~i~~~i~~~d~e~~~L~qll~~~ 194 (678)
+..+++.++..+ +.+..+.+..+
T Consensus 100 i~~Lv~lL~~~~--~~v~~~A~~aL 122 (644)
T 2z6h_A 100 IPALVKMLGSPV--DSVLFYAITTL 122 (644)
T ss_dssp HHHHHHHTTCSS--HHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHH
Confidence 555666676655 33544444333
No 77
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=32.27 E-value=53 Score=36.13 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=48.6
Q ss_pred hcccCccccCcchhHHHhhHHHHhhhhccC-CCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 87 RVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 87 rV~P~~~~~~~sp~LrA~A~Wv~gela~~l-~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
.++.... .+++.++.+|+|+++.++... .......+...+++.|...+ .-||..|+.+|++|-.+
T Consensus 228 ~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d------~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 228 ALGLHLT--DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD------INVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHTTTT--CSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC------HHHHHHHHHHHHHHHcC
Confidence 3444444 456789999999999999733 23445677888888887554 67999999999999765
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=31.24 E-value=76 Score=38.21 Aligned_cols=142 Identities=11% Similarity=0.103 Sum_probs=90.1
Q ss_pred hhhHhhHhhHHHHHHhhChHHHHHHHH---hhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcc
Q 005769 59 FGVLMAYGGLQEFLREQKSEFTANLVR---SRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQML 135 (678)
Q Consensus 59 ~GaL~a~G~L~~~Lk~~~k~~~~~l~~---~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp 135 (678)
-||+++|++|+......++ ++..+. .-||=.|. ..-.-+|..|--.+--+..+.++.--..++-.++..|...
T Consensus 70 ~~a~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 145 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPS--VEPYIVQLVPAICTNAG--NKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVET 145 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTT--THHHHHTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCC--cccchHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc
Confidence 6888888888866554332 133333 22333333 3445788888888888887555544477888888888543
Q ss_pred cCCCCCcCcchhhhhHHHHHHHhcCC-----CCCChhhHHHHHHhhcCCccchhhHHHHHHHHHH---h-hccccccccc
Q 005769 136 DKGDTSCYPVRASAAGAIVGLLENDY-----MPPEWYPLLQVIVGRIGYEDEENSILFELLSSVV---G-AANENVADHI 206 (678)
Q Consensus 136 ~~~~~s~lPVRvsAa~Ai~sLie~~~-----~pp~~~pLLq~i~~~i~~~d~e~~~L~qll~~~v---E-~g~E~va~~l 206 (678)
. ..+.++-|-..|..|++... ..|++-|.+ ...+-+...| +-.+-.++|. . ++|.|+...|
T Consensus 146 ~-----kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~d~k~~--v~~~~~~~~~~~~~~~~n~d~~~~~ 215 (986)
T 2iw3_A 146 N-----KWQEKIAILAAFSAMVDAAKDQVALRMPELIPVL---SETMWDTKKE--VKAAATAAMTKATETVDNKDIERFI 215 (986)
T ss_dssp C-----CHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH---HHHTTCSSHH--HHHHHHHHHHHHGGGCCCTTTGGGH
T ss_pred c-----chHHHHHHHHHHHHHHHHhHHHHHHhccchhcch---HhhcccCcHH--HHHHHHHHHHHHHhcCCCcchhhhH
Confidence 3 38899999999999998651 115555555 3333344433 4433333333 2 7889999999
Q ss_pred hHHHHHHH
Q 005769 207 PYIVSSLV 214 (678)
Q Consensus 207 p~iV~~~~ 214 (678)
|.+|..++
T Consensus 216 ~~~~~~~~ 223 (986)
T 2iw3_A 216 PSLIQCIA 223 (986)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988774
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=28.56 E-value=96 Score=32.85 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=56.8
Q ss_pred hHhhHhhHHHHHHhhChHHHHHHHH-----------hhcccCcc--ccCcchhHHHhhHHHHhhhhccCCCCccHHHHHH
Q 005769 61 VLMAYGGLQEFLREQKSEFTANLVR-----------SRVLPLYS--VSVCLPYLVASANWILGELASCLPEDISADVYSS 127 (678)
Q Consensus 61 aL~a~G~L~~~Lk~~~k~~~~~l~~-----------~rV~P~~~--~~~~sp~LrA~A~Wv~gela~~l~e~~~~~~~~s 127 (678)
|+|++-+|+.-|....+-+...-+| +.+.|.+. +...+||+|.+|+.....+....|+-. ....+.
T Consensus 102 ~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-~~~~~~ 180 (355)
T 3tjz_B 102 VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-KRWVNE 180 (355)
T ss_dssp GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-HTTHHH
T ss_pred HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-HHHHHH
Confidence 5677888887776654434444344 12222111 146789999999999988877666532 334445
Q ss_pred HHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 128 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 128 ll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
+-.++.|.+ .-|...|.++|..+-+++
T Consensus 181 l~~ll~d~n------~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 181 AQEAASSDN------IMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHHHTTCSS------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCC------ccHHHHHHHHHHHHHhhc
Confidence 555555544 566666777777766654
No 80
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=28.37 E-value=22 Score=36.29 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=7.3
Q ss_pred HHHHHccccchh
Q 005769 309 SIILSVSERNVI 320 (678)
Q Consensus 309 ~il~~~t~~~~~ 320 (678)
.||+|++.....
T Consensus 78 ~iL~~L~dI~v~ 89 (264)
T 2zd7_A 78 KYIDTIDKIKVE 89 (264)
T ss_dssp HHHTTEEEEEEE
T ss_pred HHHHhcCceEEE
Confidence 466777665544
No 81
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=26.26 E-value=26 Score=36.58 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=51.5
Q ss_pred CcchhHHHhhHHHHhhhhccCCCC----ccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCChh--hH
Q 005769 96 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWY--PL 169 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~----~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~~--pL 169 (678)
...+.+|.+|.++++.++...+.. ....++..+++.|.... +..||..|+.+|++|-.+......+. ..
T Consensus 28 ~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~-----~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~ 102 (529)
T 1jdh_A 28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-----DVETARCTAGTLHNLSHHREGLLAIFKSGG 102 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHcCchhHHHHHHcCC
Confidence 456789999999999998632210 12357778888887542 37799999999999865422110000 13
Q ss_pred HHHHHhhcCCcc
Q 005769 170 LQVIVGRIGYED 181 (678)
Q Consensus 170 Lq~i~~~i~~~d 181 (678)
+..+++.++..+
T Consensus 103 i~~L~~lL~~~~ 114 (529)
T 1jdh_A 103 IPALVKMLGSPV 114 (529)
T ss_dssp HHHHHHHTTCSC
T ss_pred HHHHHHHHcCCC
Confidence 445566666655
No 82
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=25.30 E-value=29 Score=36.93 Aligned_cols=58 Identities=12% Similarity=0.014 Sum_probs=42.8
Q ss_pred CcchhHHHhhHHHHhhhhccCCCC---c------cHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhc
Q 005769 96 VCLPYLVASANWILGELASCLPED---I------SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 159 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~---~------~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~ 159 (678)
+..|.++..|+|.++.++....+. + ....+..+++.|..++ ..||..|+.||++|-.+
T Consensus 295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~------~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN------SDVVRSGASLLSNMSRH 361 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC------HHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC------HhHHHHHHHHHHHHhcC
Confidence 345789999999999988655431 1 1234566777777665 78999999999999764
No 83
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=23.19 E-value=48 Score=38.99 Aligned_cols=172 Identities=15% Similarity=0.059 Sum_probs=0.0
Q ss_pred hHhhHhhHHHHHHhhChHHHHHHHHhhcccCccccCcchhHHHhhHHHHhhhhccCCCCccHH----HHHHHHHHHhccc
Q 005769 61 VLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISAD----VYSSLLKALQMLD 136 (678)
Q Consensus 61 aL~a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp~LrA~A~Wv~gela~~l~e~~~~~----~~~sll~al~dp~ 136 (678)
|+.|++-|...=.+.....++.-...++..+.. ..++.++..|+|+++.++........-. ....+++.|..++
T Consensus 601 Al~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~--s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d 678 (810)
T 3now_A 601 SLMALTNLASMNESVRQRIIKEQGVSKIEYYLM--EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED 678 (810)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--SCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSS
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCC
Q ss_pred CCCCCcCcchhhhhHHHHHHHh-cCCCCCChhh---HHHHHHhhcCCccchhhHH-HHHHHHHHhhccccccccc--hHH
Q 005769 137 KGDTSCYPVRASAAGAIVGLLE-NDYMPPEWYP---LLQVIVGRIGYEDEENSIL-FELLSSVVGAANENVADHI--PYI 209 (678)
Q Consensus 137 ~~~~s~lPVRvsAa~Ai~sLie-~~~~pp~~~p---LLq~i~~~i~~~d~e~~~L-~qll~~~vE~g~E~va~~l--p~i 209 (678)
..||..|++||+++-. +......+.. .+..++..+...+.+-+.- .-.+.-+.. ++.+.+..| -.+
T Consensus 679 ------~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~-~s~e~~~~l~e~G~ 751 (810)
T 3now_A 679 ------EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN-AGEEIAKKLFETDI 751 (810)
T ss_dssp ------HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHTSTH
T ss_pred ------HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCC
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHH
Q 005769 210 VSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 245 (678)
Q Consensus 210 V~~~~~~~~k~l~p~~~~~~Q~ve~g~~alaa~~q~ 245 (678)
+..| ++.+.-.-..=.++++-++++|..+-+.
T Consensus 752 i~~L----~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 752 MELL----SGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHH----TTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHhCcccCcHHHHHHHHHHHHHHHhC
No 84
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=22.42 E-value=18 Score=33.82 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=4.6
Q ss_pred HHHHHHHHHhhh
Q 005769 434 TISFSCAAFSRF 445 (678)
Q Consensus 434 i~~f~~aA~~rl 445 (678)
++.++..|+.-|
T Consensus 42 A~vliakA~ElF 53 (140)
T 2byk_A 42 VLFLMTKCTELF 53 (140)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333343333
No 85
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=22.26 E-value=2.4e+02 Score=34.08 Aligned_cols=101 Identities=12% Similarity=0.097 Sum_probs=66.8
Q ss_pred CcchhHHHhhHHHHhhhhc----cCCCCccHHHHHHHHHHHhcccCCC---CCcCcchhhhhHHHHHHHhcCCCCCChhh
Q 005769 96 VCLPYLVASANWILGELAS----CLPEDISADVYSSLLKALQMLDKGD---TSCYPVRASAAGAIVGLLENDYMPPEWYP 168 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~----~l~e~~~~~~~~sll~al~dp~~~~---~s~lPVRvsAa~Ai~sLie~~~~pp~~~p 168 (678)
+.++++|--|.=++-..-. -+|++....+-+.++..+..-..++ -...++|-.-+-+|+.++..++ |..|+.
T Consensus 72 s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~-P~~Wp~ 150 (1073)
T 3gjx_A 72 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEW-PKHWPT 150 (1073)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHT-TTTCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhC-hhhccH
Confidence 4577888766655554443 4677777777888888876532111 0136788899999999998864 678999
Q ss_pred HHHHHHhhcCCccchhhHHHHHHHHHHhh
Q 005769 169 LLQVIVGRIGYEDEENSILFELLSSVVGA 197 (678)
Q Consensus 169 LLq~i~~~i~~~d~e~~~L~qll~~~vE~ 197 (678)
+++.++...+..+.--.....+|+.+.|-
T Consensus 151 fi~dLv~~~~~~~~~~~~~L~IL~~L~EE 179 (1073)
T 3gjx_A 151 FISDIVGASRTSESLCQNNMVILKLLSEE 179 (1073)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999988854332112356666666654
No 86
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=21.72 E-value=3.4e+02 Score=30.14 Aligned_cols=117 Identities=15% Similarity=0.273 Sum_probs=59.5
Q ss_pred HHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCC-CChhhHHHHHHhh----
Q 005769 102 VASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP-PEWYPLLQVIVGR---- 176 (678)
Q Consensus 102 rA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~p-p~~~pLLq~i~~~---- 176 (678)
+..|||++|++...+.... -+++..||....-+.|-.||+.+..- ...+.+|..++..
T Consensus 338 k~~anw~~~el~~~ln~~~-----------------~~i~~~~i~p~~la~li~li~~g~Is~~~ak~vl~~~~~~~~~p 400 (483)
T 3ip4_B 338 KLTSNWLMGGVNEYLNKNQ-----------------VELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNA 400 (483)
T ss_dssp HHHHHHHHTHHHHHHHHTT-----------------CCGGGSSCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHhhCC-----------------CCHHhcCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCH
Confidence 5678999998876433211 12234555555555566666665544 2233444444432
Q ss_pred ------cCCcc-chhhHHHHHHHHHHhhcccccccc---chHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005769 177 ------IGYED-EENSILFELLSSVVGAANENVADH---IPYIVSSLVAAISKHMHPSSEPWPQVVERGFA 237 (678)
Q Consensus 177 ------i~~~d-~e~~~L~qll~~~vE~g~E~va~~---lp~iV~~~~~~~~k~l~p~~~~~~Q~ve~g~~ 237 (678)
-|-.- +|...|.++...+++.-++.|... =+-.+..|+++++|.+-=-++ |++|.+-|.
T Consensus 401 ~~iVee~GL~qisD~~eLe~iV~eVIa~np~~v~~~k~GK~ka~gfLVGQVMK~tkGKAd--P~~VnelL~ 469 (483)
T 3ip4_B 401 KQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQAN--PQLVNQLLK 469 (483)
T ss_dssp HHHHHTTTCCCBCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHHHHHHHTTSCBC--HHHHHHHHH
T ss_pred HHHHHhcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHccCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHH
Confidence 22222 333345555555555433333211 134455666777777765556 666664443
No 87
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=20.94 E-value=1.4e+02 Score=34.09 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=58.3
Q ss_pred CcchhHHHhhHHHHhhhhccCCC----CccHHHHHHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcCCCCCCh--hhH
Q 005769 96 VCLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW--YPL 169 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e----~~~~~~~~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~~~pp~~--~pL 169 (678)
...+.+|.+|..+++.++..... .....+...+++.|.... ..-||..|+.+|++|..+......+ .-.
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~-----d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~ 235 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-----DVETARCTSGTLHNLSHHREGLLAIFKSGG 235 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCC-----CHHHHHHHHHHHHHHhCCchhHHHHHHcCC
Confidence 45789999999999999862210 013467888888887552 3779999999999976542110000 124
Q ss_pred HHHHHhhcCCccchhhHHHHHHHHHH
Q 005769 170 LQVIVGRIGYEDEENSILFELLSSVV 195 (678)
Q Consensus 170 Lq~i~~~i~~~d~e~~~L~qll~~~v 195 (678)
++.++..+...+ +.+....+..+.
T Consensus 236 I~~Lv~lL~~~~--~~v~~~A~~aL~ 259 (780)
T 2z6g_A 236 IPALVNMLGSPV--DSVLFHAITTLH 259 (780)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHH
Confidence 556677776665 335444444333
No 88
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=20.90 E-value=81 Score=34.28 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=40.8
Q ss_pred CcchhHHHhhHHHHhhhhccCCCCccHHHH-HHHHHHHhcccCCCCCcCcchhhhhHHHHHHHhcC
Q 005769 96 VCLPYLVASANWILGELASCLPEDISADVY-SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 160 (678)
Q Consensus 96 ~~sp~LrA~A~Wv~gela~~l~e~~~~~~~-~sll~al~dp~~~~~s~lPVRvsAa~Ai~sLie~~ 160 (678)
..+.-++-.|+|+++.++...+++. ..+. .-.+..|.+.-..+ .--||-.|+.||.+|..+.
T Consensus 390 ~~~~~v~~~A~~aL~nLa~~~~~~~-~~i~~~G~I~~Lv~LL~s~--~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 390 SHSLTIVSNACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLIHSK--HKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHSSCHHHH-HHHHHHTHHHHHHTTTTCS--SHHHHHHHHHHHHHHHTCC
T ss_pred CCChHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCC
Confidence 4556799999999999986444322 2222 22344444443222 3668999999999999875
No 89
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A
Probab=20.58 E-value=73 Score=34.16 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=42.1
Q ss_pred HHhhhhccChHHHHHHHhhcC--------CCchhhHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHH-HHhccCCC-
Q 005769 462 AISSCYLCYPAVVEGILKKDE--------DGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVE-RLLGLGNP- 531 (678)
Q Consensus 462 vIssc~~ynP~lv~qiLek~~--------~~~F~~W~saLa~~~~s~~~~~l~~ese~Kl~vl~L~~vie-~Llsl~~~- 531 (678)
+|..+++.++..+++-||-.= -..|..|-..+..++++.--. |.-.+.+.+++. ||-.+|.+
T Consensus 208 li~~~~~~~~~~lLGELQfaFv~~~llgn~~s~eQWk~Ll~Llc~s~~~~--------~~l~~~~l~~L~~QL~~~P~df 279 (363)
T 3sbt_B 208 VMLQGIFKNSSNYFGELQFAFLNAMFFGNYGSSLQWHAMIELICSSATVP--------KHMLDKLDEILYYQIKTLPEQY 279 (363)
T ss_dssp CCCCCCCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTCSCCC--------HHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcchhhh--------HHHHHHHHHHHHHHHHhCCHHH
Confidence 444555667777777665222 237999999999998776521 233455555543 33334433
Q ss_pred -----CCcchhhHHHH
Q 005769 532 -----GSSLLQDCYAS 542 (678)
Q Consensus 532 -----~~~~l~~c~~s 542 (678)
..++|..|+.+
T Consensus 280 ~D~~~~~~~l~~~L~~ 295 (363)
T 3sbt_B 280 SDILLNERVWNICLYS 295 (363)
T ss_dssp HHHHCCHHHHHHHHHT
T ss_pred hhhhcchhHHHHHHHH
Confidence 22355666655
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=20.43 E-value=7.2e+02 Score=25.63 Aligned_cols=125 Identities=17% Similarity=0.098 Sum_probs=83.8
Q ss_pred hHhhHHHHHHhhChHHHHHHHHhhcccCccccCcch--hHHHhhHHHHhhhhccCCCCccHHHHHHHHHHHhcccCCCCC
Q 005769 64 AYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLP--YLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTS 141 (678)
Q Consensus 64 a~G~L~~~Lk~~~k~~~~~l~~~rV~P~~~~~~~sp--~LrA~A~Wv~gela~~l~e~~~~~~~~sll~al~dp~~~~~s 141 (678)
+.-+|-.-||..++ .+.+.+..++||.+=--..+. -+-=+|-=+++-+ .....+..+.|.-+..+|.+-...+
T Consensus 53 aL~~LeellK~~~~-~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~L--Le~vpL~~~~y~Kl~~aL~dlik~~-- 127 (265)
T 3b2a_A 53 AFVALGEILKRADS-DLRMMVLERHLDVFINALSQENEKVTIKALRALGYL--VKDVPMGSKTFLKAAKTLVSLLESP-- 127 (265)
T ss_dssp HHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHH--HTTCCBCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHHHhcCC--
Confidence 44445566777554 677888888888554223333 3333444445544 3444488889999999999888766
Q ss_pred cCcchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcCCcc-chhhHHHHHHHHHHhh
Q 005769 142 CYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGA 197 (678)
Q Consensus 142 ~lPVRvsAa~Ai~sLie~~~~pp~~~pLLq~i~~~i~~~d-~e~~~L~qll~~~vE~ 197 (678)
.-++|-.||-.+..+ ......+-+...+++++..-+ .--+.=+.+|+-|.-.
T Consensus 128 ~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 128 DDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp CHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred CchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 578889999999998 444568888899999996666 3333336666666543
Done!